Query psy3751
Match_columns 967
No_of_seqs 721 out of 6801
Neff 9.1
Searched_HMMs 46136
Date Sat Aug 17 00:34:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 1.1E-83 2.4E-88 676.2 41.9 417 320-744 3-426 (428)
2 COG2895 CysN GTPases - Sulfate 100.0 3.5E-80 7.5E-85 629.0 37.3 413 320-743 2-414 (431)
3 PLN00043 elongation factor 1-a 100.0 4.4E-72 9.6E-77 634.4 46.0 418 321-746 4-431 (447)
4 PTZ00141 elongation factor 1- 100.0 1E-70 2.2E-75 624.2 46.6 418 320-745 3-430 (446)
5 PRK05124 cysN sulfate adenylyl 100.0 1.3E-69 2.7E-74 619.9 44.9 414 320-744 23-437 (474)
6 TIGR02034 CysN sulfate adenyly 100.0 4.2E-69 9.2E-74 608.0 44.3 406 325-741 1-406 (406)
7 PRK12317 elongation factor 1-a 100.0 3.2E-67 6.9E-72 600.9 45.2 413 321-746 3-422 (425)
8 TIGR00483 EF-1_alpha translati 100.0 1E-66 2.2E-71 596.2 46.1 415 320-746 3-424 (426)
9 KOG0458|consensus 100.0 7.8E-67 1.7E-71 567.0 34.5 418 320-745 173-602 (603)
10 PRK05506 bifunctional sulfate 100.0 1.1E-65 2.5E-70 613.3 46.0 416 320-746 20-435 (632)
11 KOG0459|consensus 100.0 4.5E-63 9.7E-68 511.0 28.6 414 320-744 75-499 (501)
12 PLN03126 Elongation factor Tu; 100.0 4.5E-58 9.8E-63 520.9 40.0 382 319-744 76-476 (478)
13 CHL00071 tufA elongation facto 100.0 8.3E-57 1.8E-61 509.2 40.9 381 320-744 8-407 (409)
14 PRK12735 elongation factor Tu; 100.0 4E-56 8.6E-61 501.5 42.5 373 320-744 8-394 (396)
15 PRK00049 elongation factor Tu; 100.0 8.2E-56 1.8E-60 498.3 43.2 373 320-744 8-394 (396)
16 COG0050 TufB GTPases - transla 100.0 1.4E-56 2.9E-61 444.5 28.5 372 319-744 7-392 (394)
17 PRK12736 elongation factor Tu; 100.0 2.8E-55 6E-60 494.3 41.9 371 320-744 8-392 (394)
18 TIGR00485 EF-Tu translation el 100.0 6E-55 1.3E-59 492.8 41.6 371 320-744 8-392 (394)
19 KOG0460|consensus 100.0 1.2E-56 2.5E-61 453.3 23.9 377 319-746 49-438 (449)
20 PLN03127 Elongation factor Tu; 100.0 5E-55 1.1E-59 494.5 39.7 371 319-744 56-445 (447)
21 PTZ00327 eukaryotic translatio 100.0 9.6E-52 2.1E-56 465.3 38.8 348 320-743 30-451 (460)
22 PRK12563 sulfate adenylyltrans 100.0 8.8E-53 1.9E-57 441.1 26.2 295 15-310 15-310 (312)
23 TIGR02039 CysD sulfate adenyly 100.0 2.2E-52 4.7E-57 438.1 25.4 291 19-310 1-292 (294)
24 PRK05253 sulfate adenylyltrans 100.0 1.7E-51 3.6E-56 437.0 26.8 296 14-310 4-299 (301)
25 PRK10512 selenocysteinyl-tRNA- 100.0 3.9E-49 8.4E-54 462.1 39.7 340 325-749 1-345 (614)
26 TIGR03680 eif2g_arch translati 100.0 5.1E-47 1.1E-51 429.0 38.6 332 322-730 2-392 (406)
27 PRK04000 translation initiatio 100.0 8.9E-47 1.9E-51 425.9 38.3 334 320-730 5-397 (411)
28 COG3276 SelB Selenocysteine-sp 100.0 3.4E-47 7.3E-52 403.9 29.5 339 325-749 1-344 (447)
29 TIGR00475 selB selenocysteine- 100.0 2.2E-46 4.8E-51 438.4 39.0 335 325-744 1-338 (581)
30 COG5258 GTPBP1 GTPase [General 100.0 3.9E-46 8.5E-51 382.4 28.8 359 319-744 112-526 (527)
31 COG0007 CysG Uroporphyrinogen- 100.0 8.2E-43 1.8E-47 349.2 24.6 229 736-964 3-235 (244)
32 COG5257 GCD11 Translation init 100.0 1.4E-39 3E-44 327.8 31.5 331 322-728 8-396 (415)
33 COG2875 CobM Precorrin-4 methy 100.0 2.3E-39 5E-44 312.4 21.6 224 736-964 2-232 (254)
34 KOG0463|consensus 100.0 1.2E-39 2.6E-44 332.6 20.4 357 324-746 133-548 (641)
35 PRK07168 bifunctional uroporph 100.0 9.8E-37 2.1E-41 345.0 24.2 228 737-965 3-237 (474)
36 KOG0461|consensus 100.0 2.6E-36 5.6E-41 305.5 22.0 343 323-718 6-381 (522)
37 TIGR01394 TypA_BipA GTP-bindin 100.0 2.4E-35 5.3E-40 343.9 29.8 278 324-636 1-289 (594)
38 PRK06136 uroporphyrin-III C-me 100.0 1.7E-35 3.6E-40 314.9 25.0 231 736-966 2-240 (249)
39 PRK15473 cbiF cobalt-precorrin 100.0 2E-35 4.4E-40 313.0 23.9 228 735-967 6-240 (257)
40 PLN02625 uroporphyrin-III C-me 100.0 3.8E-35 8.3E-40 312.1 25.1 232 735-966 13-252 (263)
41 KOG1143|consensus 100.0 7.3E-35 1.6E-39 297.7 23.9 360 322-746 165-584 (591)
42 KOG0462|consensus 100.0 1.5E-35 3.2E-40 318.8 19.0 269 320-635 56-332 (650)
43 COG1217 TypA Predicted membran 100.0 1.4E-34 3.1E-39 304.8 25.2 280 322-636 3-293 (603)
44 TIGR01469 cobA_cysG_Cterm urop 100.0 1.3E-34 2.8E-39 305.9 24.9 226 739-964 2-234 (236)
45 KOG0052|consensus 100.0 3.1E-36 6.8E-41 316.9 12.3 356 320-739 3-366 (391)
46 TIGR01465 cobM_cbiF precorrin- 100.0 1.2E-34 2.5E-39 304.6 23.7 221 739-964 1-228 (229)
47 TIGR02057 PAPS_reductase phosp 100.0 1.3E-35 2.9E-40 305.4 16.1 191 24-272 11-209 (226)
48 COG0175 CysH 3'-phosphoadenosi 100.0 8.3E-35 1.8E-39 306.3 19.5 216 18-291 18-240 (261)
49 cd04166 CysN_ATPS CysN_ATPS su 100.0 4.8E-34 1E-38 294.7 23.2 208 326-542 1-208 (208)
50 COG0481 LepA Membrane GTPase L 100.0 1E-33 2.2E-38 299.5 24.2 310 320-702 5-329 (603)
51 cd01883 EF1_alpha Eukaryotic e 100.0 5.7E-34 1.2E-38 296.5 21.7 214 326-541 1-218 (219)
52 PRK10637 cysG siroheme synthas 100.0 1.6E-33 3.5E-38 322.6 25.2 232 735-966 214-448 (457)
53 PRK10218 GTP-binding protein; 100.0 4.7E-33 1E-37 323.8 28.4 279 323-636 4-293 (607)
54 KOG1527|consensus 100.0 3.4E-34 7.3E-39 289.3 16.1 231 735-965 254-488 (506)
55 TIGR00434 cysH phosophoadenyly 100.0 2.9E-34 6.2E-39 296.6 15.9 189 26-273 1-195 (212)
56 TIGR01393 lepA GTP-binding pro 100.0 7.3E-33 1.6E-37 324.4 28.8 267 323-636 2-278 (595)
57 PRK15478 cbiH cobalt-precorrin 100.0 2.9E-33 6.2E-38 291.4 22.1 218 738-963 1-225 (241)
58 PRK05433 GTP-binding protein L 100.0 7.3E-33 1.6E-37 324.7 28.1 268 321-636 4-282 (600)
59 TIGR00522 dph5 diphthine synth 100.0 2.2E-33 4.7E-38 295.7 19.3 218 738-964 1-243 (257)
60 PRK02090 phosphoadenosine phos 100.0 7.4E-34 1.6E-38 297.8 15.4 186 23-271 25-218 (241)
61 PRK08557 hypothetical protein; 100.0 1.2E-32 2.6E-37 304.5 17.9 213 12-283 152-374 (417)
62 TIGR00424 APS_reduc 5'-adenyly 100.0 2E-32 4.3E-37 304.9 17.8 196 24-272 101-304 (463)
63 PLN02309 5'-adenylylsulfate re 100.0 3.5E-32 7.5E-37 303.1 18.0 196 24-272 96-299 (457)
64 cd01884 EF_Tu EF-Tu subfamily. 100.0 2E-31 4.3E-36 269.9 20.6 190 323-540 1-193 (195)
65 PRK05765 precorrin-3B C17-meth 100.0 1.9E-31 4.2E-36 280.1 21.1 215 737-964 2-227 (246)
66 PRK05948 precorrin-2 methyltra 100.0 3.9E-31 8.5E-36 273.3 20.6 220 735-962 2-235 (238)
67 PTZ00175 diphthine synthase; P 100.0 1.1E-30 2.4E-35 273.9 22.9 217 738-963 2-257 (270)
68 PRK13794 hypothetical protein; 100.0 2.2E-31 4.8E-36 303.0 17.1 212 12-281 221-438 (479)
69 PF00590 TP_methylase: Tetrapy 100.0 5.8E-31 1.3E-35 273.5 18.4 206 738-945 1-210 (210)
70 COG2243 CobF Precorrin-2 methy 100.0 8.5E-31 1.8E-35 261.7 18.2 216 736-960 1-228 (234)
71 PRK05990 precorrin-2 C(20)-met 100.0 1.4E-30 3.1E-35 272.3 19.6 216 736-961 2-236 (241)
72 PRK14994 SAM-dependent 16S rib 100.0 6.4E-30 1.4E-34 270.2 22.4 218 735-961 10-234 (287)
73 PF01507 PAPS_reduct: Phosphoa 100.0 1.6E-31 3.4E-36 269.2 9.8 170 39-266 1-174 (174)
74 TIGR01467 cobI_cbiL precorrin- 100.0 4.6E-30 1E-34 269.0 20.5 215 737-959 1-228 (230)
75 PRK05576 cobalt-precorrin-2 C( 100.0 1.1E-29 2.4E-34 265.2 19.5 213 736-960 1-225 (229)
76 TIGR00487 IF-2 translation ini 100.0 1.7E-28 3.6E-33 285.8 27.8 250 323-633 86-340 (587)
77 PRK13795 hypothetical protein; 100.0 1.2E-29 2.7E-34 299.5 18.1 213 12-282 217-435 (636)
78 TIGR02467 CbiE precorrin-6y C5 100.0 1.4E-29 3E-34 260.0 16.2 201 741-956 1-203 (204)
79 TIGR01466 cobJ_cbiH precorrin- 100.0 9.5E-29 2.1E-33 260.9 21.7 212 739-964 1-225 (239)
80 PRK05306 infB translation init 100.0 1.8E-28 4E-33 291.0 26.5 252 322-634 288-543 (787)
81 TIGR02055 APS_reductase thiore 100.0 1.1E-29 2.4E-34 255.7 13.6 166 46-272 1-173 (191)
82 PRK05787 cobalt-precorrin-6Y C 100.0 7.7E-29 1.7E-33 256.9 18.6 205 738-961 1-208 (210)
83 PRK07560 elongation factor EF- 100.0 2.5E-28 5.4E-33 295.7 25.0 285 320-635 16-375 (731)
84 COG1010 CobJ Precorrin-3B meth 100.0 1.8E-28 3.8E-33 238.6 18.8 217 736-963 2-229 (249)
85 PRK00007 elongation factor G; 100.0 8.8E-28 1.9E-32 289.3 28.9 281 320-635 6-394 (693)
86 PRK12739 elongation factor G; 100.0 1.1E-27 2.3E-32 288.9 28.4 272 320-635 4-391 (691)
87 PRK05991 precorrin-3B C17-meth 100.0 3.4E-28 7.4E-33 256.7 20.3 211 737-964 3-231 (250)
88 COG2241 CobL Precorrin-6B meth 100.0 1.1E-28 2.3E-33 244.1 15.1 208 738-964 1-209 (210)
89 PRK08576 hypothetical protein; 100.0 1.8E-28 3.9E-33 271.4 17.3 194 14-268 213-408 (438)
90 PRK08284 precorrin 6A synthase 100.0 7.2E-28 1.6E-32 250.7 19.5 199 737-949 2-229 (253)
91 PRK04160 diphthine synthase; P 100.0 1.6E-27 3.5E-32 253.1 21.6 215 739-961 2-240 (258)
92 PF00009 GTP_EFTU: Elongation 100.0 9.5E-28 2.1E-32 244.2 18.4 171 322-518 1-177 (188)
93 TIGR02434 CobF precorrin-6A sy 100.0 1.1E-27 2.3E-32 248.8 18.9 197 738-949 2-228 (249)
94 COG0480 FusA Translation elong 100.0 6.1E-27 1.3E-31 273.5 27.2 271 321-635 7-392 (697)
95 TIGR00484 EF-G translation elo 100.0 6.7E-27 1.5E-31 282.3 27.8 269 320-635 6-392 (689)
96 PRK00741 prfC peptide chain re 100.0 1.1E-26 2.4E-31 268.1 27.1 276 322-634 8-379 (526)
97 KOG0466|consensus 100.0 3.7E-28 8E-33 242.6 12.8 351 318-742 32-457 (466)
98 CHL00189 infB translation init 100.0 6.9E-27 1.5E-31 274.8 25.5 252 322-634 242-501 (742)
99 TIGR00503 prfC peptide chain r 99.9 5.1E-26 1.1E-30 262.6 27.1 273 321-634 8-380 (527)
100 KOG0189|consensus 99.9 8.4E-28 1.8E-32 225.6 9.5 190 25-274 33-231 (261)
101 PRK04004 translation initiatio 99.9 4.1E-26 8.8E-31 266.8 24.4 228 323-603 5-285 (586)
102 KOG1145|consensus 99.9 7.2E-26 1.6E-30 244.0 23.7 251 322-633 151-406 (683)
103 PRK06850 hypothetical protein; 99.9 1.8E-26 3.9E-31 258.0 18.2 230 20-280 16-279 (507)
104 PRK13351 elongation factor G; 99.9 1.5E-25 3.2E-30 271.8 27.1 271 321-635 5-390 (687)
105 TIGR00491 aIF-2 translation in 99.9 1.2E-25 2.5E-30 261.3 24.0 226 325-603 5-283 (590)
106 TIGR00490 aEF-2 translation el 99.9 1.2E-25 2.5E-30 271.7 23.9 285 320-635 15-374 (720)
107 TIGR03183 DNA_S_dndC putative 99.9 3.8E-26 8.3E-31 253.1 17.6 226 28-279 3-259 (447)
108 COG0532 InfB Translation initi 99.9 3E-25 6.5E-30 243.6 22.3 238 324-621 5-249 (509)
109 PRK12740 elongation factor G; 99.9 4.7E-25 1E-29 267.1 26.1 262 330-634 1-372 (668)
110 COG4108 PrfC Peptide chain rel 99.9 8.6E-26 1.9E-30 237.9 13.9 275 323-634 11-381 (528)
111 COG0313 Predicted methyltransf 99.9 8.5E-25 1.8E-29 221.1 18.7 219 735-961 3-225 (275)
112 cd01713 PAPS_reductase This do 99.9 2.3E-25 5.1E-30 224.1 14.1 158 39-219 1-165 (173)
113 PLN00116 translation elongatio 99.9 5.3E-24 1.1E-28 260.8 26.0 154 320-498 15-192 (843)
114 PTZ00416 elongation factor 2; 99.9 4.4E-23 9.5E-28 252.1 24.3 151 321-496 16-184 (836)
115 cd01885 EF2 EF2 (for archaea a 99.9 8E-24 1.7E-28 217.7 14.9 167 325-516 1-200 (222)
116 cd01888 eIF2_gamma eIF2-gamma 99.9 4.2E-23 9E-28 212.3 17.0 157 325-519 1-190 (203)
117 KOG0465|consensus 99.9 1.7E-23 3.7E-28 228.5 13.7 274 320-635 35-421 (721)
118 cd04165 GTPBP1_like GTPBP1-lik 99.9 8.4E-23 1.8E-27 211.5 17.3 175 326-541 1-224 (224)
119 COG1160 Predicted GTPases [Gen 99.9 2.3E-23 5E-28 225.2 13.5 257 221-521 76-344 (444)
120 cd01889 SelB_euk SelB subfamil 99.9 3.4E-22 7.4E-27 204.3 17.3 160 325-518 1-176 (192)
121 COG1798 DPH5 Diphthamide biosy 99.9 1.7E-22 3.7E-27 198.8 13.9 216 738-961 1-239 (260)
122 PRK14845 translation initiatio 99.9 1.9E-21 4.2E-26 235.6 25.3 226 384-633 488-782 (1049)
123 cd01886 EF-G Elongation factor 99.9 5.8E-22 1.3E-26 210.9 16.3 167 326-520 1-168 (270)
124 TIGR00096 probable S-adenosylm 99.9 1.8E-21 3.9E-26 203.4 18.5 213 738-961 1-222 (276)
125 cd04171 SelB SelB subfamily. 99.9 4.5E-21 9.7E-26 191.0 18.4 156 325-519 1-157 (164)
126 COG1159 Era GTPase [General fu 99.9 4.5E-22 9.6E-27 203.8 8.4 224 324-597 6-245 (298)
127 cd01890 LepA LepA subfamily. 99.9 1.6E-20 3.5E-25 190.0 18.0 163 325-519 1-168 (179)
128 cd01891 TypA_BipA TypA (tyrosi 99.9 1.3E-20 2.7E-25 193.1 17.3 170 324-521 2-175 (194)
129 cd04167 Snu114p Snu114p subfam 99.8 1.6E-20 3.5E-25 194.9 16.1 177 325-527 1-191 (213)
130 cd04168 TetM_like Tet(M)-like 99.8 1.7E-20 3.8E-25 196.3 16.4 131 326-479 1-131 (237)
131 KOG0467|consensus 99.8 6.3E-19 1.4E-23 197.3 20.0 172 320-516 5-205 (887)
132 cd04169 RF3 RF3 subfamily. Pe 99.8 4.1E-19 8.8E-24 189.0 17.2 137 324-480 2-139 (267)
133 cd00881 GTP_translation_factor 99.8 7.5E-19 1.6E-23 179.4 17.8 167 326-519 1-178 (189)
134 KOG3123|consensus 99.8 3.1E-19 6.8E-24 168.6 10.5 216 738-962 1-255 (272)
135 TIGR03594 GTPase_EngA ribosome 99.8 7.3E-19 1.6E-23 203.4 14.7 249 227-521 77-337 (429)
136 KOG1144|consensus 99.8 1.2E-18 2.7E-23 193.2 15.0 228 324-608 475-771 (1064)
137 PF02421 FeoB_N: Ferrous iron 99.8 7.3E-19 1.6E-23 168.4 11.6 143 325-519 1-152 (156)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4.4E-18 9.6E-23 170.2 16.5 149 326-519 2-157 (168)
139 cd01993 Alpha_ANH_like_II This 99.8 3.1E-18 6.7E-23 174.2 15.5 171 39-219 1-178 (185)
140 KOG0469|consensus 99.8 1.5E-18 3.2E-23 184.6 12.6 133 319-476 14-162 (842)
141 TIGR02432 lysidine_TilS_N tRNA 99.8 3.5E-18 7.7E-23 174.0 14.8 169 39-219 1-171 (189)
142 cd01992 PP-ATPase N-terminal d 99.8 3.5E-18 7.6E-23 173.6 14.7 165 39-219 1-167 (185)
143 PF01171 ATP_bind_3: PP-loop f 99.8 2.5E-18 5.5E-23 173.3 13.3 165 39-219 1-167 (182)
144 PRK00093 GTP-binding protein D 99.8 4.3E-18 9.4E-23 197.0 16.6 247 227-521 79-337 (435)
145 TIGR00436 era GTP-binding prot 99.8 4.1E-18 8.8E-23 183.3 14.7 147 326-520 2-156 (270)
146 KOG0464|consensus 99.8 3E-19 6.5E-24 185.6 5.6 134 322-478 35-168 (753)
147 COG3969 Predicted phosphoadeno 99.8 4.5E-18 9.8E-23 173.5 13.6 199 21-233 11-246 (407)
148 COG1160 Predicted GTPases [Gen 99.8 9.6E-18 2.1E-22 181.9 14.9 144 325-519 4-156 (444)
149 PRK10696 tRNA 2-thiocytidine b 99.7 1E-17 2.2E-22 178.1 14.8 173 33-218 25-200 (258)
150 cd04170 EF-G_bact Elongation f 99.7 2.7E-17 5.9E-22 177.0 16.7 164 326-519 1-164 (268)
151 PRK15494 era GTPase Era; Provi 99.7 5.7E-18 1.2E-22 187.0 11.5 151 322-520 50-208 (339)
152 PRK03003 GTP-binding protein D 99.7 2.8E-17 6E-22 190.6 16.6 249 227-522 116-376 (472)
153 cd04095 CysN_NoDQ_III TCysN_No 99.7 1.8E-17 3.9E-22 149.9 11.1 102 640-741 2-103 (103)
154 COG0037 MesJ tRNA(Ile)-lysidin 99.7 6.1E-17 1.3E-21 177.8 16.3 167 37-216 21-189 (298)
155 cd04160 Arfrp1 Arfrp1 subfamil 99.7 5.1E-17 1.1E-21 162.3 11.9 156 326-519 1-160 (167)
156 cd01895 EngA2 EngA2 subfamily. 99.7 2.1E-16 4.6E-21 158.7 15.9 154 324-519 2-166 (174)
157 TIGR03598 GTPase_YsxC ribosome 99.7 5.9E-16 1.3E-20 156.3 17.3 154 319-517 13-179 (179)
158 PRK00089 era GTPase Era; Revie 99.7 3.1E-16 6.8E-21 171.4 14.2 151 324-520 5-163 (292)
159 cd01864 Rab19 Rab19 subfamily. 99.7 4.4E-16 9.5E-21 155.2 14.1 151 323-519 2-157 (165)
160 KOG0468|consensus 99.7 1.9E-15 4E-20 166.5 19.5 134 320-477 124-262 (971)
161 cd03705 EF1_alpha_III Domain I 99.7 2.4E-16 5.3E-21 143.1 10.2 100 640-741 2-104 (104)
162 PRK09518 bifunctional cytidyla 99.7 5.5E-16 1.2E-20 188.2 16.4 250 226-521 352-614 (712)
163 cd04093 HBS1_C HBS1_C: this fa 99.7 6.3E-16 1.4E-20 141.1 12.6 102 640-743 2-106 (107)
164 cd01894 EngA1 EngA1 subfamily. 99.7 5.3E-16 1.1E-20 153.1 13.0 141 328-519 1-149 (157)
165 TIGR03156 GTP_HflX GTP-binding 99.6 8E-16 1.7E-20 170.0 11.8 147 320-519 185-343 (351)
166 COG2262 HflX GTPases [General 99.6 1.1E-15 2.4E-20 163.2 11.8 158 311-519 179-347 (411)
167 cd04124 RabL2 RabL2 subfamily. 99.6 6.7E-15 1.4E-19 145.9 16.7 144 325-519 1-149 (161)
168 cd03704 eRF3c_III This family 99.6 1.5E-15 3.4E-20 138.5 11.0 101 640-742 2-106 (108)
169 cd04154 Arl2 Arl2 subfamily. 99.6 3.1E-15 6.7E-20 150.3 14.3 148 323-519 13-166 (173)
170 TIGR03594 GTPase_EngA ribosome 99.6 4E-15 8.6E-20 172.2 17.1 143 326-519 1-151 (429)
171 cd01878 HflX HflX subfamily. 99.6 2.5E-15 5.4E-20 155.4 13.7 150 319-519 36-196 (204)
172 cd04106 Rab23_lke Rab23-like s 99.6 5.5E-15 1.2E-19 146.7 15.1 148 325-519 1-154 (162)
173 PRK04213 GTP-binding protein; 99.6 6.1E-15 1.3E-19 152.1 15.5 152 322-519 7-183 (201)
174 cd01898 Obg Obg subfamily. Th 99.6 4.3E-15 9.3E-20 148.8 14.0 149 326-519 2-162 (170)
175 cd01861 Rab6 Rab6 subfamily. 99.6 7.1E-15 1.5E-19 145.8 15.3 149 325-519 1-153 (161)
176 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 6.5E-15 1.4E-19 146.9 15.1 150 324-519 2-155 (166)
177 cd01879 FeoB Ferrous iron tran 99.6 1.6E-15 3.5E-20 149.8 10.6 140 329-519 1-148 (158)
178 cd01897 NOG NOG1 is a nucleola 99.6 4.6E-15 9.9E-20 148.3 13.8 149 325-519 1-159 (168)
179 PRK03003 GTP-binding protein D 99.6 9.5E-15 2.1E-19 169.5 18.4 146 323-519 37-190 (472)
180 COG0486 ThdF Predicted GTPase 99.6 1.4E-15 2.9E-20 165.8 10.5 146 323-521 216-369 (454)
181 cd01867 Rab8_Rab10_Rab13_like 99.6 4E-15 8.6E-20 148.6 13.0 151 323-519 2-156 (167)
182 cd04113 Rab4 Rab4 subfamily. 99.6 4E-15 8.7E-20 147.6 12.9 147 325-519 1-153 (161)
183 smart00175 RAB Rab subfamily o 99.6 8.2E-15 1.8E-19 145.8 15.1 148 325-519 1-153 (164)
184 cd01865 Rab3 Rab3 subfamily. 99.6 1E-14 2.2E-19 145.3 15.7 149 325-519 2-154 (165)
185 TIGR00231 small_GTP small GTP- 99.6 3.5E-15 7.5E-20 147.1 11.9 145 325-519 2-155 (161)
186 KOG0092|consensus 99.6 4.2E-15 9E-20 141.6 11.6 162 323-543 4-171 (200)
187 PRK15467 ethanolamine utilizat 99.6 5.7E-15 1.2E-19 145.3 12.8 132 326-519 3-138 (158)
188 cd01860 Rab5_related Rab5-rela 99.6 9.9E-15 2.1E-19 145.1 14.6 151 325-519 2-154 (163)
189 cd04122 Rab14 Rab14 subfamily. 99.6 1.4E-14 3E-19 144.5 15.6 150 324-519 2-155 (166)
190 KOG0084|consensus 99.6 6.8E-15 1.5E-19 140.7 12.3 154 321-519 6-163 (205)
191 cd01868 Rab11_like Rab11-like. 99.6 6.8E-15 1.5E-19 146.6 13.1 150 324-519 3-156 (165)
192 cd04145 M_R_Ras_like M-Ras/R-R 99.6 5.7E-15 1.2E-19 146.9 12.5 148 324-519 2-155 (164)
193 cd04120 Rab12 Rab12 subfamily. 99.6 7.4E-15 1.6E-19 150.0 13.5 151 326-521 2-156 (202)
194 cd04109 Rab28 Rab28 subfamily. 99.6 1.2E-14 2.7E-19 151.1 15.4 150 325-520 1-158 (215)
195 cd03693 EF1_alpha_II EF1_alpha 99.6 5.1E-15 1.1E-19 130.0 10.5 87 546-636 2-90 (91)
196 PF10662 PduV-EutP: Ethanolami 99.6 5.8E-15 1.3E-19 137.8 11.4 131 326-519 3-137 (143)
197 cd04127 Rab27A Rab27a subfamil 99.6 9.2E-15 2E-19 148.0 13.8 152 323-520 3-169 (180)
198 cd01862 Rab7 Rab7 subfamily. 99.6 1.7E-14 3.7E-19 144.8 15.6 151 325-519 1-158 (172)
199 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 7.4E-15 1.6E-19 146.8 12.7 151 326-520 2-157 (170)
200 cd04164 trmE TrmE (MnmE, ThdF, 99.6 5.7E-15 1.2E-19 145.6 11.7 139 325-519 2-148 (157)
201 cd04116 Rab9 Rab9 subfamily. 99.6 6.8E-15 1.5E-19 147.4 12.2 152 323-519 4-162 (170)
202 PRK00454 engB GTP-binding prot 99.6 3.2E-14 6.9E-19 146.2 17.4 153 320-519 20-185 (196)
203 cd04119 RJL RJL (RabJ-Like) su 99.6 1.6E-14 3.5E-19 144.2 14.9 149 325-519 1-158 (168)
204 TIGR02528 EutP ethanolamine ut 99.6 6.6E-15 1.4E-19 142.7 11.5 131 326-519 2-136 (142)
205 cd01866 Rab2 Rab2 subfamily. 99.6 2.5E-14 5.5E-19 142.9 15.7 153 323-519 3-157 (168)
206 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 4.8E-15 1E-19 152.7 10.7 150 325-520 1-160 (201)
207 COG0218 Predicted GTPase [Gene 99.6 4.1E-14 8.8E-19 138.0 16.3 157 320-521 20-190 (200)
208 cd00154 Rab Rab family. Rab G 99.6 3.2E-14 6.9E-19 140.3 16.0 149 325-519 1-153 (159)
209 PRK10660 tilS tRNA(Ile)-lysidi 99.6 1.3E-14 2.8E-19 165.0 14.8 173 28-219 6-181 (436)
210 cd04149 Arf6 Arf6 subfamily. 99.6 1E-14 2.2E-19 145.5 12.3 148 323-519 8-161 (168)
211 cd04121 Rab40 Rab40 subfamily. 99.6 2.7E-14 5.9E-19 144.5 15.3 153 322-520 4-159 (189)
212 cd04110 Rab35 Rab35 subfamily. 99.6 2.6E-14 5.6E-19 146.9 15.3 152 323-520 5-159 (199)
213 cd04151 Arl1 Arl1 subfamily. 99.6 1.4E-14 3E-19 143.2 12.9 147 326-519 1-151 (158)
214 cd04157 Arl6 Arl6 subfamily. 99.6 1.2E-14 2.5E-19 144.4 12.3 148 326-519 1-155 (162)
215 PRK09554 feoB ferrous iron tra 99.6 1E-14 2.2E-19 175.7 14.0 146 324-520 3-160 (772)
216 cd04150 Arf1_5_like Arf1-Arf5- 99.6 1.3E-14 2.7E-19 143.5 12.3 149 325-519 1-152 (159)
217 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 1.5E-14 3.2E-19 145.4 12.9 152 323-519 14-167 (174)
218 cd04112 Rab26 Rab26 subfamily. 99.6 3.1E-14 6.6E-19 145.4 14.9 150 325-519 1-154 (191)
219 cd04128 Spg1 Spg1p. Spg1p (se 99.6 4.4E-14 9.6E-19 142.6 15.5 153 325-520 1-158 (182)
220 PRK00093 GTP-binding protein D 99.6 2.7E-14 5.8E-19 165.5 15.9 144 325-519 2-153 (435)
221 cd04114 Rab30 Rab30 subfamily. 99.6 4.5E-14 9.9E-19 141.2 15.5 150 322-519 5-160 (169)
222 cd01863 Rab18 Rab18 subfamily. 99.6 2.5E-14 5.4E-19 141.9 13.4 150 325-519 1-153 (161)
223 PRK05291 trmE tRNA modificatio 99.6 1E-14 2.3E-19 167.1 12.1 141 323-520 214-362 (449)
224 PRK12296 obgE GTPase CgtA; Rev 99.6 2.6E-14 5.7E-19 161.8 15.1 160 321-521 156-333 (500)
225 KOG1423|consensus 99.6 8.7E-15 1.9E-19 148.5 9.9 162 320-521 68-264 (379)
226 cd04138 H_N_K_Ras_like H-Ras/N 99.6 2.1E-14 4.6E-19 142.4 12.7 147 325-519 2-153 (162)
227 PRK11058 GTPase HflX; Provisio 99.6 1.2E-14 2.7E-19 164.2 11.9 147 322-519 195-353 (426)
228 cd01513 Translation_factor_III 99.6 1.9E-14 4.2E-19 130.4 10.8 99 640-740 2-101 (102)
229 cd04142 RRP22 RRP22 subfamily. 99.6 5.8E-14 1.3E-18 143.6 15.6 149 325-520 1-166 (198)
230 PRK12298 obgE GTPase CgtA; Rev 99.6 2.9E-14 6.2E-19 159.3 14.4 156 323-520 158-325 (390)
231 PLN00223 ADP-ribosylation fact 99.6 2.8E-14 6E-19 144.1 13.0 147 322-519 15-169 (181)
232 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 2.5E-14 5.5E-19 144.9 12.8 153 324-520 3-162 (183)
233 cd01893 Miro1 Miro1 subfamily. 99.6 5.2E-14 1.1E-18 140.3 14.9 152 325-519 1-155 (166)
234 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.8E-14 6E-19 141.1 12.8 148 326-519 1-151 (158)
235 smart00173 RAS Ras subfamily o 99.6 1.6E-14 3.5E-19 143.7 11.2 148 325-519 1-153 (164)
236 cd04136 Rap_like Rap-like subf 99.6 2.1E-14 4.7E-19 142.6 11.9 147 325-519 2-154 (163)
237 cd04115 Rab33B_Rab33A Rab33B/R 99.6 3.6E-14 7.7E-19 142.1 13.4 150 324-519 2-160 (170)
238 PRK12299 obgE GTPase CgtA; Rev 99.6 3.1E-14 6.7E-19 155.9 14.0 152 322-519 156-319 (335)
239 cd00879 Sar1 Sar1 subfamily. 99.5 3.6E-14 7.9E-19 144.9 13.3 148 323-519 18-182 (190)
240 PRK09518 bifunctional cytidyla 99.5 5.5E-14 1.2E-18 170.8 17.2 149 320-519 271-427 (712)
241 cd04118 Rab24 Rab24 subfamily. 99.5 4.9E-14 1.1E-18 144.3 14.2 154 325-520 1-158 (193)
242 cd04158 ARD1 ARD1 subfamily. 99.5 1.9E-14 4.1E-19 143.9 10.6 146 326-519 1-152 (169)
243 cd03698 eRF3_II_like eRF3_II_l 99.5 3.2E-14 7E-19 122.7 10.2 81 548-633 1-83 (83)
244 PLN03118 Rab family protein; P 99.5 1E-13 2.2E-18 144.0 15.9 152 320-520 10-169 (211)
245 cd04140 ARHI_like ARHI subfami 99.5 7E-14 1.5E-18 139.3 14.1 149 325-519 2-156 (165)
246 KOG0098|consensus 99.5 3.1E-14 6.8E-19 134.0 10.7 150 323-520 5-160 (216)
247 TIGR00268 conserved hypothetic 99.5 7.4E-14 1.6E-18 147.9 15.1 156 28-216 3-161 (252)
248 cd04155 Arl3 Arl3 subfamily. 99.5 6.1E-14 1.3E-18 140.9 13.8 148 320-519 10-166 (173)
249 KOG0094|consensus 99.5 1.3E-13 2.8E-18 131.1 14.8 151 323-519 21-176 (221)
250 cd04175 Rap1 Rap1 subgroup. T 99.5 2.8E-14 6E-19 142.0 10.9 147 325-519 2-154 (164)
251 cd04111 Rab39 Rab39 subfamily. 99.5 5.7E-14 1.2E-18 145.4 13.4 151 324-520 2-158 (211)
252 TIGR02729 Obg_CgtA Obg family 99.5 5.5E-14 1.2E-18 154.0 13.9 155 321-519 154-320 (329)
253 cd04144 Ras2 Ras2 subfamily. 99.5 3.8E-14 8.3E-19 144.6 11.8 147 326-520 1-155 (190)
254 cd04156 ARLTS1 ARLTS1 subfamil 99.5 3.8E-14 8.3E-19 140.4 11.4 147 326-519 1-153 (160)
255 cd04163 Era Era subfamily. Er 99.5 1.8E-13 3.9E-18 136.2 16.3 150 324-519 3-160 (168)
256 PRK00919 GMP synthase subunit 99.5 1.8E-13 3.9E-18 146.3 17.0 177 19-219 4-183 (307)
257 cd00877 Ran Ran (Ras-related n 99.5 9.1E-14 2E-18 138.5 13.8 146 325-519 1-150 (166)
258 smart00177 ARF ARF-like small 99.5 9.7E-14 2.1E-18 139.5 14.1 151 323-519 12-165 (175)
259 smart00178 SAR Sar1p-like memb 99.5 6.1E-14 1.3E-18 142.2 12.6 151 323-519 16-176 (184)
260 PLN03110 Rab GTPase; Provision 99.5 8.7E-14 1.9E-18 144.7 14.1 152 322-520 10-166 (216)
261 cd04126 Rab20 Rab20 subfamily. 99.5 3.6E-14 7.8E-19 146.6 11.0 155 325-521 1-183 (220)
262 PTZ00369 Ras-like protein; Pro 99.5 5.7E-14 1.2E-18 143.2 12.2 151 323-519 4-158 (189)
263 PTZ00133 ADP-ribosylation fact 99.5 1.1E-13 2.3E-18 140.0 14.0 151 323-519 16-169 (182)
264 cd03695 CysN_NodQ_II CysN_NodQ 99.5 6.5E-14 1.4E-18 119.7 10.4 81 549-633 1-81 (81)
265 cd01882 BMS1 Bms1. Bms1 is an 99.5 2.2E-13 4.8E-18 141.9 16.7 163 321-539 36-200 (225)
266 cd04101 RabL4 RabL4 (Rab-like4 99.5 1.8E-13 3.9E-18 136.2 15.3 150 325-519 1-155 (164)
267 cd04132 Rho4_like Rho4-like su 99.5 1.1E-13 2.4E-18 141.0 13.9 154 325-520 1-159 (187)
268 cd04123 Rab21 Rab21 subfamily. 99.5 9E-14 2E-18 137.9 12.8 149 325-519 1-153 (162)
269 cd01874 Cdc42 Cdc42 subfamily. 99.5 1.1E-13 2.4E-18 139.0 13.5 153 324-519 1-166 (175)
270 TIGR00450 mnmE_trmE_thdF tRNA 99.5 8.5E-14 1.8E-18 158.4 14.2 143 322-519 201-351 (442)
271 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 9.7E-14 2.1E-18 139.0 13.0 146 325-519 3-155 (172)
272 PRK00074 guaA GMP synthase; Re 99.5 2.4E-13 5.1E-18 157.7 17.7 183 19-219 198-385 (511)
273 cd04161 Arl2l1_Arl13_like Arl2 99.5 9.5E-14 2.1E-18 138.5 12.6 148 326-518 1-159 (167)
274 cd01990 Alpha_ANH_like_I This 99.5 1E-13 2.2E-18 142.6 13.1 146 40-215 1-148 (202)
275 cd04147 Ras_dva Ras-dva subfam 99.5 1.6E-13 3.5E-18 140.9 14.4 151 326-520 1-155 (198)
276 cd04117 Rab15 Rab15 subfamily. 99.5 2.8E-13 6.1E-18 134.3 15.6 149 325-519 1-153 (161)
277 cd04159 Arl10_like Arl10-like 99.5 1.5E-13 3.2E-18 135.6 13.6 147 327-519 2-152 (159)
278 KOG0078|consensus 99.5 1.4E-13 3.1E-18 134.1 12.8 155 320-519 8-165 (207)
279 cd04089 eRF3_II eRF3_II: domai 99.5 9E-14 1.9E-18 119.6 10.2 80 548-633 1-82 (82)
280 PLN03108 Rab family protein; P 99.5 2.4E-13 5.1E-18 140.8 15.2 151 323-519 5-159 (210)
281 cd04139 RalA_RalB RalA/RalB su 99.5 1E-13 2.2E-18 137.9 12.1 150 325-519 1-153 (164)
282 COG0370 FeoB Fe2+ transport sy 99.5 8.6E-14 1.9E-18 158.2 12.8 140 325-519 4-155 (653)
283 cd04176 Rap2 Rap2 subgroup. T 99.5 1.4E-13 3.1E-18 136.7 13.1 147 325-519 2-154 (163)
284 COG1606 ATP-utilizing enzymes 99.5 1.9E-13 4.2E-18 136.0 13.6 156 27-216 7-167 (269)
285 cd04135 Tc10 TC10 subfamily. 99.5 1.1E-13 2.3E-18 139.3 11.9 153 325-519 1-165 (174)
286 cd01892 Miro2 Miro2 subfamily. 99.5 9E-14 2E-18 138.9 11.3 154 322-519 2-157 (169)
287 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 8.2E-14 1.8E-18 138.4 10.9 147 327-519 2-157 (164)
288 cd01881 Obg_like The Obg-like 99.5 1.1E-13 2.3E-18 139.6 11.7 150 329-519 1-168 (176)
289 PRK12297 obgE GTPase CgtA; Rev 99.5 1.9E-13 4.2E-18 153.2 14.8 152 323-521 157-320 (424)
290 TIGR00884 guaA_Cterm GMP synth 99.5 4.9E-13 1.1E-17 144.4 17.2 176 23-219 3-185 (311)
291 cd00157 Rho Rho (Ras homology) 99.5 1.5E-13 3.2E-18 137.8 12.2 154 325-519 1-164 (171)
292 COG1163 DRG Predicted GTPase [ 99.5 1.8E-13 3.8E-18 141.0 12.7 134 274-440 11-153 (365)
293 PRK00143 mnmA tRNA-specific 2- 99.5 2.7E-13 5.9E-18 149.6 14.9 160 39-216 2-183 (346)
294 cd00876 Ras Ras family. The R 99.5 2.7E-13 5.9E-18 134.1 13.5 147 326-519 1-152 (160)
295 COG2229 Predicted GTPase [Gene 99.5 7.9E-13 1.7E-17 125.7 15.3 158 323-518 9-168 (187)
296 cd04125 RabA_like RabA-like su 99.5 3E-13 6.5E-18 137.9 13.5 150 325-520 1-154 (188)
297 PLN03071 GTP-binding nuclear p 99.5 3.7E-13 8E-18 140.1 14.4 150 322-519 11-163 (219)
298 cd04177 RSR1 RSR1 subgroup. R 99.5 2.6E-13 5.6E-18 135.6 12.7 148 325-519 2-155 (168)
299 cd01875 RhoG RhoG subfamily. 99.5 1.1E-12 2.4E-17 133.7 17.2 153 324-519 3-168 (191)
300 cd04143 Rhes_like Rhes_like su 99.5 2.9E-13 6.3E-18 142.8 13.2 150 325-519 1-162 (247)
301 cd00880 Era_like Era (E. coli 99.5 3.8E-13 8.3E-18 132.7 13.1 147 329-519 1-155 (163)
302 PF03143 GTP_EFTU_D3: Elongati 99.5 2.6E-13 5.5E-18 121.2 10.4 96 637-743 1-97 (99)
303 cd04133 Rop_like Rop subfamily 99.5 4.4E-13 9.5E-18 134.1 13.3 153 325-519 2-164 (176)
304 cd01712 ThiI ThiI is required 99.5 4.9E-13 1.1E-17 134.4 13.5 153 39-218 1-161 (177)
305 cd01997 GMP_synthase_C The C-t 99.5 6E-13 1.3E-17 142.2 14.8 165 39-219 1-170 (295)
306 cd04146 RERG_RasL11_like RERG/ 99.5 2.5E-13 5.3E-18 135.4 10.9 147 326-519 1-155 (165)
307 TIGR00437 feoB ferrous iron tr 99.5 2.4E-13 5.3E-18 160.3 12.6 139 331-520 1-147 (591)
308 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 9.7E-13 2.1E-17 132.5 15.0 156 322-519 3-171 (182)
309 cd01871 Rac1_like Rac1-like su 99.5 5.5E-13 1.2E-17 133.8 13.1 153 325-519 2-166 (174)
310 PRK09866 hypothetical protein; 99.5 6.8E-13 1.5E-17 149.8 15.0 110 403-519 229-344 (741)
311 cd04137 RheB Rheb (Ras Homolog 99.5 7E-13 1.5E-17 134.2 13.9 147 325-520 2-155 (180)
312 KOG0394|consensus 99.5 6.1E-14 1.3E-18 131.9 5.5 160 320-520 5-170 (210)
313 cd04134 Rho3 Rho3 subfamily. 99.5 6.7E-13 1.5E-17 135.2 13.6 153 325-519 1-165 (189)
314 cd01876 YihA_EngB The YihA (En 99.5 1.6E-12 3.5E-17 129.7 16.2 148 327-519 2-162 (170)
315 cd04130 Wrch_1 Wrch-1 subfamil 99.5 3.2E-13 7E-18 135.6 11.1 154 325-519 1-165 (173)
316 cd03697 EFTU_II EFTU_II: Elong 99.4 3.4E-13 7.3E-18 117.4 9.1 82 549-634 1-86 (87)
317 COG3956 Protein containing tet 99.4 5.6E-13 1.2E-17 135.7 11.9 201 737-948 3-211 (488)
318 cd03694 GTPBP_II Domain II of 99.4 4.3E-13 9.4E-18 116.6 9.6 81 549-633 1-87 (87)
319 cd04131 Rnd Rnd subfamily. Th 99.4 1.6E-12 3.4E-17 130.7 15.1 154 325-519 2-167 (178)
320 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 1.3E-12 2.9E-17 135.7 14.9 158 323-521 12-181 (232)
321 smart00174 RHO Rho (Ras homolo 99.4 1.2E-12 2.5E-17 131.7 14.1 151 327-519 1-163 (174)
322 cd01870 RhoA_like RhoA-like su 99.4 1.3E-12 2.8E-17 131.5 14.4 151 325-519 2-166 (175)
323 cd03696 selB_II selB_II: this 99.4 7.8E-13 1.7E-17 114.3 9.9 81 549-633 1-83 (83)
324 KOG1489|consensus 99.4 6.5E-13 1.4E-17 136.1 10.6 155 320-519 192-358 (366)
325 PF00025 Arf: ADP-ribosylation 99.4 1.6E-12 3.5E-17 130.3 13.4 152 321-518 11-166 (175)
326 cd04148 RGK RGK subfamily. Th 99.4 9.7E-13 2.1E-17 137.2 11.8 149 325-520 1-155 (221)
327 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 2.7E-12 5.9E-17 132.7 14.8 152 325-520 2-168 (222)
328 KOG0086|consensus 99.4 9.4E-13 2E-17 119.1 9.7 150 323-519 8-162 (214)
329 smart00176 RAN Ran (Ras-relate 99.4 2.4E-12 5.3E-17 131.3 13.9 141 330-520 1-146 (200)
330 PRK08349 hypothetical protein; 99.4 3E-12 6.5E-17 130.7 14.3 149 39-214 2-159 (198)
331 cd01998 tRNA_Me_trans tRNA met 99.4 2.8E-12 6.1E-17 141.9 15.2 163 39-215 1-183 (349)
332 TIGR00420 trmU tRNA (5-methyla 99.4 2.7E-12 5.8E-17 141.6 14.4 162 39-216 2-187 (352)
333 KOG0073|consensus 99.4 2.3E-12 4.9E-17 119.0 11.3 149 323-518 15-168 (185)
334 COG1084 Predicted GTPase [Gene 99.4 3.1E-12 6.8E-17 132.7 13.8 152 323-519 167-327 (346)
335 PF01926 MMR_HSR1: 50S ribosom 99.4 2.5E-12 5.5E-17 119.7 11.8 107 326-473 1-116 (116)
336 KOG0080|consensus 99.4 2.5E-12 5.4E-17 117.7 10.6 158 322-538 9-173 (209)
337 KOG1191|consensus 99.4 6.5E-13 1.4E-17 144.0 8.0 156 323-521 267-443 (531)
338 PF00071 Ras: Ras family; Int 99.4 4.5E-12 9.7E-17 125.8 13.5 148 326-519 1-152 (162)
339 cd01896 DRG The developmentall 99.4 3.2E-12 7E-17 133.9 12.9 81 326-439 2-89 (233)
340 PRK14561 hypothetical protein; 99.4 5.4E-12 1.2E-16 127.6 13.2 142 39-211 2-146 (194)
341 cd01995 ExsB ExsB is a transcr 99.4 6.2E-12 1.3E-16 125.5 13.1 142 39-220 1-145 (169)
342 cd00882 Ras_like_GTPase Ras-li 99.3 6.8E-12 1.5E-16 122.3 12.4 143 329-519 1-151 (157)
343 PRK14665 mnmA tRNA-specific 2- 99.3 6.6E-12 1.4E-16 138.1 12.3 166 34-214 2-181 (360)
344 cd04104 p47_IIGP_like p47 (47- 99.3 2.1E-11 4.5E-16 124.8 15.0 152 325-518 2-174 (197)
345 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 2.4E-11 5.1E-16 124.5 14.2 152 325-518 1-174 (196)
346 KOG0087|consensus 99.3 1.4E-11 3E-16 119.4 11.4 154 322-520 12-168 (222)
347 TIGR00552 nadE NAD+ synthetase 99.3 2.7E-11 5.8E-16 128.4 14.5 162 23-216 6-178 (250)
348 KOG0093|consensus 99.3 7.2E-12 1.6E-16 112.9 8.4 153 323-520 20-175 (193)
349 cd04103 Centaurin_gamma Centau 99.3 9.1E-12 2E-16 122.7 9.9 145 325-519 1-150 (158)
350 PRK14664 tRNA-specific 2-thiou 99.3 7.4E-12 1.6E-16 137.2 10.0 166 35-216 3-178 (362)
351 cd04102 RabL3 RabL3 (Rab-like3 99.3 5E-11 1.1E-15 121.6 15.0 152 325-518 1-180 (202)
352 cd04129 Rho2 Rho2 subfamily. 99.3 1.7E-11 3.6E-16 124.8 11.6 153 325-519 2-164 (187)
353 PTZ00132 GTP-binding nuclear p 99.3 3.5E-11 7.5E-16 125.4 13.9 151 320-519 5-159 (215)
354 cd04105 SR_beta Signal recogni 99.3 3.7E-11 8.1E-16 123.4 13.4 114 326-479 2-124 (203)
355 cd01873 RhoBTB RhoBTB subfamil 99.3 4.6E-11 9.9E-16 121.7 13.5 106 403-519 65-187 (195)
356 PRK13820 argininosuccinate syn 99.3 5.2E-11 1.1E-15 131.4 14.1 148 37-216 2-164 (394)
357 KOG0095|consensus 99.3 7.3E-11 1.6E-15 106.5 12.2 150 323-519 6-160 (213)
358 COG3596 Predicted GTPase [Gene 99.2 5.4E-11 1.2E-15 120.7 12.6 155 321-519 36-213 (296)
359 PRK08384 thiamine biosynthesis 99.2 1.1E-10 2.4E-15 128.9 15.6 149 38-216 181-341 (381)
360 PLN02347 GMP synthetase 99.2 1.1E-10 2.3E-15 135.0 14.5 180 19-219 211-409 (536)
361 KOG0097|consensus 99.2 1.5E-10 3.2E-15 103.3 11.9 148 322-519 9-164 (215)
362 cd01850 CDC_Septin CDC/Septin. 99.2 4.6E-10 9.9E-15 120.4 17.5 152 323-510 3-184 (276)
363 PLN00023 GTP-binding protein; 99.2 1.9E-10 4E-15 122.6 13.8 141 321-500 18-189 (334)
364 cd00553 NAD_synthase NAD+ synt 99.2 1.8E-10 3.8E-15 122.1 13.7 168 20-218 4-182 (248)
365 TIGR00032 argG argininosuccina 99.2 2.1E-10 4.5E-15 127.3 14.5 148 39-216 1-163 (394)
366 TIGR00364 exsB protein. This p 99.2 2.7E-10 5.9E-15 116.9 14.2 159 40-219 1-182 (201)
367 PRK13980 NAD synthetase; Provi 99.2 4.1E-10 9E-15 120.2 15.4 165 19-214 10-180 (265)
368 KOG0075|consensus 99.2 1.2E-10 2.5E-15 105.4 9.0 148 324-518 20-172 (186)
369 KOG0410|consensus 99.2 8.1E-11 1.8E-15 120.8 8.6 146 318-519 172-332 (410)
370 KOG0091|consensus 99.2 2.7E-10 5.9E-15 104.8 11.1 149 324-519 8-164 (213)
371 COG0536 Obg Predicted GTPase [ 99.2 2.1E-10 4.6E-15 119.7 11.7 152 324-521 159-326 (369)
372 KOG0079|consensus 99.2 1.5E-10 3.3E-15 104.5 9.2 150 323-519 7-160 (198)
373 PRK00509 argininosuccinate syn 99.2 3.1E-10 6.8E-15 125.3 13.8 148 38-216 3-167 (399)
374 KOG0076|consensus 99.1 9.2E-11 2E-15 109.6 8.0 163 321-518 14-177 (197)
375 cd01999 Argininosuccinate_Synt 99.1 4.2E-10 9E-15 124.6 14.0 150 40-218 1-166 (385)
376 TIGR00342 thiazole biosynthesi 99.1 3.5E-10 7.6E-15 126.4 13.5 146 38-213 173-328 (371)
377 COG1100 GTPase SAR1 and relate 99.1 7.4E-10 1.6E-14 115.9 14.7 157 325-520 6-177 (219)
378 PF09439 SRPRB: Signal recogni 99.1 3.9E-10 8.4E-15 110.8 11.4 117 325-480 4-128 (181)
379 cd03708 GTPBP_III Domain III o 99.1 5.4E-10 1.2E-14 97.7 10.2 83 640-743 2-86 (87)
380 cd03706 mtEFTU_III Domain III 99.1 5.9E-10 1.3E-14 98.6 10.5 85 640-743 2-92 (93)
381 cd03707 EFTU_III Domain III of 99.1 5.2E-10 1.1E-14 98.4 9.7 81 641-740 3-89 (90)
382 PF08477 Miro: Miro-like prote 99.1 2.5E-10 5.5E-15 106.7 7.4 115 326-475 1-119 (119)
383 KOG0070|consensus 99.1 1.8E-10 3.9E-15 110.2 6.3 152 321-518 14-168 (181)
384 PRK04527 argininosuccinate syn 99.1 9.5E-10 2.1E-14 120.8 12.9 147 38-216 3-169 (400)
385 PRK11106 queuosine biosynthesi 99.1 2.1E-09 4.5E-14 110.7 14.4 156 38-215 2-180 (231)
386 cd01899 Ygr210 Ygr210 subfamil 99.0 2.6E-09 5.6E-14 116.1 15.2 36 404-439 69-111 (318)
387 COG4917 EutP Ethanolamine util 99.0 8.6E-10 1.9E-14 97.3 9.0 130 326-518 3-136 (148)
388 cd01996 Alpha_ANH_like_III Thi 99.0 7.7E-10 1.7E-14 108.6 9.8 110 39-152 3-117 (154)
389 PF03054 tRNA_Me_trans: tRNA m 99.0 4.4E-10 9.5E-15 122.6 8.7 159 39-214 2-186 (356)
390 PLN00200 argininosuccinate syn 99.0 2.2E-09 4.8E-14 118.8 14.1 149 38-216 6-171 (404)
391 PRK09435 membrane ATPase/prote 99.0 3.3E-09 7.3E-14 115.2 13.6 104 401-521 146-253 (332)
392 cd01853 Toc34_like Toc34-like 99.0 6.5E-09 1.4E-13 109.3 15.1 121 320-478 27-163 (249)
393 KOG0088|consensus 99.0 9.9E-10 2.1E-14 100.4 7.6 154 323-521 12-168 (218)
394 cd04094 selB_III This family r 99.0 3.3E-09 7.2E-14 94.5 10.7 95 628-741 1-97 (97)
395 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 6.5E-09 1.4E-13 107.2 13.7 153 326-513 1-162 (232)
396 PRK01269 tRNA s(4)U8 sulfurtra 99.0 4E-09 8.7E-14 122.2 13.5 146 38-213 178-333 (482)
397 PRK01565 thiamine biosynthesis 98.9 5.8E-09 1.3E-13 117.7 13.3 145 38-213 177-332 (394)
398 PTZ00099 rab6; Provisional 98.9 3E-09 6.5E-14 106.5 9.8 104 403-519 28-133 (176)
399 KOG1532|consensus 98.9 2.9E-09 6.2E-14 107.0 9.3 195 322-520 17-256 (366)
400 KOG0081|consensus 98.9 6.6E-10 1.4E-14 101.6 4.4 152 324-519 9-172 (219)
401 PRK09601 GTP-binding protein Y 98.9 1.2E-08 2.5E-13 111.5 14.9 82 325-439 3-108 (364)
402 PRK13768 GTPase; Provisional 98.9 6.2E-09 1.3E-13 110.4 12.0 108 403-519 96-238 (253)
403 KOG0395|consensus 98.9 4E-09 8.7E-14 106.7 10.0 150 324-519 3-156 (196)
404 COG0482 TrmU Predicted tRNA(5- 98.9 8.7E-09 1.9E-13 110.3 13.0 167 38-217 4-187 (356)
405 COG5192 BMS1 GTP-binding prote 98.9 1.5E-08 3.3E-13 110.4 14.7 148 319-513 64-211 (1077)
406 TIGR03573 WbuX N-acetyl sugar 98.9 1.2E-08 2.6E-13 113.0 14.2 128 20-150 39-173 (343)
407 cd03688 eIF2_gamma_II eIF2_gam 98.9 1.1E-08 2.4E-13 89.5 10.3 90 545-634 2-112 (113)
408 PRK09602 translation-associate 98.9 1.9E-08 4E-13 113.0 14.8 35 404-438 72-113 (396)
409 PTZ00258 GTP-binding protein; 98.9 2.2E-08 4.7E-13 110.9 15.0 85 322-439 19-127 (390)
410 cd03692 mtIF2_IVc mtIF2_IVc: t 98.9 1.7E-08 3.6E-13 87.1 11.1 76 552-631 4-82 (84)
411 KOG0083|consensus 98.9 6.6E-10 1.4E-14 98.4 2.4 115 392-518 33-150 (192)
412 TIGR02836 spore_IV_A stage IV 98.9 2.2E-08 4.8E-13 108.1 14.1 163 320-511 13-218 (492)
413 TIGR00073 hypB hydrogenase acc 98.9 4.6E-09 1E-13 108.4 8.5 97 403-519 102-198 (207)
414 cd01986 Alpha_ANH_like Adenine 98.9 1.7E-08 3.7E-13 91.4 11.2 83 40-159 1-83 (103)
415 KOG0090|consensus 98.8 1.2E-08 2.6E-13 99.3 9.4 115 325-480 39-161 (238)
416 cd01900 YchF YchF subfamily. 98.8 2.4E-08 5.1E-13 105.9 12.3 80 327-439 1-104 (274)
417 PF03029 ATP_bind_1: Conserved 98.8 2.1E-09 4.5E-14 112.4 3.9 110 405-518 92-227 (238)
418 TIGR00991 3a0901s02IAP34 GTP-b 98.8 4E-08 8.8E-13 104.4 13.5 119 322-478 36-167 (313)
419 PF06508 QueC: Queuosine biosy 98.8 1.1E-08 2.5E-13 104.3 8.6 161 39-219 1-181 (209)
420 PF04548 AIG1: AIG1 family; I 98.8 6.1E-08 1.3E-12 100.3 14.1 144 325-511 1-163 (212)
421 KOG0071|consensus 98.8 3.4E-08 7.3E-13 88.9 10.3 149 324-518 17-168 (180)
422 KOG4252|consensus 98.8 1.9E-09 4.2E-14 100.7 2.4 152 322-520 18-173 (246)
423 PF05049 IIGP: Interferon-indu 98.8 2.4E-08 5.2E-13 109.0 11.2 148 322-514 33-202 (376)
424 PF00350 Dynamin_N: Dynamin fa 98.8 1.7E-08 3.7E-13 100.7 9.1 65 403-474 100-168 (168)
425 TIGR00750 lao LAO/AO transport 98.8 5.9E-08 1.3E-12 106.0 13.1 103 401-521 124-231 (300)
426 PTZ00323 NAD+ synthase; Provis 98.7 1.6E-07 3.5E-12 100.2 15.1 169 19-214 26-211 (294)
427 KOG0077|consensus 98.7 7.7E-08 1.7E-12 89.6 10.8 116 323-480 19-137 (193)
428 smart00053 DYNc Dynamin, GTPas 98.7 5E-08 1.1E-12 101.3 10.3 71 404-482 125-210 (240)
429 KOG0072|consensus 98.7 4.1E-08 8.9E-13 88.8 7.9 153 323-518 17-169 (182)
430 PF02540 NAD_synthase: NAD syn 98.7 2.4E-08 5.3E-13 104.4 7.4 162 26-219 5-174 (242)
431 PF03308 ArgK: ArgK protein; 98.7 1.1E-07 2.3E-12 97.4 10.9 173 322-521 27-223 (266)
432 KOG2840|consensus 98.7 1.2E-08 2.7E-13 105.3 4.1 173 33-214 47-232 (347)
433 PRK10463 hydrogenase nickel in 98.7 1.3E-08 2.8E-13 107.4 4.2 47 467-518 233-279 (290)
434 KOG2644|consensus 98.7 1.8E-08 3.8E-13 102.9 4.8 141 39-219 84-232 (282)
435 KOG1486|consensus 98.7 1.6E-07 3.4E-12 93.3 11.0 134 274-440 10-152 (364)
436 TIGR00101 ureG urease accessor 98.7 4.5E-08 9.8E-13 99.7 7.5 97 403-519 91-187 (199)
437 cd01994 Alpha_ANH_like_IV This 98.6 3E-07 6.6E-12 92.9 12.9 133 39-214 1-139 (194)
438 KOG2486|consensus 98.6 6.8E-08 1.5E-12 98.0 7.9 165 321-526 133-314 (320)
439 KOG1490|consensus 98.6 7.4E-08 1.6E-12 104.9 8.0 160 321-520 165-333 (620)
440 KOG0074|consensus 98.6 1.2E-07 2.6E-12 85.4 8.0 151 322-519 15-170 (185)
441 COG0378 HypB Ni2+-binding GTPa 98.6 3.1E-08 6.8E-13 96.1 4.6 94 404-518 97-191 (202)
442 TIGR00993 3a0901s04IAP86 chlor 98.6 6.5E-07 1.4E-11 102.5 15.5 119 322-478 116-250 (763)
443 cd01342 Translation_Factor_II_ 98.6 4.7E-07 1E-11 77.9 10.2 80 549-632 1-82 (83)
444 COG0603 Predicted PP-loop supe 98.5 1E-06 2.2E-11 88.3 12.9 161 38-219 3-184 (222)
445 COG0519 GuaA GMP synthase, PP- 98.5 7.9E-07 1.7E-11 90.0 11.9 179 19-219 4-189 (315)
446 PF02568 ThiI: Thiamine biosyn 98.5 2.9E-07 6.4E-12 91.9 8.7 144 38-213 4-161 (197)
447 PRK00876 nadE NAD synthetase; 98.5 1.4E-06 2.9E-11 94.5 14.5 83 20-104 13-98 (326)
448 COG0012 Predicted GTPase, prob 98.5 1.1E-06 2.3E-11 94.6 12.7 91 324-439 2-109 (372)
449 PRK02628 nadE NAD synthetase; 98.4 1.8E-06 3.9E-11 104.5 14.8 154 28-212 350-522 (679)
450 KOG2805|consensus 98.4 1.2E-06 2.6E-11 89.8 10.6 168 36-214 4-192 (377)
451 PF00735 Septin: Septin; Inte 98.4 4.2E-06 9.1E-11 89.8 15.5 144 324-500 4-176 (281)
452 KOG3886|consensus 98.4 7E-07 1.5E-11 87.9 8.4 152 324-513 4-164 (295)
453 PRK00768 nadE NAD synthetase; 98.4 2.2E-06 4.8E-11 89.8 12.3 167 19-214 18-200 (268)
454 COG2117 Predicted subunit of t 98.4 9.6E-07 2.1E-11 81.5 8.3 139 39-210 2-147 (198)
455 KOG1707|consensus 98.4 8E-07 1.7E-11 99.2 9.3 155 320-520 5-167 (625)
456 PF03144 GTP_EFTU_D2: Elongati 98.4 1.1E-06 2.3E-11 74.3 8.1 65 568-632 2-74 (74)
457 COG1703 ArgK Putative periplas 98.4 1.8E-06 4E-11 89.3 11.0 179 320-521 47-247 (323)
458 TIGR03679 arCOG00187 arCOG0018 98.4 3.4E-06 7.5E-11 87.1 12.6 131 41-214 1-137 (218)
459 KOG0393|consensus 98.4 4.5E-07 9.8E-12 89.6 5.5 154 323-519 3-170 (198)
460 PRK05370 argininosuccinate syn 98.4 4.6E-06 9.9E-11 91.9 13.5 151 37-216 11-184 (447)
461 COG5019 CDC3 Septin family pro 98.4 9.1E-06 2E-10 86.8 15.2 147 320-500 19-196 (373)
462 PF14578 GTP_EFTU_D4: Elongati 98.3 5.1E-06 1.1E-10 69.2 10.3 60 569-631 20-79 (81)
463 KOG0448|consensus 98.3 9E-06 2E-10 92.5 13.9 97 405-513 207-311 (749)
464 cd03690 Tet_II Tet_II: This su 98.2 8.8E-06 1.9E-10 70.4 9.3 81 546-633 1-85 (85)
465 KOG1547|consensus 98.2 2.1E-05 4.6E-10 78.0 12.6 143 323-500 45-218 (336)
466 PRK13981 NAD synthetase; Provi 98.2 1.6E-05 3.4E-10 94.6 13.9 163 19-212 260-433 (540)
467 KOG1673|consensus 98.2 1.1E-05 2.3E-10 74.3 9.4 159 320-520 16-178 (205)
468 PF00764 Arginosuc_synth: Argi 98.2 7E-06 1.5E-10 90.2 9.8 149 41-218 1-164 (388)
469 cd03699 lepA_II lepA_II: This 98.1 1.8E-05 3.9E-10 68.7 10.0 80 550-633 2-86 (86)
470 cd04088 EFG_mtEFG_II EFG_mtEFG 98.1 1.7E-05 3.7E-10 68.5 9.4 75 552-632 4-82 (83)
471 cd04092 mtEFG2_II_like mtEFG2_ 98.1 1.5E-05 3.3E-10 68.8 9.1 76 552-633 4-83 (83)
472 KOG1954|consensus 98.1 2E-05 4.3E-10 83.0 11.4 135 326-479 60-226 (532)
473 COG0171 NadE NAD synthase [Coe 98.1 3.7E-05 8.1E-10 80.6 13.6 172 19-219 5-190 (268)
474 KOG3883|consensus 98.1 6.8E-05 1.5E-09 69.1 13.2 154 320-518 5-165 (198)
475 cd01858 NGP_1 NGP-1. Autoanti 98.1 4.5E-06 9.7E-11 82.1 6.0 23 324-346 102-124 (157)
476 cd04178 Nucleostemin_like Nucl 98.1 3.8E-06 8.3E-11 83.3 5.5 57 322-413 115-171 (172)
477 cd01991 Asn_Synthase_B_C The C 98.1 2.6E-05 5.7E-10 84.3 11.9 119 29-150 7-129 (269)
478 KOG1487|consensus 98.0 1E-05 2.2E-10 81.2 7.1 87 321-440 56-149 (358)
479 PRK10416 signal recognition pa 98.0 6.3E-05 1.4E-09 82.2 13.7 96 402-520 195-302 (318)
480 KOG2655|consensus 98.0 7.8E-05 1.7E-09 80.6 13.9 147 320-500 17-192 (366)
481 cd01859 MJ1464 MJ1464. This f 98.0 2.5E-05 5.5E-10 76.7 9.1 78 425-519 10-87 (156)
482 cd03689 RF3_II RF3_II: this su 98.0 4.3E-05 9.3E-10 66.0 9.2 64 568-633 17-84 (85)
483 PF00448 SRP54: SRP54-type pro 98.0 9.7E-05 2.1E-09 75.0 13.2 94 402-519 82-182 (196)
484 KOG3905|consensus 98.0 0.00011 2.4E-09 76.2 13.3 53 462-518 221-280 (473)
485 TIGR00064 ftsY signal recognit 97.9 7.8E-05 1.7E-09 79.8 12.4 95 402-519 153-259 (272)
486 cd01856 YlqF YlqF. Proteins o 97.9 2.5E-05 5.5E-10 77.9 8.1 91 411-520 2-93 (171)
487 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 9.2E-06 2E-10 78.3 4.6 21 326-346 85-105 (141)
488 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 4.3E-05 9.3E-10 73.6 9.1 80 419-515 3-84 (141)
489 cd03691 BipA_TypA_II BipA_TypA 97.9 8.4E-05 1.8E-09 64.7 10.1 78 549-632 1-85 (86)
490 PRK14974 cell division protein 97.9 9.3E-05 2E-09 81.1 12.7 94 402-519 221-321 (336)
491 KOG0096|consensus 97.9 2E-05 4.4E-10 75.5 6.5 149 322-519 8-160 (216)
492 TIGR01425 SRP54_euk signal rec 97.9 5.8E-05 1.2E-09 84.8 11.1 94 402-519 181-281 (429)
493 cd04091 mtEFG1_II_like mtEFG1_ 97.9 7.5E-05 1.6E-09 64.1 9.3 62 568-632 15-80 (81)
494 COG3640 CooC CO dehydrogenase 97.9 6.7E-05 1.4E-09 75.2 9.5 66 402-477 132-198 (255)
495 COG0137 ArgG Argininosuccinate 97.9 0.00019 4.1E-09 77.0 13.4 152 38-218 5-171 (403)
496 PF03193 DUF258: Protein of un 97.9 2.1E-05 4.6E-10 75.9 5.8 23 325-347 36-58 (161)
497 cd01858 NGP_1 NGP-1. Autoanti 97.9 3.7E-05 8.1E-10 75.6 7.6 84 421-519 2-86 (157)
498 TIGR03596 GTPase_YlqF ribosome 97.9 4.1E-05 8.8E-10 82.7 8.4 89 412-519 5-94 (276)
499 cd01849 YlqF_related_GTPase Yl 97.8 1.9E-05 4.1E-10 77.5 5.3 24 323-346 99-122 (155)
500 PRK11889 flhF flagellar biosyn 97.8 0.0001 2.2E-09 80.7 10.9 93 403-518 320-418 (436)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-83 Score=676.23 Aligned_cols=417 Identities=33% Similarity=0.505 Sum_probs=400.9
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+|++++||+|||||||+++|++++|.++.+.++++++.+...|+ ++|.++|+||++++||+||+|++.++..|
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK--~sf~fawvlD~tkeERerGvTi~~~~~~f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGK--ESFKFAWVLDKTKEERERGVTIDVAHSKF 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCC--CceEEEEEecCChhHHhcceEEEEEEEEe
Confidence 4578999999999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
+++.+.++|+|||||+||+++|+.++++||++||||||..++||++++..+||+||+.+++.+|+.++||++||||+++|
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~w 160 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEee
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~ 557 (967)
++++|+++++++..+++.+|+. +++|||+||++|+|+.+.++.++||+||||+++|+.+..|++..++||++||++++
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~ 240 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVY 240 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEE
Confidence 9999999999999999999986 68999999999999999999999999999999999999999989999999999999
Q ss_pred cCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCC
Q psy3751 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPF 635 (967)
Q Consensus 558 ~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~ 635 (967)
.+.+.| +++.|||++|.|++||+|++.|.+....|+||++++.++++|.|||+|++++++ ..||+|||++++++
T Consensus 241 ~i~~~g----tv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 241 SISGIG----TVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred EecCCc----eEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 988887 999999999999999999999999999999999999999999999999999996 56899999999999
Q ss_pred CCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecCcee
Q psy3751 636 KRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPIS 712 (967)
Q Consensus 636 ~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~pi~ 712 (967)
+++..+.+|.|++.++.+ .+|.+||++++|+|+.+++|++.+|..++|+.+++.. +|.+++.|+.+.|++++.+|+|
T Consensus 317 n~~t~s~~f~a~i~vl~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~ 396 (428)
T COG5256 317 NPPTVSPEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLC 396 (428)
T ss_pred CCcccccceEEEEEEEecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceE
Confidence 999999999999999987 8899999999999999999999999999999877653 7999999999999999999999
Q ss_pred eccccCccCCccceeecccccccceEEEEEec
Q psy3751 713 VDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 713 ~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
++.+++++.+|||+||| .++|++.|.++.+
T Consensus 397 ~e~~~~~~~Lgrfalrd--~g~tIA~G~v~~v 426 (428)
T COG5256 397 LEKVSEIPQLGRFALRD--MGQTIAAGKVLEV 426 (428)
T ss_pred eeecccCCccceEEEEe--CCCeEEeEEEEec
Confidence 99999999999999998 4779999888754
No 2
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-80 Score=629.03 Aligned_cols=413 Identities=51% Similarity=0.811 Sum_probs=401.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+.+..++++.||++|.||||||++|++++..+.++++..+.+++.+.|+.|+.+|++.++|-++.|||.|||||+.|++|
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
.++.++|.+.|||||++|.+||.+|++.||++|++|||.. |+..||++|..++..+|++|+|+++||||++++
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-------Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy 154 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-------GVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDY 154 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-------hhHHHhHHHHHHHHHhCCcEEEEEEeeeccccc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeecC
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARH 559 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~~ 559 (967)
++++|++|..++..|.+++++....+||+||+.|+|+...+++||||+|++|++.|+.+........+||||||+.|.+.
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp 234 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRP 234 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhccccccccccceeeceEEecCC
Confidence 99999999999999999999998899999999999999999999999999999999999888888889999999999987
Q ss_pred CCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEccccCCCCCcccccCCCCcc
Q psy3751 560 CGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGNMLVSPFKRPV 639 (967)
Q Consensus 560 ~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~~~~ 639 (967)
. ..|+.+.|+|.+|++++||+|.++|+|+..+|++|..+++++++|.+|+.|++.|.+..|++|||+|+.++.+|.
T Consensus 235 ~----~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~ 310 (431)
T COG2895 235 N----LDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLADEIDISRGDLIVAADAPPA 310 (431)
T ss_pred C----CcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEcceeecccCcEEEccCCCcc
Confidence 6 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEEEeccccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCc
Q psy3751 640 SLRSINANLCWLSEESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNI 719 (967)
Q Consensus 640 ~~~~f~a~i~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~ 719 (967)
+++.|.|.|+||.+.|+.+|++|.+.+++..+.++|..|.+++|.+|++...++.|..|+.+.|++.+++|+++++|.+|
T Consensus 311 ~~~~f~A~vvWm~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~fd~Y~~N 390 (431)
T COG2895 311 VADAFDADVVWMDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAFDAYAEN 390 (431)
T ss_pred hhhhcceeEEEecCCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCceeecccccC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cCCccceeecccccccceEEEEEe
Q psy3751 720 RSTGSFILIDEITFQTVAAVYIIG 743 (967)
Q Consensus 720 ~~~grfil~d~~~~~~~~~~~~vg 743 (967)
+.+|+|||+|+.++.|+|.|.|..
T Consensus 391 ~atG~FIlID~~tn~TVgaGmI~~ 414 (431)
T COG2895 391 RATGSFILIDRLTNGTVGAGMILA 414 (431)
T ss_pred cccccEEEEEcCCCCceeceeeec
Confidence 999999999999999999888764
No 3
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=4.4e-72 Score=634.41 Aligned_cols=418 Identities=29% Similarity=0.473 Sum_probs=391.3
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.++.+||+++||+|||||||+++|++.+|.++.+.++++.+++...++ .+++++|++|..++|+++|+|+++++..|+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~--~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK--RSFKYAWVLDKLKAERERGITIDIALWKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcc--cchhhhhhhcCCHhHHhcCceEEEEEEEec
Confidence 468899999999999999999999999999999999888887776666 689999999999999999999999999999
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc--C
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI--N 478 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~--~ 478 (967)
++++.++|+|||||++|+++|+.+++.+|++|+|||+.++.|+..+.+.+||++|+.++..+|++++|||+||||+. +
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchh
Confidence 99999999999999999999999999999999999999988888888889999999999999999999999999987 5
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEe
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLV 556 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v 556 (967)
+++.+|+++.++++.++++.|++ +++|+|+||++|+|+.+.++.++||+|++|++.|++++.|.+..++||+|+|+++
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v 241 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDV 241 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEE
Confidence 67889999999999999999875 6799999999999999999999999999999999999888888899999999999
Q ss_pred ecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccC
Q psy3751 557 ARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSP 634 (967)
Q Consensus 557 ~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~ 634 (967)
|+..+.| ++++|+|++|.+++||+|.++|++..++|++|++++.++++|.|||+|+++|++ ..+++|||||+++
T Consensus 242 ~~~~g~G----~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 242 YKIGGIG----TVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred EEeCCcE----EEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 9998887 899999999999999999999999999999999999999999999999999986 3689999999996
Q ss_pred -CCCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecCc
Q psy3751 635 -FKRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEP 710 (967)
Q Consensus 635 -~~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~p 710 (967)
+.|+..+++|+|+|+||++ .++..||++++|+|+.+++|+|.+|.+++|.++++.. +|++|++||.|.|+|++.+|
T Consensus 318 ~~~p~~~~~~F~A~i~~l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~p 397 (447)
T PLN00043 318 KDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKP 397 (447)
T ss_pred CCCCCccccEEEEEEEEECCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCc
Confidence 4667889999999999997 7899999999999999999999999999999888654 58999999999999999999
Q ss_pred eeeccccCccCCccceeecccccccceEEEEEecCC
Q psy3751 711 ISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 711 i~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
+|+|+|++++.+|||+||| ++.|+|.|.+..+-+
T Consensus 398 i~~e~~~~~~~lGrf~lrd--~~~Tva~G~v~~v~~ 431 (447)
T PLN00043 398 MVVETFSEYPPLGRFAVRD--MRQTVAVGVIKSVEK 431 (447)
T ss_pred EEEEecccCCCCceEEEEE--CCCeEEEEEEEEEec
Confidence 9999999999999999998 588999998877654
No 4
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1e-70 Score=624.20 Aligned_cols=418 Identities=30% Similarity=0.491 Sum_probs=390.5
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+++|+..+|.++.+.++++.+++...|+ ++++|+|++|..++|+++|+|+++++..+
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~--~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGK--GSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCC--cchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 3467899999999999999999999999999999999999999988887 67889999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC--cc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD--LI 477 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D--~~ 477 (967)
+++++.++|+|||||++|+++|+.+++.+|++|||||+.++.||.++...+||++|+.++..+|++++|||+|||| .+
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 9999999999999999999999999999999999999999777766666799999999999999999999999999 66
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEE
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQL 555 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~ 555 (967)
+|++.+|+++.++++.+++.+++. ++++||+||++|+|+.+.+..++||+|++|++.|+++++|.+..++||+|+|++
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~ 240 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQD 240 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEE
Confidence 788999999999999999998884 689999999999999999999999999999999999988888788999999999
Q ss_pred eecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccccc
Q psy3751 556 VARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVS 633 (967)
Q Consensus 556 v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~ 633 (967)
+|+..+.| ++++|+|.+|+|++||+|.+.|++..++|++|++++.++++|.|||+|+++|++ ..+++|||+|++
T Consensus 241 v~~v~g~G----tvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~ 316 (446)
T PTZ00141 241 VYKIGGIG----TVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASD 316 (446)
T ss_pred EEecCCce----EEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEec
Confidence 99999887 999999999999999999999999999999999999999999999999999986 567999999999
Q ss_pred CC-CCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecC
Q psy3751 634 PF-KRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYE 709 (967)
Q Consensus 634 ~~-~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~ 709 (967)
+. .|+..+++|+|+|.||++ .+|++||++++|+|+.+++|+|..|.+++|.++++.. +|++|++|+.+.|+|++++
T Consensus 317 ~~~~p~~~~~~f~a~i~~l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~ 396 (446)
T PTZ00141 317 SKNDPAKECADFTAQVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTK 396 (446)
T ss_pred CCCCCCccceEEEEEEEEECCCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECC
Confidence 74 566789999999999997 6899999999999999999999999999999887643 6899999999999999999
Q ss_pred ceeeccccCccCCccceeecccccccceEEEEEecC
Q psy3751 710 PISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGAG 745 (967)
Q Consensus 710 pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g 745 (967)
|+++++|++++.+|||+|||. +.|+|.|.+..+-
T Consensus 397 pi~~e~~~~~~~lgrfilrd~--g~tva~G~I~~v~ 430 (446)
T PTZ00141 397 PMCVEVFNEYPPLGRFAVRDM--KQTVAVGVIKSVE 430 (446)
T ss_pred ceEEeecccCCCCccEEEEEC--CCEEEEEEEEEEe
Confidence 999999999999999999984 6899998887654
No 5
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.3e-69 Score=619.91 Aligned_cols=414 Identities=47% Similarity=0.768 Sum_probs=387.5
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+.++.+||+++||+|||||||+++|++.+|.++.+++.++.+++...|+++++++++|++|+.++|++||+|++.++..+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 45678999999999999999999999999999999999999999999998789999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++++.+++|+|||||++|.+++..++..+|++|+|||+.+ |+..||++|+.++..++++++|||+||||++++
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~-------G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARK-------GVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDY 175 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC-------CccccchHHHHHHHHhCCCceEEEEEeeccccc
Confidence 9999999999999999999999999999999999999999 899999999999999999889999999999987
Q ss_pred CHHHHHHHHHHHHHHHHHcC-CccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeec
Q psy3751 480 NQIFYKRIVYAYKKFAEDIH-FQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVAR 558 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~-~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~ 558 (967)
+++.++++.+++..+++.++ ....++||+||++|+|++++.+.++||+|++|+++|+.++.+.+..++||+|+|+++++
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~ 255 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNR 255 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEe
Confidence 78888889998988888777 44679999999999999999999999999999999999988877788999999999987
Q ss_pred CCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEccccCCCCCcccccCCCCc
Q psy3751 559 HCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGNMLVSPFKRP 638 (967)
Q Consensus 559 ~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~~~ 638 (967)
..... ..+.|+|.+|+|++||+|.++|.++.++|++|++++.++++|.|||+|+++|++..+++|||+|++++.++
T Consensus 256 ~~~~~----~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~~~~~ 331 (474)
T PRK05124 256 PNLDF----RGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLEDEIDISRGDLLVAADEAL 331 (474)
T ss_pred cCCcc----cceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCCccccCCccEEECCCCCC
Confidence 54322 35789999999999999999999999999999999999999999999999999877899999999987778
Q ss_pred cccceeEEEEEEeccccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccC
Q psy3751 639 VSLRSINANLCWLSEESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDN 718 (967)
Q Consensus 639 ~~~~~f~a~i~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~ 718 (967)
..++.|+|++.||+..+|++|+++++|+|+.+++|+|..|.+++|.+|++..++.+|++|+.+.|+|++++|+|+++|++
T Consensus 332 ~~~~~f~a~i~~l~~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv~~e~~~~ 411 (474)
T PRK05124 332 QAVQHASADVVWMAEQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEPLVLDPYQQ 411 (474)
T ss_pred ccceEEEEEEEEeCCcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCeeccccCCc
Confidence 88999999999999888999999999999999999999999999999998778899999999999999999999999999
Q ss_pred ccCCccceeecccccccceEEEEEec
Q psy3751 719 IRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 719 ~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
++.+|||+|||+.++.|+|.|.|...
T Consensus 412 ~~~lGRfil~dr~~~~tva~G~V~~~ 437 (474)
T PRK05124 412 NRVTGGFIFIDRLTNVTVGAGMVREP 437 (474)
T ss_pred CCcceeEEEEECCCCceEEEEEEecc
Confidence 99999999999989999999988653
No 6
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=4.2e-69 Score=608.04 Aligned_cols=406 Identities=50% Similarity=0.798 Sum_probs=383.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
+||+++||+|||||||+++|++.+|.++.+++.++.+++...|+++.+|.|+|++|+.++|+++|+|++.++..++++++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 47999999999999999999999999999999999999999998777899999999999999999999999999999999
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHH
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFY 484 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~ 484 (967)
+++|+|||||++|.++|..++..+|++|+|||+.+ |+++||++|+.++..++++++|||+||||+++++++++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~-------G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~ 153 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARK-------GVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVF 153 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC-------CCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHH
Confidence 99999999999999999999999999999999999 89999999999999999988999999999998778888
Q ss_pred HHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeecCCCccC
Q psy3751 485 KRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHIS 564 (967)
Q Consensus 485 ~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 564 (967)
+++.+++..+++.+++.+++++|+||++|+|++++++.++||.|++|+++|+.++.+.+..++||+++|+++++....+
T Consensus 154 ~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~- 232 (406)
T TIGR02034 154 ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDF- 232 (406)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCc-
Confidence 8899999999988888778999999999999999999999999999999999998888778899999999998764332
Q ss_pred CCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEccccCCCCCcccccCCCCcccccee
Q psy3751 565 KDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGNMLVSPFKRPVSLRSI 644 (967)
Q Consensus 565 ~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~~~~~~~~f 644 (967)
..++|+|.+|+|++||+|.++|.+..++|++|++++.++++|.|||+|++++++..+++|||+|++++.++..++.|
T Consensus 233 ---~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~~~~~~~~~f 309 (406)
T TIGR02034 233 ---RGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDDEIDISRGDLLAAADSAPEVADQF 309 (406)
T ss_pred ---EEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECCccccCCccEEEcCCCCCCcceEE
Confidence 45789999999999999999999999999999999999999999999999999877899999999998878889999
Q ss_pred EEEEEEeccccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCccCCcc
Q psy3751 645 NANLCWLSEESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGS 724 (967)
Q Consensus 645 ~a~i~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~~gr 724 (967)
+|++.|+++.+|++|+++++|+|+.+++|+|..|..++|.+|++..++..+++|+.+.|+|++++|+|+++|++++.+||
T Consensus 310 ~a~i~~l~~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~~~lGr 389 (406)
T TIGR02034 310 AATLVWMAEEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYAENRTTGA 389 (406)
T ss_pred EEEEEEeChhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcccCCCccee
Confidence 99999999889999999999999999999999999999999998778899999999999999999999999999999999
Q ss_pred ceeecccccccceEEEE
Q psy3751 725 FILIDEITFQTVAAVYI 741 (967)
Q Consensus 725 fil~d~~~~~~~~~~~~ 741 (967)
|+|+|+.+++|+|.|.+
T Consensus 390 ~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 390 FILIDRLSNRTVGAGMI 406 (406)
T ss_pred EEEEECCCCCeEEEEeC
Confidence 99998888999987753
No 7
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=3.2e-67 Score=600.86 Aligned_cols=413 Identities=32% Similarity=0.534 Sum_probs=385.1
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.++.+||+++||+|||||||+|+|++..|.++.+.++++.+++...|+ .+++++|++|++++|+++|+|++..+..++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGK--ESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCC--cccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 467899999999999999999999999999999999999999998887 578899999999999999999999999999
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
+++.+++|||||||++|.++++.+++.+|++|+|||+++. .++..|+++|+.++..++++++|+|+||||+.+++
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~-----~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA-----GGVMPQTREHVFLARTLGINQLIVAINKMDAVNYD 155 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC-----CCCCcchHHHHHHHHHcCCCeEEEEEEcccccccc
Confidence 9999999999999999999999999999999999999862 36778999999999999988899999999999877
Q ss_pred HHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeec
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVAR 558 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~ 558 (967)
+++++.+.+++..+++.+++. +++++|+||++|.|++++++.++||+|++|+++|+.++.+++..++||+|+|+++|+
T Consensus 156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~ 235 (425)
T PRK12317 156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYS 235 (425)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEe
Confidence 778888889999999888874 578999999999999999999999999999999999988888788999999999999
Q ss_pred CCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCCC
Q psy3751 559 HCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPFK 636 (967)
Q Consensus 559 ~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~~ 636 (967)
..+.| ++++|+|++|+|++||+|.++|.+..++|++|++++.++++|.|||+|++++++ ..++++||+|++++.
