BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3751
(967 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/425 (46%), Positives = 273/425 (64%), Gaps = 13/425 (3%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
++ LRF+T G+VDDGKSTLIGRLL DSK I+ D L+A++R K +G ++DL+LL
Sbjct: 20 ERKEXLRFLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLV 79
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
DGL++EREQGITIDVAYRYF+T KRKFIIADTPGHEQYTRN TGAST D IIL+DA
Sbjct: 80 DGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDA-- 137
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ TQT+RHS IA LL IKHI++A+NK DL +++ ++ I Y KFAE I
Sbjct: 138 -----RYGVQTQTRRHSYIASLLGIKHIVVAINKXDLNGFDERVFESIKADYLKFAEGIA 192
Query: 500 FQNINT--IPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557
F+ +P SAL GDN+++ S WY G +L +LE++ + LRFPVQ V
Sbjct: 193 FKPTTXAFVPXSALKGDNVVNKSERSPWYAGQSLXEILETVEIASDRNYTDLRFPVQYVN 252
Query: 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTL 617
R + +FRG+ G + SGI+ K D ++V PSGK + +K I L+ A GQ+VTL
Sbjct: 253 RP----NLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTL 308
Query: 618 IIKEYLDISRGNMLVSPFKRPVSLRSINANLCWLSEESLDLRRKYLLKHSTNQILSRILK 677
++ +DISRG++LV P + +A L W +EE +KY +K +T+ + I
Sbjct: 309 TXEDEIDISRGDLLVHADNVPQVSDAFDAXLVWXAEEPXLPGKKYDIKRATSYVPGSIAS 368
Query: 678 INALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVA 737
I +++NT + P L LN+IG V +++ PI++D Y + R+TG+FI+ID +T TVA
Sbjct: 369 ITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGTVA 428
Query: 738 AVYII 742
A II
Sbjct: 429 AGXII 433
>pdb|1ZUN|A Chain A, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 325
Score = 223 bits (569), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 170/297 (57%), Gaps = 8/297 (2%)
Query: 18 YLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGH 77
+L LE+E+IHI+REV+AE +NPV L+S GKDS V L LA KAF P + PFP+ H+DT
Sbjct: 27 HLKQLEAESIHIIREVAAEFDNPVXLYSIGKDSAVXLHLARKAFFPGKLPFPVXHVDTRW 86
Query: 78 NFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFK 137
F E FRD + + G LI D + +G + + ++ L + + +
Sbjct: 87 KFQEXYRFRDQXVEEXGLDLITHINPDGVAQGINPFTHGSAKHTDIXKTEGLKQALDKHG 146
Query: 138 FDACIGGXXXXXXXXXXXXXIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPIS 197
FDA GG ++SFRD +W+PK+QRPELWN+YN V+ GE+IRVFP+S
Sbjct: 147 FDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLS 206
Query: 198 NWTELDIWQYIEREKIILPSLYFAHXXXXXXXXGLLIP------FTNLTPAHPGEIIENL 251
NWTELDIWQYI E I + LYFA G LI +LT I++
Sbjct: 207 NWTELDIWQYIYLEGIPIVPLYFAAERDVIEKNGTLIMIDDERILEHLTDEEKSRIVKK- 265
Query: 252 MVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGATRIDDQNSEASMEKRKK 308
VRFRT+G T + S AT++ DII+E+ +T+ +ER R+ D + SME++K+
Sbjct: 266 KVRFRTLGCYPLTGAVESEATSLTDIIQEMLLTRTSERQG-RVIDHDGAGSMEEKKR 321
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 217/437 (49%), Gaps = 19/437 (4%)
Query: 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLES 384
L I G VD GKSTL+GRLL D FID+ + + + + + L D L+
Sbjct: 7 LNLIVIGHVDHGKSTLVGRLLMDRG--FIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKE 64
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
ERE+G+TI++ + F T K F I D PGH + +NMITGAS ADA I+++ A K ++
Sbjct: 65 ERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEA 124
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN--YNQIFYKRIVYAYKKFAEDIHFQN 502
+++ QT+ H I+A + + +I+AVNKMDL Y++ YK IV KF F
Sbjct: 125 GMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNT 184
Query: 503 --INTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHC 560
+ +P+ A +GDNI S NM WYNGPTL L+ L K KPLR P+Q V
Sbjct: 185 NKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYS-- 242
Query: 561 GHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIK 620
IS +GR+ESG++K D ++ P+GK ++ I+ + +D A G ++ ++
Sbjct: 243 --ISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVR 300
Query: 621 --EYLDISRGNMLVSPFKRPVSLRSINANL--CWLSEESLDLRRKYLLKHSTNQILSRIL 676
E DI RG+++ P P A + W + L H T + R+
Sbjct: 301 GVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVH-TASVACRVS 359
Query: 677 KINALLNINTQKWCP--PKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQ 734
++ + L+ T + P+ L D+ V +P+ V+ Y+ G F + D +
Sbjct: 360 ELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRD--MGK 417
Query: 735 TVAAVYIIGAGPGAADL 751
TV I+ P ++
Sbjct: 418 TVGVGIIVDVKPAKVEI 434
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 214/415 (51%), Gaps = 17/415 (4%)
Query: 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLES 384
+ + G VD GKSTL+G LL+ + +I++ + + + + + D ++
Sbjct: 7 MNLVVIGHVDHGKSTLVGHLLY--RLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKE 64
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
ERE+GITID+ + F T K F I D PGH + +NMITGAS ADA I+++ A K +F
Sbjct: 65 ERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEA 124
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL--INYNQIFYKRIVYAYKKFAEDIHFQ- 501
++ QT+ H ++A + I+ II+AVNKMD +NY+Q Y+ +V KKF + + +Q
Sbjct: 125 GMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQV 184
Query: 502 -NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHC 560
I IP+SA GDN+I S NM WYNGPTL+ L+ L K KPLR PVQ V
Sbjct: 185 DKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIP 244
Query: 561 GHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIK 620
G + +GR+E+G+++ D ++ P G ++ I+M + L A G ++ ++
Sbjct: 245 GAGTVP----VGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVR 300
Query: 621 --EYLDISRGNMLVSPFKRPVSLRSINANL--CWLSEESLDLRRKYLLKHSTNQILSRIL 676
DI RG++ K P A + W ++ + ++ T + SRI+
Sbjct: 301 GVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVIW-HPSAITVGYTPVIHVHTASVSSRII 359
Query: 677 KINALLNINTQKWCP--PKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILID 729
+I A L+ T + P+ L D V +P+ V+ + I G F + D
Sbjct: 360 EIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRD 414
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 214/415 (51%), Gaps = 17/415 (4%)
Query: 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLES 384
+ + G VD GKSTL+G LL+ + +I++ + + + + + D ++
Sbjct: 10 MNLVVIGHVDHGKSTLVGHLLY--RLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKE 67
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
ERE+GITID+ + F T K F I D PGH + +NMITGAS ADA I+++ A K +F
Sbjct: 68 ERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEA 127
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL--INYNQIFYKRIVYAYKKFAEDIHFQ- 501
++ QT+ H ++A + I+ II+AVNKMD +NY+Q Y+ +V KKF + + +Q
Sbjct: 128 GMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQV 187
Query: 502 -NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHC 560
I IP+SA GDN+I S NM WYNGPTL+ L+ L K KPLR PVQ V
Sbjct: 188 DKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIP 247
Query: 561 GHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIK 620
G + +GR+E+G+++ D ++ P G ++ I+M + L A G ++ ++
Sbjct: 248 GAGTVP----VGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVR 303
Query: 621 --EYLDISRGNMLVSPFKRPVSLRSINANL--CWLSEESLDLRRKYLLKHSTNQILSRIL 676
DI RG++ K P A + W ++ + ++ T + SRI+
Sbjct: 304 GVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVIW-HPSAITVGYTPVIHVHTASVSSRII 362
Query: 677 KINALLNINTQKWCP--PKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILID 729
+I A L+ T + P+ L D V +P+ V+ + I G F + D
Sbjct: 363 EIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRD 417
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/445 (28%), Positives = 212/445 (47%), Gaps = 34/445 (7%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
K+ S + + G VD GKST G L++ I D+ K + + + +
Sbjct: 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAAELGKGSFKYAWVL 60
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D L++ERE+GITID+A F TPK + + D PGH + +NMITG S AD I++I
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+F ++ QT+ H+++A L ++ +I+AVNKMD + +++ ++ IV F + +
Sbjct: 121 GEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG 180
Query: 500 F--QNINTIPISALNGDNIISASNNMLWY------------NGPTLISLLESLNTNEKID 545
+ + + +PIS NGDN+I A+ N WY G TL+ ++++ +
Sbjct: 181 YNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPT 240
Query: 546 KKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKS 605
KPLR P+Q V + G + +GR+E+G+IK + P+G +K ++M ++
Sbjct: 241 DKPLRLPLQDVYKIGGIGTVP----VGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQ 296
Query: 606 LDMAITGQSVTLIIK--EYLDISRGNMLV-SPFKRPVSLRSINANLCWLSEES-LDLRRK 661
L+ + G +V +K +I RGN+ + P S NA + L+ +
Sbjct: 297 LEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYS 356
Query: 662 YLLKHSTNQILSRILKINALLNINTQKWCP-----PKLLDLNDIGCVTINIYEPISVDSY 716
+L T I R + LL N ++ PK L D V +P+ V+++
Sbjct: 357 PVLDCHTAHIACR---FDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAF 413
Query: 717 DNIRSTGSFILIDEITFQTVAAVYI 741
G F + D QTVA I
Sbjct: 414 SEYPPLGRFAVRD--MRQTVAVGVI 436
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 201/404 (49%), Gaps = 37/404 (9%)
Query: 289 RGATRIDDQNSEASMEKRKKTEAPEKKQ-----SVFKKHSL--LRFITAGSVDDGKSTLI 341
G ++ N E ++++ KT P K + S F K +L L F+ G VD GKSTL+
Sbjct: 125 EGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLM 184
Query: 342 GRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401
GRLL+D + QL + R M + + + D ERE+G+T+ + +F+T
Sbjct: 185 GRLLYDLNIVNQSQLRKLQRES--ETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242
Query: 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL 461
+ F I D PGH + N I G S AD I+ +D S F +L QTK H ++A
Sbjct: 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS 302
Query: 462 LRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF--QNINTIPISALNGDNI--I 517
L I ++IIA+NKMD ++++Q ++ I + DI F NIN +PIS +G+ + I
Sbjct: 303 LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362
Query: 518 SASNNM-LWYNGPTLISLLESL-----NTNEKIDK-KPLRFPVQLVARHCGHISKDFRGY 570
++ + WYNGP L+S LE+ NE I+K P F V L S D
Sbjct: 363 EYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV-LEIIPSKKTSNDLALV 421
Query: 571 MGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNK--------SLDMAITGQSVTLIIKEY 622
G++ESG I+ + L + PS + + IQ+ ++ D+AI G VTL +++
Sbjct: 422 SGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 481
Query: 623 L--DISRGNMLVSPFKRPVSLRSINANLCWLSE-ESLDLRRKYL 663
DI G++ S V SI++ C++ E + D+ R L
Sbjct: 482 YPEDIQNGDLAAS-----VDYSSIHSAQCFVLELTTFDMNRPLL 520
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/393 (32%), Positives = 197/393 (50%), Gaps = 37/393 (9%)
Query: 300 EASMEKRKKTEAPEKKQ-----SVFKKHSL--LRFITAGSVDDGKSTLIGRLLFDSKNIF 352
E ++++ KT P K + S F K +L L F+ G VD GKSTL+GRLL+D +
Sbjct: 2 EKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVN 61
Query: 353 IDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTP 412
QL + R M + + + D ERE+G+T+ + +F+T + F I D P
Sbjct: 62 QSQLRKLQRES--ETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAP 119
Query: 413 GHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472
GH + N I G S AD I+ +D S F +L QTK H ++A L I ++IIA+N
Sbjct: 120 GHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 179
Query: 473 KMDLINYNQIFYKRIVYAYKKFAEDIHF--QNINTIPISALNGDNI--ISASNNM-LWYN 527
KMD ++++Q ++ I + DI F NIN +PIS +G+ + I ++ + WYN
Sbjct: 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYN 239
Query: 528 GPTLISLLESL-----NTNEKIDK-KPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKK 581
GP L+S LE+ NE I+K P F V L S D G++ESG I+
Sbjct: 240 GPNLMSTLENAAFKISKENEGINKDDPFLFSV-LEIIPSKKTSNDLALVSGKLESGSIQP 298
Query: 582 NDCLIVEPSGKKATIKDIQMLNKS--------LDMAITGQSVTLIIKEYL--DISRGNML 631
+ L + PS + + IQ+ ++ D+AI G VTL +++ DI G++
Sbjct: 299 GESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLA 358
Query: 632 VSPFKRPVSLRSINANLCWLSE-ESLDLRRKYL 663
S V SI++ C++ E + D+ R L
Sbjct: 359 AS-----VDYSSIHSAQCFVLELTTFDMNRPLL 386
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 162 bits (411), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 126/393 (32%), Positives = 191/393 (48%), Gaps = 37/393 (9%)
Query: 300 EASMEKRKKTEAPEKKQ-----SVFKKHSL--LRFITAGSVDDGKSTLIGRLLFDSKNIF 352
E ++++ KT P K + S F K +L L F+ G VD GKSTL GRLL+D +
Sbjct: 2 EKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLXGRLLYDLNIVN 61
Query: 353 IDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTP 412
QL + R + + + D ERE+G+T+ + +F+T + F I D P
Sbjct: 62 QSQLRKLQRES--ETXGKSSFKFAWIXDQTNEERERGVTVSICTSHFSTHRANFTIVDAP 119
Query: 413 GHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472
GH + N I G S AD I+ +D S F +L QTK H ++A L I ++IIA N
Sbjct: 120 GHRDFVPNAIXGISQADXAILCVDCSTNAFESGFDLDGQTKEHXLLASSLGIHNLIIAXN 179
Query: 473 KMDLINYNQIFYKRIVYAYKKFAEDIHF--QNINTIPISALNGDNI--ISASNNM-LWYN 527
K D ++++Q ++ I + DI F NIN +PIS +G+ + I ++ + WYN
Sbjct: 180 KXDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYN 239
Query: 528 GPTLISLLESL-----NTNEKIDK-KPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKK 581
GP L S LE+ NE I+K P F V L S D G++ESG I+
Sbjct: 240 GPNLXSTLENAAFKISKENEGINKDDPFLFSV-LEIIPSKKTSNDLALVSGKLESGSIQP 298
Query: 582 NDCLIVEPSGKKATIKDIQMLNK--------SLDMAITGQSVTLIIKEYL--DISRGNML 631
+ L + PS + + IQ+ ++ D+AI G VTL +++ DI G++
Sbjct: 299 GESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLA 358
Query: 632 VSPFKRPVSLRSINANLCWLSE-ESLDLRRKYL 663
S V SI++ C++ E + D R L
Sbjct: 359 AS-----VDYSSIHSAQCFVLELTTFDXNRPLL 386
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 203/371 (54%), Gaps = 30/371 (8%)
Query: 285 QITERGATRIDDQNSEASMEKRKKTE---APEKKQSVFKKHS---LLRFITAGSVDDGKS 338
++ + ++ D+Q + ++K+ T+ PE +F++ + ++ + G VD GKS
Sbjct: 136 EVKMKNSSESDNQPEKKKIKKQNPTDLVSVPE----IFEQSNPKPVVHLVVTGHVDSGKS 191
Query: 339 TLIGRLLFDSKNIFIDQLDAVSRTKY--KRVMSGH-NIDLSLLTDGLESEREQGITIDVA 395
T++GR++F+ + ++++ S K + SG + + L D E ER +G+T+DVA
Sbjct: 192 TMLGRIMFE-----LGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVA 246
Query: 396 YRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRH 455
F + K+ + I D PGH + MI GAS+AD ++++D+S+ F QT+ H
Sbjct: 247 STTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH 306
Query: 456 SIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFA-EDIHFQ--NINTIPISALN 512
+ + L I I+++VNK+DL+++++ ++ I F + + F+ N++ +PISA++
Sbjct: 307 AYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAIS 366
Query: 513 GDNIISASNNML--WYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHISKDFRGY 570
G N+I ++ L WY GPTL+S L+ L EK +KPLR + V R ++
Sbjct: 367 GTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVT-----V 421
Query: 571 MGRIESGIIKKNDCLIVEPSGKKATIKD-IQMLNKSLDMAITGQSVTLIIKE-YLDISRG 628
GR+E+G ++ N L S + A +K+ I+ + S A+ G +VTL + + ++ R
Sbjct: 422 TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRP 481
Query: 629 NMLVSPFKRPV 639
++S ++ PV
Sbjct: 482 GDILSNYENPV 492
>pdb|1PJQ|A Chain A, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJQ|B Chain B, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJS|A Chain A, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
pdb|1PJS|B Chain B, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
Length = 457
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 3/226 (1%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPK-AKHIFVGKRFKKHSI 797
V ++GAGPG A L+T++G + +++AD+V+YD L++++++ L + A +FVGKR H +
Sbjct: 218 VVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCV 277
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
Q IN+I+++ A K VVRLKGGDP +FGR EEL L I V+PGITAA +
Sbjct: 278 PQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCS 337
Query: 858 SESKQSLTKRNISRSVVLFTS--STMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKL 915
+ S LT R+ ++SV L T T + ++ TLV YMG N +KL+
Sbjct: 338 AYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIAF 397
Query: 916 GFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGK 961
G PV +VEN + Q++ +L L + Q E P L ++G+
Sbjct: 398 GMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGR 443
>pdb|1PJT|A Chain A, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
pdb|1PJT|B Chain B, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
Length = 457
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 3/226 (1%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPK-AKHIFVGKRFKKHSI 797
V ++GAGPG A L+T++G + +++AD+V+YD L++++++ L + A +FVGKR H +
Sbjct: 218 VVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCV 277
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
Q IN+I+++ A K VVRLKGGDP +FGR EEL L I V+PGITAA +
Sbjct: 278 PQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCS 337
Query: 858 SESKQSLTKRNISRSVVLFTS--STMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKL 915
+ S LT R+ ++SV L T T + ++ TLV YMG N +KL+
Sbjct: 338 AYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIAF 397
Query: 916 GFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGK 961
G PV +VEN + Q++ +L L + Q E P L ++G+
Sbjct: 398 GMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGR 443
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 204/435 (46%), Gaps = 28/435 (6%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
K+H + FI G VD GKSTL G +LF + + ++ + R + + LS
Sbjct: 41 KEHVNIVFI--GHVDAGKSTLGGNILFLTGMVDKRTMEKIEREA--KEAGKESWYLSWAL 96
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D ERE+G T++V YF T R+F + D PGH+ Y NMI GAS AD +++I A +
Sbjct: 97 DSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARR 156
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD--LINYNQIFYKRIVYAYKKFAED 497
+F QT+ H+++A I H+++ +NKMD + +++ YK V F
Sbjct: 157 GEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRR 216
Query: 498 IHFQNINT----IPISALNGDNIISASNNML--WYNGPTLISLLESLNTNEKIDKKPLRF 551
+ N T +P+SA G N+ ++ + WY GP+L+ L+S+ E+ P
Sbjct: 217 VAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIM 276
Query: 552 PVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDI-QMLNKSLDMAI 610
P+ + G I + G+IE+G IKKN ++V P + + I ++ + +I
Sbjct: 277 PIASKYKDLGTILE------GKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSI 330
Query: 611 TGQSVTLIIK-EYLDISRGNMLVSPFKRPV--SLRSINANLCWLSEESLDLRRKY---LL 664
G V L ++ + D+ G +L S K PV + R I A + L S+ L Y +
Sbjct: 331 CGDQVRLRVRGDDSDVQTGYVLTST-KNPVHATTRFI-AQIAILELPSI-LTTGYSCVMH 387
Query: 665 KHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGS 724
H+ + +S ++ L N + PP + P+ ++ +++ + G
Sbjct: 388 IHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGR 447
Query: 725 FILIDEITFQTVAAV 739
F L D+ T V V
Sbjct: 448 FTLRDQGTTVAVGKV 462
>pdb|2YBQ|A Chain A, The X-Ray Structure Of The Sam-Dependent Uroporphyrinogen
Iii Methyltransferase Nire From Pseudomonas Aeruginosa
In Complex With Sah And Uroporphyrinogen Iii
Length = 292
Score = 144 bits (362), Expect = 3e-34, Method: Composition-based stats.
Identities = 84/234 (35%), Positives = 138/234 (58%), Gaps = 11/234 (4%)
Query: 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKA-KHIFVGKRFKKH 795
+V ++GAGPG L+T+R LL++A+VV+YD L+ EL+ L P++ + I+VGKR H
Sbjct: 23 GSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHH 82
Query: 796 SIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALA 855
S+ Q IN ++V+ A + VVRLKGGDP +FGR EEL L + + +V+PG+TAA
Sbjct: 83 SLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASG 142
Query: 856 AASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPIS------DTLVEYMGGNNIFLTA 909
++ + LT R++++S T L+N+ ++ + TLV YMG N+ A
Sbjct: 143 CSTYAGIPLTHRDLAQSCTFVTGH--LQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIA 200
Query: 910 KKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLK--KKIFQFEKPVLFMIGK 961
+L++ G TP +V + + Q++TR L +L + +Q + P L ++G+
Sbjct: 201 ARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQ 254
>pdb|2YBO|A Chain A, The X-Ray Structure Of The Sam-Dependent Uroporphyrinogen
Iii Methyltransferase Nire From Pseudomonas Aeruginosa
In Complex With Sah
Length = 294
Score = 144 bits (362), Expect = 3e-34, Method: Composition-based stats.