T Consensus 236 ~~g~G----~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 236 ISGVG----TVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred eCCCe----EEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCC
Confidence 99888 899999999999999999999999999999999999999999999999999985 457999999999877
Q ss_pred CccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecCceee
Q psy3751 637 RPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPISV 713 (967)
Q Consensus 637 ~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~pi~~ 713 (967)
++..+++|+|+|.||++ .++++|+++++|+|+.+++|+|..|.+++|.++++.. +|++|++||.|.|+|++.+|+|+
T Consensus 312 ~~~~~~~f~a~v~~l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~ 391 (425)
T PRK12317 312 PPTVAEEFTAQIVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVI 391 (425)
T ss_pred CCCcccEEEEEEEEECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEE
Confidence 78889999999999987 7999999999999999999999999999999888643 68999999999999999999999
Q ss_pred ccccCccCCccceeecccccccceEEEEEecCC
Q psy3751 714 DSYDNIRSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 714 ~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
++|++++.+|||+||| .+.|+|.|.+..+-|
T Consensus 392 ~~~~~~~~lgrfilr~--~g~tv~~G~i~~v~~ 422 (425)
T PRK12317 392 EKVKEIPQLGRFAIRD--MGQTIAAGMVIDVKP 422 (425)
T ss_pred EeCCcCCCCccEEEEE--CCCeEEEEEEEEecc
Confidence 9999999999999998 478999999887754
No 8
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=1e-66 Score=596.16 Aligned_cols=415 Identities=31% Similarity=0.508 Sum_probs=385.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+++|++.+|.++.+.++++.+++...|+ .++.|+|++|++++|+++|+|++..+..+
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~--~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGK--ASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCC--cccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 3567899999999999999999999999999999999999999988887 67999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
.+++..++|||||||++|.+++..++..+|++|+|||+++++| ....|+.+|+.++..++++++|||+||+|++++
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~----~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF----EVQPQTREHAFLARTLGINQLIVAINKMDSVNY 156 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc----ccCCchHHHHHHHHHcCCCeEEEEEEChhccCc
Confidence 9999999999999999999999999999999999999999443 267889999988888998889999999999987
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEee
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~ 557 (967)
+++.++++.++++.+++..++. .++++|+||++|.|+.++...++||.|++|++.|++++++++..++||+|+|+++|
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~ 236 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVY 236 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCCCCCCccCCCcEEEEEEEE
Confidence 7888888999999999988863 47899999999999999999999999999999999998888778899999999999
Q ss_pred cCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCC
Q psy3751 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPF 635 (967)
Q Consensus 558 ~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~ 635 (967)
+..|.| ++++|+|.+|+|++||+|.+.|.+..++|++|++++.++++|.|||+|+++|++ ..++++||+|++++
T Consensus 237 ~~~g~G----~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~ 312 (426)
T TIGR00483 237 SITGVG----TVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPD 312 (426)
T ss_pred ecCCCe----EEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCC
Confidence 999888 899999999999999999999999999999999999999999999999999985 46899999999987
Q ss_pred CCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecCcee
Q psy3751 636 KRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPIS 712 (967)
Q Consensus 636 ~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~pi~ 712 (967)
.++..+++|+|+|.||++ .+++.|+++++|+|+.+++|+|..|.+++|.++++.. +|.+|++|+.+.|+|+|++|+|
T Consensus 313 ~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~ 392 (426)
T TIGR00483 313 NPPKVAKEFTAQIVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMV 392 (426)
T ss_pred CCCceeeEEEEEEEEECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeE
Confidence 788889999999999987 7999999999999999999999999999999887644 6899999999999999999999
Q ss_pred eccccCccCCccceeecccccccceEEEEEecCC
Q psy3751 713 VDSYDNIRSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 713 ~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
+++|++++.+|||+||| .+.|+|.|.++.+.|
T Consensus 393 ~e~~~~~~~~grf~lr~--~g~tv~~G~v~~~~~ 424 (426)
T TIGR00483 393 IEAVKEIPPLGRFAIRD--MGQTVAAGMIIDVDP 424 (426)
T ss_pred EeecccCCCCccEEEEE--CCCEEEEEEEEEeee
Confidence 99999999999999998 478999998887654
No 9
>KOG0458|consensus
Probab=100.00 E-value=7.8e-67 Score=567.00 Aligned_cols=418 Identities=27% Similarity=0.419 Sum_probs=393.1
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..+..++++++||+|+|||||+++|++++|.++.+.|.++++++...|+ .+|.|+|++|.+.+||+||+|.++....|
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk--~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGK--SSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCC--cceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 4458899999999999999999999999999999999999999999999 67999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
+...+.++|+|+|||.+|+.+|+.++.+||+++||||++.++||.++...+||+||+.+++.+|+.++||++||||+++|
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-HHcCCc--cceEEeccccCCCccccccc---CCCCCCCCcHHHHhhcccCCCcCCCCCceeeE
Q psy3751 480 NQIFYKRIVYAYKKFA-EDIHFQ--NINTIPISALNGDNIISASN---NMLWYNGPTLISLLESLNTNEKIDKKPLRFPV 553 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~-~~~~~~--~~~ii~iSa~~g~gi~~l~~---~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i 553 (967)
+++||++|++.+..|+ +.+|+. ++.|||+|+++|+|+..... ...||+|++|++.++++..|.+...+||+++|
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltI 410 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTI 410 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEh
Confidence 9999999999999999 788986 56899999999999987632 34699999999999999888888889999999
Q ss_pred EEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccc
Q psy3751 554 QLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNML 631 (967)
Q Consensus 554 ~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl 631 (967)
.++++.+..+ ..++|+|++|.|+.||+|+++|+...++|++|.+.+++...|.|||.|.+.|.+ ...+..|+++
T Consensus 411 sdi~~~~~~~----~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~ 486 (603)
T KOG0458|consen 411 SDIYPLPSSG----VSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIA 486 (603)
T ss_pred hheeecCCCe----eEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceee
Confidence 9999988776 678999999999999999999999999999999999999999999999999986 5679999999
Q ss_pred c-cCCCCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEee
Q psy3751 632 V-SPFKRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINI 707 (967)
Q Consensus 632 ~-~~~~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l 707 (967)
+ .+..+...+..|.+++.||+. .|+..|.++.+|+|+..++|++.++...+|+.|++.. .|++|..|+.|.++++.
T Consensus 487 ~~~~~~~i~~~~~f~~~~~~f~~~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~ 566 (603)
T KOG0458|consen 487 DSGPQFPISKTTRFVARITTFDINLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELET 566 (603)
T ss_pred ecCCCccccceeEEEEEEEEeeccccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeeccc
Confidence 9 677888888999999999997 7999999999999999999999999998998888754 58999999999999999
Q ss_pred cCceeeccccCccCCccceeecccccccceEEEEEecC
Q psy3751 708 YEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGAG 745 (967)
Q Consensus 708 ~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g 745 (967)
+.|||++.|.+++.+|||+||. .+.|++.|.+..++
T Consensus 567 ~~pI~~etf~~~~~lgr~vlr~--~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 567 ERPICLETFAENRALGRVVLRK--SGSTIAAGKVTEII 602 (603)
T ss_pred cCchhhhhhhhchhheeEEEec--cCceeeeeeEEeec
Confidence 9999999999999999999975 79999999887653
No 10
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=1.1e-65 Score=613.26 Aligned_cols=416 Identities=51% Similarity=0.798 Sum_probs=390.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+|+|++.++.++.+.+.++.+++...|+++++++++|++|.+++|+++|+|++.++..+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++++.+++|+|||||++|.++|..++..+|+++||||+.+ |+.+|+++|+.++..++++++|||+||||++++
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~-------g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARK-------GVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDY 172 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-------CccccCHHHHHHHHHhCCCeEEEEEEecccccc
Confidence 9999999999999999999999999999999999999998 889999999999999999889999999999987
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeecC
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARH 559 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~~ 559 (967)
++++++++.+++..+++.+++++++++|+||++|.|++++.+.++||.|++|+++|+.++.+.+..++||++||+++++.
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~ 252 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNRP 252 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCCCCCcCCCCceeeEEEEEec
Confidence 77888889899999999999887889999999999999999999999999999999999877777789999999999875
Q ss_pred CCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEccccCCCCCcccccCCCCcc
Q psy3751 560 CGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGNMLVSPFKRPV 639 (967)
Q Consensus 560 ~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~~~~ 639 (967)
.... +++.|+|++|+|++||+|.++|.+++++|++|++++.++++|.|||+|++++++..+++|||+|++++.++.
T Consensus 253 ~~~~----~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~~~~~ 328 (632)
T PRK05506 253 NLDF----RGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLADEIDISRGDMLARADNRPE 328 (632)
T ss_pred CCCc----eEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecCccccCCccEEecCCCCCc
Confidence 4222 457899999999999999999999999999999999999999999999999997778999999999987888
Q ss_pred ccceeEEEEEEeccccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCc
Q psy3751 640 SLRSINANLCWLSEESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNI 719 (967)
Q Consensus 640 ~~~~f~a~i~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~ 719 (967)
.+++|+|++.||+..++.+|+++++|+|+.+++|+|..|.+++|.+|++..+|.+|++|+.+.|+|++++|+|+++|+++
T Consensus 329 ~~~~f~a~i~~l~~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e~~~~~ 408 (632)
T PRK05506 329 VADQFDATVVWMAEEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFDPYARN 408 (632)
T ss_pred ceeEEEEEEEEecccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeeeecccc
Confidence 89999999999998888999999999999999999999999999999887789999999999999999999999999999
Q ss_pred cCCccceeecccccccceEEEEEecCC
Q psy3751 720 RSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 720 ~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
+.+|||+|||+.++.|+|.|.|+..-+
T Consensus 409 ~~lGRfilrdr~~~~Tva~G~I~~~~~ 435 (632)
T PRK05506 409 RTTGSFILIDRLTNATVGAGMIDFALR 435 (632)
T ss_pred ccCceEEEEeccCCceEEEEEECcccc
Confidence 999999999998999999999877655
No 11
>KOG0459|consensus
Probab=100.00 E-value=4.5e-63 Score=510.99 Aligned_cols=414 Identities=28% Similarity=0.423 Sum_probs=390.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..+.++|++++||+++||||+-+.+++..|.++.+.++++.+.++..++ +++.++|.+|+..+||+.|-|+.++..+|
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~r--EswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNR--ESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhcc--ccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 3578899999999999999999999999999999999999999999887 89999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC--cc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD--LI 477 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D--~~ 477 (967)
++..++++++|+|||..|+.+|+.++++||+++||+.|..++|+.++.-.+||++|..+++.+|++++|+++|||| .+
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 46
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCc---cceEEeccccCCCccccccc-CCCCCCCCcHHHHhhcccCCCcCCCCCceeeE
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQ---NINTIPISALNGDNIISASN-NMLWYNGPTLISLLESLNTNEKIDKKPLRFPV 553 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~---~~~ii~iSa~~g~gi~~l~~-~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i 553 (967)
+|++++|+++++.+..++..+|+. +..++|+|+.+|.|+.+..+ .++||.|+++++.++.++..++..+.||++||
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPV 312 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhccCcccccCCCCEEeeh
Confidence 899999999999999999988873 77899999999999999874 78999999999999999988999999999999
Q ss_pred EEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccc
Q psy3751 554 QLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNML 631 (967)
Q Consensus 554 ~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl 631 (967)
.+-++..| |++.|+|+||.++.||.+.++|+++.+.|.+|......++.+.||+++-|.|++ ..+|..|.||
T Consensus 313 ~~KykdmG------Tvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL 386 (501)
T KOG0459|consen 313 ANKYKDMG------TVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFIL 386 (501)
T ss_pred hhhccccc------eEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEE
Confidence 88887664 799999999999999999999999999999999998899999999999999996 5789999999
Q ss_pred ccCCCCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeec
Q psy3751 632 VSPFKRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIY 708 (967)
Q Consensus 632 ~~~~~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~ 708 (967)
|+++++..+.+.|.|+|.++.+ .-|.+||++++|+|+..-.|.| .++..+|.+|++.. .|.++++|+.+.++|+..
T Consensus 387 ~~~~n~~~s~~~F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~ 465 (501)
T KOG0459|consen 387 CSPNNPCKSGRTFDAQIVILEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETE 465 (501)
T ss_pred ecCCCccccccEEEEEEEEEecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecC
Confidence 9999999999999999999998 5678999999999999999999 56689999988765 689999999999999999
Q ss_pred CceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 709 EPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 709 ~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
.|+|++.|.++|++|||.||| .+.|++.|.++-+
T Consensus 466 ~~iCle~fkd~pqmgRFtLRd--egkTIAiGkV~kv 499 (501)
T KOG0459|consen 466 GPICLETFKDYPQMGRFTLRD--EGKTIAIGKVLKV 499 (501)
T ss_pred CcEehhhcccchhhcceEEec--CCcEEEEEEEEee
Confidence 999999999999999999999 5899988887654
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=4.5e-58 Score=520.87 Aligned_cols=382 Identities=23% Similarity=0.316 Sum_probs=333.1
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
...++.+||+++||+|||||||+++|++.++.+..+..+ -...+|++++|+++|+|++.....
T Consensus 76 ~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~-----------------~~~~~D~~~~Er~rGiTi~~~~~~ 138 (478)
T PLN03126 76 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPK-----------------KYDEIDAAPEERARGITINTATVE 138 (478)
T ss_pred hccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhcccccc-----------------ccccccCChhHHhCCeeEEEEEEE
Confidence 356789999999999999999999999877655322111 112589999999999999999999
Q ss_pred eecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC
Q psy3751 399 FNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 399 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~ 478 (967)
+++++++++|||||||++|+++|+.++..+|++++|||+.+ |+.+||++|+.++..+|++++||++||||+++
T Consensus 139 ~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~-------G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 139 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-------GPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 99999999999999999999999999999999999999999 89999999999999999998999999999986
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCccccc-----ccCCCCCC-CCcHHHHhhcc-cCCCcCCCCCc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISA-----SNNMLWYN-GPTLISLLESL-NTNEKIDKKPL 549 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l-----~~~~~w~~-~~~L~~~l~~~-~~~~~~~~~~~ 549 (967)
.++.++.+.++++.+++.++++ +++++|+||++|.|+... ....+||+ .++|++.++++ +.|.+..++||
T Consensus 212 -~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~ 290 (478)
T PLN03126 212 -DEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPF 290 (478)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccce
Confidence 4556788888999999998874 789999999999876421 12348997 46788888875 45666678999
Q ss_pred eeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEeCccccceeecCCeEEEEEcc--ccCC
Q psy3751 550 RFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG--KKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDI 625 (967)
Q Consensus 550 ~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~--~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i 625 (967)
+|+|+++|++.+.| +|++|+|++|.+++||+|.++|.+ +.++|++|+.++.++++|.|||+|+++|++ ..++
T Consensus 291 r~~I~~vf~v~g~G----tVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di 366 (478)
T PLN03126 291 LLAVEDVFSITGRG----TVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADI 366 (478)
T ss_pred eeEEEEEEEeCCce----EEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHc
Confidence 99999999999888 899999999999999999999975 578999999999999999999999999985 5679
Q ss_pred CCCcccccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCC
Q psy3751 626 SRGNMLVSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLND 699 (967)
Q Consensus 626 ~~G~vl~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~ 699 (967)
+|||+|++++ .+.+++.|+|++.||++ .+|.+|+++++|+|+.+++|+|..|....| .+++.+++||
T Consensus 367 ~rG~VL~~~~-~~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~------~~~~~l~~gd 439 (478)
T PLN03126 367 QRGMVLAKPG-SITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD------EESKMVMPGD 439 (478)
T ss_pred CCccEEecCC-CCCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC------CCccEeCCCC
Confidence 9999999985 45678999999999996 489999999999999999999999965433 2478899999
Q ss_pred EEEEEEeecCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 700 IGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 700 ~a~v~l~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
.+.|+|++.+|+|+++ ++||+||+ .++|+|.|.|..+
T Consensus 440 ~a~v~l~~~~Pi~~~~------~~RfilR~--~~~Tva~G~V~~v 476 (478)
T PLN03126 440 RVKMVVELIVPVACEQ------GMRFAIRE--GGKTVGAGVIQSI 476 (478)
T ss_pred EEEEEEEECCeEEEcc------CCEEEEec--CCceEEEEEEEEe
Confidence 9999999999999988 78999998 4799998887653
No 13
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=8.3e-57 Score=509.19 Aligned_cols=381 Identities=23% Similarity=0.330 Sum_probs=332.5
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+|+|++..+.++.+.. ..+ ..+|++++|+++|+|++.....+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~----------------~~~-~~~d~~~~e~~rg~T~~~~~~~~ 70 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA----------------KKY-DEIDSAPEEKARGITINTAHVEY 70 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc----------------ccc-ccccCChhhhcCCEeEEccEEEE
Confidence 3568899999999999999999999987766532211 111 24899999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++++.+++|+|||||.+|++++++++..+|++++|||+.+ |+.+|+++|+.++..+|++++|+|+||||+++.
T Consensus 71 ~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-------g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 71 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-------GPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 9989999999999999999999999999999999999999 899999999999999999989999999999864
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccC-----CCCCCC-CcHHHHhhcc-cCCCcCCCCCce
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNN-----MLWYNG-PTLISLLESL-NTNEKIDKKPLR 550 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~-----~~w~~~-~~L~~~l~~~-~~~~~~~~~~~~ 550 (967)
++.++.+.+++..+++.++++ .++++|+||++|+|+.+...+ .+||++ ++|++.+++. +.|.+..++||+
T Consensus 144 -~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r 222 (409)
T CHL00071 144 -EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFL 222 (409)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEE
Confidence 446777888999999998874 489999999999998765544 389985 8999999874 566667789999
Q ss_pred eeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCC
Q psy3751 551 FPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPS--GKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDIS 626 (967)
Q Consensus 551 ~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~--~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~ 626 (967)
|+|+++|+..+.| ++++|+|.+|++++||.|.+.|. +..++|++|++++.++++|.|||+|++++++ ..+++
T Consensus 223 ~~I~~v~~~~g~G----~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~ 298 (409)
T CHL00071 223 MAIEDVFSITGRG----TVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIE 298 (409)
T ss_pred EEEEEEEEeCCCe----EEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcC
Confidence 9999999999887 89999999999999999998763 5679999999999999999999999999974 46799
Q ss_pred CCcccccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCE
Q psy3751 627 RGNMLVSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDI 700 (967)
Q Consensus 627 ~G~vl~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~ 700 (967)
+||+|++++ ++.++++|+|+|.+|++ .+|.+|+++++|+|+.+++|+|..|... ...+|+.+++|+.
T Consensus 299 ~G~vl~~~~-~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~------~~~~~~~l~~g~~ 371 (409)
T CHL00071 299 RGMVLAKPG-TITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD------DGSKTEMVMPGDR 371 (409)
T ss_pred CeEEEecCC-CCCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc------CCCCCcEecCCCE
Confidence 999999975 46778999999999985 5899999999999999999999998652 1246889999999
Q ss_pred EEEEEeecCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 701 GCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 701 a~v~l~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
+.|+|++++|+|+++ .|||+||+ .++|+|.|.+..+
T Consensus 372 a~v~l~~~~pi~~e~------~~rfilR~--~~~tig~G~V~~~ 407 (409)
T CHL00071 372 IKMTVELIYPIAIEK------GMRFAIRE--GGRTVGAGVVSKI 407 (409)
T ss_pred EEEEEEECCeEEEee------CCEEEEec--CCeEEEEEEEEEe
Confidence 999999999999998 47999997 4789998887653
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=4e-56 Score=501.49 Aligned_cols=373 Identities=23% Similarity=0.325 Sum_probs=325.1
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+.++.+||+++||+|||||||+++|++..+ ..|. .++...+.+|++++|+++|+|++.+...+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~--~~~~~~~~~d~~~~E~~rGiT~~~~~~~~ 70 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGG--GEAKAYDQIDNAPEEKARGITINTSHVEY 70 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCC--cccchhhhccCChhHHhcCceEEEeeeEE
Confidence 457889999999999999999999997321 1222 23333357899999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++++.+++|+|||||++|+++++.++..+|++++|||+.+ |+.+|+++|+.++..+|++++|+|+||||+++
T Consensus 71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~-------g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~- 142 (396)
T PRK12735 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-------GPMPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred cCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-------CCchhHHHHHHHHHHcCCCeEEEEEEecCCcc-
Confidence 8888999999999999999999999999999999999998 88899999999999999997778999999985
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCC-CcHHHHhhc-ccCCCcCCCCCceeeEEE
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNG-PTLISLLES-LNTNEKIDKKPLRFPVQL 555 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~-~~L~~~l~~-~~~~~~~~~~~~~~~i~~ 555 (967)
+++.++.+.++++.+++.+++. +++++|+||++|.|.. ..++||.+ ++|++.|++ ++.|.+..++||+|+|++
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~---~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~ 219 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD---DDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIED 219 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCC---CCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEE
Confidence 4456777888899999988763 5899999999999964 45789975 789998887 466777778999999999
Q ss_pred eecCCCccCCCceEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccc
Q psy3751 556 VARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPS--GKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNML 631 (967)
Q Consensus 556 v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~--~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl 631 (967)
+|+..+.| ++++|+|.+|++++||+|.+.|. +++++|++|++++.++++|.|||+|+++|++ ..++++|+||
T Consensus 220 ~f~v~g~G----tvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl 295 (396)
T PRK12735 220 VFSISGRG----TVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVL 295 (396)
T ss_pred EEecCCce----EEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEE
Confidence 99999888 89999999999999999999986 4688999999999999999999999999985 4689999999
Q ss_pred ccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEE
Q psy3751 632 VSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTI 705 (967)
Q Consensus 632 ~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l 705 (967)
++++ ++.+++.|+|++.+|++ .+|.+|+++++|+|+.++.|+|... .++++|++|+.+.|+|
T Consensus 296 ~~~~-~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-----------~~~~~l~~g~~a~v~l 363 (396)
T PRK12735 296 AKPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELP-----------EGVEMVMPGDNVKMTV 363 (396)
T ss_pred EcCC-CCCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEcc-----------CCCceeCCCCEEEEEE
Confidence 9975 45678999999999996 5799999999999999999998532 1467899999999999
Q ss_pred eecCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 706 NIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 706 ~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
++++|+|+++ .|||+||+ .++|+|.|.++.+
T Consensus 364 ~~~~p~~~~~------~~rfilR~--~g~tv~~G~V~~v 394 (396)
T PRK12735 364 ELIAPIAMEE------GLRFAIRE--GGRTVGAGVVAKI 394 (396)
T ss_pred EECceEEEeE------CCEEEEEc--CCcEEEEEEEEEe
Confidence 9999999998 47999998 4789998888654
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=8.2e-56 Score=498.25 Aligned_cols=373 Identities=24% Similarity=0.338 Sum_probs=324.0
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+++|++... ..|. +....+ +.+|++++|+++|+|++.+...+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~-~~~~~~-~~~d~~~~E~~rg~Ti~~~~~~~ 70 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGG-AEAKAY-DQIDKAPEEKARGITINTAHVEY 70 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccC-Ccccch-hhccCChHHHhcCeEEeeeEEEE
Confidence 456889999999999999999999997221 1111 122222 36899999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++++.+++|+|||||.+|..++..++..+|++++|||+.+ |+.+|+++|+.++..++++.+||++||||+++
T Consensus 71 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~-------g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~- 142 (396)
T PRK00049 71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-------GPMPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred cCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-------CCchHHHHHHHHHHHcCCCEEEEEEeecCCcc-
Confidence 8888999999999999999999999999999999999998 88999999999999999997778999999986
Q ss_pred CHHHHHHHHHHHHHHHHHcCC--ccceEEeccccCCCcccccccCCCCCCC-CcHHHHhhc-ccCCCcCCCCCceeeEEE
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHF--QNINTIPISALNGDNIISASNNMLWYNG-PTLISLLES-LNTNEKIDKKPLRFPVQL 555 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~--~~~~ii~iSa~~g~gi~~l~~~~~w~~~-~~L~~~l~~-~~~~~~~~~~~~~~~i~~ 555 (967)
+++.++.+.++++.+++.+++ ++++++|+||++|.|- +..++||++ ++|+++|++ ++.|.+..++||+|+|++
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~---~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~ 219 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEG---DDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIED 219 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCC---CCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEE
Confidence 455677788889999998887 3689999999999773 456899976 789999987 566777778999999999
Q ss_pred eecCCCccCCCceEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccc
Q psy3751 556 VARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPS--GKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNML 631 (967)
Q Consensus 556 v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~--~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl 631 (967)
+|+..+.| ++++|+|.+|++++||+|.+.|. ++.++|+||++++.++++|.|||+|++++++ ..++++|++|
T Consensus 220 ~f~v~g~G----~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl 295 (396)
T PRK00049 220 VFSISGRG----TVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVL 295 (396)
T ss_pred EEeeCCce----EEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEE
Confidence 99999888 89999999999999999999886 6889999999999999999999999999985 4689999999
Q ss_pred ccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEE
Q psy3751 632 VSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTI 705 (967)
Q Consensus 632 ~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l 705 (967)
++++ ++.+++.|+|+|.+|++ .+|.+|+++++|+|+.++.|+|. +. .+++++++||.+.|+|
T Consensus 296 ~~~~-~~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l~----------~~~~~l~~g~~a~v~i 363 (396)
T PRK00049 296 AKPG-SITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-LP----------EGVEMVMPGDNVEMTV 363 (396)
T ss_pred ecCC-CCCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-ec----------CCCcccCCCCEEEEEE
Confidence 9975 45678999999999995 58999999999999999999983 21 2578899999999999
Q ss_pred eecCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 706 NIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 706 ~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
++++|+|+++ .|||+||| .++|+|.|.+..+
T Consensus 364 ~~~~p~~~e~------~~RfilR~--~g~t~~~G~V~~v 394 (396)
T PRK00049 364 ELIAPIAMEE------GLRFAIRE--GGRTVGAGVVTKI 394 (396)
T ss_pred EECceEEEee------CCEEEEec--CCcEEEEEEEEEe
Confidence 9999999998 47999998 4789988887653
No 16
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-56 Score=444.45 Aligned_cols=372 Identities=23% Similarity=0.332 Sum_probs=319.7
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
...+++.||+.|||+|||||||..+|+..+.. .+. ....+|+. .|+.++|+++||||+.++..
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~---------------~~~-~~~~~y~~-id~aPeEk~rGITIntahve 69 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAK---------------KGG-AEAKAYDQ-IDNAPEEKARGITINTAHVE 69 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHh---------------hcc-ccccchhh-hccCchHhhcCceeccceeE
Confidence 35679999999999999999999999862211 110 12222332 47899999999999999999
Q ss_pred eecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC
Q psy3751 399 FNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 399 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~ 478 (967)
+++.++.+..+|+|||.||++||+.++.++|++||||.|.+ |.++||++|++++++.|+|.+++++||+|+++
T Consensus 70 yet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~d-------GpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-------GPMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred EecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCC-------CCCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999997
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCC-CcHHHHhhc-ccCCCcCCCCCceeeEE
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNG-PTLISLLES-LNTNEKIDKKPLRFPVQ 554 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~-~~L~~~l~~-~~~~~~~~~~~~~~~i~ 554 (967)
+++..+.+..++++++..++++ +.|++.-||+.-..-+ -+|... ..|++++++ +|.|++..++||+|||.
T Consensus 143 -d~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~-----~~~~~~i~eLm~avd~yip~Per~~dkPflmpvE 216 (394)
T COG0050 143 -DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGD-----AKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVE 216 (394)
T ss_pred -cHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCC-----cchHHHHHHHHHHHHhcCCCCCCcccccccccce
Confidence 5778899999999999999986 7889988886543211 124321 236666665 58899999999999999
Q ss_pred EeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcc
Q psy3751 555 LVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG--KKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNM 630 (967)
Q Consensus 555 ~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~--~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~v 630 (967)
++|++.+.| ++++|||++|+|++|+++.+.... ++..|++|++|++..+++.||++|++.++. ..++.||++
T Consensus 217 dvfsIsgrg----tvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqv 292 (394)
T COG0050 217 DVFSISGRG----TVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQV 292 (394)
T ss_pred eeEEEcCce----eEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceE
Confidence 999999988 999999999999999999987654 678999999999999999999999999985 678999999
Q ss_pred cccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEE
Q psy3751 631 LVSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVT 704 (967)
Q Consensus 631 l~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~ 704 (967)
|+.| ..+.+...|+|++++|++ .|+..||++.++..|..+++.++.- .....+.+||.+.+.
T Consensus 293 Lakp-gsi~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l~-----------eg~emvmpgdnv~~~ 360 (394)
T COG0050 293 LAKP-GSIKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITLP-----------EGVEMVMPGDNVKMV 360 (394)
T ss_pred eecC-CcccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEecc-----------CCcceecCCCceEEE
Confidence 9997 568899999999999985 5899999999999999999865432 135788999999999
Q ss_pred EeecCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 705 INIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 705 l~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
++|.+|++++. +-||.+|+ .++|+|.+.+.++
T Consensus 361 veLi~pia~e~------G~rFaIre--GgrtvgaGvV~~i 392 (394)
T COG0050 361 VELIHPIAMEE------GLRFAIRE--GGRTVGAGVVTKI 392 (394)
T ss_pred EEEeeeeecCC------CCEEEEEe--CCeeeeeeEEeee
Confidence 99999999999 56999987 6899998887654
No 17
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.8e-55 Score=494.30 Aligned_cols=371 Identities=23% Similarity=0.345 Sum_probs=320.3
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+++|++..+ ..|. ..+...+.+|++++|+++|+|++.....+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~--~~~~~~~~~d~~~~E~~rg~T~~~~~~~~ 70 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGL--NQAKDYDSIDAAPEEKERGITINTAHVEY 70 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhcc--ccccchhhhcCCHHHHhcCccEEEEeeEe
Confidence 467889999999999999999999986211 1121 22323347899999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++++++++|+|||||++|+.++++++..+|++++|||+.+ |+.+|+++|+.++..+|++++|+|+||||+++
T Consensus 71 ~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~-------g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~- 142 (394)
T PRK12736 71 ETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-------GPMPQTREHILLARQVGVPYLVVFLNKVDLVD- 142 (394)
T ss_pred cCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-------CCchhHHHHHHHHHHcCCCEEEEEEEecCCcc-
Confidence 8888999999999999999999999999999999999999 89999999999999999998899999999985
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCC-CcHHHHhhc-ccCCCcCCCCCceeeEEE
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNG-PTLISLLES-LNTNEKIDKKPLRFPVQL 555 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~-~~L~~~l~~-~~~~~~~~~~~~~~~i~~ 555 (967)
+++.++.+.++++.+++.++++ +++++|+||++|.+.. .+||.+ ++|++.+++ ++.|.+..++||+|+|++
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~-----~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~ 217 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGD-----PKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVED 217 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCC-----CcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEE
Confidence 3446666778899999888874 5799999999996422 369864 678888776 566777778999999999
Q ss_pred eecCCCccCCCceEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccc
Q psy3751 556 VARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPS--GKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNML 631 (967)
Q Consensus 556 v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~--~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl 631 (967)
+|+.++.| ++++|+|++|+|++||.|.+.|. +++++|++|++++.++++|.|||+|+++|++ ..++++||+|
T Consensus 218 ~~~~~g~G----~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl 293 (394)
T PRK12736 218 VFTITGRG----TVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVL 293 (394)
T ss_pred EEecCCcE----EEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEE
Confidence 99999888 89999999999999999999987 6789999999999999999999999999985 4679999999
Q ss_pred ccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEE
Q psy3751 632 VSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTI 705 (967)
Q Consensus 632 ~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l 705 (967)
++++ ++.++++|+|++.+|++ .++.+|+++++|+|+.++.|+|... .++++|++|+.+.|+|
T Consensus 294 ~~~~-~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-----------~~~~~l~~g~~a~v~l 361 (394)
T PRK12736 294 AKPG-SIKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELP-----------EGTEMVMPGDNVTITV 361 (394)
T ss_pred ecCC-CCCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEec-----------CCcceeCCCCEEEEEE
Confidence 9975 45678999999999985 5799999999999999999998532 1467899999999999
Q ss_pred eecCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 706 NIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 706 ~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
++++|+|+++ .+||+||+ .++|+|.|.++.+
T Consensus 362 ~~~~p~~~~~------~~rfilR~--~g~tv~~G~V~~v 392 (394)
T PRK12736 362 ELIHPIAMEQ------GLKFAIRE--GGRTVGAGTVTEI 392 (394)
T ss_pred EECceEEEee------CCEEEEec--CCcEEEEEEEEEe
Confidence 9999999998 37999998 4789998887653
No 18
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=6e-55 Score=492.80 Aligned_cols=371 Identities=23% Similarity=0.320 Sum_probs=320.7
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+++|++... ..|+ .++...+.+|++++|+++|+|++.....+
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---------------~~g~--~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~ 70 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---------------KEGG--AAARAYDQIDNAPEEKARGITINTAHVEY 70 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---------------Hhhc--ccccccccccCCHHHHhcCcceeeEEEEE
Confidence 456889999999999999999999986211 1122 22333467999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
+.++++++|+|||||++|..+++.++..+|++++|||+.+ |+.+|+++|+.++..++++++|+|+||||++++
T Consensus 71 ~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~-------g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 71 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD-------GPMPQTREHILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred cCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH
Confidence 8888899999999999999999999999999999999999 889999999999999999988889999999863
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCC-CcHHHHhhcc-cCCCcCCCCCceeeEEE
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNG-PTLISLLESL-NTNEKIDKKPLRFPVQL 555 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~-~~L~~~l~~~-~~~~~~~~~~~~~~i~~ 555 (967)
++.++.+.++++.+++.+++. +++++++||++|.+.. .+||.+ ++|++.++++ +.|.+..++||+|+|++
T Consensus 144 -~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~-----~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~ 217 (394)
T TIGR00485 144 -EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGD-----AEWEAKILELMDAVDEYIPTPERETDKPFLMPIED 217 (394)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccC-----CchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEE
Confidence 445666778899999988864 3799999999996532 369974 7788888775 55666778999999999
Q ss_pred eecCCCccCCCceEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccc
Q psy3751 556 VARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPS--GKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNML 631 (967)
Q Consensus 556 v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~--~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl 631 (967)
+|+.++.| ++++|+|.+|+|++||.|.+.|. +++++|++|++++.++++|.|||+|++++++ ..++++||+|
T Consensus 218 vf~~~g~G----~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 218 VFSITGRG----TVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEeeCCce----EEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 99999888 89999999999999999999884 5789999999999999999999999999985 4679999999
Q ss_pred ccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEE
Q psy3751 632 VSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTI 705 (967)
Q Consensus 632 ~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l 705 (967)
++++ ++.+++.|+|++.+|++ .+|..|+++++|+|+.++.|+|..+ .++.+|++|+.+.|+|
T Consensus 294 ~~~~-~~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~-----------~~~~~l~~g~~a~v~~ 361 (394)
T TIGR00485 294 AKPG-SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLP-----------EGVEMVMPGDNVKMTV 361 (394)
T ss_pred ecCC-CCCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEec-----------CCcceeCCCCEEEEEE
Confidence 9974 45678999999999986 5899999999999999999998743 1477899999999999
Q ss_pred eecCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 706 NIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 706 ~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
++++|+++++ ++||+||+ .++|+|.|.++.+
T Consensus 362 ~~~~p~~~~~------~~rfilR~--~g~tv~~G~V~~v 392 (394)
T TIGR00485 362 ELISPIALEQ------GMRFAIRE--GGRTVGAGVVSKI 392 (394)
T ss_pred EECceEEEeE------CCEEEEec--CCcEEEEEEEEEe
Confidence 9999999999 57999997 3789988887653
No 19
>KOG0460|consensus
Probab=100.00 E-value=1.2e-56 Score=453.29 Aligned_cols=377 Identities=25% Similarity=0.339 Sum_probs=321.8
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
...+++.||+.|||+|||||||..+++.-.. ..|. ....+|. -.|+-++|+.|||||+..+..
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila---------------~~g~-A~~~kyd-eID~APEEkaRGITIn~aHve 111 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILA---------------EKGG-AKFKKYD-EIDKAPEEKARGITINAAHVE 111 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHH---------------hccc-cccccHh-hhhcChhhhhccceEeeeeee
Confidence 3567999999999999999999999986111 1111 0122222 258999999999999999999
Q ss_pred eecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC
Q psy3751 399 FNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 399 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~ 478 (967)
+++..+.|..+|||||.||++||+.++++.|++||||.|++ |.++||+||++++++.|+++++|.+||.|+++
T Consensus 112 YeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatD-------G~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 112 YETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATD-------GPMPQTREHLLLARQVGVKHIVVFINKVDLVD 184 (449)
T ss_pred eeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCC-------CCCcchHHHHHHHHHcCCceEEEEEecccccC
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999997
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCCCcHHHHhhc-ccCCCcCCCCCceeeEEE
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLES-LNTNEKIDKKPLRFPVQL 555 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~ 555 (967)
+++..+-+..++++++..+|++ +.|+|.-||+.-.--.+. .+.-..-..|++++++ +|.|.+..++||.|||.+
T Consensus 185 -d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~p--eig~~aI~kLldavDsyip~P~R~~~~pFl~pie~ 261 (449)
T KOG0460|consen 185 -DPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQP--EIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIED 261 (449)
T ss_pred -CHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCc--cccHHHHHHHHHHHhccCCCcccccCCCceeehhh
Confidence 4567788888999999999985 789999887643211110 0000001237788887 799999999999999999
Q ss_pred eecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccc
Q psy3751 556 VARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG--KKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNML 631 (967)
Q Consensus 556 v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~--~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl 631 (967)
+|.++|.| ||++|++++|+|++||++.+...+ .+.+|.+|++|++.+++|.|||++++.+++ ..+++|||++
T Consensus 262 vfsI~GRG----TVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl 337 (449)
T KOG0460|consen 262 VFSIPGRG----TVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVL 337 (449)
T ss_pred eeeecCCc----eEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEE
Confidence 99999988 999999999999999999998765 578899999999999999999999999986 5689999999
Q ss_pred ccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEE
Q psy3751 632 VSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTI 705 (967)
Q Consensus 632 ~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l 705 (967)
+.|+. ..+.+.|+|++++|++ +|+..+|.+.+++.|..+.|+|...- +.+.+.+||.+.+++
T Consensus 338 ~~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~-----------~~~mvMPGe~~~~~~ 405 (449)
T KOG0460|consen 338 AKPGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPP-----------EKEMVMPGENVKVEV 405 (449)
T ss_pred ecCCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccC-----------hHhcccCCCCeEEEE
Confidence 99854 8999999999999985 58999999999999999999986541 146899999999999
Q ss_pred eecCceeeccccCccCCccceeecccccccceEEEEEecCC
Q psy3751 706 NIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 706 ~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
.|.+|+++++ +.||.||+ .+.|+|.+.+..+-|
T Consensus 406 ~Li~pm~le~------GqrFtiRe--Gg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 406 TLIRPMPLEK------GQRFTLRE--GGRTVGTGVVTDTLP 438 (449)
T ss_pred EEecccccCC------CceeeEcc--CCeeeeeeeEeeeee
Confidence 9999999999 67999987 688999998876644
No 20
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=5e-55 Score=494.46 Aligned_cols=371 Identities=23% Similarity=0.319 Sum_probs=317.2
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeee-ccCCchhhhccceeEeecee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSL-LTDGLESEREQGITIDVAYR 397 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~e~~~g~Ti~~~~~ 397 (967)
...++.+||+++||+|||||||+++|++.. ...|+ ..++.+ .+|+.++|+++|+|++..+.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~---~~~~~~~~~D~~~~E~~rGiTi~~~~~ 117 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGK---AKAVAFDEIDKAPEEKARGITIATAHV 117 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhc---ccceeeccccCChhHhhcCceeeeeEE
Confidence 345788999999999999999999997510 11122 222333 68999999999999999999
Q ss_pred eeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 398 YFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 398 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
.+++++++++|+|||||.+|+++|+.++..+|+++||||+.+ |+.+|+++|+.++..+|++++|+|+||||++
T Consensus 118 ~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~-------g~~~qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 118 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-------GPMPQTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred EEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCC-------CCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 999999999999999999999999999999999999999998 8899999999999999999888999999998
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCc--cceEEeccccC---CCcccccccCCCCCCCCcHHHHhhcc-cCCCcCCCCCcee
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALN---GDNIISASNNMLWYNGPTLISLLESL-NTNEKIDKKPLRF 551 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~---g~gi~~l~~~~~w~~~~~L~~~l~~~-~~~~~~~~~~~~~ 551 (967)
+ +++.++.+.++++++++.++++ ++|++|+||++ |.|+. ..|+.+++|++.++++ |.|.+..++||+|
T Consensus 191 ~-~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~-----~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~ 264 (447)
T PLN03127 191 D-DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE-----IGKNAILKLMDAVDEYIPEPVRVLDKPFLM 264 (447)
T ss_pred C-HHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcc-----cccchHHHHHHHHHHhCCCCCcccccceEe
Confidence 6 3445666777888888877763 68999998874 54432 2355667788888874 6677777899999
Q ss_pred eEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecC----CcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCC
Q psy3751 552 PVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPS----GKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDI 625 (967)
Q Consensus 552 ~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~----~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i 625 (967)
+|+++|+..+.| +|++|+|++|.+++||+|.+.|. +.+++|++|++++.++++|.|||+|+++|++ ..++
T Consensus 265 ~I~~vf~v~g~G----tVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i 340 (447)
T PLN03127 265 PIEDVFSIQGRG----TVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDV 340 (447)
T ss_pred eEEEEEEcCCce----EEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHC
Confidence 999999999888 99999999999999999999864 4689999999999999999999999999985 4689
Q ss_pred CCCcccccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCC
Q psy3751 626 SRGNMLVSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLND 699 (967)
Q Consensus 626 ~~G~vl~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~ 699 (967)
+|||||+++ .++.++++|+|+|.+|++ .+|.+||++++|+|+.+++|+|... .++.++++||
T Consensus 341 ~rG~Vl~~~-~~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~~-----------~~~~~l~~gd 408 (447)
T PLN03127 341 QRGQVICKP-GSIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVELP-----------EGVKMVMPGD 408 (447)
T ss_pred CCccEEecC-CCCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEec-----------cCccccCCCC
Confidence 999999998 457789999999999986 5799999999999999999998532 1478899999
Q ss_pred EEEEEEeecCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 700 IGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 700 ~a~v~l~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
.+.|+|++.+|+|+++ +|||+||+ .++|+|.|.+..+
T Consensus 409 ~a~v~l~~~~p~~le~------g~RfilR~--~g~Tvg~G~V~~v 445 (447)
T PLN03127 409 NVTAVFELISPVPLEP------GQRFALRE--GGRTVGAGVVSKV 445 (447)
T ss_pred EEEEEEEECceEEEee------CCEEEEEe--CCcEEEEEEEEEe
Confidence 9999999999999998 48999997 4689998887653
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=9.6e-52 Score=465.26 Aligned_cols=348 Identities=22% Similarity=0.259 Sum_probs=296.2
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.+.+.++|+++||+|||||||+++|++. .+|++++|++||+|++.+|.++
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~------------------------------~~~r~~~E~~rGiTi~lGfa~~ 79 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGV------------------------------KTVRFKREKVRNITIKLGYANA 79 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCC------------------------------CcccchhhHHhCCchhcccccc
Confidence 5578899999999999999999999961 1578899999999999998765
Q ss_pred e---------------cC------------------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCC
Q psy3751 400 N---------------TP------------------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSV 446 (967)
Q Consensus 400 ~---------------~~------------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~ 446 (967)
. .. .+.++|+|||||++|+++|+.++..+|+++|||||.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~------- 152 (460)
T PTZ00327 80 KIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANE------- 152 (460)
T ss_pred ccccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCC-------
Confidence 2 11 2478999999999999999999999999999999998
Q ss_pred C-chhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCC
Q psy3751 447 N-LLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLW 525 (967)
Q Consensus 447 g-~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w 525 (967)
+ +++||++|+.++..+|++++|||+||||+++ .+...+..++++.+++.....+.++||+||++|.|++.
T Consensus 153 g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~--~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~------- 223 (460)
T PTZ00327 153 SCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK--EAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDV------- 223 (460)
T ss_pred CccchhhHHHHHHHHHcCCCcEEEEEecccccC--HHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHH-------
Confidence 6 6899999999999999999999999999985 34456666777777766545567999999999999987
Q ss_pred CCCCcHHHHhh-cccCCCcCCCCCceeeEEEeecCCCccCC----CceEEEEEEEeeeecCCCEEEEecCC---------
Q psy3751 526 YNGPTLISLLE-SLNTNEKIDKKPLRFPVQLVARHCGHISK----DFRGYMGRIESGIIKKNDCLIVEPSG--------- 591 (967)
Q Consensus 526 ~~~~~L~~~l~-~~~~~~~~~~~~~~~~i~~v~~~~~~~~~----~~~v~~G~v~~G~l~~g~~v~i~p~~--------- 591 (967)
|++.|+ .++.+.+..++||+++|+++|...+.+.+ .++|++|+|.+|++++||+|.+.|.+
T Consensus 224 -----Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~ 298 (460)
T PTZ00327 224 -----VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEF 298 (460)
T ss_pred -----HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCcc
Confidence 778887 67877777789999999999876642211 12899999999999999999999975
Q ss_pred ----cEEEEEEEEeCccccceeecCCeEEEEEc---c--ccCCCCCcccccCCCCccccceeEEEEEEecc---------
Q psy3751 592 ----KKATIKDIQMLNKSLDMAITGQSVTLIIK---E--YLDISRGNMLVSPFKRPVSLRSINANLCWLSE--------- 653 (967)
Q Consensus 592 ----~~~~V~~i~~~~~~v~~a~~G~~v~l~l~---~--~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~--------- 653 (967)
..++|++|++++.++++|.|||+|++++. + ..++.|||||++++.++..++.|+|++.||++
T Consensus 299 ~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~ 378 (460)
T PTZ00327 299 TCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDG 378 (460)
T ss_pred ccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccccccc
Confidence 46899999999999999999999999986 2 35799999999987777778899999999975
Q ss_pred ------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCccCCcccee
Q psy3751 654 ------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFIL 727 (967)
Q Consensus 654 ------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~~grfil 727 (967)
.+|++|+++++|+||.++.|+|..+.. +. .++|++.+|+++.+ +.||+|
T Consensus 379 ~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~~------------------~~-~~~l~l~~P~~~~~------gdr~il 433 (460)
T PTZ00327 379 KKATKVAKLKKGESLMINIGSTTTGGRVVGIKD------------------DG-IAKLELTTPVCTSV------GEKIAL 433 (460)
T ss_pred ccccCCcccCCCCEEEEEecccEEEEEEEEeCC------------------Ce-EEEEEECccEeccC------CCEEEE
Confidence 579999999999999999999998731 11 67789999999988 569999
Q ss_pred ecc-cc-cccceEEEEEe
Q psy3751 728 IDE-IT-FQTVAAVYIIG 743 (967)
Q Consensus 728 ~d~-~~-~~~~~~~~~vg 743 (967)
|+. ++ ++|+|.|.+.+
T Consensus 434 r~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 434 SRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EeccCCCcEEEEEEEEcC
Confidence 976 45 68999998775
No 22
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=8.8e-53 Score=441.11 Aligned_cols=295 Identities=55% Similarity=0.884 Sum_probs=271.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhC
Q psy3751 15 NNLYLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLG 94 (967)
Q Consensus 15 ~~~~l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~g 94 (967)
.+.+|+.++++++++|+++++.+++++++|||||||+|||||+.+++.+.+++++++|+|||++||||++|+++++++||
T Consensus 15 ~~~~L~~le~esi~ilrea~~~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~g 94 (312)
T PRK12563 15 RMGHLDRLEAESIHILREVVAECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELG 94 (312)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999999999998766678999999999999999999999999999
Q ss_pred CcEEEEecchhhhhcccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCC
Q psy3751 95 ETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQR 174 (967)
Q Consensus 95 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~ 174 (967)
++++++.+...+..+...+....+.+|..+|..++.+++.++++++|++|+|+||+.+|+.+++++.+..++.|++++++
T Consensus 95 l~Liv~~~~~~~~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~sRak~~ifs~r~~~~~wD~~~qr 174 (312)
T PRK12563 95 LDLVVHHNPDGIARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSFRSAFHRWDPKAQR 174 (312)
T ss_pred CcEEEecChHHHHhCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhhhhccCceecccccccccCccccC
Confidence 99999988877766543333333444555777889999988999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccC-CCCCCCCccceeeeE
Q psy3751 175 PELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTN-LTPAHPGEIIENLMV 253 (967)
Q Consensus 175 p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~-~~~~~~~~~~~~~~~ 253 (967)
|++|..||+....|..++++||++||+.|||.||..++|||||||+++.+++.+++|.++++++ ..++.|+|..+.++.
T Consensus 175 Pelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 254 (312)
T PRK12563 175 PELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLVPLYFAKRRPVVERDGLLIMVDDERTPLRPGETPQQRKV 254 (312)
T ss_pred hhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCCcchhcCCCceEEECCeEEeccccccCCCCCCcccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999988 679999999999999
Q ss_pred EEeccccccccccccCCcCChHHHHHhhhhhhhhhhcccccccccchhhHHhhhccc
Q psy3751 254 RFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTE 310 (967)
Q Consensus 254 r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 310 (967)
||+++|||+||.++.|.++|++++++|+.....+|+.. |..++.+..++|.+++.+
T Consensus 255 r~Rtlg~~~~t~~v~s~a~~~~~ii~e~~~~~~~er~~-r~~d~~~~~~me~~k~~g 310 (312)
T PRK12563 255 RFRTLGCYPLTGAVESDADTVEKIIQEMAVTRISERQG-RMIDQDSAASMEKKKKEG 310 (312)
T ss_pred EeeccCCccccCccCCCCCCHHHHHHHHHhccCccccc-ccccccchhhHHHHHhcC
Confidence 99999999999999999999999999999888999995 899999999999887653
No 23
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=100.00 E-value=2.2e-52 Score=438.08 Aligned_cols=291 Identities=52% Similarity=0.860 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLI 98 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~ 98 (967)
|+.++.+++++|+++++.+++++++|||||||+|||||+.+++.+.+++++++|+|||++||||++|+++++++||++++
T Consensus 1 l~~le~esi~ilRe~~~~f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~ 80 (294)
T TIGR02039 1 LRALESEAIHIIREVAAEFERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLI 80 (294)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEE
Confidence 46789999999999999999999999999999999999999987656789999999999999999999999999999999
Q ss_pred EEecchhhhhcccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcccc
Q psy3751 99 VRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELW 178 (967)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~ 178 (967)
++.+++.+..+..........+|..+|..++.+++.++++++|++|+|+||+.+|+..++++.+..++.|+++.++|++|
T Consensus 81 v~~~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~sRake~i~s~r~~~~~wD~~~q~Pelw 160 (294)
T TIGR02039 81 VHSNEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRNAFHQWDPKKQRPELW 160 (294)
T ss_pred EEechhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhhHhhcCceeeccccccccCccccCchhh
Confidence 99998766555433333333466668889999999999999999999999999999999999988889999999999999
Q ss_pred ccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccC-CCCCCCCccceeeeEEEec
Q psy3751 179 NLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTN-LTPAHPGEIIENLMVRFRT 257 (967)
Q Consensus 179 ~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~-~~~~~~~~~~~~~~~r~~~ 257 (967)
..||+...++..++++||++||+.|||.||..++|||||||+++.++..+++|.++++++ +.++.|+|....++.||++
T Consensus 161 ~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~r~rt 240 (294)
T TIGR02039 161 NLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIPIVPLYFAAKRPVVQRDGMLIMVDDVRMPLAPGEVVKERMVRFRT 240 (294)
T ss_pred hccccccccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCeecCccceeeccCeEEecCccccCCCCCCcccccceeecc
Confidence 999998888899999999999999999999999999999999999999999999999977 7899999999999999999
Q ss_pred cccccccccccCCcCChHHHHHhhhhhhhhhhcccccccccchhhHHhhhccc
Q psy3751 258 VGDILCTCPILSNATTVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTE 310 (967)
Q Consensus 258 ~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 310 (967)
+||++||.+++|.++|++++++|......+|++. |..++.+..+++.+++.+
T Consensus 241 ~g~~~~t~~~~s~a~~~~~~~~e~~~~~~~er~~-r~~d~~~~~~me~~k~~g 292 (294)
T TIGR02039 241 LGCYPLTGAIESDAATVEEIIAETAAARTSERQG-RAIDRDQAASMEDKKREG 292 (294)
T ss_pred cCcccCCCcccCCCCCHHHHHHHHHhccCccccc-ccccccchhhHHHHHhcC
Confidence 9999999999999999999999999999999985 999999999999887753
No 24
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=1.7e-51 Score=437.01 Aligned_cols=296 Identities=56% Similarity=0.942 Sum_probs=270.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHh
Q psy3751 14 LNNLYLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKL 93 (967)
Q Consensus 14 ~~~~~l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~ 93 (967)
..+.+|+.++++++++|+++++.+++++++|||||||+|||||+.+++.+.+++++++|+|||++||++++|+++++++|
T Consensus 4 ~~~~~L~~le~esi~iLrea~~~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~ 83 (301)
T PRK05253 4 YRLTHLDQLEAESIHILREVAAEFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKEL 83 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999999999876667899999999999999999999999999
Q ss_pred CCcEEEEecchhhhhcccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCC
Q psy3751 94 GETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQ 173 (967)
Q Consensus 94 gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~ 173 (967)
|++++++.+......+........|.+|..+|..++.++++++++++|++|+|+||+.+|+...+++..+.++.|+++++
T Consensus 84 gl~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~~Ra~e~~fs~r~~~~~wd~~~q 163 (301)
T PRK05253 84 GLELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSFRDEFGQWDPKNQ 163 (301)
T ss_pred CCCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhhhhccCccccccccccccCcccc
Confidence 99999998876655544333333455666678899999999999999999999999999999999998888999999999
Q ss_pred CccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeE
Q psy3751 174 RPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMV 253 (967)
Q Consensus 174 ~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~ 253 (967)
+|++|..||+...++..++++||++||+.|||+|+..++|||||||+.++|++.+++|.+++++++.++.|+|..+.++.
T Consensus 164 ~Pelw~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (301)
T PRK05253 164 RPELWNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVVEERMV 243 (301)
T ss_pred ChhhhhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCCCCcccccCCCceEeECCeEEecccccCCCCCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred EEeccccccccccccCCcCChHHHHHhhhhhhhhhhcccccccccchhhHHhhhccc
Q psy3751 254 RFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTE 310 (967)
Q Consensus 254 r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 310 (967)
||+++||++||.++.|.++|++++++|......+|++. +..++.+..++|.++..+
T Consensus 244 r~r~~g~~~~t~~~~s~a~~~~~~~~e~~~~~~~er~~-r~~d~~~~~~me~~~~~g 299 (301)
T PRK05253 244 RFRTLGCYPCTGAVESEAATLEEIIAEMLVTRTSERGG-RAIDDDQEASMEKRKREG 299 (301)
T ss_pred eeeccCCccCCCcccCCCCCHHHHHHHHHhccCccccc-ccccccchhhHHHHHhcC
Confidence 99999999999999999999999999999889999997 666666677888777653
No 25
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=3.9e-49 Score=462.06 Aligned_cols=340 Identities=22% Similarity=0.345 Sum_probs=299.5
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-C
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-K 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~ 403 (967)
+.|+++||+|||||||+++|++. .+|++++|+++|+|++.++..+... +
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~------------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g 50 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGV------------------------------NADRLPEEKKRGMTIDLGYAYWPQPDG 50 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC------------------------------CCccchhcccCCceEEeeeEEEecCCC
Confidence 35899999999999999999861 1578889999999999999888764 5
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF 483 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 483 (967)
..++|||||||++|+++|+.++..+|++++|||+++ |+++||++|+.++..++++++|||+||+|+++ ++.
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e-------g~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~--~~~ 121 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD-------GVMAQTREHLAILQLTGNPMLTVALTKADRVD--EAR 121 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCeEEEEEECCccCC--HHH
Confidence 678999999999999999999999999999999999 99999999999999999998899999999984 456
Q ss_pred HHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeecCCCcc
Q psy3751 484 YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHI 563 (967)
Q Consensus 484 ~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 563 (967)
++.+.++++++++..++++.++||+||++|+|+++ |.+.+..++.+....++||+|+|+++|...|.|
T Consensus 122 ~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v~G~G 189 (614)
T PRK10512 122 IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA------------LREHLLQLPEREHAAQHRFRLAIDRAFTVKGAG 189 (614)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH------------HHHHHHHhhccccCcCCCceEEEEEEeccCCCe
Confidence 77788888888888887777999999999999987 777787777666667799999999999999888
Q ss_pred CCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc---ccCCCCCcccccCCCCccc
Q psy3751 564 SKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE---YLDISRGNMLVSPFKRPVS 640 (967)
Q Consensus 564 ~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~---~~~i~~G~vl~~~~~~~~~ 640 (967)
+|++|+|.+|++++||+|.+.|.+..++|++|++++.++++|.||++|++++.+ ..+++|||+|+++ .++.+
T Consensus 190 ----tVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~-~~~~~ 264 (614)
T PRK10512 190 ----LVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLAD-APPEP 264 (614)
T ss_pred ----EEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCC-CCCcc
Confidence 999999999999999999999999999999999999999999999999999974 4579999999987 45556
Q ss_pred cceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCc
Q psy3751 641 LRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNI 719 (967)
Q Consensus 641 ~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~ 719 (967)
+..+.+. +.. .|+++|+++++|+|+.++.|+|..+ +.+.+++.+++|+++..
T Consensus 265 ~~~~~~~---l~~~~~l~~~~~~~~~~gt~~~~~~i~~l--------------------~~~~~~l~l~~p~~~~~---- 317 (614)
T PRK10512 265 FTRVIVE---LQTHTPLTQWQPLHIHHAASHVTGRVSLL--------------------EDNLAELVLDTPLWLAD---- 317 (614)
T ss_pred ceeEEEE---EcCCccCCCCCEEEEEEcccEEEEEEEEc--------------------CCeEEEEEECCcccccC----
Confidence 6665443 333 6899999999999999999999876 12578999999999988
Q ss_pred cCCccceeecccccccceEEEEEecCCCCc
Q psy3751 720 RSTGSFILIDEITFQTVAAVYIIGAGPGAA 749 (967)
Q Consensus 720 ~~~grfil~d~~~~~~~~~~~~vg~g~g~~ 749 (967)
+.||+||+.++..|+|+|.++..-|...
T Consensus 318 --gdr~ilr~~s~~~tigGg~Vld~~~~~~ 345 (614)
T PRK10512 318 --NDRLVLRDISARNTLAGARVVMLNPPRR 345 (614)
T ss_pred --CCEEEEEeCCCCEEEEEEEEcccCCccc
Confidence 5799999999999999999999766544
No 26
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=5.1e-47 Score=428.96 Aligned_cols=332 Identities=23% Similarity=0.287 Sum_probs=276.7
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee-
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN- 400 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~- 400 (967)
++.+||+++||+|||||||+++|++. .+|++.+|+++|+|+++++..+.
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~------------------------------~~d~~~~e~~rg~Ti~~~~~~~~~ 51 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV------------------------------WTDTHSEELKRGISIRLGYADAEI 51 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe------------------------------ecccCHhHHHcCceeEeccccccc
Confidence 46789999999999999999999750 15888999999999998866543
Q ss_pred -------------c------------CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCc-hhhHHH
Q psy3751 401 -------------T------------PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL-LTQTKR 454 (967)
Q Consensus 401 -------------~------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~-~~~t~~ 454 (967)
+ .+..++++|||||++|.++++.+++.+|++|+|||+++ +. ..|+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~-------g~~~~qt~e 124 (406)
T TIGR03680 52 YKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANE-------PCPQPQTKE 124 (406)
T ss_pred ccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC-------CccccchHH
Confidence 1 13679999999999999999999999999999999998 66 789999
Q ss_pred HHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHH
Q psy3751 455 HSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISL 534 (967)
Q Consensus 455 ~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~ 534 (967)
|+..+..++++++|+|+||+|+++.. ...+..+++..+++.....+++++|+||++|+|+++ |++.
T Consensus 125 ~l~~l~~~gi~~iIVvvNK~Dl~~~~--~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~------------L~e~ 190 (406)
T TIGR03680 125 HLMALEIIGIKNIVIVQNKIDLVSKE--KALENYEEIKEFVKGTVAENAPIIPVSALHNANIDA------------LLEA 190 (406)
T ss_pred HHHHHHHcCCCeEEEEEEccccCCHH--HHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHH------------HHHH
Confidence 99999999998899999999998532 222334455555554433456899999999999987 7777
Q ss_pred hhc-ccCCCcCCCCCceeeEEEeecCCCccC--C--CceEEEEEEEeeeecCCCEEEEecCC------------cEEEEE
Q psy3751 535 LES-LNTNEKIDKKPLRFPVQLVARHCGHIS--K--DFRGYMGRIESGIIKKNDCLIVEPSG------------KKATIK 597 (967)
Q Consensus 535 l~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~--~--~~~v~~G~v~~G~l~~g~~v~i~p~~------------~~~~V~ 597 (967)
|.. ++.+.+..++||+|+|+++|.+.+.+. + .++|++|+|.+|+|++||+|.+.|++ ..++|+
T Consensus 191 L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~ 270 (406)
T TIGR03680 191 IEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEIT 270 (406)
T ss_pred HHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEe
Confidence 776 676767778999999999997665431 1 12689999999999999999999985 247999
Q ss_pred EEEeCccccceeecCCeEEEEEc---c--ccCCCCCcccccCCCCccccceeEEEEEEecc----------ccccCCceE
Q psy3751 598 DIQMLNKSLDMAITGQSVTLIIK---E--YLDISRGNMLVSPFKRPVSLRSINANLCWLSE----------ESLDLRRKY 662 (967)
Q Consensus 598 ~i~~~~~~v~~a~~G~~v~l~l~---~--~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~----------~~i~~g~~~ 662 (967)
+|++++.++++|.||++|+|+++ + ..++.+||+|++++.++..++.|+|++.|+.+ .+|++|+++
T Consensus 271 sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~ 350 (406)
T TIGR03680 271 SLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVL 350 (406)
T ss_pred EEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEE
Confidence 99999999999999999999984 2 36799999999987777788999999999964 689999999
Q ss_pred EEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCccCCccceeecc
Q psy3751 663 LLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILIDE 730 (967)
Q Consensus 663 ~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~~grfil~d~ 730 (967)
++|+|+.+++|+|..+.. + .++++|.+|+|+.. +.||+|..+
T Consensus 351 ~l~~gt~~~~~~v~~~~~------------------~--~~~l~l~~p~~~~~------g~r~~~~~~ 392 (406)
T TIGR03680 351 MLNVGTATTVGVVTSARK------------------D--EIEVKLKRPVCAEE------GDRVAISRR 392 (406)
T ss_pred EEEEccceEEEEEEEcCC------------------c--EEEEEECCcEEcCC------CCEEEEEEe
Confidence 999999999999998631 1 37788999999988 569999543
No 27
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=8.9e-47 Score=425.90 Aligned_cols=334 Identities=25% Similarity=0.312 Sum_probs=277.3
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+++|++ ..+|+.++|+++|+|++.++..+
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~------------------------------~~~d~~~~E~~rg~Ti~~~~~~~ 54 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTG------------------------------VWTDRHSEELKRGITIRLGYADA 54 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhC------------------------------eecccCHhHHhcCcEEEeccccc
Confidence 456789999999999999999999964 02688999999999999886543
Q ss_pred ecC--------------------------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCc-hhhH
Q psy3751 400 NTP--------------------------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL-LTQT 452 (967)
Q Consensus 400 ~~~--------------------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~-~~~t 452 (967)
.+. .+.++|+|||||++|..+++.++..+|++++|||+++ +. ..++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~-------~~~~~~t 127 (411)
T PRK04000 55 TIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE-------PCPQPQT 127 (411)
T ss_pred ccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-------CCCChhH
Confidence 321 2579999999999999999999999999999999998 65 7899
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHH
Q psy3751 453 KRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLI 532 (967)
Q Consensus 453 ~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~ 532 (967)
.+++..+..++++++++|+||+|+++.++ ..+..++++.+++.....+.+++++||++|.|+++ |+
T Consensus 128 ~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~--~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~------------L~ 193 (411)
T PRK04000 128 KEHLMALDIIGIKNIVIVQNKIDLVSKER--ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDA------------LI 193 (411)
T ss_pred HHHHHHHHHcCCCcEEEEEEeeccccchh--HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHH------------HH
Confidence 99999998899888999999999986432 22333445555544333356899999999999987 66
Q ss_pred HHhhc-ccCCCcCCCCCceeeEEEeecCCCccC----CCceEEEEEEEeeeecCCCEEEEecCCc------------EEE
Q psy3751 533 SLLES-LNTNEKIDKKPLRFPVQLVARHCGHIS----KDFRGYMGRIESGIIKKNDCLIVEPSGK------------KAT 595 (967)
Q Consensus 533 ~~l~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~----~~~~v~~G~v~~G~l~~g~~v~i~p~~~------------~~~ 595 (967)
+.|.. ++.+.+..++||+++|+++|++.+.|. ..++|++|+|.+|++++||.|.+.|.++ .++
T Consensus 194 ~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~ 273 (411)
T PRK04000 194 EAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTK 273 (411)
T ss_pred HHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEE
Confidence 66665 676666678999999999998765431 1226899999999999999999999863 579
Q ss_pred EEEEEeCccccceeecCCeEEEEEc---c--ccCCCCCcccccCCCCccccceeEEEEEEecc----------ccccCCc
Q psy3751 596 IKDIQMLNKSLDMAITGQSVTLIIK---E--YLDISRGNMLVSPFKRPVSLRSINANLCWLSE----------ESLDLRR 660 (967)
Q Consensus 596 V~~i~~~~~~v~~a~~G~~v~l~l~---~--~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~----------~~i~~g~ 660 (967)
|++|++++.++++|.|||+|+++++ + ..++++||||++++.++..+++|+|++.|+++ .+|++|+
T Consensus 274 VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~ 353 (411)
T PRK04000 274 IVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGE 353 (411)
T ss_pred EeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCC
Confidence 9999999999999999999999985 2 35799999999998878888999999999985 5899999
Q ss_pred eEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCccCCccceeecc
Q psy3751 661 KYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILIDE 730 (967)
Q Consensus 661 ~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~~grfil~d~ 730 (967)
++++|+|+.+++|+|..|. ++ .+++++.+|+++.+ +.||+|..+
T Consensus 354 ~~~l~~~t~~~~~~i~~i~------------------~~--~~~~~l~~p~~~~~------g~r~~~~~~ 397 (411)
T PRK04000 354 PLMLNVGTATTVGVVTSAR------------------KD--EAEVKLKRPVCAEE------GDRVAISRR 397 (411)
T ss_pred EEEEEEeccEEEEEEEEcC------------------Cc--EEEEEECCcEecCC------CCEEEEEEe
Confidence 9999999999999999872 12 57778999999988 679999443
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-47 Score=403.93 Aligned_cols=339 Identities=26% Similarity=0.360 Sum_probs=290.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
+.|+..||++||||||+.++++ ...|..++|+++|+|+|++++++..+++
T Consensus 1 mii~t~GhidHgkT~L~~altg------------------------------~~~d~l~EekKRG~TiDlg~~y~~~~d~ 50 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTG------------------------------GVTDRLPEEKKRGITIDLGFYYRKLEDG 50 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcc------------------------------cccccchhhhhcCceEeeeeEeccCCCC
Confidence 3589999999999999999986 1268899999999999999999999999
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHH
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFY 484 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~ 484 (967)
.+.|||+|||++|+++|+.++...|+++||||+++ |++.||.||+.++..+|+++.|+|+||+|+++. .+
T Consensus 51 ~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~de-------Gl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r- 120 (447)
T COG3276 51 VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADE-------GLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--AR- 120 (447)
T ss_pred ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCcc-------CcchhhHHHHHHHHhcCCCceEEEEeccccccH--HH-
Confidence 99999999999999999999999999999999999 999999999999999999999999999999953 33
Q ss_pred HHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhccc-CCCcCCCCCceeeEEEeecCCCcc
Q psy3751 485 KRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLN-TNEKIDKKPLRFPVQLVARHCGHI 563 (967)
Q Consensus 485 ~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~v~~~~~~~ 563 (967)
+.+.++++++.+.+++.+++++|+.+|+|+++| .+.|..++ .+++..++||+++|+++|...|+|
T Consensus 121 --~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L------------k~~l~~L~~~~e~d~~~~fri~IDraFtVKGvG 186 (447)
T COG3276 121 --IEQKIKQILADLSLANAKIFKTSAKTGRGIEEL------------KNELIDLLEEIERDEQKPFRIAIDRAFTVKGVG 186 (447)
T ss_pred --HHHHHHHHHhhcccccccccccccccCCCHHHH------------HHHHHHhhhhhhhccCCceEEEEeeEEEecccc
Confidence 334445556666678889999999999999994 44444444 467778899999999999999999
Q ss_pred CCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCCCCcccc
Q psy3751 564 SKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPFKRPVSL 641 (967)
Q Consensus 564 ~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~~~~~~~ 641 (967)
||++|++.+|++++||++++.|.++.++|+|||.++.++++|.||++|+++|++ ..+++||++|+++ .+..++
T Consensus 187 ----TVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~-~~~~v~ 261 (447)
T COG3276 187 ----TVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKP-EPLEVT 261 (447)
T ss_pred ----EEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccC-CCCCcc
Confidence 999999999999999999999999999999999999999999999999999996 4679999999997 455788
Q ss_pred ceeEEEEEEecc--ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCc
Q psy3751 642 RSINANLCWLSE--ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNI 719 (967)
Q Consensus 642 ~~f~a~i~~~~~--~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~ 719 (967)
..|++.+.|... .++.+|..+++|+|+..++|++..+.. + .++.+.+|+....
T Consensus 262 ~~~~~~~~i~~~~~~~l~~~~~~hi~~g~~~~~~~i~~l~~-----------------~----~~l~~~k~i~~~~---- 316 (447)
T COG3276 262 TRLIVELEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPLEK-----------------N----AELNLVKPIALGD---- 316 (447)
T ss_pred eEEEEEEEeccccccccCCCceEEEEEeccccceEeeeccc-----------------c----ceeeeeccccccc----
Confidence 888888887643 789999999999999999999887632 0 4566677766544
Q ss_pred cCCccceeecccccccceEEEEEecCCCCc
Q psy3751 720 RSTGSFILIDEITFQTVAAVYIIGAGPGAA 749 (967)
Q Consensus 720 ~~~grfil~d~~~~~~~~~~~~vg~g~g~~ 749 (967)
.++++|++.+...+.+...++....+-+
T Consensus 317 --~~~l~lr~~~a~~~~~g~rvl~~~~~~~ 344 (447)
T COG3276 317 --NDRLVLRDNSAVIKLAGARVLSLNLPLR 344 (447)
T ss_pred --CceEEEEcccceeeeccceEEecCCCCC
Confidence 4578888776666666555565555433
No 29
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=2.2e-46 Score=438.41 Aligned_cols=335 Identities=27% Similarity=0.408 Sum_probs=286.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
++|+++||+|||||||+++|++. . +|.+++|+++|+|++.++..+.+++.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~------------------------~------~d~~~eE~~rGiTid~~~~~~~~~~~ 50 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI------------------------A------ADRLPEEKKRGMTIDLGFAYFPLPDY 50 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc------------------------c------CcCChhHhcCCceEEeEEEEEEeCCE
Confidence 47999999999999999999861 0 46778899999999999999999889
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHH
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFY 484 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~ 484 (967)
.++|||||||++|.++|+.++..+|++++|||+++ |+++|+.+|+.++..+|++++|+|+||||+++ ++.+
T Consensus 51 ~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~-------G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~--~~~~ 121 (581)
T TIGR00475 51 RLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE-------GVMTQTGEHLAVLDLLGIPHTIVVITKADRVN--EEEI 121 (581)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC--HHHH
Confidence 99999999999999999999999999999999999 88999999999999999998999999999985 4456
Q ss_pred HHHHHHHHHHHHHcCCc-cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeecCCCcc
Q psy3751 485 KRIVYAYKKFAEDIHFQ-NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHI 563 (967)
Q Consensus 485 ~~i~~~~~~~~~~~~~~-~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 563 (967)
+.+.++++.+++..++. +.+++|+||++|.|++++.+ .|.+.++.++.+. .++||+|||+++|...|.|
T Consensus 122 ~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~--------~L~~l~~~~~~~~--~~~p~r~~Id~~f~v~G~G 191 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKK--------ELKNLLESLDIKR--IQKPLRMAIDRAFKVKGAG 191 (581)
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHH--------HHHHHHHhCCCcC--cCCCcEEEEEEEEecCCcE
Confidence 66777888888887764 67999999999999998654 2444555554332 4689999999999999888
Q ss_pred CCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCCCCcccc
Q psy3751 564 SKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPFKRPVSL 641 (967)
Q Consensus 564 ~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~~~~~~~ 641 (967)
+|++|+|.+|++++||+|.++|.++.++|++|+.++.++++|.||++|+++|++ ..+++||++++++.. .+
T Consensus 192 ----tVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~---~~ 264 (581)
T TIGR00475 192 ----TVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPED---PK 264 (581)
T ss_pred ----EEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCC---CC
Confidence 999999999999999999999999999999999999999999999999999985 457999987776532 22
Q ss_pred ceeEEEEEEeccccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCccC
Q psy3751 642 RSINANLCWLSEESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRS 721 (967)
Q Consensus 642 ~~f~a~i~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~ 721 (967)
..+.+.+.. ..++++|+++++|+|+.++.|+|..+.. ..+++.+.+|+++..
T Consensus 265 ~~~~~~~~~--~~~l~~~~~~~~~~gt~~~~~~i~~l~~--------------------~~~~l~l~~P~~~~~------ 316 (581)
T TIGR00475 265 LRVVVKFIA--EVPLLELQPYHIAHGMSVTTGKISLLDK--------------------GIALLTLDAPLILAK------ 316 (581)
T ss_pred ceEEEEEEc--CCccCCCCeEEEEEeceEEEEEEEEccC--------------------cEEEEEECCceecCC------
Confidence 233333222 2589999999999999999999887621 167888999999988
Q ss_pred CccceeecccccccceEEEEEec
Q psy3751 722 TGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 722 ~grfil~d~~~~~~~~~~~~vg~ 744 (967)
+.||++|+ ++..|+|.+.++..
T Consensus 317 gd~~i~r~-~~~~tiggg~vl~~ 338 (581)
T TIGR00475 317 GDKLVLRD-SSGNFLAGARVLEP 338 (581)
T ss_pred CCEEEEEe-CCCEEEeeeEEecC
Confidence 56999999 89999999999987
No 30
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=3.9e-46 Score=382.42 Aligned_cols=359 Identities=21% Similarity=0.296 Sum_probs=311.1
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
.+.+++++|++.||+|||||||++.|+. |..++.. |.+ ..++|..++|.++|.|.++++..
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~Lvt--G~~DDG~-----------G~t------R~~ldv~kHEverGlsa~iS~~v 172 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVT--GRLDDGD-----------GAT------RSYLDVQKHEVERGLSADISLRV 172 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEe--cCCCCCC-----------cch------hhhhhhhhHHHhhccccceeEEE
Confidence 3456889999999999999999999975 4333221 211 23478999999999999998876
Q ss_pred eecC-----------------------CceEEEeeChhhHHHHHHHHhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHH
Q psy3751 399 FNTP-----------------------KRKFIIADTPGHEQYTRNMITGA--STADAVIILIDASKIKFNPSVNLLTQTK 453 (967)
Q Consensus 399 ~~~~-----------------------~~~~~liDtpG~~~~~~~~~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~ 453 (967)
+.++ ++-+.|+||.||+.|+.++++++ ++.|+.+|+|.|++ |++..|+
T Consensus 173 ~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAdd-------G~~~~tk 245 (527)
T COG5258 173 YGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADD-------GVTKMTK 245 (527)
T ss_pred EEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccC-------Ccchhhh
Confidence 6543 35578999999999999999998 78999999999999 9999999
Q ss_pred HHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCC---------------------c-cceEEecccc
Q psy3751 454 RHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF---------------------Q-NINTIPISAL 511 (967)
Q Consensus 454 ~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~-~~~ii~iSa~ 511 (967)
||+.++..+++| +|||++|+|+. ++++++.+.+++..+++..+- + -+|+|.+|+.
T Consensus 246 EHLgi~~a~~lP-viVvvTK~D~~--~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsV 322 (527)
T COG5258 246 EHLGIALAMELP-VIVVVTKIDMV--PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSV 322 (527)
T ss_pred HhhhhhhhhcCC-EEEEEEecccC--cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecc
Confidence 999999999999 99999999998 467889999999998886542 0 3689999999
Q ss_pred CCCcccccccCCCCCCCCcHHHHhhcccCCCc-CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecC
Q psy3751 512 NGDNIISASNNMLWYNGPTLISLLESLNTNEK-IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPS 590 (967)
Q Consensus 512 ~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~-~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~ 590 (967)
+|+|++- |.+++..+|.... ..+.||+|+|+++|+..|+| +|+.|+|.+|.+..||.+.++|.
T Consensus 323 Tg~Gldl------------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVG----tVvsGsV~~G~l~~gd~vllGP~ 386 (527)
T COG5258 323 TGEGLDL------------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVG----TVVSGSVKSGILHVGDTVLLGPF 386 (527)
T ss_pred cCccHHH------------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeE----EEEeeeEEeeeeccCCEEEEccC
Confidence 9999985 7777888877643 57789999999999999999 99999999999999999999997
Q ss_pred C----cEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCCCCccccceeEEEEEEecc-ccccCCceEE
Q psy3751 591 G----KKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPFKRPVSLRSINANLCWLSE-ESLDLRRKYL 663 (967)
Q Consensus 591 ~----~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~-~~i~~g~~~~ 663 (967)
. ..++|+||++|+..+++|.||.++++++++ ...++|||||+.. .+|++.++|+|++.+|.| +.|+.||.++
T Consensus 387 ~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~vl~HPT~I~aGye~v 465 (527)
T COG5258 387 KDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLVLRHPTTIRAGYEPV 465 (527)
T ss_pred CCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEEEeCCcEEecCceee
Confidence 5 578999999999999999999999999996 4469999999986 789999999999999998 7899999999
Q ss_pred EEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeec-CceeeccccCccCCccceeecccccccceEEEEE
Q psy3751 664 LKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIY-EPISVDSYDNIRSTGSFILIDEITFQTVAAVYII 742 (967)
Q Consensus 664 ~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~-~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~v 742 (967)
+|+-|....+++..+ +..+|++||.+.++++|. +|-.++. +.+||+|+ +++.|.+.++
T Consensus 466 ~H~etI~e~~~f~~i------------d~~~L~~GD~g~vr~~fkyrP~~v~e------GQ~fvFRe---GrskgvG~v~ 524 (527)
T COG5258 466 FHYETIREAVYFEEI------------DKGFLMPGDRGVVRMRFKYRPHHVEE------GQKFVFRE---GRSKGVGRVI 524 (527)
T ss_pred eEeeEeeheeEEEEc------------ccccccCCCcceEEEEEEeCchhhcc------CcEEEEec---CCCccceEEe
Confidence 999999999998876 457899999999999996 9999888 56999997 7777777776
Q ss_pred ec
Q psy3751 743 GA 744 (967)
Q Consensus 743 g~ 744 (967)
++
T Consensus 525 ~~ 526 (527)
T COG5258 525 RV 526 (527)
T ss_pred cc
Confidence 53
No 31
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=100.00 E-value=8.2e-43 Score=349.23 Aligned_cols=229 Identities=39% Similarity=0.568 Sum_probs=216.2
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcC-CCceEEEecccccccchhHHHHHHHHHHHHhcCC
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLC-PKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYN 814 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 814 (967)
.|.+|+||+|||||+|||+||.++|++||+|+||..+.++++++. +++..+++++....+...|+++++.+++.+++|+
T Consensus 3 ~GkV~lVGAGPGdp~LLTlka~~~L~~ADvvlyD~LV~~~il~~~~~~a~~i~vGkr~g~~~~~q~eIn~~lv~~a~~G~ 82 (244)
T COG0007 3 PGKVYLVGAGPGDPGLLTLRALRALQEADVVLYDRLVPEEVLALARRDAERIYVGKRPGGHSKPQDEINALLVELAREGK 82 (244)
T ss_pred cceEEEEecCCCChhhhhHHHHHHHhhCCEEEEcCcCCHHHHHhhccCCEEEEecCcCCCCCCCHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999999999999999999999988 5788899999888899999999999999999999
Q ss_pred eEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc-ccccccCCCC
Q psy3751 815 LVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK-NNYLKNIPIS 893 (967)
Q Consensus 815 ~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 893 (967)
.||+|+.|||++|+++.++++.|.++||++||+|||||..++++++|+|+|+++.+.++.++|+|.... -+|..+....
T Consensus 83 ~VVRLKgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~vTgh~~~~~~~w~~la~~~ 162 (244)
T COG0007 83 RVVRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFVTGHDRDGKLDWEALARSV 162 (244)
T ss_pred eEEEecCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEEeCcCCCCCcChHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999997543 3577777789
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCCCC
Q psy3751 894 DTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLK 964 (967)
Q Consensus 894 ~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~~~ 964 (967)
+|+||||+.+++.++++.|.++|+++++|++++++.|+++||++.+||+++.+.. ....+|+||+||++++
T Consensus 163 ~TlVi~Mg~~~l~~i~~~Li~~G~~~~tpvAvi~~gt~~~Qr~~~gtL~~l~~~~~~~~~~~PaiiviG~vv~ 235 (244)
T COG0007 163 GTLVILMGASRLAEIARELIAHGRSPDTPVAVIENGTTPDQRVVVGTLGDLAELAEEAGLTPPALIVIGEVVN 235 (244)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCCCEEEEEcCCCcceEEEEeEHHHHHHHHHhcCCCCCEEEEEcceee
Confidence 9999999999999999999999999999999999999999999999999999764 3488999999999876
No 32
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-39 Score=327.78 Aligned_cols=331 Identities=24% Similarity=0.294 Sum_probs=279.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
++.+||+++||+|||||||+.+|++ -.+|++.+|.+||+||..+|.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG------------------------------vwT~~hseElkRgitIkLGYAd~~i 57 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG------------------------------VWTDRHSEELKRGITIKLGYADAKI 57 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc------------------------------eeeechhHHHhcCcEEEeccccCce
Confidence 5789999999999999999999987 1369999999999999998864221
Q ss_pred --------------------C------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHH
Q psy3751 402 --------------------P------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRH 455 (967)
Q Consensus 402 --------------------~------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~ 455 (967)
. -+.+.|+|+|||+-++.+|++|+...|+++|||+|+++ -.++||+||
T Consensus 58 ~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEp------cPQPQT~EH 131 (415)
T COG5257 58 YKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP------CPQPQTREH 131 (415)
T ss_pred EeCCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCC------CCCCchHHH
Confidence 0 25688999999999999999999999999999999984 578999999
Q ss_pred HHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHh
Q psy3751 456 SIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLL 535 (967)
Q Consensus 456 ~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l 535 (967)
+..+..+|++++|+|-||+|++. .++..+-.+++++|++..-.++.|+||+||..+.|++. |.+++
T Consensus 132 l~AleIigik~iiIvQNKIDlV~--~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDa------------l~e~i 197 (415)
T COG5257 132 LMALEIIGIKNIIIVQNKIDLVS--RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDA------------LIEAI 197 (415)
T ss_pred HHHHhhhccceEEEEecccceec--HHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHH------------HHHHH
Confidence 99999999999999999999994 55556667778888887767789999999999999998 66666
Q ss_pred hc-ccCCCcCCCCCceeeEEEeecCCCccC--CC--ceEEEEEEEeeeecCCCEEEEecCC------------cEEEEEE
Q psy3751 536 ES-LNTNEKIDKKPLRFPVQLVARHCGHIS--KD--FRGYMGRIESGIIKKNDCLIVEPSG------------KKATIKD 598 (967)
Q Consensus 536 ~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~--~~--~~v~~G~v~~G~l~~g~~v~i~p~~------------~~~~V~~ 598 (967)
+. +|.|.++.++|.+|.+...|.++..|- +. +-|+.|.+.+|.+++||+|.+.|+- ...+|.|
T Consensus 198 ~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~S 277 (415)
T COG5257 198 EKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVS 277 (415)
T ss_pred HHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEE
Confidence 54 799999999999999999998664431 11 2478899999999999999999863 1367889
Q ss_pred EEeCccccceeecCCeEEEEEcc-----ccCCCCCcccccCCCCccccceeEEEEEEecc----------ccccCCceEE
Q psy3751 599 IQMLNKSLDMAITGQSVTLIIKE-----YLDISRGNMLVSPFKRPVSLRSINANLCWLSE----------ESLDLRRKYL 663 (967)
Q Consensus 599 i~~~~~~v~~a~~G~~v~l~l~~-----~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~----------~~i~~g~~~~ 663 (967)
|+-.+..+++|.||..+++...- ..|--.|.|+..++..|....+|+.+..+|.. +||+.|...+
T Consensus 278 l~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lm 357 (415)
T COG5257 278 LQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLM 357 (415)
T ss_pred EEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEE
Confidence 99999999999999999997652 33444678888888889999999999998872 4899999999
Q ss_pred EEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCccCCccceee
Q psy3751 664 LKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILI 728 (967)
Q Consensus 664 ~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~~grfil~ 728 (967)
+.+|+...-+.|++... | .+++.|.+|+|.+. +.|++|-
T Consensus 358 l~VGtatT~GvV~~~k~------------------d--~~ev~Lk~Pvcae~------g~rvais 396 (415)
T COG5257 358 LNVGTATTVGVVTSAKK------------------D--EIEVKLKRPVCAEI------GERVAIS 396 (415)
T ss_pred EEeecceeEEEEEEecC------------------c--eEEEEeccceecCC------CCEEEEE
Confidence 99999999999888632 1 47788999999998 4466664
No 33
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-39 Score=312.45 Aligned_cols=224 Identities=35% Similarity=0.529 Sum_probs=201.5
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEE-ecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCC
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYN 814 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 814 (967)
...+|+||+|||||||||+|+.++|++||+|+| .+.++++++++++....+.- ...+.-+++.+.++.+.++||
T Consensus 2 ~~~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~n-----Sa~~tLeeIi~~m~~a~~~Gk 76 (254)
T COG2875 2 AMKVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVN-----SASLTLEEIIDLMVDAVREGK 76 (254)
T ss_pred CceEEEEccCCCCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEe-----cCcCCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999 78999999998854433321 234566778889999999999
Q ss_pred eEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccc----cccccccC
Q psy3751 815 LVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTML----KNNYLKNI 890 (967)
Q Consensus 815 ~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~ 890 (967)
+||+|.+|||++||...+-+++|+++||++|++||||||+||||.+|..||.++.+++++++....+. .+.+..+.
T Consensus 77 ~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~~la 156 (254)
T COG2875 77 DVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLAALA 156 (254)
T ss_pred eEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877653 23566777
Q ss_pred CCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCCCC
Q psy3751 891 PISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLK 964 (967)
Q Consensus 891 ~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~~~ 964 (967)
.++.|+++|.+.+.+.++.+.|.+-||++|+||+|+.++|||||++++|||+++++.. ......++|+||+.++
T Consensus 157 ~~~aTm~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpDe~ii~GTL~dIa~kv~~~~i~rTAlIiVG~~l~ 232 (254)
T COG2875 157 KHGATMVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPDEKIIRGTLEDIAEKVKEAGIRRTALIIVGDVLD 232 (254)
T ss_pred hcCceeEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCcccEEEeeHHHHHHHHHhcCceeEEEEEEccccC
Confidence 8899999999999999999999998899999999999999999999999999999875 4478999999999998
No 34
>KOG0463|consensus
Probab=100.00 E-value=1.2e-39 Score=332.62 Aligned_cols=357 Identities=21% Similarity=0.286 Sum_probs=295.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee---
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN--- 400 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--- 400 (967)
..+|+++|++|+|||||++.|+. +.++.....+..+ +.++++|.+.|.|..++--.+.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTH--geLDnGRG~ARqk-----------------LFRHKHEiESGRTSSVGNDILGFD~ 193 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTH--GELDNGRGAARQK-----------------LFRHKHEIESGRTSSVGNDILGFDV 193 (641)
T ss_pred eEEEEEEecccCCcceeEeeeee--cccccCccHHHHH-----------------HhhhhhhcccCccccccccceeecc
Confidence 36899999999999999999987 3333222222111 4577888888888765432111
Q ss_pred ----------------------cCCceEEEeeChhhHHHHHHHHhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHHHHH
Q psy3751 401 ----------------------TPKRKFIIADTPGHEQYTRNMITGA--STADAVIILIDASKIKFNPSVNLLTQTKRHS 456 (967)
Q Consensus 401 ----------------------~~~~~~~liDtpG~~~~~~~~~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~ 456 (967)
...+-++|||.+||++|+++++-++ ...|..+|+|-|+. |+.+.|+||+
T Consensus 194 ~GNvVNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa-------GIiGmTKEHL 266 (641)
T KOG0463|consen 194 HGNVVNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA-------GIIGMTKEHL 266 (641)
T ss_pred ccccccCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc-------cceeccHHhh
Confidence 1124588999999999999999888 56899999999999 9999999999
Q ss_pred HHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCc-----------------------cceEEeccccCC
Q psy3751 457 IIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQ-----------------------NINTIPISALNG 513 (967)
Q Consensus 457 ~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------~~~ii~iSa~~g 513 (967)
.++..+.+| +.||++|+|.+.. ..+++..+.+..+++.-|+. -+|+|.+|..+|
T Consensus 267 gLALaL~VP-VfvVVTKIDMCPA--NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG 343 (641)
T KOG0463|consen 267 GLALALHVP-VFVVVTKIDMCPA--NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTG 343 (641)
T ss_pred hhhhhhcCc-EEEEEEeeccCcH--HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccC
Confidence 999999998 8889999999964 34566777777788775542 258888999999
Q ss_pred CcccccccCCCCCCCCcHHHHhhcccCC-CcCCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC-
Q psy3751 514 DNIISASNNMLWYNGPTLISLLESLNTN-EKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG- 591 (967)
Q Consensus 514 ~gi~~l~~~~~w~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~- 591 (967)
+|+.- |..+|+-++.. +...+.|..|.|+++|..+|+| +++.|+..+|+++.+|.+.++|..