Identities = 84/234 (35%), Positives = 138/234 (58%), Gaps = 11/234 (4%)
Query: 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKA-KHIFVGKRFKKH 795
+V ++GAGPG L+T+R LL++A+VV+YD L+ EL+ L P++ + I+VGKR H
Sbjct: 25 GSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHH 84
Query: 796 SIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALA 855
S+ Q IN ++V+ A + VVRLKGGDP +FGR EEL L + + +V+PG+TAA
Sbjct: 85 SLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASG 144
Query: 856 AASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPIS------DTLVEYMGGNNIFLTA 909
++ + LT R++++S T L+N+ ++ + TLV YMG N+ A
Sbjct: 145 CSTYAGIPLTHRDLAQSCTFVTGH--LQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIA 202
Query: 910 KKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLK--KKIFQFEKPVLFMIGK 961
+L++ G TP +V + + Q++TR L +L + +Q + P L ++G+
Sbjct: 203 ARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQ 256
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 203/427 (47%), Gaps = 32/427 (7%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNID---LS 376
K+H + FI G VD GKST+ G++++ +D + KY+R N + LS
Sbjct: 15 KEHVNVVFI--GHVDAGKSTIGGQIMY-----LTGMVDKRTLEKYEREAKEKNRETWYLS 67
Query: 377 LLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILID 436
D + ER++G T++V YF T K+ F I D PGH+ + NMI GAS AD +++I
Sbjct: 68 WALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVIS 127
Query: 437 ASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD--LINYNQIFYKRIVYAYKKF 494
A K +F QT+ H+++A +KH+I+ +NKMD +N++ Y+ F
Sbjct: 128 ARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPF 187
Query: 495 AEDIHF---QNINTIPISALNGDNIISASNNMLWYNGPTLISLLESL-NTNEKIDKKPLR 550
+ + F ++I+ +P S L G N+ S+ WY G I L++L N N +D P+R
Sbjct: 188 LKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVD-GPIR 246
Query: 551 FPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAI 610
P+ + G + +G++ESG I K L++ P+ + I + D
Sbjct: 247 LPIVDKYKDMGTV------VLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVA 300
Query: 611 TGQSVTLIIK--EYLDISRGNMLVSPFKRPVSLRSINANLCWLSEESLDLRRKYLLKHST 668
G+++ + +K E +I G +L P S R+ + + + +S+ + H
Sbjct: 301 PGENLKIRLKGIEEEEILPGFILCDPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIH 360
Query: 669 NQILSRILKINALLNINTQKWCP-----PKLLDLNDIGCVTINIYEPISVDSYDNIRSTG 723
I ++I AL+++ +K P+ + + + + I ++++ + G
Sbjct: 361 TCIEE--VEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMG 418
Query: 724 SFILIDE 730
F L DE
Sbjct: 419 RFTLRDE 425
>pdb|1S4D|A Chain A, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|B Chain B, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|D Chain D, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|E Chain E, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|F Chain F, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|G Chain G, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|H Chain H, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|I Chain I, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|J Chain J, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|K Chain K, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|L Chain L, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
pdb|1S4D|M Chain M, Crystal Structure Analysis Of The S-adenosyl-l-methionine
Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
Length = 280
Score = 113 bits (282), Expect = 6e-25, Method: Composition-based stats.
Identities = 76/236 (32%), Positives = 122/236 (51%), Gaps = 8/236 (3%)
Query: 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLC-PKAKHIFVGKRFKKH 795
+V+++GAGPG L+T+ A LR+ADV+++DAL+ + L L P A F GKR K
Sbjct: 15 GSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKP 74
Query: 796 SIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALA 855
S Q I+ +V+ A N V+RLKGGDP +FGR EE L ++ + +++PGITA +
Sbjct: 75 SPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIG 134
Query: 856 AASESKQSLTKRNISRSVVLFT---SSTMLKN--NYLKNIPISDTLVEYMGGNNIFLTAK 910
+ + +T R ++ +V T SS ++ + N+ S +V YM +I
Sbjct: 135 GLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDRINWQGIASGSPVIVMYMAMKHIGAITA 194
Query: 911 KLLKLGFLPTTPVIVVENCSLSNQKI--TRLILLDLKKKIFQFEKPVLFMIGKSLK 964
L+ G P PV V N + Q + T L + E P + ++G+ ++
Sbjct: 195 NLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVR 250
>pdb|1V9A|A Chain A, Crystal Structure Of Uroporphyrin-Iii C-Methyl Transferase
From Thermus Thermophilus Complexed With S-Adenyl
Homocysteine
pdb|1V9A|B Chain B, Crystal Structure Of Uroporphyrin-Iii C-Methyl Transferase
From Thermus Thermophilus Complexed With S-Adenyl
Homocysteine
pdb|1VA0|A Chain A, Crystal Structure Of The Native Form Of Uroporphyrin Iii
C-Methyl Transferase From Thermus Thermophilus
pdb|1VA0|B Chain B, Crystal Structure Of The Native Form Of Uroporphyrin Iii
C-Methyl Transferase From Thermus Thermophilus
Length = 239
Score = 106 bits (265), Expect = 5e-23, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 128/228 (56%), Gaps = 9/228 (3%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIA 798
VY++GAGPG +L+T++ RLL++A VVLYD L+ +L L P K ++VGK + S
Sbjct: 3 VYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLALAPGEK-VYVGKE-EGESEK 60
Query: 799 QYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAAS 858
Q I+R++++ A + VVRLKGGDPM+FGR EE+ L ++ + V+V+PG+T+ LA
Sbjct: 61 QEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLA--- 117
Query: 859 ESKQSLTKRNISRSVVLFTSSTMLKNNY--LKNIPISDTLVEYMGGNNIFLTAKKLLKLG 916
S LT R ++ S + Y L+ TLV MG AK+LL+LG
Sbjct: 118 -SGLPLTHRGLAHGFAA-VSGVLEGGGYPDLRPFARVPTLVVLMGVGRRVWIAKELLRLG 175
Query: 917 FLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLK 964
P P + VE S ++ L ++ + + P L+++G+ ++
Sbjct: 176 RDPREPTLFVERASTPKERRVHARLEEVAEGKVEVRPPALWILGEVVR 223
>pdb|1VE2|A Chain A, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
pdb|1VE2|B Chain B, Crystal Structure Of Uroporphyrin-Iii-C-Methyltransferase
From Thermus Thermophilus
Length = 235
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 7/223 (3%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIA 798
VY++GAG G + +T++ R+L A+VVL+D L+ +L L K + + VGK
Sbjct: 5 VYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALA-KGELVPVGKEGYGGKTP 63
Query: 799 QYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAAS 858
Q I ++ A + +V RLKGGDPM+FGR EE AL++ I +V+PG+T+A+ A S
Sbjct: 64 QEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALS 123
Query: 859 ESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFL 918
LT R ++RS + T ++ +P +DTLV M + + ++LL+ F
Sbjct: 124 ALGLPLTHRGLARSFAVATG-----HDPALPLPRADTLVLLMPLHTLGGLKERLLER-FP 177
Query: 919 PTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGK 961
P TP+ ++ + + + DL P L ++GK
Sbjct: 178 PETPLALLARVGWPGEAVRLGRVEDLPGLGEGLPSPALLVVGK 220
>pdb|4E16|A Chain A, Precorrin-4 C(11)-Methyltransferase From Clostridium
Difficile
Length = 253
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 26/243 (10%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSI 797
V+ +GAGPG +LIT++G +LL ADVV+Y +L+ ELL C + I H
Sbjct: 7 VHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQI----HNSAHMD 62
Query: 798 AQYIINRIIVKCAFKYN-LVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAA 856
Q II+ +++ + N VVRL+ GD ++G E++ L K NI PG+++ L A
Sbjct: 63 LQEIID--VMREGIENNKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGA 120
Query: 857 ASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNN---IFLTAK--- 910
AS T IS+SV++ T ++ +P +++ Y IFL+ +
Sbjct: 121 ASSLGVEYTVPEISQSVII----TRMEGR--TPVPEKESIQSYAKHQTSMVIFLSVQEIE 174
Query: 911 ----KLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQ--FEKPVLFMIGKSLK 964
KLL+ G+ TP+ V+ + +++KI + L D+ K+ + K L M+G+ L
Sbjct: 175 KVVSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMVGRFLG 234
Query: 965 SHY 967
Y
Sbjct: 235 EEY 237
>pdb|1CBF|A Chain A, The X-ray Structure Of A Cobalamin Biosynthetic Enzyme,
Cobalt Precorrin-4 Methyltransferase, Cbif
Length = 285
Score = 92.4 bits (228), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 118/219 (53%), Gaps = 26/219 (11%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSI 797
+YIIGAGPG DLITV+G +LL++ADVVLY D+L++ +L+ + +
Sbjct: 23 LYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEM 82
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
+++R+ + +VVR+ GDP ++G E++ LK+ + ++++PG+T+ AAA
Sbjct: 83 VGTMLDRM-----REGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAA 137
Query: 858 SESKQSLTKRNISRSVVLFTS------------STMLKNNYLKNIPISDTLVEYMGGNNI 905
+ ++ LT +++++V+L + + + K+ + +S TL + +
Sbjct: 138 AAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKKV----- 192
Query: 906 FLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDL 944
K+ + G+ TPV+VV + ++KI R + DL
Sbjct: 193 ---MKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDL 228
>pdb|2CBF|A Chain A, The X-Ray Structure Of A Cobalamin Biosynthetic Enzyme,
Cobalt Precorrin-4 Methyltransferase, Cbif, From
Bacillus Megaterium, With The His-Tag Cleaved Off
Length = 234
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 118/219 (53%), Gaps = 26/219 (11%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSI 797
+YIIGAGPG DLITV+G +LL++ADVVLY D+L++ +L+ + +
Sbjct: 6 LYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEM 65
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
+++R+ + +VVR+ GDP ++G E++ LK+ + ++++PG+T+ AAA
Sbjct: 66 VGTMLDRM-----REGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAA 120
Query: 858 SESKQSLTKRNISRSVVLFTS------------STMLKNNYLKNIPISDTLVEYMGGNNI 905
+ ++ LT +++++V+L + + + K+ + +S TL + +
Sbjct: 121 AAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKKV----- 175
Query: 906 FLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDL 944
K+ + G+ TPV+VV + ++KI R + DL
Sbjct: 176 ---MKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDL 211
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 147/321 (45%), Gaps = 54/321 (16%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL + + + KY+ + D ER +
Sbjct: 8 TIGHVDHGKTTLTAAI-----TKILAEGGGAKFKKYEEI------------DNAPEERAR 50
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ ++T R + D PGH Y +NMITG + D I+++ A+
Sbjct: 51 GITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND-------GP 103
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + ++H+++ VNK D + +++ + + ++ + ++ T PI
Sbjct: 104 MPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMV-ELVELEIRELLTEFGYKGEET-PI 161
Query: 509 SALNGDNIISASNNMLWYNGPTL-----ISLLESLNTNEKID----KKPLRFPVQLVARH 559
I+ ++ L P L LL++++T + +KP PV+ V
Sbjct: 162 -------IVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSI 214
Query: 560 CGHISKDFRGYM--GRIESGIIKKND-CLIVEPSGK-KATIKDIQMLNKSLDMAITGQSV 615
G RG + G +E GI+KK D C + S + + I+M +KSLD A G ++
Sbjct: 215 PG------RGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNL 268
Query: 616 TLIIK--EYLDISRGNMLVSP 634
+++ + D+ RG ++ P
Sbjct: 269 GALVRGLKREDLRRGLVMAKP 289
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 145/325 (44%), Gaps = 52/325 (16%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL L F V+ + V D+ D ER +
Sbjct: 16 TIGHVDHGKTTLTAALTF------------VTAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GP 112
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F + +P+
Sbjct: 113 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-DEVPV 170
Query: 509 ---SALNG-----DNIISASNNMLWYNGPTLISLLESLN----TNEKIDKKPLRFPVQLV 556
SAL N + W + + LL++++ T + KP PV+ V
Sbjct: 171 IRGSALLALEEMHKNPKTKRGENEWVD--KIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 557 ARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNKSLDMAIT 611
G RG + GRIE G +K D + + P +K + ++M K+L I
Sbjct: 229 FTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIA 282
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G +V L+++ ++ RG +L P
Sbjct: 283 GDNVGLLLRGVSREEVERGQVLAKP 307
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 145/325 (44%), Gaps = 52/325 (16%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL L + A + V +ID + ER +
Sbjct: 16 TIGHVDHGKTTLTAALTYV----------AAAENPNVEVKDYGDIDKA------PEERAR 59
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GP 112
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F + +P+
Sbjct: 113 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-DEVPV 170
Query: 509 ---SALNG-----DNIISASNNMLWYNGPTLISLLESLN----TNEKIDKKPLRFPVQLV 556
SAL N + W + + LL++++ T + KP PV+ V
Sbjct: 171 IRGSALLALEEMHKNPKTKRGENEWVD--KIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 557 ARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNKSLDMAIT 611
G RG + GRIE G +K D + + P +K + ++M K+L I
Sbjct: 229 FTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIA 282
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G +V L+++ ++ RG +L P
Sbjct: 283 GDNVGLLLRGVSREEVERGQVLAKP 307
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 145/325 (44%), Gaps = 52/325 (16%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL L + A + V +ID + ER +
Sbjct: 16 TIGHVDHGKTTLTAALTYV----------AAAENPNVEVKDYGDIDKA------PEERAR 59
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GP 112
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F + +P+
Sbjct: 113 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-DEVPV 170
Query: 509 ---SALNG-----DNIISASNNMLWYNGPTLISLLESLN----TNEKIDKKPLRFPVQLV 556
SAL N + W + + LL++++ T + KP PV+ V
Sbjct: 171 IRGSALLALEEMHKNPKTKRGENEWVD--KIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 228
Query: 557 ARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNKSLDMAIT 611
G RG + GRIE G +K D + + P +K + ++M K+L I
Sbjct: 229 FTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIA 282
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G +V L+++ ++ RG +L P
Sbjct: 283 GDNVGLLLRGVSREEVERGQVLAKP 307
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 144/328 (43%), Gaps = 58/328 (17%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL L F V+ + V D+ D ER +
Sbjct: 16 TIGHVDHGKTTLTAALTF------------VTAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GP 112
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F + +P+
Sbjct: 113 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-DEVPV 170
Query: 509 SALNGDNIISASN---------------NMLWYNGPTLISLLESLNTNEKIDKKPLRFPV 553
+ G +++ + +W L ++ E + T + KP PV
Sbjct: 171 --IRGSALLALEQMHRNPKTRRGENEWVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPV 225
Query: 554 QLVARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNKSLDM 608
+ V G RG + GRIE G +K D + + P +K + ++M K+L
Sbjct: 226 EDVFTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQE 279
Query: 609 AITGQSVTLIIK--EYLDISRGNMLVSP 634
I G +V ++++ ++ RG +L P
Sbjct: 280 GIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 144/328 (43%), Gaps = 58/328 (17%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL L + A + V +ID + ER +
Sbjct: 16 TIGHVDHGKTTLTAALTYV----------AAAENPNVEVKDYGDIDKA------PEERAR 59
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GP 112
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F + +P+
Sbjct: 113 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-DEVPV 170
Query: 509 SALNGDNIISASN---------------NMLWYNGPTLISLLESLNTNEKIDKKPLRFPV 553
+ G +++ + +W L ++ E + T + KP PV
Sbjct: 171 --IRGSALLALEQMHRNPKTRRGENEWVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPV 225
Query: 554 QLVARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNKSLDM 608
+ V G RG + GRIE G +K D + + P +K + ++M K+L
Sbjct: 226 EDVFTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQE 279
Query: 609 AITGQSVTLIIK--EYLDISRGNMLVSP 634
I G +V ++++ ++ RG +L P
Sbjct: 280 GIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 144/328 (43%), Gaps = 58/328 (17%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL L + A + V +ID + ER +
Sbjct: 16 TIGHVDHGKTTLTAALTYV----------AAAENPNVEVKDYGDIDKA------PEERAR 59
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GP 112
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F + +P+
Sbjct: 113 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-DEVPV 170
Query: 509 SALNGDNIISASN---------------NMLWYNGPTLISLLESLNTNEKIDKKPLRFPV 553
+ G +++ + +W L ++ E + T + KP PV
Sbjct: 171 --IRGSALLALEQMHRNPKTRRGENEWVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPV 225
Query: 554 QLVARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNKSLDM 608
+ V G RG + GRIE G +K D + + P +K + ++M K+L
Sbjct: 226 EDVFTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQE 279
Query: 609 AITGQSVTLIIK--EYLDISRGNMLVSP 634
I G +V ++++ ++ RG +L P
Sbjct: 280 GIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 144/328 (43%), Gaps = 58/328 (17%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL L + V+ + V D+ D ER +
Sbjct: 16 TIGHVDHGKTTLTAALTY------------VTAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GP 112
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F + +P+
Sbjct: 113 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-DEVPV 170
Query: 509 SALNGDNIISASN---------------NMLWYNGPTLISLLESLNTNEKIDKKPLRFPV 553
+ G +++ + +W L ++ E + T + KP PV
Sbjct: 171 --IRGSALLALEQMHRNPKTRRGENEWVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPV 225
Query: 554 QLVARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNKSLDM 608
+ V G RG + GRIE G +K D + + P +K + ++M K+L
Sbjct: 226 EDVFTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQE 279
Query: 609 AITGQSVTLIIK--EYLDISRGNMLVSP 634
I G +V ++++ ++ RG +L P
Sbjct: 280 GIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 144/328 (43%), Gaps = 58/328 (17%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL L + A + V +ID + ER +
Sbjct: 16 TIGHVDHGKTTLTAALTYV----------AAAENPNVEVKDYGDIDKA------PEERAR 59
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GP 112
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F + +P+
Sbjct: 113 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-DEVPV 170
Query: 509 SALNGDNIISASN---------------NMLWYNGPTLISLLESLNTNEKIDKKPLRFPV 553
+ G +++ + +W L ++ E + T + KP PV
Sbjct: 171 --IRGSALLALEQMHRNPKTRRGENEWVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPV 225
Query: 554 QLVARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNKSLDM 608
+ V G RG + GRIE G +K D + + P ++ + ++M K+L
Sbjct: 226 EDVFTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQE 279
Query: 609 AITGQSVTLIIK--EYLDISRGNMLVSP 634
I G +V ++++ ++ RG +L P
Sbjct: 280 GIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 144/328 (43%), Gaps = 58/328 (17%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
T G VD GK+TL L + A + V +ID + ER +
Sbjct: 17 TIGHVDHGKTTLTAALTYV----------AAAENPNVEVKDYGDIDKA------PEERAR 60
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 61 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GP 113
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F + +P+
Sbjct: 114 MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-DEVPV 171
Query: 509 SALNGDNIISASN---------------NMLWYNGPTLISLLESLNTNEKIDKKPLRFPV 553
+ G +++ + +W L ++ E + T + KP PV
Sbjct: 172 --IRGSALLALEQMHRNPKTRRGENEWVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPV 226
Query: 554 QLVARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNKSLDM 608
+ V G RG + GRIE G +K D + + P ++ + ++M K+L
Sbjct: 227 EDVFTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQE 280
Query: 609 AITGQSVTLIIK--EYLDISRGNMLVSP 634
I G +V ++++ ++ RG +L P
Sbjct: 281 GIAGDNVGVLLRGVSREEVERGQVLAKP 308
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 144/332 (43%), Gaps = 66/332 (19%)
Query: 329 TAGSVDDGKSTLIGRLLF----DSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLES 384
T G VD GK+TL L + ++ N+ + + +
Sbjct: 16 TIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAP--------------------E 55
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
ER +GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 56 ERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD----- 110
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNIN 504
+ QT+ H ++A + + +I++ +NK+D+++ ++ + + F +
Sbjct: 111 --GPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYEFPG-D 166
Query: 505 TIPISALNGDNIISASN---------------NMLWYNGPTLISLLESLNTNEKIDKKPL 549
+P+ + G +++ + +W L ++ E + T + KP
Sbjct: 167 EVPV--IRGSALLALEQMHRNPKTRRGENEWVDKIWE---LLDAIDEYIPTPVRDVDKPF 221
Query: 550 RFPVQLVARHCGHISKDFRGYM--GRIESGIIKKND---CLIVEPSGKKATIKDIQMLNK 604
PV+ V G RG + GRIE G +K D + + P ++ + ++M K
Sbjct: 222 LMPVEDVFTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRK 275
Query: 605 SLDMAITGQSVTLIIK--EYLDISRGNMLVSP 634
+L I G +V ++++ ++ RG +L P
Sbjct: 276 TLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D E+ +GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 335 DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 394
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++
Sbjct: 395 -------GPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYD 446
Query: 500 FQNINTIPISALNGDNIISASNNMLWYNG-PTLISLLES-LNTNEKIDKKPLRFPVQLVA 557
F +T PI + G + + + W L L+S + E+ KP P++ V
Sbjct: 447 FPGDDT-PI--VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVF 503
Query: 558 RHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAIT 611
G RG + GR+E GIIK + VE G +K+T ++M K LD
Sbjct: 504 SISG------RGTVVTGRVERGIIKVGE--EVEIVGIKETQKSTCTGVEMFRKLLDEGRA 555
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G++V ++++ + +I RG +L P
Sbjct: 556 GENVGVLLRGIKREEIERGQVLAKP 580
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D E+ +GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 51 DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 110
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++
Sbjct: 111 -------GPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYD 162
Query: 500 FQNINTIPISALNGDNIISASNNMLWYNGP-TLISLLES-LNTNEKIDKKPLRFPVQLVA 557
F +T PI + G + + + W L L+S + E+ KP P++ V
Sbjct: 163 FPGDDT-PI--VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVF 219
Query: 558 RHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAIT 611
G RG + GR+E GIIK + VE G +K+T ++M K LD
Sbjct: 220 SISG------RGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRA 271
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G++V ++++ + +I RG +L P
Sbjct: 272 GENVGVLLRGIKREEIERGQVLAKP 296
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D E+ +GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 42 DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 101
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++
Sbjct: 102 -------GPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYD 153
Query: 500 FQNINTIPISALNGDNIISASNNMLWYNGP-TLISLLES-LNTNEKIDKKPLRFPVQLVA 557
F +T PI + G + + + W L L+S + E+ KP P++ V
Sbjct: 154 FPGDDT-PI--VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV- 209
Query: 558 RHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAIT 611
S RG + GR+E GIIK + VE G +K+T ++M K LD
Sbjct: 210 -----FSISGRGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRA 262
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G++V ++++ + +I RG +L P
Sbjct: 263 GENVGVLLRGIKREEIERGQVLAKP 287