T Consensus 344 ~NL~L------------LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVG----TvvSGT~L~GtIrLND~LlLGPd~~ 407 (641)
T KOG0463|consen 344 TNLPL------------LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVG----TVVSGTLLSGTIRLNDILLLGPDSN 407 (641)
T ss_pred CChHH------------HHHHHhhcCcccccccCCCcceeecceEecCCcc----eEeecceeeeeEEeccEEEecCCCC
Confidence 99874 44555555432 2345678999999999999999 999999999999999999999975
Q ss_pred ---cEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCCCCccccceeEEEEEEecc-ccccCCceEEEE
Q psy3751 592 ---KKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPFKRPVSLRSINANLCWLSE-ESLDLRRKYLLK 665 (967)
Q Consensus 592 ---~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~ 665 (967)
....||||+..+-+|..+.+||...++|+. ..++++|||++++.-.|..+++|+|+|.+|++ +.|.+.|+.++|
T Consensus 408 G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHPTTIsprYQAMvH 487 (641)
T KOG0463|consen 408 GDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHPTTISPRYQAMVH 487 (641)
T ss_pred CCeeeeehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEEEecCCccCcchhheee
Confidence 467899999999999999999999999985 56899999999998899999999999999998 789999999999
Q ss_pred EeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEee-cCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 666 HSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINI-YEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 666 ~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l-~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
||+.+++|+|.++ +.++|+.||.+.|+|++ .+|.++.+ ..|.++|+ ++|.+.+.+...
T Consensus 488 cGSiRQTAtivsM------------~kdcLRTGDka~V~FrFIkqPEYir~------gqrlVFRE---GRTKAVGti~~~ 546 (641)
T KOG0463|consen 488 CGSIRQTATIVSM------------GKDCLRTGDKAKVQFRFIKQPEYIRP------GQRLVFRE---GRTKAVGTISSV 546 (641)
T ss_pred eccccceeeeeec------------ChhhhhcCCcceEEEEEecCcceecC------CceEEeec---ccceeeeeeccc
Confidence 9999999998876 45899999999999999 45888877 56999987 788888877665
Q ss_pred CC
Q psy3751 745 GP 746 (967)
Q Consensus 745 g~ 746 (967)
-|
T Consensus 547 lp 548 (641)
T KOG0463|consen 547 LP 548 (641)
T ss_pred cc
Confidence 54
No 35
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=9.8e-37 Score=345.03 Aligned_cols=228 Identities=35% Similarity=0.514 Sum_probs=202.3
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcC-CCceEEEecccccccchhHHHHHHHHHHHHhcCCe
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLC-PKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNL 815 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 815 (967)
|.+|+||+|||||++||+||+++|++||+|+||..+.+.++.+. +....++.++....+...++++++.+++.+++|++
T Consensus 3 G~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvydrlv~~~~l~~~~~~~~~i~~gk~~~~~~~~qe~i~~~l~~~a~~Gk~ 82 (474)
T PRK07168 3 GYVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLLNPFFLSYTKQTCELMYCGKMPKNHIMRQEMINAHLLQFAKEGKI 82 (474)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhCCEEEEeCcCCHHHHhhcCCCcEEEeccCcCCCccccHHHHHHHHHHHHhCCCE
Confidence 78999999999999999999999999999999988888877766 34556666776666677788888888899999999
Q ss_pred EEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc----ccccccCC
Q psy3751 816 VVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK----NNYLKNIP 891 (967)
Q Consensus 816 Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 891 (967)
||+|++|||++||++.+++++|.+.|+++||||||||+++|+|++|+||++++.+.++.++|+|.... ..|.. +.
T Consensus 83 VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~~~~~~~~~-l~ 161 (474)
T PRK07168 83 VVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLTDHGKYNS-SH 161 (474)
T ss_pred EEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCccccchhHHH-hc
Confidence 99999999999999999999999999999999999999999999999999999999999999997532 12223 34
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCCCCc
Q psy3751 892 ISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLKS 965 (967)
Q Consensus 892 ~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~~~~ 965 (967)
..+|+||||+..++++|++.|.++|+++++|+++++++|+++|+++.+||+++.+.. ..+.+|+|++||+++.-
T Consensus 162 ~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~~Qri~~~tL~~l~~~~~~~~~~~pavivvG~vv~~ 237 (474)
T PRK07168 162 NSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENISNPSMTIVGDVVSL 237 (474)
T ss_pred CCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEChHhcc
Confidence 567999999999999999999999999999999999999999999999999997643 35789999999998753
No 36
>KOG0461|consensus
Probab=100.00 E-value=2.6e-36 Score=305.52 Aligned_cols=343 Identities=23% Similarity=0.313 Sum_probs=274.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+|++++||+|||||||..+|..-.. ....|+++..++||+|.|.++..+...
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~S--------------------------TaAFDk~pqS~eRgiTLDLGFS~~~v~ 59 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGS--------------------------TAAFDKHPQSTERGITLDLGFSTMTVL 59 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhcc--------------------------chhhccCCcccccceeEeecceeeecc
Confidence 448999999999999999999975111 112588899999999999998776542
Q ss_pred ---------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 403 ---------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 403 ---------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
.-+++++|+|||...++..+.++...|+.++|||+.. |.+.||.|++.+...+-.+ +|||+||
T Consensus 60 ~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~k-------G~QtQtAEcLiig~~~c~k-lvvvink 131 (522)
T KOG0461|consen 60 SPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQK-------GKQTQTAECLIIGELLCKK-LVVVINK 131 (522)
T ss_pred cccccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhc-------ccccccchhhhhhhhhccc-eEEEEec
Confidence 3467999999999999999999999999999999999 9999999999988776655 8999999
Q ss_pred CCccCcC--HHHHHHHHHHHHHHHHHcCCc-cceEEeccccCC----CcccccccCCCCCCCCcHHHHhhc-ccCCCcCC
Q psy3751 474 MDLINYN--QIFYKRIVYAYKKFAEDIHFQ-NINTIPISALNG----DNIISASNNMLWYNGPTLISLLES-LNTNEKID 545 (967)
Q Consensus 474 ~D~~~~~--~~~~~~i~~~~~~~~~~~~~~-~~~ii~iSa~~g----~gi~~l~~~~~w~~~~~L~~~l~~-~~~~~~~~ 545 (967)
+|...+. ....++....+++-++..+++ +.|++++||..| +++.+ |.++|++ +..|.++.
T Consensus 132 id~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~e------------L~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 132 IDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQE------------LKEALESRIFEPKRDE 199 (522)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHH------------HHHHHHHhhcCCCcCC
Confidence 9987653 345666777777778888886 589999999999 56665 6666654 67888899
Q ss_pred CCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEc--ccc
Q psy3751 546 KKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIK--EYL 623 (967)
Q Consensus 546 ~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~--~~~ 623 (967)
+.||.|.|+++|.+.|.| ||.+|+|.+|.++.|+.|.+..-+.+-+||++|+++.++.+|.+|+++++.+. +..
T Consensus 200 ~gpflm~vDHCF~IKGQG----TV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~k 275 (522)
T KOG0461|consen 200 EGPFLMAVDHCFAIKGQG----TVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEK 275 (522)
T ss_pred CCCeEEEeeeeEEeccCc----eEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHH
Confidence 999999999999999988 99999999999999999999999999999999999999999999999999987 344
Q ss_pred CCCCCcccccCCCCccccceeEEEEEEec--cccccCCceEEEEEeeeEEEEEEeeeeeeeecC----CCc--------c
Q psy3751 624 DISRGNMLVSPFKRPVSLRSINANLCWLS--EESLDLRRKYLLKHSTNQILSRILKINALLNIN----TQK--------W 689 (967)
Q Consensus 624 ~i~~G~vl~~~~~~~~~~~~f~a~i~~~~--~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~----~~~--------~ 689 (967)
-++||-+ +.+ ....+....-+++.-+. .++|..-.++++.+|.-+++|.+..+.. .|.. ... .
T Consensus 276 lleRgi~-~~p-g~Lk~~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~d-~d~~~~tf~~~kEye~~E~d 352 (522)
T KOG0461|consen 276 LLERGIC-GPP-GTLKSTKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFKD-TDGTTSTFQLDKEYENGEFD 352 (522)
T ss_pred HHhcccc-CCC-cccceeeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEeec-cCCcccccccchhhhccccc
Confidence 5778843 332 33444444444443222 2678888999999999999998887751 1211 111 1
Q ss_pred CCCccccCCCEEEEEEeecCceeeccccC
Q psy3751 690 CPPKLLDLNDIGCVTINIYEPISVDSYDN 718 (967)
Q Consensus 690 ~~~~~l~~g~~a~v~l~l~~pi~~~~~~~ 718 (967)
.-|..+..+|...+-+++++|+....|++
T Consensus 353 ~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~ 381 (522)
T KOG0461|consen 353 MLPALLAPCDVIQALFSFEKPVFLPEYSN 381 (522)
T ss_pred cChhhcCCchheeeeeeecccccCccccc
Confidence 13666777788888899999998887663
No 37
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.4e-35 Score=343.93 Aligned_cols=278 Identities=22% Similarity=0.245 Sum_probs=227.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
++||+|+||+|||||||+++|++.+|.+.... .. -.+++|+.++|+++|+|+......+.+++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~----------------~v-~~~~~D~~~~ErerGiTI~~~~~~v~~~~ 63 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANE----------------AV-AERVMDSNDLERERGITILAKNTAIRYNG 63 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccc----------------cc-eeecccCchHHHhCCccEEeeeEEEEECC
Confidence 36899999999999999999999877763321 01 12579999999999999999999999999
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF 483 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 483 (967)
.+++|||||||.+|...+.++++.+|+++||||+.+ |++.|+++++..+...++| +|+|+||||+.+.+
T Consensus 64 ~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-------G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a~--- 132 (594)
T TIGR01394 64 TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-------GPMPQTRFVLKKALELGLK-PIVVINKIDRPSAR--- 132 (594)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-------CCcHHHHHHHHHHHHCCCC-EEEEEECCCCCCcC---
Confidence 999999999999999999999999999999999999 8999999999999999998 68899999997543
Q ss_pred HHHHHHHHHHHHHHcCCc----cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeecC
Q psy3751 484 YKRIVYAYKKFAEDIHFQ----NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARH 559 (967)
Q Consensus 484 ~~~i~~~~~~~~~~~~~~----~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~~ 559 (967)
++++.+++..++..++.. .+|++++||++|.+..++.. ..+...+.|..+++.+|.|....+.||+++|.++++.
T Consensus 133 ~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~-~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d 211 (594)
T TIGR01394 133 PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD-PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYD 211 (594)
T ss_pred HHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc-cccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEee
Confidence 345666666666655442 36899999999986544311 0111112244556677888767789999999999999
Q ss_pred CCccCCCceEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEeC----ccccceeecCCeEEEEEccccCCCCCcccc
Q psy3751 560 CGHISKDFRGYMGRIESGIIKKNDCLIVEPSG---KKATIKDIQML----NKSLDMAITGQSVTLIIKEYLDISRGNMLV 632 (967)
Q Consensus 560 ~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~---~~~~V~~i~~~----~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~ 632 (967)
.+.| +++.|||.+|+|++||.|.+.|.+ .+.+|++|+.+ +.++++|.|||+|++.. ..++++||+|+
T Consensus 212 ~~~G----rv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~g--l~~i~~Gdtl~ 285 (594)
T TIGR01394 212 EYLG----RIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAG--LEDINIGETIA 285 (594)
T ss_pred CCCc----eEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeC--CcccCCCCEEe
Confidence 8888 899999999999999999999873 25789999976 45799999999999873 45789999999
Q ss_pred cCCC
Q psy3751 633 SPFK 636 (967)
Q Consensus 633 ~~~~ 636 (967)
+++.
T Consensus 286 ~~~~ 289 (594)
T TIGR01394 286 DPEV 289 (594)
T ss_pred CCCc
Confidence 8754
No 38
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=1.7e-35 Score=314.92 Aligned_cols=231 Identities=43% Similarity=0.655 Sum_probs=195.4
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCC-CceEEEecccccccchhHHHHHHHHHHHHhcCC
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCP-KAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYN 814 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 814 (967)
+|++++||+|||+|++||+||+++|++||+|+++.++.+.++++.+ ....+..++........+++..+.+.+.+.+|+
T Consensus 2 ~g~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 81 (249)
T PRK06136 2 MGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYARKGK 81 (249)
T ss_pred CcEEEEEEECCCChHHHHHHHHHHHhcCCEEEEcCCCCHHHHhhCCCCCEEEeCCCcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 4789999999999999999999999999999998877777777654 333334333322233344555566777888999
Q ss_pred eEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc-----ccccc
Q psy3751 815 LVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN-----NYLKN 889 (967)
Q Consensus 815 ~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~ 889 (967)
+||+|++|||+|||++.+|++++.+.|++++++|||||+++|+|++|+||+..+...++.+.+.|..... .+..+
T Consensus 82 ~V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (249)
T PRK06136 82 VVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEPEVNWSAL 161 (249)
T ss_pred eEEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEEecccCCCccccccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999888788888888765422 23466
Q ss_pred CCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhc--cCCCcEEEEEcCCCCcC
Q psy3751 890 IPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIF--QFEKPVLFMIGKSLKSH 966 (967)
Q Consensus 890 ~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~--~~~~~~vi~vg~~~~~~ 966 (967)
++..+++|||++.+++.++++.|.+.|+++++++++++|+|+|+|++++++++++..... ++.++++|+||+.+..+
T Consensus 162 ~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~~vviig~~~~~~ 240 (249)
T PRK06136 162 ADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIVIGEVVALR 240 (249)
T ss_pred hCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEchhhCcc
Confidence 667799999999999999999999999988999999999999999999999999986543 67899999999987653
No 39
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=100.00 E-value=2e-35 Score=313.04 Aligned_cols=228 Identities=29% Similarity=0.444 Sum_probs=191.2
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEEe-cccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcC
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLYD-ALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKY 813 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 813 (967)
.++.+++||+|||+|++||++|+++|++||+|+++ +...+.++.+.+....... .....++++.+.+.+.+.+|
T Consensus 6 ~~~~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~i~~~i~~~~~~g 80 (257)
T PRK15473 6 DPRCVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSLINTELLDYCPAQAECHD-----SAELHLEQIIDLMEAGVKAG 80 (257)
T ss_pred CCCEEEEEEeCCCChHHhhHHHHHHHHhCCEEEEecccCCHHHHhhcCCCCEEEe-----cCCCCHHHHHHHHHHHHHCC
Confidence 35889999999999999999999999999999997 4556667766543322211 11234566667777888899
Q ss_pred CeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc----cccccc
Q psy3751 814 NLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK----NNYLKN 889 (967)
Q Consensus 814 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~----~~~~~~ 889 (967)
++||+|++|||+|||++.+|++++.+.+++++++|||||+++|+|++|+||+.++...++.+++.|+... ..+..+
T Consensus 81 ~~Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s~hG~~~~~~~~~l~~~ 160 (257)
T PRK15473 81 KTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVPAREQLESF 160 (257)
T ss_pred CeEEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEeecCCCCCCchhhHHHH
Confidence 9999999999999999999999999999999999999999999999999998766666676666665432 346677
Q ss_pred CCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhc--cCCCcEEEEEcCCCCcCC
Q psy3751 890 IPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIF--QFEKPVLFMIGKSLKSHY 967 (967)
Q Consensus 890 ~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~--~~~~~~vi~vg~~~~~~~ 967 (967)
++.+.++|||++.+++.++++.|.+.|+++++++++++|+|+|+|+++.++++++.+... ...+|+||+||+.+...|
T Consensus 161 ~~~~~t~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~~~~~~~~~~~~~ivvG~~~~~~~ 240 (257)
T PRK15473 161 ASHQTSMAIFLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIRKTALILVGNFLGEEY 240 (257)
T ss_pred hcCCCeEEEECCchhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEchhccCCC
Confidence 777889999999999999999999999988999999999999999999999999987543 368999999999886543
No 40
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=100.00 E-value=3.8e-35 Score=312.05 Aligned_cols=232 Identities=37% Similarity=0.563 Sum_probs=196.5
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCC-CceEEEecccccccchhHHHHHHHHHHHHhcC
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCP-KAKHIFVGKRFKKHSIAQYIINRIIVKCAFKY 813 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 813 (967)
..|.+|+||+|||+|++||++|+++|++||+|+++.++.+.++++++ .......++........++++.+.+.+.+.+|
T Consensus 13 ~~g~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 92 (263)
T PLN02625 13 GPGNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFAEAG 92 (263)
T ss_pred CCCEEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeCcCCHHHHHhcCCCCEEEecCCcCCccccCHHHHHHHHHHHHHCC
Confidence 35789999999999999999999999999999999887777887664 33344433322223334566667777888899
Q ss_pred CeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc-----cccc
Q psy3751 814 NLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN-----NYLK 888 (967)
Q Consensus 814 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~-----~~~~ 888 (967)
++||+|++|||+||+++.++++++.+.|++++++|||||+++|+|++|+||++++...++.+++.|.+... .+..
T Consensus 93 ~~Vvvl~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~s~h~~~~~~~~~~~~~~ 172 (263)
T PLN02625 93 KTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREGGTDPLDVAEA 172 (263)
T ss_pred CeEEEEcCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEEecccCCCcccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999998887777888888865422 2344
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCCCCcC
Q psy3751 889 NIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLKSH 966 (967)
Q Consensus 889 ~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~~~~~ 966 (967)
+....+|+|||++.+++.++++.|.+.|+++++++++++|+|+++|+++.++++++.+.. ..+.++++++||+.+..+
T Consensus 173 ~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vviig~~~~~~ 252 (263)
T PLN02625 173 AADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVSPTVIVVGEVVALS 252 (263)
T ss_pred HhCCCCeEEEECchhhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEchhhCcc
Confidence 556678999999999999999999999998899999999999999999999999998765 457899999999988754
No 41
>KOG1143|consensus
Probab=100.00 E-value=7.3e-35 Score=297.69 Aligned_cols=360 Identities=18% Similarity=0.224 Sum_probs=296.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.-.++++++|..|+|||||++.|++.+ ++ +..|+ ..+ -+.++.+|.+.|.|..+++..+.+
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQge--LD-----------nG~Gr--ARl----n~FRh~HEiqsGrTSsis~evlGF 225 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGE--LD-----------NGNGR--ARL----NIFRHPHEIQSGRTSSISNEVLGF 225 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeeccc--cc-----------CCCCe--eee----ehhcchhhhccCcccccchhcccc
Confidence 345789999999999999999998732 11 11222 112 256888999999998776543322
Q ss_pred ---------------------CCceEEEeeChhhHHHHHHHHhhcc--cCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH
Q psy3751 402 ---------------------PKRKFIIADTPGHEQYTRNMITGAS--TADAVIILIDASKIKFNPSVNLLTQTKRHSII 458 (967)
Q Consensus 402 ---------------------~~~~~~liDtpG~~~~~~~~~~~~~--~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~ 458 (967)
..+-++|||.+||.+|.++++.++. ..|.++|||+|.. |+...|+||+.+
T Consensus 226 d~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~-------Gi~~tTrEHLgl 298 (591)
T KOG1143|consen 226 DNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADR-------GITWTTREHLGL 298 (591)
T ss_pred cccccccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCC-------CCccccHHHHHH
Confidence 2355899999999999999999884 5899999999999 999999999999
Q ss_pred HHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCc-----------------------cceEEeccccCCCc
Q psy3751 459 AHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQ-----------------------NINTIPISALNGDN 515 (967)
Q Consensus 459 ~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------~~~ii~iSa~~g~g 515 (967)
+.++++| ++|+++|||+++. .-.+...+++.+++++.|+. -+|++.+|..+|+|
T Consensus 299 ~~AL~iP-fFvlvtK~Dl~~~--~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGeg 375 (591)
T KOG1143|consen 299 IAALNIP-FFVLVTKMDLVDR--QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEG 375 (591)
T ss_pred HHHhCCC-eEEEEEeeccccc--hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccc
Confidence 9999999 8889999999964 34577888888898888762 25889999999999
Q ss_pred ccccccCCCCCCCCcHHHHhhcccCCCc------CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEec
Q psy3751 516 IISASNNMLWYNGPTLISLLESLNTNEK------IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEP 589 (967)
Q Consensus 516 i~~l~~~~~w~~~~~L~~~l~~~~~~~~------~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p 589 (967)
++- |..+|+-+++.-. ....|..|.|+++|+.+.+| .|+.|.+.+|.++.|+.+.++|
T Consensus 376 l~l------------l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG----~VVGG~Ls~G~l~Eg~~~~vGP 439 (591)
T KOG1143|consen 376 LRL------------LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVG----QVVGGMLSEGQLHEGADVLVGP 439 (591)
T ss_pred hhH------------HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCccc----ccccceeeeceeccCceeEeec
Confidence 885 4445554443211 13467789999999999888 8999999999999999999999
Q ss_pred CC----cEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCCCCccccceeEEEEEEecc-ccccCCceE
Q psy3751 590 SG----KKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPFKRPVSLRSINANLCWLSE-ESLDLRRKY 662 (967)
Q Consensus 590 ~~----~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~-~~i~~g~~~ 662 (967)
.. .+.+|-+|+..+.++..+.|||...+.+.+ ...+++|||+..++.+|..+..|+|++.+|.+ +.|..|.+.
T Consensus 440 ~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHaT~i~~GFQ~ 519 (591)
T KOG1143|consen 440 MKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHATYICEGFQA 519 (591)
T ss_pred CCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehhhhhhHhheecceE
Confidence 75 588999999999999999999999999974 45689999999999999999999999998887 789999999
Q ss_pred EEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEee-cCceeeccccCccCCccceeecccccccceEEEE
Q psy3751 663 LLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINI-YEPISVDSYDNIRSTGSFILIDEITFQTVAAVYI 741 (967)
Q Consensus 663 ~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l-~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~ 741 (967)
.+|+|+.+++|.|..|. +.++|..|++|.|.|.+ .+|.++.. +.+.++|+ +.+.|.+.+
T Consensus 520 TVhiGsvrqTAvi~~I~-----------~~d~lrtg~~AvV~f~F~~hPEyir~------G~~ilfRe---G~tKGiG~V 579 (591)
T KOG1143|consen 520 TVHIGSVRQTAVITHID-----------DADCLRTGKWAVVKFCFAYHPEYIRE------GSPILFRE---GKTKGIGEV 579 (591)
T ss_pred EEEEcceeeeeeeeeec-----------ccccccCCceEEEEEEecCCchhccC------CCeeeeec---ccccccceE
Confidence 99999999999998874 46899999999999999 67988877 55788876 778777777
Q ss_pred EecCC
Q psy3751 742 IGAGP 746 (967)
Q Consensus 742 vg~g~ 746 (967)
..+=|
T Consensus 580 t~Vfp 584 (591)
T KOG1143|consen 580 TKVFP 584 (591)
T ss_pred EEEEe
Confidence 65544
No 42
>KOG0462|consensus
Probab=100.00 E-value=1.5e-35 Score=318.77 Aligned_cols=269 Identities=23% Similarity=0.266 Sum_probs=228.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+.++.+|++||.|+|||||||..+|+..+|.++.+..++ .++|+++.|||||||+......+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~------------------q~LDkl~vERERGITIkaQtasi 117 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQE------------------QVLDKLQVERERGITIKAQTASI 117 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchh------------------hhhhhhhhhhhcCcEEEeeeeEE
Confidence 346789999999999999999999999999886654333 35899999999999998877766
Q ss_pred ecCC---ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 400 NTPK---RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 400 ~~~~---~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
.+.+ +.+++||||||.||..++.+.+..||++||||||.+ |++.||...+.++...|.. +|.|+||+|+
T Consensus 118 fy~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~q-------GvqAQT~anf~lAfe~~L~-iIpVlNKIDl 189 (650)
T KOG0462|consen 118 FYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQ-------GVQAQTVANFYLAFEAGLA-IIPVLNKIDL 189 (650)
T ss_pred EEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCc-------CchHHHHHHHHHHHHcCCe-EEEeeeccCC
Confidence 6666 889999999999999999999999999999999999 9999999999999999998 8999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEe
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLV 556 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v 556 (967)
..++.+ .+..++.+++ ++...+++.+||++|.|+.++ |...++.+|+|....++|||+.+.+.
T Consensus 190 p~adpe---~V~~q~~~lF---~~~~~~~i~vSAK~G~~v~~l-----------L~AII~rVPpP~~~~d~plr~Lifds 252 (650)
T KOG0462|consen 190 PSADPE---RVENQLFELF---DIPPAEVIYVSAKTGLNVEEL-----------LEAIIRRVPPPKGIRDAPLRMLIFDS 252 (650)
T ss_pred CCCCHH---HHHHHHHHHh---cCCccceEEEEeccCccHHHH-----------HHHHHhhCCCCCCCCCcchHHHhhhh
Confidence 987764 4555555544 555558899999999999985 66788999999999999999999999
Q ss_pred ecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCcc---ccceeecCCeEEEEE--ccccCCCCCccc
Q psy3751 557 ARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNK---SLDMAITGQSVTLII--KEYLDISRGNML 631 (967)
Q Consensus 557 ~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~---~v~~a~~G~~v~l~l--~~~~~i~~G~vl 631 (967)
++..+.| .+..++|..|.+++||+|....+++...|+.+...+. ++....+||...|.. ++..+...||+|
T Consensus 253 ~yD~y~G----~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi 328 (650)
T KOG0462|consen 253 EYDEYRG----VIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTI 328 (650)
T ss_pred hhhhhcc----eEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEeccccccccccccee
Confidence 9888877 7899999999999999999999998888888776654 455666666555543 345667889999
Q ss_pred ccCC
Q psy3751 632 VSPF 635 (967)
Q Consensus 632 ~~~~ 635 (967)
+...
T Consensus 329 ~~~~ 332 (650)
T KOG0462|consen 329 AHKS 332 (650)
T ss_pred eecc
Confidence 9864
No 43
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=304.78 Aligned_cols=280 Identities=24% Similarity=0.272 Sum_probs=232.0
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.+.+||+||.|+|||||||+..|+.++|.+.+++-- -..+||+...|++|||||-..-..+.+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v-----------------~ERvMDSnDlEkERGITILaKnTav~~ 65 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV-----------------AERVMDSNDLEKERGITILAKNTAVNY 65 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccch-----------------hhhhcCccchhhhcCcEEEeccceeec
Confidence 467899999999999999999999999987543210 123589999999999999888888999
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
++.+|+++|||||.||-.+..+.++..|.++|+|||.+ |.++||+..+..+..+|.++ |||+||+|..+.+.
T Consensus 66 ~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-------GpMPQTrFVlkKAl~~gL~P-IVVvNKiDrp~Arp 137 (603)
T COG1217 66 NGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-------GPMPQTRFVLKKALALGLKP-IVVINKIDRPDARP 137 (603)
T ss_pred CCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-------CCCCchhhhHHHHHHcCCCc-EEEEeCCCCCCCCH
Confidence 99999999999999999999999999999999999999 99999999999999999985 67799999998754
Q ss_pred HHHHHHHHHHHHHHHHcCCc----cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEee
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQ----NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~----~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~ 557 (967)
+++.+++-.++-.++.. +.|++..||+.|.--.++.+. .-...|.+..+++++|.|..+.+.||.|.+....
T Consensus 138 ---~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~-~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ld 213 (603)
T COG1217 138 ---DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDE-ADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLD 213 (603)
T ss_pred ---HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccc-ccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeec
Confidence 45666666676666643 569999999999754433211 1112233445678899999888999999999999
Q ss_pred cCCCccCCCceEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEeCcc----ccceeecCCeEEEEEccccCCCCCcc
Q psy3751 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG---KKATIKDIQMLNK----SLDMAITGQSVTLIIKEYLDISRGNM 630 (967)
Q Consensus 558 ~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~---~~~~V~~i~~~~~----~v~~a~~G~~v~l~l~~~~~i~~G~v 630 (967)
+..+.| ++..|||.+|++++||.|.+...+ ...+|..+.-|.+ ++++|.|||+|+++.-. ++..|++
T Consensus 214 yn~y~G----rIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~--~~~igdT 287 (603)
T COG1217 214 YNSYVG----RIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLE--DINIGDT 287 (603)
T ss_pred cccccc----eeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcc--ccccccc
Confidence 999888 899999999999999999987654 4578888887654 78999999999998764 4666999
Q ss_pred cccCCC
Q psy3751 631 LVSPFK 636 (967)
Q Consensus 631 l~~~~~ 636 (967)
+|+++.
T Consensus 288 i~d~~~ 293 (603)
T COG1217 288 ICDPDN 293 (603)
T ss_pred ccCCCC
Confidence 999754
No 44
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=100.00 E-value=1.3e-34 Score=305.93 Aligned_cols=226 Identities=43% Similarity=0.611 Sum_probs=192.2
Q ss_pred EEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCC-CceEEEecccccccchhHHHHHHHHHHHHhcCCeEE
Q psy3751 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCP-KAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVV 817 (967)
Q Consensus 739 ~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv 817 (967)
+|+||+|||+|++||+||+++|++||+|+++.++.+.++++.+ ....+..++........++++.+.+.+.+.+|++|+
T Consensus 2 i~iVG~GpG~~~~lT~~a~~~l~~advI~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~ 81 (236)
T TIGR01469 2 VYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKKVV 81 (236)
T ss_pred EEEEecCCCChHHhHHHHHHHHHhCCEEEEeCCCCHHHHhhCCCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 6999999999999999999999999999999888888887764 334444443332333345566666777788999999
Q ss_pred EEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc----cccccCCCC
Q psy3751 818 RLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN----NYLKNIPIS 893 (967)
Q Consensus 818 ~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 893 (967)
+|++|||+|||++.++++++.+.+++++++|||||+++|+|++|+||+.++.+.++.+.+.|..+.. .+..++...
T Consensus 82 ~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 161 (236)
T TIGR01469 82 RLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEVDWEALAKGA 161 (236)
T ss_pred EEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcccCCCcccccCHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998776667777777765432 266666677
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCCCC
Q psy3751 894 DTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLK 964 (967)
Q Consensus 894 ~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~~~ 964 (967)
+|+|+|++.+++.++++.|.+.|+++++++++++|+|+++|+++.++++++.+.. ..+++++|++||+.+.
T Consensus 162 ~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~~vvivg~~~~ 234 (236)
T TIGR01469 162 GTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVIGEVVA 234 (236)
T ss_pred CeEEEECCHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEEcceec
Confidence 8999999999999999999999998899999999999999999999999998653 4578999999999764
No 45
>KOG0052|consensus
Probab=100.00 E-value=3.1e-36 Score=316.91 Aligned_cols=356 Identities=28% Similarity=0.433 Sum_probs=305.0
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+.+..+|++++||+++||||+.. +.++.++.+.++++.+++..+++ ++|.++|++|++..|+++|++|+.....+
T Consensus 3 ~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~k--gsf~~a~~~dk~~ae~~r~i~I~~~l~~~ 77 (391)
T KOG0052|consen 3 KEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGK--GSFKYAWVLDKLKAERERGITIDIALWKF 77 (391)
T ss_pred CcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhcc--ceeeeeeeechhhhccccceEEEEEeecc
Confidence 45678999999999999999998 78899999999999999999998 89999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC-
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN- 478 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~- 478 (967)
++..+.++++|.|||.+|+++|+.+.++||.++++|.+.-++||+.+...+|+++|.+++..+|+.++|+.+||||...
T Consensus 78 ~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 78 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred cceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCC
Confidence 9999999999999999999999999999999999999987899999999999999999999999999999999999765
Q ss_pred -cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEee
Q psy3751 479 -YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557 (967)
Q Consensus 479 -~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~ 557 (967)
+++.++.++.+..+...+..++ +.. .. .++++
T Consensus 158 ~~s~~r~~ei~k~~~~~~~~~g~--------------n~~---------------~~------------------~~~~~ 190 (391)
T KOG0052|consen 158 PYSEARYEEIKKEVSSYIKKIGY--------------NPA---------------AV------------------LQDVY 190 (391)
T ss_pred Cccccchhhhheeeeeeeecccc--------------CCh---------------hh------------------hccce
Confidence 4555555543333222222221 111 00 23344
Q ss_pred cCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccC-
Q psy3751 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSP- 634 (967)
Q Consensus 558 ~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~- 634 (967)
...+. | +..|.++.++.+...|.....++++..+++....++.+|++|+++..+ ..++.+|+++.+.
T Consensus 191 ~~~g~---------~-~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK 260 (391)
T KOG0052|consen 191 KIGGI---------G-VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSK 260 (391)
T ss_pred eecce---------e-eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccc
Confidence 43322 1 678889999999998888888999999999988899999999999885 5678899998885
Q ss_pred CCCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecCce
Q psy3751 635 FKRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPI 711 (967)
Q Consensus 635 ~~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~pi 711 (967)
+.|+.....|.+++.++++ ..+..||.+++.|++.++.||+.+|..++|..+++.. .|++++.++.+.+.+.|.+|+
T Consensus 261 ~~p~~~~~g~t~qviilnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~ 340 (391)
T KOG0052|consen 261 NDPPVEAAGFTAQVIILNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPL 340 (391)
T ss_pred cCCccccccceeeEEEecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCcc
Confidence 4566777889999999998 7899999999999999999999999999999887655 689999999999999999999
Q ss_pred eeccccCccCCccceeecccccccceEE
Q psy3751 712 SVDSYDNIRSTGSFILIDEITFQTVAAV 739 (967)
Q Consensus 712 ~~~~~~~~~~~grfil~d~~~~~~~~~~ 739 (967)
+++.+++++.+|||.+||+ .++++.+
T Consensus 341 ~ve~~~~~~~l~rfav~d~--~~tvavg 366 (391)
T KOG0052|consen 341 CVESFSDYVPLGRFAVRDM--RQTVAVG 366 (391)
T ss_pred ccccccccccccchhhhhh--hcccccc
Confidence 9999999999999999995 5555433
No 46
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=100.00 E-value=1.2e-34 Score=304.55 Aligned_cols=221 Identities=31% Similarity=0.500 Sum_probs=187.4
Q ss_pred EEEEecCCCCcccccHHHHhccccccEEEEe-cccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCeEE
Q psy3751 739 VYIIGAGPGAADLITVRGARLLRKADVVLYD-ALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVV 817 (967)
Q Consensus 739 ~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv 817 (967)
+|+||+|||+|++||+||+++|++||+|+|+ +++...++...+....... .....++++.+.+.+.+.+|++||
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~g~~V~ 75 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSLVPPELLAWCRPGAEVVN-----SAGMSLEEIVDIMSDAHREGKLVV 75 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhCCCCCEEEE-----cCCCCHHHHHHHHHHHHHCCCeEE
Confidence 4899999999999999999999999999995 4566666665533222221 112345666777888889999999
Q ss_pred EEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc----ccccccCCCC
Q psy3751 818 RLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK----NNYLKNIPIS 893 (967)
Q Consensus 818 ~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 893 (967)
+|++|||+|||++.++++++++.|++++++|||||+++|+|++|+||+.++...++.+.+.|.+.. +.+..++..+
T Consensus 76 ~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~ 155 (229)
T TIGR01465 76 RLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMPEGEKLADLAKHG 155 (229)
T ss_pred EEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCCChHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999988888888777765432 2355666677
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhc--cCCCcEEEEEcCCCC
Q psy3751 894 DTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIF--QFEKPVLFMIGKSLK 964 (967)
Q Consensus 894 ~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~--~~~~~~vi~vg~~~~ 964 (967)
.++++|++.+++.++++.|.+.|+++++++++++|+|+++|+++.++++++.+... ..++|+++++|++++
T Consensus 156 ~~~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~~~~ivvg~~~~ 228 (229)
T TIGR01465 156 ATMAIFLSAHILDKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGTLADLADLVREEGIYRTTLILVGPALD 228 (229)
T ss_pred CeEEEECcHHHHHHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEECcccC
Confidence 89999999999999999999999988999999999999999999999999987543 468999999999875
No 47
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=100.00 E-value=1.3e-35 Score=305.36 Aligned_cols=191 Identities=20% Similarity=0.280 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHcC-CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhC--CcEEEE
Q psy3751 24 SEAIHIMREVSAEC-NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLG--ETLIVR 100 (967)
Q Consensus 24 ~~a~~~i~~~~~~~-~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~g--i~i~~~ 100 (967)
..+.++++++++.+ ++++++|||||||+|+|||+.++.. ++++++|+|||++||||++|++++.++|+ +++.+.
T Consensus 11 ~~~~~~l~~~~~~~~~~~~~s~S~Gkds~VlL~l~~~~~~---~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~ 87 (226)
T TIGR02057 11 LTPQEIIAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISE---PMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKY 87 (226)
T ss_pred CCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEe
Confidence 46778889888876 5689999999999999999999852 47999999999999999999999999999 556555
Q ss_pred ecchhhhhcccccC----CCCcccchh-hcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCc
Q psy3751 101 SVEDSIMKGTVRLR----KPNTDSRNA-AQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 101 ~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p 175 (967)
.+...........+ ...+..||. +|..|+.+++++++.++|++|.|++||..|+.++.++.+..
T Consensus 88 ~~~~~~~~~~~~~G~~~~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~Ra~~~~~~~d~~----------- 156 (226)
T TIGR02057 88 DGCESEADFEAKYGKLLWQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGSARANLPVIEIDEQ----------- 156 (226)
T ss_pred CCchhHHHHHHhcCCCccccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCccccCCccccccCC-----------
Confidence 55443322111111 112344555 55566777777778889999999999999999888875442
Q ss_pred cccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEEE
Q psy3751 176 ELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVRF 255 (967)
Q Consensus 176 ~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~ 255 (967)
++.++++||++||+.|||.|+.+++||||||| ..+|
T Consensus 157 ------------~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~npLY--------------------------------~~GY 192 (226)
T TIGR02057 157 ------------NGILKVNPLIDWTFEQVYQYLDAHNVPYNPLL--------------------------------DQGY 192 (226)
T ss_pred ------------CCeEEEeehhhCCHHHHHHHHHHcCCCCCchh--------------------------------hcCC
Confidence 23589999999999999999999999999999 6899
Q ss_pred eccccccccccccCCcC
Q psy3751 256 RTVGDILCTCPILSNAT 272 (967)
Q Consensus 256 ~~~gc~~~~~~v~s~~~ 272 (967)
.|+||++||+|+..+++
T Consensus 193 ~siGc~~cT~~v~~~~~ 209 (226)
T TIGR02057 193 RSIGDYHSTRKVKEGED 209 (226)
T ss_pred CCCCCCCcCCCCCCCCC
Confidence 99999999999988754
No 48
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8.3e-35 Score=306.30 Aligned_cols=216 Identities=40% Similarity=0.637 Sum_probs=175.7
Q ss_pred HHHHHHHHH-HHHHHHHHHcCCCc-EEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC
Q psy3751 18 YLDWLESEA-IHIMREVSAECNNP-VLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE 95 (967)
Q Consensus 18 ~l~~~~~~a-~~~i~~~~~~~~~i-~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi 95 (967)
.++.+++.+ .++++++++.++.. +++|||||||+|+|||+.+++. +++++|+|||++||||++|+++++++||+
T Consensus 18 ~~~~le~~~~~~i~~~~~~~~~~~~~~~~S~Gkds~V~l~L~~k~~~----~~~vif~DTg~~f~Et~~~~d~~~~~~~~ 93 (261)
T COG0175 18 LLDKLEAESPIEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFP----DFPVIFLDTGYHFPETYEFRDRLAEEYGL 93 (261)
T ss_pred HHHHHHhcCHHHHHHHHHHHcCCCeEEEecCchhHHHHHHHHHHhcC----CCcEEEEeCCCcCHHHHHHHHHHHHHcCC
Confidence 466667666 88888888888776 8999999999999999999965 49999999999999999999999999999
Q ss_pred cEEEEecchhhhhc---ccccCCCCccc-chh-hcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCC
Q psy3751 96 TLIVRSVEDSIMKG---TVRLRKPNTDS-RNA-AQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNP 170 (967)
Q Consensus 96 ~i~~~~~~~~~~~~---~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~ 170 (967)
++.++.+....+.. ....+.+.... ||. +|..++.+++.+++.++|++|.|+|||.+|+.+++++.+..++
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~Rak~~~~~~~~~~~---- 169 (261)
T COG0175 94 DLKVYRPDDEVAEGEKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPTRAKLPVVSFDSEFG---- 169 (261)
T ss_pred eEEEecCccchhhhhhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEecccccccccccCceeccccCcC----
Confidence 99999998887776 44555554222 444 5667788888888879999999999999999999999776532
Q ss_pred CCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCcccee
Q psy3751 171 KSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIEN 250 (967)
Q Consensus 171 ~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~ 250 (967)
+.++++||++||..|||.||..+++||||||
T Consensus 170 ------------------~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~npLy------------------------------- 200 (261)
T COG0175 170 ------------------ESIRVNPLADWTELDVWLYILANNLPYNPLY------------------------------- 200 (261)
T ss_pred ------------------CeEEEcchhcCCHHHHHHHHHHhCCCCCcHH-------------------------------
Confidence 2589999999999999999999999999999
Q ss_pred eeEEEeccccccccccccCCcCChHHHHHhhhhhhhhhhcc
Q psy3751 251 LMVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGA 291 (967)
Q Consensus 251 ~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~ 291 (967)
..+|.|.|||+||.++.+......+..-.......+|.+.
T Consensus 201 -~~Gy~siGC~~Ct~~~~~~~~~~r~~rw~~~~~~~~E~g~ 240 (261)
T COG0175 201 -DQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGL 240 (261)
T ss_pred -hccCCccCcccCCCcCccccccHHHHhhccccchhhhhcc
Confidence 5789999999999999983333333222222223555544
No 49
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=4.8e-34 Score=294.71 Aligned_cols=208 Identities=62% Similarity=0.976 Sum_probs=189.2
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++||+|||||||+++|++.++.+..+.+.++.++....+. +.+++.+++|..+.|+++|+|++.....+++++.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGG--EPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CCcceeeeccCChhhhcCCcCeecceeEEecCCce
Confidence 5899999999999999999999999998888888766655544 77889999999999999999999999999999999
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYK 485 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~ 485 (967)
++|+|||||.+|...+..++..+|++|+|||+++ ++..++.+++.++...+.+++|+|+||+|+.++++..++
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~-------~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARK-------GVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC-------CccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHH
Confidence 9999999999999999999999999999999998 788888888888888888878989999999877777778
Q ss_pred HHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCC
Q psy3751 486 RIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNE 542 (967)
Q Consensus 486 ~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~ 542 (967)
.+..+++.+++.+++...+++++||++|.|+.+.+..++||.|++|+++|+.+++++
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~~~~~~~~ 208 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSRSENMPWYSGPTLLEHLETVPIAS 208 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHHhcCCCCC
Confidence 888889999999887667899999999999999999999999999999999998763
No 50
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-33 Score=299.48 Aligned_cols=310 Identities=22% Similarity=0.260 Sum_probs=254.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..+.++|+.|+.|.|||||||..+|+..++.++++++++ .++|+...||+|||||......+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~------------------Q~LDsMdiERERGITIKaq~v~l 66 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRA------------------QVLDSMDIERERGITIKAQAVRL 66 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHH------------------HhhhhhhhHhhcCceEEeeEEEE
Confidence 456789999999999999999999999999999888765 34799999999999998776655
Q ss_pred ec-----CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 400 NT-----PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 400 ~~-----~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
.+ +.+.++|||||||.||..++.+++..|.+++|||||++ |+..||.....++-..+.. +|-|+||+
T Consensus 67 ~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQ-------GveAQTlAN~YlAle~~Le-IiPViNKI 138 (603)
T COG0481 67 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ-------GVEAQTLANVYLALENNLE-IIPVLNKI 138 (603)
T ss_pred EEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECcc-------chHHHHHHHHHHHHHcCcE-EEEeeecc
Confidence 44 23778999999999999999999999999999999999 9999999999999988887 89999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEE
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQ 554 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 554 (967)
|+...+.+ .++.++++. +|++....+.+||++|.|++++ |...++.+|+|..+.++|++..+.
T Consensus 139 DLP~Adpe---rvk~eIe~~---iGid~~dav~~SAKtG~gI~~i-----------Le~Iv~~iP~P~g~~~~pLkALif 201 (603)
T COG0481 139 DLPAADPE---RVKQEIEDI---IGIDASDAVLVSAKTGIGIEDV-----------LEAIVEKIPPPKGDPDAPLKALIF 201 (603)
T ss_pred cCCCCCHH---HHHHHHHHH---hCCCcchheeEecccCCCHHHH-----------HHHHHhhCCCCCCCCCCcceEEEE
Confidence 99988765 445555554 4777667899999999999995 667888999999999999999999
Q ss_pred EeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCcc---ccceeecCCeEEEE--EccccCCCCCc
Q psy3751 555 LVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNK---SLDMAITGQSVTLI--IKEYLDISRGN 629 (967)
Q Consensus 555 ~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~---~v~~a~~G~~v~l~--l~~~~~i~~G~ 629 (967)
+.++....| .++.-||..|++++||+|.+..++++..|..+.++.. +.++..+|+...+. +++..+.+.||
T Consensus 202 DS~yD~Y~G----Vv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGD 277 (603)
T COG0481 202 DSWYDNYLG----VVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGD 277 (603)
T ss_pred eccccccce----EEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCceeEEEEeeeecccCcccc
Confidence 999888887 6788999999999999999999999999999888764 57889999988764 56778899999
Q ss_pred ccccCCCCccccceeEEEEEEeccccccCCc---eEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEE
Q psy3751 630 MLVSPFKRPVSLRSINANLCWLSEESLDLRR---KYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGC 702 (967)
Q Consensus 630 vl~~~~~~~~~~~~f~a~i~~~~~~~i~~g~---~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~ 702 (967)
++...++|.. +| .+|+ ++++++|. +++|.++.+.. +-..|..||.+.
T Consensus 278 TiT~~~~p~~--------------e~-LpGfk~~~P~Vf~Gl-----------yPid~~dye~LrdAleKL~LNDasl 329 (603)
T COG0481 278 TITLASNPAT--------------EP-LPGFKEVKPMVFAGL-----------YPVDSDDYEDLRDALEKLQLNDASL 329 (603)
T ss_pred eEeccCCCcc--------------cc-CCCCCcCCceEEEee-----------cccChhHHHHHHHHHHhccccccee
Confidence 9986543211 11 1333 46777764 44555554433 345667777553
No 51
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=5.7e-34 Score=296.46 Aligned_cols=214 Identities=37% Similarity=0.617 Sum_probs=194.1
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++||+|||||||+++|++..|.++...++++.+++...|. .++.+++++|...+|+++|+|++.....+++.+.+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~--~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGK--GSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCC--cchhHHhhhcCCHHHhhCccCeecceEEEeeCCeE
Confidence 6899999999999999999999999998888888887777776 46788899999999999999999999999999999
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC--cCHHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN--YNQIF 483 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~--~~~~~ 483 (967)
++++|||||.+|...++.+++.+|++|+|||+.++.++..++...|+.+++..+..++++++|+|+||||+.. +++..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHH
Confidence 9999999999999999999999999999999999766666678889999999888889888999999999983 45677
Q ss_pred HHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCC
Q psy3751 484 YKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTN 541 (967)
Q Consensus 484 ~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~ 541 (967)
++++.++++.+++.++++ +++++|+||++|.|+++.+++++||+|++|++.|+.+.++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCCccCCcHHHHHhCCCCC
Confidence 888999998888888764 5789999999999999999999999999999999988654
No 52
>PRK10637 cysG siroheme synthase; Provisional
Probab=100.00 E-value=1.6e-33 Score=322.63 Aligned_cols=232 Identities=37% Similarity=0.550 Sum_probs=199.6
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCC-CceEEEecccccccchhHHHHHHHHHHHHhcC
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCP-KAKHIFVGKRFKKHSIAQYIINRIIVKCAFKY 813 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 813 (967)
..|.+++||+|||+|++||++|+++|++||+|+++.++.+.++.+++ .+..+...+....+...++++.+.+.+.+.+|
T Consensus 214 ~~g~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G 293 (457)
T PRK10637 214 HRGEVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKG 293 (457)
T ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHHcCCEEEECCCCCHHHHhhcccCCEEEEcCCCCCCCCcCHHHHHHHHHHHHhCC
Confidence 35889999999999999999999999999999999999888877653 44444433322223344677777788888999
Q ss_pred CeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc--cccccCC
Q psy3751 814 NLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN--NYLKNIP 891 (967)
Q Consensus 814 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 891 (967)
++||+|++|||+|||++.+|++++.+.|++++++|||||+++|+|++|+||+.++...++.+++.|..... .+..+.+
T Consensus 294 ~~Vv~L~sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vis~h~~~~~~~~~~~l~~ 373 (457)
T PRK10637 294 KRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAA 373 (457)
T ss_pred CEEEEEeCCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEEeCccCCCCccCHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999888888888888864332 3445667
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcCCCCcC
Q psy3751 892 ISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLKSH 966 (967)
Q Consensus 892 ~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~~~~~~ 966 (967)
..+|+||||+.+++.++++.|.+.|+++++++++++|+|+|+|+++.+|++++.+...+...|+|+++|+++..+
T Consensus 374 ~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~~~~~~~~~~viiig~~~~~~ 448 (457)
T PRK10637 374 EKQTLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSVTQRVVSGTLTQLGELAQQVNSPSLIIVGRVVGLR 448 (457)
T ss_pred CCCeEEEECCHhhHHHHHHHHHhcCCCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHHhcCCCCEEEEEChhhchh
Confidence 789999999999999999999999998899999999999999999999999998655567899999999987643
No 53
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=323.77 Aligned_cols=279 Identities=21% Similarity=0.228 Sum_probs=225.7
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
.++||+|+||+|||||||+++|++..|.+.... . .-.+++|+.+.|+++|+|+......+.++
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~------------~-----~~~~v~D~~~~E~erGiTi~~~~~~i~~~ 66 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRA------------E-----TQERVMDSNDLEKERGITILAKNTAIKWN 66 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccc------------c-----cceeeeccccccccCceEEEEEEEEEecC
Confidence 578999999999999999999998777663321 0 01267999999999999999999999999
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
+.++++||||||.+|...+..+++.+|++|+|||+.+ |++.|++.++..+...+++ .|||+||||+.+.+
T Consensus 67 ~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~-------G~~~qt~~~l~~a~~~gip-~IVviNKiD~~~a~-- 136 (607)
T PRK10218 67 DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFD-------GPMPQTRFVTKKAFAYGLK-PIVVINKVDRPGAR-- 136 (607)
T ss_pred CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEeccc-------CccHHHHHHHHHHHHcCCC-EEEEEECcCCCCCc--
Confidence 9999999999999999999999999999999999999 8999999999999999998 57899999997643
Q ss_pred HHHHHHHHHHHHHHHcCCc----cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeec
Q psy3751 483 FYKRIVYAYKKFAEDIHFQ----NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVAR 558 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~----~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~ 558 (967)
++++.+++..++..++.. ++|++++||++|.|..++... .....+.|..+++.+|.|....++||+++|.++++
T Consensus 137 -~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~-~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~ 214 (607)
T PRK10218 137 -PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDM-AEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDY 214 (607)
T ss_pred -hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcccc-ccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEe
Confidence 345566666666544432 478999999999975443210 00000113455667888877778999999999999
Q ss_pred CCCccCCCceEEEEEEEeeeecCCCEEEEecC-Cc--EEEEEEEEeC----ccccceeecCCeEEEEEccccCCCCCccc
Q psy3751 559 HCGHISKDFRGYMGRIESGIIKKNDCLIVEPS-GK--KATIKDIQML----NKSLDMAITGQSVTLIIKEYLDISRGNML 631 (967)
Q Consensus 559 ~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~-~~--~~~V~~i~~~----~~~v~~a~~G~~v~l~l~~~~~i~~G~vl 631 (967)
..+.| ++++|||.+|+|+.||.|.+.+. +. +.+|++|..+ +.++++|.|||+|++.. ..++..||+|
T Consensus 215 d~~~G----~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~g--l~~~~~GdTl 288 (607)
T PRK10218 215 NSYVG----VIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITG--LGELNISDTV 288 (607)
T ss_pred cCCCc----EEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEEC--ccccccCcEE
Confidence 88888 89999999999999999999876 43 5778888755 45799999999999875 3457889999
Q ss_pred ccCCC
Q psy3751 632 VSPFK 636 (967)
Q Consensus 632 ~~~~~ 636 (967)
++++.
T Consensus 289 ~~~~~ 293 (607)
T PRK10218 289 CDTQN 293 (607)
T ss_pred ecCCC
Confidence 88643
No 54
>KOG1527|consensus
Probab=100.00 E-value=3.4e-34 Score=289.28 Aligned_cols=231 Identities=30% Similarity=0.472 Sum_probs=210.3
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCC-CceEEEecccccccchhHHHHHHHHHHHHhcC
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCP-KAKHIFVGKRFKKHSIAQYIINRIIVKCAFKY 813 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 813 (967)
-.|.+++||.|||+|++||++|+++|++||++++|..+.++++++.+ ....++.++....+..+|+++.+...+.+.+|
T Consensus 254 k~G~i~LvGsGPGsp~lLT~~A~~~I~sAD~~LaDkLVp~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l~~G 333 (506)
T KOG1527|consen 254 KLGDIYLVGSGPGSPELLTLKAVRVIQSADLLLADKLVPNAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFLEAG 333 (506)
T ss_pred ccCcEEEEccCCCChhheeHHHHHHHhhcceehhhhcccHHHHhhcCCCCceEEeecCCCchhHHHHHHHHHHHHHHhCC
Confidence 34778999999999999999999999999999999999999999985 55566777788888899999999999999999
Q ss_pred CeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc-cccccCCC
Q psy3751 814 NLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN-NYLKNIPI 892 (967)
Q Consensus 814 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 892 (967)
..||+|+.|||.+|+++++++..+.++|+...|+|||||..++++.+|+|+++++...+++++|++++... ......-.
T Consensus 334 ~~VVRLKqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGtgrKG~~p~ip~fvp 413 (506)
T KOG1527|consen 334 ATVVRLKQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGTGRKGGTPAIPAFVP 413 (506)
T ss_pred CEEEEecCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEEeccCCCCCCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985421 23344446
Q ss_pred CCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhc--cCCCcEEEEEcCCCCc
Q psy3751 893 SDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIF--QFEKPVLFMIGKSLKS 965 (967)
Q Consensus 893 ~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~--~~~~~~vi~vg~~~~~ 965 (967)
..|.||||+-+++.-++..|+++|++.++|++++||.++||||..+.+|.+..+... +..+|.++|+|.+++.
T Consensus 414 ~~TtVflMaLhrl~~L~q~L~~hGwp~d~Pa~ivERgscPdQR~vf~~Lkdv~ee~~~~gs~pPglliiGk~vn~ 488 (506)
T KOG1527|consen 414 DTTTVFLMALHRLPSLAQKLMDHGWPSDTPAVIVERGSCPDQRTVFAELKDVAEEIQSAGSVPPGLLIIGKVVNL 488 (506)
T ss_pred CceeEeeehhcchHHHHHHHHhcCCCCCCCeeeEeccCCchHHHHHHHHHHHHHHHHhccCCCCcEEEEeeeecc
Confidence 789999999999999999999999999999999999999999999999999987653 4679999999998864
No 55
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=100.00 E-value=2.9e-34 Score=296.58 Aligned_cols=189 Identities=23% Similarity=0.334 Sum_probs=154.3
Q ss_pred HHHHHHHHHHcCC-CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecch
Q psy3751 26 AIHIMREVSAECN-NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVED 104 (967)
Q Consensus 26 a~~~i~~~~~~~~-~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~ 104 (967)
+.++|+++++.++ +++++|||||||+|||||+.++. ++++++|+|||.+||||++|+++++++|+++++++.++.
T Consensus 1 ~~~~l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~----~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~~ 76 (212)
T TIGR00434 1 AQEIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKIS----PDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDL 76 (212)
T ss_pred CHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcC----CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCch
Confidence 3578899999886 88999999999999999999984 468999999999999999999999999999999998875
Q ss_pred hhhhcccccC-----CCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccc
Q psy3751 105 SIMKGTVRLR-----KPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWN 179 (967)
Q Consensus 105 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~ 179 (967)
.+.......+ .....+|..+|..++.+++++++..+|++|.|++||..|+.+..++.+..
T Consensus 77 ~~~~~~~~~g~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~~R~~~~~~~~~~~--------------- 141 (212)
T TIGR00434 77 SLAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGPSRANLSILNIDEK--------------- 141 (212)
T ss_pred hHHHHHHhcCCCccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCccccCCceeeecCC---------------
Confidence 5433111111 12233344466677788888877789999999999999998765543321
Q ss_pred cccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEEEeccc
Q psy3751 180 LYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVG 259 (967)
Q Consensus 180 ~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~g 259 (967)
.+.++++||++|+++|||+|+.+++||||||| ..+|.|.|
T Consensus 142 --------~~~~~v~PI~dWt~~dVw~Yi~~~~lp~npLY--------------------------------~~Gy~siG 181 (212)
T TIGR00434 142 --------FGILKVLPLIDWTWKDVYQYIDAHNLPYNPLH--------------------------------DQGYPSIG 181 (212)
T ss_pred --------CCcEEEeehhhCCHHHHHHHHHHcCCCCCchh--------------------------------hcCCCCcC
Confidence 13578999999999999999999999999999 68999999
Q ss_pred cccccccccCCcCC
Q psy3751 260 DILCTCPILSNATT 273 (967)
Q Consensus 260 c~~~~~~v~s~~~t 273 (967)
||+||.++..+++.
T Consensus 182 c~~ct~~~~~~~~~ 195 (212)
T TIGR00434 182 DYHSTRPVKEGEDE 195 (212)
T ss_pred CCCCCCCCCCCCCc
Confidence 99999998887443
No 56
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=7.3e-33 Score=324.38 Aligned_cols=267 Identities=23% Similarity=0.289 Sum_probs=217.6
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
.++||+++||+|||||||+++|++.++.++.+. .-.+++|+.++|+++|+|++.....+.+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~------------------~~~~~~D~~~~ErerGiTi~~~~v~~~~~ 63 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE------------------MREQVLDSMDLERERGITIKAQAVRLNYK 63 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc------------------ccccccCCChHHHhcCCCeeeeEEEEEEE
Confidence 478999999999999999999999887764321 12456899999999999999877666542
Q ss_pred -----CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 403 -----KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 403 -----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
...++|||||||.+|...+.++++.||++|+|+|+++ +...|+.+++..+...+++ +|+|+||+|+.
T Consensus 64 ~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~-------g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~ 135 (595)
T TIGR01393 64 AKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQ-------GIEAQTLANVYLALENDLE-IIPVINKIDLP 135 (595)
T ss_pred cCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCC-------CCCHhHHHHHHHHHHcCCC-EEEEEECcCCC
Confidence 2678999999999999999999999999999999999 8888999998887777886 89999999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEee
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~ 557 (967)
+.+. +++.+++. +.+++....++++||++|.|++++ +..+.+.+|.|....++||+++|.+++
T Consensus 136 ~~~~---~~~~~el~---~~lg~~~~~vi~vSAktG~GI~~L-----------le~I~~~lp~p~~~~~~pl~~~V~~~~ 198 (595)
T TIGR01393 136 SADP---ERVKKEIE---EVIGLDASEAILASAKTGIGIEEI-----------LEAIVKRVPPPKGDPDAPLKALIFDSH 198 (595)
T ss_pred ccCH---HHHHHHHH---HHhCCCcceEEEeeccCCCCHHHH-----------HHHHHHhCCCCCCCCCCCeEEEEEEEE
Confidence 5433 22333333 334543336899999999999984 334446678887777899999999999
Q ss_pred cCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc---cccceeecCCeEEEE--EccccCCCCCcccc
Q psy3751 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN---KSLDMAITGQSVTLI--IKEYLDISRGNMLV 632 (967)
Q Consensus 558 ~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~---~~v~~a~~G~~v~l~--l~~~~~i~~G~vl~ 632 (967)
..++.| ++++|||.+|+|+.||+|.+.+.+...+|++|..++ .+++++.|||.+.+. +++..++++||+|+
T Consensus 199 ~d~~~G----~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~ 274 (595)
T TIGR01393 199 YDNYRG----VVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGEVGYIIAGIKDVSDVRVGDTIT 274 (595)
T ss_pred EeCCCc----EEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCCEEEEeccccccCccCCCCEEE
Confidence 988887 899999999999999999999999999999999877 467999999954443 22446799999999
Q ss_pred cCCC
Q psy3751 633 SPFK 636 (967)
Q Consensus 633 ~~~~ 636 (967)
+.+.
T Consensus 275 ~~~~ 278 (595)
T TIGR01393 275 HVKN 278 (595)
T ss_pred CCCC
Confidence 8654
No 57
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=100.00 E-value=2.9e-33 Score=291.44 Aligned_cols=218 Identities=21% Similarity=0.231 Sum_probs=170.7
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCeEE
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVV 817 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv 817 (967)
++|+||+|||||++||+||+++|++||+|+++.+..+.+..+.+.+..+..+. ..+.+..+.+++.+++|++||
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~~~~lv~~~~~~~~~i~~~~------~~~~~~~~~~i~~~~~g~~Vv 74 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTYTHLVKAFTGDKQVIKTGM------CKEIERCQAAIELAQAGHNVA 74 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCcHHHHHHhhcCCCEEEECCC------chHHHHHHHHHHHHHCCCeEE
Confidence 37999999999999999999999999999998776544433334444443321 122333445678889999999
Q ss_pred EEEcCCCCCCCchHHHHHHHHHCC--CcEEEEcCchHHHHHHHhcCCccccCceeeEEE-eecccccccccccccCCCCC
Q psy3751 818 RLKGGDPMLFGRTDEELNALKKYN--IKVKVIPGITAALAAASESKQSLTKRNISRSVV-LFTSSTMLKNNYLKNIPISD 894 (967)
Q Consensus 818 ~l~~GDP~~~~~~~~l~~~l~~~~--i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 894 (967)
+|++|||++|+++.++.+.+.+++ ++++++|||||+++|+|++|+||++++...++. +.+++...+..+..+.....
T Consensus 75 ~L~sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~~~~~~~~~~~~~~~a~~~~~~ 154 (241)
T PRK15478 75 LISSGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPVIEKRIVAAGEADF 154 (241)
T ss_pred EEECCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecccCCCCcHHHHHhHHHHhcCCe
Confidence 999999999999999999998876 568999999999999999999998876555543 22333322234555666678
Q ss_pred cEEEEecccc--HHHHHH--HHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcCCC
Q psy3751 895 TLVEYMGGNN--IFLTAK--KLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSL 963 (967)
Q Consensus 895 t~vl~~~~~~--~~~i~~--~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~~~ 963 (967)
|++|||+.++ ...+.+ .|...|+++++||++++++|+++|+++++||+++.. ....+|++++||++.
T Consensus 155 tlvlym~~~~~~~~~l~~~~~ll~~g~~~~tPvaiv~~~t~~~q~~~~~tL~~l~~--~~~~~~~liivG~~~ 225 (241)
T PRK15478 155 VICFYNPRSRGREGHLARAFDLLAASKSAQTPVGVVKSAGRKKEEKWLTTLGDMDF--EPVDMTSLVIVGNKT 225 (241)
T ss_pred EEEEECCcccccHHHHHHHHHHHHccCCCCCEEEEEEeCCCCCeEEEEEEHHHhhh--cCCCCceEEEECCee
Confidence 9999998765 444432 566678999999999999999999999999999975 567899999999865
No 58
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=7.3e-33 Score=324.70 Aligned_cols=268 Identities=22% Similarity=0.287 Sum_probs=220.1
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+.++||+|+||+|||||||+++|++.+|.++.+. .-.+++|+.++|+++|+|++.....+.
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~------------------~~~~~lD~~~~ErerGiTi~~~~v~~~ 65 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE------------------MKAQVLDSMDLERERGITIKAQAVRLN 65 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc------------------cccccccCchHHhhcCCcccccEEEEE
Confidence 35678999999999999999999999888774321 024678999999999999988776665
Q ss_pred cC-----CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 401 TP-----KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 401 ~~-----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
+. +..++|||||||.+|...+.++++.+|++|+|||+++ +++.|+.+++..+...+++ +|+|+||+|
T Consensus 66 ~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~-------gv~~qt~~~~~~~~~~~lp-iIvViNKiD 137 (600)
T PRK05433 66 YKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ-------GVEAQTLANVYLALENDLE-IIPVLNKID 137 (600)
T ss_pred EEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCC-------CCCHHHHHHHHHHHHCCCC-EEEEEECCC
Confidence 43 5689999999999999999999999999999999999 8889999999888878887 899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHh-hcccCCCcCCCCCceeeEE
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLL-ESLNTNEKIDKKPLRFPVQ 554 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l-~~~~~~~~~~~~~~~~~i~ 554 (967)
+.+.+. +.+.+++.+ .+++....++++||++|.|+++ |++.+ +.+|.|....++||+++|.
T Consensus 138 l~~a~~---~~v~~ei~~---~lg~~~~~vi~iSAktG~GI~~------------Ll~~I~~~lp~P~~~~~~pl~~~Vf 199 (600)
T PRK05433 138 LPAADP---ERVKQEIED---VIGIDASDAVLVSAKTGIGIEE------------VLEAIVERIPPPKGDPDAPLKALIF 199 (600)
T ss_pred CCcccH---HHHHHHHHH---HhCCCcceEEEEecCCCCCHHH------------HHHHHHHhCccccCCCCCCceEEEE
Confidence 975432 233333333 3455434689999999999998 44444 5678787777899999999
Q ss_pred EeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc---cccceeecCCeEEEE--EccccCCCCCc
Q psy3751 555 LVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN---KSLDMAITGQSVTLI--IKEYLDISRGN 629 (967)
Q Consensus 555 ~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~---~~v~~a~~G~~v~l~--l~~~~~i~~G~ 629 (967)
+++..++.| ++++|||.+|+|++||+|.+.+.+...+|++|..++ .+++++.|||++.+. +++..++++||
T Consensus 200 d~~~d~~~G----~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gd 275 (600)
T PRK05433 200 DSWYDNYRG----VVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVGYIIAGIKDVRDARVGD 275 (600)
T ss_pred EEEecCCCc----eEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEEEEecccccccccCCCC
Confidence 999888877 899999999999999999999999999999998764 578999999965554 23456799999
Q ss_pred ccccCCC
Q psy3751 630 MLVSPFK 636 (967)
Q Consensus 630 vl~~~~~ 636 (967)
+|++...
T Consensus 276 tl~~~~~ 282 (600)
T PRK05433 276 TITLAKN 282 (600)
T ss_pred EEECCCC
Confidence 9998654
No 59
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=100.00 E-value=2.2e-33 Score=295.67 Aligned_cols=218 Identities=22% Similarity=0.216 Sum_probs=175.8
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEecccch-------HHHhcCCCceEEEecccccccchh-HHHHHHHHHHH
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALITN-------ELLMLCPKAKHIFVGKRFKKHSIA-QYIINRIIVKC 809 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 809 (967)
++|+||+|||+|++||+||+++|++||+|+++..... .+..+. ++........ .++..+.+++.
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~~~s~l~~~~~~~~~~~~--------~~~~~~~~~~~~e~~~~~ii~~ 72 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEFYTSKLLGSSIEEIEEFF--------GKRVVVLERSDVEENSFRLIER 72 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEeccchhhccccHHHHHHHh--------CCcccccCHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999854331 111111 1111101111 22334556666
Q ss_pred HhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc----c
Q psy3751 810 AFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN----N 885 (967)
Q Consensus 810 ~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~----~ 885 (967)
+++ ++||+|++|||++|+++.+|++++++.|++++|||||||+++|+|++|+|+++++.+.++.+.+.|..+.. .
T Consensus 73 ~~~-~~Vv~l~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~ 151 (257)
T TIGR00522 73 AKS-KDVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVI 151 (257)
T ss_pred hcC-CCEEEEECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHH
Confidence 654 88999999999999999999999999999999999999999999999999999999999999999885432 2
Q ss_pred ccccCCCCCcEEEE---------e----ccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCC
Q psy3751 886 YLKNIPISDTLVEY---------M----GGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFE 952 (967)
Q Consensus 886 ~~~~~~~~~t~vl~---------~----~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~ 952 (967)
+..+....+|+||| | +.+++.++.+.|.+.|+++++||++++|+|+|||+++.+||+++.+..+..+
T Consensus 152 ~~~l~~~~~Tlvll~~~~~~~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~~~~~de~i~~gtl~~l~~~~~~~~ 231 (257)
T TIGR00522 152 KENRKIGLHTLVLLDIHPKENRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSGKPVVKCDKIENLKNYDFGEP 231 (257)
T ss_pred HHHHhcCCCcEEEEecccCcccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEECCCCCceEEEEEHHHHHhcccCCC
Confidence 44555567799998 6 4455666878888889999999999999999999999999999988767778
Q ss_pred CcEEEEEcCCCC
Q psy3751 953 KPVLFMIGKSLK 964 (967)
Q Consensus 953 ~~~vi~vg~~~~ 964 (967)
.|+||++|+++.
T Consensus 232 ~~alii~g~~l~ 243 (257)
T TIGR00522 232 LHCLVVLAKTLH 243 (257)
T ss_pred CeEEEEeCCCCC
Confidence 889999999764
No 60
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=100.00 E-value=7.4e-34 Score=297.76 Aligned_cols=186 Identities=22% Similarity=0.360 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHcC-CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEe
Q psy3751 23 ESEAIHIMREVSAEC-NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRS 101 (967)
Q Consensus 23 ~~~a~~~i~~~~~~~-~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~ 101 (967)
...++++|+++++.+ ++++|+|||||||+|+|||+.++ +.+++++|+|||++||||++|+++++++||+++++++
T Consensus 25 ~~~~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~----~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~ 100 (241)
T PRK02090 25 GASAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQV----DPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYR 100 (241)
T ss_pred cCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhc----CCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 448999999999987 56889999999999999999997 4579999999999999999999999999999999998
Q ss_pred cchhhhhccccc----C---CCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCC
Q psy3751 102 VEDSIMKGTVRL----R---KPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQR 174 (967)
Q Consensus 102 ~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~ 174 (967)
++..+....... . ...+.+|..+|..++.+++++++. |++|+|++||..|+.++.++.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~--~itG~R~~es~~R~~~~~~~~~~----------- 167 (241)
T PRK02090 101 PDASAAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDA--WITGLRREQSGTRANLPVLEIDG----------- 167 (241)
T ss_pred CCccHHHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCC--eEEEechhhCchhccCceeeecC-----------
Confidence 876442221111 1 223455555788888888887664 99999999999998876655322
Q ss_pred ccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEE
Q psy3751 175 PELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVR 254 (967)
Q Consensus 175 p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r 254 (967)
+..+++||++|+++|||.|+..++||+|||| ..+
T Consensus 168 --------------~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~pLY--------------------------------~~G 201 (241)
T PRK02090 168 --------------GRFKINPLADWTNEDVWAYLKEHDLPYHPLV--------------------------------DQG 201 (241)
T ss_pred --------------CeEEEeehhhCCHHHHHHHHHHcCCCCChHH--------------------------------HcC
Confidence 2579999999999999999999999999999 689
Q ss_pred EeccccccccccccCCc
Q psy3751 255 FRTVGDILCTCPILSNA 271 (967)
Q Consensus 255 ~~~~gc~~~~~~v~s~~ 271 (967)
|.|+|||+||.++.+++
T Consensus 202 y~siGC~~Ct~~~~~~~ 218 (241)
T PRK02090 202 YPSIGCEPCTRPVEPGE 218 (241)
T ss_pred CCCcCCCCCCCCCCCCC
Confidence 99999999999998884
No 61
>PRK08557 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=304.47 Aligned_cols=213 Identities=27% Similarity=0.376 Sum_probs=174.1
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHcCC----CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHH
Q psy3751 12 NNLNNLYLDWLESEAIHIMREVSAECN----NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRD 87 (967)
Q Consensus 12 ~~~~~~~l~~~~~~a~~~i~~~~~~~~----~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~ 87 (967)
.++|..+|+.++++++++|+++++.+. .++++|||||||+|+|+|+.++. .++.++|+|||++||+|++|++
T Consensus 152 i~~n~~~l~~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~----~~i~vvfvDTG~efpET~e~ve 227 (417)
T PRK08557 152 LEKNKERIEKLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVI----PDLEVIFIDTGLEYPETINYVK 227 (417)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhC----CCCEEEEEECCCCCHHHHHHHH
Confidence 457888999999999999999999873 35699999999999999999883 4689999999999999999999
Q ss_pred HHHHHhCCcEEEEecchhhhhcccccCCCCcccchh---hcHHHHHHHHHH---cCCcEEEEeccchhhHhhhccccccc
Q psy3751 88 NCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNA---AQSITLLETIKE---FKFDACIGGARRDEEKARAKERIFSF 161 (967)
Q Consensus 88 ~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~G~R~des~~R~~~~~~~~ 161 (967)
+++++||++++++.++ .++......+.|....+|| +|..++.+++++ .+..++++|.|++||.+|+.++..+.
T Consensus 228 ~v~~~ygl~i~v~~~~-~f~~~~~~~G~Ps~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~~Ra~~~~~~~ 306 (417)
T PRK08557 228 DFAKKYDLNLDTLDGD-NFWENLEKEGIPTKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESFTRANLDYERK 306 (417)
T ss_pred HHHHHhCCCEEEEech-HHHHHHhhccCCcccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccchhhccCceecc
Confidence 9999999999998765 4555444455554444443 566777777776 34568999999999999998765432
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCC
Q psy3751 162 RDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTP 241 (967)
Q Consensus 162 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~ 241 (967)
+.. .....+++||++||+.|||.||..+++||||||
T Consensus 307 ~~~----------------------~~~~~~i~PI~~Wt~~dVW~YI~~~~lp~npLY---------------------- 342 (417)
T PRK08557 307 SGF----------------------IDFQTNVFPILDWNSLDIWSYIYLNDILYNPLY---------------------- 342 (417)
T ss_pred ccc----------------------ccCceeEEecccCCHHHHHHHHHHcCCCCCchh----------------------
Confidence 110 012468999999999999999999999999999
Q ss_pred CCCCccceeeeEEEeccccccccccccCCcCChHHHHHhhhh
Q psy3751 242 AHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEISV 283 (967)
Q Consensus 242 ~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~ 283 (967)
..+|.|.|||+||++..++..++.+..++...
T Consensus 343 ----------~~Gy~riGC~~Cp~~~~~e~~~l~~~~Pe~~~ 374 (417)
T PRK08557 343 ----------DKGFERIGCYLCPSALNSEFLRVKELYPELFN 374 (417)
T ss_pred ----------hCCCCCCCccCCCCccHHHHHHHHHHCHHHHH
Confidence 68999999999999999888888777777653
No 62
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=100.00 E-value=2e-32 Score=304.91 Aligned_cols=196 Identities=19% Similarity=0.332 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHcCC-CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEec
Q psy3751 24 SEAIHIMREVSAECN-NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSV 102 (967)
Q Consensus 24 ~~a~~~i~~~~~~~~-~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~ 102 (967)
..+.++|+++++.++ ++++++|||+|+ |||||+.+. +++++++|+|||++||||++|++++.++||++++++.+
T Consensus 101 ~~~~eil~~a~~~f~~~iavasSG~eds-vLlhl~~~~----~~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~p 175 (463)
T TIGR00424 101 ASPLEIMDKALEKFGNDIAIAFSGAEDV-ALIEYAHLT----GRPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMFP 175 (463)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeccHHHH-HHHHHHHHh----CCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECC
Confidence 357899999999874 688999988886 689999998 55799999999999999999999999999999999877
Q ss_pred chhhhh------cccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhH-hhhccccccccccCCCCCCCCCCc
Q psy3751 103 EDSIMK------GTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEK-ARAKERIFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 103 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~-~R~~~~~~~~~~~~~~~~~~~~~p 175 (967)
+..... +...++...+..||.++|..+++.+.+ +.++|++|.|++||. .|+.+++++++..+...
T Consensus 176 ~~~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~-~~~awitG~Rr~Qs~~tRa~~~~ve~d~~~~~~------- 247 (463)
T TIGR00424 176 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK-GLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGL------- 247 (463)
T ss_pred CcchHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHH-hCCcEEeeeccccCccccccCCccccccccccc-------
Confidence 542221 111122234567888777777666666 678999999999998 89999999877532110
Q ss_pred cccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEEE
Q psy3751 176 ELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVRF 255 (967)
Q Consensus 176 ~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~ 255 (967)
....++.++++||++||.+|||.||++|+||||||| ..+|
T Consensus 248 --------~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~npL~--------------------------------~~GY 287 (463)
T TIGR00424 248 --------DGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTLH--------------------------------AQGY 287 (463)
T ss_pred --------ccCCCceEEEeecccCCHHHHHHHHHHcCCCCCchh--------------------------------hcCC
Confidence 001134799999999999999999999999999999 7899
Q ss_pred eccccccccccccCCcC
Q psy3751 256 RTVGDILCTCPILSNAT 272 (967)
Q Consensus 256 ~~~gc~~~~~~v~s~~~ 272 (967)
.|.||++||+|+.++++
T Consensus 288 ~SIGC~pCT~pv~~ged 304 (463)
T TIGR00424 288 VSIGCEPCTRPVLPGQH 304 (463)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 99999999999998854
No 63
>PLN02309 5'-adenylylsulfate reductase
Probab=99.98 E-value=3.5e-32 Score=303.13 Aligned_cols=196 Identities=20% Similarity=0.336 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHcC-CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEec
Q psy3751 24 SEAIHIMREVSAEC-NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSV 102 (967)
Q Consensus 24 ~~a~~~i~~~~~~~-~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~ 102 (967)
..+.++|+++++.+ +++++++|||+|+ ||+||+.+. +++++++|+|||++||||++|++++.++||++++++.+
T Consensus 96 ~~~~eil~~a~~~~~~~ia~~~SG~ed~-vll~l~~~~----~~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~P 170 (457)
T PLN02309 96 ASPLEIMDKALEKFGNDIAIAFSGAEDV-ALIEYAHLT----GRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFP 170 (457)
T ss_pred CCHHHHHHHHHHHcCCCEEEEecchHHH-HHHHHHHHh----CCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECC
Confidence 35689999999987 5678999977776 788999887 55799999999999999999999999999999999987
Q ss_pred chhhhhc------ccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhH-hhhccccccccccCCCCCCCCCCc
Q psy3751 103 EDSIMKG------TVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEK-ARAKERIFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 103 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~-~R~~~~~~~~~~~~~~~~~~~~~p 175 (967)
+...... ...++...+..||.++|..+++.+.+ +.++|++|.|++||. .|+.+++++++..+...
T Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~-~~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~------- 242 (457)
T PLN02309 171 DAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGL------- 242 (457)
T ss_pred CcchHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHh-hCCEEEEeeccccCccccccCCeeeeccccccc-------
Confidence 6532221 11122234567888777777777766 678999999999998 89999999877532110
Q ss_pred cccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEEE
Q psy3751 176 ELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVRF 255 (967)
Q Consensus 176 ~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~ 255 (967)
....++.+|+|||++||.+|||.|+++|+||||||| ..+|
T Consensus 243 --------~~~~~~~lKvnPl~~Wt~~dVw~Yi~~~~lP~npL~--------------------------------~~GY 282 (457)
T PLN02309 243 --------DGGPGSLVKWNPLANVTGNEVWNFLRTMDVPVNSLH--------------------------------AQGY 282 (457)
T ss_pred --------ccCCCCeeEEcccccCCHHHHHHHHHHcCCCCCcch--------------------------------hcCC
Confidence 001134799999999999999999999999999999 6899
Q ss_pred eccccccccccccCCcC
Q psy3751 256 RTVGDILCTCPILSNAT 272 (967)
Q Consensus 256 ~~~gc~~~~~~v~s~~~ 272 (967)
.|.|||+||+++.++++
T Consensus 283 ~SIGC~pCT~pv~~g~~ 299 (457)
T PLN02309 283 VSIGCEPCTRPVLPGQH 299 (457)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 99999999999988854
No 64
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.98 E-value=2e-31 Score=269.92 Aligned_cols=190 Identities=26% Similarity=0.368 Sum_probs=164.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.+||+++||+|||||||+++|++.. ...|. ......+.+|+.++|+++|+|++.....++++
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~---------------~~~g~--~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~ 63 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVL---------------AKKGG--AKFKKYDEIDKAPEEKARGITINTAHVEYETA 63 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH---------------Hhccc--ccccccccccCChhhhhcCccEEeeeeEecCC
Confidence 35899999999999999999999732 11222 11112356899999999999999999999999
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
+.+++|+|||||.+|..++..++..+|++++|||+.+ |+..|+++++.++..++++++|+|+||||++. +++
T Consensus 64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-------g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~ 135 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-------GPMPQTREHLLLARQVGVPYIVVFLNKADMVD-DEE 135 (195)
T ss_pred CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHH
Confidence 9999999999999999999999999999999999999 88999999999999999988999999999984 556
Q ss_pred HHHHHHHHHHHHHHHcCC--ccceEEeccccCCCcccccccCCCCCC-CCcHHHHhhcccC
Q psy3751 483 FYKRIVYAYKKFAEDIHF--QNINTIPISALNGDNIISASNNMLWYN-GPTLISLLESLNT 540 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~--~~~~ii~iSa~~g~gi~~l~~~~~w~~-~~~L~~~l~~~~~ 540 (967)
.++.+.++++.+++++++ ++++++|+||++|.|+.+ .++||+ +++|+++|+++.+
T Consensus 136 ~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~---~~~w~~~~~~l~~~l~~~~~ 193 (195)
T cd01884 136 LLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD---PNKWVKKILELLDALDSYIP 193 (195)
T ss_pred HHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC---CCcchhcHhHHHHHHHhCCC
Confidence 677788899999999887 468999999999999865 589998 6999999997754
No 65
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=99.98 E-value=1.9e-31 Score=280.06 Aligned_cols=215 Identities=23% Similarity=0.326 Sum_probs=166.8
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHH-HHHHHHHHhcCCe
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYII-NRIIVKCAFKYNL 815 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 815 (967)
|.+++||+|||||++||+||+++|++||+|+++.+..+.+..+......... .+.++.. .+.+++.+++|++
T Consensus 2 g~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~g~~ 74 (246)
T PRK05765 2 GKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTYLRLISDLLDGKEVIGA-------RMKEEIFRANTAIEKALEGNI 74 (246)
T ss_pred CEEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccCHHHHHHHhcCCCEEecC-------CchHHHHHHHHHHHHHHCCCc
Confidence 6789999999999999999999999999999987775544333332222111 1122222 2456778889999
Q ss_pred EEEEEcCCCCCCCchHHHHHHHHHCCC--cEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccc--cccc----ccc
Q psy3751 816 VVRLKGGDPMLFGRTDEELNALKKYNI--KVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSST--MLKN----NYL 887 (967)
Q Consensus 816 Vv~l~~GDP~~~~~~~~l~~~l~~~~i--~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~--~~~~----~~~ 887 (967)
||+|++|||++|+++.++++.+.++|+ +++++|||||+++|+|++|+||+... .+.+.|. .+.. .+.
T Consensus 75 Vv~l~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~-----~~~s~~~~~~p~~~~~~~l~ 149 (246)
T PRK05765 75 VALVSSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDF-----VVISLSDLLIPREEILHRVT 149 (246)
T ss_pred EEEEeCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCc-----EEEEcCCCCCChHHHHHHHH
Confidence 999999999999999999999999887 79999999999999999999996433 3333332 1111 244
Q ss_pred ccCCCCCcEEEEec--cccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcCCCC
Q psy3751 888 KNIPISDTLVEYMG--GNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLK 964 (967)
Q Consensus 888 ~~~~~~~t~vl~~~--~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~~~~ 964 (967)
.+.....+++|||+ .+.+..+.+.| +.|+++++||++++++|+++|+++++||+++.........+++|+||+.+.
T Consensus 150 ~~~~~~~~ivly~~~~~~~~~~~~~~l-~~~~~~~~pv~vv~~~t~~~E~i~~~tL~~l~~~~~~~~~~~~iiVg~~~~ 227 (246)
T PRK05765 150 KAAEADFVIVFYNPINENLLIEVMDIV-SKHRKPNTPVGLVKSAYRNNENVVITTLSSWKEHMDEIGMTTTMIIGNSLT 227 (246)
T ss_pred HHhcCCeEEEEEcccchhHHHHHHHHH-HhcCCCCCEEEEEEeCCCCCeEEEEEEHHHhhhhhhcCCCceEEEECCccc
Confidence 45556789999997 34456666555 457999999999999999999999999999986666678899999998764
No 66
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=99.97 E-value=3.9e-31 Score=273.32 Aligned_cols=220 Identities=21% Similarity=0.231 Sum_probs=168.6
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEEeccc------chHHH-hcCC-CceEEE----ecccccccchhHHHH
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALI------TNELL-MLCP-KAKHIF----VGKRFKKHSIAQYII 802 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~------~~~~~-~~~~-~~~~~~----~~~~~~~~~~~~~~~ 802 (967)
+.|.+|+||+|||||++||+||+++|++||+|++|... ...++ .+.+ ....+. +.+........+++.
T Consensus 2 ~~g~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~~s~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~ 81 (238)
T PRK05948 2 TLGTLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQPGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAA 81 (238)
T ss_pred CCCEEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCchhHHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHH
Confidence 46899999999999999999999999999999997633 12222 2333 222322 222211112233455
Q ss_pred HHHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHC--CCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccc
Q psy3751 803 NRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKY--NIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSST 880 (967)
Q Consensus 803 ~~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~--~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~ 880 (967)
.+.+.+.+.+|++||+|++|||+|||++.++.+.+++. |+++|+||||||++++||++|+||+.+.+. +.+++.|.
T Consensus 82 ~~~i~~~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~--l~ii~~~~ 159 (238)
T PRK05948 82 ADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQR--LAILPALY 159 (238)
T ss_pred HHHHHHHHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCe--EEEEcCCC
Confidence 67788889999999999999999999999999999984 899999999999999999999999988754 44555554
Q ss_pred cccccccccCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEc
Q psy3751 881 MLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIG 960 (967)
Q Consensus 881 ~~~~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg 960 (967)
.. ..+...+...+++|+|+..+.+.++.+.|.+.|+.++ +++++|+|+|+|++++ ++.++.. ...+..+++++.
T Consensus 160 ~~-~~l~~~l~~~~~vVlmk~~~~~~~i~~~L~~~g~~~~--~~vv~~~~~~~E~i~~-~l~~~~~--~~~~Y~S~iiv~ 233 (238)
T PRK05948 160 HL-EELEQALTWADVVVLMKVSSVYPQVWQWLKARNLLEQ--ASLVERATTPEQVIYR-NLEDYPD--LRLPYFSLLIIQ 233 (238)
T ss_pred CH-HHHHHHHhCCCEEEEEECCccHHHHHHHHHhCCCCCC--EEEEEECCCCCcEEEe-ehhhcCc--CCCCceEEEEEc
Confidence 22 3444555566788888877778999999999988654 7999999999999887 6666542 346788999986
Q ss_pred CC
Q psy3751 961 KS 962 (967)
Q Consensus 961 ~~ 962 (967)
+.
T Consensus 234 ~~ 235 (238)
T PRK05948 234 KR 235 (238)
T ss_pred CC
Confidence 53
No 67
>PTZ00175 diphthine synthase; Provisional
Probab=99.97 E-value=1.1e-30 Score=273.94 Aligned_cols=217 Identities=23% Similarity=0.151 Sum_probs=175.2
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEecccch-------HHHhcCCCceEEEecccccccchhHHHHHHHHHHHH
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALITN-------ELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCA 810 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (967)
++|+||+|||||++||+||+++|++||+|+++..++. .+..+.. ......+ .+ .. ++..+.+++.+
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~~ts~l~~~~~~~l~~~~g-k~~~~~~----r~-~~-e~~~~~ii~~a 74 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLESYTSILINSNKEKLEEFYG-KPVIEAD----RE-MV-EEGCDEILEEA 74 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEecccchhccCCHHHHHHhcC-CeeEecC----cc-CH-HHHHHHHHHHh
Confidence 5899999999999999999999999999999875432 1111221 1111111 11 11 22233466666
Q ss_pred hcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc----cc
Q psy3751 811 FKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN----NY 886 (967)
Q Consensus 811 ~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~----~~ 886 (967)
+ +++||+|++|||++|+++.+++.++++.|+++++|||+|+++|+ +.+|+|++.++.+.++.+.+.|+.+.. .|
T Consensus 75 ~-~~~Vv~L~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~-~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~ 152 (270)
T PTZ00175 75 K-EKNVAFLVVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAI-GCTGLQLYRFGETVSIPFFTETWKPDSFYDKIK 152 (270)
T ss_pred C-CCCEEEEECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHH-hhcCCCcCCCCceEEEEEEeCCCCCCChhHHHH
Confidence 5 68899999999999999999999999999999999999988777 669999999999999999999986543 34
Q ss_pred cccCCCCCcEEE------------------------Eec----cccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEE
Q psy3751 887 LKNIPISDTLVE------------------------YMG----GNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITR 938 (967)
Q Consensus 887 ~~~~~~~~t~vl------------------------~~~----~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~ 938 (967)
..+.+..+|+|+ ||+ ..++.++.+.+.+.++++++++++++|+|+++|+++.
T Consensus 153 ~n~~~glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r~g~~~q~i~~ 232 (270)
T PTZ00175 153 ANRDNGLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGSDDQQIVS 232 (270)
T ss_pred HHHHcCCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEECCCCCceEEE
Confidence 556667899999 998 5667778888888889999999999999999999999
Q ss_pred EehhhHHHhhccCCCcEEEEEcCCC
Q psy3751 939 LILLDLKKKIFQFEKPVLFMIGKSL 963 (967)
Q Consensus 939 ~~l~~l~~~~~~~~~~~vi~vg~~~ 963 (967)
|||++|.+..+..+.+++||+|+.+
T Consensus 233 gtL~~l~~~d~g~PlhsLIv~g~~L 257 (270)
T PTZ00175 233 GTLEDLLDVDFGPPLHSLVICAPTL 257 (270)
T ss_pred EEHHHHhhcccCCCCEEEEEECCcC
Confidence 9999998766777778999999844
No 68
>PRK13794 hypothetical protein; Provisional
Probab=99.97 E-value=2.2e-31 Score=302.97 Aligned_cols=212 Identities=26% Similarity=0.363 Sum_probs=172.1
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHcC-CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHH
Q psy3751 12 NNLNNLYLDWLESEAIHIMREVSAEC-NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCI 90 (967)
Q Consensus 12 ~~~~~~~l~~~~~~a~~~i~~~~~~~-~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~ 90 (967)
-++|..+|+.++++|+++|+++++.+ ++++|+|||||||+|+|+|+.+++ +.++.++|+|||++||+|++++++++
T Consensus 221 ~~~n~~~l~~~~~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~---~~~~~vvfiDTG~efpet~e~i~~~~ 297 (479)
T PRK13794 221 VEANKNVLDKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKAL---GINFPVLFNDTGLEFPETLENVEDVE 297 (479)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHHh---CCCeEEEEEECCCCChHHHHHHHHHH
Confidence 56788999999999999999998876 567899999999999999999986 24689999999999999999999999
Q ss_pred HHhCCcEEEEecchhhhhcccccCCCCcccchh---hcHHHHHHHHHHc--CCcEEEEeccchhhHhhhccccccccccC
Q psy3751 91 SKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNA---AQSITLLETIKEF--KFDACIGGARRDEEKARAKERIFSFRDKF 165 (967)
Q Consensus 91 ~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~G~R~des~~R~~~~~~~~~~~~ 165 (967)
++||++++++.++ .++......+.|....+|| +|..++.+++++. +..++++|.|++||..|+.++.++.+..
T Consensus 298 ~~~gl~i~~~~~~-~f~~~~~~~G~P~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~~Ra~~~~~~~~~~- 375 (479)
T PRK13794 298 KHYGLEIIRTKSE-EFWEKLEEYGPPARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESFNRSKKPRIWRNPY- 375 (479)
T ss_pred HhcCCcEEEEchH-HHHHHHHhcCCCCCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccHhHhcCcccccccC-
Confidence 9999999998876 5665444445554443333 5566677777662 4678999999999999998765542221
Q ss_pred CCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCC
Q psy3751 166 GQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPG 245 (967)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~ 245 (967)
..+.++++||++||..|||.||..+++||||||
T Consensus 376 ---------------------~~~~~~~~PI~~Wt~~dVw~Yi~~~~lp~npLY-------------------------- 408 (479)
T PRK13794 376 ---------------------IKKQILAAPILHWTAMHVWIYLFREKAPYNKLY-------------------------- 408 (479)
T ss_pred ---------------------cCCcEEEechHhCCHHHHHHHHHHcCCCCChHH--------------------------
Confidence 013578999999999999999999999999999
Q ss_pred ccceeeeEEEeccccccccccccCCcCChHHHHHhh
Q psy3751 246 EIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEI 281 (967)
Q Consensus 246 ~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~ 281 (967)
..+|.|.|||+||.....+...+.+.-++.
T Consensus 409 ------~~G~~riGC~~Cp~~~~~e~~~i~~~~Pe~ 438 (479)
T PRK13794 409 ------EQGFDRIGCFMCPAMELGEIELIKAEYPEL 438 (479)
T ss_pred ------HCCCCCCccccCcCcCHHHHHHHHHHCHHH
Confidence 689999999999998766666555555553
No 69
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=99.97 E-value=5.8e-31 Score=273.47 Aligned_cols=206 Identities=30% Similarity=0.341 Sum_probs=164.3
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHHHHH--HHHHhcCCe
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRII--VKCAFKYNL 815 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~ 815 (967)
++++||+|||+|++||++|+++|++||+|+++.+..+.+..+.+. ...............+++.+.+ .+.+.+|++
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~ 78 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPERALEIVRDLLPE--IFPMGKDRESLEESYDEIAEIIEAIEAAKEGKD 78 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEETTCHHHHHHHHHT--EETTSSEEEEEHHHHHHHHHHHHHHHHHHTTSE
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCcccccccchHHHHhhccc--cccccccccchhhhhhHHHHHHHHHHHHhccCC
Confidence 579999999999999999999999999999999877777665422 1111111122234466666777 889999999
Q ss_pred EEEEEcCCCCCCCchHHHHHHHHH--CCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccccccccCCCC
Q psy3751 816 VVRLKGGDPMLFGRTDEELNALKK--YNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPIS 893 (967)
Q Consensus 816 Vv~l~~GDP~~~~~~~~l~~~l~~--~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (967)
|++|++|||+||+++.++++++.+ .|++++++|||||+++|+|++|+||+..+....+............+..++..+
T Consensus 79 V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (210)
T PF00590_consen 79 VVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHGLRDLDTEREKLLENLLANG 158 (210)
T ss_dssp EEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEETSSSSHHHHHHHHHHHTTT
T ss_pred EEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEEecccccchHHHHHHHHhCC
Confidence 999999999999999999999999 999999999999999999999999987665544430111111233566677778
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHH
Q psy3751 894 DTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLK 945 (967)
Q Consensus 894 ~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~ 945 (967)
+|+++|+.++++.++++.|.+..+++++++++++++|+|+|+++++|++|++
T Consensus 159 ~~~vil~~~~~~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~~~tl~ela 210 (210)
T PF00590_consen 159 DTLVILTDPRRLAEIAELLLERLYPPDTPVAVGERLGYPDERIFRGTLEELA 210 (210)
T ss_dssp SEEEEEESGCCHHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEEEEEHHHHH
T ss_pred CEEEEEccCchHHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEEEeEHHHcC
Confidence 9999999988999999999987224578999999999999999999999985
No 70
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=99.97 E-value=8.5e-31 Score=261.75 Aligned_cols=216 Identities=23% Similarity=0.264 Sum_probs=174.3
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEe-----cccchHHHhc-CC-CceE----EEeccc-ccccchhHHHHH
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYD-----ALITNELLML-CP-KAKH----IFVGKR-FKKHSIAQYIIN 803 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~-----~~~~~~~~~~-~~-~~~~----~~~~~~-~~~~~~~~~~~~ 803 (967)
++++|.||+|||||++||+||+++|++||||+++ ......+... .. +... +++... .......+++..
T Consensus 1 ~~klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~~slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~a 80 (234)
T COG2243 1 MGKLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEAA 80 (234)
T ss_pred CCeEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCccchHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999 3444455443 22 2222 233333 233344567777
Q ss_pred HHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc
Q psy3751 804 RIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK 883 (967)
Q Consensus 804 ~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~ 883 (967)
+.+..++++|++|+|++.|||+|||++.+|.++++..|+++|+||||||++++||++|+||...++..++++.+.. .
T Consensus 81 ~~va~~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~Vlp~t~~---~ 157 (234)
T COG2243 81 AEVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSVLPATRP---D 157 (234)
T ss_pred HHHHHHHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEEEeccCc---h
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999966644 3
Q ss_pred ccccccCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEc
Q psy3751 884 NNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIG 960 (967)
Q Consensus 884 ~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg 960 (967)
..+...+...+++|+|+..++...+.+.|...|.... +++++|+++++|+|.. +.+... .+.+..+++++-
T Consensus 158 ~~~~~~l~~~d~~VvMK~~~~~~~i~~~l~~~g~~~~--~~~v~R~~m~~e~i~~--l~~~~~--~~~~Yfs~ii~~ 228 (234)
T COG2243 158 EELERALADFDTAVVMKVGRNFEKLRRLLAKLGLLDR--AVYVERATMAGEKIVR--LAEAER--DEKPYFSTILVR 228 (234)
T ss_pred hhHHhHHhhCCeEEEEecCCcHHHHHHHHHhcCCCce--EEEEeecCCCCcEEEe--ccccCc--ccCCceEEEEEe
Confidence 5566677788999999999999999999988887544 6799999999999998 555432 122566777663
No 71
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=99.97 E-value=1.4e-30 Score=272.34 Aligned_cols=216 Identities=22% Similarity=0.241 Sum_probs=161.4
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEecccch-----HHH-hcCCCce-E----EEeccccccc--------c
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITN-----ELL-MLCPKAK-H----IFVGKRFKKH--------S 796 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~-----~~~-~~~~~~~-~----~~~~~~~~~~--------~ 796 (967)
+|.+|+||+|||||++||+||+++|++||+|++|..... .++ .+++... . +++++..... .
T Consensus 2 ~g~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~~~~ 81 (241)
T PRK05990 2 KGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVIA 81 (241)
T ss_pred CceEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCCcchHHHHHHHHcCCCceEEEeecCCccccccccchhhhHHH
Confidence 478999999999999999999999999999999864321 333 2343222 1 2233332211 1
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEee
Q psy3751 797 IAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLF 876 (967)
Q Consensus 797 ~~~~~~~~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~ 876 (967)
..++++++.+.+.+++|++||+|++|||+|||++.++.+++. +++++||||||||+++|||++|+||+.++...++ .
T Consensus 82 ~~~~~~~~~i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~l~-~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i--~ 158 (241)
T PRK05990 82 DFYDTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLA-PRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSV--L 158 (241)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeCCCcHHHhHHHHHHHHHh-cCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEE--E
Confidence 123556678888999999999999999999999999999985 4899999999999999999999999988755444 3
Q ss_pred cccccccccccccCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEE
Q psy3751 877 TSSTMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVL 956 (967)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~v 956 (967)
+++. +...+...+...++.|+|+..+++.++++.|.++|+++ ++++++|+|+|+|+++. +.++. ....+..++
T Consensus 159 ~~~~-~~~~l~~~l~~~~~~vv~k~~~~~~~i~~~L~~~g~~~--~~~~v~~~~~~~E~i~~--~~~~~--~~~~~Y~s~ 231 (241)
T PRK05990 159 SGVL-PEEELRRRLADADAAVIMKLGRNLDKVRRVLAALGLLD--RALYVERATMANQRIVP--LAEVD--PMASPYFSL 231 (241)
T ss_pred cCCC-ChHHHHHHHhCCCCEEEEEeCCcHHHHHHHHHHcCCCC--CEEEEEECCCCCeEEEE--ccccC--CCCCCceEE
Confidence 4432 22333444455566677766689999999999998764 46777999999999984 44443 234678899
Q ss_pred EEEcC
Q psy3751 957 FMIGK 961 (967)
Q Consensus 957 i~vg~ 961 (967)
+++-+
T Consensus 232 iiv~~ 236 (241)
T PRK05990 232 ILVPG 236 (241)
T ss_pred EEEec
Confidence 99854
No 72
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=99.97 E-value=6.4e-30 Score=270.17 Aligned_cols=218 Identities=14% Similarity=0.135 Sum_probs=178.7
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEE-ecccchHHHhcCCCceE-EEecccccccchhHHHHHHHHHHHHhc
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKH-IFVGKRFKKHSIAQYIINRIIVKCAFK 812 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (967)
..|.+|+||+|||||++||+||+++|++||+|+| +++....++..+..... +... ...+++..+.++..+.+
T Consensus 10 ~~g~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~t~~ll~~~~i~~~~~~~~------~~~~~~~~~~i~~~l~~ 83 (287)
T PRK14994 10 SQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALH------DHNEQQKAETLLAKLQE 83 (287)
T ss_pred CCCeEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcchHHHHhhcCCCCEEEEcc------CCCHHHHHHHHHHHHHC
Confidence 3588999999999999999999999999999999 56666667776643333 3332 22345555678889999
Q ss_pred CCeEEEEE-cCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccccccccCC
Q psy3751 813 YNLVVRLK-GGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIP 891 (967)
Q Consensus 813 g~~Vv~l~-~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (967)
|++||+++ .|||++|+++.+|++++++.|++|++||||||+++|+|.+|+|- +++.+.+|++.+... ..+.+..++.
T Consensus 84 G~~ValvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~-~~f~f~Gflp~~~~~-r~~~L~~l~~ 161 (287)
T PRK14994 84 GQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPS-DRFCYEGFLPAKSKG-RRDALKALEA 161 (287)
T ss_pred CCeEEEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCC-CcceEeEECCCCCch-HHHHHHHHhc
Confidence 99999995 99999999999999999999999999999999999999999994 555555554222111 1345777778
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhc----cCCCcEEEEEcC
Q psy3751 892 ISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIF----QFEKPVLFMIGK 961 (967)
Q Consensus 892 ~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~----~~~~~~vi~vg~ 961 (967)
.++|+|||++++++.++++.|.+. +++++++++++++|+++|.+++|++.++.+... ..+++.||||+.
T Consensus 162 ~~~t~V~yesp~R~~~~l~~l~~~-~g~~~~v~i~relTk~~E~~~~g~~~~i~~~~~~~~~~~kGE~vivi~~ 234 (287)
T PRK14994 162 EPRTLIFYESTHRLLDSLEDIVAV-LGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEG 234 (287)
T ss_pred CCCeEEEEEEChhHHHHHHHHHHh-cCCCCeEEEEeeccCCCCcEEeeEHHHHHHHHHhcCCCCCceEEEEEeC
Confidence 899999999999998888888775 667889999999999999999999999987652 358999999964
No 73
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.97 E-value=1.6e-31 Score=269.23 Aligned_cols=170 Identities=37% Similarity=0.575 Sum_probs=124.8
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcccccCCCCc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNT 118 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~ 118 (967)
+++|+|||||||+|+|||+.++.. +++++|+|||.+||+|++|+++++++||++++++.+...+.......+.+..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~----~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 76 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR----KVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPETFEQRFILYGWPSK 76 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT----TCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTSHHHHHHHHHHHSTT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC----CCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccccchhhccccccccch
Confidence 478999999999999999999965 4689999999999999999999999999999999888766544333222221
Q ss_pred ----ccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEe
Q psy3751 119 ----DSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVF 194 (967)
Q Consensus 119 ----~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~ 194 (967)
.+|..+|..++.+++++++..++++|.|++||.+|+....++.+.... ...+++
T Consensus 77 ~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~~R~~~~~~~~~~~~~----------------------~~~~~~ 134 (174)
T PF01507_consen 77 LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESPRRAKLPMFEFDEDNP----------------------KIIRVY 134 (174)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTTGCCGSSSEEEETTTT----------------------SEEEE-
T ss_pred hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchhhhhhchhhhcccccC----------------------CEEEEE
Confidence 245557888888888998889999999999999999877666554322 147899
Q ss_pred eCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEEEecccccccccc
Q psy3751 195 PISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCP 266 (967)
Q Consensus 195 Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~ 266 (967)
||++|+++|||+|++.+++|+|||| ..+|.|+|||+||.|
T Consensus 135 Pi~~wt~~dV~~yi~~~~l~~~~lY--------------------------------~~g~~r~GC~~C~~~ 174 (174)
T PF01507_consen 135 PIADWTEEDVWDYIKANGLPYNPLY--------------------------------DKGYSRVGCWPCTRP 174 (174)
T ss_dssp TTTT--HHHHHHHHHHHT--B-HHH--------------------------------HCT-SS--BTTTB--
T ss_pred ehhhCCHHHHHHHHHHhcCCCcHHH--------------------------------HCcCCCcCCccCCCC
Confidence 9999999999999999999999999 567899999999975
No 74
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=99.97 E-value=4.6e-30 Score=269.02 Aligned_cols=215 Identities=25% Similarity=0.271 Sum_probs=166.5
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEEeccc------chHH-HhcCCC--ceEE----EecccccccchhHHHHH
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALI------TNEL-LMLCPK--AKHI----FVGKRFKKHSIAQYIIN 803 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~------~~~~-~~~~~~--~~~~----~~~~~~~~~~~~~~~~~ 803 (967)
|++++||+|||+|++||++|+++|++||+|+++... ...+ ..+.+. .... .+...........+++.
T Consensus 1 ~~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T TIGR01467 1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWDEAA 80 (230)
T ss_pred CEEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCCcchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHHHHH
Confidence 468999999999999999999999999999996532 2223 333332 2221 12222112223344555
Q ss_pred HHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc
Q psy3751 804 RIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK 883 (967)
Q Consensus 804 ~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~ 883 (967)
+.+.+.+++|++||+|++|||+||+++.++++++.+.|++++++|||||+++|+|++|+||+.++...+++ +.+. +.
T Consensus 81 ~~i~~~~~~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~--~~~~-~~ 157 (230)
T TIGR01467 81 EAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAIL--PATA-GE 157 (230)
T ss_pred HHHHHHHHCCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEE--eCCC-CH
Confidence 66777888999999999999999999999999999889999999999999999999999998876554544 4443 22
Q ss_pred ccccccCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEE
Q psy3751 884 NNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMI 959 (967)
Q Consensus 884 ~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~v 959 (967)
..+...+..++++|+|++.+++.++++.|.+.|+ +.++++++|+|+|+|+++.+ +.++. ...++..+++++
T Consensus 158 ~~~~~~~~~~~~vvil~~~~~~~~i~~~L~~~g~--~~~v~v~e~l~~~~E~i~~~-~~~~~--~~~~~y~s~~i~ 228 (230)
T TIGR01467 158 AELEKALAEFDTVVLMKVGRNLPQIKEALAKLGR--LDAAVVVERATMPDEKIVDL-VREAI--DDALPYFSTILV 228 (230)
T ss_pred HHHHHHhccCCeEEEEecCCCHHHHHHHHHHcCC--cccEEEEEECCCCCcEEEcc-ccccC--CCCCCeeEEEEe
Confidence 4466777788999999999899999999999886 33699999999999999987 66663 235677888877
No 75
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=99.97 E-value=1.1e-29 Score=265.17 Aligned_cols=213 Identities=22% Similarity=0.234 Sum_probs=164.0
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEe------cccchHHH-hcCCCc-eEEEe----cccccccchhHHHHH
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYD------ALITNELL-MLCPKA-KHIFV----GKRFKKHSIAQYIIN 803 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~------~~~~~~~~-~~~~~~-~~~~~----~~~~~~~~~~~~~~~ 803 (967)
||++++||+|||+|++||+||+++|++||+|+++ .+....++ .+.+.. ..+.. .+.........+++.
T Consensus 1 m~~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (229)
T PRK05576 1 MGKLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGGGSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKENA 80 (229)
T ss_pred CCEEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCchhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHHHH
Confidence 4689999999999999999999999999999997 23322232 333322 22222 111111112234555
Q ss_pred HHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc
Q psy3751 804 RIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK 883 (967)
Q Consensus 804 ~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~ 883 (967)
+.+...+.+|++|++|++|||+||+++.++++++.+.|++++++|||||+++|+|++|+||+.++....++ +.|. .
T Consensus 81 ~~i~~~~~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~ii--s~~~--~ 156 (229)
T PRK05576 81 EEIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAII--PATR--E 156 (229)
T ss_pred HHHHHHHHcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEE--ECCC--H
Confidence 66777788999999999999999999999999999889999999999999999999999998776544444 4443 3
Q ss_pred ccccccCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEc
Q psy3751 884 NNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIG 960 (967)
Q Consensus 884 ~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg 960 (967)
+.+...++.++++|+|+..+.+..+.+.|.+.|+ ++++++|+|+|+|+++++++.++. .++..+++++-
T Consensus 157 ~~l~~~l~~~~~~vl~~~~~~~~~i~~~l~~~~~----~v~v~e~l~~~~E~i~~~~~~~~~----~~~y~s~ii~~ 225 (229)
T PRK05576 157 ALIEQALTDFDSVVLMKVYKNFALIEELLEEGYL----DALYVRRAYMEGEQILRRLEEILD----DLDYFSTIIAN 225 (229)
T ss_pred HHHHHHhhcCCEEEEEecCCCHHHHHHHHHhcCC----CEEEEEECCCCCeEEEccccccCC----CCCeeEEEEEe
Confidence 4455666778999999988888888888877643 699999999999999999887762 46788888874
No 76
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.96 E-value=1.7e-28 Score=285.77 Aligned_cols=250 Identities=22% Similarity=0.252 Sum_probs=194.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+++||+|||||||+++|.+. .+ .....+|+|++.+...+.++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~------------------------~v---------~~~e~~GIT~~ig~~~v~~~ 132 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKT------------------------KV---------AQGEAGGITQHIGAYHVENE 132 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhC------------------------Cc---------ccccCCceeecceEEEEEEC
Confidence 4568999999999999999999761 11 11223688998888888776
Q ss_pred Cc-eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 403 KR-KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 403 ~~-~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
+. .++|||||||++|...+.+++..+|++|||||+++ +.++||.+++..+...++| +|+++||+|+.+.+.
T Consensus 133 ~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d-------gv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~~ 204 (587)
T TIGR00487 133 DGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD-------GVMPQTIEAISHAKAANVP-IIVAINKIDKPEANP 204 (587)
T ss_pred CCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC-------CCCHhHHHHHHHHHHcCCC-EEEEEECcccccCCH
Confidence 55 89999999999999999999999999999999999 8999999999999889988 999999999976443
Q ss_pred HHHHHHHHHHHH---HHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeec
Q psy3751 482 IFYKRIVYAYKK---FAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVAR 558 (967)
Q Consensus 482 ~~~~~i~~~~~~---~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~ 558 (967)
+ ++.+.+.. ....++ .+.+++|+||++|.|++++.+.+. +. ..+.......+.|++++|.+++.
T Consensus 205 e---~v~~~L~~~g~~~~~~~-~~~~~v~iSAktGeGI~eLl~~I~------~~---~~~~~l~~~~~~~~~~~V~ev~~ 271 (587)
T TIGR00487 205 D---RVKQELSEYGLVPEDWG-GDTIFVPVSALTGDGIDELLDMIL------LQ---SEVEELKANPNGQASGVVIEAQL 271 (587)
T ss_pred H---HHHHHHHHhhhhHHhcC-CCceEEEEECCCCCChHHHHHhhh------hh---hhhccccCCCCCCceeEEEEEEE
Confidence 3 23332222 112222 135899999999999998644321 11 11222223345799999999999
Q ss_pred CCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEe-CccccceeecCCeEEEEEccccCCCCCccccc
Q psy3751 559 HCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQM-LNKSLDMAITGQSVTLIIKEYLDISRGNMLVS 633 (967)
Q Consensus 559 ~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~-~~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~ 633 (967)
..+.| ++++|+|.+|+|++||.|.++|. ..+|++|+. ++..+++|.||+.|.+...+. -...||.+..
T Consensus 272 ~~g~G----~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~Gl~~-~p~aGd~~~~ 340 (587)
T TIGR00487 272 DKGRG----PVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEILGLSD-VPAAGDEFIV 340 (587)
T ss_pred eCCCc----EEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEeCCCC-CCCCCCEEEE
Confidence 88887 89999999999999999999886 478999998 556899999999999875331 1367888764
No 77
>PRK13795 hypothetical protein; Provisional
Probab=99.96 E-value=1.2e-29 Score=299.53 Aligned_cols=213 Identities=28% Similarity=0.392 Sum_probs=174.7
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHcC-CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHH
Q psy3751 12 NNLNNLYLDWLESEAIHIMREVSAEC-NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCI 90 (967)
Q Consensus 12 ~~~~~~~l~~~~~~a~~~i~~~~~~~-~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~ 90 (967)
-++|..+|+.++++++++|+++++.+ ++++|+|||||||+|+|||+.++.. ++.++|+|||++||+|++++++++
T Consensus 217 ~~~n~~~l~~~~~~ai~~Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~~----~~~vvfiDTg~efpet~e~v~~~~ 292 (636)
T PRK13795 217 IEANRKHLEEKEKEAVNFIRGVAEKYNLPVSVSFSGGKDSLVVLDLAREALK----DFKAFFNNTGLEFPETVENVKEVA 292 (636)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhCC----CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46778899999999999999999876 5688999999999999999999843 589999999999999999999999
Q ss_pred HHhCCcEEEEecchhhhhcccccCCCCcccchh---hcHHHHHHHHHHc--CCcEEEEeccchhhHhhhccccccccccC
Q psy3751 91 SKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNA---AQSITLLETIKEF--KFDACIGGARRDEEKARAKERIFSFRDKF 165 (967)
Q Consensus 91 ~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~G~R~des~~R~~~~~~~~~~~~ 165 (967)
++||++++++.+...++......+.|....+|| +|..++.+++++. ...++++|.|++||..|+.++.++.+..
T Consensus 293 ~~~gi~i~~~~~~~~f~~~~~~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~~R~~~~~~~~~~~- 371 (636)
T PRK13795 293 EEYGIELIEADAGDAFWRAVEKFGPPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESFSRAKSPRVWRNPW- 371 (636)
T ss_pred HHcCCcEEEEcccHhHHHhhhccCCCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchHHHhhCcccccCCC-
Confidence 999999999998878877655555554444333 4567777777775 2358899999999999998765442211
Q ss_pred CCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCC
Q psy3751 166 GQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPG 245 (967)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~ 245 (967)
.++.++++||++||..|||.||..+++||||||
T Consensus 372 ---------------------~~~~~~~~PI~~Wt~~dVw~YI~~~~lp~npLY-------------------------- 404 (636)
T PRK13795 372 ---------------------VPNQIGASPIQDWTALEVWLYIFWRKLPYNPLY-------------------------- 404 (636)
T ss_pred ---------------------CCCcEEEechHhCCHHHHHHHHHHhCCCCChHH--------------------------
Confidence 023578999999999999999999999999999
Q ss_pred ccceeeeEEEeccccccccccccCCcCChHHHHHhhh
Q psy3751 246 EIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEIS 282 (967)
Q Consensus 246 ~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~ 282 (967)
..+|.|.|||+||.+...+...+.+.-++++
T Consensus 405 ------~~Gy~riGC~~Cp~~~~~e~~~~~~~~Pe~~ 435 (636)
T PRK13795 405 ------ERGFDRIGCWLCPSSSLAEFERLKELHPELY 435 (636)
T ss_pred ------HCCCCCCCccCCCCCCHHHHHHHHHHCHHHH
Confidence 6899999999999987776666655444443
No 78
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.96 E-value=1.4e-29 Score=259.95 Aligned_cols=201 Identities=22% Similarity=0.277 Sum_probs=155.7
Q ss_pred EEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCeEEEEE
Q psy3751 741 IIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVVRLK 820 (967)
Q Consensus 741 ~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv~l~ 820 (967)
+||+|||+|++||+||+++|++||+|+++.+..+.+..+.+........ ...+++..+.+...+. |++||+|+
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~-g~~vv~l~ 73 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGERHLELLAELIGEKREIILT------YKDLDELLEFIAATRK-EKRVVVLA 73 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEechhhHHHHhhhcCCceEeccC------cCCHHHHHHHHHHhcC-CCCEEEEe
Confidence 5899999999999999999999999999988877665544332222211 1234555556666655 89999999
Q ss_pred cCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccccc-ccccCCCCCcEEEE
Q psy3751 821 GGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNN-YLKNIPISDTLVEY 899 (967)
Q Consensus 821 ~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~vl~ 899 (967)
+|||++|+++.++.+.+.+ .+++++|||||+++|+|++|+||++ +.+++.|....+. ....+...+++++|
T Consensus 74 ~GDP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~------~~~is~~~~~~~~~~~~~l~~~~~~vvl 145 (204)
T TIGR02467 74 SGDPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQD------AVVISLHGRELDELLLALLRGHRKVAVL 145 (204)
T ss_pred cCCCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhh------CeEEEeeCCCCcHHHHHHHhcCCcEEEE
Confidence 9999999999999998865 3799999999999999999999953 3344555443222 22334456677777
Q ss_pred ecc-ccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEE
Q psy3751 900 MGG-NNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVL 956 (967)
Q Consensus 900 ~~~-~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~v 956 (967)
+.. ..+.++++.|.+.|+++.+++++++++|+|+|+++.++++++.+..+++...+|
T Consensus 146 ~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~ 203 (204)
T TIGR02467 146 TDPRNGPAEIARELIELGIGGSYELTVGENLGYEDERITEGTLEEIAAAQFDFSPLLV 203 (204)
T ss_pred eCCCCCHHHHHHHHHHCCCCCCeEEEEEcccCCCCeEEEeCCHHHHhhcccCCcccee
Confidence 765 779999999999999877799999999999999999999999865556655544
No 79
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=99.96 E-value=9.5e-29 Score=260.91 Aligned_cols=212 Identities=25% Similarity=0.296 Sum_probs=161.6
Q ss_pred EEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCeEEE
Q psy3751 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVVR 818 (967)
Q Consensus 739 ~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv~ 818 (967)
+++||+|||+|++||++|+++|++||+|+++.+..+.+..+.+....+... . ....+....++..+.+|++||+
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~~~~~v~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~g~~Vv~ 74 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKTYLDLIEDLIPGKEVVTSG-M-----REEIARAELAIELAAEGRTVAL 74 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECccHHHHHHhhCCCCEEEeCC-C-----hHHHHHHHHHHHHHhCCCCEEE
Confidence 489999999999999999999999999999887665554443333322211 1 1111222345566788999999
Q ss_pred EEcCCCCCCCchHHHHHHHHHCC--CcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccc--cccc----cccccC
Q psy3751 819 LKGGDPMLFGRTDEELNALKKYN--IKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSST--MLKN----NYLKNI 890 (967)
Q Consensus 819 l~~GDP~~~~~~~~l~~~l~~~~--i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~--~~~~----~~~~~~ 890 (967)
|++|||+|||++.++.+.+++.+ ++++++|||||+++|+|++|+||++.. .+.+.|. .+.. .+...+
T Consensus 75 l~~GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~~-----~~is~~~~~~~~~~~~~~l~~~~ 149 (239)
T TIGR01466 75 VSSGDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDF-----CVISLSDLLTPWPEIEKRLRAAA 149 (239)
T ss_pred EecCCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCccccc-----EEEECCCCCCCchHHHHHHHHHh
Confidence 99999999999999999998875 599999999999999999999997543 2333333 1211 123333
Q ss_pred CCCCcEEEEecc-----ccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcCCCC
Q psy3751 891 PISDTLVEYMGG-----NNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLK 964 (967)
Q Consensus 891 ~~~~t~vl~~~~-----~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~~~~ 964 (967)
....++++|++. .++.++++.|.+. ++.++++++++|+|+|+|+++.++++++.+ ..++.++++++++..+
T Consensus 150 ~~~~~~vl~~~~~~~~~~~~~~i~~~L~~~-~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~--~~~~~~s~iii~~~~~ 225 (239)
T TIGR01466 150 EADFVIAIYNPRSKRRPEQFRRAMEILLEH-RKPDTPVGIVRNAGREGEEVEITTLAELDE--ELIDMLTTVIIGNSET 225 (239)
T ss_pred CCCcEEEEECCcccchhhhHHHHHHHHHhc-CCCCCEEEEEEECCCCCeEEEEEEHHHHhh--cCCCCCeEEEECCchh
Confidence 445678888864 3788888889886 456889999999999999999999999964 3678999999998653
No 80
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.96 E-value=1.8e-28 Score=291.02 Aligned_cols=252 Identities=22% Similarity=0.258 Sum_probs=199.1
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
....+|+++||+|||||||+++|... . + .....+|+|++++...+.+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~--~----------------------v---------~~~e~~GIT~~iga~~v~~ 334 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT--N----------------------V---------AAGEAGGITQHIGAYQVET 334 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--C----------------------c---------cccccCceeeeccEEEEEE
Confidence 46678999999999999999999751 0 1 1122368999999888998
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
++..++|||||||++|...+.++++.+|++|||||+++ |+++||.+++..+...++| +|||+||||+.+++.
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-------Gv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~~ 406 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-------GVMPQTIEAINHAKAAGVP-IIVAINKIDKPGANP 406 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-------CCCHhHHHHHHHHHhcCCc-EEEEEECccccccCH
Confidence 88999999999999999999999999999999999999 8999999999999999988 999999999986543
Q ss_pred HHHHHHHHHHHH---HHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeec
Q psy3751 482 IFYKRIVYAYKK---FAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVAR 558 (967)
Q Consensus 482 ~~~~~i~~~~~~---~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~ 558 (967)
. .+..++.. +.+.++ .+++++++||++|.|++++.+.+.|. .+.++ .....+.|+...|.+++.
T Consensus 407 e---~V~~eL~~~~~~~e~~g-~~vp~vpvSAktG~GI~eLle~I~~~-----~e~~~----l~~~~~~~~~g~V~es~~ 473 (787)
T PRK05306 407 D---RVKQELSEYGLVPEEWG-GDTIFVPVSAKTGEGIDELLEAILLQ-----AEVLE----LKANPDRPARGTVIEAKL 473 (787)
T ss_pred H---HHHHHHHHhcccHHHhC-CCceEEEEeCCCCCCchHHHHhhhhh-----hhhhh----cccCCCCCcEEEEEEEEE
Confidence 3 23333322 222233 24689999999999999976654431 11111 223345788899999988
Q ss_pred CCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeC-ccccceeecCCeEEEEEccccCCCCCcccccC
Q psy3751 559 HCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQML-NKSLDMAITGQSVTLIIKEYLDISRGNMLVSP 634 (967)
Q Consensus 559 ~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~-~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~ 634 (967)
..+.| ++++|+|.+|+|++||.|++++ ...+|++|+.. +.++++|.||+.|.+...+.. ...||+|+..
T Consensus 474 dkg~G----~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~-p~~Gd~l~~~ 543 (787)
T PRK05306 474 DKGRG----PVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGV-PQAGDEFVVV 543 (787)
T ss_pred cCCCe----EEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCC-CCCCCEEEEc
Confidence 88887 8999999999999999999975 46899999985 568999999999998754321 2689998854
No 81
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=99.96 E-value=1.1e-29 Score=255.75 Aligned_cols=166 Identities=22% Similarity=0.350 Sum_probs=134.3
Q ss_pred cChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchh-hhhcccccCCC----C-cc
Q psy3751 46 GGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDS-IMKGTVRLRKP----N-TD 119 (967)
Q Consensus 46 GGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~-~~~~~~~~~~~----~-~~ 119 (967)
+|.||+|||||+.+++ ++++++|+|||++||||++|+++++++||++++++.++.. .+......+.+ . +.
T Consensus 1 f~~~s~Vll~L~~~~~----~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 76 (191)
T TIGR02055 1 LGAEDVVLVDLAAKVR----PDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPH 76 (191)
T ss_pred CChHHHHHHHHHHhcC----CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchH
Confidence 5899999999999994 4689999999999999999999999999999999976532 22211112221 1 34
Q ss_pred cchh-hcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeCCC
Q psy3751 120 SRNA-AQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISN 198 (967)
Q Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~ 198 (967)
.||. +|..++.++++ +.++|++|.|++||..|+.+++++.+... +.++++||++
T Consensus 77 ~cc~~~K~~Pl~~~l~--~~~~~i~G~Rr~Es~~R~~~~~~~~~~~~-----------------------~~~~~~Pi~~ 131 (191)
T TIGR02055 77 ECCGIRKVEPLKRALA--GVSAWITGLRRDQSPTRAQAPFLEIDEAF-----------------------GLVKINPLAD 131 (191)
T ss_pred HHHHHHhHHHHHHHHh--cCCEEEEEeccccCchhcCCceeeecCCC-----------------------CeEEEEeccc
Confidence 4554 55566666665 46799999999999999998877755432 1478999999
Q ss_pred CcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEEEeccccccccccccCCcC
Q psy3751 199 WTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNAT 272 (967)
Q Consensus 199 wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~ 272 (967)
||+.|||+|+++++||+|||| ..+|.|.||++||.++.++++
T Consensus 132 Wt~~dVw~Yi~~~~lp~npLY--------------------------------~~Gy~siGC~~Ct~~~~~~~~ 173 (191)
T TIGR02055 132 WTSEDVWEYIADNELPYNPLH--------------------------------DRGYPSIGCEPCTRPVAPGED 173 (191)
T ss_pred CCHHHHHHHHHHcCCCCChHH--------------------------------HcCCCCCCCcCCCCCCCCCCC
Confidence 999999999999999999999 689999999999999998854
No 82
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=99.96 E-value=7.7e-29 Score=256.86 Aligned_cols=205 Identities=24% Similarity=0.272 Sum_probs=156.1
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCeEE
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVV 817 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv 817 (967)
++++||+|||+|++||+||+++|++||+|+++.+..+.+..+.+....+.. ...++..+.+. .+.+|++||
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~-~~~~g~~V~ 71 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSKRVLELFPELIDGEAFVLT--------AGLRDLLEWLE-LAAKGKNVV 71 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcHhHHHHHHHhccCccEEec--------CCHHHHHHHHH-HhhCCCcEE
Confidence 379999999999999999999999999999988777666555432222211 01122223333 567899999
Q ss_pred EEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc--cccccCCCCCc
Q psy3751 818 RLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN--NYLKNIPISDT 895 (967)
Q Consensus 818 ~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~t 895 (967)
+|++|||+|||.+..+.+.+ ..+++++++|||||+++|+|++|+||++ +.+++.|.+... .+..++..+++
T Consensus 72 ~l~~GDP~~~~~~~~~~~~~-~~~~~veviPGiSs~~aaaa~~g~~l~~------~~~is~~~~~~~~~~l~~~~~~~~~ 144 (210)
T PRK05787 72 VLSTGDPLFSGLGKLLKVRR-AVAEDVEVIPGISSVQYAAARLGIDMND------VVFTTSHGRGPNFEELEDLLKNGRK 144 (210)
T ss_pred EEecCCccccccHHHHHHHh-ccCCCeEEEcCHHHHHHHHHHhCCCHHH------cEEEeecCCCcchHHHHHHHHcCCe
Confidence 99999999999766665544 3358999999999999999999999974 334444543322 24455555667
Q ss_pred EEEEe-ccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcC
Q psy3751 896 LVEYM-GGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGK 961 (967)
Q Consensus 896 ~vl~~-~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~ 961 (967)
+++|+ +..++.++++.|.+.| ++++++++++|+|+|+|+++.++++++.. .++..++++++.+
T Consensus 145 ~v~l~~~~~~~~~i~~~L~~~g-~~~~~~~v~~~l~~~~E~i~~~~l~~~~~--~~~~~~s~v~v~~ 208 (210)
T PRK05787 145 VIMLPDPRFGPKEIAAELLERG-KLERRIVVGENLSYPDERIHKLTLSEIEP--LEFSDMSVVVILD 208 (210)
T ss_pred EEEEcCCCCCHHHHHHHHHhCC-CCCcEEEEEEeCCCCCeEEEeCCHHHHhh--cccCCcEEEEEec
Confidence 77777 5568999999999988 56889999999999999999999998854 4577889998864
No 83
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.96 E-value=2.5e-28 Score=295.73 Aligned_cols=285 Identities=20% Similarity=0.177 Sum_probs=215.7
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
....++||+++||+|||||||+++|++..|.+..+. .| .++++|+.++|++||+|++.+...+
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g-------~~~~~D~~~~E~~rgiTi~~~~~~~ 78 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AG-------EQLALDFDEEEQARGITIKAANVSM 78 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cC-------cceecCccHHHHHhhhhhhccceEE
Confidence 345788999999999999999999999888875421 11 1456999999999999999887655
Q ss_pred ec----CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 400 NT----PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 400 ~~----~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
.+ .+..++|+|||||.+|..++.++++.+|++|+|||+.+ |+..||+.++..+...+++ .|+++||||
T Consensus 79 ~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~-------g~~~~t~~~~~~~~~~~~~-~iv~iNK~D 150 (731)
T PRK07560 79 VHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE-------GVMPQTETVLRQALRERVK-PVLFINKVD 150 (731)
T ss_pred EEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC-------CCCccHHHHHHHHHHcCCC-eEEEEECch
Confidence 44 46789999999999999999999999999999999999 8999999999998888987 588899999
Q ss_pred ccCc--------CHHHHHHHHHHHHHHHHHcCC-----------ccceEEeccccCCCccccc--ccC------------
Q psy3751 476 LINY--------NQIFYKRIVYAYKKFAEDIHF-----------QNINTIPISALNGDNIISA--SNN------------ 522 (967)
Q Consensus 476 ~~~~--------~~~~~~~i~~~~~~~~~~~~~-----------~~~~ii~iSa~~g~gi~~l--~~~------------ 522 (967)
+... .+.++.++.+++..++..+.. .+-++++.||+.+.+.... .+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~ 230 (731)
T PRK07560 151 RLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYE 230 (731)
T ss_pred hhcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHh
Confidence 8632 234555555666666554321 1235677899988777510 000
Q ss_pred -------CCCCCC-CcHHHHhhc-ccCCCc-------------------------CCCCCceeeEEEeecCCCccCCCce
Q psy3751 523 -------MLWYNG-PTLISLLES-LNTNEK-------------------------IDKKPLRFPVQLVARHCGHISKDFR 568 (967)
Q Consensus 523 -------~~w~~~-~~L~~~l~~-~~~~~~-------------------------~~~~~~~~~i~~v~~~~~~~~~~~~ 568 (967)
..|++- ..|++.+.. +|.|.. +.+.|+.+.|.++...++.| +
T Consensus 231 ~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G----~ 306 (731)
T PRK07560 231 KGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAG----E 306 (731)
T ss_pred cCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCC----e
Confidence 001100 124444433 565531 12457888888888777666 8
Q ss_pred EEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeecCCeEEEEEccccCCCCCcccccCC
Q psy3751 569 GYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIKEYLDISRGNMLVSPF 635 (967)
Q Consensus 569 v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~ 635 (967)
+.+|||.+|+|++||.|++.+.+.+.+|+.|.... .++++|.||++|++... .++.+||+|+.+.
T Consensus 307 va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl--~~~~~GdtL~~~~ 375 (731)
T PRK07560 307 VATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGL--KDARAGETVVSVE 375 (731)
T ss_pred EEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcc--cccccCCEEeCCC
Confidence 89999999999999999999988888999998663 47999999999999643 3567899998753
No 84
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=99.96 E-value=1.8e-28 Score=238.59 Aligned_cols=217 Identities=24% Similarity=0.308 Sum_probs=172.1
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHH-HHHHHHHhcCC
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIIN-RIIVKCAFKYN 814 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~ 814 (967)
.|++|+||+|||++++||.+|.++|++||+|++...+.+.+- +.+.++....+ +.++... +..++.+++|+
T Consensus 2 ~G~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~Y~d~i~-l~~~k~v~~s~-------m~~Ei~Ra~~AielA~~G~ 73 (249)
T COG1010 2 TGKLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYLDLIE-LRPGKEVIRSG-------MREEIERAKEAIELAAEGR 73 (249)
T ss_pred CceEEEEEeCCCChhhCCHHHHHHHHhCCEEEecHHHHHHHh-cCCCCEEEeCC-------cHhHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999999999999887776654 33333333222 2232222 45678899999
Q ss_pred eEEEEEcCCCCCCCchHHHHHHHHHCC---CcEEEEcCchHHHHHHHhcCCccccCceeeEE--Eeeccccccccccccc
Q psy3751 815 LVVRLKGGDPMLFGRTDEELNALKKYN---IKVKVIPGITAALAAASESKQSLTKRNISRSV--VLFTSSTMLKNNYLKN 889 (967)
Q Consensus 815 ~Vv~l~~GDP~~~~~~~~l~~~l~~~~---i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ 889 (967)
+|+++.+|||++|+.+....+.+.+.| ++++|+|||||+++|||++|-||.+.+...|. ++.+... -+..+..+
T Consensus 74 ~ValVSsGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPwe~-IekRl~aA 152 (249)
T COG1010 74 DVALVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPWEV-IEKRLRAA 152 (249)
T ss_pred eEEEEeCCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHhcCCcHHH-HHHHHHHH
Confidence 999999999999999999999999765 89999999999999999999999765433222 1111111 12345666
Q ss_pred CCCCCcEEEEecc-----ccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcCCC
Q psy3751 890 IPISDTLVEYMGG-----NNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSL 963 (967)
Q Consensus 890 ~~~~~t~vl~~~~-----~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~~~ 963 (967)
+..+-+++||.+. +++.+..+.|.++ .++++||.++.++++++|.+...||+++.+ .....+.++++||.+-
T Consensus 153 A~adfVi~~YNP~s~~R~~~~~~a~eil~~~-r~~~tpVgivrnagR~~e~v~ittL~~l~~-~~~iDM~T~vIIGns~ 229 (249)
T COG1010 153 AEADFVIALYNPISKRRPEQLGRAFEILREH-RSPDTPVGIVRNAGREGEEVRITTLGDLDE-AEEIDMRTIVIIGNSE 229 (249)
T ss_pred hhCCEEEEEECCccccchHHHHHHHHHHHHh-cCCCCcEEEEecCCCCCceEEEEEhHHhcc-cccccceEEEEEcCCc
Confidence 6678899999963 3567888999998 788999999999999999999999999974 3557899999999764
No 85
>PRK00007 elongation factor G; Reviewed
Probab=99.96 E-value=8.8e-28 Score=289.31 Aligned_cols=281 Identities=21% Similarity=0.227 Sum_probs=207.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
....++||+|+||+|||||||+++|++.+|.+.. .|. ..+..+++|+.+.|+++|+|++.....+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~------------~g~---v~~~~~~~D~~~~E~~rg~ti~~~~~~~ 70 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHK------------IGE---VHDGAATMDWMEQEQERGITITSAATTC 70 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccc------------ccc---ccCCcccCCCCHHHHhCCCCEeccEEEE
Confidence 3457899999999999999999999987776521 111 1123578999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
.+.+++++|+|||||.+|..++.++++.+|++|+|||+.+ |++.|+++++..+...+++ +|+++||||+.+.
T Consensus 71 ~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~-------g~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~ 142 (693)
T PRK00007 71 FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG-------GVEPQSETVWRQADKYKVP-RIAFVNKMDRTGA 142 (693)
T ss_pred EECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC-------CcchhhHHHHHHHHHcCCC-EEEEEECCCCCCC
Confidence 9999999999999999999999999999999999999999 9999999999999999998 6789999999865
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc-cceEEeccccCC-CcccccccC--CCC------------------------------
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ-NINTIPISALNG-DNIISASNN--MLW------------------------------ 525 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~-~~~ii~iSa~~g-~gi~~l~~~--~~w------------------------------ 525 (967)
+ +..+.+++++.+ +.. -...+|+|+..+ .|+.++... ..|
T Consensus 143 ~---~~~~~~~i~~~l---~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (693)
T PRK00007 143 D---FYRVVEQIKDRL---GANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLI 216 (693)
T ss_pred C---HHHHHHHHHHHh---CCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHH
Confidence 4 223333333322 221 124456666555 122111100 001
Q ss_pred --------------------------------------C--------CC---CcHHHHh-hcccCCCc------------
Q psy3751 526 --------------------------------------Y--------NG---PTLISLL-ESLNTNEK------------ 543 (967)
Q Consensus 526 --------------------------------------~--------~~---~~L~~~l-~~~~~~~~------------ 543 (967)
. .+ ..|++.+ ..+|.|..
T Consensus 217 e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~ 296 (693)
T PRK00007 217 EAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGE 296 (693)
T ss_pred HHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCcc
Confidence 0 00 1144433 33555531
Q ss_pred --------CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeec
Q psy3751 544 --------IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAIT 611 (967)
Q Consensus 544 --------~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~ 611 (967)
+.+.|+...|.++...+..| ++..+||.+|+|+.||.|+....+++.+|.+|.... .+++++.|
T Consensus 297 ~~~~~~~~~~~~~l~a~VfK~~~d~~~G----~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~a 372 (693)
T PRK00007 297 EEEVERKASDDEPFSALAFKIMTDPFVG----KLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRA 372 (693)
T ss_pred ccceeecCCCCCCeEEEEEEeeecCCCC----cEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCC
Confidence 12457878888887766655 789999999999999999977666778888887654 47999999
Q ss_pred CCeEEEEEccccCCCCCcccccCC
Q psy3751 612 GQSVTLIIKEYLDISRGNMLVSPF 635 (967)
Q Consensus 612 G~~v~l~l~~~~~i~~G~vl~~~~ 635 (967)
|+++++... .+++.||+|++.+
T Consensus 373 GdI~~i~gl--~~~~~GdtL~~~~ 394 (693)
T PRK00007 373 GDIAAAVGL--KDTTTGDTLCDEK 394 (693)
T ss_pred CcEEEEeCC--ccCCcCCEeeCCC
Confidence 999999653 2467899998753
No 86
>PRK12739 elongation factor G; Reviewed
Probab=99.96 E-value=1.1e-27 Score=288.91 Aligned_cols=272 Identities=21% Similarity=0.203 Sum_probs=206.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
....++||+|+||+|||||||+++|++.+|.+.. .|. ..+..+++|+.+.|+++|+|++.....+
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~------------~~~---v~~~~~~~D~~~~E~~rgiti~~~~~~~ 68 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHK------------IGE---VHDGAATMDWMEQEQERGITITSAATTC 68 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccc------------ccc---ccCCccccCCChhHhhcCCCccceeEEE
Confidence 3457899999999999999999999987776521 111 1123578999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++++++++|+|||||.+|..++..+++.+|++|+|||+.+ |+..|+++++..+...++| +|+++||||+.+.
T Consensus 69 ~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~-------g~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~ 140 (691)
T PRK12739 69 FWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVS-------GVEPQSETVWRQADKYGVP-RIVFVNKMDRIGA 140 (691)
T ss_pred EECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCC-------CCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCC
Confidence 9999999999999999999999999999999999999999 8899999999999999988 6789999999864
Q ss_pred CHHHHHHHHHHHHHHHHHcCC-----------------------------------------------------------
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHF----------------------------------------------------------- 500 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~----------------------------------------------------------- 500 (967)
+ +..+.++++..+.....
T Consensus 141 ~---~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v 217 (691)
T PRK12739 141 D---FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAV 217 (691)
T ss_pred C---HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhh
Confidence 3 22333333333221000
Q ss_pred ---------------------------------ccceEEeccccCCCcccccccCCCCCCCCcHHHHh-hcccCCCc---
Q psy3751 501 ---------------------------------QNINTIPISALNGDNIISASNNMLWYNGPTLISLL-ESLNTNEK--- 543 (967)
Q Consensus 501 ---------------------------------~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l-~~~~~~~~--- 543 (967)
+-+|++..||.++.|+.. |++.+ ..+|.|..
T Consensus 218 ~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------LLd~I~~~lPsP~~~~~ 285 (691)
T PRK12739 218 AEVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDVPA 285 (691)
T ss_pred hhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH------------HHHHHHHHCCChhhccc
Confidence 012344445555555544 44443 33555421
Q ss_pred ----------------CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----
Q psy3751 544 ----------------IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN---- 603 (967)
Q Consensus 544 ----------------~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~---- 603 (967)
+.+.|+...|.++...+..| ++..+||.+|+|+.||.|+....+++.+|.+|....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G----~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~ 361 (691)
T PRK12739 286 IKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVG----RLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKR 361 (691)
T ss_pred cccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCC----eEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCc
Confidence 23457888888888776655 788999999999999999887777778888876543
Q ss_pred cccceeecCCeEEEEEccccCCCCCcccccCC
Q psy3751 604 KSLDMAITGQSVTLIIKEYLDISRGNMLVSPF 635 (967)
Q Consensus 604 ~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~ 635 (967)
.+++++.|||++++.... +++.||+|++..
T Consensus 362 ~~v~~~~aGdI~~i~gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 362 EEIKEVYAGDIAAAVGLK--DTTTGDTLCDEK 391 (691)
T ss_pred ccccccCCCCEEEEeCCC--cccCCCEEeCCC
Confidence 478999999999998432 468899998753
No 87
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=99.96 E-value=3.4e-28 Score=256.74 Aligned_cols=211 Identities=17% Similarity=0.178 Sum_probs=155.8
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHH--HHHHHHHhcCC
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIIN--RIIVKCAFKYN 814 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~ 814 (967)
|.+++||+|||+|++||++|+++|++||+|++..+..+.+... .. .... .. ...+.+. ..++..+.+|+
T Consensus 3 ~~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~~~l~~~~~~-~~--~~~~----~~--~~~~~~~~~~~~~~~~~~g~ 73 (250)
T PRK05991 3 GRLFVIGTGPGNPEQMTPEALAAVEAATDFFGYGPYLDRLPLR-AD--QLRH----AS--DNREELDRAGAALAMAAAGA 73 (250)
T ss_pred ceEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcHHHHHhhhcc-cc--cccc----CC--CCHHHHHHHHHHHHHHHCCC
Confidence 6799999999999999999999999999999976554433211 11 1111 01 1111111 22355667899
Q ss_pred eEEEEEcCCCCCCCchHHHHHHHHH-----CCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccc--ccc----
Q psy3751 815 LVVRLKGGDPMLFGRTDEELNALKK-----YNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSST--MLK---- 883 (967)
Q Consensus 815 ~Vv~l~~GDP~~~~~~~~l~~~l~~-----~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~--~~~---- 883 (967)
+||+|++|||+||+++.++.+++++ .+++++++|||||+++|+|++|+||++... +.+.|. .+.
T Consensus 74 ~Vv~l~~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~~~-----~~s~~~~~~~~~~l~ 148 (250)
T PRK05991 74 NVCVVSGGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHDFC-----AISLSDNLKPWELIE 148 (250)
T ss_pred eEEEEeCCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCCCE-----EeecccCCCCHHHHH
Confidence 9999999999999999999999985 368999999999999999999999975432 233332 111
Q ss_pred ccccccCCCCCcEEEEeccc-----cHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEE
Q psy3751 884 NNYLKNIPISDTLVEYMGGN-----NIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFM 958 (967)
Q Consensus 884 ~~~~~~~~~~~t~vl~~~~~-----~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~ 958 (967)
+.+........++|||++.. .+.+..+.|.+. +.++.++++++|+|+|+|+++.+++.++.. .....+++++
T Consensus 149 ~~l~~~~~~~~~~vl~~~~~~~~p~~l~~~~~~L~~~-~~~~~~v~v~~~lg~~dE~i~~~~l~el~~--~~~~~~s~vi 225 (250)
T PRK05991 149 KRLRLAAEAGFVIALYNPISRARPWQLGEAFDLLREH-LPATVPVIFGRAAGRPDERIAVAPLAEADA--SMADMATCVI 225 (250)
T ss_pred HHHHhhcCCCeEEEEECCccccchhhHHHHHHHHHhc-CCCCCEEEEEEeCCCCCcEEEEEEHHHhhh--hccCCCeEEE
Confidence 12223334577899997532 444555777665 667889999999999999999999999974 3467899999
Q ss_pred EcCCCC
Q psy3751 959 IGKSLK 964 (967)
Q Consensus 959 vg~~~~ 964 (967)
||.++.
T Consensus 226 vg~~~~ 231 (250)
T PRK05991 226 IGSAET 231 (250)
T ss_pred ECCCcc
Confidence 999885
No 88
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=99.96 E-value=1.1e-28 Score=244.08 Aligned_cols=208 Identities=22% Similarity=0.190 Sum_probs=162.8
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCeEE
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVV 817 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv 817 (967)
++++||+|||++++||.+|+++|++||+|++..|..+.+..+.. +........ ...+.+ +.+... ..|++||
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~G~kr~L~~~~~~~~-~~~~~~~~~-----~~~~~l-~~i~~~-~~g~~v~ 72 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGSKRHLELLPPLIK-AERIIWPYP-----FDAESL-EEILAE-RKGRDVV 72 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEeecHHHHHhhhcccc-ceEEEeccc-----cchHHH-HHHHHH-hCCCCeE
Confidence 46899999999999999999999999999999988776655443 222222111 111122 222222 2289999
Q ss_pred EEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccccccccCCCCCcEE
Q psy3751 818 RLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLV 897 (967)
Q Consensus 818 ~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v 897 (967)
+|.+|||+||+.+..+.+.+... +++|||||||+|+|||++|++|.+ +.+.|.|+++.+.+..++..+..++
T Consensus 73 VLasGDP~f~G~g~~l~~~~~~~--~v~iIPgiSS~q~a~ARlg~~~~~------~~~islHgr~~~~l~~~~~~~~~~v 144 (210)
T COG2241 73 VLASGDPLFSGVGRLLRRKFSCE--EVEIIPGISSVQLAAARLGWPLQD------TEVISLHGRPVELLRPLLENGRRLV 144 (210)
T ss_pred EEecCCcchhhhHHHHHHhcCcc--ceEEecChhHHHHHHHHhCCChHH------eEEEEecCCCHHHHHHHHhCCceEE
Confidence 99999999999999998888764 899999999999999999999965 5566777766666665666666666
Q ss_pred EEec-cccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcCCCC
Q psy3751 898 EYMG-GNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLK 964 (967)
Q Consensus 898 l~~~-~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~~~~ 964 (967)
++.+ ...+.++++.|.+.|+. +++++|+||||+++||++.++++++.. .++...+|++|....+
T Consensus 145 il~~~~~~P~~IA~~L~~~G~~-~~~~~VlE~L~~~~Eri~~~~~~~~~~--~~fsdlnVv~v~~~~~ 209 (210)
T COG2241 145 ILTPDDFGPAEIAKLLTENGIG-DSRVTVLENLGYPDERITDGTAEDIAA--EEFSDLNVVAVEKRAP 209 (210)
T ss_pred EeCCCCCCHHHHHHHHHhCCCC-CceEEEEcccCCCchhhhcCchhhhcc--cccCCceEEEEEccCC
Confidence 6665 45688999999999997 788999999999999999999999975 3377889999876543
No 89
>PRK08576 hypothetical protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=271.42 Aligned_cols=194 Identities=26% Similarity=0.322 Sum_probs=150.0
Q ss_pred cChhHHHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHh
Q psy3751 14 LNNLYLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKL 93 (967)
Q Consensus 14 ~~~~~l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~ 93 (967)
.|..+++..++.+.+.++++- ..+++|+|||||||+|+||++.++.. ++.++|+|||+++|++++++++++++|
T Consensus 213 ~N~~~le~~e~~~~~~Lr~~~--~~rVvVafSGGKDStvLL~La~k~~~----~V~aV~iDTG~e~pet~e~~~~lae~L 286 (438)
T PRK08576 213 ANREVLEAFEKASIKFLRKFE--EWTVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVDTGYEMPLTDEYVEKVAEKL 286 (438)
T ss_pred HhHHHHHHHHHHHHHHHHHcC--CCCEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeCCCCCChHHHHHHHHHHHHc
Confidence 455556666666666666532 13899999999999999999999854 489999999999999999999999999
Q ss_pred CCcEEEEecchhhhhcccccCC--CCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCC
Q psy3751 94 GETLIVRSVEDSIMKGTVRLRK--PNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPK 171 (967)
Q Consensus 94 gi~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~ 171 (967)
|+++++...+... .....+. ..+.+|+.+|..++.+++++++.++|++|+|.+||..|...+.+..+...
T Consensus 287 GI~lii~~v~~~~--~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~dES~~R~~~p~v~~~~~~------ 358 (438)
T PRK08576 287 GVDLIRAGVDVPM--PIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGESARRRLRPPVVERKTN------ 358 (438)
T ss_pred CCCEEEcccCHHH--HhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHhHHhhcCCcccccccC------
Confidence 9999873222111 1111222 23455666777889999999999999999999999988876544322210
Q ss_pred CCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceee
Q psy3751 172 SQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENL 251 (967)
Q Consensus 172 ~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~ 251 (967)
.++..+++||++|+++|||.|+..+++|+||||
T Consensus 359 ---------------~~~v~rI~PL~~Wte~DV~~YI~~~gLP~npLY-------------------------------- 391 (438)
T PRK08576 359 ---------------FGKILVVMPIKFWSGAMVQLYILMNGLELNPLY-------------------------------- 391 (438)
T ss_pred ---------------CCCeEEEeChhhCCHHHHHHHHHHhCCCCCcHH--------------------------------
Confidence 124589999999999999999999999999999
Q ss_pred eEEEecccccccccccc
Q psy3751 252 MVRFRTVGDILCTCPIL 268 (967)
Q Consensus 252 ~~r~~~~gc~~~~~~v~ 268 (967)
..+|.|.||++||....
T Consensus 392 ~~Gy~rIGC~~Cp~~~~ 408 (438)
T PRK08576 392 YKGFYRLGCYICPSLRS 408 (438)
T ss_pred hCCCCccCCcCCcchHh
Confidence 68999999999985443
No 90
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.96 E-value=7.2e-28 Score=250.65 Aligned_cols=199 Identities=20% Similarity=0.245 Sum_probs=145.0
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEEecc-cc--------hHHHh-cC--CCceEEEecccccc----------
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDAL-IT--------NELLM-LC--PKAKHIFVGKRFKK---------- 794 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~-~~--------~~~~~-~~--~~~~~~~~~~~~~~---------- 794 (967)
-.+|+||+||||||+||+||+++|++||+|+++.. .. ..+.. +. +....+.+......
T Consensus 2 ~kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 81 (253)
T PRK08284 2 RRLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADKDDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAAV 81 (253)
T ss_pred cEEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhh
Confidence 36899999999999999999999999999999643 11 22222 22 22333333211111
Q ss_pred ---cchhHHHHHHHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHC---CCcEEEEcCchHHHHHHHhcCCccccCc
Q psy3751 795 ---HSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKY---NIKVKVIPGITAALAAASESKQSLTKRN 868 (967)
Q Consensus 795 ---~~~~~~~~~~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~---~i~v~viPGiss~~aa~a~~g~~l~~~~ 868 (967)
+...++.+.+.+.+.+.+|++||+|++|||+|||++.++.+.+.+. |+++|+||||||+++++|++|+||+...
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~~ 161 (253)
T PRK08284 82 DDWHAARAALYERLIAEELPDGGTGAFLVWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRIG 161 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcCC
Confidence 0112234456788889999999999999999999999999999974 8999999999999999999999998765
Q ss_pred eeeEEEeecccccccccccccCCCCCcEEEEeccc-cHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHh
Q psy3751 869 ISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGN-NIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKK 947 (967)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~vl~~~~~-~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~ 947 (967)
+. +..++++.. . ..++..++++|+|+.+. .+.. |.. ++.++++++|+|+|+|+++++++.++.+.
T Consensus 162 ~~--l~ii~g~~l--~--~~l~~~~~~vvv~k~~~~~~~~----L~~----~~~~v~v~e~l~~p~E~I~~~~l~ei~~~ 227 (253)
T PRK08284 162 EP--VHITTGRRL--A--EGWPAGVDNVVVMLDGECSFRR----LDD----PDLEIWWGAYLGTPDEILIAGPLAEVAEE 227 (253)
T ss_pred ce--EEEEecCch--H--HHHHhcCCcEEEEECCcCCHHH----HcC----CCCEEEEEecCCCCCeEEEEccHHHHHHH
Confidence 43 444444421 1 11234557788777655 4543 322 35579999999999999999999999875
Q ss_pred hc
Q psy3751 948 IF 949 (967)
Q Consensus 948 ~~ 949 (967)
..
T Consensus 228 ~~ 229 (253)
T PRK08284 228 IL 229 (253)
T ss_pred HH
Confidence 43
No 91
>PRK04160 diphthine synthase; Provisional
Probab=99.95 E-value=1.6e-27 Score=253.10 Aligned_cols=215 Identities=24% Similarity=0.127 Sum_probs=151.0
Q ss_pred EEEEecCCCCcccccHHHHhccccccEEEEecccc-------hHHHhcCCCceEEEecccccccchhHHHHHHHHH-HHH
Q psy3751 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALIT-------NELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIV-KCA 810 (967)
Q Consensus 739 ~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 810 (967)
+++||+|||+|++||+||+++|++||+|+++.... +.+..+... ..... .....++..+.++ +.+
T Consensus 2 l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~ 74 (258)
T PRK04160 2 LYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSILMGTTIEKLEELIGK-EIIVL------DREDVEQESEKIILEEA 74 (258)
T ss_pred EEEEECCCCChhhhCHHHHHHHHcCCEEEEecccCccccccHHHHHHHhCC-ceeec------CHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999975432 222222211 11110 0111222223333 444
Q ss_pred hcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc---cc-c
Q psy3751 811 FKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK---NN-Y 886 (967)
Q Consensus 811 ~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~---~~-~ 886 (967)
+ +++||+|++|||+||+++.++++++++.|++++++|||||+++|+|++|+|++..+.+.++.+.+.+..+. .. +
T Consensus 75 ~-~~~Vv~L~sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~~~~~~i~ 153 (258)
T PRK04160 75 K-EKNVAFLTAGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPESPYDVIK 153 (258)
T ss_pred c-CCCEEEEeCCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCCCHHHHHH
Confidence 4 48999999999999999999999999999999999999999999999999998888778877665543221 11 2
Q ss_pred cccCCCCCcEEEEe-----ccccHHHHHHHHHh-------cCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCc
Q psy3751 887 LKNIPISDTLVEYM-----GGNNIFLTAKKLLK-------LGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKP 954 (967)
Q Consensus 887 ~~~~~~~~t~vl~~-----~~~~~~~i~~~L~~-------~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~ 954 (967)
....+..++++++. .......++..|.+ .++++++++++++|+|+++|+++.++++++.+..+.....
T Consensus 154 ~~~~~~~~~~vll~~~~~~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e~l~~~~E~i~~~tl~~l~~~~f~~~~~ 233 (258)
T PRK04160 154 DNLERGLHTLVLLDIKADGRYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGSPDPVVRAGRLEELADYDFGGPLH 233 (258)
T ss_pred HHHhcCCCcEEEEEeccCCcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEEecCCCCceEEEccHHHHhhCCCCCCCE
Confidence 23334456888864 11223334444444 3466799999999999999999999999997543333344
Q ss_pred EEEEEcC
Q psy3751 955 VLFMIGK 961 (967)
Q Consensus 955 ~vi~vg~ 961 (967)
++++.|+
T Consensus 234 ~~ii~~~ 240 (258)
T PRK04160 234 ILIIPGK 240 (258)
T ss_pred EEEEeCC
Confidence 4555544
No 92
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.95 E-value=9.5e-28 Score=244.23 Aligned_cols=171 Identities=37% Similarity=0.561 Sum_probs=149.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee-
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN- 400 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~- 400 (967)
++.+||+++||+|||||||+++|++..+.+......+ .. ...+++.+.|+++|+|++.+...+.
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~-~~--------------~~~~~~~~~e~~~~~ti~~~~~~~~~ 65 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE-TK--------------NAFLDKHPEERERGITIDLSFISFEK 65 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH-HH--------------HCHHHSSHHHHHCTSSSSSEEEEEEB
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccc-cc--------------cccccccchhhhcccccccccccccc
Confidence 4679999999999999999999999888776654433 00 1236889999999999999999998
Q ss_pred -cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 401 -TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 401 -~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
..++.++|+|||||.+|.+++.+++..+|++|+|||+.+ |+..|+.+++..+..+++| +|||+||||+.
T Consensus 66 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~-------g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~-- 135 (188)
T PF00009_consen 66 NENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDAND-------GIQPQTEEHLKILRELGIP-IIVVLNKMDLI-- 135 (188)
T ss_dssp TESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTT-------BSTHHHHHHHHHHHHTT-S-EEEEEETCTSS--
T ss_pred cccccceeecccccccceeecccceecccccceeeeeccc-------ccccccccccccccccccc-eEEeeeeccch--
Confidence 889999999999999999999999999999999999999 9999999999999999999 99999999998
Q ss_pred CHHHHHHHHHHHH-HHHHHcCCc---cceEEeccccCCCcccc
Q psy3751 480 NQIFYKRIVYAYK-KFAEDIHFQ---NINTIPISALNGDNIIS 518 (967)
Q Consensus 480 ~~~~~~~i~~~~~-~~~~~~~~~---~~~ii~iSa~~g~gi~~ 518 (967)
+..+.++.+++. .+++..++. .+|++|+||++|.|+++
T Consensus 136 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~ 177 (188)
T PF00009_consen 136 -EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDE 177 (188)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHH
T ss_pred -hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHH
Confidence 556677777777 666777765 37999999999999998
No 93
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.95 E-value=1.1e-27 Score=248.77 Aligned_cols=197 Identities=19% Similarity=0.212 Sum_probs=145.3
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEeccc---------chHHHh-cC--CCceEEEecc-cccccc--------
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALI---------TNELLM-LC--PKAKHIFVGK-RFKKHS-------- 796 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~---------~~~~~~-~~--~~~~~~~~~~-~~~~~~-------- 796 (967)
.+|+||+||||||+||+||+++|++||+|+++... ..+++. +. +..+.+.... ......
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~~~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~~ 81 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKSDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAVD 81 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhHH
Confidence 57999999999999999999999999999996321 122222 22 2222222211 111111
Q ss_pred ----hhHHHHHHHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHH---CCCcEEEEcCchHHHHHHHhcCCccccCce
Q psy3751 797 ----IAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKK---YNIKVKVIPGITAALAAASESKQSLTKRNI 869 (967)
Q Consensus 797 ----~~~~~~~~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~---~~i~v~viPGiss~~aa~a~~g~~l~~~~~ 869 (967)
..++++.+.+.+.+.+|++||+|++|||+|||++.++.+.+.+ .+++++|+|||||+++|+|++|+||++.+.
T Consensus 82 ~~~~~~~~~~a~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~~ 161 (249)
T TIGR02434 82 DWHAQRADIWAQAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIGE 161 (249)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCCc
Confidence 1223566778888999999999999999999999999999987 468999999999999999999999998654
Q ss_pred eeEEEeeccccccccccccc-CCCCCcEEEEecccc-HHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHh
Q psy3751 870 SRSVVLFTSSTMLKNNYLKN-IPISDTLVEYMGGNN-IFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKK 947 (967)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~-~~~~~t~vl~~~~~~-~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~ 947 (967)
.. .+++++. +... +..++++|+|+...+ +..+. + .+.++++++|+|+|+|+|+.+++.++.+.
T Consensus 162 ~l--~v~~g~~-----l~~~~l~~~~~~vilk~~~~~~~~l~----~----~~~~~~v~e~lg~pdE~I~~~~l~~l~~~ 226 (249)
T TIGR02434 162 PV--QITTGRR-----LAEGGFPEGDTVVVMLDGEQAFQRVD----P----EDIDIYWGAYLGTPDEILISGPLAEVGPR 226 (249)
T ss_pred eE--EEEeccc-----hhhccccCCCeEEEEECCccCHHHhc----C----CCCEEEEEEeCCCCCeEEEEccHHHHHHH
Confidence 33 3333332 2223 456788999987766 55442 2 35579999999999999999999999876
Q ss_pred hc
Q psy3751 948 IF 949 (967)
Q Consensus 948 ~~ 949 (967)
.+
T Consensus 227 ~~ 228 (249)
T TIGR02434 227 IA 228 (249)
T ss_pred HH
Confidence 44
No 94
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.1e-27 Score=273.51 Aligned_cols=271 Identities=23% Similarity=0.243 Sum_probs=210.3
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....+||+|+||.|||||||..+|+..+|.+.. -|+..+.+..||+...|++||+||..+...+.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k---------------~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~ 71 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISK---------------IGEVHDGAATMDWMEQEQERGITITSAATTLF 71 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCC---------------CccccCCCccCCCcHHHHhcCCEEeeeeeEEE
Confidence 567899999999999999999999998887632 23344456779999999999999999999999
Q ss_pred cCC-ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 401 TPK-RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 401 ~~~-~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
+.+ +.|+|||||||-||..++.++++.+|++++||||.+ |+++||...+..+...++| .|+++||||....
T Consensus 72 ~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave-------GV~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a 143 (697)
T COG0480 72 WKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE-------GVEPQTETVWRQADKYGVP-RILFVNKMDRLGA 143 (697)
T ss_pred EcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC-------CeeecHHHHHHHHhhcCCC-eEEEEECcccccc
Confidence 995 999999999999999999999999999999999999 9999999999999999999 5677999998754
Q ss_pred CHHHHHHHHHHHHHHHHH--------------------------------------------------------------
Q psy3751 480 NQIFYKRIVYAYKKFAED-------------------------------------------------------------- 497 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~-------------------------------------------------------------- 497 (967)
+- ....++++..+..
T Consensus 144 ~~---~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~ 220 (697)
T COG0480 144 DF---YLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEF 220 (697)
T ss_pred Ch---hhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhc
Confidence 31 1122222221111
Q ss_pred -------c--C------------------CccceEEeccccCCCcccccccCCCCCCCCcHHHHh-hcccCCCc------
Q psy3751 498 -------I--H------------------FQNINTIPISALNGDNIISASNNMLWYNGPTLISLL-ESLNTNEK------ 543 (967)
Q Consensus 498 -------~--~------------------~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l-~~~~~~~~------ 543 (967)
+ + ..-.|.+.-||.++.|+.. |++++ +.+|.|..
T Consensus 221 de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~------------lLdav~~~lPsP~e~~~~~g 288 (697)
T COG0480 221 DEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDVPPIKG 288 (697)
T ss_pred CHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHH------------HHHHHHHHCCChhhcccccc
Confidence 0 0 0012444444444444443 34433 34555411
Q ss_pred --------------CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCcc----c
Q psy3751 544 --------------IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNK----S 605 (967)
Q Consensus 544 --------------~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~----~ 605 (967)
..+.|+...+.++...+..| ....+||.||+|+.|+.|+....+++.+|..|...+. +
T Consensus 289 ~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g----~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~ 364 (697)
T COG0480 289 DLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVG----KLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREE 364 (697)
T ss_pred cCCccccchhcccCCCCCceEEEEEEeEecCCCC----eEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceee
Confidence 23688998888888877666 6667999999999999999998888999999886654 6
Q ss_pred cceeecCCeEEEEEccccCCCCCcccccCC
Q psy3751 606 LDMAITGQSVTLIIKEYLDISRGNMLVSPF 635 (967)
Q Consensus 606 v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~ 635 (967)
++++.||+++++.... +...||++++.+
T Consensus 365 v~~~~AG~I~a~~Gl~--~~~tGdTl~~~~ 392 (697)
T COG0480 365 VDEVPAGDIVALVGLK--DATTGDTLCDEN 392 (697)
T ss_pred cccccCccEEEEEccc--ccccCCeeecCC
Confidence 8999999999998653 347899999875
No 95
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.95 E-value=6.7e-27 Score=282.33 Aligned_cols=269 Identities=23% Similarity=0.244 Sum_probs=204.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
...+++||+|+||+|||||||+++|++.+|.+.. .+ ...+..+.+|+.+.|+++|+|++.....+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~------------~~---~~~~g~~~~D~~~~e~~rgiti~~~~~~~ 70 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHK------------IG---EVHDGAATMDWMEQEKERGITITSAATTV 70 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccc------------cc---cccCCccccCCCHHHHhcCCCEecceEEE
Confidence 4457889999999999999999999987776521 11 11234578999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++++.+++|+|||||.+|...+..+++.+|++|+|||+.+ +...|+.+++..+...++| +++|+||||+...
T Consensus 71 ~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~-------g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~ 142 (689)
T TIGR00484 71 FWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVG-------GVQPQSETVWRQANRYEVP-RIAFVNKMDKTGA 142 (689)
T ss_pred EECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCC-------CCChhHHHHHHHHHHcCCC-EEEEEECCCCCCC
Confidence 9999999999999999999999999999999999999999 8889999999999889988 6789999999865
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcc-ceEEeccccCC---------------------------------------------
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQN-INTIPISALNG--------------------------------------------- 513 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~-~~ii~iSa~~g--------------------------------------------- 513 (967)
+ +..+.++++..+ +... ..++|+|+..+
T Consensus 143 ~---~~~~~~~i~~~l---~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 216 (689)
T TIGR00484 143 N---FLRVVNQIKQRL---GANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVE 216 (689)
T ss_pred C---HHHHHHHHHHHh---CCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHH
Confidence 4 223333333322 2211 12345555444
Q ss_pred ------------------------------------------------CcccccccCCCCCCCCcHHHHh-hcccCCCc-
Q psy3751 514 ------------------------------------------------DNIISASNNMLWYNGPTLISLL-ESLNTNEK- 543 (967)
Q Consensus 514 ------------------------------------------------~gi~~l~~~~~w~~~~~L~~~l-~~~~~~~~- 543 (967)
.|+.. |++.+ ..+|.|..
T Consensus 217 ~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~------------LLd~I~~~lPsP~~~ 284 (689)
T TIGR00484 217 AVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQL------------LLDAVVDYLPSPTDV 284 (689)
T ss_pred HHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHH------------HHHHHHHHCCCchhc
Confidence 44333 33333 33454421
Q ss_pred ------------------CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc--
Q psy3751 544 ------------------IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN-- 603 (967)
Q Consensus 544 ------------------~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~-- 603 (967)
+.+.||...|.++...+..| .+..+||.+|+|+.||.|+....+.+.+|..|....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G----~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~ 360 (689)
T TIGR00484 285 PAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVG----QLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHAN 360 (689)
T ss_pred ccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCC----eEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecC
Confidence 12457888888888777666 789999999999999999987767677887777553
Q ss_pred --cccceeecCCeEEEEEccccCCCCCcccccCC
Q psy3751 604 --KSLDMAITGQSVTLIIKEYLDISRGNMLVSPF 635 (967)
Q Consensus 604 --~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~ 635 (967)
.+++++.|||++++... .+++.||+|++.+
T Consensus 361 ~~~~v~~~~aGdI~~i~gl--~~~~~gdtl~~~~ 392 (689)
T TIGR00484 361 NREEIKEVRAGDICAAIGL--KDTTTGDTLCDPK 392 (689)
T ss_pred CcccccccCCCCEEEEcCC--CCCCCCCEEeCCC
Confidence 47899999999999653 2467899998753
No 96
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.95 E-value=1.1e-26 Score=268.13 Aligned_cols=276 Identities=19% Similarity=0.193 Sum_probs=204.6
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...+||+|+||+|||||||+++|+...|.+... ....+++ -.....+|+.+.|+++|+|+......+++
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~--------g~v~~~~---~~~~~~~D~~~~E~~rgiSi~~~~~~~~~ 76 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEA--------GTVKGRK---SGRHATSDWMEMEKQRGISVTSSVMQFPY 76 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccc--------ceeeccc---cCccccCCCcHHHHhhCCceeeeeEEEEE
Confidence 467899999999999999999999877765211 0000000 01123478999999999999999999999
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
++.++++||||||.+|...+..+++.+|++|+|||+.+ ++..+++..+..+...++| +++++||||+...+.
T Consensus 77 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~-------gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~ 148 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAK-------GVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREP 148 (526)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCC-------CCCHHHHHHHHHHHhcCCC-EEEEEECCcccccCH
Confidence 99999999999999999999999999999999999998 8888999999998888988 889999999876432
Q ss_pred H-HHHHHHHHHH-----------------------------------------------------HHHH---------Hc
Q psy3751 482 I-FYKRIVYAYK-----------------------------------------------------KFAE---------DI 498 (967)
Q Consensus 482 ~-~~~~i~~~~~-----------------------------------------------------~~~~---------~~ 498 (967)
. .++++.+.+. +++. .+
T Consensus 149 ~~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~l 228 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREEL 228 (526)
T ss_pred HHHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHH
Confidence 1 1122211110 0000 00
Q ss_pred ----------------CCccceEEeccccCCCcccccccCCCCCCCCcHHHHh-hcccCCCcC---------CCCCceee
Q psy3751 499 ----------------HFQNINTIPISALNGDNIISASNNMLWYNGPTLISLL-ESLNTNEKI---------DKKPLRFP 552 (967)
Q Consensus 499 ----------------~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l-~~~~~~~~~---------~~~~~~~~ 552 (967)
.-.-.|++..||+++.|+.. |++.+ +.+|.|... .+.+|...
T Consensus 229 el~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~ 296 (526)
T PRK00741 229 ELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQE------------FLDAFVEWAPAPQPRQTDEREVEPTEEKFSGF 296 (526)
T ss_pred HhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHH------------HHHHHHHHCCCCCcccccceeecCCCCceEEE
Confidence 00125788899999999987 44444 445555321 13456666
Q ss_pred EEEee---cCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeecCCeEEEEEccccCC
Q psy3751 553 VQLVA---RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIKEYLDI 625 (967)
Q Consensus 553 i~~v~---~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~~~~i 625 (967)
|..+. .....| ++...||.||+++.|+.|.....+++.++..+.... .++++|.|||++++.-. .++
T Consensus 297 VFK~~~~m~~~~~g----rlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l--~~~ 370 (526)
T PRK00741 297 VFKIQANMDPKHRD----RIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNH--GTI 370 (526)
T ss_pred EEEEEecCCCCcCc----eEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECC--CCC
Confidence 66665 223444 889999999999999999999988888888866443 36899999999988753 457
Q ss_pred CCCcccccC
Q psy3751 626 SRGNMLVSP 634 (967)
Q Consensus 626 ~~G~vl~~~ 634 (967)
+.||+|+..
T Consensus 371 ~~GDTL~~~ 379 (526)
T PRK00741 371 QIGDTFTQG 379 (526)
T ss_pred ccCCCccCC
Confidence 889999875
No 97
>KOG0466|consensus
Probab=99.95 E-value=3.7e-28 Score=242.61 Aligned_cols=351 Identities=23% Similarity=0.253 Sum_probs=268.1
Q ss_pred cccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeecee
Q psy3751 318 VFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYR 397 (967)
Q Consensus 318 ~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~ 397 (967)
......++||+.+||+.|||||++.++.+- -+-+++.|-+|.+||..+|.
T Consensus 32 visRQATiNIGTIGHVAHGKSTvVkAiSGv------------------------------~TvrFK~ELERNITIKLGYA 81 (466)
T KOG0466|consen 32 VISRQATINIGTIGHVAHGKSTVVKAISGV------------------------------HTVRFKNELERNITIKLGYA 81 (466)
T ss_pred HhhheeeeeecceeccccCcceeeeeeccc------------------------------eEEEehhhhhcceeEEeccc
Confidence 345567899999999999999999999760 02356788889999998876
Q ss_pred eeec--------------------------------C-----CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCC
Q psy3751 398 YFNT--------------------------------P-----KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKI 440 (967)
Q Consensus 398 ~~~~--------------------------------~-----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~ 440 (967)
+... . -+.+.|+|+|||.-++.+|+.++...|+++|+|.+++.
T Consensus 82 NAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEs 161 (466)
T KOG0466|consen 82 NAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES 161 (466)
T ss_pred cceEEecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCC
Confidence 4211 0 14577999999999999999999999999999999983
Q ss_pred CCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 441 KFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 441 ~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
-.++||.||+.....+..++++++-||+|++.+++ ..+-.++++.|++....++.|++|+||.-+.|++.
T Consensus 162 ------CPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~--A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~-- 231 (466)
T KOG0466|consen 162 ------CPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQ--ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDV-- 231 (466)
T ss_pred ------CCCCchhhHHHHHHHhhhceEEEEechhhhhhHHH--HHHHHHHHHHHHhccccCCCceeeehhhhccChHH--
Confidence 57899999999999999999999999999996543 34556677788877777788999999999999997
Q ss_pred cCCCCCCCCcHHHH-hhcccCCCcCCCCCceeeEEEeecCCCccC--CC--ceEEEEEEEeeeecCCCEEEEecCCc---
Q psy3751 521 NNMLWYNGPTLISL-LESLNTNEKIDKKPLRFPVQLVARHCGHIS--KD--FRGYMGRIESGIIKKNDCLIVEPSGK--- 592 (967)
Q Consensus 521 ~~~~w~~~~~L~~~-l~~~~~~~~~~~~~~~~~i~~v~~~~~~~~--~~--~~v~~G~v~~G~l~~g~~v~i~p~~~--- 592 (967)
+.++ ...+|.|.++-..|.++.+...|.....|. +. +-|..|.+..|.+++||+|.+.|+-.
T Consensus 232 ----------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd 301 (466)
T KOG0466|consen 232 ----------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKD 301 (466)
T ss_pred ----------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeec
Confidence 4454 467899999988899999988888654332 21 24677899999999999999998631
Q ss_pred ---EE-------EEEEEEeCccccceeecCCeEEEEEccccCCCC-----CcccccCCCCccccceeEEEEEEecc----
Q psy3751 593 ---KA-------TIKDIQMLNKSLDMAITGQSVTLIIKEYLDISR-----GNMLVSPFKRPVSLRSINANLCWLSE---- 653 (967)
Q Consensus 593 ---~~-------~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~-----G~vl~~~~~~~~~~~~f~a~i~~~~~---- 653 (967)
.. +|.|+...+.+++.|.||..+++..+-+..+.| |.|+...+..|....+++...++|..
T Consensus 302 ~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgv 381 (466)
T KOG0466|consen 302 ENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGV 381 (466)
T ss_pred CCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhcc
Confidence 12 234455566789999999999998763333444 66777777778888888888877652
Q ss_pred -----------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCccCC
Q psy3751 654 -----------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRST 722 (967)
Q Consensus 654 -----------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~~ 722 (967)
..+.+|...++.+|+...-++|..++. | .+++.|..|+|-+..+... +
T Consensus 382 rt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~------------------d--~~k~~Lt~P~CteigEkiA-l 440 (466)
T KOG0466|consen 382 RTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA------------------D--MAKIQLTSPVCTEIGEKIA-L 440 (466)
T ss_pred ccccccccchhhhcccCcEEEEEecccccCceEEEEec------------------c--eeeeEecCchhcccchhhh-h
Confidence 147788899999999999898887643 2 3667888999988844321 2
Q ss_pred ccceeecccccccceEEEEE
Q psy3751 723 GSFILIDEITFQTVAAVYII 742 (967)
Q Consensus 723 grfil~d~~~~~~~~~~~~v 742 (967)
.|-+ ...++.+|.+.+.
T Consensus 441 SRrv---ekhWRLIGwg~I~ 457 (466)
T KOG0466|consen 441 SRRV---EKHWRLIGWGQIK 457 (466)
T ss_pred hhhh---hhheEEecceeEe
Confidence 2221 1235566666553
No 98
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.95 E-value=6.9e-27 Score=274.85 Aligned_cols=252 Identities=22% Similarity=0.252 Sum_probs=189.0
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++||+|||||||+++|..... ..+..+|+|.++....+.+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~---------------------------------~~~e~~GiTq~i~~~~v~~ 288 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI---------------------------------AQKEAGGITQKIGAYEVEF 288 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC---------------------------------ccccCCccccccceEEEEE
Confidence 4667899999999999999999986211 1123367887776655544
Q ss_pred ----CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 402 ----PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 402 ----~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
.+..++|||||||+.|...+.+++..+|++|||||+.+ |.++||.+++..+...++| +|||+||+|+.
T Consensus 289 ~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~d-------Gv~~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 289 EYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADD-------GVKPQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred EecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcC-------CCChhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 34789999999999999999999999999999999998 8899999999999988987 99999999998
Q ss_pred CcCHHHHHHHHHHHHHH---HHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEE
Q psy3751 478 NYNQIFYKRIVYAYKKF---AEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQ 554 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~---~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 554 (967)
+.+. +.+..++..+ ...++ ..++++++||++|.|++++.+.+ .... .+.......+.|+...+.
T Consensus 361 ~~~~---e~v~~eL~~~~ll~e~~g-~~vpvv~VSAktG~GIdeLle~I--------~~l~-e~~~lk~~~~~~~~g~V~ 427 (742)
T CHL00189 361 NANT---ERIKQQLAKYNLIPEKWG-GDTPMIPISASQGTNIDKLLETI--------LLLA-EIEDLKADPTQLAQGIIL 427 (742)
T ss_pred ccCH---HHHHHHHHHhccchHhhC-CCceEEEEECCCCCCHHHHHHhh--------hhhh-hhhcccCCCCCCceEEEE
Confidence 6442 3333333221 22233 24689999999999999854421 1111 111112223457777777
Q ss_pred EeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEe-CccccceeecCCeEEEEEccccCCCCCccccc
Q psy3751 555 LVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQM-LNKSLDMAITGQSVTLIIKEYLDISRGNMLVS 633 (967)
Q Consensus 555 ~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~-~~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~ 633 (967)
++....+.| ++++|+|.+|+|++||.|.+++. ..+|+++.. .+.++.+|.||+.|.+.... .....||.+..
T Consensus 428 e~~iD~~~G----~V~~~~V~sGtLr~GD~vv~g~~--~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~-~~~~~Gd~l~v 500 (742)
T CHL00189 428 EAHLDKTKG----PVATILVQNGTLHIGDIIVIGTS--YAKIRGMINSLGNKINLATPSSVVEIWGLS-SVPATGEHFQV 500 (742)
T ss_pred EEEEcCCCc----eEEEEEEEcCEEecCCEEEECCc--ceEEEEEEcCCCcCccEEcCCCceEecCcc-cCCCCCCEEEE
Confidence 777667776 89999999999999999999884 489999984 45689999999999886432 24567887765
Q ss_pred C
Q psy3751 634 P 634 (967)
Q Consensus 634 ~ 634 (967)
.