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D E+ +GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 50 DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 109
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++
Sbjct: 110 -------GPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYD 161
Query: 500 FQNINTIPISALNGDNIISASNNMLWYNG-PTLISLLES-LNTNEKIDKKPLRFPVQLVA 557
F +T PI + G + + + W L L+S + E+ KP P++ V
Sbjct: 162 FPGDDT-PI--VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV- 217
Query: 558 RHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAIT 611
S RG + GR+E GIIK + VE G +K+T ++M K LD
Sbjct: 218 -----FSISGRGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRA 270
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G++V ++++ + +I RG +L P
Sbjct: 271 GENVGVLLRGIKREEIERGQVLAKP 295
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D E+ +GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 50 DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 109
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++
Sbjct: 110 -------GPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYD 161
Query: 500 FQNINTIPISALNGDNIISASNNMLWYNG-PTLISLLES-LNTNEKIDKKPLRFPVQLVA 557
F +T PI + G + + + W L L+S + E+ KP P++ V
Sbjct: 162 FPGDDT-PI--VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV- 217
Query: 558 RHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAIT 611
S RG + GR+E GIIK + VE G +K+T ++M K LD
Sbjct: 218 -----FSISGRGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRA 270
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G++V ++++ + +I RG +L P
Sbjct: 271 GENVGVLLRGIKREEIERGQVLAKP 295
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D E+ +GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 50 DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 109
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++
Sbjct: 110 -------GPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYD 161
Query: 500 FQNINTIPISALNGDNIISASNNMLWYNG-PTLISLLES-LNTNEKIDKKPLRFPVQLVA 557
F +T PI + G + + + W L L+S + E+ KP P++ V
Sbjct: 162 FPGDDT-PI--VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV- 217
Query: 558 RHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAIT 611
S RG + GR+E GIIK + VE G +K+T ++M K LD
Sbjct: 218 -----FSISGRGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRA 270
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G++V ++++ + +I RG +L P
Sbjct: 271 GENVGVLLRGIKREEIERGQVLAKP 295
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D E+ +GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 51 DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 110
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++
Sbjct: 111 -------GPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYD 162
Query: 500 FQNINTIPISALNGDNIISASNNMLWYNGP-TLISLLES-LNTNEKIDKKPLRFPVQLVA 557
F +T PI + G + + + W L L+S + E+ KP P++ V
Sbjct: 163 FPGDDT-PI--VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV- 218
Query: 558 RHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAIT 611
S RG + GR+E GIIK + VE G +K+T ++M K LD
Sbjct: 219 -----FSISGRGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRA 271
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G++V ++++ + +I RG +L P
Sbjct: 272 GENVGVLLRGIKREEIERGQVLAKP 296
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D E+ +GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 335 DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 394
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++
Sbjct: 395 -------GPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYD 446
Query: 500 FQNINTIPISALNGDNIISASNNMLWYNGP-TLISLLES-LNTNEKIDKKPLRFPVQLVA 557
F +T PI + G + + + W L L+S + E+ KP P++ V
Sbjct: 447 FPGDDT-PI--VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVF 503
Query: 558 RHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAIT 611
G RG + GR+E GIIK + VE G +K+T ++M K LD
Sbjct: 504 SISG------RGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRA 555
Query: 612 GQSVTLIIK--EYLDISRGNMLVSP 634
G++V ++++ + +I RG +L P
Sbjct: 556 GENVGVLLRGIKREEIERGQVLAKP 580
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 54/339 (15%)
Query: 311 APEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSG 370
A E K++ + + T G VD GK+TL + + + KY+ +
Sbjct: 1 AVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAI-----TKILAEGGGAKFKKYEEI--- 52
Query: 371 HNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADA 430
D ER +GITI+ A+ ++T R + D PGH Y +N ITG + D
Sbjct: 53 ---------DNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDG 103
Query: 431 VIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYA 490
I+++ A+ QT+ H ++A + ++H+++ VNK D + ++ + +
Sbjct: 104 CILVVAAND-------GPXPQTREHLLLARQIGVEHVVVYVNKADAVQDSEXV-ELVELE 155
Query: 491 YKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTL-----ISLLESLNTNEKID 545
++ + ++ T PI I+ ++ L P L LL++++T +
Sbjct: 156 IRELLTEFGYKGEET-PI-------IVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 207
Query: 546 ----KKPLRFPVQLVARHCGHISKDFRGYM--GRIESGIIKKND-CLIVEPSGK-KATIK 597
+KP PV+ V G RG + G +E GI+KK D C + S + +
Sbjct: 208 TRDLEKPFLLPVESVYSIPG------RGTVVTGTLERGILKKGDECEFLGHSKNIRTVVT 261
Query: 598 DIQMLNKSLDMAITGQSVTLIIK--EYLDISRGNMLVSP 634
I+ +KSLD A G ++ +++ + D+ RG + P
Sbjct: 262 GIEXFHKSLDRAEAGDNLGALVRGLKREDLRRGLVXAKP 300
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 126/257 (49%), Gaps = 29/257 (11%)
Query: 388 QGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVN 447
+GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 44 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-------G 96
Query: 448 LLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIP 507
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++ F +T P
Sbjct: 97 PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYDFPGDDT-P 154
Query: 508 ISALNGDNIISASNNMLWYNGP-TLISLLES-LNTNEKIDKKPLRFPVQLVARHCGHISK 565
I + G + + + W L L+S + E+ KP P++ V S
Sbjct: 155 I--VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV------FSI 206
Query: 566 DFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAITGQSVTLII 619
RG + GR+E GIIK + VE G +K+T ++M K LD G++V +++
Sbjct: 207 SGRGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLL 264
Query: 620 K--EYLDISRGNMLVSP 634
+ + +I RG +L P
Sbjct: 265 RGIKREEIERGQVLAKP 281
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 29/256 (11%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-------GP 53
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++ F +T PI
Sbjct: 54 MPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYDFPGDDT-PI 111
Query: 509 SALNGDNIISASNNMLWYNGP-TLISLLES-LNTNEKIDKKPLRFPVQLVARHCGHISKD 566
+ G + + + W L L+S + E+ KP P++ V G
Sbjct: 112 --VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISG----- 164
Query: 567 FRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAITGQSVTLIIK 620
RG + GR+E GIIK + VE G +K+T ++M K LD G++V ++++
Sbjct: 165 -RGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLR 221
Query: 621 --EYLDISRGNMLVSP 634
+ +I RG +L P
Sbjct: 222 GIKREEIERGQVLAKP 237
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 29/256 (11%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATD-------GP 53
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ QT+ H ++ + + +II+ +NK D+++ ++ + + ++ F +T PI
Sbjct: 54 MPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL-LELVEMEVRELLSQYDFPGDDT-PI 111
Query: 509 SALNGDNIISASNNMLWYNGP-TLISLLES-LNTNEKIDKKPLRFPVQLVARHCGHISKD 566
+ G + + + W L L+S + E+ KP P++ V G
Sbjct: 112 --VRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISG----- 164
Query: 567 FRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAITGQSVTLIIK 620
RG + GR+E GIIK + VE G +K+T ++M K LD G++V ++++
Sbjct: 165 -RGTVVTGRVERGIIKVGEE--VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLR 221
Query: 621 --EYLDISRGNMLVSP 634
+ +I RG +L P
Sbjct: 222 GIKREEIERGQVLAKP 237
>pdb|3NDC|A Chain A, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus
pdb|3NDC|B Chain B, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus
Length = 264
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 17/236 (7%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSI 797
V+ IGAGPGAADLIT+RG L+ V LY +L+ LL CP I +
Sbjct: 6 VHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIV--------NT 57
Query: 798 AQYIINRIIVKCAFKYNL---VVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAAL 854
A ++ II A + V RL GD ++ E+L L+ NI V PG+ +
Sbjct: 58 APMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFA 117
Query: 855 AAASESKQSLTKRNISRSVVLFTS----STMLKNNYLKNIPISDTLVEYMGGNNIFLTAK 910
AAA+ LT +++SV+L + S M L+N + ++ ++
Sbjct: 118 AAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENFARTGAVLAIHLSVHVLDEVV 177
Query: 911 KLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI-FQFEKPVLFMIGKSLKS 965
+ L + PV +V S +Q++ R L L+ + + E+ L ++G+SL +
Sbjct: 178 QKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSLGAELERTALILVGRSLAT 233
>pdb|3NEI|A Chain A, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus (No Sah Bound)
pdb|3NEI|B Chain B, Crystal Structure Of Precorrin-4 C11-Methyltransferase
From Rhodobacter Capsulatus (No Sah Bound)
Length = 281
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 17/236 (7%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSI 797
V+ IGAGPGAADLIT+RG L+ V LY +L+ LL CP I +
Sbjct: 23 VHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIV--------NT 74
Query: 798 AQYIINRIIVKCAFKYNL---VVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAAL 854
A ++ II A + V RL GD ++ E+L L+ NI V PG+ +
Sbjct: 75 APMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFA 134
Query: 855 AAASESKQSLTKRNISRSVVLFTS----STMLKNNYLKNIPISDTLVEYMGGNNIFLTAK 910
AAA+ LT +++SV+L + S M L+N + ++ ++
Sbjct: 135 AAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENFARTGAVLAIHLSVHVLDEVV 194
Query: 911 KLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI-FQFEKPVLFMIGKSLKS 965
+ L + PV +V S +Q++ R L L+ + + E+ L ++G+SL +
Sbjct: 195 QKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSLGAELERTALILVGRSLAT 250
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 150/328 (45%), Gaps = 64/328 (19%)
Query: 329 TAGSVDDGKSTLIGRLLF----DSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLES 384
T G VD GK+TL L + +++N+ + + + +
Sbjct: 16 TIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAR--------------------E 55
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
ER +GITI+ A+ + T KR + D GH Y +NMITGA+ D I+++ A+ +
Sbjct: 56 ERARGITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGR--- 112
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF------YKRIVYAYKKFAEDI 498
+ QT+ H ++A + +++I++ +NK+D+++ ++ + ++ Y+ +++
Sbjct: 113 ----MRQTREHILLARQVGVRYIVVFMNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEV 168
Query: 499 H-FQNINTIPISALNGDNIISASNN----MLWYNGPTLISLLESLNTNEK-IDKKPLRFP 552
+ + + ++ + N +W L ++ E + T + +DK+ L
Sbjct: 169 RVIRGSALLALEEMHKNRKTKRGENEWVDKIW---ELLDAIDEYIRTRVRDVDKRFL-MR 224
Query: 553 VQLVARHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG-----KKATIKDIQMLNKS 605
V+ V G RG + GRIE G +K D VE G +K + ++M K+
Sbjct: 225 VEDVFTITG------RGTVATGRIERGKVKVGDE--VEIVGLARETRKTVVTGVEMHRKT 276
Query: 606 LDMAITGQSVTLIIK--EYLDISRGNML 631
L I G +V L+++ ++ RG +L
Sbjct: 277 LQEGIAGDNVGLLLRGVSREEVERGQVL 304
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 127/299 (42%), Gaps = 34/299 (11%)
Query: 342 GRLLFDSKNIFIDQLDAV--SRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399