T Consensus 501 ~ 501 (742)
T CHL00189 501 F 501 (742)
T ss_pred e
Confidence 3
No 99
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.95 E-value=5.1e-26 Score=262.64 Aligned_cols=273 Identities=19% Similarity=0.174 Sum_probs=203.1
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCC-CceeeeeccCCchhhhccceeEeeceeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSG-HNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
....+||+|+||+|||||||+++|+...|.+... |... ....-...+|+.+.|+++|+|+..+...+
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~------------g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~ 75 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTA------------GAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF 75 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCcccc------------ceeccccccccccCCCCHHHHhcCCcEEEEEEEE
Confidence 3567899999999999999999999877765321 1100 00011245899999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++.+.+++++|||||.+|...+..+++.+|++|+|||+.+ ++..++...+..+...++| +|+++||+|+...
T Consensus 76 ~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~-------gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~ 147 (527)
T TIGR00503 76 PYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAK-------GVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIR 147 (527)
T ss_pred eeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCC-------CCCHHHHHHHHHHHhcCCC-EEEEEECccccCC
Confidence 9999999999999999999999999999999999999998 8888999999888888877 8899999998654
Q ss_pred CHHHHHHHHHHHHHHHHHc-------------------------------------------------------------
Q psy3751 480 NQIFYKRIVYAYKKFAEDI------------------------------------------------------------- 498 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~------------------------------------------------------------- 498 (967)
+.. ++.++++..+...
T Consensus 148 ~~~---~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 224 (527)
T TIGR00503 148 DPL---ELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQ 224 (527)
T ss_pred CHH---HHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHH
Confidence 321 1222222221100
Q ss_pred ---------------------CCccceEEeccccCCCcccccccCCCCCCCCcHHHHh-hcccCCCcC---------CCC
Q psy3751 499 ---------------------HFQNINTIPISALNGDNIISASNNMLWYNGPTLISLL-ESLNTNEKI---------DKK 547 (967)
Q Consensus 499 ---------------------~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l-~~~~~~~~~---------~~~ 547 (967)
.-+-.|+++.||.++.|+.. |++.+ +.+|.|... .+.
T Consensus 225 ~~~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~------------LLd~i~~~~PsP~~~~~~~~~~~~~~~ 292 (527)
T TIGR00503 225 LRDELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDH------------FLDGLLQWAPKPEARQSDTRTVEPTEE 292 (527)
T ss_pred HHHHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHH------------HHHHHHHHCCCCccccCCceecCCCCC
Confidence 00124667778888888776 44444 445555321 235
Q ss_pred CceeeEEEeec--C-CCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeecCCeEEEEEc
Q psy3751 548 PLRFPVQLVAR--H-CGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIK 620 (967)
Q Consensus 548 ~~~~~i~~v~~--~-~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~ 620 (967)
+|...|.++.. . ...| ++...||.||+++.|++|.....+++.++..+..+. .++++|.|||++++.-.
T Consensus 293 ~~~~~VFK~~~~mdp~~~g----riaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~ 368 (527)
T TIGR00503 293 KFSGFVFKIQANMDPKHRD----RVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNH 368 (527)
T ss_pred CeeEEEEEEEeccCcccCc----eEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECC
Confidence 66666666654 2 3445 889999999999999999998888888998877543 36899999999988743
Q ss_pred cccCCCCCcccccC
Q psy3751 621 EYLDISRGNMLVSP 634 (967)
Q Consensus 621 ~~~~i~~G~vl~~~ 634 (967)
.+++.||+|++.
T Consensus 369 --~~~~~GDtl~~~ 380 (527)
T TIGR00503 369 --GTIQIGDTFTQG 380 (527)
T ss_pred --CCcccCCEecCC
Confidence 457889999874
No 100
>KOG0189|consensus
Probab=99.95 E-value=8.4e-28 Score=225.62 Aligned_cols=190 Identities=23% Similarity=0.379 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHcCCCcE-EEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhC-CcEEEEec
Q psy3751 25 EAIHIMREVSAECNNPV-LLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLG-ETLIVRSV 102 (967)
Q Consensus 25 ~a~~~i~~~~~~~~~i~-va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~g-i~i~~~~~ 102 (967)
.+.+++.|++..+++.. .+|| |...+|+.+++++. +.+++++|+||+.+||||+++.+++.++|| ++++++.+
T Consensus 33 sP~eIm~~al~tf~~~~q~a~~-G~~~lvlid~~~~~----~~~~~l~~idT~~~~PeT~~l~d~VekkY~~i~I~~~~p 107 (261)
T KOG0189|consen 33 SPQEIMDWALETFPNLFQTAAS-GLEGLVLIDMLSKT----GRPFRLFFIDTLHHFPETLRLFDAVEKKYGNIRIHVYFP 107 (261)
T ss_pred CHHHHHHHHHHHhhhHHHHHhc-cccchHHHHHHHHc----CCCceeEEeeccccChHHHHHHHHHHHhcCceEEEEEcc
Confidence 58899999999997755 8888 67789999999998 557999999999999999999999999999 99999988
Q ss_pred chhhhh------cccccCCCCcccchhhcHHHHHHHHHH-cCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCc
Q psy3751 103 EDSIMK------GTVRLRKPNTDSRNAAQSITLLETIKE-FKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 103 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p 175 (967)
+....+ +...++......||+++++.+.+.+.+ .+..+|+||.|++++.+|+..++++.|..++
T Consensus 108 d~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~gtRselpiVqvD~~fe--------- 178 (261)
T KOG0189|consen 108 DAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQGGTRSELPIVQVDPVFE--------- 178 (261)
T ss_pred hhHHHHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCCCcccccceEEecCccc---------
Confidence 753222 222344556778888877766655554 6668999999999999999999999887654
Q ss_pred cccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEEE
Q psy3751 176 ELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVRF 255 (967)
Q Consensus 176 ~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~ 255 (967)
.+++||+++|+-.|||.||..+++|||.|+ ..+|
T Consensus 179 --------------llK~NPlaN~~~~dV~nyi~t~nVP~NeL~--------------------------------~~GY 212 (261)
T KOG0189|consen 179 --------------LLKINPLANWEFNDVWNYIRTNNVPYNELL--------------------------------AAGY 212 (261)
T ss_pred --------------eeeecccccccHHHHHHHHHhcCCcHHHHH--------------------------------hcCC
Confidence 389999999999999999999999999999 7899
Q ss_pred eccccccccccccCCcCCh
Q psy3751 256 RTVGDILCTCPILSNATTV 274 (967)
Q Consensus 256 ~~~gc~~~~~~v~s~~~tl 274 (967)
++.|||+||.|+.+|.+.-
T Consensus 213 ~SIG~~~~TqpV~~Ge~ER 231 (261)
T KOG0189|consen 213 RSIGDEHSTQPVLEGEDER 231 (261)
T ss_pred eeccCccccCcCCCCcccc
Confidence 9999999999999997654
No 101
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.94 E-value=4.1e-26 Score=266.76 Aligned_cols=228 Identities=21% Similarity=0.281 Sum_probs=166.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec-
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT- 401 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~- 401 (967)
....|+++||+|||||||+++|.+.... .....|+|.+.+...+.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~---------------------------------~~~~g~itq~ig~~~~~~~ 51 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVA---------------------------------AKEAGGITQHIGATEVPID 51 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc---------------------------------cCCCCceEEeeceeecccc
Confidence 3456999999999999999999762110 001122333322221111
Q ss_pred -----------------CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCC
Q psy3751 402 -----------------PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI 464 (967)
Q Consensus 402 -----------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~ 464 (967)
.-..++|||||||++|...+.++++.+|++++|+|+++ |+.+|+.+++.++...++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~-------g~~~qt~e~i~~~~~~~v 124 (586)
T PRK04004 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINE-------GFQPQTIEAINILKRRKT 124 (586)
T ss_pred ccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCC-------CCCHhHHHHHHHHHHcCC
Confidence 11137999999999999999999999999999999999 889999999999988888
Q ss_pred CeEEEEEecCCcc-CcC------------------HHHHHHHHHHHHHHHHHcCC------------ccceEEeccccCC
Q psy3751 465 KHIIIAVNKMDLI-NYN------------------QIFYKRIVYAYKKFAEDIHF------------QNINTIPISALNG 513 (967)
Q Consensus 465 ~~iivviNK~D~~-~~~------------------~~~~~~i~~~~~~~~~~~~~------------~~~~ii~iSa~~g 513 (967)
| +++|+||+|+. .|. +..|++...++...+...|+ .+++++|+||++|
T Consensus 125 p-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG 203 (586)
T PRK04004 125 P-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG 203 (586)
T ss_pred C-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC
Confidence 8 89999999985 332 23344444445555555553 2578999999999
Q ss_pred CcccccccCCCCCCCCcHHHHhhc-ccCC-CcCCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC
Q psy3751 514 DNIISASNNMLWYNGPTLISLLES-LNTN-EKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG 591 (967)
Q Consensus 514 ~gi~~l~~~~~w~~~~~L~~~l~~-~~~~-~~~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~ 591 (967)
+|++++.+.+ ...++. ++.+ ....+.|++++|.+++...+.| ++++|+|.+|+|++||.|.++|.+
T Consensus 204 eGi~dLl~~i--------~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G----~v~~~~v~~GtL~~Gd~vv~~~~~ 271 (586)
T PRK04004 204 EGIPDLLMVL--------AGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLG----TTIDVILYDGTLRKGDTIVVGGKD 271 (586)
T ss_pred CChHHHHHHH--------HHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCc----eEEEEEEEcCEEECCCEEEECcCC
Confidence 9999864421 111211 2111 2234579999999999988887 899999999999999999999987
Q ss_pred c--EEEEEEEEeCc
Q psy3751 592 K--KATIKDIQMLN 603 (967)
Q Consensus 592 ~--~~~V~~i~~~~ 603 (967)
. .++|++|..++
T Consensus 272 ~~i~~kVr~l~~~~ 285 (586)
T PRK04004 272 GPIVTKVRALLKPR 285 (586)
T ss_pred CcceEEEEEEecCc
Confidence 3 57999999873
No 102
>KOG1145|consensus
Probab=99.94 E-value=7.2e-26 Score=243.98 Aligned_cols=251 Identities=24% Similarity=0.275 Sum_probs=192.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
..+.-|-|+||+|||||||+.+|-+..- ...-..|||..++...+..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~V---------------------------------AA~E~GGITQhIGAF~V~~ 197 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSV---------------------------------AAGEAGGITQHIGAFTVTL 197 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCce---------------------------------ehhhcCCccceeceEEEec
Confidence 3556789999999999999999975111 0111258999988776665
Q ss_pred -CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 402 -PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 402 -~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
++.+++|+|||||..|.....+|+..+|+++|||.|.+ |+++||.|.+..++..++| +||++||+|..+.+
T Consensus 198 p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD-------GVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 198 PSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD-------GVMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN 269 (683)
T ss_pred CCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC-------CccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC
Confidence 46789999999999999999999999999999999999 9999999999999999998 99999999999877
Q ss_pred HHHHHHHHHHHHH---HHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEee
Q psy3751 481 QIFYKRIVYAYKK---FAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557 (967)
Q Consensus 481 ~~~~~~i~~~~~~---~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~ 557 (967)
.++ +++++.. ..+.+|- +++++|+||++|+|++.|.+.+. |+..+..+.. ....|+.-.|-+..
T Consensus 270 pek---v~~eL~~~gi~~E~~GG-dVQvipiSAl~g~nl~~L~eail------l~Ae~mdLkA---~p~g~~eg~VIES~ 336 (683)
T KOG1145|consen 270 PEK---VKRELLSQGIVVEDLGG-DVQVIPISALTGENLDLLEEAIL------LLAEVMDLKA---DPKGPAEGWVIESS 336 (683)
T ss_pred HHH---HHHHHHHcCccHHHcCC-ceeEEEeecccCCChHHHHHHHH------HHHHHhhccc---CCCCCceEEEEEee
Confidence 643 3333322 2344553 78999999999999998654321 2222222222 23467777777777
Q ss_pred cCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCcc-ccceeecCCeEEEEEccccCCCCCccccc
Q psy3751 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNK-SLDMAITGQSVTLIIKEYLDISRGNMLVS 633 (967)
Q Consensus 558 ~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~-~v~~a~~G~~v~l~l~~~~~i~~G~vl~~ 633 (967)
-..+.| .+.+--|..|+|+.|+.+..+-. .++|+.+..+++ ++++|.|++.|.+..-... ...||.+..
T Consensus 337 vdkg~G----~~aT~iVkrGTLkKG~vlV~G~~--w~KVr~l~D~nGk~i~~A~Ps~pv~V~Gwkdl-P~aGD~vle 406 (683)
T KOG1145|consen 337 VDKGRG----PVATVIVKRGTLKKGSVLVAGKS--WCKVRALFDHNGKPIDEATPSQPVEVLGWKDL-PIAGDEVLE 406 (683)
T ss_pred ecCCcc----ceeEEEEeccccccccEEEEech--hhhhhhhhhcCCCCccccCCCCceEeecccCC-CCCCceEEE
Confidence 777777 67888899999999999988654 489999997765 7999999999998764322 345776554
No 103
>PRK06850 hypothetical protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=257.98 Aligned_cols=230 Identities=21% Similarity=0.237 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHcCCC-cEEEEecChhHHHHHHHHHHhcCCC-----CCCeeEEEeeCCCCChhhHHHHHHH----
Q psy3751 20 DWLESEAIHIMREVSAECNN-PVLLFSGGKDSVVLLRLAEKAFRPS-----RFPFPMVHIDTGHNFPEVISFRDNC---- 89 (967)
Q Consensus 20 ~~~~~~a~~~i~~~~~~~~~-i~va~SGGKDS~vlL~l~~~~~~~~-----~~~i~~v~idtg~~~pet~~~~~~~---- 89 (967)
...++.+++.|++.+...++ .+|+|||||||+|+|+|+.+++... ..++.++|.|||+|+|++++|+++.
T Consensus 16 ~~~~~~~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i 95 (507)
T PRK06850 16 GEPIEELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERI 95 (507)
T ss_pred hHHHHHHHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHH
Confidence 56777888888887776655 4599999999999999999986432 2368999999999999999887755
Q ss_pred ---HHHhCCcEEEEe--c--chhhhhcccccCCC--Ccccchh---hcHHHHHHHHHH----cCCcEEEEeccchhhHhh
Q psy3751 90 ---ISKLGETLIVRS--V--EDSIMKGTVRLRKP--NTDSRNA---AQSITLLETIKE----FKFDACIGGARRDEEKAR 153 (967)
Q Consensus 90 ---~~~~gi~i~~~~--~--~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~----~~~~~~~~G~R~des~~R 153 (967)
++++|+|+.++. | ..+||..+...+.| ....+|| +|..|+.+++++ ++..++++|+|++||..|
T Consensus 96 ~~~a~~~glpi~~~~v~P~~~~sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~~R 175 (507)
T PRK06850 96 NEAAKKQGLPITPHKLTPKINDTFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESAAR 175 (507)
T ss_pred HHHHHHcCCceEEEeeCCCcchhHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccHHH
Confidence 567799987654 3 34677766655543 3344444 677777666653 567789999999999999
Q ss_pred hcc-ccccccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCC-------CCccccccch
Q psy3751 154 AKE-RIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIIL-------PSLYFAHKRK 225 (967)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~-------~~lY~~~~~~ 225 (967)
+.. ...+.+. ..+ + ......+.+.++||.+|+..|||.|+..+++|+ ..||..+.
T Consensus 176 A~~m~~~~~~~--~rl---------~----~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~~~~~L~~lY~~a~-- 238 (507)
T PRK06850 176 AQVMAKHEIEG--SRL---------S----RHTTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGGSNRDLFTLYRGAS-- 238 (507)
T ss_pred HhhhhhhcccC--cce---------e----eccCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcc--
Confidence 885 3333221 110 0 011123457899999999999999999998886 34552111
Q ss_pred hhhcCCEeecccCCCCCCCCccceeeeEEEeccccccccccccCCcCChHHHHHh
Q psy3751 226 IIKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKE 280 (967)
Q Consensus 226 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e 280 (967)
...+|.+ .++.. ...|..+| +|||.||.. +.+.+++.+++.
T Consensus 239 -~~~eCp~-v~d~~-------~~sCG~sR---fGCwvCt~v--~~DKSme~mi~~ 279 (507)
T PRK06850 239 -ADGECPL-VVDTS-------TPSCGNSR---FGCWVCTVV--TKDKSMEAMIQN 279 (507)
T ss_pred -CCCCCCe-eeCCC-------CCCCCCCC---CCccccccc--cchhhHHHHHhc
Confidence 1123432 22222 12222345 599999955 567778777764
No 104
>PRK13351 elongation factor G; Reviewed
Probab=99.94 E-value=1.5e-25 Score=271.76 Aligned_cols=271 Identities=23% Similarity=0.228 Sum_probs=208.7
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....+||+++||+|||||||+++|+...|.+... +. .-.-.+.+|..+.|+++|+|+......+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~------------~~---v~~~~~~~d~~~~e~~r~~ti~~~~~~~~ 69 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKM------------GE---VEDGTTVTDWMPQEQERGITIESAATSCD 69 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCcccc------------cc---ccCCcccCCCCHHHHhcCCCcccceEEEE
Confidence 3467899999999999999999999877665321 00 00113468999999999999999999999
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
+.+..+++||||||.+|...+..+++.+|++++|+|+++ +...++.+++..+...++| +++|+||+|+...+
T Consensus 70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~-------~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~ 141 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVT-------GVQPQTETVWRQADRYGIP-RLIFINKMDRVGAD 141 (687)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCC-------CCCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999998 8888899999888888887 77899999988643
Q ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Q psy3751 481 QIFYKRIVYAYKKFAED--------------------------------------------------------------- 497 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~--------------------------------------------------------------- 497 (967)
- ....++++..+..
T Consensus 142 ~---~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (687)
T PRK13351 142 L---FKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALA 218 (687)
T ss_pred H---HHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 2222222211110
Q ss_pred -------------cCC----------------ccceEEeccccCCCcccccccCCCCCCCCcHHHH-hhcccCCCc----
Q psy3751 498 -------------IHF----------------QNINTIPISALNGDNIISASNNMLWYNGPTLISL-LESLNTNEK---- 543 (967)
Q Consensus 498 -------------~~~----------------~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~-l~~~~~~~~---- 543 (967)
..+ .-+|++..||++|.|+.. |++. +..+|.|..
T Consensus 219 ~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~------------LLd~I~~~lPsP~~~~~~ 286 (687)
T PRK13351 219 EFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEP------------LLDAVVDYLPSPLEVPPP 286 (687)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHH------------HHHHHHHHCCChhhcccc
Confidence 000 124677789999999987 4443 344555532
Q ss_pred --------------CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cc
Q psy3751 544 --------------IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KS 605 (967)
Q Consensus 544 --------------~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~ 605 (967)
..+.|+.+.|.++...++.| ++..+||.+|+|+.||.|++.+.+...+|..|...+ .+
T Consensus 287 ~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G----~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~ 362 (687)
T PRK13351 287 RGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAG----KLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREE 362 (687)
T ss_pred cccCCCCCceeecCCCCCCeEEEEEEeeecCCCc----eEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeE
Confidence 23568888888888877666 789999999999999999999888778888876553 47
Q ss_pred cceeecCCeEEEEEccccCCCCCcccccCC
Q psy3751 606 LDMAITGQSVTLIIKEYLDISRGNMLVSPF 635 (967)
Q Consensus 606 v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~ 635 (967)
++++.|||++++..- .++..|++|++..
T Consensus 363 v~~~~aGdI~~i~gl--~~~~~gdtl~~~~ 390 (687)
T PRK13351 363 VDRAKAGDIVAVAGL--KELETGDTLHDSA 390 (687)
T ss_pred CCccCCCCEEEEECc--ccCccCCEEeCCC
Confidence 899999999988643 3456799998753
No 105
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.94 E-value=1.2e-25 Score=261.26 Aligned_cols=226 Identities=23% Similarity=0.319 Sum_probs=161.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
..|+++||+|||||||+++|++..- ..+...|+|.+++...+.++
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v---------------------------------~~~e~ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAV---------------------------------AKREAGGITQHIGATEIPMDVI 51 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc---------------------------------ccccCCceecccCeeEeeeccc
Confidence 4599999999999999999987211 00111234443333322211
Q ss_pred ----------------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCe
Q psy3751 403 ----------------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKH 466 (967)
Q Consensus 403 ----------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~ 466 (967)
...++|||||||+.|...+..+++.+|+++||+|+++ |..+|+.+++..+...++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~-------g~~~qt~e~i~~l~~~~vp- 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINE-------GFKPQTQEALNILRMYKTP- 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCc-------CCCHhHHHHHHHHHHcCCC-
Confidence 1248999999999999999999999999999999998 8889999999988888887
Q ss_pred EEEEEecCCccC-cCHH------------------HHHHHHHHHHHHHHHcCC------------ccceEEeccccCCCc
Q psy3751 467 IIIAVNKMDLIN-YNQI------------------FYKRIVYAYKKFAEDIHF------------QNINTIPISALNGDN 515 (967)
Q Consensus 467 iivviNK~D~~~-~~~~------------------~~~~i~~~~~~~~~~~~~------------~~~~ii~iSa~~g~g 515 (967)
+|+|+||+|+.+ |... .+++....+...+.+.|+ .+++++|+||++|+|
T Consensus 124 iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeG 203 (590)
T TIGR00491 124 FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEG 203 (590)
T ss_pred EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCC
Confidence 899999999973 2110 011111111112233332 257999999999999
Q ss_pred ccccccCCCCCCCCcHHHHhhc-ccC-CCcCCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCc-
Q psy3751 516 IISASNNMLWYNGPTLISLLES-LNT-NEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGK- 592 (967)
Q Consensus 516 i~~l~~~~~w~~~~~L~~~l~~-~~~-~~~~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~- 592 (967)
+++|.+. |....+. ++. -....+.|++++|.+++...|.| ++++|.|.+|+|++||.|.++|.+.
T Consensus 204 ideLl~~--------l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G----~v~t~~v~~G~l~~GD~iv~~~~~~~ 271 (590)
T TIGR00491 204 IPELLTM--------LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLG----MTIDAVIYDGILRKGDTIAMAGSDDV 271 (590)
T ss_pred hhHHHHH--------HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCc----eEEEEEEEcCEEeCCCEEEEccCCCc
Confidence 9986442 1111111 111 12234679999999999999888 8999999999999999999999873
Q ss_pred -EEEEEEEEeCc
Q psy3751 593 -KATIKDIQMLN 603 (967)
Q Consensus 593 -~~~V~~i~~~~ 603 (967)
.++|++|...+
T Consensus 272 i~~kVr~l~~~~ 283 (590)
T TIGR00491 272 IVTRVRALLKPR 283 (590)
T ss_pred ccEEEEEecCCC
Confidence 68999999765
No 106
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.94 E-value=1.2e-25 Score=271.66 Aligned_cols=285 Identities=20% Similarity=0.199 Sum_probs=205.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee-
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY- 398 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~- 398 (967)
..+..+||+++||+|||||||+++|+..+|.+.... .| -.+.+|..++|+++|+|++.+...
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~-------~~~~~d~~~~e~~rg~Ti~~~~~~~ 77 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AG-------QQLYLDFDEQEQERGITINAANVSM 77 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CC-------ceeecCCCHHHHhhcchhhccccee
Confidence 344678999999999999999999999888774321 11 134589999999999999877654
Q ss_pred ---eecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 399 ---FNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 399 ---~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
+++.+.+++++|||||.+|...+..+++.+|++|+|+|+.+ |+..++.+++..+...+++ .|+|+||||
T Consensus 78 ~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~-------g~~~~t~~~~~~~~~~~~p-~ivviNKiD 149 (720)
T TIGR00490 78 VHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVE-------GVMPQTETVLRQALKENVK-PVLFINKVD 149 (720)
T ss_pred EEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCC-------CCCccHHHHHHHHHHcCCC-EEEEEEChh
Confidence 56678899999999999999999999999999999999999 8899999999888888888 578999999
Q ss_pred ccCcC--------HHHHHHHHHHHHHHHHHcCCc-----------cceEEeccccCCCccc------------cccc---
Q psy3751 476 LINYN--------QIFYKRIVYAYKKFAEDIHFQ-----------NINTIPISALNGDNII------------SASN--- 521 (967)
Q Consensus 476 ~~~~~--------~~~~~~i~~~~~~~~~~~~~~-----------~~~ii~iSa~~g~gi~------------~l~~--- 521 (967)
....+ +.++..+...+..++.....+ +.+....|++.+++.. ++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~ 229 (720)
T TIGR00490 150 RLINELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCK 229 (720)
T ss_pred cccchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHH
Confidence 86421 334444444455554332100 1122334555542221 0000
Q ss_pred -CC-----CCCCC-CcHHHHhhc-ccCCCc-------------------------CCCCCceeeEEEeecCCCccCCCce
Q psy3751 522 -NM-----LWYNG-PTLISLLES-LNTNEK-------------------------IDKKPLRFPVQLVARHCGHISKDFR 568 (967)
Q Consensus 522 -~~-----~w~~~-~~L~~~l~~-~~~~~~-------------------------~~~~~~~~~i~~v~~~~~~~~~~~~ 568 (967)
.. .|.+- ..|++.+.. +|.|.. +.+.|+...|.++....+.| +
T Consensus 230 ~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G----~ 305 (720)
T TIGR00490 230 EDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAG----E 305 (720)
T ss_pred hccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCc----E
Confidence 00 12110 123433332 455421 12457888888887766666 8
Q ss_pred EEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeecCCeEEEEEccccCCCCCcccccCC
Q psy3751 569 GYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIKEYLDISRGNMLVSPF 635 (967)
Q Consensus 569 v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~ 635 (967)
+.+|||.+|+|++||.|++.+.+.+.+|+.|..+. .++++|.||++|++... .++.+||+|++++
T Consensus 306 ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl--~~~~~GdtL~~~~ 374 (720)
T TIGR00490 306 VAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGL--KDAVAGETICTTV 374 (720)
T ss_pred EEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECc--cccccCceeecCC
Confidence 99999999999999999999999999999998764 47999999999999753 3567899998754
No 107
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=99.94 E-value=3.8e-26 Score=253.13 Aligned_cols=226 Identities=18% Similarity=0.163 Sum_probs=147.3
Q ss_pred HHHHHHHHcCCCc-EEEEecChhHHHHHHHHHHhcCCC-----CCCeeEEEeeCCCCChhhHHHHHH-------HHHHhC
Q psy3751 28 HIMREVSAECNNP-VLLFSGGKDSVVLLRLAEKAFRPS-----RFPFPMVHIDTGHNFPEVISFRDN-------CISKLG 94 (967)
Q Consensus 28 ~~i~~~~~~~~~i-~va~SGGKDS~vlL~l~~~~~~~~-----~~~i~~v~idtg~~~pet~~~~~~-------~~~~~g 94 (967)
+.|++.+...+++ +|+|||||||+|+|+|+.+++... .+.++++|.|||+|||++++|+++ .++++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666666665 699999999999999999986431 246899999999999999988865 456778
Q ss_pred CcEEEEe--c--chhhhhcccccCCC--Ccccch---hhcHHHHHHHHHH----cCCcEEEEeccchhhHhhhcc-cccc
Q psy3751 95 ETLIVRS--V--EDSIMKGTVRLRKP--NTDSRN---AAQSITLLETIKE----FKFDACIGGARRDEEKARAKE-RIFS 160 (967)
Q Consensus 95 i~i~~~~--~--~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~----~~~~~~~~G~R~des~~R~~~-~~~~ 160 (967)
+|+.++. | ...||..+...+.| ....+| .+|..++.+++++ ++..++++|+|++||..|+.. ...+
T Consensus 83 lpi~~~~v~P~~~~~Fwv~liGrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~~RA~~m~k~e 162 (447)
T TIGR03183 83 LPIEPHRLTPEIKDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQARAAVMEKHE 162 (447)
T ss_pred CCeEEEecCCCcchHHHHHHhcCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHHHHHhhhhhhc
Confidence 8887654 3 23666665555543 222333 4677776666654 577899999999999999985 1111
Q ss_pred ccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhh----cCCEeecc
Q psy3751 161 FRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIK----RKGLLIPF 236 (967)
Q Consensus 161 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~----~~~~l~~v 236 (967)
....... ++ ......+.+.++||.+|+.+|||.|+..+++|+..-..+.-.-+.. .+|.+ ++
T Consensus 163 ~~~~r~~---------l~----~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~-v~ 228 (447)
T TIGR03183 163 SGSLRDR---------LS----RNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPL-VV 228 (447)
T ss_pred ccccccc---------cc----ccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCce-ee
Confidence 1110000 00 0111234688999999999999999999999865333211111112 23332 22
Q ss_pred cCCCCCCCCccceeeeEEEeccccccccccccCCcCChHHHHH
Q psy3751 237 TNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIK 279 (967)
Q Consensus 237 ~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~ 279 (967)
+.. .| .|+..|+|||.||.. +.+.+++.++.
T Consensus 229 d~~---~~-------sCG~sRfGCw~Ct~v--~~Dksl~~mi~ 259 (447)
T TIGR03183 229 DTS---TP-------SCGDSRFGCWVCTMV--SEDKSMNAMIQ 259 (447)
T ss_pred CCC---CC-------CCCCCCCCeeeCcCc--cchHHHHHHhc
Confidence 221 22 234444699999965 46777888875
No 108
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3e-25 Score=243.64 Aligned_cols=238 Identities=22% Similarity=0.260 Sum_probs=183.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP- 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 402 (967)
.+-|.++||+|||||||+..+-+.. ....-..|||..++.+.+.++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~---------------------------------Va~~EaGGITQhIGA~~v~~~~ 51 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTN---------------------------------VAAGEAGGITQHIGAYQVPLDV 51 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCc---------------------------------cccccCCceeeEeeeEEEEecc
Confidence 4568999999999999999986511 111223589999999999885
Q ss_pred --CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 403 --KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
...++|+|||||+.|.....+|++.+|+++||||+++ |+++||.|-+..++..++| +||++||||..+.+
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dD-------Gv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n 123 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADD-------GVMPQTIEAINHAKAAGVP-IVVAINKIDKPEAN 123 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccC-------CcchhHHHHHHHHHHCCCC-EEEEEecccCCCCC
Confidence 4689999999999999999999999999999999999 9999999999999999999 99999999999766
Q ss_pred HHHHHHHHHHHHHH---HHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEee
Q psy3751 481 QIFYKRIVYAYKKF---AEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557 (967)
Q Consensus 481 ~~~~~~i~~~~~~~---~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~ 557 (967)
.++ +..++++. .+.++ .++.++|+||++|+|+++|.+.+ -.+.....-....+.+.+-.+-++.
T Consensus 124 p~~---v~~el~~~gl~~E~~g-g~v~~VpvSA~tg~Gi~eLL~~i---------ll~aev~elka~~~~~a~gtviE~~ 190 (509)
T COG0532 124 PDK---VKQELQEYGLVPEEWG-GDVIFVPVSAKTGEGIDELLELI---------LLLAEVLELKANPEGPARGTVIEVK 190 (509)
T ss_pred HHH---HHHHHHHcCCCHhhcC-CceEEEEeeccCCCCHHHHHHHH---------HHHHHHHhhhcCCCCcceEEEEEEE
Confidence 543 33333222 22222 25899999999999999953311 1111111222234567777888888
Q ss_pred cCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEe-CccccceeecCCeEEEEEcc
Q psy3751 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQM-LNKSLDMAITGQSVTLIIKE 621 (967)
Q Consensus 558 ~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~-~~~~v~~a~~G~~v~l~l~~ 621 (967)
-..|.| .+.+--|.+|+|++||.|.++... .+|+.+.. ...+++.+.++..+.+...+
T Consensus 191 ~dkG~G----~vatviv~~GtL~~GD~iv~g~~~--g~I~t~v~~~~~~i~~a~ps~~v~i~g~~ 249 (509)
T COG0532 191 LDKGLG----PVATVIVQDGTLKKGDIIVAGGEY--GRVRTMVDDLGKPIKEAGPSKPVEILGLS 249 (509)
T ss_pred eccCCC----ceEEEEEecCeEecCCEEEEccCC--CceEEeehhcCCCccccCCCCCeEEeccc
Confidence 888877 678888999999999999997765 67777654 45689999999888776554
No 109
>PRK12740 elongation factor G; Reviewed
Probab=99.93 E-value=4.7e-25 Score=267.13 Aligned_cols=262 Identities=24% Similarity=0.227 Sum_probs=202.8
Q ss_pred EecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceEEEe
Q psy3751 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIA 409 (967)
Q Consensus 330 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~li 409 (967)
+||+|||||||+++|++..|.+... |. .-.-.+++|+...|+++|+|++.....+.+.+..+++|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~------------~~---~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~li 65 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRI------------GE---VEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLI 65 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccC------------cc---ccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEE
Confidence 6999999999999999988776321 10 00123678999999999999999999999999999999
Q ss_pred eChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHH
Q psy3751 410 DTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVY 489 (967)
Q Consensus 410 DtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 489 (967)
|||||.+|...+..++..+|++++|+|+++ +...++..++..+...+++ +++|+||+|+...+. .++.+
T Consensus 66 DtPG~~~~~~~~~~~l~~aD~vllvvd~~~-------~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~---~~~~~ 134 (668)
T PRK12740 66 DTPGHVDFTGEVERALRVLDGAVVVVCAVG-------GVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGADF---FRVLA 134 (668)
T ss_pred ECCCcHHHHHHHHHHHHHhCeEEEEEeCCC-------CcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCH---HHHHH
Confidence 999999999999999999999999999998 7788888888888888887 778999999875432 12222
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q psy3751 490 AYKKFAED------------------------------------------------------------------------ 497 (967)
Q Consensus 490 ~~~~~~~~------------------------------------------------------------------------ 497 (967)
++++.+..
T Consensus 135 ~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~ 214 (668)
T PRK12740 135 QLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLE 214 (668)
T ss_pred HHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHC
Confidence 22221100
Q ss_pred -cCC----------------ccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCc-----------------
Q psy3751 498 -IHF----------------QNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEK----------------- 543 (967)
Q Consensus 498 -~~~----------------~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~----------------- 543 (967)
..+ .-+|++..||++|.|+..+ |..++..+|.|..
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-----------Ld~i~~~lPsp~~~~~~~~~~~~~~~~~~~ 283 (668)
T PRK12740 215 GEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRL-----------LDAVVDYLPSPLEVPPVDGEDGEEGAELAP 283 (668)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHH-----------HHHHHHHCCChhhcccccCCCCcccccccc
Confidence 000 1246788999999999984 3333344565531
Q ss_pred CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeC----ccccceeecCCeEEEEE
Q psy3751 544 IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQML----NKSLDMAITGQSVTLII 619 (967)
Q Consensus 544 ~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~l~l 619 (967)
..+.|+.+.|.++++.+..| +++.+||.+|+|++||.|++.+.+++.+|..|... ..++++|.|||++++..
T Consensus 284 ~~~~~l~a~v~k~~~~~~~G----~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~g 359 (668)
T PRK12740 284 DPDGPLVALVFKTMDDPFVG----KLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAK 359 (668)
T ss_pred CCCCCeEEEEEEeeecCCCC----cEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEec
Confidence 23567888888888877666 78999999999999999999988777777777643 35799999999999984
Q ss_pred ccccCCCCCcccccC
Q psy3751 620 KEYLDISRGNMLVSP 634 (967)
Q Consensus 620 ~~~~~i~~G~vl~~~ 634 (967)
. ..+.+||+|++.
T Consensus 360 l--~~~~~Gdtl~~~ 372 (668)
T PRK12740 360 L--KDAATGDTLCDK 372 (668)
T ss_pred c--CccCCCCEEeCC
Confidence 3 358899999864
No 110
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8.6e-26 Score=237.85 Aligned_cols=275 Identities=19% Similarity=0.212 Sum_probs=200.7
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++++||-|||+|||||...|+---|.|.. .....++.+.. ...+||...|++|||++..+...|++.
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~--------AG~Vk~rk~~~---~a~SDWM~iEkqRGISVtsSVMqF~Y~ 79 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQE--------AGTVKGRKSGK---HAKSDWMEIEKQRGISVTSSVMQFDYA 79 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhh--------cceeeeccCCc---ccccHHHHHHHhcCceEEeeEEEeccC
Confidence 4467999999999999999999976665521 11111111111 234799999999999999999999999
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH-
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ- 481 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~- 481 (967)
+..++|+|||||+||...+.+.+..+|.+|.||||.. |+.+||+..+..++..++| |+-++||||....+.
T Consensus 80 ~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAK-------GiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ 151 (528)
T COG4108 80 DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-------GIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPL 151 (528)
T ss_pred CeEEeccCCCCccccchhHHHHHHhhheeeEEEeccc-------CccHHHHHHHHHHhhcCCc-eEEEeeccccccCChH
Confidence 9999999999999999999999999999999999999 9999999999999999998 999999999865331
Q ss_pred HHH---------------------------------------------------------------------HHHHHHHH
Q psy3751 482 IFY---------------------------------------------------------------------KRIVYAYK 492 (967)
Q Consensus 482 ~~~---------------------------------------------------------------------~~i~~~~~ 492 (967)
+.+ ++..++++
T Consensus 152 ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~E 231 (528)
T COG4108 152 ELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELE 231 (528)
T ss_pred HHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHH
Confidence 111 11222221
Q ss_pred HHHHH---c------CCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcc-cCCCcC---------CC---CCce
Q psy3751 493 KFAED---I------HFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESL-NTNEKI---------DK---KPLR 550 (967)
Q Consensus 493 ~~~~~---~------~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~-~~~~~~---------~~---~~~~ 550 (967)
-+... + .-.-.|+++-||+++.||.. +++.+-.. |+|... .+ ..|.
T Consensus 232 L~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~------------~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFV 299 (528)
T COG4108 232 LVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDH------------FLDALVDWAPSPRARQADTREVEPTEDKFSGFV 299 (528)
T ss_pred HHHhhccccCHHHHhcCCccceEehhhhhccCHHH------------HHHHHHhhCCCCCcccCCcCcccCCCCccceEE
Confidence 11110 0 00135888899999999887 44444333 433211 11 2233
Q ss_pred eeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeC----ccccceeecCCeEEEEEccccCCC
Q psy3751 551 FPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQML----NKSLDMAITGQSVTLIIKEYLDIS 626 (967)
Q Consensus 551 ~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~l~l~~~~~i~ 626 (967)
|-||--....+.- ++..-||.||.+..|+++.....|+..++..-+.+ +..+++|.|||+|||.-.+ .++
T Consensus 300 FKIQANMDp~HRD----RIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG--~~~ 373 (528)
T COG4108 300 FKIQANMDPKHRD----RIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHG--TIQ 373 (528)
T ss_pred EEEEcCCCccccc----ceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCC--cee
Confidence 3343333333333 78889999999999999999999999988876644 4579999999999987544 366
Q ss_pred CCcccccC
Q psy3751 627 RGNMLVSP 634 (967)
Q Consensus 627 ~G~vl~~~ 634 (967)
.||+++..
T Consensus 374 IGDT~t~G 381 (528)
T COG4108 374 IGDTFTEG 381 (528)
T ss_pred ecceeecC
Confidence 79998874
No 111
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=99.93 E-value=8.5e-25 Score=221.12 Aligned_cols=219 Identities=18% Similarity=0.203 Sum_probs=185.2
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEE-ecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcC
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKY 813 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 813 (967)
.+|.+|+|++..||.++||+||+++|++||+|++ |+|+...++..+.....+.. .+++...+....++..+.+|
T Consensus 3 ~~g~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t~~LL~~~~I~~~~is-----~h~hne~~~~~~li~~l~~g 77 (275)
T COG0313 3 MMGTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLIS-----YHEHNEKEKLPKLIPLLKKG 77 (275)
T ss_pred CCceEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHHHHHHHHhCCCCceec-----ccCCcHHHHHHHHHHHHhcC
Confidence 4688999999999999999999999999999999 99999999998765554332 23445555567788999999
Q ss_pred CeEEEE-EcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccccccccCCC
Q psy3751 814 NLVVRL-KGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPI 892 (967)
Q Consensus 814 ~~Vv~l-~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (967)
++|+++ ++|.|+++++|..|+++++++||+|+++||+||+..|.+..|+|- +++.+.+|++..+..+ ...+..+...
T Consensus 78 ~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~-~~F~F~GFLP~k~~~R-~~~l~~l~~~ 155 (275)
T COG0313 78 KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPS-QRFLFEGFLPRKSKER-RKRLEALANE 155 (275)
T ss_pred CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCC-CCeeEeccCCCCccHH-HHHHHHHHhc
Confidence 999999 899999999999999999999999999999999999999999997 5666666653333321 1234555556
Q ss_pred CCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhcc--CCCcEEEEEcC
Q psy3751 893 SDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQ--FEKPVLFMIGK 961 (967)
Q Consensus 893 ~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~--~~~~~vi~vg~ 961 (967)
..|+|||.+++++.+..+.+.+. ++.+++++++.+||...|.+++|++.|+.+...+ .+++.|++|..
T Consensus 156 ~~t~IfyEsphRl~~tL~d~~~~-~g~~r~v~vaRELTK~~Ee~~~g~~~e~~~~~~~~~~KGE~vlvv~~ 225 (275)
T COG0313 156 PRTLIFYESPHRLLATLEDIVEV-LGSDREVVVARELTKLFEEIYRGTLSELIEWLEEDTLKGEFVLVVEG 225 (275)
T ss_pred CCeEEEEecchhHHHHHHHHHHH-cCCCceEEEEeecccchhheecccHHHHHHHhhhcCCcccEEEEEeC
Confidence 88899999999999999999997 7778999999999999999999999999876544 89999999954
No 112
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.93 E-value=2.3e-25 Score=224.10 Aligned_cols=158 Identities=35% Similarity=0.505 Sum_probs=126.9
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhh----cccc--
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMK----GTVR-- 112 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~----~~~~-- 112 (967)
+++|+|||||||+|+|||+.++..+. .++.++|+|||.++|++++++++++++||++++++........ ....
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFP 79 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhccC
Confidence 47899999999999999999985532 4789999999999999999999999999999999977665431 1111
Q ss_pred -cCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCce
Q psy3751 113 -LRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENI 191 (967)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 191 (967)
.....+.+|..+|..++.+++++.+.+.+++|+|+||+.+|..+....... ..++..
T Consensus 80 ~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~~~~~~~~----------------------~~~~~~ 137 (173)
T cd01713 80 LPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALLPVVWTDD----------------------GKGGIL 137 (173)
T ss_pred CccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhCccccccC----------------------CCCCcE
Confidence 112233344457788898999988999999999999999998876541000 112357
Q ss_pred EEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 192 RVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 192 ~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
+++||++|+++|||+|++.+++|+|+||
T Consensus 138 ~~~Pl~~w~~~di~~~~~~~~l~~~~ly 165 (173)
T cd01713 138 KVNPLLDWTYEDVWAYLARHGLPYNPLY 165 (173)
T ss_pred EEcchhcCCHHHHHHHHHHcCCCCCHHH
Confidence 8999999999999999999999999999
No 113
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.92 E-value=5.3e-24 Score=260.80 Aligned_cols=154 Identities=24% Similarity=0.283 Sum_probs=127.0
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
....++||+|+||+|||||||+++|++..|.+.... .| ..+++|..++|+++|+|++.+...+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-------~~~~~D~~~~E~~rgiti~~~~~~~ 77 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-------DVRMTDTRADEAERGITIKSTGISL 77 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-------ceeeccCcHHHHHhCCceecceeEE
Confidence 456789999999999999999999999888774321 11 2456899999999999999876666
Q ss_pred ecC----------------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC
Q psy3751 400 NTP----------------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR 463 (967)
Q Consensus 400 ~~~----------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~ 463 (967)
.+. ++.++|+|||||.+|..++.++++.+|++|+|||+.+ |+..||+.++..+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~-------Gv~~~t~~~~~~~~~~~ 150 (843)
T PLN00116 78 YYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------GVCVQTETVLRQALGER 150 (843)
T ss_pred EeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC-------CCcccHHHHHHHHHHCC
Confidence 553 5678999999999999999999999999999999999 99999999999999999
Q ss_pred CCeEEEEEecCCccCc----C----HHHHHHHHHHHHHHHHHc
Q psy3751 464 IKHIIIAVNKMDLINY----N----QIFYKRIVYAYKKFAEDI 498 (967)
Q Consensus 464 ~~~iivviNK~D~~~~----~----~~~~~~i~~~~~~~~~~~ 498 (967)
+| +|+++||||+.-. + ...+..+.++++.++..+
T Consensus 151 ~p-~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~ 192 (843)
T PLN00116 151 IR-PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATY 192 (843)
T ss_pred CC-EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 88 7889999998721 1 245677777776444433
No 114
>PTZ00416 elongation factor 2; Provisional
Probab=99.91 E-value=4.4e-23 Score=252.08 Aligned_cols=151 Identities=21% Similarity=0.257 Sum_probs=125.2
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+.++||+++||+|||||||+++|++..|.++.. ..|+ .+++|..++|+++|+|++.+...+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~----------~~g~-------~~~~D~~~~E~~rgiti~~~~~~~~ 78 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK----------NAGD-------ARFTDTRADEQERGITIKSTGISLY 78 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc----------cCCc-------eeecccchhhHhhcceeeccceEEE
Confidence 4567899999999999999999999988876432 1111 3458999999999999998766666
Q ss_pred cC----------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEE
Q psy3751 401 TP----------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIA 470 (967)
Q Consensus 401 ~~----------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivv 470 (967)
+. ++.++|+|||||.+|..++..+++.+|++|+|||+.+ |+..|++.++..+...+++ +|++
T Consensus 79 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~-------g~~~~t~~~~~~~~~~~~p-~iv~ 150 (836)
T PTZ00416 79 YEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE-------GVCVQTETVLRQALQERIR-PVLF 150 (836)
T ss_pred eecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC-------CcCccHHHHHHHHHHcCCC-EEEE
Confidence 54 5679999999999999999999999999999999999 9999999999999988876 7889
Q ss_pred EecCCcc----CcC----HHHHHHHHHHHHHHHH
Q psy3751 471 VNKMDLI----NYN----QIFYKRIVYAYKKFAE 496 (967)
Q Consensus 471 iNK~D~~----~~~----~~~~~~i~~~~~~~~~ 496 (967)
+||||+. +.+ ...+..+.++++..+.
T Consensus 151 iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 151 INKVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred EEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 211 2356667777776665
No 115
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.91 E-value=8e-24 Score=217.75 Aligned_cols=167 Identities=22% Similarity=0.236 Sum_probs=136.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++||+|||||||+++|+...|.++.+. .| -.+++|+...|++||+|++.+...+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~----------~g-------~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~ 63 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL----------AG-------KARYMDSREDEQERGITMKSSAISLYFEYE 63 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc----------CC-------ceeeccCCHHHHHhccccccceEEEEEecC
Confidence 4899999999999999999999887664331 11 1456899999999999999876554443
Q ss_pred --------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 403 --------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 403 --------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
+..++|||||||.+|...+..+++.+|++++|||+.+ |...|+++++..+...+++ +|+|+|||
T Consensus 64 ~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~-------g~~~~t~~~l~~~~~~~~p-~ilviNKi 135 (222)
T cd01885 64 EEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVE-------GVCVQTETVLRQALKERVK-PVLVINKI 135 (222)
T ss_pred cccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCC-------CCCHHHHHHHHHHHHcCCC-EEEEEECC
Confidence 6789999999999999999999999999999999999 8899999999998888886 89999999
Q ss_pred Ccc------C--cCHHHHHHHHHHHHHHHHHcCCc--------c--c-e----EEeccccCCCcc
Q psy3751 475 DLI------N--YNQIFYKRIVYAYKKFAEDIHFQ--------N--I-N----TIPISALNGDNI 516 (967)
Q Consensus 475 D~~------~--~~~~~~~~i~~~~~~~~~~~~~~--------~--~-~----ii~iSa~~g~gi 516 (967)
|+. + +...++.++.+++..+++++..+ . + | +++.||+.|+..
T Consensus 136 D~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 136 DRLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred CcchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 976 1 23456788888888887776321 1 1 3 778899999877
No 116
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=4.2e-23 Score=212.33 Aligned_cols=157 Identities=33% Similarity=0.367 Sum_probs=126.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++||+|||||||+.+|.+. .+|..+.|.++|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~------------------------------~~~~~~~e~~~~~s~~~~~~~~~~~~~ 50 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV------------------------------WTVRFKEELERNITIKLGYANAKIYKC 50 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC------------------------------CCCCCCeeEEcCCceeecccccccccc
Confidence 58999999999999999999651 1467778888999998887665543
Q ss_pred -------------------------C------ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh
Q psy3751 403 -------------------------K------RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ 451 (967)
Q Consensus 403 -------------------------~------~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~ 451 (967)
+ ++++|||||||++|...++.++..+|++++|||+.++ +...+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~------~~~~~ 124 (203)
T cd01888 51 PNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP------CPQPQ 124 (203)
T ss_pred cCcCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC------CCCcc
Confidence 2 6899999999999999999999999999999999872 25568
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 452 TKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 452 t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+++..+...+++++|+|+||+|+.+. ..+....+.++++++.......+++++||++|.|++++
T Consensus 125 t~~~l~~~~~~~~~~iiivvNK~Dl~~~--~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 125 TSEHLAALEIMGLKHIIIVQNKIDLVKE--EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVL 190 (203)
T ss_pred hHHHHHHHHHcCCCcEEEEEEchhccCH--HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHH
Confidence 8888888888888789999999999852 23444455566666554334568999999999999984
No 117
>KOG0465|consensus
Probab=99.90 E-value=1.7e-23 Score=228.46 Aligned_cols=274 Identities=20% Similarity=0.260 Sum_probs=203.9
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++..||+|+.|.+||||||.+++++..|.+..- . ..+++ ...||+...||++||||+....++
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i--~--------ev~~~-----~a~md~m~~er~rgITiqSAAt~~ 99 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHI--G--------EVRGG-----GATMDSMELERQRGITIQSAATYF 99 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeec--c--------ccccC-----ceeeehHHHHHhcCceeeeceeee
Confidence 34578899999999999999999999977755211 0 01111 356899999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
.|.+.++++||||||-||..++.++++.-|++|+|+|+.. |++.||......++..++| .|..+||||....
T Consensus 100 ~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~-------GVqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 100 TWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVA-------GVESQTETVWRQMKRYNVP-RICFINKMDRMGA 171 (721)
T ss_pred eeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEccc-------ceehhhHHHHHHHHhcCCC-eEEEEehhhhcCC
Confidence 9999999999999999999999999999999999999999 9999999999999999999 5666999998764
Q ss_pred CH----------------------------------------------------------------HHHHHHHHHHHH--
Q psy3751 480 NQ----------------------------------------------------------------IFYKRIVYAYKK-- 493 (967)
Q Consensus 480 ~~----------------------------------------------------------------~~~~~i~~~~~~-- 493 (967)
+. +.-+++.+.+.+
T Consensus 172 ~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~D 251 (721)
T KOG0465|consen 172 SPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVD 251 (721)
T ss_pred ChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 40 000111111100
Q ss_pred ------HHHH--------------cCC--ccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCc--------
Q psy3751 494 ------FAED--------------IHF--QNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEK-------- 543 (967)
Q Consensus 494 ------~~~~--------------~~~--~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~-------- 543 (967)
|++. .-+ .-+|++.-||+++.|+.-+. ...++-+|.|..
T Consensus 252 E~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlL-----------DAVvdYLPsP~Ev~n~a~~k 320 (721)
T KOG0465|consen 252 ETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLL-----------DAVVDYLPSPSEVENYALNK 320 (721)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHH-----------HHHHHhCCChhhhccccccc
Confidence 1110 000 12588889999999998753 233333443311
Q ss_pred ------------CCC-CCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----ccc
Q psy3751 544 ------------IDK-KPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSL 606 (967)
Q Consensus 544 ------------~~~-~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v 606 (967)
..+ .||......+..... | ..-+-||.+|+|+.||.|+...++++.+|..+-..| ++|
T Consensus 321 e~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-G----qLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV 395 (721)
T KOG0465|consen 321 ETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-G----QLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDV 395 (721)
T ss_pred CCCCccceEeccCCCCCceeeeEEEeeecCc-c----ceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchh
Confidence 012 266555555544333 2 345669999999999999999999999988765433 379
Q ss_pred ceeecCCeEEEEEccccCCCCCcccccCC
Q psy3751 607 DMAITGQSVTLIIKEYLDISRGNMLVSPF 635 (967)
Q Consensus 607 ~~a~~G~~v~l~l~~~~~i~~G~vl~~~~ 635 (967)
+++.|||++++..- +...||++.+..
T Consensus 396 ~~v~AG~I~alfGi---dcasGDTftd~~ 421 (721)
T KOG0465|consen 396 NEVLAGDICALFGI---DCASGDTFTDKQ 421 (721)
T ss_pred hhhhccceeeeecc---ccccCceeccCc
Confidence 99999999998875 688899999863
No 118
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.90 E-value=8.4e-23 Score=211.55 Aligned_cols=175 Identities=23% Similarity=0.309 Sum_probs=138.7
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee-------
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY------- 398 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~------- 398 (967)
+|+++|+.++|||||+++|+. +..+. + . ......++++.+|.++|+|+.+....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~-------------~---~-~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~ 61 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDN-------------G---R-GKARLNLFRHKHEVESGRTSSVSNEILGFDSDG 61 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCC-------------C---C-CeEEeehhhhhhhhhcCchhhhhhhhcccCCCC
Confidence 589999999999999999985 11110 0 0 11122368999999999998654421
Q ss_pred -----------------eecCCceEEEeeChhhHHHHHHHHhhcc--cCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH
Q psy3751 399 -----------------FNTPKRKFIIADTPGHEQYTRNMITGAS--TADAVIILIDASKIKFNPSVNLLTQTKRHSIIA 459 (967)
Q Consensus 399 -----------------~~~~~~~~~liDtpG~~~~~~~~~~~~~--~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~ 459 (967)
++..++.++|+|||||++|.++++.++. .+|++++|||+.+ +...++++++..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~-------g~~~~d~~~l~~l 134 (224)
T cd04165 62 EVVNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA-------GIIGMTKEHLGLA 134 (224)
T ss_pred ceecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC-------CCcHHHHHHHHHH
Confidence 2334678999999999999999999985 7999999999998 8899999999999
Q ss_pred HHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCc-----------------------cceEEeccccCCCcc
Q psy3751 460 HLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQ-----------------------NINTIPISALNGDNI 516 (967)
Q Consensus 460 ~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------~~~ii~iSa~~g~gi 516 (967)
..+++| +|+|+||+|+.+ +..+....++++++++..|+. .+|++++||.+|+|+
T Consensus 135 ~~~~ip-~ivvvNK~D~~~--~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi 211 (224)
T cd04165 135 LALNIP-VFVVVTKIDLAP--ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGL 211 (224)
T ss_pred HHcCCC-EEEEEECccccC--HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCH
Confidence 999998 899999999874 556677777888777643322 358999999999999
Q ss_pred cccccCCCCCCCCcHHHHhhcccCC
Q psy3751 517 ISASNNMLWYNGPTLISLLESLNTN 541 (967)
Q Consensus 517 ~~l~~~~~w~~~~~L~~~l~~~~~~ 541 (967)
++ |.++|..+|++
T Consensus 212 ~~------------L~~~L~~lp~~ 224 (224)
T cd04165 212 DL------------LHAFLNLLPLR 224 (224)
T ss_pred HH------------HHHHHHhcCCC
Confidence 98 77888888753
No 119
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=2.3e-23 Score=225.19 Aligned_cols=257 Identities=19% Similarity=0.210 Sum_probs=197.0
Q ss_pred cccchhhhcCCEeecccCCCCCCCCccceeeeEEEeccccccccccccCCcCChHHHHHhhhhhhhhhhcccccccccch
Q psy3751 221 AHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGATRIDDQNSE 300 (967)
Q Consensus 221 ~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~~~~~~~~~~ 300 (967)
++...+.+.++.+++|+...+.++.|+..++.+|....+|+.+.+++++. ..++...+++...+.+...-.......-
T Consensus 76 Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~--~~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 76 QALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL--KAEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc--hhhhhHHHHHhcCCCCceEeehhhccCH
Confidence 34467889999999999999999999999999997779999999999887 4445667777766666543222222222
Q ss_pred hhHHhhhcccCcccccccccC-CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeecc
Q psy3751 301 ASMEKRKKTEAPEKKQSVFKK-HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379 (967)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (967)
...-..-....+..+...... ...++|+|+|.||+|||||+|+|+++...+.
T Consensus 154 ~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv--------------------------- 206 (444)
T COG1160 154 GDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIV--------------------------- 206 (444)
T ss_pred HHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEe---------------------------
Confidence 222221111111111111111 4689999999999999999999999766552
Q ss_pred CCchhhhccceeEeeceeeeecCCceEEEeeChhhH----------HH-HHHHHhhcccCCEEEEEEeCCCCCCCCCCCc
Q psy3751 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHE----------QY-TRNMITGASTADAVIILIDASKIKFNPSVNL 448 (967)
Q Consensus 380 d~~~~e~~~g~Ti~~~~~~~~~~~~~~~liDtpG~~----------~~-~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~ 448 (967)
....|+|.|.-...++++++++.++||+|.+ .| +..++.++..||++++|+||++ ++
T Consensus 207 -----~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-------~~ 274 (444)
T COG1160 207 -----SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-------GI 274 (444)
T ss_pred -----cCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-------Cc
Confidence 1235778888888899999999999999933 23 3446778899999999999999 99
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 449 ~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
..|..+.+.++...|.. +|+|+||+|+++.++..+++.+.+++..+..+++ .+++++||++|.|+..+.+
T Consensus 275 ~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~--a~i~~iSA~~~~~i~~l~~ 344 (444)
T COG1160 275 SEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF--APIVFISALTGQGLDKLFE 344 (444)
T ss_pred hHHHHHHHHHHHHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHhccccC--CeEEEEEecCCCChHHHHH
Confidence 99999999999999987 8889999999987667788888888888888877 5899999999999998654
No 120
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=3.4e-22 Score=204.34 Aligned_cols=160 Identities=29% Similarity=0.443 Sum_probs=126.4
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|++|+|||||+++|+...+ .+.+|...+|+++|+|++..+..+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~--------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~ 54 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS--------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKP 54 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc--------------------------hhhhccCHHHHHcCCeeeecceEEEeccc
Confidence 5899999999999999999986211 123677788999999999988777665
Q ss_pred ------------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEE
Q psy3751 403 ------------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIA 470 (967)
Q Consensus 403 ------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivv 470 (967)
+..+++||||||.+|...+..++..+|++++|+|+.+ +...++.+++..+...+.+ +++|
T Consensus 55 ~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~-------~~~~~~~~~~~~~~~~~~~-~iiv 126 (192)
T cd01889 55 KHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATK-------GIQTQTAECLVIGEILCKK-LIVV 126 (192)
T ss_pred ccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC-------CccHHHHHHHHHHHHcCCC-EEEE
Confidence 6789999999999999999999999999999999998 7777787777777777775 8899
Q ss_pred EecCCccCcCH--HHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 471 VNKMDLINYNQ--IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 471 iNK~D~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
+||+|+..... ...+++.+.+...+...+..+.+++++||++|.|+++
T Consensus 127 ~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~ 176 (192)
T cd01889 127 LNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAE 176 (192)
T ss_pred EECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHH
Confidence 99999984321 2233344444444444455567999999999999998
No 121
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.7e-22 Score=198.79 Aligned_cols=216 Identities=22% Similarity=0.173 Sum_probs=166.1
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEecccch-------HHHhcCCCceEEEecccccccchhHHHHHHHHHHHH
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALITN-------ELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCA 810 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (967)
++++||.|+.+..++|+++++++++||.||.+.+++. ++..++. +.+....+... ++. ...+++.+
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E~YTS~~~~~~~e~le~~~g--kev~~~~R~dl----E~~-~~~il~~a 73 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAEFYTSILLGSNLEKLEELIG--KEVILLDREDL----EEN-SRSILDRA 73 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEEeeecccccchHHHHHHHhC--CceEeccHHHH----hhc-chhHHHHH
Confidence 4699999999999999999999999999999765433 2222222 22221111111 111 13466677
Q ss_pred hcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccccccc---
Q psy3751 811 FKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYL--- 887 (967)
Q Consensus 811 ~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~~--- 887 (967)
.++ +|++|+.||||+..|+..|.-+++++|++++||||+|.++||++.+|+..+..+.+.++.+.+.++.+...++
T Consensus 74 ~~~-~Vall~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~s~yd~Ik 152 (260)
T COG1798 74 KDK-DVALLVAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPTSPYDVIK 152 (260)
T ss_pred hcC-CEEEEecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCCcHHHHHH
Confidence 665 5999999999999999999999999999999999999999999999999999999999998887766554322
Q ss_pred -ccCCCCCcEEE--------EeccccHHHHHHHHHhc----CCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCc
Q psy3751 888 -KNIPISDTLVE--------YMGGNNIFLTAKKLLKL----GFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKP 954 (967)
Q Consensus 888 -~~~~~~~t~vl--------~~~~~~~~~i~~~L~~~----g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~ 954 (967)
..-..-+|+++ ||+.++..++.-++.+. .+.++++++++.|+|.++|.++.+++++|....++.+.+
T Consensus 153 ~N~~~GLHTl~lLDi~~~~r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs~~~~v~ag~l~~l~~~Dfg~Plh 232 (260)
T COG1798 153 ENLERGLHTLVLLDIKEDERYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVVRAGTLEELADEDFGEPLH 232 (260)
T ss_pred HhhhcCccceEEEEecccccccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCCCCceEEechHHHHhhcccCCCce
Confidence 22223578888 56655554433333332 356889999999999999999999999999988888899
Q ss_pred EEEEEcC
Q psy3751 955 VLFMIGK 961 (967)
Q Consensus 955 ~vi~vg~ 961 (967)
+++|.|+
T Consensus 233 ~lvvp~~ 239 (260)
T COG1798 233 SLVVPGR 239 (260)
T ss_pred EEEEecc
Confidence 9999997
No 122
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.88 E-value=1.9e-21 Score=235.60 Aligned_cols=226 Identities=19% Similarity=0.261 Sum_probs=168.0
Q ss_pred hhhccceeEeeceeeeecCC------------------ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCC
Q psy3751 384 SEREQGITIDVAYRYFNTPK------------------RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPS 445 (967)
Q Consensus 384 ~e~~~g~Ti~~~~~~~~~~~------------------~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~ 445 (967)
.+...|||++++...+..+. ..++|||||||++|...+..+++.+|++++|+|+++
T Consensus 488 ~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~------ 561 (1049)
T PRK14845 488 KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINE------ 561 (1049)
T ss_pred cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcc------
Confidence 34457999999988776542 128999999999999888888899999999999998
Q ss_pred CCchhhHHHHHHHHHHcCCCeEEEEEecCCcc-CcC---------------HHHHHHHHHHHHHH---HHHcCC------
Q psy3751 446 VNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI-NYN---------------QIFYKRIVYAYKKF---AEDIHF------ 500 (967)
Q Consensus 446 ~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~-~~~---------------~~~~~~i~~~~~~~---~~~~~~------ 500 (967)
|+.+|+.+++..+...++| +|+|+||+|+. +|. +...+++.+.+.++ +.+.|+
T Consensus 562 -Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~ 639 (1049)
T PRK14845 562 -GFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFD 639 (1049)
T ss_pred -cCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhh
Confidence 8999999999999998887 99999999996 343 11122222222222 334433
Q ss_pred ------ccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccC------CCcCCCCCceeeEEEeecCCCccCCCce
Q psy3751 501 ------QNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNT------NEKIDKKPLRFPVQLVARHCGHISKDFR 568 (967)
Q Consensus 501 ------~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~------~~~~~~~~~~~~i~~v~~~~~~~~~~~~ 568 (967)
.+++++|+||++|+|+++|. +++..+.. .....+.|++++|.+++...|.| +
T Consensus 640 ~~~d~~~~v~iVpVSA~tGeGId~Ll------------~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G----~ 703 (1049)
T PRK14845 640 RVQDFTRTVAIVPVSAKTGEGIPELL------------MMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLG----T 703 (1049)
T ss_pred hhhhcCCCceEEEEEcCCCCCHHHHH------------HHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCce----e
Confidence 25799999999999999853 33322211 12234678999999999999988 8
Q ss_pred EEEEEEEeeeecCCCEEEEecCCc--EEEEEEEEeC------------ccccceeecCCeEEEEEccccCCCCCccccc
Q psy3751 569 GYMGRIESGIIKKNDCLIVEPSGK--KATIKDIQML------------NKSLDMAITGQSVTLIIKEYLDISRGNMLVS 633 (967)
Q Consensus 569 v~~G~v~~G~l~~g~~v~i~p~~~--~~~V~~i~~~------------~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~ 633 (967)
+++|.|.+|+|++||.|.++|.+. .++|+++... ...++++.|+.-|-+...+...+..|+.+..
T Consensus 704 vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v 782 (1049)
T PRK14845 704 TIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRI 782 (1049)
T ss_pred EEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEE
Confidence 999999999999999999999764 6899998753 1356788888777776444334456665443
No 123
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.88 E-value=5.8e-22 Score=210.89 Aligned_cols=167 Identities=24% Similarity=0.217 Sum_probs=135.6
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++||+|||||||+++|++..|.+.. .|. .-+-++++|..++|+++|+|++.+...+++++.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~------------~g~---v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~ 65 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHK------------IGE---VHGGGATMDFMEQERERGITIQSAATTCFWKDHR 65 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcc------------ccc---ccCCccccCCCccccCCCcCeeccEEEEEECCEE
Confidence 6999999999999999999987776532 111 1122567999999999999999999999999999
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYK 485 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~ 485 (967)
++++|||||.+|...+..+++.+|++|+|||+.+ |+..++.+++..+...++| +++++||+|+.+.+. +
T Consensus 66 i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~-------g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~~---~ 134 (270)
T cd01886 66 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVA-------GVEPQTETVWRQADRYNVP-RIAFVNKMDRTGADF---F 134 (270)
T ss_pred EEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCC-------CCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCH---H
Confidence 9999999999999999999999999999999999 8899999999999999988 678999999986543 3
Q ss_pred HHHHHHHHHHHHcCCccceEEeccccCCC-cccccc
Q psy3751 486 RIVYAYKKFAEDIHFQNINTIPISALNGD-NIISAS 520 (967)
Q Consensus 486 ~i~~~~~~~~~~~~~~~~~ii~iSa~~g~-gi~~l~ 520 (967)
.+.++++..+....+ ..++|+|+..+. |+.++.
T Consensus 135 ~~~~~l~~~l~~~~~--~~~~Pisa~~~f~g~vd~~ 168 (270)
T cd01886 135 RVVEQIREKLGANPV--PLQLPIGEEDDFRGVVDLI 168 (270)
T ss_pred HHHHHHHHHhCCCce--EEEeccccCCCceEEEEcc
Confidence 455555555533222 356899998663 555544
No 124
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=99.87 E-value=1.8e-21 Score=203.42 Aligned_cols=213 Identities=16% Similarity=0.078 Sum_probs=173.3
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEE-ecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCeE
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLV 816 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V 816 (967)
++|+|++..||.+++|+||+++|++||+|+| |+|+...++.++......... +.+...+....++....+|++|
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t~kLL~~~~I~~~~~~~-----~~hn~~~~~~~l~~~l~~g~~v 75 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTSKLLLHLGIIATPKAFH-----IDNEFQEKQNLLAAKLEIGNNI 75 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhHHHHHHhcCCCCceEEE-----ecccHhHHHHHHHHHHHcCCcE
Confidence 3799999999999999999999999999999 899999999887554332211 2233334445677788899999
Q ss_pred EEE-EcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccc--cccccccCCCC
Q psy3751 817 VRL-KGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTML--KNNYLKNIPIS 893 (967)
Q Consensus 817 v~l-~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 893 (967)
+++ ++|.|++.++|..|++.+.+.|++|.++||+||+.+|.+..|++- +++.+.+|+ ++... ...+..+....
T Consensus 76 alvSDAG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~-~~f~F~GFl---p~k~~~r~~~l~~l~~~~ 151 (276)
T TIGR00096 76 AVSSDAGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPAT-DRFFFGGFL---PKKSKRRQALKAYIAEER 151 (276)
T ss_pred EEEecCCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCC-CceEEeeeC---CCChHHHHHHHHHHhCCC
Confidence 999 889999999999999999999999999999999999999999986 444444433 33321 12345556678
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhc-----cCCCcEEEEEcC
Q psy3751 894 DTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIF-----QFEKPVLFMIGK 961 (967)
Q Consensus 894 ~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~-----~~~~~~vi~vg~ 961 (967)
.|+|||.+++++..+.+.+... + ++++++++.++|...|.+++|++.++.+... ..++..|+|++.
T Consensus 152 ~t~ifyEsp~Rl~~~L~~l~~~-~-g~r~i~~arELTK~~E~~~~g~~~e~~~~~~~~~~~~~kGE~vlvi~g 222 (276)
T TIGR00096 152 TTVFFYESHHRLLTTLTDLNVF-L-GSERFVGAAELTKKESEYWFGTVGQLLPDITEDTNNRKGGEVILIING 222 (276)
T ss_pred CeEEEEECcHhHHHHHHHHHHh-c-CCceEEEEEecCCCceEEEeCCHHHHHHHHHhccCCCCCeEEEEEEeC
Confidence 8999999999999999999775 3 4788999999999999999999999987643 258999898864
No 125
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=4.5e-21 Score=191.01 Aligned_cols=156 Identities=31% Similarity=0.552 Sum_probs=123.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-C
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-K 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~ 403 (967)
++|+++|++|+|||||+++|++.. .+....+..+++|++..+..+... +
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~------------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~ 50 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIE------------------------------TDRLPEEKKRGITIDLGFAYLDLPSG 50 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcc------------------------------cccchhhhccCceEEeeeEEEEecCC
Confidence 479999999999999999998611 123344566788988888777776 7
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF 483 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 483 (967)
..+.+|||||+++|...+..+++.+|++++|+|+++ ++..++.+++..+...+.+++++|+||+|+.+. ..
T Consensus 51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-------~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~--~~ 121 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-------GIMPQTREHLEILELLGIKRGLVVLTKADLVDE--DW 121 (164)
T ss_pred cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-------CccHhHHHHHHHHHHhCCCcEEEEEECccccCH--HH
Confidence 789999999999999988888999999999999988 777788888777777787669999999999753 22
Q ss_pred HHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 484 YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 484 ~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.....+++.+.++..+....+++++||++|.|++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 122 LELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred HHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 334445556666554334568999999999999984
No 126
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=4.5e-22 Score=203.81 Aligned_cols=224 Identities=24% Similarity=0.326 Sum_probs=141.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.--|+|+|.||+|||||+|+|+++. ++..|.+.++|+..+ +|+ +..++
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~K----------isIvS~k~QTTR~~I--------------~GI--------~t~~~ 53 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQK----------ISIVSPKPQTTRNRI--------------RGI--------VTTDN 53 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCc----------eEeecCCcchhhhhe--------------eEE--------EEcCC
Confidence 3459999999999999999999832 222333333322221 344 66778
Q ss_pred ceEEEeeChh-h-------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 404 RKFIIADTPG-H-------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 404 ~~~~liDtpG-~-------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
.++.|+|||| | +...+....++..+|+++||||+.+ ++.......+..++....| +|+++||+|
T Consensus 54 ~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~-------~~~~~d~~il~~lk~~~~p-vil~iNKID 125 (298)
T COG1159 54 AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE-------GWGPGDEFILEQLKKTKTP-VILVVNKID 125 (298)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccc-------cCCccHHHHHHHHhhcCCC-eEEEEEccc
Confidence 9999999999 2 2345667778899999999999999 6767777777777664555 899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCC-------CC-CCCCcHHHHhhcccCCCcCCCC
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNM-------LW-YNGPTLISLLESLNTNEKIDKK 547 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~-------~w-~~~~~L~~~l~~~~~~~~~~~~ 547 (967)
....... +......+.....+. .++|+||++|.|++.+.+.+ +| |+.+.+.+.-+++...+..+++
T Consensus 126 ~~~~~~~----l~~~~~~~~~~~~f~--~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk 199 (298)
T COG1159 126 KVKPKTV----LLKLIAFLKKLLPFK--EIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREK 199 (298)
T ss_pred cCCcHHH----HHHHHHHHHhhCCcc--eEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHH
Confidence 9875332 122222233334443 78999999999999864311 22 2222222222222222233445
Q ss_pred CceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEE
Q psy3751 548 PLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIK 597 (967)
Q Consensus 548 ~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~ 597 (967)
.+++.-+++++...+..+.+ .-+ ..|.+++...|++...+++..|.
T Consensus 200 ~~~~l~eElPhsv~VeIe~~---~~~-~~~~~~I~a~I~Ver~sQK~IiI 245 (298)
T COG1159 200 LLLLLREELPHSVAVEIEEF---EER-EKGLLKIHATIYVERESQKGIII 245 (298)
T ss_pred HHHhcccccCceEEEEEEEE---Eec-CCCeEEEEEEEEEecCCccceEE
Confidence 55555556665443321111 112 56778888888888887766553
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=1.6e-20 Score=190.02 Aligned_cols=163 Identities=25% Similarity=0.353 Sum_probs=123.0
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee----
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN---- 400 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~---- 400 (967)
+||+++|++|+|||||+++|++..+.+.+.. ...+++++...|+.+|+|.+.....+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ 62 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE------------------MKEQVLDSMDLERERGITIKAQTVRLNYKAK 62 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC------------------CceEeccCChhHHHCCCeEecceEEEEEecC
Confidence 4799999999999999999998666542210 113557888899999999876654443
Q ss_pred -cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 401 -TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 401 -~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
..+..++|||||||.+|...+..+++.+|++|+|+|+++ +...++.+++..+...+++ +|+|+||+|+.+.
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~-------~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~ 134 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQ-------GVEAQTLANFYLALENNLE-IIPVINKIDLPSA 134 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCC-------CccHhhHHHHHHHHHcCCC-EEEEEECCCCCcC
Confidence 345678899999999999999999999999999999998 6666677776666666776 8999999998753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. .+..+ ++.+.+++....++++||++|.|++++
T Consensus 135 ~~---~~~~~---~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (179)
T cd01890 135 DP---ERVKQ---QIEDVLGLDPSEAILVSAKTGLGVEDL 168 (179)
T ss_pred CH---HHHHH---HHHHHhCCCcccEEEeeccCCCCHHHH
Confidence 32 22222 233344543345899999999999984
No 128
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.85 E-value=1.3e-20 Score=193.09 Aligned_cols=170 Identities=26% Similarity=0.305 Sum_probs=132.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|++|+|||||+++|++..+.+.... . . -.+.++..+.|..+|+|++.....+..++
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~------------~----~-~~~~~~~~~~e~~~g~t~~~~~~~~~~~~ 64 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENE------------E----V-EERVMDSNDLERERGITILAKNTAVTYKD 64 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccC------------c----c-cccccccchhHHhcccccccceeEEEECC
Confidence 46899999999999999999997544442211 0 0 02457888889999999988888888888
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF 483 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 483 (967)
..++++|||||++|...+...++.+|++++|+|+++ +...++...+..+...+++ +++|+||+|+.....
T Consensus 65 ~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~-------~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-- 134 (194)
T cd01891 65 TKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-------GPMPQTRFVLKKALELGLK-PIVVINKIDRPDARP-- 134 (194)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCC-------CccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCH--
Confidence 999999999999999999999999999999999998 5666777767666667877 788999999975432
Q ss_pred HHHHHHHHHHHHHHcCCc----cceEEeccccCCCccccccc
Q psy3751 484 YKRIVYAYKKFAEDIHFQ----NINTIPISALNGDNIISASN 521 (967)
Q Consensus 484 ~~~i~~~~~~~~~~~~~~----~~~ii~iSa~~g~gi~~l~~ 521 (967)
....+++..+++.++.. +.+++++||++|.|+.++..
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 135 -EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred -HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 34445555555444321 45899999999999987643
No 129
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.85 E-value=1.6e-20 Score=194.93 Aligned_cols=177 Identities=21% Similarity=0.278 Sum_probs=133.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++||+|+|||||+++|++..+.+... +. .....++++|...+|+++|+|++.....+.+.
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~--~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~ 66 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GK--DGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS 66 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------cc--ccCCceeECCCCHHHHHcCccccccceeEEEEcC
Confidence 479999999999999999999877655221 11 12334567899999999999998777666432
Q ss_pred ---CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC-
Q psy3751 403 ---KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN- 478 (967)
Q Consensus 403 ---~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~- 478 (967)
...++++|||||.+|...+..++..+|++++|+|+.+ +...++.+++..+...+.+ +++|+||+|++.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~-------~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~ 138 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVE-------GVTSNTERLIRHAILEGLP-IVLVINKIDRLIL 138 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCC-------CCCHHHHHHHHHHHHcCCC-EEEEEECcccCcc
Confidence 3678999999999999999999999999999999998 6666777777777667755 899999999862
Q ss_pred -------cCHHHHHHHHHHHHHHHHHcCCc-cceEEeccccCCCcccccccCCCCCC
Q psy3751 479 -------YNQIFYKRIVYAYKKFAEDIHFQ-NINTIPISALNGDNIISASNNMLWYN 527 (967)
Q Consensus 479 -------~~~~~~~~i~~~~~~~~~~~~~~-~~~ii~iSa~~g~gi~~l~~~~~w~~ 527 (967)
+...++.++.+++..+++.++++ .+.++|++ .|+...+..+.|+-
T Consensus 139 ~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~----~nv~~~s~~~~w~~ 191 (213)
T cd04167 139 ELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPEN----GNVCFASSKFGFCF 191 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCC----CeEEEEecCCCeEE
Confidence 22356777888888888887763 23455553 45555555566654
No 130
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.85 E-value=1.7e-20 Score=196.28 Aligned_cols=131 Identities=32% Similarity=0.326 Sum_probs=114.2
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++||+|+|||||+++|++..|.+.. .|. ..+-.+.+|..++|+++|+|++.....+.+++.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~------------~g~---v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~ 65 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRK------------LGS---VDKGTTRTDTMELERQRGITIFSAVASFQWEDTK 65 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccc------------ccc---ccCCcccCCCchhHhhCCCceeeeeEEEEECCEE
Confidence 6899999999999999999998776532 111 1122356899999999999999999999999999
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++++|||||.+|...+..+++.+|++++|+|+.+ +...++.+++..+...++| +++++||+|+...
T Consensus 66 i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~-------g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a 131 (237)
T cd04168 66 VNLIDTPGHMDFIAEVERSLSVLDGAILVISAVE-------GVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGA 131 (237)
T ss_pred EEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCC-------CCCHHHHHHHHHHHHcCCC-EEEEEECccccCC
Confidence 9999999999999999999999999999999998 7888999999999888987 7789999999854
No 131
>KOG0467|consensus
Probab=99.81 E-value=6.3e-19 Score=197.35 Aligned_cols=172 Identities=21% Similarity=0.259 Sum_probs=137.9
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
....+.||+++.|+|||||||...|+...|.|..+. .|+ -..+|...+|+.||||...+....
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rl----------agk-------irfld~redeq~rgitmkss~is~ 67 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRL----------AGK-------IRFLDTREDEQTRGITMKSSAISL 67 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhh----------ccc-------eeeccccchhhhhceeeecccccc
Confidence 456789999999999999999999999888875443 232 124899999999999999988888
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc--
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI-- 477 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~-- 477 (967)
..+++.+++||+|||-||..+..++.+-+|.++++||+.+ |+..||...+..+-.-|.+ .|+|+||||..
T Consensus 68 ~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvve-------gv~~qt~~vlrq~~~~~~~-~~lvinkidrl~~ 139 (887)
T KOG0467|consen 68 LHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVE-------GVCSQTYAVLRQAWIEGLK-PILVINKIDRLIT 139 (887)
T ss_pred ccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeecc-------ccchhHHHHHHHHHHccCc-eEEEEehhhhHHH
Confidence 7889999999999999999999999999999999999999 9999999999988888888 78899999932
Q ss_pred --C-cCHHHHHHHHH---HHHHHHHH---------------------cCCccceEEeccccCCCcc
Q psy3751 478 --N-YNQIFYKRIVY---AYKKFAED---------------------IHFQNINTIPISALNGDNI 516 (967)
Q Consensus 478 --~-~~~~~~~~i~~---~~~~~~~~---------------------~~~~~~~ii~iSa~~g~gi 516 (967)
. ..++.+..+.. ++..+..+ ++..+-+++..||..|+|+
T Consensus 140 el~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f 205 (887)
T KOG0467|consen 140 ELKLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGF 205 (887)
T ss_pred HHhcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccc
Confidence 1 23444444333 33222221 1223457899999999876
No 132
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=4.1e-19 Score=189.05 Aligned_cols=137 Identities=26% Similarity=0.340 Sum_probs=115.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCC-CceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSG-HNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
.+||+++||+|||||||+++|++..|.++.. |... ..-+-..++|..++|+++|+|+..+...+++.
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~------------g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~ 69 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREA------------GAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR 69 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccC------------ceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC
Confidence 4789999999999999999999987776321 1100 00012345899999999999999999999999
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
+.++++||||||.+|...+..+++.+|++|+|+|++. ++..++...+..+...++| +++++||+|+...+
T Consensus 70 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~-------g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~ 139 (267)
T cd04169 70 DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-------GVEPQTRKLFEVCRLRGIP-IITFINKLDREGRD 139 (267)
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC-------CccHHHHHHHHHHHhcCCC-EEEEEECCccCCCC
Confidence 9999999999999999999999999999999999998 7778888888888888887 88899999987654
No 133
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=7.5e-19 Score=179.44 Aligned_cols=167 Identities=34% Similarity=0.480 Sum_probs=130.6
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
+|+++|.+|+|||||+|+|++........ .......++....+..+|+|++.....+...+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERD-----------------GTVEETFLDVLKEERERGITIKSGVATFEWPDRR 63 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcC-----------------CceecccccCCHHHHHcCCCeecceEEEeeCCEE
Confidence 58999999999999999999854432110 0111134677788889999999888888888889
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYK 485 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~ 485 (967)
++|+||||+.+|...+...+..+|++++|+|+.+ +...+..+.+..+...+.+ +++|+||+|+.. +..+.
T Consensus 64 ~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~--~~~~~ 133 (189)
T cd00881 64 VNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANE-------GVQPQTREHLRIAREGGLP-IIVAINKIDRVG--EEDLE 133 (189)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCC-------CCcHHHHHHHHHHHHCCCC-eEEEEECCCCcc--hhcHH
Confidence 9999999999999988899999999999999988 6666777777777665655 999999999985 22344
Q ss_pred HHHHHHHHHHHHcCC-----------ccceEEeccccCCCccccc
Q psy3751 486 RIVYAYKKFAEDIHF-----------QNINTIPISALNGDNIISA 519 (967)
Q Consensus 486 ~i~~~~~~~~~~~~~-----------~~~~ii~iSa~~g~gi~~l 519 (967)
...+.+++.++..+. ...+++++||++|.|++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l 178 (189)
T cd00881 134 EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence 555666666665542 3578999999999999984
No 134
>KOG3123|consensus
Probab=99.79 E-value=3.1e-19 Score=168.63 Aligned_cols=216 Identities=23% Similarity=0.198 Sum_probs=160.4
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEecccchH-------HHhcCCCceEEEecccccccchhHHHHHHHHHHHH
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNE-------LLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCA 810 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (967)
++|+||.|.|+..+||+|+++++++|.-|+..+..+-- +-.++. .+.+..+ +.+..++ ...|+..+
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylEaYTSil~~~l~~~lEk~yG-k~iilAD-----RemvEq~-sd~il~~a 73 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLEAYTSILGVGLDATLEKFYG-KEIILAD-----REMVEQE-SDKILDEA 73 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHHHHHHHHHhhhhHHHHHHhC-ceeEecc-----HHHHHhh-HHHHhhhh
Confidence 36999999999999999999999999999975543221 111121 1111211 1122222 23455555
Q ss_pred hcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccccccccC
Q psy3751 811 FKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNI 890 (967)
Q Consensus 811 ~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (967)
.. .+|++|+.|||+...++..|+-++++.||+|+||...|-+.|. ..+|+.+++.++..|+.+++..|+++..++...
T Consensus 74 d~-~dVa~LVVGdPfgATTHsDlvlRAk~~~ipv~vIHNASimNav-G~CGLqlY~fGetVSiv~ftd~wrP~SfydkI~ 151 (272)
T KOG3123|consen 74 DK-EDVAFLVVGDPFGATTHSDLVLRAKELGIPVEVIHNASIMNAV-GCCGLQLYNFGETVSIVFFTDNWRPESFYDKIK 151 (272)
T ss_pred hh-cceEEEEecCcccccchhhhheehhhcCCCeEEEechHHHhhh-ccceeeeeccCcEEEEEEEccCcCchhHHHHHH
Confidence 44 4899999999999999999999999999999999999666655 559999999999999999999998865443322
Q ss_pred ----CCCCcEEEEe-------------------ccc--cHHHHHHHHHh----c---CCCCCCcEEEEEecCCCCeEEEE
Q psy3751 891 ----PISDTLVEYM-------------------GGN--NIFLTAKKLLK----L---GFLPTTPVIVVENCSLSNQKITR 938 (967)
Q Consensus 891 ----~~~~t~vl~~-------------------~~~--~~~~i~~~L~~----~---g~~~~~~v~v~~~l~~~~E~i~~ 938 (967)
..-+|++++. +++ ...+.+++|.+ + -+.++++++.+.|+|.++|.|+.
T Consensus 152 ~Nr~~glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~R~Gs~~q~i~~ 231 (272)
T KOG3123|consen 152 ENRQLGLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVARVGSDDQKIVA 231 (272)
T ss_pred HhhhcCceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEEecCCCcceeeh
Confidence 2357888842 111 12233444433 2 36789999999999999999999
Q ss_pred EehhhHHHhhccCCCcEEEEEcCC
Q psy3751 939 LILLDLKKKIFQFEKPVLFMIGKS 962 (967)
Q Consensus 939 ~~l~~l~~~~~~~~~~~vi~vg~~ 962 (967)
||+.+|.+..++.+-+++|++|+.
T Consensus 232 gt~~~l~~~d~G~PLHslii~ge~ 255 (272)
T KOG3123|consen 232 GTIKDLAEVDFGEPLHSLIIPGET 255 (272)
T ss_pred eeHHhHhhcccCCCceeEEeecCc
Confidence 999999998899999999999953
No 135
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=7.3e-19 Score=203.38 Aligned_cols=249 Identities=18% Similarity=0.190 Sum_probs=156.3
Q ss_pred hhcCCEeecccCCCCCCCCccceeeeEEEeccccccccccccCCcCChHHHHHhhhhhhhhhhcccccccccchh-hHHh
Q psy3751 227 IKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGATRIDDQNSEA-SMEK 305 (967)
Q Consensus 227 ~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~~~~~~~~~~~-~~~~ 305 (967)
...++.+++++...+..+.+......+|....+++.+.++.+...... ...++......+............. ..+.
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VAAEFYSLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cHHHHHhcCCCCeEEEeCCcCCChHHHHHH
Confidence 344567777777766666665555556655667788887777533221 1122222111111110001111111 1111
Q ss_pred hhcccCcccccccccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhh
Q psy3751 306 RKKTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESE 385 (967)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e 385 (967)
.... .+............++|+++|++|+|||||+|+|++....+ ..
T Consensus 155 i~~~-l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~--------------------------------~~ 201 (429)
T TIGR03594 155 ILEL-LPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI--------------------------------VS 201 (429)
T ss_pred HHHh-cCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeee--------------------------------cC
Confidence 1111 11111111223456899999999999999999999732211 11
Q ss_pred hccceeEeeceeeeecCCceEEEeeChhhHHH----------H-HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH
Q psy3751 386 REQGITIDVAYRYFNTPKRKFIIADTPGHEQY----------T-RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKR 454 (967)
Q Consensus 386 ~~~g~Ti~~~~~~~~~~~~~~~liDtpG~~~~----------~-~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~ 454 (967)
...|+|.+.....+..++..+.++||||+.++ . ..+..++..+|++|+|+|+.+ +...+..+
T Consensus 202 ~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~-------~~~~~~~~ 274 (429)
T TIGR03594 202 DIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATE-------GITEQDLR 274 (429)
T ss_pred CCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCC-------CccHHHHH
Confidence 23577777766677777889999999996432 1 234567889999999999998 78888888
Q ss_pred HHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 455 HSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 455 ~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
.+..+...+.+ +|+|+||+|+.+ ++..++++.+.+...+...+ .++++++||++|.|+.++.+
T Consensus 275 ~~~~~~~~~~~-iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~--~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 275 IAGLILEAGKA-LVIVVNKWDLVK-DEKTREEFKKELRRKLPFLD--FAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred HHHHHHHcCCc-EEEEEECcccCC-CHHHHHHHHHHHHHhcccCC--CCceEEEeCCCCCCHHHHHH
Confidence 88777777776 999999999983 44555666666665554433 36899999999999998754
No 136
>KOG1144|consensus
Probab=99.78 E-value=1.2e-18 Score=193.22 Aligned_cols=228 Identities=22% Similarity=0.334 Sum_probs=156.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP- 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 402 (967)
..-++|+||+|+|||-|+..|-+. +.++.-..|+|..++..+|...
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~t---------------------------------NVqegeaggitqqIgAt~fp~~n 521 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGT---------------------------------NVQEGEAGGITQQIGATYFPAEN 521 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcc---------------------------------ccccccccceeeeccccccchHH
Confidence 345899999999999999998751 1122233577777766655432
Q ss_pred -----------------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCC
Q psy3751 403 -----------------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIK 465 (967)
Q Consensus 403 -----------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~ 465 (967)
--.+.+||||||+.|..-..+|.+.||++|||||..+ |+.+||.+.+.+++..+.|
T Consensus 522 i~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImh-------GlepqtiESi~lLR~rktp 594 (1064)
T KOG1144|consen 522 IREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMH-------GLEPQTIESINLLRMRKTP 594 (1064)
T ss_pred HHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhc-------cCCcchhHHHHHHHhcCCC
Confidence 1237899999999999999999999999999999999 9999999999999988887
Q ss_pred eEEEEEecCCcc-CcC----------------------HHHHHHHHHHHHHH--HHHcCCc------cceEEeccccCCC
Q psy3751 466 HIIIAVNKMDLI-NYN----------------------QIFYKRIVYAYKKF--AEDIHFQ------NINTIPISALNGD 514 (967)
Q Consensus 466 ~iivviNK~D~~-~~~----------------------~~~~~~i~~~~~~~--~~~~~~~------~~~ii~iSa~~g~ 514 (967)
|||++||+|.. +|. ..+++.+..++.+. -..+.++ -+.++|+||.+|+
T Consensus 595 -FivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe 673 (1064)
T KOG1144|consen 595 -FIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE 673 (1064)
T ss_pred -eEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC
Confidence 99999999964 332 11222222211110 0001111 3688999999999
Q ss_pred cccccccCCCCCCCCcHHHHhhccc----CCCcCCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecC
Q psy3751 515 NIISASNNMLWYNGPTLISLLESLN----TNEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPS 590 (967)
Q Consensus 515 gi~~l~~~~~w~~~~~L~~~l~~~~----~~~~~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~ 590 (967)
||.+| +.+|-.+. ...-..-..+...|.+|-.+.|.| +.+---+..|.|+.||.|.++..
T Consensus 674 GipdL------------l~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~G----tTIDViLvNG~L~eGD~IvvcG~ 737 (1064)
T KOG1144|consen 674 GIPDL------------LLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHG----TTIDVILVNGELHEGDQIVVCGL 737 (1064)
T ss_pred CcHHH------------HHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCC----ceEEEEEEcceeccCCEEEEcCC
Confidence 99985 22222221 111111233556677777777776 55666788999999999999765
Q ss_pred C----------------cEEEEEEEEeCccccce
Q psy3751 591 G----------------KKATIKDIQMLNKSLDM 608 (967)
Q Consensus 591 ~----------------~~~~V~~i~~~~~~v~~ 608 (967)
+ +..+|++-.+||+.|..
T Consensus 738 ~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvka 771 (1064)
T KOG1144|consen 738 QGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKA 771 (1064)
T ss_pred CCchhHHHHHhcCCcchHhhccccceeehhHhhh
Confidence 4 23567776666665443
No 137
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=7.3e-19 Score=168.39 Aligned_cols=143 Identities=25% Similarity=0.386 Sum_probs=99.4
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
++|+++|.||+|||||+|+|++....+ -.-.|.|++.....+.+.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v---------------------------------~n~pG~Tv~~~~g~~~~~~~ 47 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV---------------------------------GNWPGTTVEKKEGIFKLGDQ 47 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE---------------------------------EESTTSSSEEEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee---------------------------------cCCCCCCeeeeeEEEEecCc
Confidence 579999999999999999999832111 11258898888888999999
Q ss_pred eEEEeeChhh---------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 405 KFIIADTPGH---------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 405 ~~~liDtpG~---------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
.+.|+|+||. +......+. ...+|++++|+||+. ..+....+..+..+|+| +|+|+||+|
T Consensus 48 ~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~D~ii~VvDa~~---------l~r~l~l~~ql~e~g~P-~vvvlN~~D 116 (156)
T PF02421_consen 48 QVELVDLPGIYSLSSKSEEERVARDYLL-SEKPDLIIVVVDATN---------LERNLYLTLQLLELGIP-VVVVLNKMD 116 (156)
T ss_dssp EEEEEE----SSSSSSSHHHHHHHHHHH-HTSSSEEEEEEEGGG---------HHHHHHHHHHHHHTTSS-EEEEEETHH
T ss_pred eEEEEECCCcccCCCCCcHHHHHHHHHh-hcCCCEEEEECCCCC---------HHHHHHHHHHHHHcCCC-EEEEEeCHH
Confidence 9999999992 111122221 368999999999986 23344455566678988 999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..... +.-+...+.+.+|. |++|+||++|+|++++
T Consensus 117 ~a~~~g-----~~id~~~Ls~~Lg~---pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 117 EAERKG-----IEIDAEKLSERLGV---PVIPVSARTGEGIDEL 152 (156)
T ss_dssp HHHHTT-----EEE-HHHHHHHHTS----EEEEBTTTTBTHHHH
T ss_pred HHHHcC-----CEECHHHHHHHhCC---CEEEEEeCCCcCHHHH
Confidence 875322 11123445555676 8999999999999984
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.78 E-value=4.4e-18 Score=170.16 Aligned_cols=149 Identities=26% Similarity=0.351 Sum_probs=111.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC---
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP--- 402 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--- 402 (967)
.|+++|++|+|||||+++|+...- ......++|.+.....+...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~---------------------------------~~~~~~~~t~~~~~~~~~~~~~~ 48 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV---------------------------------AAGEAGGITQHIGAFEVPAEVLK 48 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc---------------------------------ccccCCCeEEeeccEEEecccCC
Confidence 489999999999999999986210 11123456666665666654
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
+..++++||||+..|...+..++..+|++++|+|+++ +...++.+.+..+...++| +++|+||+|+......
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~-------~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~ 120 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADD-------GVMPQTIEAIKLAKAANVP-FIVALNKIDKPNANPE 120 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCC-------CccHHHHHHHHHHHHcCCC-EEEEEEceecccccHH
Confidence 6789999999999988877778899999999999998 6667788888777778876 8999999999864433
Q ss_pred HHHHHHHHHHHHHH----HcCCccceEEeccccCCCccccc
Q psy3751 483 FYKRIVYAYKKFAE----DIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 483 ~~~~i~~~~~~~~~----~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+. ..+..+.. ..+ ...+++++||++|.|+.++
T Consensus 121 ~~~---~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 121 RVK---NELSELGLQGEDEWG-GDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred HHH---HHHHHhhcccccccc-CcCcEEEeecccCCCHHHH
Confidence 322 22222221 112 2468999999999999984
No 139
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.78 E-value=3.1e-18 Score=174.16 Aligned_cols=171 Identities=22% Similarity=0.198 Sum_probs=131.9
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCC--CCCeeEEEeeCCCCC--hhhHHHHHHHHHHhCCcEEEEecchhh---hhccc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPS--RFPFPMVHIDTGHNF--PEVISFRDNCISKLGETLIVRSVEDSI---MKGTV 111 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~--~~~i~~v~idtg~~~--pet~~~~~~~~~~~gi~i~~~~~~~~~---~~~~~ 111 (967)
+++|++||||||+++++++.+..... +.++.++|+|+|... ++..++++++++++|+++.++.....+ .....
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 80 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEYTDDIEVKK 80 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhcchhhhhhc
Confidence 57899999999999999999976543 457889999999864 678899999999999999998776432 11112
Q ss_pred ccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCce
Q psy3751 112 RLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENI 191 (967)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 191 (967)
......|..|...++..+.+.++++|.+++++||+.||..++..++.+.+....+. .|..| .....+...
T Consensus 81 ~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l~~~~~g~~~~~~------~~~~~----~~~~~~~~~ 150 (185)
T cd01993 81 RGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILRLM------RPGPI----LYLDEGDVT 150 (185)
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHHhcCHHHHc------CCCCc----cccCCCCce
Confidence 23445677788888889999999999999999999999999988877765432211 11111 011223457
Q ss_pred EEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 192 RVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 192 ~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
.++||++|++.||++|++.+++|+.+..
T Consensus 151 iirPL~~~~k~eI~~~~~~~~l~~~~d~ 178 (185)
T cd01993 151 RIRPLVYVREKEIVLYAELNGLPFVEEE 178 (185)
T ss_pred EEeecccCCHHHHHHHHHHcCCCcccCC
Confidence 8999999999999999999999988766
No 140
>KOG0469|consensus
Probab=99.77 E-value=1.5e-18 Score=184.58 Aligned_cols=133 Identities=27% Similarity=0.316 Sum_probs=110.8
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
.+.++++|+.++.|+|||||||...|....|.|. +.+.|. ...+|+.+.|++|||||..+...
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis----------~akaGe-------~Rf~DtRkDEQeR~iTIKStAIS 76 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIIS----------AAKAGE-------TRFTDTRKDEQERGITIKSTAIS 76 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceee----------ecccCC-------ccccccccchhhcceEeeeeeee
Confidence 3567889999999999999999999998777662 122232 23489999999999999876554
Q ss_pred eec----------------CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc
Q psy3751 399 FNT----------------PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL 462 (967)
Q Consensus 399 ~~~----------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~ 462 (967)
+.. ++.-+++||.|||.||..+.-.+++..|++++|||..+ |+.-||...+..+-..
T Consensus 77 l~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~-------GvCVQTETVLrQA~~E 149 (842)
T KOG0469|consen 77 LFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS-------GVCVQTETVLRQAIAE 149 (842)
T ss_pred ehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccC-------ceEechHHHHHHHHHh
Confidence 321 24568999999999999999999999999999999999 9999999999999888
Q ss_pred CCCeEEEEEecCCc
Q psy3751 463 RIKHIIIAVNKMDL 476 (967)
Q Consensus 463 ~~~~iivviNK~D~ 476 (967)
.++| ++++||||.
T Consensus 150 RIkP-vlv~NK~DR 162 (842)
T KOG0469|consen 150 RIKP-VLVMNKMDR 162 (842)
T ss_pred hccc-eEEeehhhH
Confidence 8885 567999995
No 141
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.77 E-value=3.5e-18 Score=174.02 Aligned_cols=169 Identities=18% Similarity=0.173 Sum_probs=129.4
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC--hhhHHHHHHHHHHhCCcEEEEecchhhhhcccccCCC
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF--PEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKP 116 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~--pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~ 116 (967)
+++|++|||+||+++++++.++....+.++.++|+|+|+.. ++..+.++++++.+|++++++..+..... ......
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~--~~~~~~ 78 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALA--KGKKKN 78 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhc--cccCCC
Confidence 57899999999999999999875544567999999999864 56789999999999999998876532211 112233
Q ss_pred CcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeC
Q psy3751 117 NTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPI 196 (967)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl 196 (967)
.+..|..+|+..+.+.++++|.+.+++||+.||..++..++++.+....+. ....|.. ...++...++||
T Consensus 79 ~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l---~~~~~~~-------~~~~~~~iirPL 148 (189)
T TIGR02432 79 LEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETILLRLLRGSGLRGL---SGMKPIR-------ILGNGGQIIRPL 148 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHHcCCCcccc---cCCcccc-------ccCCCCEEECCC
Confidence 445677788888999999999999999999999999988877765532221 1111100 011146789999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 197 SNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 197 ~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
++|+++|||+|++++++|+...+
T Consensus 149 ~~~~k~ei~~~~~~~~lp~~~~~ 171 (189)
T TIGR02432 149 LGISKSEIEEYLKENGLPWFEDE 171 (189)
T ss_pred CCCCHHHHHHHHHHcCCCeeeCC
Confidence 99999999999999999998887
No 142
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.77 E-value=3.5e-18 Score=173.63 Aligned_cols=165 Identities=20% Similarity=0.173 Sum_probs=127.9
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCCh--hhHHHHHHHHHHhCCcEEEEecchhhhhcccccCCC
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFP--EVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKP 116 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~p--et~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~ 116 (967)
+++|++|||+||+++++++.+.....+.++.++|+|+|..+. ++.++++++++.+|++++++..... ......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~ 75 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALA-----PKPGGN 75 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccc-----cCCCCC
Confidence 578999999999999999998865434579999999998764 8999999999999999998722111 112223
Q ss_pred CcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeC
Q psy3751 117 NTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPI 196 (967)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl 196 (967)
.+..|..+++..+.+.++++|++.+++||+.||..++..++++.+....+..... ..........++||
T Consensus 76 ~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~-----------~~~~~~~~~virPl 144 (185)
T cd01992 76 LEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMP-----------ARIPFGGGRLIRPL 144 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCC-----------cccCCCCCeEECCC
Confidence 3455666778889999999999999999999999999888777655432221100 11123446789999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 197 SNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 197 ~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
++|+++|||+|++++|+|+...+
T Consensus 145 ~~~~k~eI~~~~~~~~l~~~~~~ 167 (185)
T cd01992 145 LGITRAEIEAYLRENGLPWWEDP 167 (185)
T ss_pred CCCCHHHHHHHHHHcCCCeEECC
Confidence 99999999999999999988777
No 143
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.77 E-value=2.5e-18 Score=173.31 Aligned_cols=165 Identities=19% Similarity=0.163 Sum_probs=117.1
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCCh--hhHHHHHHHHHHhCCcEEEEecchhhhhcccccCCC
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFP--EVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKP 116 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~p--et~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~ 116 (967)
+++||+||||||++||+++.+.....+.++.++|+|+|+... +..++++++|+.+|+++.+...+.. ......
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~-----~~~~~~ 75 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED-----RKKGSN 75 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH-----CCTTST
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee-----ecccCC
Confidence 478999999999999999999987767789999999998742 3568899999999999999877651 111223
Q ss_pred CcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeC
Q psy3751 117 NTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPI 196 (967)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl 196 (967)
.+..|..+|+..+.+.++++|++.+++||++||..++..|+++.+....+...+. + ... ..+...++||
T Consensus 76 ~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg~~~~~l~~~~---~-~~~-------~~~~~~iRPL 144 (182)
T PF01171_consen 76 IEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLLRGSGLRGLAGMP---P-VSP-------FKGIKLIRPL 144 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT--CCCCC-S----S-EEE-------ETTCEEE-GG
T ss_pred HHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHHHhccchhhcccc---c-ccc-------ccCcccCCcc
Confidence 3445555778889999999999999999999999999999999877654432211 1 111 1236789999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 197 SNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 197 ~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
++.+++|+..|++.+++||....
T Consensus 145 l~~~k~ei~~~~~~~~i~~~~D~ 167 (182)
T PF01171_consen 145 LYVSKDEIRAYAKENGIPYVEDP 167 (182)
T ss_dssp GCS-HHHHHHHHHHTT-SSBS-C
T ss_pred hhCCHHHHHHHHHHCCCcEEECc
Confidence 99999999999999999998765
No 144
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=4.3e-18 Score=197.04 Aligned_cols=247 Identities=19% Similarity=0.188 Sum_probs=155.8
Q ss_pred hhcCCEeecccCCCCCCCCccceeeeEEEeccccccccccccCCcCChHHHHHhhhhhhhhhhcc-cccccccchhhHHh
Q psy3751 227 IKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGA-TRIDDQNSEASMEK 305 (967)
Q Consensus 227 ~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~-~~~~~~~~~~~~~~ 305 (967)
...++.+++++...+....+.......+....+++.+.++.+... .+....+.......+... +...........+.
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~--~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD--EEADAYEFYSLGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc--chhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHH
Confidence 455677888887766666655555555555667888887777432 111222222111111000 00000111111111
Q ss_pred hhcccCcccccccccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhh
Q psy3751 306 RKKTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESE 385 (967)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e 385 (967)
........ .........++|+++|++|+|||||+|+|++....+ ..
T Consensus 157 I~~~~~~~--~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~--------------------------------~~ 202 (435)
T PRK00093 157 ILEELPEE--EEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI--------------------------------VS 202 (435)
T ss_pred HHhhCCcc--ccccccccceEEEEECCCCCCHHHHHHHHhCCCcee--------------------------------ec
Confidence 11111000 001113467999999999999999999999732211 12
Q ss_pred hccceeEeeceeeeecCCceEEEeeChhhH----------HH-HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH
Q psy3751 386 REQGITIDVAYRYFNTPKRKFIIADTPGHE----------QY-TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKR 454 (967)
Q Consensus 386 ~~~g~Ti~~~~~~~~~~~~~~~liDtpG~~----------~~-~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~ 454 (967)
...|+|.+.....+..++..+.++||||+. .| ...++.++..+|++|+|+|+.+ +...|...
T Consensus 203 ~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~-------~~~~~~~~ 275 (435)
T PRK00093 203 DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE-------GITEQDLR 275 (435)
T ss_pred CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC-------CCCHHHHH
Confidence 235778877777777788899999999953 22 2345667899999999999998 78888888
Q ss_pred HHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 455 HSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 455 ~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
.+..+...+.+ +|+|+||+|+.+ +...+++.+++...+.... .++++++||++|.|+.++.+
T Consensus 276 i~~~~~~~~~~-~ivv~NK~Dl~~--~~~~~~~~~~~~~~l~~~~--~~~i~~~SA~~~~gv~~l~~ 337 (435)
T PRK00093 276 IAGLALEAGRA-LVIVVNKWDLVD--EKTMEEFKKELRRRLPFLD--YAPIVFISALTGQGVDKLLE 337 (435)
T ss_pred HHHHHHHcCCc-EEEEEECccCCC--HHHHHHHHHHHHHhccccc--CCCEEEEeCCCCCCHHHHHH
Confidence 88887777766 899999999983 3345556666655554433 36899999999999998754
No 145
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=4.1e-18 Score=183.33 Aligned_cols=147 Identities=23% Similarity=0.259 Sum_probs=95.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
+|+++|++|+|||||+|+|++..-.+ .+... +.|.+........++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~----------vs~~~----------------------~TTr~~i~~i~~~~~~q 49 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI----------TSPKA----------------------QTTRNRISGIHTTGASQ 49 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee----------cCCCC----------------------CcccCcEEEEEEcCCcE
Confidence 58999999999999999999732111 11111 22222111223345668
Q ss_pred EEEeeChhhHH--------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 406 FIIADTPGHEQ--------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 406 ~~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
+.|+||||+.+ +.+.+..++..+|++++|+|+++ ....+ ...+..+...+.| +++|+||+|+.
T Consensus 50 ii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~-------~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~ 120 (270)
T TIGR00436 50 IIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQ-------WNGDG-EFVLTKLQNLKRP-VVLTRNKLDNK 120 (270)
T ss_pred EEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC-------CCchH-HHHHHHHHhcCCC-EEEEEECeeCC
Confidence 99999999532 23445667889999999999987 32222 3334445556665 89999999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+. . ...+.+..+.+..++. +++++||++|.|++++.
T Consensus 121 ~~-~----~~~~~~~~~~~~~~~~--~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 121 FK-D----KLLPLIDKYAILEDFK--DIVPISALTGDNTSFLA 156 (270)
T ss_pred CH-H----HHHHHHHHHHhhcCCC--ceEEEecCCCCCHHHHH
Confidence 42 2 1223333344333432 78999999999999864
No 146
>KOG0464|consensus
Probab=99.76 E-value=3e-19 Score=185.65 Aligned_cols=134 Identities=28% Similarity=0.320 Sum_probs=119.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.+.+||+|+.|.|+||||...++++..|.+ ...|..-+..+++|.+..||+||||++.....|.|
T Consensus 35 akirnigiiahidagktttterily~ag~~---------------~s~g~vddgdtvtdfla~erergitiqsaav~fdw 99 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAI---------------HSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW 99 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhh---------------hcccccCCCchHHHHHHHHHhcCceeeeeeeeccc
Confidence 467899999999999999999999976654 11133445567899999999999999999999999
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~ 478 (967)
+++++++||||||.||.-++.+.++..|+++.|+|++. |+.+||...+..+...++| -++.+||||...
T Consensus 100 kg~rinlidtpghvdf~leverclrvldgavav~dasa-------gve~qtltvwrqadk~~ip-~~~finkmdk~~ 168 (753)
T KOG0464|consen 100 KGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASA-------GVEAQTLTVWRQADKFKIP-AHCFINKMDKLA 168 (753)
T ss_pred ccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccC-------CcccceeeeehhccccCCc-hhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999 9999999999999999998 567799999764
No 147
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=99.76 E-value=4.5e-18 Score=173.53 Aligned_cols=199 Identities=19% Similarity=0.206 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCC-CeeEEEeeCCCCChhhHHHHHHHHHHh-CC-c-
Q psy3751 21 WLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRF-PFPMVHIDTGHNFPEVISFRDNCISKL-GE-T- 96 (967)
Q Consensus 21 ~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~-~i~~v~idtg~~~pet~~~~~~~~~~~-gi-~- 96 (967)
..-+.++++|++.+..+++++|+|||||||.+||||+.+..++.+. ++.|+|+|-.-.|.+|.+++++..+.| ++ +
T Consensus 11 nV~eA~~eRl~~if~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~~~~~dv~~~ 90 (407)
T COG3969 11 NVLEAAIERLEWIFNTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMRESYHDVIET 90 (407)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHHhcccCcccc
Confidence 4567889999999999999999999999999999999998776555 799999999989999999999999875 32 2
Q ss_pred -EEEEec-----ch----hhhh----c--------cccc-----CCCCcccchhhcHHHH----HHHHHH-cCCcEEEEe
Q psy3751 97 -LIVRSV-----ED----SIMK----G--------TVRL-----RKPNTDSRNAAQSITL----LETIKE-FKFDACIGG 144 (967)
Q Consensus 97 -i~~~~~-----~~----~~~~----~--------~~~~-----~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~G 144 (967)
..+.-| .. .+|. + .... ....+.++..+.-+.+ .+-..+ +...++++|
T Consensus 91 ~yWvcLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~LvG 170 (407)
T COG3969 91 FYWVCLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLVG 170 (407)
T ss_pred ceEEEeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhccCCceEEEEe
Confidence 111111 00 0010 0 0000 0001111222222222 222222 344899999
Q ss_pred ccchhhHhhhccccccccccCCCCCCCCCCccccccccccC-CCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcccccc
Q psy3751 145 ARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRV-HPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHK 223 (967)
Q Consensus 145 ~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~ 223 (967)
+|+|||.+|... +.+ +.... + ..|+ .+.+.. +.+....+.||+||..+|||.|-.+++.+||+||
T Consensus 171 iRadESlNRf~a-i~~-~~k~~-~----~~~~---pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN~LY---- 236 (407)
T COG3969 171 IRADESLNRFNA-IAR-KEKLR-F----ADDK---PWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLY---- 236 (407)
T ss_pred ecchhhHHHHHH-HHH-hhhcc-c----CCCC---CceeeecCCCceEEEEecccchHHHHHHHHHhcCCcccHHH----
Confidence 999999999653 111 11000 0 0011 122333 3455788999999999999999999999999999
Q ss_pred chhhhcCCEe
Q psy3751 224 RKIIKRKGLL 233 (967)
Q Consensus 224 ~~~~~~~~~l 233 (967)
--+.++++.+
T Consensus 237 DlmYqAGvp~ 246 (407)
T COG3969 237 DLMYQAGVPL 246 (407)
T ss_pred HHHHHcCCCh
Confidence 3455555533
No 148
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=9.6e-18 Score=181.88 Aligned_cols=144 Identities=24% Similarity=0.319 Sum_probs=115.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
..|+|+|.||+|||||+|+|++..-.+. +-..|+|.|..+...++.++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV--------------------------------~D~pGvTRDr~y~~~~~~~~ 51 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV--------------------------------SDTPGVTRDRIYGDAEWLGR 51 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe--------------------------------ecCCCCccCCccceeEEcCc
Confidence 5699999999999999999998433321 22368999999999999999
Q ss_pred eEEEeeChhhH---------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 405 KFIIADTPGHE---------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 405 ~~~liDtpG~~---------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
.+.+|||+|.. .....+..++..||++|||||+.. |+.++..+....++..+.| +|+|+||+|
T Consensus 52 ~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~-------Git~~D~~ia~~Lr~~~kp-viLvvNK~D 123 (444)
T COG1160 52 EFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGRE-------GITPADEEIAKILRRSKKP-VILVVNKID 123 (444)
T ss_pred eEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCC-------CCCHHHHHHHHHHHhcCCC-EEEEEEccc
Confidence 99999999943 234556678899999999999999 9999999999999865555 999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.... ..-+-++|+. .++||||..|.|+.+|
T Consensus 124 ~~~~e~~---------~~efyslG~g--~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 124 NLKAEEL---------AYEFYSLGFG--EPVPISAEHGRGIGDL 156 (444)
T ss_pred Cchhhhh---------HHHHHhcCCC--CceEeehhhccCHHHH
Confidence 8732211 1123466775 5699999999999985
No 149
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.75 E-value=1e-17 Score=178.12 Aligned_cols=173 Identities=20% Similarity=0.218 Sum_probs=128.5
Q ss_pred HHHcCCCcEEEEecChhHHHHHHHHHHhcCCC--CCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchh-hhhc
Q psy3751 33 VSAECNNPVLLFSGGKDSVVLLRLAEKAFRPS--RFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDS-IMKG 109 (967)
Q Consensus 33 ~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~--~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~-~~~~ 109 (967)
++...++++|++|||+||++|||++.+..... +.++.++|+|+|... ...++++++|+++|++++++..+.. ....
T Consensus 25 li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~-~~~~~~~~~~~~lgI~~~v~~~~~~~~~~~ 103 (258)
T PRK10696 25 MIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPG-FPEHVLPEYLESLGVPYHIEEQDTYSIVKE 103 (258)
T ss_pred CCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCC-CCHHHHHHHHHHhCCCEEEEEecchhhhhh
Confidence 45556889999999999999999998865432 346899999999752 2335789999999999998865421 1111
Q ss_pred ccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCC
Q psy3751 110 TVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGE 189 (967)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 189 (967)
....+...|..|..+|+..+.+.++++|.+.+++||+.||..++..++++.+..- ..+.|... ...+.
T Consensus 104 ~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~l------~~m~~~~~------~~~~~ 171 (258)
T PRK10696 104 KIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGKL------KAMPPKLL------SDDGK 171 (258)
T ss_pred hhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCcc------cccCCeee------cCCCc
Confidence 1112334577788889999999999999999999999999999988888775321 11222110 11234
Q ss_pred ceEEeeCCCCcHHHHHHHHHHcCCCCCCc
Q psy3751 190 NIRVFPISNWTELDIWQYIEREKIILPSL 218 (967)
Q Consensus 190 ~~~i~Pl~~wt~~dV~~yi~~~~lp~~~l 218 (967)
...++||++++++||+.|+..+++|+.+.
T Consensus 172 i~iiRPLl~~~k~eI~~y~~~~~lp~~~~ 200 (258)
T PRK10696 172 HIVIRPLAYVAEKDIIKFAEAKEFPIIPC 200 (258)
T ss_pred eeEEecCccCCHHHHHHHHHHcCCCEeeC
Confidence 56899999999999999999999998643
No 150
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.74 E-value=2.7e-17 Score=177.01 Aligned_cols=164 Identities=21% Similarity=0.251 Sum_probs=126.5
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++||+|+|||||+++|++..+.+... |...+-.+++|..++|+++|+|+......+.+++.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~---------------g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~ 65 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRL---------------GSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHK 65 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccC---------------CeecCCcccCCCCHHHHhhcccccceeEEEEECCEE
Confidence 68999999999999999999866554111 111123466899999999999999988889999999
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYK 485 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~ 485 (967)
+++||||||.+|...+..++..+|++++|+|++. +...++...+..+...++| +++|+||+|+...+ +.
T Consensus 66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~-------g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~~~---~~ 134 (268)
T cd04170 66 INLIDTPGYADFVGETRAALRAADAALVVVSAQS-------GVEVGTEKLWEFADEAGIP-RIIFINKMDRERAD---FD 134 (268)
T ss_pred EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCC-------CCCHHHHHHHHHHHHcCCC-EEEEEECCccCCCC---HH
Confidence 9999999999999999999999999999999998 7778888888888888887 67799999998653 33
Q ss_pred HHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 486 RIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 486 ~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+++++. ++.. +-.+.+...+|.|+..+
T Consensus 135 ~~~~~l~~~---~~~~-~~~~~ip~~~~~~~~~~ 164 (268)
T cd04170 135 KTLAALQEA---FGRP-VVPLQLPIGEGDDFKGV 164 (268)
T ss_pred HHHHHHHHH---hCCC-eEEEEecccCCCceeEE
Confidence 444444443 3431 11233456677766544
No 151
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=5.7e-18 Score=187.04 Aligned_cols=151 Identities=26% Similarity=0.325 Sum_probs=101.1
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
....+|+++|++|+|||||+|+|++..-. .+.+ ..+.|.+.....+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~--------------------------ivs~------k~~tTr~~~~~~~~~ 97 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS--------------------------IVTP------KVQTTRSIITGIITL 97 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee--------------------------eccC------CCCCccCcEEEEEEe
Confidence 45679999999999999999999872111 0111 123333333334566
Q ss_pred CCceEEEeeChhhH--------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 402 PKRKFIIADTPGHE--------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 402 ~~~~~~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
++.++.||||||.. .+.+.....+..||++++|+|+.+ ++.......+..+...+.+ .|+|+||
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-------s~~~~~~~il~~l~~~~~p-~IlViNK 169 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-------SFDDITHNILDKLRSLNIV-PIFLLNK 169 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-------CCCHHHHHHHHHHHhcCCC-EEEEEEh
Confidence 77899999999963 233444456789999999999887 5555555555556666766 5678999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+|+.+. ... ++.+.++..+ ...+++|+||++|.|++++.
T Consensus 170 iDl~~~---~~~----~~~~~l~~~~-~~~~i~~iSAktg~gv~eL~ 208 (339)
T PRK15494 170 IDIESK---YLN----DIKAFLTENH-PDSLLFPISALSGKNIDGLL 208 (339)
T ss_pred hcCccc---cHH----HHHHHHHhcC-CCcEEEEEeccCccCHHHHH
Confidence 998742 122 2333333332 12478999999999999854
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=2.8e-17 Score=190.62 Aligned_cols=249 Identities=16% Similarity=0.163 Sum_probs=145.9
Q ss_pred hhcCCEeecccCCCCCCCCccceeeeEEEeccccccccccccCCcCChHHHHHhhhhhhhhhhcc-cccccccchhhHHh
Q psy3751 227 IKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGA-TRIDDQNSEASMEK 305 (967)
Q Consensus 227 ~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~-~~~~~~~~~~~~~~ 305 (967)
...++.+++++...+....+.......+....+|+.+-++.+......+ ..+.......+... +...........+.
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--~~~~~~~g~~~~~~iSA~~g~gi~eL~~~ 193 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--AAALWSLGLGEPHPVSALHGRGVGDLLDA 193 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--hHHHHhcCCCCeEEEEcCCCCCcHHHHHH
Confidence 4556778888876665555544444455455678888888775322211 11111111111100 00111111111111
Q ss_pred hhcccCcccccccccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhh
Q psy3751 306 RKKTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESE 385 (967)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e 385 (967)
....- .............++|+++|++|+|||||+|+|++....+ .+
T Consensus 194 i~~~l-~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~--------------------------------~s 240 (472)
T PRK03003 194 VLAAL-PEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSV--------------------------------VD 240 (472)
T ss_pred HHhhc-ccccccccccccceEEEEECCCCCCHHHHHHHHhCCCccc--------------------------------cc
Confidence 11100 0000000112356899999999999999999999732111 11
Q ss_pred hccceeEeeceeeeecCCceEEEeeChhhH---------HHHHH--HHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH
Q psy3751 386 REQGITIDVAYRYFNTPKRKFIIADTPGHE---------QYTRN--MITGASTADAVIILIDASKIKFNPSVNLLTQTKR 454 (967)
Q Consensus 386 ~~~g~Ti~~~~~~~~~~~~~~~liDtpG~~---------~~~~~--~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~ 454 (967)
...|+|.+.....+..++..+.|+||||.. .+... ....+..+|++|+|+|+++ +...+...
T Consensus 241 ~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~-------~~s~~~~~ 313 (472)
T PRK03003 241 DVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE-------PISEQDQR 313 (472)
T ss_pred CCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC-------CCCHHHHH
Confidence 235667776666677788889999999942 23222 2345689999999999998 66666666
Q ss_pred HHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccC
Q psy3751 455 HSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNN 522 (967)
Q Consensus 455 ~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~ 522 (967)
.+..+...+.+ +|+|+||+|+.+.. ....+..++...+.... ..+++++||++|.|++++.+.
T Consensus 314 ~~~~~~~~~~p-iIiV~NK~Dl~~~~--~~~~~~~~i~~~l~~~~--~~~~~~~SAk~g~gv~~lf~~ 376 (472)
T PRK03003 314 VLSMVIEAGRA-LVLAFNKWDLVDED--RRYYLEREIDRELAQVP--WAPRVNISAKTGRAVDKLVPA 376 (472)
T ss_pred HHHHHHHcCCC-EEEEEECcccCChh--HHHHHHHHHHHhcccCC--CCCEEEEECCCCCCHHHHHHH
Confidence 66666666766 99999999998532 12233333433333322 358899999999999997643
No 153
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.73 E-value=1.8e-17 Score=149.86 Aligned_cols=102 Identities=39% Similarity=0.596 Sum_probs=96.1
Q ss_pred ccceeEEEEEEeccccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCc
Q psy3751 640 SLRSINANLCWLSEESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNI 719 (967)
Q Consensus 640 ~~~~f~a~i~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~ 719 (967)
.+.+|+|+|.||+..|+.+|++|.+|+|+.+++|+|.+|.+++|.++++..+|.+|..||.|.|+|.+++|+++|+|+++
T Consensus 2 ~~~~f~a~i~~l~~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~i~~~~pi~~d~~~~~ 81 (103)
T cd04095 2 VSDQFAATLVWMDEEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVELSLSKPLAFDPYREN 81 (103)
T ss_pred ccceeeEEEEEecCcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEEEEeCCccEecchhhC
Confidence 46789999999998899999999999999999999999999999999877789999999999999999999999999999
Q ss_pred cCCccceeecccccccceEEEE
Q psy3751 720 RSTGSFILIDEITFQTVAAVYI 741 (967)
Q Consensus 720 ~~~grfil~d~~~~~~~~~~~~ 741 (967)
+.+|||+|+|+.++.|+|.|.+
T Consensus 82 ~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 82 RATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred CCcceEEEEECCCCcEEEEEeC
Confidence 9999999999888999987753
No 154
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.1e-17 Score=177.83 Aligned_cols=167 Identities=23% Similarity=0.236 Sum_probs=133.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC--hhhHHHHHHHHHHhCCcEEEEecchhhhhcccccC
Q psy3751 37 CNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF--PEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLR 114 (967)
Q Consensus 37 ~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~--pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~ 114 (967)
.++++||+||||||+++|+++.+.... .++.++|+|+|+.. ....++++++|+.+++++++.+........... +
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~ 97 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDDLGRETLD-G 97 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEeeccccccC-C
Confidence 478999999999999999999998653 68899999999975 567789999999999999988776654433222 4
Q ss_pred CCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEe
Q psy3751 115 KPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVF 194 (967)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~ 194 (967)
.+.|..|..+|+..+.+.+++.|++.++|||++||..++..|+++.+....+.... .+. ....++...++
T Consensus 98 ~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~---~~~-------~~~~~~~~~iR 167 (298)
T COG0037 98 KSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRGLRGM---PPK-------RPFEGGLLIIR 167 (298)
T ss_pred CChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHHHHHcCcHhhHHhhC---Ccc-------cccCCCCeeee
Confidence 56788999999999999999999999999999999999999999987764322111 110 00111126899
Q ss_pred eCCCCcHHHHHHHHHHcCCCCC
Q psy3751 195 PISNWTELDIWQYIEREKIILP 216 (967)
Q Consensus 195 Pl~~wt~~dV~~yi~~~~lp~~ 216 (967)
||+.+++.||..|+..+++||.
T Consensus 168 PL~~~~~~ei~~~~~~~~l~~~ 189 (298)
T COG0037 168 PLLYVREKEIELYAKEKGLPYI 189 (298)
T ss_pred ecccCCHHHHHHHHHHcCCCEe
Confidence 9999999999999999999754
No 155
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.71 E-value=5.1e-17 Score=162.32 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=101.9
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++|++|+|||||+++|++..... .+ ... .+...|+......+.+++..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~--------------~~-------------~~~--~~~~~t~~~~~~~~~~~~~~ 51 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY--------------KG-------------LPP--SKITPTVGLNIGTIEVGNAR 51 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc--------------cC-------------Ccc--cccCCccccceEEEEECCEE
Confidence 58999999999999999998621110 00 000 11123444444556667889
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH----HcCCCeEEEEEecCCccCcCH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH----LLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~----~~~~~~iivviNK~D~~~~~~ 481 (967)
+.++||||+.+|...+...+..+|++++|+|+.+.. ........+.... ..++| +++|+||+|+.+...
T Consensus 52 ~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~------~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~~ 124 (167)
T cd04160 52 LKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE------RFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALS 124 (167)
T ss_pred EEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHH------HHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCCC
Confidence 999999999999888888889999999999998721 1112222222211 23455 999999999865321
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..++.+.+....+..+...++++++||++|.|++++
T Consensus 125 --~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 125 --VEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred --HHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 233333333333334445678999999999999874
No 156
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=2.1e-16 Score=158.73 Aligned_cols=154 Identities=25% Similarity=0.309 Sum_probs=105.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|++|+|||||+++|++..... .+...+.|.+.....+..++
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 49 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI--------------------------------VSDIAGTTRDSIDVPFEYDG 49 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee--------------------------------ccCCCCCccCceeeEEEECC
Confidence 5789999999999999999998732111 01113444444444566677
Q ss_pred ceEEEeeChhhHH----------HH-HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEe
Q psy3751 404 RKFIIADTPGHEQ----------YT-RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472 (967)
Q Consensus 404 ~~~~liDtpG~~~----------~~-~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviN 472 (967)
..+.+|||||+.+ |. ..+...+..+|++++|+|+.. ....+....+..+...+.+ +++++|
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~-------~~~~~~~~~~~~~~~~~~~-~iiv~n 121 (174)
T cd01895 50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATE-------GITEQDLRIAGLILEEGKA-LVIVVN 121 (174)
T ss_pred eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCC-------CcchhHHHHHHHHHhcCCC-EEEEEe
Confidence 7899999999532 21 234556689999999999988 4444444555555555655 899999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+.+..+...+.+.+.++..+... ...+++++||++|.|++++
T Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~ 166 (174)
T cd01895 122 KWDLVEKDSKTMKEFKKEIRRKLPFL--DYAPIVFISALTGQGVDKL 166 (174)
T ss_pred ccccCCccHHHHHHHHHHHHhhcccc--cCCceEEEeccCCCCHHHH
Confidence 99998754344455555554443322 2358999999999999884
No 157
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.69 E-value=5.9e-16 Score=156.28 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=105.5
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
.......+|+++|++|+|||||+|+|++..... ......|.|.+..+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~-------------------------------~~~~~~~~t~~~~~~~ 61 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLA-------------------------------RTSKTPGRTQLINFFE 61 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-------------------------------cccCCCCcceEEEEEE
Confidence 344677899999999999999999998732100 0001124455444333
Q ss_pred eecCCceEEEeeChhh----------HHHHHHH---HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCC
Q psy3751 399 FNTPKRKFIIADTPGH----------EQYTRNM---ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIK 465 (967)
Q Consensus 399 ~~~~~~~~~liDtpG~----------~~~~~~~---~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~ 465 (967)
. + ..+.++||||+ .+|...+ ++....+|++++|+|++. +...+..+.+..+...+.+
T Consensus 62 ~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~-------~~~~~~~~~~~~~~~~~~p 131 (179)
T TIGR03598 62 V--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH-------PLKELDLEMLEWLRERGIP 131 (179)
T ss_pred e--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC-------CCCHHHHHHHHHHHHcCCC
Confidence 2 2 37999999994 2333222 233345789999999988 6667777777777777776
Q ss_pred eEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccc
Q psy3751 466 HIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNII 517 (967)
Q Consensus 466 ~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~ 517 (967)
+++|+||+|+.+. ...+...+++++.++..+. +.+++++||++|+|++
T Consensus 132 -viiv~nK~D~~~~--~~~~~~~~~i~~~l~~~~~-~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 132 -VLIVLTKADKLKK--SELNKQLKKIKKALKKDAD-DPSVQLFSSLKKTGID 179 (179)
T ss_pred -EEEEEECcccCCH--HHHHHHHHHHHHHHhhccC-CCceEEEECCCCCCCC
Confidence 8999999999753 3345566667777766542 3589999999999974
No 158
>PRK00089 era GTPase Era; Reviewed
Probab=99.68 E-value=3.1e-16 Score=171.37 Aligned_cols=151 Identities=22% Similarity=0.295 Sum_probs=98.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.-.|+++|.+|||||||+|+|++..-.+ +.+... .|.+........++
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~--------------------------vs~~~~------tt~~~i~~i~~~~~ 52 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI--------------------------VSPKPQ------TTRHRIRGIVTEDD 52 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee--------------------------cCCCCC------cccccEEEEEEcCC
Confidence 3569999999999999999999732111 111111 11111111133355
Q ss_pred ceEEEeeChhhH--------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 404 RKFIIADTPGHE--------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 404 ~~~~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
.++.++||||.. .+...+...+..+|++++|+|+++ ++.....+.+..+...+.| +++|+||+|
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~-------~~~~~~~~i~~~l~~~~~p-vilVlNKiD 124 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADE-------KIGPGDEFILEKLKKVKTP-VILVLNKID 124 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCC-------CCChhHHHHHHHHhhcCCC-EEEEEECCc
Confidence 789999999942 234455667789999999999987 4555555555555555555 899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+....+ . +...++.+.+..++ .+++++||++|.|++++.
T Consensus 125 l~~~~~-~---l~~~~~~l~~~~~~--~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 125 LVKDKE-E---LLPLLEELSELMDF--AEIVPISALKGDNVDELL 163 (292)
T ss_pred CCCCHH-H---HHHHHHHHHhhCCC--CeEEEecCCCCCCHHHHH
Confidence 984222 2 22233333333333 478999999999999853
No 159
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=4.4e-16 Score=155.20 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=99.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+||+++|++|+|||||+++|... . + ..+....++.+.....+..+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~--~----------------------~---------~~~~~~t~~~~~~~~~~~~~ 48 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSG--T----------------------F---------SERQGNTIGVDFTMKTLEIE 48 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--C----------------------C---------cccCCCccceEEEEEEEEEC
Confidence 3589999999999999999999751 0 0 01111122233333444444
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCcc
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLI 477 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~ 477 (967)
+ ..+.++||||+++|.......++.+|++++|+|+++.. .+ ......+..... .++| +|+|+||+|+.
T Consensus 49 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~-----s~-~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~ 121 (165)
T cd01864 49 GKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS-----SF-ESVPHWIEEVEKYGASNVV-LLLIGNKCDLE 121 (165)
T ss_pred CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH-----HH-HhHHHHHHHHHHhCCCCCc-EEEEEECcccc
Confidence 4 46889999999999888888889999999999998821 01 111222222222 2344 89999999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+. ..++...+.+..+. ..++++||++|.|+.++
T Consensus 122 ~~~~~----~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 122 EQREV----LFEEACTLAEKNGM--LAVLETSAKESQNVEEA 157 (165)
T ss_pred ccccc----CHHHHHHHHHHcCC--cEEEEEECCCCCCHHHH
Confidence 54321 12233445555543 36899999999999984
No 160
>KOG0468|consensus
Probab=99.67 E-value=1.9e-15 Score=166.45 Aligned_cols=134 Identities=22% Similarity=0.305 Sum_probs=106.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....+||+++||-.||||+|+..|..++.-- +.+ +.. . -..++|.+..|++||++|...-..+
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~-------~~~----~~e--~---~lrytD~l~~E~eRg~sIK~~p~Tl 187 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPD-------FSK----NTE--A---DLRYTDTLFYEQERGCSIKSTPVTL 187 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecccc-------ccc----ccc--c---cccccccchhhHhcCceEeecceEE
Confidence 45577899999999999999999998754310 000 000 0 1135799999999999998765443
Q ss_pred ec-----CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 400 NT-----PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 400 ~~-----~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
-. ..+-++++|||||-+|..++..+++.+|++++|||+.+ |++-+|.+.+..+-+-..+ ++||+||+
T Consensus 188 ~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-------GVmlntEr~ikhaiq~~~~-i~vviNKi 259 (971)
T KOG0468|consen 188 VLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-------GVMLNTERIIKHAIQNRLP-IVVVINKV 259 (971)
T ss_pred EEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-------CceeeHHHHHHHHHhccCc-EEEEEehh
Confidence 32 34668899999999999999999999999999999999 9999999888887776766 99999999
Q ss_pred Ccc
Q psy3751 475 DLI 477 (967)
Q Consensus 475 D~~ 477 (967)
|+.
T Consensus 260 DRL 262 (971)
T KOG0468|consen 260 DRL 262 (971)
T ss_pred HHH
Confidence 964
No 161
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.67 E-value=2.4e-16 Score=143.06 Aligned_cols=100 Identities=24% Similarity=0.280 Sum_probs=92.6
Q ss_pred ccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecCceeeccc
Q psy3751 640 SLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPISVDSY 716 (967)
Q Consensus 640 ~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~pi~~~~~ 716 (967)
.+++|+|+++||++ .||.+|++|++|+|+.+++|+|.+|.+++|.++++.. +|+.|++||.+.|+|.+++|+++|+|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~e~~ 81 (104)
T cd03705 2 VAESFTAQVIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVVETF 81 (104)
T ss_pred cccEEEEEEEEECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEEEEc
Confidence 46889999999998 9999999999999999999999999999999888754 68999999999999999999999999
Q ss_pred cCccCCccceeecccccccceEEEE
Q psy3751 717 DNIRSTGSFILIDEITFQTVAAVYI 741 (967)
Q Consensus 717 ~~~~~~grfil~d~~~~~~~~~~~~ 741 (967)
++++.+|||+||| ++.|+|.|.+
T Consensus 82 ~~~~~lgrf~lrd--~~~Tva~G~v 104 (104)
T cd03705 82 SEYPPLGRFAVRD--MGQTVAVGIV 104 (104)
T ss_pred ccCCCccCEEEEe--CCCEEEEEEC
Confidence 9999999999998 5888887753
No 162
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=5.5e-16 Score=188.21 Aligned_cols=250 Identities=16% Similarity=0.158 Sum_probs=149.9
Q ss_pred hhhcCCEeecccCCCCCCCCccceeeeEEEeccccccccccccCCcCChHHHHHhhhhhhhhhhcc-cccccccchhhHH
Q psy3751 226 IIKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGA-TRIDDQNSEASME 304 (967)
Q Consensus 226 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~-~~~~~~~~~~~~~ 304 (967)
+...++.++++|...+..+.+......+|....+++.+-++.+..... ....+.......+... +...........+
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE--YDAAEFWKLGLGEPYPISAMHGRGVGDLLD 429 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch--hhHHHHHHcCCCCeEEEECCCCCCchHHHH
Confidence 345677888888877666666655566666678888888888854321 1112221111111100 0011111111111
Q ss_pred hhh-cccCcccccccccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCch
Q psy3751 305 KRK-KTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383 (967)
Q Consensus 305 ~~~-~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 383 (967)
... .-...+...........++|+++|++|+|||||+|+|++....+
T Consensus 430 ~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~-------------------------------- 477 (712)
T PRK09518 430 EALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAV-------------------------------- 477 (712)
T ss_pred HHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccc--------------------------------
Confidence 111 10000000000112356899999999999999999999732211
Q ss_pred hhhccceeEeeceeeeecCCceEEEeeChhhH---------HHHHH--HHhhcccCCEEEEEEeCCCCCCCCCCCchhhH
Q psy3751 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHE---------QYTRN--MITGASTADAVIILIDASKIKFNPSVNLLTQT 452 (967)
Q Consensus 384 ~e~~~g~Ti~~~~~~~~~~~~~~~liDtpG~~---------~~~~~--~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t 452 (967)
.....|+|.+.....+..++..+.+|||||+. .+... ...++..+|++++|+|+++ +...+.
T Consensus 478 v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~-------~~s~~~ 550 (712)
T PRK09518 478 VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ-------PISEQD 550 (712)
T ss_pred cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC-------CCCHHH
Confidence 01124666666656677788889999999942 23322 2455788999999999998 777777
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 453 KRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 453 ~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
...+..+...+.+ +|+|+||+|+.+.. ..+.+.+.+...+... ...+++++||++|.|++++.+
T Consensus 551 ~~i~~~~~~~~~p-iIiV~NK~DL~~~~--~~~~~~~~~~~~l~~~--~~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 551 LKVMSMAVDAGRA-LVLVFNKWDLMDEF--RRQRLERLWKTEFDRV--TWARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred HHHHHHHHHcCCC-EEEEEEchhcCChh--HHHHHHHHHHHhccCC--CCCCEEEEECCCCCCHHHHHH
Confidence 7777666666766 99999999998532 2233333333332222 235789999999999998764
No 163
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.66 E-value=6.3e-16 Score=141.12 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=93.9
Q ss_pred ccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCcc--CCCccccCCCEEEEEEeecCceeeccc
Q psy3751 640 SLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKW--CPPKLLDLNDIGCVTINIYEPISVDSY 716 (967)
Q Consensus 640 ~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~--~~~~~l~~g~~a~v~l~l~~pi~~~~~ 716 (967)
.+++|+|+++|+++ .||.+|++|++|+|+..++|+|.+|.+++|.++++. .+|++|++||.|.|+|.+++|+++|+|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 81 (107)
T cd04093 2 SSTRFEARILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLELF 81 (107)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence 46889999999984 899999999999999999999999999999988874 368999999999999999999999999
Q ss_pred cCccCCccceeecccccccceEEEEEe
Q psy3751 717 DNIRSTGSFILIDEITFQTVAAVYIIG 743 (967)
Q Consensus 717 ~~~~~~grfil~d~~~~~~~~~~~~vg 743 (967)
.+++.+|||+||+ ++.|+|.|.+..
T Consensus 82 ~~~~~~Grfilr~--~~~Tva~G~I~~ 106 (107)
T cd04093 82 KDNKELGRVVLRR--DGETIAAGLVTE 106 (107)
T ss_pred ccCCCcceEEEEc--CCCEEEEEEEEe
Confidence 9999999999976 689999988754
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=5.3e-16 Score=153.09 Aligned_cols=141 Identities=27% Similarity=0.302 Sum_probs=100.5
Q ss_pred EEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceEE
Q psy3751 328 ITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFI 407 (967)
Q Consensus 328 ~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 407 (967)
+++|++|+|||||+++|++.... ..+...++|.+........++..+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~--------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 48 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA--------------------------------IVEDTPGVTRDRIYGEAEWGGREFI 48 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE--------------------------------eecCCCCceeCceeEEEEECCeEEE
Confidence 57999999999999999862100 0111235566666666677778899
Q ss_pred EeeChhhHHHH--------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 408 IADTPGHEQYT--------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 408 liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++||||+.++. ......+..+|++++|+|+.+ +......+....++..+.+ +++|+||+|+.+.
T Consensus 49 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~-------~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~ 120 (157)
T cd01894 49 LIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGRE-------GLTPADEEIAKYLRKSKKP-VILVVNKVDNIKE 120 (157)
T ss_pred EEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccc-------cCCccHHHHHHHHHhcCCC-EEEEEECcccCCh
Confidence 99999987643 244566788999999999987 5545555666666666765 9999999999864
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... ...+..++.. +++++|+++|.|++++
T Consensus 121 ~~~---------~~~~~~~~~~--~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 121 EDE---------AAEFYSLGFG--EPIPISAEHGRGIGDL 149 (157)
T ss_pred HHH---------HHHHHhcCCC--CeEEEecccCCCHHHH
Confidence 321 1123344442 6799999999999984
No 165
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.64 E-value=8e-16 Score=169.97 Aligned_cols=147 Identities=21% Similarity=0.251 Sum_probs=97.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....++|+++|++|+|||||+|+|++... + .+...+.|.|+....+
T Consensus 185 ~~~~~~~ValvG~~NvGKSSLln~L~~~~~-~--------------------------------v~~~~~tT~d~~~~~i 231 (351)
T TIGR03156 185 KRADVPTVALVGYTNAGKSTLFNALTGADV-Y--------------------------------AADQLFATLDPTTRRL 231 (351)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCce-e--------------------------------eccCCccccCCEEEEE
Confidence 345668999999999999999999997210 0 0112355666666666
Q ss_pred ec-CCceEEEeeChhh---------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeE
Q psy3751 400 NT-PKRKFIIADTPGH---------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHI 467 (967)
Q Consensus 400 ~~-~~~~~~liDtpG~---------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~i 467 (967)
.. ++..+.|+||||. +.| +.+...+..||++++|+|++++. ...+.......+..++ -.++
T Consensus 232 ~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~~~~ADlil~VvD~s~~~------~~~~~~~~~~~L~~l~~~~~pi 304 (351)
T TIGR03156 232 DLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEEVREADLLLHVVDASDPD------REEQIEAVEKVLEELGAEDIPQ 304 (351)
T ss_pred EeCCCceEEEEecCcccccCCHHHHHHH-HHHHHHHHhCCEEEEEEECCCCc------hHHHHHHHHHHHHHhccCCCCE
Confidence 66 4678999999996 223 34555678999999999998721 1122222223444443 2458
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+||+|+.+..+ +. .... + ..+++++||++|.|++++
T Consensus 305 IlV~NK~Dl~~~~~-----v~----~~~~--~--~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 305 LLVYNKIDLLDEPR-----IE----RLEE--G--YPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred EEEEEeecCCChHh-----HH----HHHh--C--CCCEEEEEccCCCCHHHH
Confidence 99999999975211 11 1111 1 136899999999999984
No 166
>COG2262 HflX GTPases [General function prediction only]
Probab=99.63 E-value=1.1e-15 Score=163.22 Aligned_cols=158 Identities=23% Similarity=0.254 Sum_probs=113.0
Q ss_pred CcccccccccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccce
Q psy3751 311 APEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGI 390 (967)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~ 390 (967)
.++..+..+...+...|+++|++|||||||+|+|++..-.. +...-.
T Consensus 179 ~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~---------------------------------~d~LFA 225 (411)
T COG2262 179 AREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYV---------------------------------ADQLFA 225 (411)
T ss_pred HHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeec---------------------------------cccccc
Confidence 33344445567788999999999999999999999632211 111234
Q ss_pred eEeeceeeeecC-CceEEEeeChhhH--------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH
Q psy3751 391 TIDVAYRYFNTP-KRKFIIADTPGHE--------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL 461 (967)
Q Consensus 391 Ti~~~~~~~~~~-~~~~~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~ 461 (967)
|.|.+.+.+... ++++.+.||-|+- .-++.++.....||++++|||++++ .+..+.......+..
T Consensus 226 TLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp------~~~~~~~~v~~vL~e 299 (411)
T COG2262 226 TLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDP------EILEKLEAVEDVLAE 299 (411)
T ss_pred cccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCCh------hHHHHHHHHHHHHHH
Confidence 777777778777 5899999999932 3456677888999999999999984 455566666667777
Q ss_pred cCC--CeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 462 LRI--KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 462 ~~~--~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|. +|+|+|+||+|++.... ... .+.... + +.+++||++|+|++.|
T Consensus 300 l~~~~~p~i~v~NKiD~~~~~~-----~~~----~~~~~~--~-~~v~iSA~~~~gl~~L 347 (411)
T COG2262 300 IGADEIPIILVLNKIDLLEDEE-----ILA----ELERGS--P-NPVFISAKTGEGLDLL 347 (411)
T ss_pred cCCCCCCEEEEEecccccCchh-----hhh----hhhhcC--C-CeEEEEeccCcCHHHH
Confidence 654 56999999999886432 111 111111 1 5799999999999984
No 167
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.63 E-value=6.7e-15 Score=145.93 Aligned_cols=144 Identities=23% Similarity=0.279 Sum_probs=93.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhc--cceeEeeceeeeecC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESERE--QGITIDVAYRYFNTP 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~--~g~Ti~~~~~~~~~~ 402 (967)
+||+++|.+|+|||||+++|+... + ..+.. .+.++......+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~------------------------~---------~~~~~~~~~~~~~~~~~~~~~~ 47 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG------------------------Y---------EPQQLSTYALTLYKHNAKFEGK 47 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------------------------C---------CCCcCCceeeEEEEEEEEECCE
Confidence 479999999999999999998621 1 00011 122221111122223
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-HHHHHHHHHHc--CCCeEEEEEecCCccCc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-TKRHSIIAHLL--RIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t~~~~~~~~~~--~~~~iivviNK~D~~~~ 479 (967)
...+.+|||||++.|.......++.+|++|+|+|+++ ....+ ..+.+...+.. ++ ++++|+||+|+...
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~-p~ivv~nK~Dl~~~ 119 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR-------KITYKNLSKWYEELREYRPEI-PCIVVANKIDLDPS 119 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhCCCC-cEEEEEECccCchh
Confidence 3567899999999998888888899999999999987 22211 22333333332 34 49999999998532
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. ..+...+.+..+ .+++++||++|.|++++
T Consensus 120 ~-------~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 120 V-------TQKKFNFAEKHN---LPLYYVSAADGTNVVKL 149 (161)
T ss_pred H-------HHHHHHHHHHcC---CeEEEEeCCCCCCHHHH
Confidence 1 112223444444 38899999999999985
No 168
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.63 E-value=1.5e-15 Score=138.53 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=91.9
Q ss_pred ccceeEEEEEEecc--ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecCceeecc
Q psy3751 640 SLRSINANLCWLSE--ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPISVDS 715 (967)
Q Consensus 640 ~~~~f~a~i~~~~~--~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~pi~~~~ 715 (967)
.+++|+|+|+||++ .+|.+||++++|+|+.+++|+|.+|.+++|.++++.. +|++|++||.+.|+|++++|+++|+
T Consensus 2 ~~~~F~A~i~vl~~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e~ 81 (108)
T cd03704 2 VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEK 81 (108)
T ss_pred cccEEEEEEEEEeCCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEEE
Confidence 46789999999995 4589999999999999999999999999999877543 7899999999999999999999999
Q ss_pred ccCccCCccceeecccccccceEEEEE
Q psy3751 716 YDNIRSTGSFILIDEITFQTVAAVYII 742 (967)
Q Consensus 716 ~~~~~~~grfil~d~~~~~~~~~~~~v 742 (967)
|++++.+|||+||| ++.|++.|.+.
T Consensus 82 ~~~~~~lGRf~lR~--~g~Tva~G~V~ 106 (108)
T cd03704 82 FEDFPQLGRFTLRD--EGKTIAIGKVL 106 (108)
T ss_pred cccCCCcccEEEEe--CCCEEEEEEEE
Confidence 99999999999998 58899888774
No 169
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.63 E-value=3.1e-15 Score=150.31 Aligned_cols=148 Identities=22% Similarity=0.238 Sum_probs=95.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|++|+|||||+++|++.. + ..+ + .|+......+..+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~--~------------------------~~~------~----~t~g~~~~~~~~~ 56 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGED--I------------------------DTI------S----PTLGFQIKTLEYE 56 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--C------------------------CCc------C----CccccceEEEEEC
Confidence 45789999999999999999998620 0 000 0 0111122234445
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH----HHcCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA----HLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~----~~~~~~~iivviNK~D~~~ 478 (967)
+..+.++||||++.|...+...+..+|++++|+|+++.. ...+....+... ...+ .++++|+||+|+.+
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl~~ 129 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL------RLDDCKRELKELLQEERLAG-ATLLILANKQDLPG 129 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH------HHHHHHHHHHHHHhChhhcC-CCEEEEEECccccc
Confidence 678999999999988777777788999999999998721 111122222111 1133 45999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHc--CCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDI--HFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~--~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .++++.+++.. ....++++++||++|.|++++
T Consensus 130 ~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 130 ALS------EEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred CCC------HHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 321 11223333221 112468999999999999884
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=4e-15 Score=172.23 Aligned_cols=143 Identities=25% Similarity=0.303 Sum_probs=110.4
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
+|+++|++|+|||||+|+|++....+ .+...|+|.+..+..+.+++..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~--------------------------------v~~~~g~t~d~~~~~~~~~~~~ 48 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI--------------------------------VSDTPGVTRDRKYGDAEWGGRE 48 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce--------------------------------ecCCCCcccCceEEEEEECCeE
Confidence 48999999999999999999732111 1122477777777778888899
Q ss_pred EEEeeChhh--------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 406 FIIADTPGH--------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 406 ~~liDtpG~--------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
+.+|||||+ +.+...+..++..+|++++|+|+.. +......+....++..+.+ +++|+||+|+.
T Consensus 49 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~-------~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~ 120 (429)
T TIGR03594 49 FILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE-------GLTPEDEEIAKWLRKSGKP-VILVANKIDGK 120 (429)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC-------CCCHHHHHHHHHHHHhCCC-EEEEEECccCC
Confidence 999999996 5566677788899999999999998 7777777777777777776 99999999987
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.... .. + +..+++. +++++||.+|.|+.++
T Consensus 121 ~~~~~-----~~---~-~~~lg~~--~~~~vSa~~g~gv~~l 151 (429)
T TIGR03594 121 KEDAV-----AA---E-FYSLGFG--EPIPISAEHGRGIGDL 151 (429)
T ss_pred ccccc-----HH---H-HHhcCCC--CeEEEeCCcCCChHHH
Confidence 53321 11 1 2345553 5799999999999984
No 171
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.63 E-value=2.5e-15 Score=155.36 Aligned_cols=150 Identities=23% Similarity=0.279 Sum_probs=94.4
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
++.++.++|+++|++|||||||+++|++..-.. ....+.|++.....
T Consensus 36 ~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~---------------------------------~~~~~~t~~~~~~~ 82 (204)
T cd01878 36 RKRSGIPTVALVGYTNAGKSTLFNALTGADVYA---------------------------------EDQLFATLDPTTRR 82 (204)
T ss_pred hhhcCCCeEEEECCCCCCHHHHHHHHhcchhcc---------------------------------CCccceeccceeEE
Confidence 344667899999999999999999998721000 00112344444444
Q ss_pred eecCCc-eEEEeeChhhHH-----H---HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeE
Q psy3751 399 FNTPKR-KFIIADTPGHEQ-----Y---TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHI 467 (967)
Q Consensus 399 ~~~~~~-~~~liDtpG~~~-----~---~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~i 467 (967)
+.+++. .+.++||||+.+ + ...+...+..+|++++|+|++++. ...+..........++ -.++
T Consensus 83 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~------~~~~~~~~~~~l~~~~~~~~~v 156 (204)
T cd01878 83 LRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPD------YEEQIETVEKVLKELGAEDIPM 156 (204)
T ss_pred EEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCC------hhhHHHHHHHHHHHcCcCCCCE
Confidence 455444 899999999621 1 122334467899999999998721 1122223333333333 2459
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
++|+||+|+.+.... . ..... ...+++++||++|.|++++
T Consensus 157 iiV~NK~Dl~~~~~~--~-------~~~~~---~~~~~~~~Sa~~~~gi~~l 196 (204)
T cd01878 157 ILVLNKIDLLDDEEL--E-------ERLEA---GRPDAVFISAKTGEGLDEL 196 (204)
T ss_pred EEEEEccccCChHHH--H-------HHhhc---CCCceEEEEcCCCCCHHHH
Confidence 999999999764321 1 12222 2347899999999999984
No 172
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.62 E-value=5.5e-15 Score=146.75 Aligned_cols=148 Identities=16% Similarity=0.236 Sum_probs=96.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|.+|+|||||+++|++.. + ..+....++.+.....+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~------------------------~---------~~~~~~t~~~~~~~~~~~~~~~ 47 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI------------------------F---------TKDYKKTIGVDFLEKQIFLRQS 47 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC------------------------C---------CCCCCCcEEEEEEEEEEEEcCC
Confidence 479999999999999999998621 1 00111222233222222222
Q ss_pred --CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH--HcCCCeEEEEEecCCccC
Q psy3751 403 --KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH--LLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~--~~~~~~iivviNK~D~~~ 478 (967)
...+.++||||+++|...+...++.+|++++|+|+++.. .. ......+.... ..++| +|+|+||+|+..
T Consensus 48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~-----s~-~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 120 (162)
T cd04106 48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE-----SF-EAIESWKEKVEAECGDIP-MVLVQTKIDLLD 120 (162)
T ss_pred CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhCCCCC-EEEEEEChhccc
Confidence 357889999999999888888889999999999998721 11 11111111111 12445 899999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.. .++...+.+.+++ +++++||++|.|++++
T Consensus 121 ~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 121 QAVIT----NEEAEALAKRLQL---PLFRTSVKDDFNVTEL 154 (162)
T ss_pred ccCCC----HHHHHHHHHHcCC---eEEEEECCCCCCHHHH
Confidence 32211 1234445556665 8999999999999884
No 173
>PRK04213 GTP-binding protein; Provisional
Probab=99.62 E-value=6.1e-15 Score=152.11 Aligned_cols=152 Identities=24% Similarity=0.307 Sum_probs=95.0
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+|+|++.. .......|+|.+... +..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~---------------------------------~~~~~~~~~t~~~~~--~~~ 51 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKK---------------------------------VRVGKRPGVTRKPNH--YDW 51 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---------------------------------CccCCCCceeeCceE--Eee
Confidence 345789999999999999999998621 011123456655432 222
Q ss_pred CCceEEEeeChhh-----------HHHHHHHH----hhcccCCEEEEEEeCCCCC-C-CC--CCCchhhHHHHHHHHHHc
Q psy3751 402 PKRKFIIADTPGH-----------EQYTRNMI----TGASTADAVIILIDASKIK-F-NP--SVNLLTQTKRHSIIAHLL 462 (967)
Q Consensus 402 ~~~~~~liDtpG~-----------~~~~~~~~----~~~~~aD~~ilVvda~~~~-~-~~--~~g~~~~t~~~~~~~~~~ 462 (967)
. .+++|||||+ +.|...+. .++..+|++++|+|+.... . +. ..+...++.+.+..+...
T Consensus 52 ~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (201)
T PRK04213 52 G--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL 129 (201)
T ss_pred c--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc
Confidence 2 6899999993 34433322 2445678999999986511 0 00 012233455556666666
Q ss_pred CCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCc------cceEEeccccCCCccccc
Q psy3751 463 RIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQ------NINTIPISALNGDNIISA 519 (967)
Q Consensus 463 ~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~ii~iSa~~g~gi~~l 519 (967)
++| +++|+||+|+.+..+. . ..++.+.++.. ..+++++||++| |++++
T Consensus 130 ~~p-~iiv~NK~Dl~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l 183 (201)
T PRK04213 130 GIP-PIVAVNKMDKIKNRDE----V---LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEEL 183 (201)
T ss_pred CCC-eEEEEECccccCcHHH----H---HHHHHHHhcCCccccccCCcEEEEecccC-CHHHH
Confidence 777 8999999999754321 1 22233333431 126899999999 99984
No 174
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.62 E-value=4.3e-15 Score=148.82 Aligned_cols=149 Identities=21% Similarity=0.246 Sum_probs=91.8
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc-
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR- 404 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~- 404 (967)
+|+++|++|||||||+++|.+....+ ....+.|.+.....+..++.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v---------------------------------~~~~~~t~~~~~~~~~~~~~~ 48 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI---------------------------------ADYPFTTLVPNLGVVRVDDGR 48 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc---------------------------------cCCCccccCCcceEEEcCCCC
Confidence 59999999999999999998622111 00112233333334555555
Q ss_pred eEEEeeChhhH-------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc----CCCeEEEEEec
Q psy3751 405 KFIIADTPGHE-------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL----RIKHIIIAVNK 473 (967)
Q Consensus 405 ~~~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~----~~~~iivviNK 473 (967)
.+.++||||+. .+...+.+.+..+|++++|+|+++.. ....+.......+... ..+++++|+||
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 123 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD-----DPVEDYKTIRNELELYNPELLEKPRIVVLNK 123 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC-----CHHHHHHHHHHHHHHhCccccccccEEEEEc
Confidence 89999999963 23445556667899999999998721 0111112222222221 12458899999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+.+... ..+.+..+.+.. ...+++++||++|.|++++
T Consensus 124 ~Dl~~~~~-----~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 124 IDLLDEEE-----LFELLKELLKEL--WGKPVFPISALTGEGLDEL 162 (170)
T ss_pred hhcCCchh-----hHHHHHHHHhhC--CCCCEEEEecCCCCCHHHH
Confidence 99976432 112233334332 1347899999999999984
No 175
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.62 E-value=7.1e-15 Score=145.80 Aligned_cols=149 Identities=19% Similarity=0.253 Sum_probs=99.5
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
.||+++|++|+|||||+++|++..- ..+...+.+.+.....+..++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~ 47 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF---------------------------------DNQYQATIGIDFLSKTMYLEDK 47 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---------------------------------CccCCCceeeeEEEEEEEECCE
Confidence 3799999999999999999986211 112223455555555555544
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcC-CCeEEEEEecCCccCcC
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLR-IKHIIIAVNKMDLINYN 480 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~-~~~iivviNK~D~~~~~ 480 (967)
..+.+|||||+..|.......+..+|++++|+|++++. .+ .+....+... ...+ -.++++|+||+|+.+..
T Consensus 48 ~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~ 121 (161)
T cd01861 48 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQ-----SF-DNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR 121 (161)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHH-----HH-HHHHHHHHHHHHhCCCCCEEEEEEEChhccccC
Confidence 45889999999999888888889999999999998721 11 1122222222 2233 14599999999996432
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+. ..++...+.+..+ .+++++||++|.|++++
T Consensus 122 ~~----~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 122 QV----STEEGEKKAKELN---AMFIETSAKAGHNVKEL 153 (161)
T ss_pred cc----CHHHHHHHHHHhC---CEEEEEeCCCCCCHHHH
Confidence 21 1222333444444 47899999999999984
No 176
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.62 E-value=6.5e-15 Score=146.90 Aligned_cols=150 Identities=22% Similarity=0.241 Sum_probs=97.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.+||+++|.+|+|||||+++|+.. .+. .+....++.+.....+..++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~------------------------~~~---------~~~~~t~~~~~~~~~~~~~~ 48 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADD------------------------TYT---------ESYISTIGVDFKIRTIELDG 48 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC------------------------CCC---------CCCCCccceeEEEEEEEECC
Confidence 478999999999999999999861 110 01111223333323333333
Q ss_pred --ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeEEEEEecCCccCc
Q psy3751 404 --RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHIIIAVNKMDLINY 479 (967)
Q Consensus 404 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~iivviNK~D~~~~ 479 (967)
..+.++||||+++|.......++.+|++|+|+|+++.. ...+..+.+....... ..++++|.||+|+...
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~------s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 49 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE------SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH------HHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 46789999999999887777889999999999998711 1122223333333221 2348999999998653
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.... .++...+.+..+. +++++||++|.|++++
T Consensus 123 ~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 123 RVVD----YSEAQEFADELGI---PFLETSAKNATNVEQA 155 (166)
T ss_pred cCCC----HHHHHHHHHHcCC---eEEEEECCCCcCHHHH
Confidence 2211 1223444555554 8999999999999985
No 177
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.62 E-value=1.6e-15 Score=149.82 Aligned_cols=140 Identities=20% Similarity=0.267 Sum_probs=94.6
Q ss_pred EEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceEEE
Q psy3751 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFII 408 (967)
Q Consensus 329 ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~l 408 (967)
++|++|+|||||+++|++... ......|+|++.....+++++..+.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~l 47 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---------------------------------KVGNWPGVTVEKKEGRFKLGGKEIEI 47 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---------------------------------cccCCCCcccccceEEEeeCCeEEEE
Confidence 579999999999999986210 01112467777766677777889999
Q ss_pred eeChhhHHHHHH------HHhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 409 ADTPGHEQYTRN------MITGA--STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 409 iDtpG~~~~~~~------~~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
+||||+.++... ....+ ..+|++++|+|+... .+....+..+...+++ +|+|+||+|+.+..
T Consensus 48 iDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---------~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~ 117 (158)
T cd01879 48 VDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL---------ERNLYLTLQLLELGLP-VVVALNMIDEAEKR 117 (158)
T ss_pred EECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc---------hhHHHHHHHHHHcCCC-EEEEEehhhhcccc
Confidence 999998765421 12222 589999999999861 1112223334445665 89999999997643
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. +....+.+.+.++. +++++||.+|.|+.++
T Consensus 118 ~-----~~~~~~~~~~~~~~---~~~~iSa~~~~~~~~l 148 (158)
T cd01879 118 G-----IKIDLDKLSELLGV---PVVPTSARKGEGIDEL 148 (158)
T ss_pred c-----chhhHHHHHHhhCC---CeEEEEccCCCCHHHH
Confidence 2 11222334444454 8999999999999984
No 178
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.62 E-value=4.6e-15 Score=148.32 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=90.4
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
++|+++|++|+|||||+++|++.... .....+.|.+.....+..++.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~---------------------------------~~~~~~~t~~~~~~~~~~~~~ 47 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE---------------------------------VAPYPFTTKSLFVGHFDYKYL 47 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc---------------------------------cCCCCCcccceeEEEEccCce
Confidence 37999999999999999999872110 001123344444444555678
Q ss_pred eEEEeeChhhHH-------HH-HHHHhh-cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc-CCCeEEEEEecC
Q psy3751 405 KFIIADTPGHEQ-------YT-RNMITG-ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL-RIKHIIIAVNKM 474 (967)
Q Consensus 405 ~~~liDtpG~~~-------~~-~~~~~~-~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~-~~~~iivviNK~ 474 (967)
++++|||||+.+ +. ...+.. ...+|++|+|+|+++... .... ...+.+..+... ...++|+|+||+
T Consensus 48 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~~~-~~~~~~~~l~~~~~~~pvilv~NK~ 123 (168)
T cd01897 48 RWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YSLE-EQLSLFEEIKPLFKNKPVIVVLNKI 123 (168)
T ss_pred EEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cchH-HHHHHHHHHHhhcCcCCeEEEEEcc
Confidence 999999999732 11 112222 234699999999987211 0111 112223233222 234599999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+.+..+ ..+ .+.+.+. ...+++++||++|.|++++
T Consensus 124 Dl~~~~~--~~~----~~~~~~~---~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 124 DLLTFED--LSE----IEEEEEL---EGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred ccCchhh--HHH----HHHhhhh---ccCceEEEEecccCCHHHH
Confidence 9975322 111 2223322 2358999999999999985
No 179
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=9.5e-15 Score=169.51 Aligned_cols=146 Identities=25% Similarity=0.264 Sum_probs=105.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+|+|.+|+|||||+|+|++.... ..+...|+|.+.....+.++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~--------------------------------~v~~~~gvT~d~~~~~~~~~ 84 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA--------------------------------VVEDVPGVTRDRVSYDAEWN 84 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc--------------------------------cccCCCCCCEeeEEEEEEEC
Confidence 4478999999999999999999872111 01223577887777777888
Q ss_pred CceEEEeeChhhH--------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 403 KRKFIIADTPGHE--------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 403 ~~~~~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
+..+.+|||||+. .+...+..++..||++|+|+|+++ +......+.+..+...+.| +|+|+||+
T Consensus 85 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~-------~~s~~~~~i~~~l~~~~~p-iilV~NK~ 156 (472)
T PRK03003 85 GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV-------GATATDEAVARVLRRSGKP-VILAANKV 156 (472)
T ss_pred CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC-------CCCHHHHHHHHHHHHcCCC-EEEEEECc
Confidence 8899999999965 344555667889999999999998 5544445555566666665 99999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+.....+ . ..+ ..+++. ..+++||++|.|++++
T Consensus 157 Dl~~~~~~----~----~~~-~~~g~~--~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 157 DDERGEAD----A----AAL-WSLGLG--EPHPVSALHGRGVGDL 190 (472)
T ss_pred cCCccchh----h----HHH-HhcCCC--CeEEEEcCCCCCcHHH
Confidence 98643211 1 111 134543 2379999999999985
No 180
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=165.76 Aligned_cols=146 Identities=25% Similarity=0.275 Sum_probs=107.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+-++++|+|.||+|||||+|+|++....|.. ...|.|.|+-..++..+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT--------------------------------dI~GTTRDviee~i~i~ 263 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVT--------------------------------DIAGTTRDVIEEDINLN 263 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEec--------------------------------CCCCCccceEEEEEEEC
Confidence 5688999999999999999999986555422 23688999999999999
Q ss_pred CceEEEeeChhhH---H-----HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 403 KRKFIIADTPGHE---Q-----YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 403 ~~~~~liDtpG~~---~-----~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
+..+.++||+|.+ + -+......+.+||.+++|+|+++ ....+....+. . .-..+++++|+||+
T Consensus 264 G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~-------~~~~~d~~~~~-~-~~~~~~~i~v~NK~ 334 (454)
T COG0486 264 GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQ-------PLDKEDLALIE-L-LPKKKPIIVVLNKA 334 (454)
T ss_pred CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC-------CCchhhHHHHH-h-cccCCCEEEEEech
Confidence 9999999999933 3 34556677899999999999998 44444444443 1 22234599999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
|+...... ..+ +.. ...+++.+|+++|+|++.|.+
T Consensus 335 DL~~~~~~---------~~~--~~~-~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 335 DLVSKIEL---------ESE--KLA-NGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred hccccccc---------chh--hcc-CCCceEEEEecCccCHHHHHH
Confidence 99975321 001 111 233789999999999998654
No 181
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.61 E-value=4e-15 Score=148.58 Aligned_cols=151 Identities=20% Similarity=0.170 Sum_probs=96.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+||+++|.+|+|||||++++++. .|+ .+....++.+.....+..+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~------------------------~f~---------~~~~~t~~~~~~~~~~~~~ 48 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSED------------------------SFN---------PSFISTIGIDFKIRTIELD 48 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhC------------------------cCC---------cccccCccceEEEEEEEEC
Confidence 3589999999999999999999861 111 0111111222222223333
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~ 478 (967)
+ ..+.++||||+++|.......++.+|++|+|+|+++.. -..+..+.+...... .-.++++|.||+|+.+
T Consensus 49 ~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 49 GKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEK------SFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred CEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHH------HHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 3 46789999999998877777789999999999998711 111222222222222 1234899999999985
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.. .++...+.+..+. +++++||++|.|++++
T Consensus 123 ~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 123 KRVVS----KEEGEALADEYGI---KFLETSAKANINVEEA 156 (167)
T ss_pred ccCCC----HHHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 32211 1223444555554 7899999999999985
No 182
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.61 E-value=4e-15 Score=147.62 Aligned_cols=147 Identities=22% Similarity=0.303 Sum_probs=96.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
+||+++|++|+|||||+++|++..-. .+....++.+.....+..++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 47 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFK---------------------------------EDSQHTIGVEFGSKIIRVGGK 47 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---------------------------------CCCCCceeeeEEEEEEEECCE
Confidence 48999999999999999999862110 01111222222222233333
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchh-hHHHHHHHHHH---cCCCeEEEEEecCCccC
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLT-QTKRHSIIAHL---LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~-~t~~~~~~~~~---~~~~~iivviNK~D~~~ 478 (967)
..+.++||||+++|.......++.+|++++|+|+++ ...- +....+..... .++ ++++|+||+|+..
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~ 119 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN-------RTSFEALPTWLSDARALASPNI-VVILVGNKSDLAD 119 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhCCCCC-eEEEEEEchhcch
Confidence 467899999999998888888899999999999988 2211 12222222222 234 4999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+. ..++...+.+..+ .+++++||++|.|+.++
T Consensus 120 ~~~~----~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 120 QREV----TFLEASRFAQENG---LLFLETSALTGENVEEA 153 (161)
T ss_pred hccC----CHHHHHHHHHHcC---CEEEEEECCCCCCHHHH
Confidence 3221 1223344555555 38999999999999984
No 183
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.61 E-value=8.2e-15 Score=145.78 Aligned_cols=148 Identities=20% Similarity=0.184 Sum_probs=96.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
+||+++|.+|+|||||+++|++..- .....+.++.+.....+..++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~ 47 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF---------------------------------SEQYKSTIGVDFKTKTIEVDGK 47 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCceeeEEEEEEEEECCE
Confidence 5899999999999999999986210 011112233333333344444
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH-HHHHHHH-c-CCCeEEEEEecCCccCc
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKR-HSIIAHL-L-RIKHIIIAVNKMDLINY 479 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~-~~~~~~~-~-~~~~iivviNK~D~~~~ 479 (967)
..+.++|+||+..|.......++.+|++++|+|+++ ...-+... .+..... . .-.++++|+||+|+.+.
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~-------~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN-------RESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 468899999999998888888899999999999987 21111111 1112111 1 22459999999998753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+.. .+..+.+.+..++ +++++||.+|.|++++
T Consensus 121 ~~~~----~~~~~~~~~~~~~---~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 121 RQVS----REEAEAFAEEHGL---PFFETSAKTNTNVEEA 153 (164)
T ss_pred cCCC----HHHHHHHHHHcCC---eEEEEeCCCCCCHHHH
Confidence 2111 1223334555555 7899999999999984
No 184
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.61 E-value=1e-14 Score=145.28 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=96.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|.+|+|||||+++|++.. +.- +....++++.....+..+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~------------------------~~~---------~~~~t~~~~~~~~~~~~~~~ 48 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS------------------------FTS---------AFVSTVGIDFKVKTVFRNDK 48 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC------------------------CCC---------CCCCceeeEEEEEEEEECCE
Confidence 689999999999999999998611 100 000111112211222222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~ 480 (967)
...+.+|||||+++|.......++.+|++++|+|.++.. ...+..+.+..+... ...++++|+||+|+.+..
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE------SFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 356889999999999888888889999999999998721 111223333233322 234599999999997543
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .++..++.+.+++ +++++||++|.|+.++
T Consensus 123 ~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 123 VVS----SERGRQLADQLGF---EFFEASAKENINVKQV 154 (165)
T ss_pred ccC----HHHHHHHHHHcCC---EEEEEECCCCCCHHHH
Confidence 211 1223344555565 7899999999999985
No 185
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.61 E-value=3.5e-15 Score=147.15 Aligned_cols=145 Identities=30% Similarity=0.354 Sum_probs=93.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
+||+++|++|+|||||+++|+... ...+...+++.+.....+..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 48 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK---------------------------------FITEYKPGTTRNYVTTVIEEDGK 48 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---------------------------------CcCcCCCCceeeeeEEEEEECCE
Confidence 689999999999999999998721 1122334566666555555666
Q ss_pred -ceEEEeeChhhHHHHHH-------HHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 404 -RKFIIADTPGHEQYTRN-------MITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~-------~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
..+.++||||+.++... +...+...|.+++|+|+.. ............+.. +.| +++|+||+|
T Consensus 49 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~-------~~~~~~~~~~~~~~~-~~p-~ivv~nK~D 119 (161)
T TIGR00231 49 TYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEE-------ILEKQTKEIIHHAES-NVP-IILVGNKID 119 (161)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhh-------HhHHHHHHHHHhccc-CCc-EEEEEEccc
Confidence 67889999999887443 3333344454444444443 332333333333322 555 899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+...+ ........+...+. .+++++||.+|.|+.++
T Consensus 120 ~~~~~------~~~~~~~~~~~~~~--~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 120 LRDAK------LKTHVAFLFAKLNG--EPIIPLSAETGKNIDSA 155 (161)
T ss_pred CCcch------hhHHHHHHHhhccC--CceEEeecCCCCCHHHH
Confidence 98643 23334444555443 36899999999999873
No 186
>KOG0092|consensus
Probab=99.61 E-value=4.2e-15 Score=141.56 Aligned_cols=162 Identities=23% Similarity=0.286 Sum_probs=112.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeecee--eee
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYR--YFN 400 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~ 400 (967)
..+||+++|..++|||||+-++.. +.| .+-++. ||...|. .+.
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk------------------------~~F---------~e~~e~--TIGaaF~tktv~ 48 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVK------------------------DQF---------HENIEP--TIGAAFLTKTVT 48 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhh------------------------Ccc---------cccccc--ccccEEEEEEEE
Confidence 568999999999999999999875 112 221222 2222222 223
Q ss_pred cCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEE--EEecCCc
Q psy3751 401 TPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIII--AVNKMDL 476 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iiv--viNK~D~ 476 (967)
.++ .++.||||+|+++|-.-....++.|+++|+|.|.++. ....+.+..+.-+....-+.+++ |.||+|+
T Consensus 49 ~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~------~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL 122 (200)
T KOG0092|consen 49 VDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDE------ESFEKAKNWVKELQRQASPNIVIALVGNKADL 122 (200)
T ss_pred eCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccH------HHHHHHHHHHHHHHhhCCCCeEEEEecchhhh
Confidence 333 5677999999999988888889999999999999982 12234455555555444455555 8999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEK 543 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~ 543 (967)
.+..+..+++ .+.+.+..|. .++.+||++|.|++++ +..+.+.+|....
T Consensus 123 ~~~R~V~~~e----a~~yAe~~gl---l~~ETSAKTg~Nv~~i-----------f~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 123 LERREVEFEE----AQAYAESQGL---LFFETSAKTGENVNEI-----------FQAIAEKLPCSDP 171 (200)
T ss_pred hhcccccHHH----HHHHHHhcCC---EEEEEecccccCHHHH-----------HHHHHHhccCccc
Confidence 9755544443 4556666666 8999999999999985 5556666665443
No 187
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.60 E-value=5.7e-15 Score=145.30 Aligned_cols=132 Identities=20% Similarity=0.215 Sum_probs=88.1
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
+|+++|++|+|||||+|+|.+... . .+ .|..+ .+...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-----------------------~-----------~~---~~~~v-----~~~~~- 39 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-----------------------L-----------AR---KTQAV-----EFNDK- 39 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-----------------------c-----------Cc---cceEE-----EECCC-
Confidence 699999999999999999875210 0 00 11111 11111
Q ss_pred EEEeeChhh----HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 406 FIIADTPGH----EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 406 ~~liDtpG~----~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
.+|||||. .++...++.++..+|++++|+|+++. ........+.+ ..+. ++++++||+|+.+.+.
T Consensus 40 -~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~-------~s~~~~~~~~~--~~~~-~ii~v~nK~Dl~~~~~ 108 (158)
T PRK15467 40 -GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDP-------ESRLPAGLLDI--GVSK-RQIAVISKTDMPDADV 108 (158)
T ss_pred -CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCc-------ccccCHHHHhc--cCCC-CeEEEEEccccCcccH
Confidence 26999994 57778888888999999999999972 21122211111 1233 4899999999865332
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.+++++.++. .|++++||++|+|++++
T Consensus 109 -------~~~~~~~~~~~~~-~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 109 -------AATRKLLLETGFE-EPIFELNSHDPQSVQQL 138 (158)
T ss_pred -------HHHHHHHHHcCCC-CCEEEEECCCccCHHHH
Confidence 2234455566652 58999999999999984
No 188
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.60 E-value=9.9e-15 Score=145.09 Aligned_cols=151 Identities=21% Similarity=0.218 Sum_probs=96.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
+||+++|++|+|||||+++|++..-. + ......|.+.......+.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-----------------------------~--~~~~t~~~~~~~~~v~~~~~~~ 50 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFS-----------------------------E--NQESTIGAAFLTQTVNLDDTTV 50 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------C--CCCCccceeEEEEEEEECCEEE
Confidence 68999999999999999999872100 0 0011112222222222333345
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeEEEEEecCCccCcCHH
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~iivviNK~D~~~~~~~ 482 (967)
.+.+||+||+++|.......++.+|++++|+|+++.. ...+....+..+.... ..++++++||+|+.+....
T Consensus 51 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 124 (163)
T cd01860 51 KFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEE------SFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQV 124 (163)
T ss_pred EEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHH------HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcC
Confidence 6889999999998877777788999999999998721 1122233333333332 2348999999998743221
Q ss_pred HHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. .++...+.+..+ .+++++||++|.|+.++
T Consensus 125 ~----~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 125 S----TEEAQEYADENG---LLFFETSAKTGENVNEL 154 (163)
T ss_pred C----HHHHHHHHHHcC---CEEEEEECCCCCCHHHH
Confidence 1 112334455555 37899999999999985
No 189
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.60 E-value=1.4e-14 Score=144.51 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=96.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP- 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 402 (967)
.+||+++|+.|+|||||+++|+.. . +. .+....+..+.....+..+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~--~----------------------~~---------~~~~~t~~~~~~~~~~~~~~ 48 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEK--K----------------------FM---------ADCPHTIGVEFGTRIIEVNG 48 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC--C----------------------CC---------CCCCcccceeEEEEEEEECC
Confidence 378999999999999999999861 1 10 0000011112211222333
Q ss_pred -CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeEEEEEecCCccCc
Q psy3751 403 -KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~iivviNK~D~~~~ 479 (967)
...+.++||||++.|.......++.+|++|+|+|+++.. -.....+.+....... ..++++|.||+|+.+.