GR D KNI + + +T +V++ I + D L +++GITID+ + F
Sbjct: 11 GRPHMDFKNINLGIFGHIDHGKTTLSKVLT--EIASTSAHDKLPESQKRGITIDIGFSAF 68
Query: 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA 459
+ + D PGH R +++ A D +I++DA K P TQT H +I
Sbjct: 69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDA---KEGPK----TQTGEHMLIL 121
Query: 460 HLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH-FQNINTIPISALNGDNIIS 518
I II+ + K D +I KR K + H +N + IPISA G +
Sbjct: 122 DHFNIP-IIVVITKSDNAGTEEI--KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE 178
Query: 519 ASNNMLWYNGPTLISLLESLNTNEKIDKKPL--RFPVQLVARHCGHISKDFRGYMGRIES 576
N ++ T ++ E + E K PL FP+ + G + G I
Sbjct: 179 LKNLII-----TTLNNAEIIRNTESYFKMPLDHAFPI----KGAGTV------VTGTINK 223
Query: 577 GIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIK--EYLDISRGNMLVS 633
GI+K D L V P ++ IQ +S+ A G V + I+ + I RG +L S
Sbjct: 224 GIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTS 282
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 105/248 (42%), Gaps = 58/248 (23%)
Query: 376 SLLTDGLESEREQGITIDVAY------------RYFNTPK-----------RKFIIADTP 412
+ TD E +GITI + + RY +P R+ D P
Sbjct: 32 GVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP 91
Query: 413 GHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472
GHE M+ GAS D I++I A++ P QT+ H + ++ K+IIIA N
Sbjct: 92 GHEALMTTMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQKNIIIAQN 145
Query: 473 KMDLINYNQIF--YKRIVYAYKKFAEDIHFQNINTIPISALNGDNI---ISASNNMLWY- 526
K++L++ + Y++I K+F E +N IPISAL+G NI + A + +
Sbjct: 146 KIELVDKEKALENYRQI----KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201
Query: 527 ----NGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKN 582
N P + +L S + N KP P +LV G G I G +K
Sbjct: 202 KRDPNKPPKMLVLRSFDVN-----KPGTPPEKLVGGVLG----------GSIVQGKLKVG 246
Query: 583 DCLIVEPS 590
D + + P
Sbjct: 247 DEIEIRPG 254
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 35/166 (21%)
Query: 376 SLLTDGLESEREQGITIDVAY------------RYFNTPK-----------RKFIIADTP 412
+ TD E +GITI + + RY +P R+ D P
Sbjct: 32 GVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP 91
Query: 413 GHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472
GHE M+ GAS D I++I A++ P QT+ H + ++ K+IIIA N
Sbjct: 92 GHEALMTTMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQKNIIIAQN 145
Query: 473 KMDLINYNQIF--YKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
K++L++ + Y++I K+F E +N IPISAL+G NI
Sbjct: 146 KIELVDKEKALENYRQI----KEFIEGTVAENAPIIPISALHGANI 187
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 35/166 (21%)
Query: 376 SLLTDGLESEREQGITIDVAY------------RYFNTPK-----------RKFIIADTP 412
+ TD E +GITI + + RY +P R+ D+P
Sbjct: 33 GVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSP 92
Query: 413 GHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472
GHE M+ GAS D I++I A++ P QT+ H + ++ K+IIIA N
Sbjct: 93 GHEALMTTMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQKNIIIAQN 146
Query: 473 KMDLINYNQIF--YKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
K++L++ + Y++I K+F + +N IPISAL+G NI
Sbjct: 147 KIELVDKEKALENYRQI----KEFIKGTVAENAPIIPISALHGANI 188
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 126/313 (40%), Gaps = 75/313 (23%)
Query: 376 SLLTDGLESEREQGITIDVAY------------RYFNTPK-----------RKFIIADTP 412
+ TD E +GITI + + RY +P R+ D P
Sbjct: 32 GVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP 91
Query: 413 GHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472
GHE + GAS D I++I A++ P QT+ H ++ K+IIIA N
Sbjct: 92 GHEALXTTXLAGASLXDGAILVIAANEPCPRP------QTREHLXALQIIGQKNIIIAQN 145
Query: 473 KMDLINYNQIF--YKRIVYAYKKFAEDIHFQNINTIPISALNGDNI---ISASNNMLWY- 526
K++L++ + Y++I K+F E +N IPISAL+G NI + A + +
Sbjct: 146 KIELVDKEKALENYRQI----KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201
Query: 527 ----NGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKN 582
N P +L S + N KP P +LV G G I G +K
Sbjct: 202 KRDPNKPPKXLVLRSFDVN-----KPGTPPEKLVGGVLG----------GSIVQGKLKVG 246
Query: 583 DCLIVEPS------GK------KATIKDIQMLNKSLDMAITGQSVTLIIK--EYL---DI 625
D + + P G+ I +Q + ++ A G V + K YL D+
Sbjct: 247 DEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDL 306
Query: 626 SRGNMLVSPFKRP 638
GN++ P K P
Sbjct: 307 XAGNVVGKPGKLP 319
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR 463
R+ D+PGHE M++GAS D I++I A++ P QTK H + +L
Sbjct: 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQP------QTKEHLMALEILG 134
Query: 464 IKHIIIAVNKMDLINYNQIF--YKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
I III NK+DL++ Q Y++I K+F + +N IPISA + NI
Sbjct: 135 IDKIIIVQNKIDLVDEKQAEENYEQI----KEFVKGTIAENAPIIPISAHHEANI 185
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR 463
R+ D PGHE M++GA+ D I+++ A++ P QT+ H + ++
Sbjct: 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP------QTREHFVALGIIG 128
Query: 464 IKHIIIAVNKMDLINYNQIF--YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518
+K++II NK+D+++ + Y++I K+F + +N+ IP+SAL+ NI S
Sbjct: 129 VKNLIIVQNKVDVVSKEEALSQYRQI----KQFTKGTWAENVPIIPVSALHKINIDS 181
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR 463
R+ D PGHE M++GA+ D I+++ A++ P QT+ H + ++
Sbjct: 81 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP------QTREHFVALGIIG 134
Query: 464 IKHIIIAVNKMDLINYNQIF--YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518
+K++II NK+D+++ + Y++I K+F + +N+ IP+SAL+ NI S
Sbjct: 135 VKNLIIVQNKVDVVSKEEALSQYRQI----KQFTKGTWAENVPIIPVSALHKINIDS 187
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR 463
R+ D PGHE M++GA+ D I+++ A++ P QT+ H + ++
Sbjct: 87 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP------QTREHFVALGIIG 140
Query: 464 IKHIIIAVNKMDLINYNQIF--YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518
+K++II NK+D+++ + Y++I K+F + +N+ IP+SAL+ NI S
Sbjct: 141 VKNLIIVQNKVDVVSKEEALSQYRQI----KQFTKGTWAENVPIIPVSALHKINIDS 193
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR 463
R+ D PGHE M++GA+ D I+++ A++ P QT+ H + ++
Sbjct: 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP------QTREHFVALGIIG 139
Query: 464 IKHIIIAVNKMDLINYNQIF--YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518
+K++II NK+D+++ + Y++I K+F + +N+ IP+SAL+ NI S
Sbjct: 140 VKNLIIVQNKVDVVSKEEALSQYRQI----KQFTKGTWAENVPIIPVSALHKINIDS 192
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 333 VDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITI 392
VD GK+TL LL++S I +L +V + + TD ER++GITI
Sbjct: 11 VDAGKTTLTESLLYNSGAI--TELGSVDKGTTR-------------TDNTLLERQRGITI 55
Query: 393 DVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT 452
F K I DTPGH + + S D I+LI A + QT
Sbjct: 56 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD-------GVQAQT 108
Query: 453 KRHSIIAHLLRIKHI--IIAVNKMD 475
+ I+ H LR I I +NK+D
Sbjct: 109 R---ILFHALRKMGIPTIFFINKID 130
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 43/189 (22%)
Query: 331 GSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGI 390
G VD GK+TL LD + +T+ + +G GI
Sbjct: 11 GHVDHGKTTL---------------LDKLRKTQVAAMEAG------------------GI 37
Query: 391 TIDVAYRYFNTPK-RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
T + + P K DTPGH ++ G D VI+++ A +V +
Sbjct: 38 TQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI 97
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPIS 509
+H+ AH+ I++A+NK D + K+ + AY ED + ++ + +S
Sbjct: 98 ----QHAKDAHVP----IVLAINKCDKAEADPEKVKKELLAYDVVCED-YGGDVQAVHVS 148
Query: 510 ALNGDNIIS 518
AL G+N+++
Sbjct: 149 ALTGENMMA 157
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 334 DDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITID 393
D GK+TL +LL +F + K ++ +D + ERE+GI++
Sbjct: 41 DAGKTTLTEKLL-----LFGGAIQMAGSVKARKAAR------HATSDWMAMERERGISVT 89
Query: 394 VAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK 453
+ F R + DTPGH+ ++ + + D+ +++IDA+K + QT+
Sbjct: 90 TSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-------GVEAQTR 142
Query: 454 RHSIIAHLLRIKHIIIAVNKMD 475
+ + +R ++ VNKMD
Sbjct: 143 KLMDVCR-MRATPVMTFVNKMD 163
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 33/156 (21%)
Query: 327 FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESER 386
F VD GKSTL RLL +Y +S LL D L+ ER
Sbjct: 9 FCIIAHVDHGKSTLADRLL-----------------EYTGAISEREKREQLL-DTLDVER 50
Query: 387 EQGITIDV-AYRYFNTPKR----KFIIADTPGHEQYTRNMITGASTADAVIILIDASK-I 440
E+GIT+ + A R F K K + DTPGH ++ + + + ++LIDAS+ I
Sbjct: 51 ERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Query: 441 KFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476
+ N ++ + II +NK+DL
Sbjct: 111 EAQTVANFWKAVEQDLV---------IIPVINKIDL 137
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 33/156 (21%)
Query: 327 FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESER 386
F VD GKSTL RLL +Y +S LL D L+ ER
Sbjct: 9 FCIIAHVDHGKSTLADRLL-----------------EYTGAISEREKREQLL-DTLDVER 50
Query: 387 EQGITIDV-AYRYFNTPKR----KFIIADTPGHEQYTRNMITGASTADAVIILIDASK-I 440
E+GIT+ A R F K K + DTPGH ++ + + + ++LIDAS+ I
Sbjct: 51 ERGITVKXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Query: 441 KFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476
+ N ++ + II +NK+DL
Sbjct: 111 EAQTVANFWKAVEQDLV---------IIPVINKIDL 137
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 54/145 (37%), Gaps = 41/145 (28%)
Query: 331 GSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGI 390
G VD GK+TL LDA+ +K +G GI
Sbjct: 15 GHVDHGKTTL---------------LDAIRHSKVTEQEAG------------------GI 41
Query: 391 TIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLT 450
T + +K DTPGHE +T GA D VI+++ A +V +
Sbjct: 42 TQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAIN 101
Query: 451 QTKRHSIIAHLLRIKHIIIAVNKMD 475
K ++ II+A+NKMD
Sbjct: 102 HAKAANV--------PIIVAINKMD 118
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 23/152 (15%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
L + A +D GK+T R+L+ + I K V G + D +E
Sbjct: 12 LRNIVIAAHIDAGKTTTTERILYYTGRIH----------KIGEVHEG-----AATMDFME 56
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
ERE+GITI A + I DTPGH +T + D I++ D+S+
Sbjct: 57 QERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 116
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475
S + Q +++ ++ I A NKMD
Sbjct: 117 QSETVWRQAEKY-------KVPRIAFA-NKMD 140
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 23/146 (15%)
Query: 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG 389
A +D GK+T R+L+ + I K V G + D +E ERE+G
Sbjct: 18 AAHIDAGKTTTTERILYYTGRIH----------KIGEVHEG-----AATMDFMEQERERG 62
Query: 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
ITI A + I DTPGH +T + D I++ D+S+ S +
Sbjct: 63 ITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMD 475
Q +++ ++ I A NKMD
Sbjct: 123 RQAEKY-------KVPRIAFA-NKMD 140
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 23/146 (15%)
Query: 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG 389
A +D GK+T R+L+ + I K V G + D +E ERE+G
Sbjct: 18 AAHIDAGKTTTTERILYYTGRIH----------KIGEVHEG-----AATMDFMEQERERG 62
Query: 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
ITI A + I DTPGH +T + D I++ D+S+ S +
Sbjct: 63 ITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMD 475
Q +++ ++ I A NKMD
Sbjct: 123 RQAEKY-------KVPRIAFA-NKMD 140
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 23/146 (15%)
Query: 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG 389
A +D GK+T R+L+ + I K V G + D +E ERE+G
Sbjct: 18 AAHIDAGKTTTTERILYYTGRIH----------KIGEVHEG-----AATMDFMEQERERG 62
Query: 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