T Consensus 49 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~------s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS------TYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 346789999999999888888889999999999998721 0111222222222221 2458999999999754
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+.. .++...+.+..++ +++++||++|.|+.++
T Consensus 123 ~~~~----~~~~~~~~~~~~~---~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 123 RDVT----YEEAKQFADENGL---LFLECSAKTGENVEDA 155 (166)
T ss_pred cCcC----HHHHHHHHHHcCC---EEEEEECCCCCCHHHH
Confidence 3211 2233445555554 8999999999999985
No 190
>KOG0084|consensus
Probab=99.60 E-value=6.8e-15 Score=140.69 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=116.2
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
-.-.+||+++|..|+|||.|+-++.. +.+.++....|.+|+..+.++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~---------------------------------~~f~e~~~sTIGVDf~~rt~e 52 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKD---------------------------------DTFTESYISTIGVDFKIRTVE 52 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhcc---------------------------------CCcchhhcceeeeEEEEEEee
Confidence 34678999999999999999999875 455666667788888888888
Q ss_pred cCCc--eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 401 TPKR--KFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 401 ~~~~--~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
.++. ++.+|||+|+++|...+.+..+.|+++|+|.|.++ ..| ...++..+-+.....-+++ .++|.||+|+.
T Consensus 53 ~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF----~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 53 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESF----NNVKRWIQEIDRYASENVP-KLLVGNKCDLT 127 (205)
T ss_pred ecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHh----hhHHHHHHHhhhhccCCCC-eEEEeeccccH
Confidence 8765 57899999999999999999999999999999998 223 2223322222222223445 78889999998
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccce-EEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNIN-TIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~-ii~iSa~~g~gi~~l 519 (967)
+......+ +.+.+...++. + ++++||+++.|+++.
T Consensus 128 ~~~~v~~~----~a~~fa~~~~~---~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 128 EKRVVSTE----EAQEFADELGI---PIFLETSAKDSTNVEDA 163 (205)
T ss_pred hheecCHH----HHHHHHHhcCC---cceeecccCCccCHHHH
Confidence 64433222 23566777776 5 999999999999884
No 191
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.60 E-value=6.8e-15 Score=146.60 Aligned_cols=150 Identities=25% Similarity=0.268 Sum_probs=96.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|.+|+|||||+++|++.. + ..+....++.+.....+..++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~------------------------~---------~~~~~~t~~~~~~~~~~~~~~ 49 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNE------------------------F---------NLDSKSTIGVEFATRSIQIDG 49 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC------------------------C---------CCCCCCccceEEEEEEEEECC
Confidence 4789999999999999999998621 1 001112223333333344444
Q ss_pred --ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCc
Q psy3751 404 --RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINY 479 (967)
Q Consensus 404 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~ 479 (967)
..+.++||||++.|.......+..+|++|+|+|+++.. ......+.+..+... .-.++++|+||+|+.+.
T Consensus 50 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 50 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQ------TFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHH------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 46789999999988877777788999999999998611 011112222222221 12459999999998753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+.. .++...+....+ .+++++||++|.|+.++
T Consensus 124 ~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 124 RAVP----TEEAKAFAEKNG---LSFIETSALDGTNVEEA 156 (165)
T ss_pred ccCC----HHHHHHHHHHcC---CEEEEEECCCCCCHHHH
Confidence 2211 223334444444 47899999999999985
No 192
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.60 E-value=5.7e-15 Score=146.94 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=93.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.+||+++|.+|+|||||++++++.... ....+ .+.+.....+..++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~----------------------------~~~~~------t~~~~~~~~~~~~~ 47 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV----------------------------TDYDP------TIEDSYTKQCEIDG 47 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC----------------------------cccCC------CccceEEEEEEECC
Confidence 479999999999999999999862110 00000 00000011122233
Q ss_pred --ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecCCcc
Q psy3751 404 --RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKMDLI 477 (967)
Q Consensus 404 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~D~~ 477 (967)
..+.++||||+++|...+...+..+|++++|+|+++.. .. ......+..... .++| +++|+||+|+.
T Consensus 48 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~ 120 (164)
T cd04145 48 QWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG-----SF-EEVDKFHTQILRVKDRDEFP-MILVGNKADLE 120 (164)
T ss_pred EEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHHhCCCCCC-EEEEeeCcccc
Confidence 46889999999999887777889999999999998721 01 111222222211 2344 89999999987
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+.. .++...+.+..+. +++++||++|.|++++
T Consensus 121 ~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 121 HQRKVS----REEGQELARKLKI---PYIETSAKDRLNVDKA 155 (164)
T ss_pred ccceec----HHHHHHHHHHcCC---cEEEeeCCCCCCHHHH
Confidence 532211 1223445555554 8899999999999985
No 193
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.60 E-value=7.4e-15 Score=150.02 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=98.7
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC--
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK-- 403 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-- 403 (967)
.|+++|..|+|||||+.++... .| ..+....++.+.....+..++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~------------------------~f---------~~~~~~Ti~~~~~~~~i~~~~~~ 48 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDD------------------------TF---------CEACKSGVGVDFKIKTVELRGKK 48 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhC------------------------CC---------CCcCCCcceeEEEEEEEEECCEE
Confidence 5899999999999999999861 11 111222333444444455555
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcCH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~~ 481 (967)
..+.+|||+|+++|...+...++.+|++|+|+|.++.. -.......+...... .-.++|+|.||+|+.+.++
T Consensus 49 v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~------Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 122 (202)
T cd04120 49 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE------TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 122 (202)
T ss_pred EEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHH------HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 56789999999999888888889999999999999821 011112222223222 1234999999999975332
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
.. ..+.+++.++.. +..++.+||++|.|++++.+
T Consensus 123 v~----~~~~~~~a~~~~--~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 123 IS----RQQGEKFAQQIT--GMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred cC----HHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHH
Confidence 11 122333444431 23789999999999998643
No 194
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.60 E-value=1.2e-14 Score=151.14 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=98.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|.+|+|||||+++|++. .| ..+....++.+.....+..+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~------------------------~~---------~~~~~~T~~~d~~~~~i~~~~~ 47 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKE------------------------GF---------GKSYKQTIGLDFFSKRVTLPGN 47 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcC------------------------CC---------CCCCCCceeEEEEEEEEEeCCC
Confidence 47999999999999999999861 11 11112223344433344443
Q ss_pred -CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc-----CCCeEEEEEecCCc
Q psy3751 403 -KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL-----RIKHIIIAVNKMDL 476 (967)
Q Consensus 403 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~-----~~~~iivviNK~D~ 476 (967)
...+.||||||++.|.......++.+|++|+|+|+++.. ...+..+.+..+... ..+++|+|.||+|+
T Consensus 48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~------s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQ------SFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHH------HHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 357889999999888777777789999999999998721 111222222222221 12458999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
.+..+. ..+....+.+..++ +++++||++|.|++++.
T Consensus 122 ~~~~~v----~~~~~~~~~~~~~~---~~~~iSAktg~gv~~lf 158 (215)
T cd04109 122 EHNRTV----KDDKHARFAQANGM---ESCLVSAKTGDRVNLLF 158 (215)
T ss_pred cccccc----CHHHHHHHHHHcCC---EEEEEECCCCCCHHHHH
Confidence 743221 12234455555554 78999999999999853
No 195
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.60 E-value=5.1e-15 Score=130.00 Aligned_cols=87 Identities=30% Similarity=0.502 Sum_probs=81.0
Q ss_pred CCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--cc
Q psy3751 546 KKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YL 623 (967)
Q Consensus 546 ~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~ 623 (967)
++||+|+|+++|+..+.| ++++|+|++|++++||+|.++|.+..++|++|+.++.++++|.|||+|+|.|++ ..
T Consensus 2 ~~p~r~~V~~vf~~~g~g----~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIG----TVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCce----EEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHH
Confidence 479999999999988777 899999999999999999999999999999999999999999999999999986 56
Q ss_pred CCCCCcccccCCC
Q psy3751 624 DISRGNMLVSPFK 636 (967)
Q Consensus 624 ~i~~G~vl~~~~~ 636 (967)
++++||+|+++++
T Consensus 78 ~v~~G~vl~~~~~ 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HcCCcCEEccCCC
Confidence 7999999998743
No 196
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.60 E-value=5.8e-15 Score=137.83 Aligned_cols=131 Identities=24% Similarity=0.292 Sum_probs=92.3
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||.+||.++||||||+++|.+.... ...|..+ .+.+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-------------------------------------~~KTq~i-----~~~~-- 38 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-------------------------------------YKKTQAI-----EYYD-- 38 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-------------------------------------cCcccee-----Eecc--
Confidence 6999999999999999999872211 1112211 1111
Q ss_pred EEEeeChh----hHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 406 FIIADTPG----HEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 406 ~~liDtpG----~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
.+||||| +..|...++.....||++++|.||+++.. -+.+ .++..+.. ++|-|+||+|+... .
T Consensus 39 -~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~----~~pP------~fa~~f~~-pvIGVITK~Dl~~~-~ 105 (143)
T PF10662_consen 39 -NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS----VFPP------GFASMFNK-PVIGVITKIDLPSD-D 105 (143)
T ss_pred -cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc----cCCc------hhhcccCC-CEEEEEECccCccc-h
Confidence 4599999 77888999999999999999999998211 0111 12333444 49999999999842 2
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... +..+++++..|.++ ++++|+.+|+|+++|
T Consensus 106 ~~i----~~a~~~L~~aG~~~--if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 106 ANI----ERAKKWLKNAGVKE--IFEVSAVTGEGIEEL 137 (143)
T ss_pred hhH----HHHHHHHHHcCCCC--eEEEECCCCcCHHHH
Confidence 222 33456777888864 599999999999983
No 197
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.60 E-value=9.2e-15 Score=147.97 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=97.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee--
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN-- 400 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-- 400 (967)
..+||+++|.+|+|||||++++.... +. .+....++.+.....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~------------------------~~---------~~~~~t~~~~~~~~~~~~~ 49 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNK------------------------FN---------PKFITTVGIDFREKRVVYN 49 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC------------------------CC---------ccCCCccceEEEEEEEEEc
Confidence 45899999999999999999998621 00 00011111121111111
Q ss_pred ----------cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc---CCCeE
Q psy3751 401 ----------TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL---RIKHI 467 (967)
Q Consensus 401 ----------~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~---~~~~i 467 (967)
.....+.||||||+++|.......++.+|++++|+|+++.. .. ......+...... ..+++
T Consensus 50 ~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----s~-~~~~~~~~~i~~~~~~~~~pi 123 (180)
T cd04127 50 SSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQ-----SF-LNVRNWMSQLQTHAYCENPDI 123 (180)
T ss_pred CccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCCcE
Confidence 12356889999999999888888889999999999998711 00 1112222222221 23459
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
++|.||+|+.+..+.. .++...+.+.++. +++++||++|.|++++.
T Consensus 124 iiv~nK~Dl~~~~~v~----~~~~~~~~~~~~~---~~~e~Sak~~~~v~~l~ 169 (180)
T cd04127 124 VLCGNKADLEDQRQVS----EEQAKALADKYGI---PYFETSAATGTNVEKAV 169 (180)
T ss_pred EEEEeCccchhcCccC----HHHHHHHHHHcCC---eEEEEeCCCCCCHHHHH
Confidence 9999999997532211 1234555666664 79999999999999853
No 198
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.59 E-value=1.7e-14 Score=144.75 Aligned_cols=151 Identities=18% Similarity=0.181 Sum_probs=94.2
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
+||+++|++|+|||||+++|+...-. .+....++.+.....+..++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~~~~~ 47 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFS---------------------------------NQYKATIGADFLTKEVTVDDK 47 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---------------------------------cCcCCccceEEEEEEEEECCE
Confidence 48999999999999999999862100 00001112222222333443
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC-----CCeEEEEEecCCcc
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR-----IKHIIIAVNKMDLI 477 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~-----~~~iivviNK~D~~ 477 (967)
..+.++|+||++.|.......++.+|++|+|+|+.+.. .........-.+..... -.++++|+||+|+.
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPK-----SFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 35679999999999888888889999999999998711 00111111111122221 23489999999998
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.. ..+.++.+.+..+. .+++++||++|.|+.++
T Consensus 123 ~~~~~----~~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 123 EKRQV----STKKAQQWCQSNGN--IPYFETSAKEAINVEQA 158 (172)
T ss_pred ccccc----CHHHHHHHHHHcCC--ceEEEEECCCCCCHHHH
Confidence 42211 11223445555542 48899999999999885
No 199
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.59 E-value=7.4e-15 Score=146.81 Aligned_cols=151 Identities=24% Similarity=0.274 Sum_probs=96.9
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC--
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK-- 403 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-- 403 (967)
||+++|..++|||||++++++. .| ..+....+..+.....+..++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~------------------------~f---------~~~~~~t~~~~~~~~~~~~~~~~ 48 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD------------------------VF---------DKNYKATIGVDFEMERFEILGVP 48 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcC------------------------CC---------CCCCCCceeeEEEEEEEEECCEE
Confidence 6999999999999999999861 11 111111222232223333333
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-c--CCCeEEEEEecCCccCcC
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-L--RIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~--~~~~iivviNK~D~~~~~ 480 (967)
.++.+|||||+++|.......++.+|++++|+|+++.. ......+++..... . +.+++|+|.||+|+.+..
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~------s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVA------SLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHH------HHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 56889999999999888778889999999999997710 11112222322221 1 124589999999986532
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+ .....++...+.++++. +++++||++|.|++++.
T Consensus 123 ~--~~~~~~~~~~~~~~~~~---~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 123 Q--YALMEQDAIKLAAEMQA---EYWSVSALSGENVREFF 157 (170)
T ss_pred c--ccccHHHHHHHHHHcCC---eEEEEECCCCCCHHHHH
Confidence 2 11122334445555554 78999999999999854
No 200
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.59 E-value=5.7e-15 Score=145.61 Aligned_cols=139 Identities=26% Similarity=0.305 Sum_probs=94.5
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
++|+++|++|+|||||+++|++..... .....++|.+.....+..++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 49 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI--------------------------------VSDIAGTTRDVIEESIDIGGI 49 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe--------------------------------ccCCCCCccceEEEEEEeCCE
Confidence 479999999999999999998621110 001235566655556666778
Q ss_pred eEEEeeChhhHHHH--------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 405 KFIIADTPGHEQYT--------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 405 ~~~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
+++++||||+.++. ..+...+..+|++++|+|+++ .. +.............++++|+||+|+
T Consensus 50 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-------~~---~~~~~~~~~~~~~~~vi~v~nK~D~ 119 (157)
T cd04164 50 PVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASR-------GL---DEEDLEILELPADKPIIVVLNKSDL 119 (157)
T ss_pred EEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC-------CC---CHHHHHHHHhhcCCCEEEEEEchhc
Confidence 89999999975542 234456789999999999997 22 2222222332333559999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+.... .... ...+++++||++|.|+.++
T Consensus 120 ~~~~~~-----------~~~~---~~~~~~~~Sa~~~~~v~~l 148 (157)
T cd04164 120 LPDSEL-----------LSLL---AGKPIIAISAKTGEGLDEL 148 (157)
T ss_pred CCcccc-----------cccc---CCCceEEEECCCCCCHHHH
Confidence 864321 1111 1348999999999999984
No 201
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.59 E-value=6.8e-15 Score=147.42 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=96.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+||+++|.+|+|||||+++++.. .++ .+....++.+.....+..+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~------------------------~~~---------~~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTN------------------------KFD---------TQLFHTIGVEFLNKDLEVD 50 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcC------------------------CCC---------cCcCCceeeEEEEEEEEEC
Confidence 5689999999999999999999851 110 1111122222222233333
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC-CCCCCCchhhHHHHH-HHHH---HcCCCeEEEEEecCC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK-FNPSVNLLTQTKRHS-IIAH---LLRIKHIIIAVNKMD 475 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~-~~~~~g~~~~t~~~~-~~~~---~~~~~~iivviNK~D 475 (967)
+ ..+.|+||||+++|.......++.+|++++|+|.++.. |+ . .......+ .... ..++ ++++|.||+|
T Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~-~~~~~~~~~~~~~~~~~~~~-piilv~nK~D 125 (170)
T cd04116 51 GHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQ---N-LSNWKKEFIYYADVKEPESF-PFVVLGNKND 125 (170)
T ss_pred CeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHH---h-HHHHHHHHHHhcccccCCCC-cEEEEEECcc
Confidence 3 45779999999999887777889999999999998721 11 0 11111111 1111 1123 4899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+... +. ..++++++.++++. .+++++||++|.|+.++
T Consensus 126 l~~~-~~----~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 126 IPER-QV----STEEAQAWCRENGD--YPYFETSAKDATNVAAA 162 (170)
T ss_pred cccc-cc----CHHHHHHHHHHCCC--CeEEEEECCCCCCHHHH
Confidence 8632 11 12334555666653 37899999999999984
No 202
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.59 E-value=3.2e-14 Score=146.18 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=99.6
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....++|+++|++|+|||||+++|++..... ......|.|.++.+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~ 68 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLA-------------------------------RTSKTPGRTQLINFFEV 68 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-------------------------------cccCCCCceeEEEEEec
Confidence 44567899999999999999999998721000 00111344554443322
Q ss_pred ecCCceEEEeeChhh----------HHHHHHH---HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCe
Q psy3751 400 NTPKRKFIIADTPGH----------EQYTRNM---ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKH 466 (967)
Q Consensus 400 ~~~~~~~~liDtpG~----------~~~~~~~---~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~ 466 (967)
+.++.||||||+ +.+.... +.....++++++|+|+.. +......+....+...+++
T Consensus 69 ---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-------~~~~~~~~i~~~l~~~~~~- 137 (196)
T PRK00454 69 ---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH-------PLKELDLQMIEWLKEYGIP- 137 (196)
T ss_pred ---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCC-------CCCHHHHHHHHHHHHcCCc-
Confidence 368999999994 3333222 333345678999999887 4444444445555667776
Q ss_pred EEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 467 IIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 467 iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+++++||+|+.+.. ..+...+.+...+... ..+++++||++|.|++++
T Consensus 138 ~iiv~nK~Dl~~~~--~~~~~~~~i~~~l~~~---~~~~~~~Sa~~~~gi~~l 185 (196)
T PRK00454 138 VLIVLTKADKLKKG--ERKKQLKKVRKALKFG---DDEVILFSSLKKQGIDEL 185 (196)
T ss_pred EEEEEECcccCCHH--HHHHHHHHHHHHHHhc---CCceEEEEcCCCCCHHHH
Confidence 88999999997532 2334444455555443 348899999999999984
No 203
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.59 E-value=1.6e-14 Score=144.19 Aligned_cols=149 Identities=18% Similarity=0.203 Sum_probs=94.4
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec--C
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT--P 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~ 402 (967)
+||+++|++++|||||+++|++.. + ..+....++.+.....+.. .
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~------------------------~---------~~~~~~t~~~~~~~~~~~~~~~ 47 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR------------------------F---------VSKYLPTIGIDYGVKKVSVRNK 47 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------------------------C---------CCCCCCccceeEEEEEEEECCe
Confidence 489999999999999999998621 1 0111122222322222333 2
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHc------CCCeEEEEEecCC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLL------RIKHIIIAVNKMD 475 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~------~~~~iivviNK~D 475 (967)
...++++||||++.|.......++.+|++|+|+|.++.. .. ......+... ... ...++++|+||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~-----s~-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 48 EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQ-----SF-EALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred EEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHH-----HH-HhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 357889999999988877777789999999999998721 01 1111222211 111 2356999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+.... ..++.+.+.+..+. +++++||++|.|+.++
T Consensus 122 l~~~~~~----~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 122 LTKHRAV----SEDEGRLWAESKGF---KYFETSACTGEGVNEM 158 (168)
T ss_pred ccccccc----CHHHHHHHHHHcCC---eEEEEECCCCCCHHHH
Confidence 9742111 11222334445553 7899999999999985
No 204
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.59 E-value=6.6e-15 Score=142.68 Aligned_cols=131 Identities=22% Similarity=0.212 Sum_probs=84.8
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++|++|+|||||+++|++.. +. ...|+. +++..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~------------------------~~-------------~~~t~~-----~~~~~-- 37 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE------------------------IL-------------YKKTQA-----VEYND-- 37 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc------------------------cc-------------ccccee-----EEEcC--
Confidence 79999999999999999998621 00 001111 11111
Q ss_pred EEEeeChhh----HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 406 FIIADTPGH----EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 406 ~~liDtpG~----~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
.+|||||. ..+.+.+...++.+|++|+|+|++++. ..+....+ ...+. ++|+|+||+|+.+...
T Consensus 38 -~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~-------s~~~~~~~---~~~~~-p~ilv~NK~Dl~~~~~ 105 (142)
T TIGR02528 38 -GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPE-------SRFPPGFA---SIFVK-PVIGLVTKIDLAEADV 105 (142)
T ss_pred -eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCC-------cCCChhHH---HhccC-CeEEEEEeeccCCccc
Confidence 68999997 345555556689999999999998832 11222222 12233 5888999999875321
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+..+++++..+. .+++++||++|.|++++
T Consensus 106 -----~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 106 -----DIERAKELLETAGA--EPIFEISSVDEQGLEAL 136 (142)
T ss_pred -----CHHHHHHHHHHcCC--CcEEEEecCCCCCHHHH
Confidence 12233444555443 37899999999999884
No 205
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.59 E-value=2.5e-14 Score=142.91 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=96.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+||+++|.+|+|||||+++|+...-.. ......|.+.......+...
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~ 51 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------------------------VHDLTIGVEFGARMITIDGK 51 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-------------------------------CCCCccceeEEEEEEEECCE
Confidence 35799999999999999999998621000 00001122222222222222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~ 480 (967)
...+.++||||++.|.......++.+|++|+|+|+++.. ........+...... .-.++|+|.||+|+.+..
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 125 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE------TFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR 125 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 346889999999998887777889999999999998621 111122222222221 123489999999997432
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. ..++.+.+.+..+. +++++||++|.|++++
T Consensus 126 ~~----~~~~~~~~~~~~~~---~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 126 EV----SYEEGEAFAKEHGL---IFMETSAKTASNVEEA 157 (168)
T ss_pred CC----CHHHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 11 12233445555554 7899999999999984
No 206
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=4.8e-15 Score=152.74 Aligned_cols=150 Identities=20% Similarity=0.212 Sum_probs=96.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|.+|+|||||+++|++.. + ..+....+..+.....+..+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~------------------------~---------~~~~~~t~~~d~~~~~v~~~~~ 47 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI------------------------F---------SQHYKATIGVDFALKVIEWDPN 47 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC------------------------C---------CCCCCCceeEEEEEEEEEECCC
Confidence 479999999999999999998621 1 00111122223333333333
Q ss_pred -CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH-------HcCCCeEEEEEecC
Q psy3751 403 -KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH-------LLRIKHIIIAVNKM 474 (967)
Q Consensus 403 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~-------~~~~~~iivviNK~ 474 (967)
...+.+|||||++.|...+...++.+|++|+|+|.++.. .+ ......+..+. ..++ |+|+|.||+
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~-----s~-~~~~~~~~~i~~~~~~~~~~~~-piilv~NK~ 120 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPS-----TF-EAVLKWKADLDSKVTLPNGEPI-PCLLLANKC 120 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhhcccCCCCC-cEEEEEECC
Confidence 356789999999998877777789999999999998721 00 11111111111 1233 489999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+.+.... ..+++..+.+..++ .+++++||++|.|++++.
T Consensus 121 Dl~~~~~~----~~~~~~~~~~~~~~--~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 121 DLKKRLAK----DGEQMDQFCKENGF--IGWFETSAKEGINIEEAM 160 (201)
T ss_pred Cccccccc----CHHHHHHHHHHcCC--ceEEEEeCCCCCCHHHHH
Confidence 99742211 12334555666653 378999999999999853
No 207
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=4.1e-14 Score=137.96 Aligned_cols=157 Identities=19% Similarity=0.203 Sum_probs=105.6
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+.....-|+++|..|+|||||+|+|++..+. .+++.. .|.|..+.+..
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L---------ArtSkt----------------------PGrTq~iNff~- 67 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNL---------ARTSKT----------------------PGRTQLINFFE- 67 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcce---------eecCCC----------------------CCccceeEEEE-
Confidence 3446677999999999999999999984321 223332 46666665544
Q ss_pred ecCCceEEEeeChhh----------H---HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCe
Q psy3751 400 NTPKRKFIIADTPGH----------E---QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKH 466 (967)
Q Consensus 400 ~~~~~~~~liDtpG~----------~---~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~ 466 (967)
.++ .+.|+|.||. + +++..-+..-.+-.+++++||+.. ++....++.+..+...+++
T Consensus 68 -~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~-------~~~~~D~em~~~l~~~~i~- 137 (200)
T COG0218 68 -VDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARH-------PPKDLDREMIEFLLELGIP- 137 (200)
T ss_pred -ecC-cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCC-------CCcHHHHHHHHHHHHcCCC-
Confidence 333 3889999991 1 222222333245788999999999 7888888999999999998
Q ss_pred EEEEEecCCccCcCHHHHHHHHHHHHHHH-HHcCCccceEEeccccCCCccccccc
Q psy3751 467 IIIAVNKMDLINYNQIFYKRIVYAYKKFA-EDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 467 iivviNK~D~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
++|++||+|.++.++ .......+.+.+ ..... ...++..|+.++.|++++..
T Consensus 138 ~~vv~tK~DKi~~~~--~~k~l~~v~~~l~~~~~~-~~~~~~~ss~~k~Gi~~l~~ 190 (200)
T COG0218 138 VIVVLTKADKLKKSE--RNKQLNKVAEELKKPPPD-DQWVVLFSSLKKKGIDELKA 190 (200)
T ss_pred eEEEEEccccCChhH--HHHHHHHHHHHhcCCCCc-cceEEEEecccccCHHHHHH
Confidence 888999999997432 122222233222 11222 21278899999999998543
No 208
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.58 E-value=3.2e-14 Score=140.33 Aligned_cols=149 Identities=19% Similarity=0.230 Sum_probs=97.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec--C
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT--P 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~ 402 (967)
+||+++|.+|+|||||+++|++.... .+..+..+.+.....+.. .
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~~~~~ 47 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFD---------------------------------ENYKSTIGVDFKSKTIEIDGK 47 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC---------------------------------CccCCceeeeeEEEEEEECCE
Confidence 47999999999999999999862111 001111122222222332 3
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~iivviNK~D~~~~~ 480 (967)
...+.++|+||+..+.......+..+|++++|+|+.+.+ ........+....... ..++++++||+|+....
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE------SFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 467889999999999888888889999999999998711 1112223333333322 24599999999997322
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+. ..++++.+.+..+ .+++.+||++|.|+.++
T Consensus 122 ~~----~~~~~~~~~~~~~---~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 122 QV----STEEAQQFAKENG---LLFFETSAKTGENVEEL 153 (159)
T ss_pred cc----cHHHHHHHHHHcC---CeEEEEecCCCCCHHHH
Confidence 22 2233444555444 48999999999999884
No 209
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.58 E-value=1.3e-14 Score=164.98 Aligned_cols=173 Identities=13% Similarity=0.055 Sum_probs=126.3
Q ss_pred HHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhc-CCCCCCeeEEEeeCCCCC--hhhHHHHHHHHHHhCCcEEEEecch
Q psy3751 28 HIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAF-RPSRFPFPMVHIDTGHNF--PEVISFRDNCISKLGETLIVRSVED 104 (967)
Q Consensus 28 ~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~-~~~~~~i~~v~idtg~~~--pet~~~~~~~~~~~gi~i~~~~~~~ 104 (967)
+.++..+..+++++||+|||+||+||||++.++. ...+.++.++|+|+|... .+..++++++|+++|+++++.+.+.
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~ 85 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQL 85 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4556667778999999999999999999998764 222568999999999863 2345899999999999999886643
Q ss_pred hhhhcccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcccccccccc
Q psy3751 105 SIMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTR 184 (967)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 184 (967)
.. .+......+...|+..+.+.+.+ .+++++||+.||..++..++++++....+...+ .|..
T Consensus 86 ~~------~~~~~e~~AR~~Ry~~~~~~~~~--~~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm---~~~~------- 147 (436)
T PRK10660 86 DQ------RGLGIEAAARQARYQAFARTLLP--GEVLVTAQHLDDQCETFLLALKRGSGPAGLSAM---AEVS------- 147 (436)
T ss_pred cC------CCCCHHHHHHHHHHHHHHHHHHh--CCEEEEcCchHHHHHHHHHHHHcCCChhhcccc---ceec-------
Confidence 21 01111222333455555555554 369999999999999999999987755444211 1110
Q ss_pred CCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 185 VHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 185 ~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
..++...++||++++++||..|+..+++||....
T Consensus 148 -~~~~~~liRPLL~~~k~ei~~ya~~~~l~~~~D~ 181 (436)
T PRK10660 148 -PFAGTRLIRPLLARSREELEQYAQAHGLRWIEDD 181 (436)
T ss_pred -ccCCCcEeCCCccCCHHHHHHHHHHcCCCEEECC
Confidence 0123467899999999999999999999988766
No 210
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.58 E-value=1e-14 Score=145.49 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=93.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|++|+|||||+++|.... +. .. ....|.++ ..+...
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~------------------------~~-----~~---~~t~g~~~----~~~~~~ 51 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQ------------------------SV-----TT---IPTVGFNV----ETVTYK 51 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCC------------------------Cc-----cc---cCCcccce----EEEEEC
Confidence 45899999999999999999997510 00 00 00011111 223345
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH-HHHH---HcCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS-IIAH---LLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~-~~~~---~~~~~~iivviNK~D~~~ 478 (967)
+..+.++||||+++|...+...++.+|++|+|+|+++.. .+ ....+.+ ..+. ..++ ++++|.||+|+.+
T Consensus 52 ~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~-----s~-~~~~~~~~~~~~~~~~~~~-piilv~NK~Dl~~ 124 (168)
T cd04149 52 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD-----RI-DEARQELHRIINDREMRDA-LLLVFANKQDLPD 124 (168)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh-----hH-HHHHHHHHHHhcCHhhcCC-cEEEEEECcCCcc
Confidence 678999999999999877777789999999999998721 11 1222222 1221 1234 5999999999864
Q ss_pred cCHHHHHHHHHHHHHHHH--HcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAE--DIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~--~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .++ ++..++ ...-...+++++||++|.|+.++
T Consensus 125 ~~~--~~~----i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 125 AMK--PHE----IQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred CCC--HHH----HHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 211 122 222221 11111347899999999999874
No 211
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.58 E-value=2.7e-14 Score=144.49 Aligned_cols=153 Identities=20% Similarity=0.179 Sum_probs=100.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..+||+++|..++|||||+.++... .+ ..+....++.+.....+..
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~------------------------~~---------~~~~~~t~~~~~~~~~i~~ 50 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDG------------------------ST---------ESPYGYNMGIDYKTTTILL 50 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC------------------------CC---------CCCCCCcceeEEEEEEEEE
Confidence 35689999999999999999999851 11 1111112233332233333
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccC
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~ 478 (967)
++ ..+.+|||||+++|...+...++.+|++|||+|.++.. -.......+..+.. ....++|+|.||+|+..
T Consensus 51 ~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~------Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 51 DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRW------SFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHH------HHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 44 56789999999999887777779999999999998721 11112222222222 12345999999999965
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
..+. ..++.+.+.+..++ +++.+||++|.||+++.
T Consensus 125 ~~~v----~~~~~~~~a~~~~~---~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 125 KRQV----ATEQAQAYAERNGM---TFFEVSPLCNFNITESF 159 (189)
T ss_pred ccCC----CHHHHHHHHHHcCC---EEEEecCCCCCCHHHHH
Confidence 3221 12345566666665 89999999999999853
No 212
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.58 E-value=2.6e-14 Score=146.89 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=98.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|.+|+|||||+++|++.. +. .+....++++.....+..+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~------------------------~~---------~~~~~t~~~~~~~~~~~~~ 51 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT------------------------FS---------GSYITTIGVDFKIRTVEIN 51 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC------------------------CC---------CCcCccccceeEEEEEEEC
Confidence 46899999999999999999998611 10 0001112223322334433
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCc
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~ 479 (967)
+ ..+.||||||++.|.......++.+|++++|+|+++.. ......+.+..... ....++++|+||+|+.+.
T Consensus 52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~------s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 52 GERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE------SFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred CEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 3 46789999999998887777889999999999998721 11112222322222 233458999999999753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
... ..++...+.+..+. +++++||++|.|+.++.
T Consensus 126 ~~~----~~~~~~~~~~~~~~---~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 126 KVV----ETEDAYKFAGQMGI---SLFETSAKENINVEEMF 159 (199)
T ss_pred ccc----CHHHHHHHHHHcCC---EEEEEECCCCcCHHHHH
Confidence 221 11233445555554 79999999999999853
No 213
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.58 E-value=1.4e-14 Score=143.23 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=92.1
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++|++|+|||||+++|..... . +. . .|+......+...+..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-----------------------~------~~---~----~t~~~~~~~~~~~~~~ 44 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-----------------------V------TT---I----PTIGFNVETVTYKNLK 44 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-----------------------c------Cc---C----CccCcCeEEEEECCEE
Confidence 589999999999999999965110 0 00 0 0111122234455678
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHHH---cCCCeEEEEEecCCccCcCH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAHL---LRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~~---~~~~~iivviNK~D~~~~~~ 481 (967)
+.++||||+.+|...+...+..+|++|+|+|+++.. ......+.+. +... .+ .++++|+||+|+.+...
T Consensus 45 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~-~piiiv~nK~Dl~~~~~ 117 (158)
T cd04151 45 FQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD------RLGTAKEELHAMLEEEELKG-AVLLVFANKQDMPGALS 117 (158)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcC-CcEEEEEeCCCCCCCCC
Confidence 999999999998877777889999999999998710 0111122222 2221 23 45999999999975321
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..++...+. .......+.+++++||++|.|++++
T Consensus 118 --~~~i~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l 151 (158)
T cd04151 118 --EAEISEKLG--LSELKDRTWSIFKTSAIKGEGLDEG 151 (158)
T ss_pred --HHHHHHHhC--ccccCCCcEEEEEeeccCCCCHHHH
Confidence 112222110 0011112347999999999999984
No 214
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.58 E-value=1.2e-14 Score=144.42 Aligned_cols=148 Identities=21% Similarity=0.282 Sum_probs=92.1
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
+|+++|.+|+|||||+++|++..... ..+ ....|.+ ...+...+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~------------------------~~~------~~t~g~~----~~~~~~~~~~ 46 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS------------------------QII------VPTVGFN----VESFEKGNLS 46 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc------------------------cee------cCccccc----eEEEEECCEE
Confidence 58999999999999999998621000 000 0001222 2224456778
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHH-H-----HcCCCeEEEEEecCCccC
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIA-H-----LLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~-~-----~~~~~~iivviNK~D~~~ 478 (967)
+.++||||+.+|...+...+..+|++|+|+|+++ ... ......+..+ . ..++| +++|+||+|+.+
T Consensus 47 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~ 118 (162)
T cd04157 47 FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD-------RLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPD 118 (162)
T ss_pred EEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc-------HHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccC
Confidence 9999999999998888888899999999999987 211 1112222221 1 12444 999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... ..++...+ .+ ....-...+++++||++|.|++++
T Consensus 119 ~~~--~~~~~~~l-~~-~~~~~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 119 ALT--AVKITQLL-GL-ENIKDKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred CCC--HHHHHHHh-CC-ccccCceEEEEEeeCCCCCchHHH
Confidence 321 11111111 00 111112346899999999999984
No 215
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.58 E-value=1e-14 Score=175.74 Aligned_cols=146 Identities=23% Similarity=0.290 Sum_probs=103.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|++|+|||||+|+|++....+ ....|+|++.....+..++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v---------------------------------gn~pGvTve~k~g~~~~~~ 49 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRV---------------------------------GNWAGVTVERKEGQFSTTD 49 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcc---------------------------------CCCCCceEeeEEEEEEcCc
Confidence 3689999999999999999998721111 1125788887777788888
Q ss_pred ceEEEeeChhhHHHHH--------HHH--hh--cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEE
Q psy3751 404 RKFIIADTPGHEQYTR--------NMI--TG--ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAV 471 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~--------~~~--~~--~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivvi 471 (967)
.+++++||||+.++.. +.+ .. ...+|++++|+|+++ ... .......+..+|+| +++|+
T Consensus 50 ~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~-------ler--~l~l~~ql~e~giP-vIvVl 119 (772)
T PRK09554 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN-------LER--NLYLTLQLLELGIP-CIVAL 119 (772)
T ss_pred eEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCc-------chh--hHHHHHHHHHcCCC-EEEEE
Confidence 9999999999876532 111 11 247999999999987 211 12233345567877 89999
Q ss_pred ecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 472 NKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 472 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
||+|+.+... +..+++++.+.+|. |++|+||.+|+|++++.
T Consensus 120 NK~Dl~~~~~-----i~id~~~L~~~LG~---pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 120 NMLDIAEKQN-----IRIDIDALSARLGC---PVIPLVSTRGRGIEALK 160 (772)
T ss_pred EchhhhhccC-----cHHHHHHHHHHhCC---CEEEEEeecCCCHHHHH
Confidence 9999874322 22334555666775 89999999999999853
No 216
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.58 E-value=1.3e-14 Score=143.53 Aligned_cols=149 Identities=16% Similarity=0.216 Sum_probs=92.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
+||+++|..|+|||||+++|... . +. ...+ ..|.. ...+.....
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~--~----------------------~~-----~~~p---t~g~~----~~~~~~~~~ 44 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLG--E----------------------IV-----TTIP---TIGFN----VETVEYKNI 44 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--C----------------------Cc-----ccCC---CCCcc----eEEEEECCE
Confidence 47999999999999999999641 1 10 0000 01111 122444567
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHH--HcCCCeEEEEEecCCccCcCH
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAH--LLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~--~~~~~~iivviNK~D~~~~~~ 481 (967)
.+.++||||+..|...+...++.+|++|+|+|+++.. -..+..+.+. +.. ....+++++|.||+|+.+...
T Consensus 45 ~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 118 (159)
T cd04150 45 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS 118 (159)
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC
Confidence 8999999999998887777889999999999998711 1122222222 211 122355999999999865321
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. .++...+ .+..+.-..+.++++||++|.|++++
T Consensus 119 ~--~~i~~~~--~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 119 A--AEVTDKL--GLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred H--HHHHHHh--CccccCCCCEEEEEeeCCCCCCHHHH
Confidence 1 1222111 01111112346789999999999984
No 217
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.57 E-value=1.5e-14 Score=145.44 Aligned_cols=152 Identities=20% Similarity=0.214 Sum_probs=95.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+++|++|+|||||+++|+... +. . ...|+...+..+..+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~------------------------~~-----~-------~~~t~~~~~~~~~~~ 57 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGE------------------------VV-----H-------TSPTIGSNVEEIVYK 57 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC------------------------CC-----C-------cCCccccceEEEEEC
Confidence 35789999999999999999998511 00 0 011222222345556
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~ 480 (967)
+..+.++||||+..|.......+..+|++++|+|+++.. .......+...++... .-.++++++||+|+.+..
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~-----~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~ 132 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE-----RLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM 132 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH-----HHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC
Confidence 778999999999998888878889999999999998721 1111111111222211 124599999999987531
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. .+++.+.+. .......+++++++||++|.|++++
T Consensus 133 ~--~~~i~~~l~--~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 133 T--PAEISESLG--LTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred C--HHHHHHHhC--cccccCCceEEEecccCCCCCHHHH
Confidence 1 122222111 0011112347899999999999884
No 218
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=3.1e-14 Score=145.43 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=94.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|.+|+|||||+++|+...-.. .+....++.+.....+..+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~~~ 48 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLN--------------------------------GNFIATVGIDFRNKVVTVDGV 48 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc--------------------------------cCcCCcccceeEEEEEEECCE
Confidence 479999999999999999998621110 0000111112211122223
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~iivviNK~D~~~~~ 480 (967)
...+.||||||+.+|.......++.+|++|+|+|++... ...+....+..+.... -.++++|+||+|+....
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~------s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKA------SFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 346889999999998877777788999999999998711 0111222333333322 23599999999997432
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+. ..++.+.+.+.++. +++++||++|.|++++
T Consensus 123 ~~----~~~~~~~l~~~~~~---~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 123 VV----KREDGERLAKEYGV---PFMETSAKTGLNVELA 154 (191)
T ss_pred cc----CHHHHHHHHHHcCC---eEEEEeCCCCCCHHHH
Confidence 11 11233445555554 8999999999999985
No 219
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.57 E-value=4.4e-14 Score=142.63 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=97.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
+||+++|..++|||||+++++.. .| ..+....+..+.....+..++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~------------------------~f---------~~~~~~T~g~~~~~~~i~~~~~ 47 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEG------------------------EF---------DEDYIQTLGVNFMEKTISIRGT 47 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC------------------------CC---------CCCCCCccceEEEEEEEEECCE
Confidence 47999999999999999999861 11 011111122222223344444
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcC
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~ 480 (967)
..+.+|||+|++.|.......++.+|++++|+|.++.. ......+.+..+... ...+ |+|.||+|+....
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~------s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~ 120 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS------TLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH------HHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccc
Confidence 46789999999999877777789999999999998721 111122233333322 2233 6789999996321
Q ss_pred -HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 481 -QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 481 -~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
......+.++.+.+.+..+. +++++||++|.|++++.
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~---~~~e~SAk~g~~v~~lf 158 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMKA---PLIFCSTSHSINVQKIF 158 (182)
T ss_pred cchhhhhhHHHHHHHHHHcCC---EEEEEeCCCCCCHHHHH
Confidence 11111233455566666664 88999999999999863
No 220
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=2.7e-14 Score=165.47 Aligned_cols=144 Identities=26% Similarity=0.290 Sum_probs=105.0
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
.+|+++|++|+|||||+|+|++....+ .....|+|.+..+..+.+++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~--------------------------------v~~~~~~t~d~~~~~~~~~~~ 49 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI--------------------------------VADTPGVTRDRIYGEAEWLGR 49 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee--------------------------------eCCCCCCcccceEEEEEECCc
Confidence 479999999999999999998722111 011246777777777778888
Q ss_pred eEEEeeChhhHH--------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 405 KFIIADTPGHEQ--------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 405 ~~~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
.+.+|||||+.+ +...+..++..+|++|+|+|+.+ +......+....++..+.+ +|+|+||+|+
T Consensus 50 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~-------~~~~~~~~~~~~l~~~~~p-iilv~NK~D~ 121 (435)
T PRK00093 50 EFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRA-------GLTPADEEIAKILRKSNKP-VILVVNKVDG 121 (435)
T ss_pred EEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC-------CCCHHHHHHHHHHHHcCCc-EEEEEECccC
Confidence 999999999876 33345567789999999999998 6656556666666777766 9999999997
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+ ...++ ..+++. .++++||++|.|+.++
T Consensus 122 ~~~~~--------~~~~~-~~lg~~--~~~~iSa~~g~gv~~l 153 (435)
T PRK00093 122 PDEEA--------DAYEF-YSLGLG--EPYPISAEHGRGIGDL 153 (435)
T ss_pred ccchh--------hHHHH-HhcCCC--CCEEEEeeCCCCHHHH
Confidence 64211 11112 244553 4699999999999884
No 221
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.57 E-value=4.5e-14 Score=141.25 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=96.1
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..++|+++|++|+|||||+++|+... + .......++.+.....+..
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~ 51 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGL--F-------------------------------PPGQGATIGVDFMIKTVEI 51 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCC--C-------------------------------CCCCCCceeeEEEEEEEEE
Confidence 456899999999999999999998510 0 0001112233333333444
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-HHHHHHHHHH---cCCCeEEEEEecCC
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-TKRHSIIAHL---LRIKHIIIAVNKMD 475 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t~~~~~~~~~---~~~~~iivviNK~D 475 (967)
.+ ..+.++|+||+..|.......+..+|++++|+|+.+ ....+ ....+..++. .+++ +++|+||+|
T Consensus 52 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D 123 (169)
T cd04114 52 KGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC-------EESFRCLPEWLREIEQYANNKVI-TILVGNKID 123 (169)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcc
Confidence 44 457889999999998888888899999999999987 21111 1122222222 2344 788999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+..+. ..... +.+.+... .+++++||++|.|+.++
T Consensus 124 ~~~~~~i-~~~~~---~~~~~~~~---~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 124 LAERREV-SQQRA---EEFSDAQD---MYYLETSAKESDNVEKL 160 (169)
T ss_pred ccccccc-CHHHH---HHHHHHcC---CeEEEeeCCCCCCHHHH
Confidence 8753321 11121 22222222 47899999999999984
No 222
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.56 E-value=2.5e-14 Score=141.90 Aligned_cols=150 Identities=22% Similarity=0.193 Sum_probs=93.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
+||+++|.+|+|||||+++|++..-.. ..+...|.+.......+.....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-------------------------------DLAATIGVDFKVKTLTVDGKKV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-------------------------------ccCCcccceEEEEEEEECCEEE
Confidence 479999999999999999998621100 0011112222222122222235
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc---CCCeEEEEEecCCccCcCH
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL---RIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~---~~~~iivviNK~D~~~~~~ 481 (967)
.+.++||||++.|.......++.+|++++|+|+++.. .+. .....+...... .-.++++|+||+|+.....
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~~-~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~ 123 (161)
T cd01863 50 KLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRD-----TFT-NLETWLNELETYSTNNDIVKMLVGNKIDKENREV 123 (161)
T ss_pred EEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHH-----HHH-hHHHHHHHHHHhCCCCCCcEEEEEECCccccccc
Confidence 6889999999998877777788999999999998711 111 111122222221 1234889999999974321
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. .++...+.+..+ ++++++||++|.|++++
T Consensus 124 ~-----~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 124 T-----REEGLKFARKHN---MLFIETSAKTRDGVQQA 153 (161)
T ss_pred C-----HHHHHHHHHHcC---CEEEEEecCCCCCHHHH
Confidence 1 122334444444 48999999999999985
No 223
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.56 E-value=1e-14 Score=167.08 Aligned_cols=141 Identities=28% Similarity=0.309 Sum_probs=98.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|++|+|||||+|+|++....+ .....|.|.+.....+..+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~--------------------------------v~~~~gtT~d~~~~~i~~~ 261 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI--------------------------------VTDIAGTTRDVIEEHINLD 261 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc--------------------------------cCCCCCcccccEEEEEEEC
Confidence 34789999999999999999999732111 1123466777777777788
Q ss_pred CceEEEeeChhhHHHH--------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 403 KRKFIIADTPGHEQYT--------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
+..+.++||||+.++. ..+...+..+|++++|+|+++ ....+..+.+.. ..+ .++++|+||+
T Consensus 262 g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~-------~~s~~~~~~l~~--~~~-~piiiV~NK~ 331 (449)
T PRK05291 262 GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE-------PLTEEDDEILEE--LKD-KPVIVVLNKA 331 (449)
T ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC-------CCChhHHHHHHh--cCC-CCcEEEEEhh
Confidence 8899999999976432 234556789999999999987 332222222221 233 4589999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+.+..... .. ...+++++||++|.|++++.
T Consensus 332 DL~~~~~~~------------~~---~~~~~i~iSAktg~GI~~L~ 362 (449)
T PRK05291 332 DLTGEIDLE------------EE---NGKPVIRISAKTGEGIDELR 362 (449)
T ss_pred hccccchhh------------hc---cCCceEEEEeeCCCCHHHHH
Confidence 997532210 11 12478999999999999853
No 224
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=2.6e-14 Score=161.77 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=99.4
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
-+....|++||.+|||||||+|+|+...-.+ ....+.|++.....+.
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkI---------------------------------adypfTTl~P~lGvv~ 202 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKI---------------------------------ADYPFTTLVPNLGVVQ 202 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccc---------------------------------cccCcccccceEEEEE
Confidence 3455679999999999999999998731111 0113456666666677
Q ss_pred cCCceEEEeeChhhH-------HHHHHHHhhcccCCEEEEEEeCCCCCCCC-CCCchhhHHHHH-HHHH---------Hc
Q psy3751 401 TPKRKFIIADTPGHE-------QYTRNMITGASTADAVIILIDASKIKFNP-SVNLLTQTKRHS-IIAH---------LL 462 (967)
Q Consensus 401 ~~~~~~~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~~~~~~-~~g~~~~t~~~~-~~~~---------~~ 462 (967)
.++.+++|+||||.. ......++.+..+|++|+|||++..+... ...-.....+.+ .... .+
T Consensus 203 ~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l 282 (500)
T PRK12296 203 AGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDL 282 (500)
T ss_pred ECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhh
Confidence 778899999999932 12234556678899999999997511000 000011111111 1111 12
Q ss_pred CCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 463 RIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 463 ~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
.-+++|||+||+|+.+.. + +.+.+...++..++ +++++||+++.|++++..
T Consensus 283 ~~kP~IVVlNKiDL~da~-e----l~e~l~~~l~~~g~---~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 283 AERPRLVVLNKIDVPDAR-E----LAEFVRPELEARGW---PVFEVSAASREGLRELSF 333 (500)
T ss_pred cCCCEEEEEECccchhhH-H----HHHHHHHHHHHcCC---eEEEEECCCCCCHHHHHH
Confidence 224589999999997432 1 22223333444444 899999999999998643
No 225
>KOG1423|consensus
Probab=99.56 E-value=8.7e-15 Score=148.46 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=99.0
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+....++|+++|.||+|||||.|.|++ +++...+.+..+|+ .-....+
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig----------~kv~~vS~K~~TTr----------------------~~ilgi~ 115 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIG----------QKVSAVSRKVHTTR----------------------HRILGII 115 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhC----------Ccccccccccccee----------------------eeeeEEE
Confidence 456789999999999999999999998 33344444333322 2222336
Q ss_pred ecCCceEEEeeChh------hH------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeE
Q psy3751 400 NTPKRKFIIADTPG------HE------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHI 467 (967)
Q Consensus 400 ~~~~~~~~liDtpG------~~------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~i 467 (967)
..+..++.|+|||| |. .+..+...++..||.+++|+|+++.. ....++....+... ..+| -
T Consensus 116 ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr----~~l~p~vl~~l~~y--s~ip-s 188 (379)
T KOG1423|consen 116 TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR----TPLHPRVLHMLEEY--SKIP-S 188 (379)
T ss_pred ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc----CccChHHHHHHHHH--hcCC-c
Confidence 77889999999999 22 23345567788999999999999511 12223222222211 2345 5
Q ss_pred EEEEecCCccCcCHHHHHHHHHHH---------HHHHHHcC-------------Cc-cceEEeccccCCCccccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAY---------KKFAEDIH-------------FQ-NINTIPISALNGDNIISASN 521 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~---------~~~~~~~~-------------~~-~~~ii~iSa~~g~gi~~l~~ 521 (967)
|+|+||+|........+ ..++.+ .+..+++. +. --.+|++||++|+|++++++
T Consensus 189 ~lvmnkid~~k~k~~Ll-~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gikdlkq 264 (379)
T KOG1423|consen 189 ILVMNKIDKLKQKRLLL-NLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQ 264 (379)
T ss_pred eeeccchhcchhhhHHh-hhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHH
Confidence 78899999875321111 111110 11111111 10 01489999999999999763
No 226
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.56 E-value=2.1e-14 Score=142.38 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=92.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
+||+++|.+|+|||||+++|++.. +. +... ..+.+.....+..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~------------------------~~-----~~~~-----~t~~~~~~~~~~~~~~ 47 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH------------------------FV-----DEYD-----PTIEDSYRKQVVIDGE 47 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC------------------------Cc-----CCcC-----CcchheEEEEEEECCE
Confidence 589999999999999999998621 10 0000 000000011122233
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH-HHHHH--cCCCeEEEEEecCCccCc
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS-IIAHL--LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~-~~~~~--~~~~~iivviNK~D~~~~ 479 (967)
..+.+|||||+++|.......++.+|++++|+|.++.. .+.. ....+ .+... ..-.++++|+||+|+.+.
T Consensus 48 ~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~-----s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 48 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK-----SFED-IHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred EEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH-----HHHH-HHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 45778999999998887777888999999999998611 1111 11111 12221 112348999999999752
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. . ...+...+.+..+. +++++||++|.|++++
T Consensus 122 ~-~----~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 122 T-V----SSRQGQDLAKSYGI---PYIETSAKTRQGVEEA 153 (162)
T ss_pred e-e----cHHHHHHHHHHhCC---eEEEecCCCCCCHHHH
Confidence 1 1 12233444555554 7899999999999985
No 227
>PRK11058 GTPase HflX; Provisional
Probab=99.56 E-value=1.2e-14 Score=164.20 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=93.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
....+|+++|.+|+|||||+|+|++.... .....|.|++.....+.+
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~---------------------------------v~~~~~tTld~~~~~i~l 241 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVY---------------------------------AADQLFATLDPTLRRIDV 241 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcee---------------------------------eccCCCCCcCCceEEEEe
Confidence 35568999999999999999999862110 111235566666666666
Q ss_pred CCc-eEEEeeChhhHH--------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH---HHHHHHHHHcCCCeEEE
Q psy3751 402 PKR-KFIIADTPGHEQ--------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT---KRHSIIAHLLRIKHIII 469 (967)
Q Consensus 402 ~~~-~~~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t---~~~~~~~~~~~~~~iiv 469 (967)
.+. .+.++||||..+ -+..++..+..||++|+|+|++++.+ ..+. .+.+..+...++ ++|+
T Consensus 242 ~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~------~e~l~~v~~iL~el~~~~~-pvIi 314 (426)
T PRK11058 242 ADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRV------QENIEAVNTVLEEIDAHEI-PTLL 314 (426)
T ss_pred CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccH------HHHHHHHHHHHHHhccCCC-CEEE
Confidence 553 889999999622 12335566789999999999987211 1111 122222222234 4899
Q ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 470 AVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 470 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+||+|+.+..... + .. ...+. ..++++||++|.|++++
T Consensus 315 V~NKiDL~~~~~~~---~----~~--~~~~~--~~~v~ISAktG~GIdeL 353 (426)
T PRK11058 315 VMNKIDMLDDFEPR---I----DR--DEENK--PIRVWLSAQTGAGIPLL 353 (426)
T ss_pred EEEcccCCCchhHH---H----HH--HhcCC--CceEEEeCCCCCCHHHH
Confidence 99999997532111 1 00 11232 12588999999999985
No 228
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.56 E-value=1.9e-14 Score=130.44 Aligned_cols=99 Identities=24% Similarity=0.372 Sum_probs=90.2
Q ss_pred ccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccC
Q psy3751 640 SLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDN 718 (967)
Q Consensus 640 ~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~ 718 (967)
+++.|+|++.++++ .||++|+++++|+|+.++.|+|..|.+++|.++....+++.|++||.+.|+|.+++|+++++|.+
T Consensus 2 ~~~~f~a~i~~l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~~~ 81 (102)
T cd01513 2 AVDKFVAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKPVALETFSE 81 (102)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEEECCceEEEEhhh
Confidence 46889999988886 79999999999999999999999999999998766667899999999999999999999999999
Q ss_pred ccCCccceeecccccccceEEE
Q psy3751 719 IRSTGSFILIDEITFQTVAAVY 740 (967)
Q Consensus 719 ~~~~grfil~d~~~~~~~~~~~ 740 (967)
++.+|||+|||. +.|+|.|.
T Consensus 82 ~~~~grfilr~~--~~tvg~G~ 101 (102)
T cd01513 82 NQEGGRFALRDG--GRTVGAGL 101 (102)
T ss_pred CCCcccEEEEeC--CCEEEEEE
Confidence 999999999984 57777665
No 229
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.56 E-value=5.8e-14 Score=143.57 Aligned_cols=149 Identities=15% Similarity=0.065 Sum_probs=87.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
++|+++|.+|+|||||++++++. .|. .+....++.+.....+..++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~------------------------~f~---------~~~~pt~~~~~~~~~i~~~~~ 47 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQ------------------------EFP---------EEYIPTEHRRLYRPAVVLSGR 47 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcC------------------------CCC---------cccCCccccccceeEEEECCE
Confidence 47999999999999999999861 110 00111111121111233344
Q ss_pred -ceEEEeeChhhHHH--------HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-HHHHHHHHHH------cCCCeE
Q psy3751 404 -RKFIIADTPGHEQY--------TRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-TKRHSIIAHL------LRIKHI 467 (967)
Q Consensus 404 -~~~~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t~~~~~~~~~------~~~~~i 467 (967)
..+.+|||||+.+| .......+..+|++|+|+|+++ ...-+ ....+..... .++ ++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~-------~~S~~~~~~~~~~i~~~~~~~~~~~-pi 119 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS-------PDSFHYVKLLRQQILETRPAGNKEP-PI 119 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcccCCCCC-CE
Confidence 46789999996543 2223345688999999999987 21111 1111111111 234 49
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+|.||+|+....... .++++.+.++. .+++++++||++|.|++++.
T Consensus 120 iivgNK~Dl~~~~~~~----~~~~~~~~~~~--~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 120 VVVGNKRDQQRHRFAP----RHVLSVLVRKS--WKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred EEEEECcccccccccc----HHHHHHHHHHh--cCCcEEEecCCCCCCHHHHH
Confidence 9999999996532111 11233333322 13489999999999999963
No 230
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=2.9e-14 Score=159.32 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=96.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
-...|+|||.+|||||||+|+|+...-.+ + ...+.|.......+...
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~v-----------s----------------------~~p~TT~~p~~Giv~~~ 204 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKV-----------A----------------------DYPFTTLVPNLGVVRVD 204 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccc-----------c----------------------CCCCCccCcEEEEEEeC
Confidence 34459999999999999999998632111 1 11234444444445555
Q ss_pred C-ceEEEeeChhhHH-------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEE
Q psy3751 403 K-RKFIIADTPGHEQ-------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIA 470 (967)
Q Consensus 403 ~-~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivv 470 (967)
+ .+++|+||||..+ ....+++.+..+|++++|||++.... .....+....+..+.. +.-+++|+|
T Consensus 205 ~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~---~d~~e~~~~l~~eL~~~~~~L~~kP~IlV 281 (390)
T PRK12298 205 DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG---SDPVENARIIINELEKYSPKLAEKPRWLV 281 (390)
T ss_pred CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc---cChHHHHHHHHHHHHhhhhhhcCCCEEEE
Confidence 4 4699999999421 44556677899999999999873100 0122222222222222 122458889
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+||+|+.+.. ++.+.++.+.+.+++ ..+++++||+++.|++++.
T Consensus 282 lNKiDl~~~~-----el~~~l~~l~~~~~~-~~~Vi~ISA~tg~GIdeLl 325 (390)
T PRK12298 282 FNKIDLLDEE-----EAEERAKAIVEALGW-EGPVYLISAASGLGVKELC 325 (390)
T ss_pred EeCCccCChH-----HHHHHHHHHHHHhCC-CCCEEEEECCCCcCHHHHH
Confidence 9999997532 122333444444443 1268999999999999863
No 231
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.56 E-value=2.8e-14 Score=144.07 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=94.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..++|+++|..++|||||+++|... . +. .. . -|+...+..++.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~--~----------------------~~-----~~-----~--pt~g~~~~~~~~ 58 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLG--E----------------------IV-----TT-----I--PTIGFNVETVEY 58 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC--C----------------------Cc-----cc-----c--CCcceeEEEEEE
Confidence 34479999999999999999999741 0 00 00 0 111112223455
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHH--HcCCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAH--LLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~--~~~~~~iivviNK~D~~~ 478 (967)
++..+.++|+||++.|...+...++.+|++|+|+|+++.. .+ ...++.+. ++. .....++++|.||+|+.+
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~-----s~-~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-----RV-VEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH-----HH-HHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 6778999999999999888777889999999999998721 11 11121121 111 112345999999999875
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCc-----cceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQ-----NINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~-----~~~ii~iSa~~g~gi~~l 519 (967)
..+ .++ +.+.+++. ...++++||++|+|+.+.
T Consensus 133 ~~~--~~~-------~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 133 AMN--AAE-------ITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred CCC--HHH-------HHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 432 112 22223332 235678999999999984
No 232
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.56 E-value=2.5e-14 Score=144.89 Aligned_cols=153 Identities=18% Similarity=0.259 Sum_probs=91.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee---e
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF---N 400 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~---~ 400 (967)
.++|+++|++|+|||||++++++.... ...+ ..|.+. ....+ .
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-----------------------------~~~~---t~~~~~--~~~~~~~~~ 48 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-----------------------------NTVP---TKGFNT--EKIKVSLGN 48 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-----------------------------CcCC---ccccce--eEEEeeccC
Confidence 478999999999999999999862110 0000 012111 11112 2
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC-CCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK-FNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~-~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
..+..+.++||||++.|...+...++.+|++|+|+|+++.. ++ .......+........+.| +++|+||+|+.+.
T Consensus 49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~---~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~ 124 (183)
T cd04152 49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERME---EAKTELHKITRFSENQGVP-VLVLANKQDLPNA 124 (183)
T ss_pred CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHH---HHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc
Confidence 23467899999999988777767788999999999998711 00 0000111111112223444 9999999998642
Q ss_pred CHHHHHHHHHHHHHHHH--HcC-CccceEEeccccCCCcccccc
Q psy3751 480 NQIFYKRIVYAYKKFAE--DIH-FQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~--~~~-~~~~~ii~iSa~~g~gi~~l~ 520 (967)
.. .+++..++. ..+ ....+++++||++|.|++++.
T Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 162 (183)
T cd04152 125 LS------VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGL 162 (183)
T ss_pred CC------HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHH
Confidence 11 111222221 111 123578999999999999863
No 233
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.56 E-value=5.2e-14 Score=140.34 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=93.2
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
+||+++|+.|+|||||+++|.+.. +. ...+. .....++.. .+...+.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~------------------------~~-----~~~~~-~~~~~~~~~---~~~~~~~ 47 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEE------------------------FP-----ENVPR-VLPEITIPA---DVTPERV 47 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc------------------------CC-----ccCCC-cccceEeee---eecCCeE
Confidence 379999999999999999998621 10 00000 000112211 1222446
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH--HHHHHHHHHc-CCCeEEEEEecCCccCcCH
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT--KRHSIIAHLL-RIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t--~~~~~~~~~~-~~~~iivviNK~D~~~~~~ 481 (967)
.+.+|||||+..+...+...+..+|++++|+|+++ ...-+. ...+...+.. .-.++++|+||+|+.+...
T Consensus 48 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~-------~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 48 PTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDR-------PSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred EEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 78999999998887777777899999999999987 221111 1122223322 2245999999999976432
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. ...+.+..+.+.+.. ..+++++||++|.|++++
T Consensus 121 ~~--~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~l 155 (166)
T cd01893 121 QA--GLEEEMLPIMNEFRE-IETCVECSAKTLINVSEV 155 (166)
T ss_pred hh--HHHHHHHHHHHHHhc-ccEEEEeccccccCHHHH
Confidence 10 112223333333321 127899999999999985
No 234
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.56 E-value=2.8e-14 Score=141.09 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=94.3
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++|++|+|||||++++++..-. + ...|+......+...+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~----------------------------------~--~~~t~~~~~~~~~~~~~~ 44 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV----------------------------------T--TIPTIGFNVETVEYKNVS 44 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC----------------------------------C--CCCCcCcceEEEEECCEE
Confidence 5899999999999999999872100 0 001111222234445678
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCccCcCHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~~~~~~ 482 (967)
+.++|+||+..|.......+..+|++++|+|++.+. ........+..... ..-.++++|+||+|+.....
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~------~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~- 117 (158)
T cd00878 45 FTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE------RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS- 117 (158)
T ss_pred EEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC-
Confidence 999999999988777777778999999999999721 11222233222211 12244999999999976431
Q ss_pred HHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+++.+.+.... ......+++++||++|.|++++
T Consensus 118 -~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 118 -VSELIEKLGLEK--ILGRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred -HHHHHHhhChhh--ccCCcEEEEEeeCCCCCCHHHH
Confidence 122222221110 1223568999999999999984
No 235
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.56 E-value=1.6e-14 Score=143.71 Aligned_cols=148 Identities=19% Similarity=0.132 Sum_probs=91.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
.||+++|.+|+|||||+++|++..-.. +..+ .+ .+.....+..+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~----------------------------~~~~-----t~-~~~~~~~~~~~~~ 46 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD----------------------------DYDP-----TI-EDSYRKQIEIDGE 46 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc----------------------------ccCC-----ch-hhhEEEEEEECCE
Confidence 379999999999999999998622100 0000 00 00001112222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHHHcC--CCeEEEEEecCCccCc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAHLLR--IKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~~~~--~~~iivviNK~D~~~~ 479 (967)
...+.++||||+++|.......+..+|++++|+|+++.. .. ........ +..... -.++|+|.||+|+.+.
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----s~-~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ-----SF-EEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 356789999999998877777789999999999998721 01 11111111 122211 2358999999998753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... ..+....+.+..+ .+++++||++|.|++++
T Consensus 121 ~~~----~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 121 RVV----STEEGKELARQWG---CPFLETSAKERVNVDEA 153 (164)
T ss_pred ceE----cHHHHHHHHHHcC---CEEEEeecCCCCCHHHH
Confidence 211 1122334455554 48999999999999985
No 236
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.55 E-value=2.1e-14 Score=142.63 Aligned_cols=147 Identities=15% Similarity=0.095 Sum_probs=91.4
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
++|+++|.+|+|||||++++.... +. .... . .+.+.....+..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~------------------------~~-----~~~~----~-t~~~~~~~~~~~~~~ 47 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI------------------------FV-----EKYD----P-TIEDSYRKQIEVDGQ 47 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC------------------------CC-----cccC----C-chhhhEEEEEEECCE
Confidence 589999999999999999998621 10 0000 0 00000011122333
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecCCccC
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~D~~~ 478 (967)
..+.+|||||+++|.......++.+|++++|+|.++.. . .......+..... .+. ++|+|+||+|+.+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~-----s-~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~ 120 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS-----S-FNDLQDLREQILRVKDTENV-PMVLVGNKCDLED 120 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHH-----H-HHHHHHHHHHHHHhcCCCCC-CEEEEEECccccc
Confidence 45778999999998777767788999999999998711 0 1112222222221 134 4899999999875
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+. ..++...+.+.++ .+++++||++|.|+.++
T Consensus 121 ~~~~----~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 121 ERVV----SREEGQALARQWG---CPFYETSAKSKINVDEV 154 (163)
T ss_pred ccee----cHHHHHHHHHHcC---CeEEEecCCCCCCHHHH
Confidence 3221 1122333444454 48999999999999985
No 237
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.55 E-value=3.6e-14 Score=142.14 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=92.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|++|+|||||+++++... +..+....++.+.....+..++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~---------------------------------~~~~~~~t~~~~~~~~~~~~~~ 48 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR---------------------------------FPERTEATIGVDFRERTVEIDG 48 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC---------------------------------CCCccccceeEEEEEEEEEECC
Confidence 4789999999999999999998511 0111112223333333344444
Q ss_pred --ceEEEeeChhhHHHHHH-HHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc---CCCeEEEEEecCCcc
Q psy3751 404 --RKFIIADTPGHEQYTRN-MITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL---RIKHIIIAVNKMDLI 477 (967)
Q Consensus 404 --~~~~liDtpG~~~~~~~-~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~---~~~~iivviNK~D~~ 477 (967)
..+.+|||||+++|... ....++.+|++++|+|++++. ........+..+... .-.++|+|.||+|+.
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMA------SFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHH------HHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 57889999999988754 444568899999999998721 111122233223222 123499999999987
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccC---CCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALN---GDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~---g~gi~~l 519 (967)
+..+.. .++.+.+.+..+ .+++++||++ +.|+.++
T Consensus 123 ~~~~~~----~~~~~~~~~~~~---~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 123 EQIQVP----TDLAQRFADAHS---MPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred hhcCCC----HHHHHHHHHHcC---CcEEEEeccCCcCCCCHHHH
Confidence 532211 122233444444 4889999999 6666653
No 238
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=3.1e-14 Score=155.93 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=96.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+-...|++||.+|||||||+++|+...-.+ ....+.|++.....+.+
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~v---------------------------------a~ypfTT~~p~~G~v~~ 202 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKI---------------------------------ADYPFTTLHPNLGVVRV 202 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCcc---------------------------------CCCCCceeCceEEEEEe
Confidence 445569999999999999999998632111 00123466555555665
Q ss_pred -CCceEEEeeChhhH-------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEE
Q psy3751 402 -PKRKFIIADTPGHE-------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIII 469 (967)
Q Consensus 402 -~~~~~~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iiv 469 (967)
++.+++++|+||.- .+....++.+..+|++|+|||+++.. ...+.......+.. +.-+++|+
T Consensus 203 ~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~------s~e~~~~~~~EL~~~~~~L~~kp~II 276 (335)
T PRK12299 203 DDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD------PVEDYKTIRNELEKYSPELADKPRIL 276 (335)
T ss_pred CCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC------CHHHHHHHHHHHHHhhhhcccCCeEE
Confidence 45689999999942 24455666778899999999998621 11112222222221 22245899
Q ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 470 AVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 470 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+||+|+.+..+. . .+..+.+.+..+ .+++++||++|+|++++
T Consensus 277 V~NKiDL~~~~~~-~---~~~~~~~~~~~~---~~i~~iSAktg~GI~eL 319 (335)
T PRK12299 277 VLNKIDLLDEEEE-R---EKRAALELAALG---GPVFLISAVTGEGLDEL 319 (335)
T ss_pred EEECcccCCchhH-H---HHHHHHHHHhcC---CCEEEEEcCCCCCHHHH
Confidence 9999999754321 1 112222333333 47899999999999985
No 239
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.55 E-value=3.6e-14 Score=144.95 Aligned_cols=148 Identities=20% Similarity=0.173 Sum_probs=94.7
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+++|+.|+|||||+++|.+.. +. . ...|+......+..+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~------------------------~~--~----------~~~T~~~~~~~i~~~ 61 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDR------------------------LA--Q----------HVPTLHPTSEELTIG 61 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC------------------------Cc--c----------cCCccCcceEEEEEC
Confidence 45789999999999999999998611 00 0 001122222345556
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH----HcCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH----LLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~----~~~~~~iivviNK~D~~~ 478 (967)
+..+.++|+||+.++...+...+..+|++++|+|+++.. ......+.+.... ..+. ++++|+||+|+..
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~------s~~~~~~~~~~i~~~~~~~~~-pvivv~NK~Dl~~ 134 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE------RFQESKEELDSLLSDEELANV-PFLILGNKIDLPG 134 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH------HHHHHHHHHHHHHcCccccCC-CEEEEEeCCCCCC
Confidence 778999999999998877777789999999999998721 1111222222211 1234 4899999999864
Q ss_pred cCHHHHHHHHHHHHHHHHHc-------------CCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDI-------------HFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~-------------~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .++ ++..+... .....+++++||++|+|++++
T Consensus 135 ~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~ 182 (190)
T cd00879 135 AVS--EEE----LRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEA 182 (190)
T ss_pred CcC--HHH----HHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHH
Confidence 211 122 22233211 112357899999999999984
No 240
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.55 E-value=5.5e-14 Score=170.85 Aligned_cols=149 Identities=24% Similarity=0.281 Sum_probs=110.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
......+|+|+|++|+|||||+|+|++....+ .+...|+|.+......
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i--------------------------------v~~~pGvT~d~~~~~~ 318 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAV--------------------------------VEDTPGVTRDRVSYDA 318 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCcee--------------------------------ecCCCCeeEEEEEEEE
Confidence 44556789999999999999999998721111 1123578888777778
Q ss_pred ecCCceEEEeeChhhH--------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEE
Q psy3751 400 NTPKRKFIIADTPGHE--------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAV 471 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivvi 471 (967)
++++..+.+|||||.. .+...+..++..||++|+|+|+++ ++.....+.+..++..+.| +|+|+
T Consensus 319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~-------~~~~~d~~i~~~Lr~~~~p-vIlV~ 390 (712)
T PRK09518 319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV-------GLTSTDERIVRMLRRAGKP-VVLAV 390 (712)
T ss_pred EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC-------CCCHHHHHHHHHHHhcCCC-EEEEE
Confidence 8888899999999954 356667778899999999999988 6666666666666767766 99999
Q ss_pred ecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 472 NKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 472 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
||+|+...... ...+ ..+++. ..+++||++|.|+.++
T Consensus 391 NK~D~~~~~~~--------~~~~-~~lg~~--~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 391 NKIDDQASEYD--------AAEF-WKLGLG--EPYPISAMHGRGVGDL 427 (712)
T ss_pred ECcccccchhh--------HHHH-HHcCCC--CeEEEECCCCCCchHH
Confidence 99998642111 1111 123543 3479999999999985
No 241
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.55 E-value=4.9e-14 Score=144.34 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=93.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
+||+++|.+|+|||||+++|+... +.. + +....+..+.....+..++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~------------------------~~~----~----~~~~t~~~~~~~~~~~~~~~ 48 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR------------------------FLV----G----PYQNTIGAAFVAKRMVVGER 48 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------------------------cCC----c----CcccceeeEEEEEEEEECCE
Confidence 479999999999999999998611 100 0 0000111111112234444
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcC
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~ 480 (967)
..+.+|||||.+.|.......++.+|++++|+|.++.. ........+..+... +. ++++|+||+|+.+..
T Consensus 49 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~------s~~~~~~~~~~i~~~~~~~-piilv~nK~Dl~~~~ 121 (193)
T cd04118 49 VVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSS------SFERAKFWVKELQNLEEHC-KIYLCGTKSDLIEQD 121 (193)
T ss_pred EEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHhcCCCC-CEEEEEEcccccccc
Confidence 35669999999887666666678999999999998711 011112223333322 34 499999999986532
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
.........++..+.+.++. +++++||++|.|++++.
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 122 RSLRQVDFHDVQDFADEIKA---QHFETSSKTGQNVDELF 158 (193)
T ss_pred cccCccCHHHHHHHHHHcCC---eEEEEeCCCCCCHHHHH
Confidence 11001111234455555554 78999999999999853
No 242
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.54 E-value=1.9e-14 Score=143.90 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=93.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++|..++|||||+++|.+.. +. . ...|+...+..++..+..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~------------------------~~-----~-------~~~T~~~~~~~~~~~~~~ 44 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE------------------------FM-----Q-------PIPTIGFNVETVEYKNLK 44 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC------------------------CC-----C-------cCCcCceeEEEEEECCEE
Confidence 58999999999999999998620 00 0 011222222234556788
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HH--cCCCeEEEEEecCCccCcCHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HL--LRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~--~~~~~iivviNK~D~~~~~~~ 482 (967)
+.++||||+.++...+...+..+|++++|+|+++.. .+ ....+.+... .. ..-.++++|.||+|+.+...
T Consensus 45 i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~- 117 (169)
T cd04158 45 FTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD-----RV-SEAHSELAKLLTEKELRDALLLIFANKQDVAGALS- 117 (169)
T ss_pred EEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH-----HH-HHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCC-
Confidence 999999999988877777889999999999998721 11 1222222222 11 22245999999999864311
Q ss_pred HHHHHHHHHHHHHHHcC--C-ccceEEeccccCCCccccc
Q psy3751 483 FYKRIVYAYKKFAEDIH--F-QNINTIPISALNGDNIISA 519 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~--~-~~~~ii~iSa~~g~gi~~l 519 (967)
.+ +++.+++..+ . ....++++||++|.|+.++
T Consensus 118 -~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 118 -VE----EMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred -HH----HHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 11 1222322111 1 1246889999999999984
No 243
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.54 E-value=3.2e-14 Score=122.74 Aligned_cols=81 Identities=35% Similarity=0.519 Sum_probs=75.6
Q ss_pred CceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCC
Q psy3751 548 PLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDI 625 (967)
Q Consensus 548 ~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i 625 (967)
||+|+|+++|+.. .| ++++|+|++|++++||+|.+.|++..++|++|++++.++++|.|||+|+++|++ ..++
T Consensus 1 p~r~~V~~v~~~~-~g----~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v 75 (83)
T cd03698 1 PFRLPISDKYKDQ-GG----TVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDI 75 (83)
T ss_pred CeEEEEEeEEEcC-CC----cEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHC
Confidence 7999999999877 65 899999999999999999999999999999999999999999999999999985 4589
Q ss_pred CCCccccc
Q psy3751 626 SRGNMLVS 633 (967)
Q Consensus 626 ~~G~vl~~ 633 (967)
++||+|++
T Consensus 76 ~~G~vl~~ 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEeC
Confidence 99999974
No 244
>PLN03118 Rab family protein; Provisional
Probab=99.54 E-value=1e-13 Score=144.00 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=96.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..+..+||+++|++|+|||||+++|++.. +. +.....+.+.....+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~------------------------~~----------~~~~t~~~~~~~~~~ 55 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSS------------------------VE----------DLAPTIGVDFKIKQL 55 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCC------------------------CC----------CcCCCceeEEEEEEE
Confidence 34456899999999999999999998621 00 000111222222223
Q ss_pred ecC--CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHH-HHH-HHHHH----cCCCeEEEEE
Q psy3751 400 NTP--KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK-RHS-IIAHL----LRIKHIIIAV 471 (967)
Q Consensus 400 ~~~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~-~~~-~~~~~----~~~~~iivvi 471 (967)
..+ ...+.|+||||+++|.......++.+|++|+|+|+++ ...-+.. +.+ ..... .+. ++++|+
T Consensus 56 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~-------~~sf~~~~~~~~~~~~~~~~~~~~-~~ilv~ 127 (211)
T PLN03118 56 TVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR-------RETFTNLSDVWGKEVELYSTNQDC-VKMLVG 127 (211)
T ss_pred EECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHhcCCCCC-CEEEEE
Confidence 333 3578899999999998877788899999999999987 1111111 111 11111 123 478899
Q ss_pred ecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 472 NKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 472 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
||+|+....+.. .++...+.+..+. +++++||++|.|++++.
T Consensus 128 NK~Dl~~~~~i~----~~~~~~~~~~~~~---~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 128 NKVDRESERDVS----REEGMALAKEHGC---LFLECSAKTRENVEQCF 169 (211)
T ss_pred ECccccccCccC----HHHHHHHHHHcCC---EEEEEeCCCCCCHHHHH
Confidence 999997532211 1222334444444 78999999999999863
No 245
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.54 E-value=7e-14 Score=139.29 Aligned_cols=149 Identities=19% Similarity=0.143 Sum_probs=91.4
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
++|+++|.+|+|||||++++++.. +.-.. .... +.+. .....+.....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~------------------------f~~~~-~~t~------~~~~-~~~~~~~~~~~ 49 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT------------------------FRESY-IPTI------EDTY-RQVISCSKNIC 49 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC------------------------CCCCc-CCcc------hheE-EEEEEECCEEE
Confidence 689999999999999999998621 10000 0000 0000 00111222335
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH------cCCCeEEEEEecCCccC
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL------LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~------~~~~~iivviNK~D~~~ 478 (967)
.+.++||||+++|.......++.+|++|+|+|.++.. ........+..... .++| +++|.||+|+.+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~------s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~ 122 (165)
T cd04140 50 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQ------SLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESH 122 (165)
T ss_pred EEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccc
Confidence 6889999999988776666778999999999998721 11112223322322 2344 899999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+... ++...+....+ .+++++||++|.|++++
T Consensus 123 ~~~v~~----~~~~~~~~~~~---~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 123 KREVSS----NEGAACATEWN---CAFMETSAKTNHNVQEL 156 (165)
T ss_pred cCeecH----HHHHHHHHHhC---CcEEEeecCCCCCHHHH
Confidence 322111 11222333344 37899999999999984
No 246
>KOG0098|consensus
Probab=99.54 E-value=3.1e-14 Score=134.02 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=111.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+|++++|..++|||.|+-+++.+ .| ..-....+.++.+...+..+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~k------------------------rF---------~~~hd~TiGvefg~r~~~id 51 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDK------------------------RF---------QPVHDLTIGVEFGARMVTID 51 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhcc------------------------Cc---------cccccceeeeeeceeEEEEc
Confidence 5689999999999999999999851 11 11122345667777777777
Q ss_pred Cc--eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHHHHHHc---CCCeEEEEEecCCc
Q psy3751 403 KR--KFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSIIAHLL---RIKHIIIAVNKMDL 476 (967)
Q Consensus 403 ~~--~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~~~~~~---~~~~iivviNK~D~ 476 (967)
++ ++++|||.||+.|..-+-+.++.|-++|||.|.+. ..| . ....++.-+++. +.. ++++.||+|+
T Consensus 52 ~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF----~---hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL 123 (216)
T KOG0098|consen 52 GKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESF----N---HLTSWLEDARQHSNENMV-IMLIGNKSDL 123 (216)
T ss_pred CceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhH----H---HHHHHHHHHHHhcCCCcE-EEEEcchhhh
Confidence 65 56899999999999999999999999999999987 222 1 122233333333 333 7888999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
....+ --.++-+.+.++.|+ .++.+||++++|+++..
T Consensus 124 ~~rR~----Vs~EEGeaFA~ehgL---ifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 124 EARRE----VSKEEGEAFAREHGL---IFMETSAKTAENVEEAF 160 (216)
T ss_pred hcccc----ccHHHHHHHHHHcCc---eeehhhhhhhhhHHHHH
Confidence 86432 234566778888887 88999999999999853
No 247
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.54 E-value=7.4e-14 Score=147.93 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=113.2
Q ss_pred HHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhh
Q psy3751 28 HIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIM 107 (967)
Q Consensus 28 ~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~ 107 (967)
+.++.+++.+++++|+||||+||+++++++.+. +.++.++|+|++...++..+.++++++++|++++++..+....
T Consensus 3 ~~l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~~~ 78 (252)
T TIGR00268 3 ENLRNFLKEFKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDKMIN 78 (252)
T ss_pred HHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHHHH
Confidence 456778888899999999999999999999987 5579999999987667788999999999999999987754322
Q ss_pred hcccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHh-hhccccccccccCCCCCCCCCCccccccccccCC
Q psy3751 108 KGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKA-RAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVH 186 (967)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~-R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 186 (967)
. ........|..|.......+.+.++++|.+.+++|++.||-.. |..+....
T Consensus 79 ~-~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~-------------------------- 131 (252)
T TIGR00268 79 P-FRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVK-------------------------- 131 (252)
T ss_pred H-HHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHH--------------------------
Confidence 1 1111112233333333445667788899999999999998542 11000000
Q ss_pred CCCceEEeeCCC--CcHHHHHHHHHHcCCCCC
Q psy3751 187 PGENIRVFPISN--WTELDIWQYIEREKIILP 216 (967)
Q Consensus 187 ~~~~~~i~Pl~~--wt~~dV~~yi~~~~lp~~ 216 (967)
. ...++|+.+ |+++||++|.++.|+|+.
T Consensus 132 ~--~~~~~PL~~~~l~K~eIr~la~~~gl~~~ 161 (252)
T TIGR00268 132 E--FNGVSPWAEFGITKKEIREIAKSLGISFP 161 (252)
T ss_pred H--cCCCCcchhcCCCHHHHHHHHHHcCCCcc
Confidence 0 011389975 899999999999999865
No 248
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.54 E-value=6.1e-14 Score=140.91 Aligned_cols=148 Identities=19% Similarity=0.252 Sum_probs=95.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
...+.++|+++|++|+|||||+++|.+..-. ......|.+ ...+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~--------------------------------~~~~t~g~~----~~~i 53 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS--------------------------------HITPTQGFN----IKTV 53 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc--------------------------------ccCCCCCcc----eEEE
Confidence 3445789999999999999999999862100 000011222 2234
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH----HHHcCCCeEEEEEecCC
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSII----AHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~----~~~~~~~~iivviNK~D 475 (967)
..++..+.++|+||+..+...+...+..+|++++|+|+.+. .........+.. ....++| +++++||+|
T Consensus 54 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 126 (173)
T cd04155 54 QSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADK------KRLEEAGAELVELLEEEKLAGVP-VLVFANKQD 126 (173)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCH------HHHHHHHHHHHHHHhChhhcCCC-EEEEEECCC
Confidence 45577899999999998877777778899999999999861 111112222211 1223445 899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCC-----ccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHF-----QNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~ii~iSa~~g~gi~~l 519 (967)
+.+..+ .+++ .+.++. ...+++++||++|+|++++
T Consensus 127 ~~~~~~--~~~i-------~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 127 LATAAP--AEEI-------AEALNLHDLRDRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred CccCCC--HHHH-------HHHcCCcccCCCeEEEEEeECCCCCCHHHH
Confidence 875321 1222 222232 2346789999999999884
No 249
>KOG0094|consensus
Probab=99.54 E-value=1.3e-13 Score=131.09 Aligned_cols=151 Identities=21% Similarity=0.281 Sum_probs=109.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...||+++|..++||||||+++.+ +.|+ ..-...|.+|+-...+...
T Consensus 21 k~~KlVflGdqsVGKTslItRf~y------------------------d~fd---------~~YqATIGiDFlskt~~l~ 67 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMY------------------------DKFD---------NTYQATIGIDFLSKTMYLE 67 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHH------------------------hhhc---------ccccceeeeEEEEEEEEEc
Confidence 448999999999999999999998 2222 1222345666666666666
Q ss_pred Cc--eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc-CC--CeEEEEEecCCcc
Q psy3751 403 KR--KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL-RI--KHIIIAVNKMDLI 477 (967)
Q Consensus 403 ~~--~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~-~~--~~iivviNK~D~~ 477 (967)
++ ++.+|||+|+++|....-+.++.+.++|+|.|.++- .-..+|...+.-+... |- .-+++|.||-||+
T Consensus 68 d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~------~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 68 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR------NSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred CcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc------chHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 64 567999999999999999999999999999999981 2234555555444433 32 3367789999999
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+...++ -....++++. .|+.+||+.|.||..+
T Consensus 142 dkrqvs~eE----g~~kAkel~a---~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 142 DKRQVSIEE----GERKAKELNA---EFIETSAKAGENVKQL 176 (221)
T ss_pred chhhhhHHH----HHHHHHHhCc---EEEEecccCCCCHHHH
Confidence 765432222 2244556664 8899999999999975
No 250
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.54 E-value=2.8e-14 Score=142.02 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=92.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|.+|+|||||+++++.. ... +.. .. .+.+.....+..+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~---------------------------~~~----~~-t~~~~~~~~~~~~~~ 47 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFV---------------------------EKY----DP-TIEDSYRKQVEVDGQ 47 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCC---------------------------ccc----CC-cchheEEEEEEECCE
Confidence 58999999999999999999851 110 000 00 0000001123333
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HH---cCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HL---LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~---~~~~~iivviNK~D~~~ 478 (967)
...+.++||||++.|.......++.+|++++|+|.++.. .+ ....+.+... .. .++| +++|+||+|+.+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-----s~-~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 120 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS-----TF-NDLQDLREQILRVKDTEDVP-MILVGNKCDLED 120 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCCC-EEEEEECCcchh
Confidence 345679999999998887777889999999999987611 01 1111122211 11 2344 999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..... .++...+.+.++. +++++||++|.|+.++
T Consensus 121 ~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 121 ERVVG----KEQGQNLARQWGC---AFLETSAKAKINVNEI 154 (164)
T ss_pred ccEEc----HHHHHHHHHHhCC---EEEEeeCCCCCCHHHH
Confidence 32111 1123344555554 8999999999999985
No 251
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=5.7e-14 Score=145.36 Aligned_cols=151 Identities=22% Similarity=0.273 Sum_probs=97.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP- 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 402 (967)
.+||+++|..|+|||||+++|++.. +. ......++.+.....+...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~------------------------~~---------~~~~~ti~~d~~~~~i~~~~ 48 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGR------------------------FA---------EVSDPTVGVDFFSRLIEIEP 48 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC------------------------CC---------CCCCceeceEEEEEEEEECC
Confidence 3789999999999999999998621 10 0011122233322233321
Q ss_pred --CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHc--CCCeEEEEEecCCcc
Q psy3751 403 --KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLL--RIKHIIIAVNKMDLI 477 (967)
Q Consensus 403 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~--~~~~iivviNK~D~~ 477 (967)
...+.++||||++.|.......++.+|++|+|+|.++.. .+ ....+.+... ... ..+++++|.||+|+.
T Consensus 49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~-----Sf-~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 49 GVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE-----SF-EHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred CCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 246889999999998887777889999999999998721 01 1112222222 122 234578899999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+..+. ..++...+.+.++. +++++||++|.|++++.
T Consensus 123 ~~~~v----~~~~~~~~~~~~~~---~~~e~Sak~g~~v~e~f 158 (211)
T cd04111 123 SQRQV----TREEAEKLAKDLGM---KYIETSARTGDNVEEAF 158 (211)
T ss_pred ccccc----CHHHHHHHHHHhCC---EEEEEeCCCCCCHHHHH
Confidence 53221 12233445556654 89999999999999854
No 252
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.53 E-value=5.5e-14 Score=154.02 Aligned_cols=155 Identities=23% Similarity=0.246 Sum_probs=95.6
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
-+-...|+++|.+|||||||+++|+.....+ ....+.|.......+.