ITI A + I DTPGH +T + D I++ D+S+ S +
Sbjct: 63 ITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMD 475
Q +++ ++ I A NKMD
Sbjct: 123 RQAEKY-------KVPRIAFA-NKMD 140
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 23/146 (15%)
Query: 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG 389
A +D GK+T R+L+ + I K V G + D +E ERE+G
Sbjct: 18 AAHIDAGKTTTTERILYYTGRIH----------KIGEVHEG-----AATMDFMEQERERG 62
Query: 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
ITI A + I DTPGH +T + D I++ D+S+ S +
Sbjct: 63 ITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMD 475
Q +++ ++ I A NKMD
Sbjct: 123 RQAEKY-------KVPRIAFA-NKMD 140
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 316 QSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDL 375
Q V K+ + F D GK+T+ ++L + I + + G +
Sbjct: 8 QEVAKRRT---FAIISHPDAGKTTITEKVLLFGQAI-----------QTAGTVKGRGSNQ 53
Query: 376 SLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILI 435
+D +E E+++GI+I + F + DTPGHE ++ + + D +++I
Sbjct: 54 HAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVI 113
Query: 436 DASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475
DA+K + + L+ T+ LR I+ +NK+D
Sbjct: 114 DAAKGVEDRTRKLMEVTR--------LRDTPILTFMNKLD 145
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 316 QSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDL 375
Q V K+ + F D GK+T+ ++L + I + + G +
Sbjct: 8 QEVAKRRT---FAIISHPDAGKTTITEKVLLFGQAI-----------QTAGTVKGRGSNQ 53
Query: 376 SLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILI 435
+D +E E+++GI+I + F + DTPGHE ++ + + D +++I
Sbjct: 54 HAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVI 113
Query: 436 DASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475
DA+K + + L+ T+ LR I+ +NK+D
Sbjct: 114 DAAKGVEDRTRKLMEVTR--------LRDTPILTFMNKLD 145
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG 389
A +D GK+T R+L+ + I K V G + D +E ERE+G
Sbjct: 18 AAHIDAGKTTTTERILYYTGRIH----------KIAEVHEG-----AATMDFMEQERERG 62
Query: 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
ITI A + I D PGH +T + D I++ D+S+ S +
Sbjct: 63 ITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMD 475
Q +++ ++ I A NKMD
Sbjct: 123 RQAEKY-------KVPRIAFA-NKMD 140
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG 389
A +D GK+T R+L+ + I K V G + D +E ERE+G
Sbjct: 18 AAHIDAGKTTTTERILYYTGRIH----------KIGEVHEG-----AATMDFMEQERERG 62
Query: 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
ITI A + I D PGH +T + D I++ D+S+ S +
Sbjct: 63 ITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMD 475
Q +++ ++ I A NKMD
Sbjct: 123 RQAEKY-------KVPRIAFA-NKMD 140
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG 389
A +D GK+T R+L+ + I K V G + D +E ERE+G
Sbjct: 18 AAHIDAGKTTTTERILYYTGRIH----------KIGEVHEG-----AATMDFMEQERERG 62
Query: 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
ITI A + I D PGH +T + D I++ D+S+ S +
Sbjct: 63 ITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMD 475
Q +++ ++ I A NKMD
Sbjct: 123 RQAEKY-------KVPRIAFA-NKMD 140
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 317 SVFKKHSLLR-FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDL 375
SV K+ + R F D GK+TL +LL I QL ++ R + H
Sbjct: 5 SVEKQTAXRRTFAIISHPDAGKTTLTEKLLLFGGAI---QLAGTIKS---RKAARHAT-- 56
Query: 376 SLLTDGLESEREQGITIDVAYRYFNTPKRKFII--ADTPGHEQYTRNMITGASTADAVII 433
+D E E+++GI++ + F P + ++I DTPGH +T + + D+ +
Sbjct: 57 ---SDWXELEKQRGISVTTSVXQF--PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALX 111
Query: 434 LIDASK 439
+IDA+K
Sbjct: 112 VIDAAK 117
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 39/138 (28%)
Query: 410 DTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIII 469
DTPGHE +T G + AD I+++D ++ F P QT+ I + R ++
Sbjct: 76 DTPGHEAFTTLRKRGGALADLAILIVDINE-GFKP------QTQEALNILRMYRTP-FVV 127
Query: 470 AVNKMDLIN---------YNQIFYKRIVYAYKKFAEDIH----------FQN-------- 502
A NK+D I+ + + F K+ + +K ++ F++
Sbjct: 128 AANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTD 187
Query: 503 ----INTIPISALNGDNI 516
++ IPISA+ G+ I
Sbjct: 188 FASQVSIIPISAITGEGI 205
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 39/154 (25%)
Query: 389 GITIDVAYRYFNT--PKR--------KFIIADTPGHEQYTRNM-----------ITGAST 427
G+T V + F T PKR K ++ DT G + R + ++ A
Sbjct: 201 GLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVG---FIRGIPPQIVDAFFVTLSEAKY 257
Query: 428 ADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-----KHIIIAVNKMDLINYNQI 482
+DA+I++ID++ S NLL +T + S +LR K I++ +NK+D IN +
Sbjct: 258 SDALILVIDST-----FSENLLIETLQSSF--EILREIGVSGKPILVTLNKIDKINGD-- 308
Query: 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
YK++ +K +++++ + IPISAL N+
Sbjct: 309 LYKKLDLV-EKLSKELYSPIFDVIPISALKRTNL 341
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 39/138 (28%)
Query: 410 DTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIII 469
DTPGHE +T G + AD I+++D ++ F P QT+ I R ++
Sbjct: 76 DTPGHEAFTTLRKRGGALADLAILIVDINE-GFKP------QTQEALNILRXYRTP-FVV 127
Query: 470 AVNKMDLIN---------YNQIFYKRIVYAYKKFAEDIH----------FQN-------- 502
A NK+D I+ + + F K+ + +K ++ F++
Sbjct: 128 AANKIDRIHGWRVHEGRPFXETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTD 187
Query: 503 ----INTIPISALNGDNI 516
++ IPISA+ G+ I
Sbjct: 188 FASQVSIIPISAITGEGI 205
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 422 ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-----KHIIIAVNKMDL 476
++ A +DA+I++ID++ S NLL +T + S +LR K I++ +NK+D
Sbjct: 252 LSEAKYSDALILVIDSTF-----SENLLIETLQSSF--EILREIGVSGKPILVTLNKIDK 304
Query: 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
IN + YK++ +K +++++ + IPISAL N+
Sbjct: 305 INGD--LYKKLDLV-EKLSKELYSPIFDVIPISALKRTNL 341
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 422 ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-----KHIIIAVNKMDL 476
++ A +DA+I++ID++ S NLL +T + S +LR K I++ +NK+D
Sbjct: 252 LSEAKYSDALILVIDST-----FSENLLIETLQSSF--EILREIGVSGKPILVTLNKIDK 304
Query: 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
IN + YK++ +K +++++ + IPISAL N+
Sbjct: 305 INGD--LYKKLDLV-EKLSKELYSPIFDVIPISALKRTNL 341
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGH----------EQYT-RNMITGASTADAVIILIDA 437
G T D F +++F+I DT G E+Y+ + ++ V +++D
Sbjct: 208 GTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDG 267
Query: 438 SKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAED 497
+ ++ Q KR + AH K ++I VNK D ++ ++ K+F E+
Sbjct: 268 EE-------GIIEQDKRIAGYAHEAG-KAVVIVVNKWDAVDKDE-------STXKEFEEN 312
Query: 498 I--HFQNINTIPI 508
I HFQ ++ PI
Sbjct: 313 IRDHFQFLDYAPI 325
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGH----------EQYT-RNMITGASTADAVIILIDA 437
G T D F +++F+I DT G E+Y+ + ++ V +++D
Sbjct: 228 GTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDG 287
Query: 438 SKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAED 497
+ ++ Q KR + AH K ++I VNK D ++ ++ K+F E+
Sbjct: 288 EE-------GIIEQDKRIAGYAHEAG-KAVVIVVNKWDAVDKDE-------STMKEFEEN 332
Query: 498 I--HFQNINTIPI 508
I HFQ ++ PI
Sbjct: 333 IRDHFQFLDYAPI 345
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 380 DGLESEREQGITIDVA-----YRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIIL 434
D ++ ERE+GITI Y+ + + DTPGH ++ + + + +++
Sbjct: 42 DSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLV 101
Query: 435 IDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476
+DA + + QT + A + ++ ++ +NK+DL
Sbjct: 102 VDAGQ-------GVEAQTLANCYTAMEMDLE-VVPVLNKIDL 135
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 380 DGLESEREQGITIDVA-----YRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIIL 434
D ++ ERE+GITI Y+ + + DTPGH ++ + + + +++
Sbjct: 42 DSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLV 101
Query: 435 IDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476
+DA + + QT + A + ++ ++ +NK+DL
Sbjct: 102 VDAGQ-------GVEAQTLANCYTAMEMDLE-VVPVLNKIDL 135
>pdb|2ZVB|A Chain A, Crystal Structure Of Tt0207 From Thermus Thermophilus Hb8
pdb|2ZVC|A Chain A, Form 2 Structure (C2221) Of Tt0207 From Thermus
Thermophilus Hb8
Length = 295
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 26/141 (18%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVL-YDALITNELLMLCPKAKHIFVGKRFKKHSI 797
++++G GPG +T R L A+VV+ Y + M K + ++
Sbjct: 4 LFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYVKLLEEMGLLAGKEVVRKGMTEELDR 63
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIK-------------- 843
A+ + R A V + GGDP ++G L +++ +K
Sbjct: 64 AEEALER-----ALSGQRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAG 118
Query: 844 ------VKVIPGITAALAAAS 858
+ VIPG+TAA A AS
Sbjct: 119 EEGEVFLAVIPGVTAANAVAS 139
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDA 437
GIT + + T DTPGH +T GA D V++++ A
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAA 84
>pdb|2K4K|A Chain A, Solution Structure Of Gsp13 From Bacillus Subtilis
Length = 130
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 274 VEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKKHSLLRFITAGSV 333
V+DI + +SV + +D++ + S+ R APEKK+S +K + S
Sbjct: 45 VKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAAPEKKESKPRKPKAAQVSEEAST 104
Query: 334 DDGKSTLIGRL 344
G +TL +L
Sbjct: 105 PQGFNTLKDKL 115
>pdb|3MDA|A Chain A, Dna Polymerase Lambda In Complex With Arac
pdb|3MDC|A Chain A, Dna Polymerase Lambda In Complex With Dfdctp
Length = 325
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 273 TVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKK----HSLLRFI 328
++EDI + S+T G D +E+ + EA E +Q+V K +S L +
Sbjct: 109 SLEDIRSQASLTTQQAIGLKHYSD-----FLERMPREEATEIEQTVQKAAQAFNSGLLCV 163
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
GS GK+T ++ I D S H S L D L R++
Sbjct: 164 ACGSYRRGKATC------GDVDVLITHPDGRS----------HRGIFSRLLDSL---RQE 204
Query: 389 G-ITIDVAYRYFNTPKRKFIIA---DTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
G +T D+ + N ++K++ PG ++I + A +L FN
Sbjct: 205 GFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNR 264
Query: 445 SVNLLTQTKRHSIIAHLL 462
S+ L +TK S+ H L
Sbjct: 265 SMRALAKTKGMSLSEHAL 282
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 26/134 (19%)
Query: 405 KFIIADTPGHEQYTRNMITGAST----------ADAVIILIDASKIKFNPSVNLLTQTKR 454
+ I DTPG + ++ + G S AD ++ +IDA++ + P +
Sbjct: 59 QIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE-GWRP--------RD 109
Query: 455 HSIIAHLLRI--KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALN 512
I + ++ K +I+ +NK+D I + I +KK H + +PISAL
Sbjct: 110 EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK-----HPELTEIVPISALK 164
Query: 513 GDNIISASNNMLWY 526
G N+ +L Y
Sbjct: 165 GANLDELVKTILKY 178
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 26/134 (19%)
Query: 405 KFIIADTPGHEQYTRNMITGAST----------ADAVIILIDASKIKFNPSVNLLTQTKR 454
+ I DTPG + ++ + G S AD ++ +IDA++ + P +
Sbjct: 60 QIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE-GWRP--------RD 110
Query: 455 HSIIAHLLRI--KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALN 512
I + ++ K +I+ +NK+D I + I +KK H + +PISAL
Sbjct: 111 EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK-----HPELTEIVPISALK 165
Query: 513 GDNIISASNNMLWY 526
G N+ +L Y
Sbjct: 166 GANLDELVKTILKY 179
>pdb|3HX0|A Chain A, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
pdb|3HX0|F Chain F, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
pdb|3HX0|K Chain K, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
pdb|3HX0|P Chain P, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
Length = 335
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 273 TVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKK----HSLLRFI 328
++EDI + S+T G D +E+ + EA E +Q+V K +S L +
Sbjct: 119 SLEDIRSQASLTTQQAIGLKHYSD-----FLERMPREEATEIEQTVQKAAQAFNSGLLCV 173
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
GS GK+T ++ I D S H S L D L R++
Sbjct: 174 ACGSYRRGKATC------GDVDVLITHPDGRS----------HRGIFSRLLDSL---RQE 214
Query: 389 G-ITIDVAYRYFNTPKRKFIIA---DTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
G +T D+ + N ++K++ PG ++I + A +L FN
Sbjct: 215 GFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAAFNA 274
Query: 445 SVNLLTQTKRHSIIAHLL 462
S+ L +TK S+ H L
Sbjct: 275 SMRALAKTKGMSLSEHAL 292
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 41/159 (25%)
Query: 333 VDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITI 392
VD GKSTL L+ + ++S + TD + E+E+GITI
Sbjct: 28 VDHGKSTLTDSLV-----------------QRAGIISAAKAGEARFTDTRKDEQERGITI 70
Query: 393 --------------DVAYRYFNTPKRKFII--ADTPGHEQYTRNMITGASTADAVIILID 436
DV T F+I D+PGH ++ + D ++++D
Sbjct: 71 KSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 130
Query: 437 ASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475
+ V + T+T + RIK +++ +NK+D
Sbjct: 131 TIE-----GVCVQTETVLRQALGE--RIKPVVV-INKVD 161
>pdb|3C5G|A Chain A, Structure Of A Ternary Complex Of The R517k Pol Lambda
Mutant
pdb|3C5G|B Chain B, Structure Of A Ternary Complex Of The R517k Pol Lambda
Mutant
Length = 335
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 273 TVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKK----HSLLRFI 328
++EDI + S+T G D +E+ + EA E +Q+V K +S L +
Sbjct: 119 SLEDIRSQASLTTQQAIGLKHYSD-----FLERMPREEATEIEQTVQKAAQAFNSGLLCV 173
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
GS GK+T ++ I D S H S L D L R++
Sbjct: 174 ACGSYRRGKATC------GDVDVLITHPDGRS----------HRGIFSRLLDSL---RQE 214
Query: 389 G-ITIDVAYRYFNTPKRKFIIA---DTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
G +T D+ + N ++K++ PG ++I + A +L FN
Sbjct: 215 GFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNR 274
Query: 445 SVNLLTQTKRHSIIAHLL 462
S+ L +TK S+ H L
Sbjct: 275 SMKALAKTKGMSLSEHAL 292
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 41/159 (25%)
Query: 333 VDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITI 392
VD GKSTL L+ + ++S + TD + E+E+GITI
Sbjct: 28 VDHGKSTLTDSLV-----------------QRAGIISAAKAGEARFTDTRKDEQERGITI 70
Query: 393 --------------DVAYRYFNTPKRKFII--ADTPGHEQYTRNMITGASTADAVIILID 436
DV T F+I D+PGH ++ + D ++++D
Sbjct: 71 KSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 130
Query: 437 ASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475
+ V + T+T + RIK +++ +NK+D
Sbjct: 131 TIE-----GVCVQTETVLRQALGE--RIKPVVV-INKVD 161
>pdb|1XSL|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
pdb|1XSL|E Chain E, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
pdb|1XSL|I Chain I, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
pdb|1XSL|M Chain M, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
pdb|2BCQ|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Dtmp
pdb|2BCR|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Damp
pdb|2BCS|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Dcmp
pdb|2BCU|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Damp And A T:t Mismatch
pdb|2BCV|A Chain A, Dna Polymerase Lambda In Complex With Dttp And A Dna
Duplex Containing An Unpaired Dtmp
pdb|2GWS|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
pdb|2GWS|E Chain E, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
pdb|2GWS|I Chain I, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
pdb|2GWS|M Chain M, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
Length = 335
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 273 TVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKK----HSLLRFI 328
++EDI + S+T G D +E+ + EA E +Q+V K +S L +
Sbjct: 119 SLEDIRSQASLTTQQAIGLKHYSD-----FLERMPREEATEIEQTVQKAAQAFNSGLLCV 173
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
GS GK+T ++ I D S H S L D L R++
Sbjct: 174 ACGSYRRGKATC------GDVDVLITHPDGRS----------HRGIFSRLLDSL---RQE 214
Query: 389 G-ITIDVAYRYFNTPKRKFIIA---DTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
G +T D+ + N ++K++ PG ++I + A +L FN
Sbjct: 215 GFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNR 274
Query: 445 SVNLLTQTKRHSIIAHLL 462
S+ L +TK S+ H L
Sbjct: 275 SMRALAKTKGMSLSEHAL 292
>pdb|1RZT|A Chain A, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
pdb|1RZT|E Chain E, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
pdb|1RZT|I Chain I, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
pdb|1RZT|M Chain M, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
Length = 331
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 273 TVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKK----HSLLRFI 328
++EDI + S+T G D +E+ + EA E +Q+V K +S L +
Sbjct: 115 SLEDIRSQASLTTQQAIGLKHYSD-----FLERMPREEATEIEQTVQKAAQAFNSGLLCV 169
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
GS GK+T ++ I D S H S L D L R++
Sbjct: 170 ACGSYRRGKATC------GDVDVLITHPDGRS----------HRGIFSRLLDSL---RQE 210
Query: 389 G-ITIDVAYRYFNTPKRKFIIA---DTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
G +T D+ + N ++K++ PG ++I + A +L FN
Sbjct: 211 GFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNR 270
Query: 445 SVNLLTQTKRHSIIAHLL 462
S+ L +TK S+ H L
Sbjct: 271 SMRALAKTKGMSLSEHAL 288
>pdb|2E0K|A Chain A, Crystal Structure Of Cbil, A Methyltransferase Involved In
Anaerobic Vitamin B12 Biosynthesis
pdb|2E0K|B Chain B, Crystal Structure Of Cbil, A Methyltransferase Involved In
Anaerobic Vitamin B12 Biosynthesis
pdb|2E0N|A Chain A, Crystal Structure Of Cbil In Complex With
S-Adenosylhomocysteine, A Methyltransferase Involved In
Anaerobic Vitamin B12 Biosynthesis
pdb|2E0N|B Chain B, Crystal Structure Of Cbil In Complex With
S-Adenosylhomocysteine, A Methyltransferase Involved In
Anaerobic Vitamin B12 Biosynthesis
Length = 259
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALIT 773
++ + GPG LITV+ LR+ADV+ Y ++
Sbjct: 5 GSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVS 41
>pdb|1XSN|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap And Ddttp
pdb|1XSP|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With Nicked Dna And Pyrophosphate
pdb|2PFN|A Chain A, Na In The Active Site Of Dna Polymerase Lambda
pdb|2PFO|A Chain A, Dna Polymerase Lambda In Complex With Dna And Dupnpp
pdb|2PFP|A Chain A, Dna Polymerase Lambda In Complex With Dna And Dctp
pdb|2PFQ|A Chain A, Manganese Promotes Catalysis In A Dna Polymerase
Lambda-Dna Crystal
pdb|3HW8|A Chain A, Ternary Complex Of Dna Polymerase Lambda Of A Two
Nucleotide Gapped Dna Substrate With A C In The Scrunch
Site
pdb|3HWT|A Chain A, Ternary Complex Of Dna Polymerase Lambda Bound To A Two
Nucleotide Gapped Dna Substrate With A Scrunched Da
Length = 335
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 273 TVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKK----HSLLRFI 328
++EDI + S+T G D +E+ + EA E +Q+V K +S L +
Sbjct: 119 SLEDIRSQASLTTQQAIGLKHYSD-----FLERMPREEATEIEQTVQKAAQAFNSGLLCV 173
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
GS GK+T ++ I D S H S L D L R++
Sbjct: 174 ACGSYRRGKATC------GDVDVLITHPDGRS----------HRGIFSRLLDSL---RQE 214
Query: 389 G-ITIDVAYRYFNTPKRKFIIA---DTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
G +T D+ + N ++K++ PG ++I + A +L FN
Sbjct: 215 GFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNR 274
Query: 445 SVNLLTQTKRHSIIAHLL 462
S+ L +TK S+ H L
Sbjct: 275 SMRALAKTKGMSLSEHAL 292
>pdb|3C5F|A Chain A, Structure Of A Binary Complex Of The R517a Pol Lambda
Mutant
pdb|3C5F|B Chain B, Structure Of A Binary Complex Of The R517a Pol Lambda
Mutant
Length = 335
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 273 TVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKK----HSLLRFI 328
++EDI + S+T G D +E+ + EA E +Q+V K +S L +
Sbjct: 119 SLEDIRSQASLTTQQAIGLKHYSD-----FLERMPREEATEIEQTVQKAAQAFNSGLLCV 173
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
GS GK+T ++ I D S H S L D L R++
Sbjct: 174 ACGSYRRGKATC------GDVDVLITHPDGRS----------HRGIFSRLLDSL---RQE 214
Query: 389 G-ITIDVAYRYFNTPKRKFIIA---DTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
G +T D+ + N ++K++ PG ++I + A +L FN
Sbjct: 215 GFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNR 274
Query: 445 SVNLLTQTKRHSIIAHLL 462
S+ L +TK S+ H L
Sbjct: 275 SMAALAKTKGMSLSEHAL 292
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 37/170 (21%)
Query: 333 VDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMS--GHNIDLSLLTDGLESEREQGI 390
VD GK+T R+LF Y V G D + TD + E+E+GI
Sbjct: 22 VDAGKTTTTERVLF-----------------YTGVNHKLGEVHDGAATTDWMVQEQERGI 64
Query: 391 TIDVAY--RYFNTPKRKFI-----IADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
TI A ++ + ++ + DTPGH +T + D +++ +
Sbjct: 65 TITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP 124
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKK 493
S + Q ++ + I+ VNKMD N + R+V KK
Sbjct: 125 QSETVWRQANKYGVPR--------IVYVNKMDRQGAN---FLRVVEQIKK 163
>pdb|3NUT|A Chain A, Crystal Structure Of The Methyltransferase Cobj
pdb|3NUT|B Chain B, Crystal Structure Of The Methyltransferase Cobj
pdb|3NUT|C Chain C, Crystal Structure Of The Methyltransferase Cobj
pdb|3NUT|D Chain D, Crystal Structure Of The Methyltransferase Cobj
Length = 251
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 739 VYIIGAGPGAADLITVR-GARLLRKADVVLYDALITN----ELLMLCPKAKHIFVGKRFK 793
V + G GPG DL+T A L D+V Y + E L L P + + +
Sbjct: 11 VTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARIAPREGLTLHPTDNRVELDR--A 68
Query: 794 KHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKY----NIKVKVIPG 849
H++ + A + VV + GDP +F AL+ + +++++PG
Sbjct: 69 THAL----------EMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPG 118
Query: 850 ITA 852
ITA
Sbjct: 119 ITA 121
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 30/151 (19%)
Query: 349 KNIFID-QLDAVSRTKYKRVM--SGHNIDLSLLTDG------LESEREQGITI------- 392
+NI I +DA T +R++ +G N + + DG +E E+E+GITI
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 69
Query: 393 ---DVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
+A +Y P R II DTPGH +T + D +++ A S +
Sbjct: 70 FWSGMAKQY--EPHRINII-DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 126
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480
Q ++ + I VNKMD + N
Sbjct: 127 RQANKYKVPR--------IAFVNKMDRMGAN 149
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 30/151 (19%)
Query: 349 KNIFID-QLDAVSRTKYKRVM--SGHNIDLSLLTDG------LESEREQGITI------- 392
+NI I +DA T +R++ +G N + + DG +E E+E+GITI
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 393 ---DVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
+A +Y P R II DTPGH +T + D +++ A S +
Sbjct: 71 FWSGMAKQY--EPHRINII-DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127
Query: 450 TQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480
Q ++ + I VNKMD + N
Sbjct: 128 RQANKYKVPR--------IAFVNKMDRMGAN 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,439,983
Number of Sequences: 62578
Number of extensions: 1055553
Number of successful extensions: 2921
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2707
Number of HSP's gapped (non-prelim): 122
length of query: 967
length of database: 14,973,337
effective HSP length: 108
effective length of query: 859
effective length of database: 8,214,913
effective search space: 7056610267
effective search space used: 7056610267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)