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~v---------------------------------a~y~fTT~~p~ig~v~ 200 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKI---------------------------------ADYPFTTLVPNLGVVR 200 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCccc---------------------------------cCCCCCccCCEEEEEE
Confidence 3455679999999999999999998632111 0001233433334455
Q ss_pred cCC-ceEEEeeChhhH-------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH----HHcCCCeEE
Q psy3751 401 TPK-RKFIIADTPGHE-------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA----HLLRIKHII 468 (967)
Q Consensus 401 ~~~-~~~~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~----~~~~~~~ii 468 (967)
+++ .+++++||||.. .+....++.+..+|++++|+|++..... ....+.......+ ..+..++++
T Consensus 201 ~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~---~~~e~l~~l~~EL~~~~~~l~~kp~I 277 (329)
T TIGR02729 201 VDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGR---DPIEDYEIIRNELKKYSPELAEKPRI 277 (329)
T ss_pred eCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCcccccc---CHHHHHHHHHHHHHHhhhhhccCCEE
Confidence 555 789999999953 2344556667889999999999862110 0111111111111 112234589
Q ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 469 IAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 469 vviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+||+|+.+.. ..+++ .+.+.+.++ .+++++||++++|++++
T Consensus 278 IV~NK~DL~~~~--~~~~~---~~~l~~~~~---~~vi~iSAktg~GI~eL 320 (329)
T TIGR02729 278 VVLNKIDLLDEE--ELAEL---LKELKKALG---KPVFPISALTGEGLDEL 320 (329)
T ss_pred EEEeCccCCChH--HHHHH---HHHHHHHcC---CcEEEEEccCCcCHHHH
Confidence 999999997532 12222 333344444 37899999999999984
No 253
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.53 E-value=3.8e-14 Score=144.57 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=91.7
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEe-eceeeeecCC-
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITID-VAYRYFNTPK- 403 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~~- 403 (967)
+|+++|.+|+|||||+++|+.. . |.... . .|+. .....+..++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~--~----------------------f~~~~--~---------~t~~~~~~~~~~~~~~ 45 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLN--H----------------------FVETY--D---------PTIEDSYRKQVVVDGQ 45 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--C----------------------CCccC--C---------CchHhhEEEEEEECCE
Confidence 5899999999999999999861 1 10000 0 0000 0001122233
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc-----CCCeEEEEEecCCcc
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL-----RIKHIIIAVNKMDLI 477 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~-----~~~~iivviNK~D~~ 477 (967)
..+.||||||+++|.......++.+|++|+|+|.++... + ....+.+..+... ...++|+|.||+|+.
T Consensus 46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s-----~-~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRST-----F-ERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH-----H-HHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 357899999999998877778899999999999987210 0 1112222222111 123589999999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
...+... .....+.+.++. +++++||++|.|++++.
T Consensus 120 ~~~~v~~----~~~~~~~~~~~~---~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 120 YEREVST----EEGAALARRLGC---EFIEASAKTNVNVERAF 155 (190)
T ss_pred ccCccCH----HHHHHHHHHhCC---EEEEecCCCCCCHHHHH
Confidence 5322111 123344555554 78999999999999863
No 254
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.53 E-value=3.8e-14 Score=140.40 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=90.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec-CCc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT-PKR 404 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~ 404 (967)
+|+++|.+|+|||||+++|+... +. ...+ ..|.+ ...+.. ...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~------------------------~~-----~~~~---t~~~~----~~~~~~~~~~ 44 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE------------------------LV-----TTIP---TVGFN----VEMLQLEKHL 44 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC------------------------cc-----cccC---ccCcc----eEEEEeCCce
Confidence 48999999999999999998621 00 0000 01111 111222 346
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH-HH--H-cCCCeEEEEEecCCccCcC
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSII-AH--L-LRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~-~~--~-~~~~~iivviNK~D~~~~~ 480 (967)
.+.++||||+..+...+...+..+|++|+|+|+.+.. -.......+.. .+ . .+. ++++|+||+|+....
T Consensus 45 ~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~------~~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~ 117 (160)
T cd04156 45 SLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA------RLDESQKELKHILKNEHIKGV-PVVLLANKQDLPGAL 117 (160)
T ss_pred EEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH------HHHHHHHHHHHHHhchhhcCC-CEEEEEECcccccCc
Confidence 7999999999988887777789999999999998721 01111222211 11 1 244 499999999986421
Q ss_pred HHHHHHHHHHHHHHHHHcCC-ccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHF-QNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~-~~~~ii~iSa~~g~gi~~l 519 (967)
. .+++...+. +..+.. .+.+++++||++|.|++++
T Consensus 118 ~--~~~i~~~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 118 T--AEEITRRFK--LKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred C--HHHHHHHcC--CcccCCCCcEEEEecccccCCChHHH
Confidence 1 122222111 011111 2357899999999999984
No 255
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.53 E-value=1.8e-13 Score=136.21 Aligned_cols=150 Identities=22% Similarity=0.279 Sum_probs=94.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
..+|+++|.+|+|||||+|+|++..-.. ..+. ...+.......+...+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~--------------------------~~~~------~~~~~~~~~~~~~~~~ 50 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI--------------------------VSPK------PQTTRNRIRGIYTDDD 50 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe--------------------------ccCC------CCceeceEEEEEEcCC
Confidence 4679999999999999999998621100 0000 0111111112233445
Q ss_pred ceEEEeeChhhHH--------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 404 RKFIIADTPGHEQ--------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 404 ~~~~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
..+.++||||... +.......+..+|++++|+|+++ ............+...+.+ +++|+||+|
T Consensus 51 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~-------~~~~~~~~~~~~~~~~~~~-~iiv~nK~D 122 (168)
T cd04163 51 AQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASE-------PIGEGDEFILELLKKSKTP-VILVLNKID 122 (168)
T ss_pred eEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCC-------ccCchHHHHHHHHHHhCCC-EEEEEEchh
Confidence 7899999999532 33344556788999999999998 3233334444445445565 889999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+....+ .+.+.+..+....+ ..+++++|++++.|++++
T Consensus 123 l~~~~~----~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~l 160 (168)
T cd04163 123 LVKDKE----DLLPLLEKLKELGP--FAEIFPISALKGENVDEL 160 (168)
T ss_pred ccccHH----HHHHHHHHHHhccC--CCceEEEEeccCCChHHH
Confidence 974222 22222333333332 247899999999999883
No 256
>PRK00919 GMP synthase subunit B; Validated
Probab=99.53 E-value=1.8e-13 Score=146.31 Aligned_cols=177 Identities=18% Similarity=0.123 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLI 98 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~ 98 (967)
++..+++.++.|++.+.. ++++|+||||+||+++++++++++ +.++.++|+|+|.......+.++++++++ +++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~l---G~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~ 78 (307)
T PRK00919 4 PEKFIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAI---GDRLTPVFVDTGLMRKGETERIKETFSDM-LNLR 78 (307)
T ss_pred HHHHHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHh---CCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCcE
Confidence 677778888888888776 899999999999999999999864 44799999999998777788999999888 9988
Q ss_pred EEecchhhhhcccccCCCCcccchhh---cHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCc
Q psy3751 99 VRSVEDSIMKGTVRLRKPNTDSRNAA---QSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p 175 (967)
++.....+....... ..+...|..| ....+.+.+++.|.+.+++|++.||..+... .+.+..+-.+ .|
T Consensus 79 vvd~~e~fl~~L~~v-~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~-~iks~~nv~g-------l~ 149 (307)
T PRK00919 79 IVDAKDRFLDALKGV-TDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEG-GIKSHHNVGG-------LP 149 (307)
T ss_pred EEECCHHHHHhccCC-CChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccC-cccccccccc-------cC
Confidence 887766554332222 1112223323 3444667788889999999999998754311 0000000000 00
Q ss_pred cccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 176 ELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 176 ~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
.......++||.+|+++||.+|.+++|+|+.-++
T Consensus 150 ----------~~~~~~Ii~PL~~l~K~EVr~la~~lGLp~~~~~ 183 (307)
T PRK00919 150 ----------EGMVLKIVEPLRDLYKDEVREVARALGLPEEISE 183 (307)
T ss_pred ----------hhhcCCcccCchhCcHHHHHHHHHHcCCChhhhC
Confidence 0011246899999999999999999999987666
No 257
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.53 E-value=9.1e-14 Score=138.46 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=89.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|.+|+|||||+++++... +. .+....+.++.....+..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~------------------------~~---------~~~~~t~~~~~~~~~~~~~~~ 47 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE------------------------FE---------KKYVATLGVEVHPLDFHTNRG 47 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------------------------CC---------CCCCCceeeEEEEEEEEECCE
Confidence 479999999999999999998510 10 0001111122222222222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH-HHHHHHHHH-cCCCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT-KRHSIIAHL-LRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t-~~~~~~~~~-~~~~~iivviNK~D~~~~~ 480 (967)
...+.+|||||+++|.......+..+|++|+|+|.++ ...-+. ...+..+.. .+-.++|+|+||+|+.+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~ 120 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS-------RVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK 120 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc
Confidence 3567899999998876555556688999999999987 221111 112222222 2234499999999997322
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. ......+.+.. ..+++++||++|.|++++
T Consensus 121 ~------~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 121 V------KAKQITFHRKK---NLQYYEISAKSNYNFEKP 150 (166)
T ss_pred C------CHHHHHHHHHc---CCEEEEEeCCCCCChHHH
Confidence 1 11112233332 347899999999999985
No 258
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.53 E-value=9.7e-14 Score=139.52 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=94.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|..|+|||||+++|... .+. +. .. |+...+..+..+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~------------------------~~~-----~~-----~~--t~~~~~~~~~~~ 55 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLG------------------------ESV-----TT-----IP--TIGFNVETVTYK 55 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC------------------------CCC-----Cc-----CC--ccccceEEEEEC
Confidence 4589999999999999999999641 010 00 01 111112233445
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCccCc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~~~ 479 (967)
+..+.++||||+..|...+...++.+|++|+|+|+++.. -.....+.+..... ....++++|.||+|+.+.
T Consensus 56 ~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 56 NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD------RIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH------HHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 678999999999998887777789999999999998721 11223333322211 122459999999999753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. ..++.+.+. +.......+.++++||++|.|+.++
T Consensus 130 ~~--~~~i~~~~~--~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 130 MK--AAEITEKLG--LHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred CC--HHHHHHHhC--ccccCCCcEEEEEeeCCCCCCHHHH
Confidence 21 112222111 0011112346789999999999984
No 259
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.53 E-value=6.1e-14 Score=142.20 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=95.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+++|.+|+|||||+++|.+.. +. .. ..|.......+..+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~------------------------~~--~~----------~~t~~~~~~~~~~~ 59 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDR------------------------LA--QH----------QPTQHPTSEELAIG 59 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCC------------------------Cc--cc----------CCccccceEEEEEC
Confidence 44889999999999999999998621 00 00 00111122234445
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH-HH---HcCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSII-AH---LLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~-~~---~~~~~~iivviNK~D~~~ 478 (967)
+.++.++||||+..+...+...+..+|++++|+|+++. .......+.+.. +. ..+. ++++|+||+|+..
T Consensus 60 ~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~------~~~~~~~~~l~~l~~~~~~~~~-piliv~NK~Dl~~ 132 (184)
T smart00178 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDK------ERFAESKRELDALLSDEELATV-PFLILGNKIDAPY 132 (184)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcH------HHHHHHHHHHHHHHcChhhcCC-CEEEEEeCccccC
Confidence 67899999999998887777788999999999999872 111222222221 11 1344 4999999999864
Q ss_pred cCHHHHHHHHHHHHHHHHH------cCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAED------IHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~------~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .+++.+.+. +... .+.....++++||++|.|+++.
T Consensus 133 ~~~--~~~i~~~l~-l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~ 176 (184)
T smart00178 133 AAS--EDELRYALG-LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEG 176 (184)
T ss_pred CCC--HHHHHHHcC-CCcccccccccCCceeEEEEeecccCCChHHH
Confidence 311 122332221 1000 1223457999999999999883
No 260
>PLN03110 Rab GTPase; Provisional
Probab=99.53 E-value=8.7e-14 Score=144.69 Aligned_cols=152 Identities=23% Similarity=0.236 Sum_probs=98.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..+||+++|+.|+|||||+++|++.. + ..+....+..+.....+..
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~------------------------~---------~~~~~~t~g~~~~~~~v~~ 56 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNE------------------------F---------CLESKSTIGVEFATRTLQV 56 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC------------------------C---------CCCCCCceeEEEEEEEEEE
Confidence 356899999999999999999998621 1 0111122333333333444
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc---CCCeEEEEEecCCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL---RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~---~~~~iivviNK~D~ 476 (967)
++ ..+.||||||++.|.......++.+|++|+|+|.++.. ........+..+... ++ ++++|.||+|+
T Consensus 57 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~------s~~~~~~~~~~~~~~~~~~~-piiiv~nK~Dl 129 (216)
T PLN03110 57 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ------TFDNVQRWLRELRDHADSNI-VIMMAGNKSDL 129 (216)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChH------HHHHHHHHHHHHHHhCCCCC-eEEEEEEChhc
Confidence 43 47889999999998887777789999999999998711 111122223333322 34 48999999998
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
....+.. .+..+.+....+ .+++++||++|.|++++.
T Consensus 130 ~~~~~~~----~~~~~~l~~~~~---~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 130 NHLRSVA----EEDGQALAEKEG---LSFLETSALEATNVEKAF 166 (216)
T ss_pred ccccCCC----HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHH
Confidence 6432111 112233344444 489999999999999863
No 261
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.53 E-value=3.6e-14 Score=146.59 Aligned_cols=155 Identities=21% Similarity=0.170 Sum_probs=96.2
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
+||+++|.+++|||||+++|+.. .|. + ...|+...+........
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~------------------------~f~-----~-------~~~Tig~~~~~~~~~~~ 44 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMER------------------------RFK-----D-------TVSTVGGAFYLKQWGPY 44 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC------------------------CCC-----C-------CCCccceEEEEEEeeEE
Confidence 47999999999999999999861 110 0 00122112222233456
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcCH-
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYNQ- 481 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~~- 481 (967)
.+.+|||||++.|.......++.+|++|+|+|+++.. .+ ......+..+... .-.++|+|.||+|+.+...
T Consensus 45 ~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~-----Sf-~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~ 118 (220)
T cd04126 45 NISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ-----SL-EELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGAL 118 (220)
T ss_pred EEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCcEEEEEECccccccccc
Confidence 7899999999998877777789999999999999711 01 1111222222221 1134899999999975100
Q ss_pred --------------HHHHHHHHHHHHHHHHcC-----------CccceEEeccccCCCccccccc
Q psy3751 482 --------------IFYKRIVYAYKKFAEDIH-----------FQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 482 --------------~~~~~i~~~~~~~~~~~~-----------~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
....-..++.+.+.++.+ ....+++++||++|.||+++..
T Consensus 119 ~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~ 183 (220)
T cd04126 119 AGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE 183 (220)
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence 000112233444555544 1135899999999999998643
No 262
>PTZ00369 Ras-like protein; Provisional
Probab=99.52 E-value=5.7e-14 Score=143.18 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=93.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+||+++|.+|+|||||++++++..-. +.... ..|.+.. ....+...
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~-----------------------------~~~~~--t~~~~~~-~~~~~~~~ 51 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI-----------------------------DEYDP--TIEDSYR-KQCVIDEE 51 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------cCcCC--chhhEEE-EEEEECCE
Confidence 3589999999999999999999862100 00000 0000110 00112222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-c---CCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-L---RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~---~~~~iivviNK~D~~~ 478 (967)
...+.+|||||+++|.......++.+|++++|+|+++.. .+ ....+.+..... . ++ ++|+|.||+|+.+
T Consensus 52 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~-----s~-~~~~~~~~~i~~~~~~~~~-piiiv~nK~Dl~~ 124 (189)
T PTZ00369 52 TCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS-----SF-EEIASFREQILRVKDKDRV-PMILVGNKCDLDS 124 (189)
T ss_pred EEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCC-CEEEEEECccccc
Confidence 346789999999999888777889999999999998721 00 112222222211 1 33 4899999999865
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.. ..+...+.+.++. +++++||++|.|+.++
T Consensus 125 ~~~i~----~~~~~~~~~~~~~---~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 125 ERQVS----TGEGQELAKSFGI---PFLETSAKQRVNVDEA 158 (189)
T ss_pred ccccC----HHHHHHHHHHhCC---EEEEeeCCCCCCHHHH
Confidence 32211 1122334444444 8999999999999985
No 263
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.52 E-value=1.1e-13 Score=140.01 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=93.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|..|+|||||++++... . +. .. . .|+...+..+...
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~--~----------------------~~-----~~---~----~T~~~~~~~~~~~ 59 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLG--E----------------------VV-----TT---I----PTIGFNVETVEYK 59 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--C----------------------cc-----cc---C----CccccceEEEEEC
Confidence 4578999999999999999999641 0 00 00 0 0111112234446
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHH--HcCCCeEEEEEecCCccCc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAH--LLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~--~~~~~~iivviNK~D~~~~ 479 (967)
+..+.++||||++.|...+...++.+|++|+|+|+++.. .+ ....+.+. +.. .+.-+++++|+||.|+.+.
T Consensus 60 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~-----s~-~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 60 NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE-----RI-GDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH-----HH-HHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 678999999999998887788889999999999998621 11 11222222 211 1223559999999998753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .++...+. +..+....+.++++||++|.|++++
T Consensus 134 ~~~--~~i~~~l~--~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 134 MST--TEVTEKLG--LHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred CCH--HHHHHHhC--CCcccCCcEEEEeeeCCCCCCHHHH
Confidence 211 12211111 0111112346778999999999985
No 264
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.52 E-value=6.5e-14 Score=119.68 Aligned_cols=81 Identities=44% Similarity=0.749 Sum_probs=75.2
Q ss_pred ceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEccccCCCCC
Q psy3751 549 LRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRG 628 (967)
Q Consensus 549 ~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~G 628 (967)
|||||+++|+..+.+ ++++|+|++|.+++||+|.+.|.+...+|++|++++.++++|.|||+|+|+|++..++++|
T Consensus 1 lr~~V~dv~k~~~~~----~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADF----RGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLEDEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCc----EEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEECCccccCCC
Confidence 689999999876544 6799999999999999999999999999999999999999999999999999987789999
Q ss_pred ccccc
Q psy3751 629 NMLVS 633 (967)
Q Consensus 629 ~vl~~ 633 (967)
++|+.
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 99974
No 265
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.52 E-value=2.2e-13 Score=141.93 Aligned_cols=163 Identities=21% Similarity=0.256 Sum_probs=112.8
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccc-eeEeeceeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG-ITIDVAYRYF 399 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g-~Ti~~~~~~~ 399 (967)
..+...|+++|++|+|||||++.|++..... ......| +++ .
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-------------------------------~~~~~~g~i~i------~ 78 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-------------------------------NISDIKGPITV------V 78 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-------------------------------ccccccccEEE------E
Confidence 4567889999999999999999998621110 0001123 222 2
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
...+.+++++||||+- ..++..+..+|++++|+|+.. ++..++.+.+..+...|.+.+|+|+||+|+.+.
T Consensus 79 ~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~-------~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 79 TGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASF-------GFEMETFEFLNILQVHGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred ecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCc-------CCCHHHHHHHHHHHHcCCCeEEEEEeccccCCc
Confidence 2356789999999964 566777899999999999998 777788888888888888867779999999853
Q ss_pred CHHHHHHHHHHHHH-HHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhccc
Q psy3751 480 NQIFYKRIVYAYKK-FAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLN 539 (967)
Q Consensus 480 ~~~~~~~i~~~~~~-~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~ 539 (967)
...++.+.+.++. +.+.+ +...+++++||++.-.+ +|-.+..++..++.+.
T Consensus 149 -~~~~~~~~~~l~~~~~~~~-~~~~ki~~iSa~~~~~~-------~~~e~~~~~r~i~~~~ 200 (225)
T cd01882 149 -NKTLRKTKKRLKHRFWTEV-YQGAKLFYLSGIVHGRY-------PKTEIHNLARFISVMK 200 (225)
T ss_pred -HHHHHHHHHHHHHHHHHhh-CCCCcEEEEeeccCCCC-------CHHHHHHHHHHHHhCC
Confidence 3345566666666 33332 23469999999987443 2233334555665543
No 266
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.52 E-value=1.8e-13 Score=136.20 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=92.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeecee--eee-c
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYR--YFN-T 401 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~-~ 401 (967)
+||+++|.+++|||||+++|....... ..+....+..+.... .+. .
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~ 49 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVF-------------------------------PKNYLMTTGCDFVVKEVPVDTD 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-------------------------------CccCCCceEEEEEEEEEEeCCC
Confidence 479999999999999999998521111 111111122222111 122 2
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH--cCCCeEEEEEecCCccCc
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL--LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~--~~~~~iivviNK~D~~~~ 479 (967)
....+.+|||||++.|.......+..+|++++|+|.++.. .+ ......+..... .++ ++|+|+||+|+.+.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~ 122 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKA-----SF-ENCSRWVNKVRTASKHM-PGVLVGNKMDLADK 122 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHH-----HH-HHHHHHHHHHHHhCCCC-CEEEEEECcccccc
Confidence 2367889999999988877777789999999999998711 01 111222222222 234 48999999999753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+... ...+.+....+. +++++||++|.|+.++
T Consensus 123 ~~~~~----~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 123 AEVTD----AQAQAFAQANQL---KFFKTSALRGVGYEEP 155 (164)
T ss_pred cCCCH----HHHHHHHHHcCC---eEEEEeCCCCCChHHH
Confidence 22111 111223333443 7899999999999984
No 267
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.52 E-value=1.1e-13 Score=141.00 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=93.2
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|..|+|||||+++|+... +. .+....+..+.. ..+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~------------------------~~---------~~~~~t~~~~~~-~~i~~~~~ 46 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK------------------------FP---------EEYVPTVFENYV-TNIQGPNG 46 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc------------------------CC---------CCCCCeeeeeeE-EEEEecCC
Confidence 489999999999999999998621 10 000011111111 112222
Q ss_pred -CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH-HHHHHHH-cCCCeEEEEEecCCccCc
Q psy3751 403 -KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKR-HSIIAHL-LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~-~~~~~~~-~~~~~iivviNK~D~~~~ 479 (967)
...+.++||||+++|.......+..+|++|+|+|+++.. .+ ..... .+..... ..-.++|+|.||+|+...
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 47 KIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPT-----SL-DNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred cEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence 246789999999998877777789999999999998721 11 11111 1111111 122349999999998753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
..........+.+++.+..+. .+++++||++|.|++++.
T Consensus 121 ~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 121 KNLDRKVTPAQAESVAKKQGA--FAYLECSAKTMENVEEVF 159 (187)
T ss_pred ccccCCcCHHHHHHHHHHcCC--cEEEEccCCCCCCHHHHH
Confidence 210000112234445555554 278999999999999853
No 268
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.52 E-value=9e-14 Score=137.87 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=92.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|.+|+|||||+++|+...-.. .....++.+.....+...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 47 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE---------------------------------KHESTTQASFFQKTVNIGGK 47 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC---------------------------------CcCCccceeEEEEEEEECCE
Confidence 479999999999999999998621100 000111112222222222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cC-CCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LR-IKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~-~~~iivviNK~D~~~~~ 480 (967)
...+.++||||++.+.......+..+|++++|+|.++.. ...+....+..... .. -.++++|+||+|+....
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDAD------SFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 246889999999888777666778999999999998721 11112222222222 21 23599999999987532
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+... +.+..+.+..+. +++++|+++|.|++++
T Consensus 122 ~~~~----~~~~~~~~~~~~---~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 122 VVSK----SEAEEYAKSVGA---KHFETSAKTGKGIEEL 153 (162)
T ss_pred CCCH----HHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 2111 223334445554 7899999999999984
No 269
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.52 E-value=1.1e-13 Score=138.96 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=93.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.+||+++|..|+|||||+.++... .|. .+....+..+.. ..+..++
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~------------------------~f~---------~~~~pt~~~~~~-~~~~~~~ 46 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTN------------------------KFP---------SEYVPTVFDNYA-VTVMIGG 46 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC------------------------CCC---------CCCCCceeeeeE-EEEEECC
Confidence 368999999999999999999861 110 000011111111 1223333
Q ss_pred --ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH-HHHHHHH-cCCCeEEEEEecCCccCc
Q psy3751 404 --RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKR-HSIIAHL-LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 404 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~-~~~~~~~-~~~~~iivviNK~D~~~~ 479 (967)
..+.+|||||+++|.......++.+|++|+|+|.++.. .+ ....+ ++..... ..-.|+|+|.||+|+.+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~-----s~-~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 47 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS-----SF-ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred EEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence 56789999999998776666778999999999998721 01 11111 2222222 223459999999998653
Q ss_pred CHHHHHHH---------HHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRI---------VYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+ ..+.+ .++.+.+.++.+ ...++++||++|.|+.++
T Consensus 121 ~~-~~~~l~~~~~~~v~~~~~~~~a~~~~--~~~~~e~SA~tg~~v~~~ 166 (175)
T cd01874 121 PS-TIEKLAKNKQKPITPETGEKLARDLK--AVKYVECSALTQKGLKNV 166 (175)
T ss_pred hh-hHHHhhhccCCCcCHHHHHHHHHHhC--CcEEEEecCCCCCCHHHH
Confidence 21 11111 122333444443 248999999999999985
No 270
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.52 E-value=8.5e-14 Score=158.41 Aligned_cols=143 Identities=25% Similarity=0.265 Sum_probs=97.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
++.++|+++|++|+|||||+|+|++....+ .....|.|.+.....+..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai--------------------------------vs~~pgtTrd~~~~~i~~ 248 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI--------------------------------VSDIKGTTRDVVEGDFEL 248 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc--------------------------------cCCCCCcEEEEEEEEEEE
Confidence 355789999999999999999999732211 011257788877777888
Q ss_pred CCceEEEeeChhhHHHH--------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 402 PKRKFIIADTPGHEQYT--------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
++..+.++||||..++. ......+..+|++++|+|+++ ....+.. .+..+...+.| +|+|+||
T Consensus 249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~-------~~s~~~~-~l~~~~~~~~p-iIlV~NK 319 (442)
T TIGR00450 249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ-------PLTKDDF-LIIDLNKSKKP-FILVLNK 319 (442)
T ss_pred CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC-------CCChhHH-HHHHHhhCCCC-EEEEEEC
Confidence 88899999999974322 234566789999999999987 3222222 23333334554 8999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+.+.+ ...+.+.++. +++++||++ .|+.++
T Consensus 320 ~Dl~~~~----------~~~~~~~~~~---~~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 320 IDLKINS----------LEFFVSSKVL---NSSNLSAKQ-LKIKAL 351 (442)
T ss_pred ccCCCcc----------hhhhhhhcCC---ceEEEEEec-CCHHHH
Confidence 9997531 1122333343 689999998 577764
No 271
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.52 E-value=9.7e-14 Score=139.04 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeece-eeeecCC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAY-RYFNTPK 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~~~~ 403 (967)
+||+++|..|+|||||++++... . +. .+. ..|+...+ ..+..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~--~----------------------f~---------~~~--~~t~~~~~~~~~~~~~ 47 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISH--S----------------------FP---------DYH--DPTIEDAYKQQARIDN 47 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC--C----------------------CC---------CCc--CCcccceEEEEEEECC
Confidence 68999999999999999999861 1 10 000 00111000 1122233
Q ss_pred --ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecCCcc
Q psy3751 404 --RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKMDLI 477 (967)
Q Consensus 404 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~D~~ 477 (967)
..+.++||||.++|.......+..+|++|+|+|.++.. .+ ....+....... .++ |+|+|.||+|+.
T Consensus 48 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~-----Sf-~~~~~~~~~i~~~~~~~~~-piilvgNK~Dl~ 120 (172)
T cd04141 48 EPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRH-----SF-QEASEFKKLITRVRLTEDI-PLVLVGNKVDLE 120 (172)
T ss_pred EEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchh-----HH-HHHHHHHHHHHHhcCCCCC-CEEEEEEChhhh
Confidence 46789999999998877777889999999999998821 11 111222222222 234 499999999986
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+.. .++...+.+..++ +++++||++|.|++++
T Consensus 121 ~~~~v~----~~~~~~~a~~~~~---~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 121 SQRQVT----TEEGRNLAREFNC---PFFETSAALRHYIDDA 155 (172)
T ss_pred hcCccC----HHHHHHHHHHhCC---EEEEEecCCCCCHHHH
Confidence 532211 1223345555554 8999999999999985
No 272
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.51 E-value=2.4e-13 Score=157.69 Aligned_cols=183 Identities=17% Similarity=0.137 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC-hhhHHHHHHHHHHhCCcE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF-PEVISFRDNCISKLGETL 97 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~-pet~~~~~~~~~~~gi~i 97 (967)
++..+++.++.|++.+.. ++++|++|||+||+|+++++.+++ +.++.++|+|+|... ++..+..+.+++++|+++
T Consensus 198 ~~~~~~~~~~~l~~~v~~-~~vlva~SGGvDS~vll~ll~~~l---g~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~ 273 (511)
T PRK00074 198 MENFIEEAIEEIREQVGD-KKVILGLSGGVDSSVAAVLLHKAI---GDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNL 273 (511)
T ss_pred HHHHHHHHHHHHHHhcCC-CcEEEEeCCCccHHHHHHHHHHHh---CCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 556777777888877765 889999999999999999999885 347999999999854 456666667889999999
Q ss_pred EEEecchhhhhcccccCCC--CcccchhhcHHHHHHHHHHc-CCcEEEEeccchhhHhhhccccccccccCCCCCCCCCC
Q psy3751 98 IVRSVEDSIMKGTVRLRKP--NTDSRNAAQSITLLETIKEF-KFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQR 174 (967)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~ 174 (967)
+++..+..+.........+ .|..|+...+..+.+.+++. |.+.+++||+.||..+...++ ..+. . +++.
T Consensus 274 ~vvd~~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~--~~~~---i---k~~~ 345 (511)
T PRK00074 274 IHVDASDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTK--KAAT---I---KSHH 345 (511)
T ss_pred EEEccHHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhhhhcCCC--Cccc---c---cccc
Confidence 9998876554432222111 23445555567788889898 999999999999987654332 1000 0 0000
Q ss_pred ccccccccccCCC-CCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 175 PELWNLYNTRVHP-GENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 175 p~~~~~~~~~~~~-~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
+ + .+... .....++||.+++++||.+|.+++|||+...+
T Consensus 346 ~-l-----~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp~~~~~ 385 (511)
T PRK00074 346 N-V-----GGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEIVY 385 (511)
T ss_pred C-c-----cCcChhHhcccccchhhcCHHHHHHHHHHcCCCHHHhC
Confidence 0 0 00110 11347899999999999999999999987777
No 273
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.51 E-value=9.5e-14 Score=138.45 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=92.7
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
+|+++|..|+|||||+++|.+. .. . +...|+......+..++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~---------------------------~------~~~~t~g~~~~~~~~~~~~ 44 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IP---------------------------K------KVAPTVGFTPTKLRLDKYE 44 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CC---------------------------c------cccCcccceEEEEEECCEE
Confidence 4899999999999999999862 00 0 0011111222345556788
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCccCcCHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~~~~~~ 482 (967)
+.++|+||+..|...+...+..+|++|+|+|+++.. ........+..... ..-.++++|+||+|+.+....
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~------s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~ 118 (167)
T cd04161 45 VCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD------RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118 (167)
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh------HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH
Confidence 999999999998888888889999999999998721 11222222222211 122459999999999764311
Q ss_pred HHHHHHHH--HHHHHHHcCCccceEEeccccCC------Ccccc
Q psy3751 483 FYKRIVYA--YKKFAEDIHFQNINTIPISALNG------DNIIS 518 (967)
Q Consensus 483 ~~~~i~~~--~~~~~~~~~~~~~~ii~iSa~~g------~gi~~ 518 (967)
.++.+. +..+.++.+ ...+++++||++| .|+.+
T Consensus 119 --~~i~~~~~l~~~~~~~~-~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 119 --ADVIEYLSLEKLVNENK-SLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred --HHHHHhcCcccccCCCC-ceEEEEEeEceeCCCCccccCHHH
Confidence 122222 122221112 1357899999999 66665
No 274
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.51 E-value=1e-13 Score=142.64 Aligned_cols=146 Identities=16% Similarity=0.079 Sum_probs=110.2
Q ss_pred cEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcccccCCCCcc
Q psy3751 40 PVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTD 119 (967)
Q Consensus 40 i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~ 119 (967)
++|++|||+||+++++++.+... .++.++|+|+|...++..++++++|+++|++++++.................+.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~ 77 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---DRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCY 77 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---CcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccccHHHhcCCCCccc
Confidence 57999999999999999988743 268999999998777889999999999999999987763222111111233455
Q ss_pred cchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeCC--
Q psy3751 120 SRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPIS-- 197 (967)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~-- 197 (967)
.|...+...+.+.++++|.+++++|++.||..+-. +-+. ... ....++||+
T Consensus 78 ~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~--~~~~------------------~~~-------~~~iirPL~~~ 130 (202)
T cd01990 78 LCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR--PGLK------------------ALR-------ELGVRSPLAEA 130 (202)
T ss_pred hhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC--hHHH------------------HHH-------HcCCcCchhhc
Confidence 66667777788889999999999999999875310 0000 000 023589999
Q ss_pred CCcHHHHHHHHHHcCCCC
Q psy3751 198 NWTELDIWQYIEREKIIL 215 (967)
Q Consensus 198 ~wt~~dV~~yi~~~~lp~ 215 (967)
.|+++||..|++++|+|+
T Consensus 131 ~~~K~ei~~~a~~~gl~~ 148 (202)
T cd01990 131 GLGKAEIRELARELGLPT 148 (202)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 599999999999999988
No 275
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.51 E-value=1.6e-13 Score=140.90 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=88.9
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC--
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK-- 403 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-- 403 (967)
||+++|+.|+|||||+++|++.. +. .+ ....+.+.....+...+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~------------------------~~---------~~-~~~t~~~~~~~~~~~~~~~ 46 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT------------------------FE---------PK-YRRTVEEMHRKEYEVGGVS 46 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC------------------------CC---------cc-CCCchhhheeEEEEECCEE
Confidence 58999999999999999998621 00 00 00000111112233333
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCc-CH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINY-NQ 481 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~-~~ 481 (967)
..+.++||||+.+|.......+..+|++|+|+|+++... +.........+..... .++| +|+|+||+|+... ..
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~ 122 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPES---FEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQ 122 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCc-EEEEEEcccccccccc
Confidence 568899999999887766667889999999999987110 0000111111111111 2444 9999999998753 21
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
...+... +......+ .+++++||++|.|++++.
T Consensus 123 v~~~~~~---~~~~~~~~---~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 123 VPAKDAL---STVELDWN---CGFVETSAKDNENVLEVF 155 (198)
T ss_pred ccHHHHH---HHHHhhcC---CcEEEecCCCCCCHHHHH
Confidence 1111111 11111222 378999999999999853
No 276
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.51 E-value=2.8e-13 Score=134.26 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=94.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
++|+++|..++|||||+++++.. .+ ..+....++.+.....+..++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~------------------------~~---------~~~~~~t~~~~~~~~~~~~~~~ 47 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDN------------------------EF---------HSSHISTIGVDFKMKTIEVDGI 47 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcC------------------------CC---------CCCCCCceeeEEEEEEEEECCE
Confidence 47999999999999999999851 11 011112222333323344444
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcC
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~ 480 (967)
..+.+|||||.++|..........+|++++|+|.++.. .+ ......+...... .-.++++|.||+|+.+..
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----sf-~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSER-----SY-QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHH-----HH-HHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 46789999999998877777789999999999998721 01 1112222222222 124589999999986532
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.. .++...+.+..+ .+++++||++|.|++++
T Consensus 122 ~v~----~~~~~~~~~~~~---~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 122 QVG----DEQGNKLAKEYG---MDFFETSACTNSNIKES 153 (161)
T ss_pred CCC----HHHHHHHHHHcC---CEEEEEeCCCCCCHHHH
Confidence 211 122333444455 37899999999999984
No 277
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.51 E-value=1.5e-13 Score=135.63 Aligned_cols=147 Identities=17% Similarity=0.191 Sum_probs=93.0
Q ss_pred EEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceE
Q psy3751 327 FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKF 406 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 406 (967)
|+++|++|+|||||+++|.+.. +. .+... |+......+..++..+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~------------------------~~---------~~~~~--t~~~~~~~~~~~~~~~ 46 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ------------------------FS---------EDTIP--TVGFNMRKVTKGNVTL 46 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC------------------------CC---------cCccC--CCCcceEEEEECCEEE
Confidence 7999999999999999998621 10 00001 1112222344456789
Q ss_pred EEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH----HcCCCeEEEEEecCCccCcCHH
Q psy3751 407 IIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH----LLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 407 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~----~~~~~~iivviNK~D~~~~~~~ 482 (967)
.++|+||+..|...+...+..+|++++|+|+++. ....+..+.+.... ..+.| +++|+||+|+.+....
T Consensus 47 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~ 119 (159)
T cd04159 47 KVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR------TALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGALSV 119 (159)
T ss_pred EEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH------HHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCcCH
Confidence 9999999999988888888999999999999861 11122222222221 12444 8999999998764321
Q ss_pred HHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.++...+. +.......++++++|+++|.|++++
T Consensus 120 --~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (159)
T cd04159 120 --DELIEQMN--LKSITDREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred --HHHHHHhC--cccccCCceEEEEEEeccCCChHHH
Confidence 11111110 1111123468899999999999983
No 278
>KOG0078|consensus
Probab=99.51 E-value=1.4e-13 Score=134.06 Aligned_cols=155 Identities=21% Similarity=0.210 Sum_probs=112.2
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.-...++|+++|..++|||.|+-++.. ++|.. .....+.||+....+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d------------------------~~f~~---------~~~sTiGIDFk~kti 54 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSD------------------------DSFNT---------SFISTIGIDFKIKTI 54 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhh------------------------ccCcC---------CccceEEEEEEEEEE
Confidence 345779999999999999999999875 22221 112345677777777
Q ss_pred ecCCc--eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 400 NTPKR--KFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 400 ~~~~~--~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
+.++. .+.+|||.|++.|...+-+.++.|++++||+|.+. -.|+....|.....+| ..-+++ +++|.||+|+
T Consensus 55 ~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~----a~~~v~-~~LvGNK~D~ 129 (207)
T KOG0078|consen 55 ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEH----ASDDVV-KILVGNKCDL 129 (207)
T ss_pred EeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhh----CCCCCc-EEEeeccccc
Confidence 77765 45799999999999999999999999999999998 2232111122222222 223555 8889999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
....+. -.+.-++++.++|+ +|+.+||++|.||++.
T Consensus 130 ~~~R~V----~~e~ge~lA~e~G~---~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 130 EEKRQV----SKERGEALAREYGI---KFFETSAKTNFNIEEA 165 (207)
T ss_pred cccccc----cHHHHHHHHHHhCC---eEEEccccCCCCHHHH
Confidence 864332 23445667788887 8999999999999984
No 279
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.51 E-value=9e-14 Score=119.56 Aligned_cols=80 Identities=35% Similarity=0.457 Sum_probs=74.1
Q ss_pred CceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEc--cccCC
Q psy3751 548 PLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIK--EYLDI 625 (967)
Q Consensus 548 ~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~--~~~~i 625 (967)
||+|+|+++|+.. | ++++|+|++|++++||+|.+.|.+..++|++|++++.++++|.|||+|+++|+ +..++
T Consensus 1 plr~~I~~v~~~~--g----~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v 74 (82)
T cd04089 1 PLRLPIIDKYKDM--G----TVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDI 74 (82)
T ss_pred CeEEEEEeEEEcC--C----EEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHC
Confidence 7999999999754 3 79999999999999999999999999999999999999999999999999998 45689
Q ss_pred CCCccccc
Q psy3751 626 SRGNMLVS 633 (967)
Q Consensus 626 ~~G~vl~~ 633 (967)
++||+|++
T Consensus 75 ~~G~vl~~ 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEEeC
Confidence 99999974
No 280
>PLN03108 Rab family protein; Provisional
Probab=99.51 E-value=2.4e-13 Score=140.84 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=96.7
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+||+++|.+|+|||||+++|+... +. ......++.+.....+..+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~------------------------~~---------~~~~~ti~~~~~~~~i~~~ 51 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKR------------------------FQ---------PVHDLTIGVEFGARMITID 51 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC------------------------CC---------CCCCCCccceEEEEEEEEC
Confidence 45899999999999999999998621 10 0000111122222223333
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~ 478 (967)
+ ..+.+|||||++.|.......++.+|++|+|+|++... ......+.+...... ...++++|.||+|+.+
T Consensus 52 ~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~------s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 52 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE------TFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHH------HHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 3 45789999999999887777888999999999998721 111111222222211 2245999999999875
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.... ..++.+++.+..++ +++++||++|.|++++
T Consensus 126 ~~~~----~~~~~~~~~~~~~~---~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 126 RRAV----STEEGEQFAKEHGL---IFMEASAKTAQNVEEA 159 (210)
T ss_pred ccCC----CHHHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 3221 12233445556664 8999999999999985
No 281
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.51 E-value=1e-13 Score=137.86 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=92.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeecee--eeecC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYR--YFNTP 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~~~ 402 (967)
+||+++|.+|+|||||+++|+...-. . +. .+.+.+.... .+...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~--------------------------~~------~~~~~~~~~~~~~~~~~ 46 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--E--------------------------DY------EPTKADSYRKKVVLDGE 46 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--c--------------------------cc------CCcchhhEEEEEEECCE
Confidence 47999999999999999999862110 0 00 0000000001 12223
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH-HcCCCeEEEEEecCCccCcCH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH-LLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~-~~~~~~iivviNK~D~~~~~~ 481 (967)
...+.++||||+.+|.......++.+|.+++|+|...+.. +.........+.... ..++| +++|+||+|+.+..+
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~ 122 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMES---FTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQ 122 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccc
Confidence 3568899999999998888888899999999999876210 000111112222111 13445 999999999975211
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. .......+.+.++. +++++||++|.|+.++
T Consensus 123 ~----~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 123 V----SSEEAANLARQWGV---PYVETSAKTRQNVEKA 153 (164)
T ss_pred c----CHHHHHHHHHHhCC---eEEEeeCCCCCCHHHH
Confidence 1 11122334445554 8899999999999985
No 282
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.50 E-value=8.6e-14 Score=158.23 Aligned_cols=140 Identities=22% Similarity=0.343 Sum_probs=105.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
.+|+++|+||+|||||+|+|++..-.+ +++ .|+|++-....+...++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~V-------------------gNw--------------pGvTVEkkeg~~~~~~~ 50 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKV-------------------GNW--------------PGVTVEKKEGKLKYKGH 50 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCcee-------------------cCC--------------CCeeEEEEEEEEEecCc
Confidence 459999999999999999999843322 112 58999999999999999
Q ss_pred eEEEeeChhh---------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH---HHHHHcCCCeEEEEEe
Q psy3751 405 KFIIADTPGH---------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS---IIAHLLRIKHIIIAVN 472 (967)
Q Consensus 405 ~~~liDtpG~---------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~---~~~~~~~~~~iivviN 472 (967)
.+.++|.||. |.-.+..+. -..+|++|.|+||++ .++++ ..+..+|+| +|+++|
T Consensus 51 ~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~~D~ivnVvDAtn------------LeRnLyltlQLlE~g~p-~ilaLN 116 (653)
T COG0370 51 EIEIVDLPGTYSLTAYSEDEKVARDFLL-EGKPDLIVNVVDATN------------LERNLYLTLQLLELGIP-MILALN 116 (653)
T ss_pred eEEEEeCCCcCCCCCCCchHHHHHHHHh-cCCCCEEEEEcccch------------HHHHHHHHHHHHHcCCC-eEEEec
Confidence 9999999992 222222221 256899999999987 33333 345568888 999999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
++|..+.. .+.-+.+++.+.+|. |++|+||++|.|++++
T Consensus 117 m~D~A~~~-----Gi~ID~~~L~~~LGv---PVv~tvA~~g~G~~~l 155 (653)
T COG0370 117 MIDEAKKR-----GIRIDIEKLSKLLGV---PVVPTVAKRGEGLEEL 155 (653)
T ss_pred cHhhHHhc-----CCcccHHHHHHHhCC---CEEEEEeecCCCHHHH
Confidence 99987432 233445566777786 9999999999999985
No 283
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.50 E-value=1.4e-13 Score=136.70 Aligned_cols=147 Identities=17% Similarity=0.141 Sum_probs=91.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
++|+++|.+|+|||||+++++.. .. . +... .. ..+.....+..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~--~~----------------------~-----~~~~----~t-~~~~~~~~~~~~~~ 47 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSG--TF----------------------I-----EKYD----PT-IEDFYRKEIEVDSS 47 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC--CC----------------------C-----CCCC----Cc-hhheEEEEEEECCE
Confidence 58999999999999999999861 11 0 0000 00 0011111222233
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecCCccC
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~D~~~ 478 (967)
..+.|+||||++.|.......++.+|++++|+|.++.. .+ .+..+.+..... .++| +++|+||+|+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~ 120 (163)
T cd04176 48 PSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ-----TF-QDIKPMRDQIVRVKGYEKVP-IILVGNKVDLES 120 (163)
T ss_pred EEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCCC-EEEEEECccchh
Confidence 35779999999998777777788999999999998721 01 112222222222 2344 899999999864
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..... ..+...+.+.++. +++++||++|.|+.++
T Consensus 121 ~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 121 EREVS----SAEGRALAEEWGC---PFMETSAKSKTMVNEL 154 (163)
T ss_pred cCccC----HHHHHHHHHHhCC---EEEEecCCCCCCHHHH
Confidence 32211 1122334444443 8899999999999985
No 284
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.50 E-value=1.9e-13 Score=135.97 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=115.1
Q ss_pred HHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhh
Q psy3751 27 IHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSI 106 (967)
Q Consensus 27 ~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~ 106 (967)
.+.++.+++..++++||||||+||++|+.++.++++ .++.++++|+.+-++...+-+..+++++|+.+.++......
T Consensus 7 l~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~lG---~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~ 83 (269)
T COG1606 7 LERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEALG---DNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD 83 (269)
T ss_pred HHHHHHHHhhcCeEEEEecCCccHHHHHHHHHHHhc---cceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc
Confidence 455667778778999999999999999999999875 48999999999998889999999999999999998765432
Q ss_pred hhcccccCCCCcccchhhc---HHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccc
Q psy3751 107 MKGTVRLRKPNTDSRNAAQ---SITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNT 183 (967)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 183 (967)
.. +..++...|..|| ...+.+.+.+.|+++++.|+|.+|... .+|.+.-..
T Consensus 84 -~~---~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~--------------------~RPG~rA~k-- 137 (269)
T COG1606 84 -PE---FKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFD--------------------YRPGLRALK-- 137 (269)
T ss_pred -hh---hccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcC--------------------CCcchhhHH--
Confidence 11 1112222333333 344677777789999999999998843 111111100
Q ss_pred cCCCCCceEEeeCC--CCcHHHHHHHHHHcCCCCC
Q psy3751 184 RVHPGENIRVFPIS--NWTELDIWQYIEREKIILP 216 (967)
Q Consensus 184 ~~~~~~~~~i~Pl~--~wt~~dV~~yi~~~~lp~~ 216 (967)
..-...|++ ..+++||.+|.+..|+++.
T Consensus 138 -----E~gi~sPl~e~gitk~eIre~a~~lgl~~~ 167 (269)
T COG1606 138 -----ELGIRSPLAEFGITKKEIREIAKSLGLPTW 167 (269)
T ss_pred -----hcCCCChHHHhCCcHHHHHHHHHHcCCCcc
Confidence 011246886 5699999999999999987
No 285
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.50 E-value=1.1e-13 Score=139.28 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=92.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
+||+++|++|+|||||++++++.. +. .+....+ .+.....+..++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~------------------------~~---------~~~~~t~-~~~~~~~~~~~~~ 46 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA------------------------FP---------EEYVPTV-FDHYAVSVTVGGK 46 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------------------------CC---------CCCCCce-eeeeEEEEEECCE
Confidence 479999999999999999998621 10 0000000 011111222333
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH--cCCCeEEEEEecCCccCcC
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL--LRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~--~~~~~iivviNK~D~~~~~ 480 (967)
..+.+|||||+.+|.......+..+|++++|+|..+.. .+.......+..+.. .+. ++++|+||+|+.+..
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~-----s~~~~~~~~~~~l~~~~~~~-piivv~nK~Dl~~~~ 120 (174)
T cd04135 47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA-----SFQNVKEEWVPELKEYAPNV-PYLLVGTQIDLRDDP 120 (174)
T ss_pred EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhhCCCC-CEEEEeEchhhhcCh
Confidence 45779999999988776666778999999999998721 111110111122222 234 489999999987543
Q ss_pred HHHH--------HHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFY--------KRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~--------~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.... .-..++.+.+.+.++. .+++++||++|.|++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~~ 165 (174)
T cd04135 121 KTLARLNDMKEKPVTVEQGQKLAKEIGA--HCYVECSALTQKGLKTV 165 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCC--CEEEEecCCcCCCHHHH
Confidence 2110 0012334455556654 36899999999999985
No 286
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.50 E-value=9e-14 Score=138.87 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=93.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.+.+||+++|.+|+|||||++++++. .|. ..+....+..+.....+..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~------------------------~f~--------~~~~~~T~~~~~~~~~~~~ 49 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR------------------------SFS--------LNAYSPTIKPRYAVNTVEV 49 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC------------------------CCC--------cccCCCccCcceEEEEEEE
Confidence 36789999999999999999999861 110 0000010111111112233
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
++ ..+.++|++|.+.+.......+..+|++++|+|+++.. -.....+.+.......-.++++|+||+|+.+.
T Consensus 50 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~------s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 50 YGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPK------SFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred CCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHH------HHHHHHHHHHHhccCCCCeEEEEEEccccccc
Confidence 33 46789999999888666666678999999999998710 00111122222211122459999999998643
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+. ...+...+.+.++.. .++++||++|.|++++
T Consensus 124 ~~~----~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 124 QQR----YEVQPDEFCRKLGLP--PPLHFSSKLGDSSNEL 157 (169)
T ss_pred ccc----cccCHHHHHHHcCCC--CCEEEEeccCccHHHH
Confidence 221 111233445556653 3589999999999985
No 287
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.50 E-value=8.2e-14 Score=138.41 Aligned_cols=147 Identities=13% Similarity=0.072 Sum_probs=92.8
Q ss_pred EEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceE
Q psy3751 327 FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKF 406 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 406 (967)
|+++|..|+|||||+++|.+..-. .+ ...|+......+...+.++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~---------------------------------~~--~~pt~g~~~~~i~~~~~~l 46 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL---------------------------------ES--VVPTTGFNSVAIPTQDAIM 46 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc---------------------------------cc--ccccCCcceEEEeeCCeEE
Confidence 789999999999999999862100 00 0001111122344566789
Q ss_pred EEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcCCCeEEEEEecCCccCcCHHHHH
Q psy3751 407 IIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLRIKHIIIAVNKMDLINYNQIFYK 485 (967)
Q Consensus 407 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~~~~iivviNK~D~~~~~~~~~~ 485 (967)
.+|||||+.+|...+...++.+|++|+|+|+++.. -....++.+... ....-.++++|+||+|+..... ..
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~------s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~--~~ 118 (164)
T cd04162 47 ELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE------RLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS--VQ 118 (164)
T ss_pred EEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC--HH
Confidence 99999999999887778889999999999998721 111222222222 1112345999999999875432 12
Q ss_pred HHHHH--HHHHHHHcCCccceEEeccccC------CCccccc
Q psy3751 486 RIVYA--YKKFAEDIHFQNINTIPISALN------GDNIISA 519 (967)
Q Consensus 486 ~i~~~--~~~~~~~~~~~~~~ii~iSa~~------g~gi~~l 519 (967)
++.+. +..+.++. .++++++||++ ++|+.++
T Consensus 119 ~i~~~~~~~~~~~~~---~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 119 EIHKELELEPIARGR---RWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred HHHHHhCChhhcCCC---ceEEEEeeecCCCChhHHHHHHHH
Confidence 22221 23333333 34789999988 8888873
No 288
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.50 E-value=1.1e-13 Score=139.56 Aligned_cols=150 Identities=22% Similarity=0.267 Sum_probs=89.6
Q ss_pred EEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-CceEE
Q psy3751 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-KRKFI 407 (967)
Q Consensus 329 ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~~~ 407 (967)
++|.+|+|||||+++|++..- ......+.|++.....+..+ +..+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~---------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~~ 47 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP---------------------------------KVANYPFTTLEPNLGVVEVPDGARIQ 47 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc---------------------------------cccCCCceeecCcceEEEcCCCCeEE
Confidence 589999999999999987211 00111344555555556666 78899
Q ss_pred EeeChhhHH-------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH----------HcCCCeEEEE
Q psy3751 408 IADTPGHEQ-------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH----------LLRIKHIIIA 470 (967)
Q Consensus 408 liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~----------~~~~~~iivv 470 (967)
++||||+.+ +...+...+..+|++++|+|+.+...........+...+..... ..+ .++++|
T Consensus 48 i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv 126 (176)
T cd01881 48 VADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA-KPVIYV 126 (176)
T ss_pred EEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh-CCeEEE
Confidence 999999632 23344566788999999999987210000001111111111111 124 448999
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+||+|+...... .... ..... .....+++++||++|.|+.++
T Consensus 127 ~NK~Dl~~~~~~--~~~~--~~~~~---~~~~~~~~~~Sa~~~~gl~~l 168 (176)
T cd01881 127 LNKIDLDDAEEL--EEEL--VRELA---LEEGAEVVPISAKTEEGLDEL 168 (176)
T ss_pred EEchhcCchhHH--HHHH--HHHHh---cCCCCCEEEEehhhhcCHHHH
Confidence 999999754321 1111 11111 112347899999999999884
No 289
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=1.9e-13 Score=153.24 Aligned_cols=152 Identities=23% Similarity=0.245 Sum_probs=95.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
-...|+++|.+|||||||+++|+...-.+ ....+.|.+.....+..+
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kI---------------------------------a~ypfTTl~PnlG~v~~~ 203 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKI---------------------------------ANYHFTTLVPNLGVVETD 203 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCcc---------------------------------ccCCcceeceEEEEEEEe
Confidence 34469999999999999999998732111 001244555555556655
Q ss_pred -CceEEEeeChhhH-------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEE
Q psy3751 403 -KRKFIIADTPGHE-------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIA 470 (967)
Q Consensus 403 -~~~~~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivv 470 (967)
+.+++++|+||.. .+....++.+..+|++|+|||++..+. .....+.......+.. +.-+++|||
T Consensus 204 ~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~---~dp~e~~~~i~~EL~~y~~~L~~kP~IVV 280 (424)
T PRK12297 204 DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEG---RDPIEDYEKINKELKLYNPRLLERPQIVV 280 (424)
T ss_pred CCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCcccc---CChHHHHHHHHHHHhhhchhccCCcEEEE
Confidence 6789999999942 234455666788999999999975210 0111122222122221 112458899
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
+||+|+.+ ..+. ++.+.+.++ .+++++||++|.|++++.+
T Consensus 281 ~NK~DL~~-~~e~-------l~~l~~~l~---~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 281 ANKMDLPE-AEEN-------LEEFKEKLG---PKVFPISALTGQGLDELLY 320 (424)
T ss_pred EeCCCCcC-CHHH-------HHHHHHHhC---CcEEEEeCCCCCCHHHHHH
Confidence 99999853 2221 233334444 3789999999999998643
No 290
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.50 E-value=4.9e-13 Score=144.39 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHH-HHHHHHhCCcEEEEe
Q psy3751 23 ESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFR-DNCISKLGETLIVRS 101 (967)
Q Consensus 23 ~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~-~~~~~~~gi~i~~~~ 101 (967)
+++.++.|++.+.. ++++|+||||+||+|+++++.++++ .++.++|+|+|.......+.+ +.+++++|++++++.
T Consensus 3 ~~~~~~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~~G---~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd 78 (311)
T TIGR00884 3 IEEAVEEIREQVGD-AKVIIALSGGVDSSVAAVLAHRAIG---DRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVD 78 (311)
T ss_pred HHHHHHHHHHHhCC-CcEEEEecCChHHHHHHHHHHHHhC---CCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEe
Confidence 34555666666655 8899999999999999999998753 479999999998754444444 455668999999998
Q ss_pred cchhhhhcccccCCC--CcccchhhcHHHHHHHHHHcC-CcEEEEeccchhhHhhhccc---cccccccCCCCCCCCCCc
Q psy3751 102 VEDSIMKGTVRLRKP--NTDSRNAAQSITLLETIKEFK-FDACIGGARRDEEKARAKER---IFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 102 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~R~des~~R~~~~---~~~~~~~~~~~~~~~~~p 175 (967)
....+.........| .|..|.......+.+.+++.| .+.+++||+.||-.+...-+ +.+..+..+. |
T Consensus 79 ~~e~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl-------~ 151 (311)
T TIGR00884 79 AKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGL-------P 151 (311)
T ss_pred CcHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhccChhHhhhccCccccC-------C
Confidence 876554332221111 122333344455777788888 99999999999875432100 0000000000 0
Q ss_pred cccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 176 ELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 176 ~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
.....-.++||.+++++||..|.+.+|+|..-.|
T Consensus 152 ----------~~~~~~ii~PL~~l~K~EVr~la~~lgLp~~~~~ 185 (311)
T TIGR00884 152 ----------EDMKLKLVEPLRELFKDEVRKLGKELGLPEEIVW 185 (311)
T ss_pred ----------hhhcCceEEEcccCcHHHHHHHHHHcCCCHHHhh
Confidence 0112347899999999999999999999976666
No 291
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.49 E-value=1.5e-13 Score=137.79 Aligned_cols=154 Identities=17% Similarity=0.141 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee--cC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN--TP 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~ 402 (967)
+||+++|.+|+|||||+++|++..-. .+... ...+.....+. ..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~-~~~~~~~~~~~~~~~ 46 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP---------------------------------TEYVP-TVFDNYSATVTVDGK 46 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---------------------------------CCCCC-ceeeeeEEEEEECCE
Confidence 58999999999999999999872110 00000 00011111112 22
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCcCH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~~~ 481 (967)
...+.++||||+++|.......+..+|++++|+|+++.. .......+.+..... ....++++|+||+|+.+...
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS-----SFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 356889999999987655555568899999999998711 111222222322222 22345999999999886432
Q ss_pred HHH-------HHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFY-------KRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~-------~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .-..++...+....+. .+++++||++|.|+.++
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 164 (171)
T cd00157 122 TLKKLEKGKEPITPEEGEKLAKEIGA--IGYMECSALTQEGVKEV 164 (171)
T ss_pred hhhhcccCCCccCHHHHHHHHHHhCC--eEEEEeecCCCCCHHHH
Confidence 110 0012333445555553 37899999999999984
No 292
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.49 E-value=1.8e-13 Score=140.96 Aligned_cols=134 Identities=20% Similarity=0.207 Sum_probs=92.8
Q ss_pred hHHHHHhhhhhhhhhhcccccccccchhhHHhhhc--ccCcccccccccCCCeeEEEEEecCCCChHHHHhHHHhccCCC
Q psy3751 274 VEDIIKEISVTQITERGATRIDDQNSEASMEKRKK--TEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNI 351 (967)
Q Consensus 274 l~~~i~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~ 351 (967)
+|+.+...+.+..||.+..++..+......|..+. ...........++...-.|++||.|++|||||++.|++....+
T Consensus 11 iEeeia~tpknKaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~sev 90 (365)
T COG1163 11 IEEEIARTPKNKATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEV 90 (365)
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccc
Confidence 45555556668888887777777776666666553 1111113455677788899999999999999999999843322
Q ss_pred ChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceEEEeeChhhHH-------HHHHHHhh
Q psy3751 352 FIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQ-------YTRNMITG 424 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~liDtpG~~~-------~~~~~~~~ 424 (967)
.... .+ |...-...+++++.+++++|+||.-. --+..++.
T Consensus 91 -------------------a~y~------FT--------Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 91 -------------------ADYP------FT--------TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred -------------------cccC------ce--------ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 1111 11 23333333889999999999999321 12557888
Q ss_pred cccCCEEEEEEeCCCC
Q psy3751 425 ASTADAVIILIDASKI 440 (967)
Q Consensus 425 ~~~aD~~ilVvda~~~ 440 (967)
++.||++++|+|+.++
T Consensus 138 ~R~ADlIiiVld~~~~ 153 (365)
T COG1163 138 ARNADLIIIVLDVFED 153 (365)
T ss_pred eccCCEEEEEEecCCC
Confidence 8999999999999974
No 293
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.49 E-value=2.7e-13 Score=149.60 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=116.8
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCC----------ChhhHHHHHHHHHHhCCcEEEEecchhhhh
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHN----------FPEVISFRDNCISKLGETLIVRSVEDSIMK 108 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~----------~pet~~~~~~~~~~~gi~i~~~~~~~~~~~ 108 (967)
+++|++|||+||+|+++++.+. +.++.++|++++.. .++..++++++|+++|++++++.....++.
T Consensus 2 kVlValSGGvDSsvla~lL~~~----G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~ 77 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQ----GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWD 77 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHc----CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHH
Confidence 6789999999999999999886 56799999998653 245678999999999999999987654432
Q ss_pred cc---------cccCCCCcccchh-hcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCC--CCCCCCCcc
Q psy3751 109 GT---------VRLRKPNTDSRNA-AQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQ--WNPKSQRPE 176 (967)
Q Consensus 109 ~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~--~~~~~~~p~ 176 (967)
.. ....+.+|..|.. +|...+.+.++++|.+.++|||++++..++ +++++.+..+. +.+... +
T Consensus 78 ~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~---~L~rg~d~~kDqsy~l~~l-~- 152 (346)
T PRK00143 78 RVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGR---ELLRGVDPNKDQSYFLYQL-T- 152 (346)
T ss_pred HHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccc---eEEEccCCCcChhhhhccC-C-
Confidence 11 1223456777776 566788999999999999999999987644 44444322110 000000 0
Q ss_pred ccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCC
Q psy3751 177 LWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILP 216 (967)
Q Consensus 177 ~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~ 216 (967)
.......++||.+++++||.+|+++++||+.
T Consensus 153 ---------~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~ 183 (346)
T PRK00143 153 ---------QEQLAKLLFPLGELTKPEVREIAEEAGLPVA 183 (346)
T ss_pred ---------HHHhcceeccCccCCHHHHHHHHHHcCCCcC
Confidence 0111247899999999999999999999864
No 294
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.49 E-value=2.7e-13 Score=134.08 Aligned_cols=147 Identities=18% Similarity=0.105 Sum_probs=94.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--C
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP--K 403 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~ 403 (967)
||+++|++|+|||||+++|++..-. . ...+. +.+.....+..+ .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~--~--------------------------~~~~~------~~~~~~~~~~~~~~~ 46 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV--E--------------------------EYDPT------IEDSYRKTIVVDGET 46 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--c--------------------------CcCCC------hhHeEEEEEEECCEE
Confidence 5899999999999999999862200 0 00000 001111122233 3
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcC--CCeEEEEEecCCccCcC
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLR--IKHIIIAVNKMDLINYN 480 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~--~~~iivviNK~D~~~~~ 480 (967)
..+.++|+||+.++.......+..+|++++|+|.++.. ...+....+... ...+ ..++++|+||+|+.+..
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRE------SFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 56889999999988887777888999999999998721 111222222222 2222 35599999999998632
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+. ..+....+.+..+ .+++++|+++|.|+.++
T Consensus 121 ~~----~~~~~~~~~~~~~---~~~~~~S~~~~~~i~~l 152 (160)
T cd00876 121 QV----SKEEGKALAKEWG---CPFIETSAKDNINIDEV 152 (160)
T ss_pred ee----cHHHHHHHHHHcC---CcEEEeccCCCCCHHHH
Confidence 21 1233444555555 48999999999999984
No 295
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=7.9e-13 Score=125.68 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=111.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+++|..++||||++.++........+-. +. .++.. ..+..|+-..+..++..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~-----------~~----------~~s~k--~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEAD-----------AS----------SVSGK--GKRPTTVAMDFGSIELD 65 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeecc-----------cc----------ccccc--cccceeEeecccceEEc
Confidence 446899999999999999999997543221000 00 00111 13346777777777766
Q ss_pred C-ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc-C
Q psy3751 403 K-RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY-N 480 (967)
Q Consensus 403 ~-~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~-~ 480 (967)
+ ..+.|+|||||++|-..+....+.++.+|++||++. ......++.+.+.......|++|++||.|+.+. +
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~-------~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~p 138 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR-------PITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALP 138 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCC-------CcchHHHHHHHHHhhccCCCEEEEeeccccCCCCC
Confidence 5 789999999999998888888899999999999998 443344566666666663459999999999874 3
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.+. ++++++.-. .++|+|+++|.++++..+
T Consensus 139 pe~-------i~e~l~~~~-~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 139 PEK-------IREALKLEL-LSVPVIEIDATEGEGARD 168 (187)
T ss_pred HHH-------HHHHHHhcc-CCCceeeeecccchhHHH
Confidence 322 223332221 346999999999999887
No 296
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.48 E-value=3e-13 Score=137.86 Aligned_cols=150 Identities=20% Similarity=0.203 Sum_probs=94.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|..|+|||||+++|+.. .+. .+....++.+.....+..+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~------------------------~~~---------~~~~~t~~~~~~~~~~~~~~~ 47 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTED------------------------EFS---------ESTKSTIGVDFKIKTVYIENK 47 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC------------------------CCC---------CCCCCceeeEEEEEEEEECCE
Confidence 47999999999999999999861 110 0001111222222223333
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~ 480 (967)
...+.++||||+++|.......+..+|++|+|+|.++.. ........+...... ...++|+|.||+|+.+..
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~------s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE------SFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH------HHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 346789999999998888888889999999999998711 111112222222222 124589999999987532
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
... ......+.+..++ +++++||++|.|++++.
T Consensus 122 ~v~----~~~~~~~~~~~~~---~~~evSa~~~~~i~~~f 154 (188)
T cd04125 122 VVD----SNIAKSFCDSLNI---PFFETSAKQSINVEEAF 154 (188)
T ss_pred cCC----HHHHHHHHHHcCC---eEEEEeCCCCCCHHHHH
Confidence 111 1122234444554 78999999999999863
No 297
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.48 E-value=3.7e-13 Score=140.10 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=93.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...+||+++|..|+|||||+++++... + ..+....+..+.....+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~------------------------f---------~~~~~~tig~~~~~~~~~~ 57 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE------------------------F---------EKKYEPTIGVEVHPLDFFT 57 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC------------------------C---------CCccCCccceeEEEEEEEE
Confidence 566899999999999999999987511 1 0111111112222222322
Q ss_pred --CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH-HcCCCeEEEEEecCCccC
Q psy3751 402 --PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH-LLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 --~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~-~~~~~~iivviNK~D~~~ 478 (967)
....+.+|||||+++|.......++.+|++|+|+|.++.. .+ ......+..+. ...-.++++|.||+|+.+
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~-----s~-~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-----TY-KNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHH-----HH-HHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 2357889999999998766666678999999999999821 11 11112222221 122234999999999864
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .. +++ .+.+..+ .+++++||++|.|+.++
T Consensus 132 ~~v-~~----~~~-~~~~~~~---~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 132 RQV-KA----KQV-TFHRKKN---LQYYEISAKSNYNFEKP 163 (219)
T ss_pred ccC-CH----HHH-HHHHhcC---CEEEEcCCCCCCCHHHH
Confidence 211 11 112 2333333 47899999999999985
No 298
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.48 E-value=2.6e-13 Score=135.63 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=91.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
++|+++|.+|+|||||+++|.+..-.- . .+.. .+ +.....+..+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~-------------------------~-~~~t-----~~---~~~~~~~~~~~~ 47 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE-------------------------S-YDPT-----IE---DSYRKQVEIDGR 47 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-------------------------c-cCCc-----ch---heEEEEEEECCE
Confidence 589999999999999999998621100 0 0000 00 0001112222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH----HcCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH----LLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~----~~~~~~iivviNK~D~~~ 478 (967)
...+.+|||||+++|.......+..+|++++|+|.++.. .. ........... ..+.| +++|+||+|+.+
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~-----s~-~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~ 120 (168)
T cd04177 48 QCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA-----SL-NELGELREQVLRIKDSDNVP-MVLVGNKADLED 120 (168)
T ss_pred EEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhhCCCCCC-EEEEEEChhccc
Confidence 246789999999999887777788999999999998721 00 11111111111 12344 889999999875
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..... .++...+.+..+ ..+++++||++|.|++++
T Consensus 121 ~~~~~----~~~~~~~~~~~~--~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 121 DRQVS----REDGVSLSQQWG--NVPFYETSARKRTNVDEV 155 (168)
T ss_pred cCccC----HHHHHHHHHHcC--CceEEEeeCCCCCCHHHH
Confidence 33211 122333444444 258999999999999985
No 299
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.48 E-value=1.1e-12 Score=133.75 Aligned_cols=153 Identities=19% Similarity=0.158 Sum_probs=94.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeece-eeeecC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAY-RYFNTP 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~~~ 402 (967)
.+||+++|..++|||||+.++... .| .++.. .|+...+ ..+..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~------------------------~f---------~~~~~--~t~~~~~~~~~~~~ 47 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTN------------------------AF---------PKEYI--PTVFDNYSAQTAVD 47 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhC------------------------CC---------CcCCC--CceEeeeEEEEEEC
Confidence 478999999999999999999861 11 00101 1121111 112223
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH-HHHHHH-HcCCCeEEEEEecCCccC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKR-HSIIAH-LLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~-~~~~~~-~~~~~~iivviNK~D~~~ 478 (967)
+ ..+.+|||||+++|.......++.+|++|+|+|.++.. .+ ..... ...... ...-.++++|.||.|+.+
T Consensus 48 ~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~-----Sf-~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 48 GRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS-----SY-ENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred CEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 3 46789999999999877667788999999999998721 01 11111 111111 112234999999999965
Q ss_pred cCHH--HHHH------HHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQI--FYKR------IVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~--~~~~------i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.... ...+ ..++.+.+.+..+. .+++++||++|.|++++
T Consensus 122 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~e~SAk~g~~v~e~ 168 (191)
T cd01875 122 DADTLKKLKEQGQAPITPQQGGALAKQIHA--VKYLECSALNQDGVKEV 168 (191)
T ss_pred ChhhHHHHhhccCCCCCHHHHHHHHHHcCC--cEEEEeCCCCCCCHHHH
Confidence 3221 0000 11233445555542 37999999999999985
No 300
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.48 E-value=2.9e-13 Score=142.83 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=90.5
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeE-eeceeeeecCC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITI-DVAYRYFNTPK 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti-~~~~~~~~~~~ 403 (967)
++|+++|..|+|||||++++++. .|.- +.. .|+ +.....+..++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~------------------------~f~~---------~y~--pTi~d~~~k~~~i~~ 45 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGG------------------------RFEE---------QYT--PTIEDFHRKLYSIRG 45 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcC------------------------CCCC---------CCC--CChhHhEEEEEEECC
Confidence 47999999999999999999861 1100 000 011 11112233333
Q ss_pred --ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC-CCCCCCchhhHHHHHHHHH--------HcCCCeEEEEEe
Q psy3751 404 --RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK-FNPSVNLLTQTKRHSIIAH--------LLRIKHIIIAVN 472 (967)
Q Consensus 404 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~-~~~~~g~~~~t~~~~~~~~--------~~~~~~iivviN 472 (967)
..+.||||+|+++|.......+..+|++|+|+|.++.. |+ -..+..+.+...+ ...-.++|+|+|
T Consensus 46 ~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~----~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 46 EVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFE----EVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred EEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHH----HHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 56789999999988765555678899999999998721 11 0111111221111 111245999999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+....+... +++.+++... ...+++++||++|.|++++
T Consensus 122 K~Dl~~~~~v~~----~ei~~~~~~~--~~~~~~evSAktg~gI~el 162 (247)
T cd04143 122 KADRDFPREVQR----DEVEQLVGGD--ENCAYFEVSAKKNSNLDEM 162 (247)
T ss_pred CccchhccccCH----HHHHHHHHhc--CCCEEEEEeCCCCCCHHHH
Confidence 999975322222 2233333221 1347899999999999985
No 301
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.47 E-value=3.8e-13 Score=132.67 Aligned_cols=147 Identities=20% Similarity=0.255 Sum_probs=93.2
Q ss_pred EEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-CceEE
Q psy3751 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-KRKFI 407 (967)
Q Consensus 329 ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~~~ 407 (967)
++|++|+|||||+++|++..... .....+.|.+.....+... ...+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--------------------------------VSPVPGTTTDPVEYVWELGPLGPVV 48 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--------------------------------cCCCCCcEECCeEEEEEecCCCcEE
Confidence 58999999999999998722110 1112234444433334433 67899
Q ss_pred EeeChhhHHHH-------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 408 IADTPGHEQYT-------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 408 liDtpG~~~~~-------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
++||||+.++. ..+...++.+|++++|+|+.. ................+.+ +++|+||+|+....
T Consensus 49 ~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~-------~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~ 120 (163)
T cd00880 49 LIDTPGIDEAGGLGREREELARRVLERADLILFVVDADL-------RADEEEEKLLELLRERGKP-VLLVLNKIDLLPEE 120 (163)
T ss_pred EEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCC-------CCCHHHHHHHHHHHhcCCe-EEEEEEccccCChh
Confidence 99999965543 344556789999999999998 4333333334444445555 89999999998643
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. ....+. ...........+++++||.++.|+.++
T Consensus 121 ~~--~~~~~~--~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 121 EE--EELLEL--RLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred hH--HHHHHH--HHhhcccccCCceEEEeeeccCCHHHH
Confidence 22 111110 011112234568999999999999874
No 302
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.47 E-value=2.6e-13 Score=121.18 Aligned_cols=96 Identities=25% Similarity=0.335 Sum_probs=83.9
Q ss_pred CccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeecc
Q psy3751 637 RPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDS 715 (967)
Q Consensus 637 ~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~ 715 (967)
|++.+++|+|+|.+|++ .+|.+||++++|+++.+++|++.+|..++| +++.. |+++++||.|.|+|.+++|++++.
T Consensus 1 ~~k~~~~f~A~v~vl~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~-p~~l~~g~~a~v~l~~~~pi~ve~ 77 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDHPKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK-PKFLKPGDRAVVELEFQKPICVEP 77 (99)
T ss_dssp SSEEEEEEEEEEEESSGSS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE--SEB-TTEEEEEEEEEEEEEEETT
T ss_pred CCcccCEEEEEEEEEcCCccccCCCccceEEeeceeeEEEEeeeeccc--ccccc-ccccccccccccceeeccceeeec
Confidence 56789999999999997 899999999999999999999999999998 44333 899999999999999999999999
Q ss_pred ccCccCCccceeecccccccceEEEEEe
Q psy3751 716 YDNIRSTGSFILIDEITFQTVAAVYIIG 743 (967)
Q Consensus 716 ~~~~~~~grfil~d~~~~~~~~~~~~vg 743 (967)
|+ ||+||| .++|+|.|.+.-
T Consensus 78 ~~------Rf~lR~--~~~Tia~G~V~~ 97 (99)
T PF03143_consen 78 FS------RFILRD--GGKTIAVGVVTK 97 (99)
T ss_dssp TT------EEEEEE--TTEEEEEEEEEE
T ss_pred Cc------eEEEcc--CCeEEEEEEEEE
Confidence 76 999998 578999988764
No 303
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.47 E-value=4.4e-13 Score=134.12 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=95.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeece-eeeecC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAY-RYFNTP- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~~~- 402 (967)
+||+++|..++|||||+.+++.. .|. .+.. .|+...+ ..+..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~------------------------~f~---------~~~~--~Ti~~~~~~~~~~~~ 46 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN------------------------KFP---------TDYI--PTVFDNFSANVSVDG 46 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcC------------------------CCC---------CCCC--CcceeeeEEEEEECC
Confidence 68999999999999999999861 110 0111 1111111 112223
Q ss_pred -CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc-CCCeEEEEEecCCccCcC
Q psy3751 403 -KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL-RIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~-~~~~iivviNK~D~~~~~ 480 (967)
..++.+|||+|+++|.......++.+|++|+|+|.++.. .+..-....+..++.. .-.++|+|.||+|+.+..
T Consensus 47 ~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~-----Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 47 NTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRA-----SYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred EEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHH-----HHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccCh
Confidence 356789999999999887777889999999999998721 1111111222222221 224599999999996532
Q ss_pred HHH------HHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIF------YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~------~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .....++.+.+.+..+. .+++.+||++|.||+++
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~E~SAk~~~nV~~~ 164 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGA--AAYIECSSKTQQNVKAV 164 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCC--CEEEECCCCcccCHHHH
Confidence 100 00123344556666554 26899999999999985
No 304
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.47 E-value=4.9e-13 Score=134.37 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=100.5
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChh----hHHHHHHHHHHhCCcE--EEEecchhhhhcc--
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPE----VISFRDNCISKLGETL--IVRSVEDSIMKGT-- 110 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pe----t~~~~~~~~~~~gi~i--~~~~~~~~~~~~~-- 110 (967)
+++|+||||+||+++++++.+. +.++.++|+|+|....+ ....+.+....|++++ .++.....+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 76 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFFVQKEIYG 76 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHHHHHHHHH
Confidence 4689999999999999999986 66899999999986443 1222333345676555 3444332111111
Q ss_pred cccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCc
Q psy3751 111 VRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGEN 190 (967)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 190 (967)
.......|..|.........+.+++.|.+.+++|++.+|-.....++..... ..++.
T Consensus 77 ~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~-----------------------~~~~~ 133 (177)
T cd01712 77 YGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLVIS-----------------------SGTDL 133 (177)
T ss_pred hCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhhcc-----------------------cCCCC
Confidence 1112233444444445557777888999999999999985443333322211 01224
Q ss_pred eEEeeCCCCcHHHHHHHHHHcCCCCCCc
Q psy3751 191 IRVFPISNWTELDIWQYIEREKIILPSL 218 (967)
Q Consensus 191 ~~i~Pl~~wt~~dV~~yi~~~~lp~~~l 218 (967)
..++|++.|+++||+.|.+++|++.-..
T Consensus 134 ~i~rPl~~~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 134 PILRPLIGFDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred eEECCCCCCCHHHHHHHHHHcCCcceec
Confidence 6789999999999999999999865443
No 305
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.46 E-value=6e-13 Score=142.16 Aligned_cols=165 Identities=16% Similarity=0.089 Sum_probs=114.9
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchhhhhcccccCCC-
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDSIMKGTVRLRKP- 116 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~~~~~~~~~~~~- 116 (967)
+++|+||||+||+++++++.+++ +.++.++|+|+|.......+.++++++++++ +++++.....+.........|
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---G~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~fl~~l~~v~npe 77 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---GDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASERFLSALKGVTDPE 77 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---CCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHhcCCCCHH
Confidence 47899999999999999999974 3479999999998766677889999999986 999998876554432221111
Q ss_pred -CcccchhhcHHHHHHHHHHcC-CcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCC-CCCceEE
Q psy3751 117 -NTDSRNAAQSITLLETIKEFK-FDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVH-PGENIRV 193 (967)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~i 193 (967)
.|..|...+...+.+.+++.| .+.+++||+.||-.+...++... +. .+++.+- .+.. ......+
T Consensus 78 ~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~-~~------IKs~~n~------~Gl~a~~~~~vi 144 (295)
T cd01997 78 EKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSA-DT------IKSHHNV------GGLPEDMKLKLI 144 (295)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhccccccc-cc------ccccccc------cccchHhhCCcc
Confidence 122334445566788888889 99999999999875433221110 00 0000000 0000 1123468
Q ss_pred eeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 194 FPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 194 ~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
+||.+++++||.+|.++.|+|..-++
T Consensus 145 ~PL~~l~K~EVR~lar~lGLp~~~~~ 170 (295)
T cd01997 145 EPLRDLFKDEVRELGRELGLPEEIVE 170 (295)
T ss_pred cccccCcHHHHHHHHHHcCCCchhhC
Confidence 99999999999999999999987666
No 306
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.46 E-value=2.5e-13 Score=135.36 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=87.2
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++|.+|+|||||+++++.. . +.-.+ ..... +.......+......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~--~----------------------~~~~~-~~t~~-------~~~~~~~~~~~~~~~ 48 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTK--R----------------------FIGEY-DPNLE-------SLYSRQVTIDGEQVS 48 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhC--c----------------------ccccc-CCChH-------HhceEEEEECCEEEE
Confidence 5899999999999999999851 0 00000 00000 000001112222345
Q ss_pred EEEeeChhhHH-HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHH-----cCCCeEEEEEecCCccC
Q psy3751 406 FIIADTPGHEQ-YTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHL-----LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 406 ~~liDtpG~~~-~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~-----~~~~~iivviNK~D~~~ 478 (967)
+.+|||||+.. +...+...++.+|++|+|+|+++ ... ......+..... .++| +|+|+||+|+..
T Consensus 49 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 120 (165)
T cd04146 49 LEILDTAGQQQADTEQLERSIRWADGFVLVYSITD-------RSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLH 120 (165)
T ss_pred EEEEECCCCcccccchHHHHHHhCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHH
Confidence 78999999985 33445667789999999999987 211 111222222222 2344 899999999864
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCC-ccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGD-NIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~-gi~~l 519 (967)
.... ..++...+.+..+. +++++||++|. |++++
T Consensus 121 ~~~v----~~~~~~~~~~~~~~---~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 121 YRQV----STEEGEKLASELGC---LFFEVSAAEDYDGVHSV 155 (165)
T ss_pred hCcc----CHHHHHHHHHHcCC---EEEEeCCCCCchhHHHH
Confidence 3211 11223344555554 89999999994 89985
No 307
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.46 E-value=2.4e-13 Score=160.34 Aligned_cols=139 Identities=24% Similarity=0.256 Sum_probs=96.4
Q ss_pred ecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceEEEee
Q psy3751 331 GSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIAD 410 (967)
Q Consensus 331 G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~liD 410 (967)
|++|+|||||+|+|++..- ......|+|++.....++.++.+++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---------------------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvD 47 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---------------------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVD 47 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---------------------------------eecCCCCeEEEEEEEEEEECCeEEEEEE
Confidence 8999999999999987211 1112368898888777888888999999
Q ss_pred ChhhHHHHHH-----HHh---hcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 411 TPGHEQYTRN-----MIT---GASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 411 tpG~~~~~~~-----~~~---~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
|||+.++... +.+ ....+|++++|+|+++. . ...+........++| +++|+||+|+.+...
T Consensus 48 tPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--------e-r~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~- 116 (591)
T TIGR00437 48 LPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--------E-RNLYLTLQLLELGIP-MILALNLVDEAEKKG- 116 (591)
T ss_pred CCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--------h-hhHHHHHHHHhcCCC-EEEEEehhHHHHhCC-
Confidence 9998765321 111 22478999999999861 1 112222333446766 899999999864322
Q ss_pred HHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+..+.+.+.+.++. +++++||++|.|++++.
T Consensus 117 ----i~~d~~~L~~~lg~---pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 117 ----IRIDEEKLEERLGV---PVVPTSATEGRGIERLK 147 (591)
T ss_pred ----ChhhHHHHHHHcCC---CEEEEECCCCCCHHHHH
Confidence 11234455556665 89999999999999853
No 308
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.46 E-value=9.7e-13 Score=132.50 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=96.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeece-eeee
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAY-RYFN 400 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~ 400 (967)
+..+||+++|..++|||||+.+++.. .|. .+. ..|+...+ ..+.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~------------------------~f~---------~~~--~pT~~~~~~~~~~ 47 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKD------------------------CFP---------ENY--VPTVFENYTASFE 47 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhC------------------------CCC---------Ccc--CCceeeeeEEEEE
Confidence 45679999999999999999999861 110 000 01111111 1222
Q ss_pred cC--CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCcc
Q psy3751 401 TP--KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLI 477 (967)
Q Consensus 401 ~~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~ 477 (967)
.+ ...+.+|||+|.+.|.......++.+|++|+|+|.++.. .+..-....+..... ..-.++|+|.||+|+.
T Consensus 48 ~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~-----Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 48 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE-----TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred ECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 33 346789999999998777777789999999999998721 111100112222222 1224599999999986
Q ss_pred CcCHHHH--------HHHHHHHHHHHHHcCCccceEEeccccCCCc-cccc
Q psy3751 478 NYNQIFY--------KRIVYAYKKFAEDIHFQNINTIPISALNGDN-IISA 519 (967)
Q Consensus 478 ~~~~~~~--------~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~g-i~~l 519 (967)
+...... .-..++.+++.++++. .+++.+||++|.| ++++
T Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~E~SAk~~~n~v~~~ 171 (182)
T cd04172 123 TDLTTLVELSNHRQTPVSYDQGANMAKQIGA--ATYIECSALQSENSVRDI 171 (182)
T ss_pred cChhhHHHHHhcCCCCCCHHHHHHHHHHcCC--CEEEECCcCCCCCCHHHH
Confidence 4211000 0122345666777663 3799999999998 9985
No 309
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.46 E-value=5.5e-13 Score=133.80 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeece--eeeecC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAY--RYFNTP 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~~~ 402 (967)
+||+++|..|+|||||+.+++.. . |. .+....+ .+... ..+...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~--~----------------------f~---------~~~~~t~-~~~~~~~~~~~~~ 47 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTN--A----------------------FP---------GEYIPTV-FDNYSANVMVDGK 47 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--C----------------------CC---------CcCCCcc-eeeeEEEEEECCE
Confidence 68999999999999999999861 1 10 0000000 00000 112222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCcCH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~~~ 481 (967)
...+.+|||||+++|.......++.+|++|+|+|.++.. .+......++..... ..-.++|+|.||+|+.+...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-----sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~ 122 (174)
T cd01871 48 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA-----SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 122 (174)
T ss_pred EEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChh
Confidence 356789999999998777767788999999999998721 111111112222222 22235999999999964221
Q ss_pred HHHHH---------HHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKR---------IVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~---------i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+. ..++.+.+.+.++. .+++++||++|.|++++
T Consensus 123 -~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~ 166 (174)
T cd01871 123 -TIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQKGLKTV 166 (174)
T ss_pred -hHHHHhhccCCCCCHHHHHHHHHHcCC--cEEEEecccccCCHHHH
Confidence 1111 12233445555542 48899999999999984
No 310
>PRK09866 hypothetical protein; Provisional
Probab=99.46 E-value=6.8e-13 Score=149.76 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=79.1
Q ss_pred CceEEEeeChhh-H----HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCC-CeEEEEEecCCc
Q psy3751 403 KRKFIIADTPGH-E----QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDL 476 (967)
Q Consensus 403 ~~~~~liDtpG~-~----~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~-~~iivviNK~D~ 476 (967)
..+++|+||||. . .+.+.|...+..+|++++|||+.. +......+.+..++..+. .++|+|+||+|+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~-------~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ-------LKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC-------CCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 368999999993 2 245667788999999999999987 555556666666666663 359999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+...+.+...+...+.+.+++...++||||++|.|++.+
T Consensus 302 ~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~L 344 (741)
T PRK09866 302 QDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRA 344 (741)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Confidence 7533322344555554444444444457899999999999984
No 311
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.45 E-value=7e-13 Score=134.15 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=92.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
.||+++|++|+|||||+++|+...-.. .+ ..... +.....+..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~------------------------~~-~~t~~---------~~~~~~~~~~~~ 47 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE------------------------SY-YPTIE---------NTFSKIIRYKGQ 47 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc------------------------cc-Ccchh---------hhEEEEEEECCE
Confidence 589999999999999999998621000 00 00000 0001112222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH-HHH-HHHHHHc---CCCeEEEEEecCCcc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT-KRH-SIIAHLL---RIKHIIIAVNKMDLI 477 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t-~~~-~~~~~~~---~~~~iivviNK~D~~ 477 (967)
+..+.++||||+.+|.......+..+|.+++|+|.++ ....+. ... ..++... +.| +|+|+||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS-------RKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhh
Confidence 3467899999999988777778889999999999987 221111 111 1222222 334 89999999987
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
...+.. ..+...+.+.++ .+++++||++|.|+.++.
T Consensus 120 ~~~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 120 TQRQVS----TEEGKELAESWG---AAFLESSARENENVEEAF 155 (180)
T ss_pred hcCccC----HHHHHHHHHHcC---CeEEEEeCCCCCCHHHHH
Confidence 532211 112333444455 388999999999999853
No 312
>KOG0394|consensus
Probab=99.45 E-value=6.1e-14 Score=131.87 Aligned_cols=160 Identities=21% Similarity=0.228 Sum_probs=104.3
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.+...++|+++|.+|+|||||+|++.. .+++. .....|..++-...+
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~----------~kF~~-----------------------qykaTIgadFltKev 51 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVN----------KKFSQ-----------------------QYKATIGADFLTKEV 51 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHH----------HHHHH-----------------------HhccccchhheeeEE
Confidence 346789999999999999999999987 11111 111223334444445
Q ss_pred ecCCce--EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCC-CCCCCCCchhhHH-HHHHHHHHcC--CCeEEEEEec
Q psy3751 400 NTPKRK--FIIADTPGHEQYTRNMITGASTADAVIILIDASKI-KFNPSVNLLTQTK-RHSIIAHLLR--IKHIIIAVNK 473 (967)
Q Consensus 400 ~~~~~~--~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~-~~~~~~g~~~~t~-~~~~~~~~~~--~~~iivviNK 473 (967)
..+++. +.||||+|+++|..--....+.||.++||.|.+.. .|+ -....+ |.+..+.... .=|+|++.||
T Consensus 52 ~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe----~L~~Wr~EFl~qa~~~~Pe~FPFVilGNK 127 (210)
T KOG0394|consen 52 QVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFE----NLENWRKEFLIQASPQDPETFPFVILGNK 127 (210)
T ss_pred EEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhc----cHHHHHHHHHHhcCCCCCCcccEEEEccc
Confidence 555554 56999999999988777778999999999998872 232 222222 2222222111 1139999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+|+.+-.. + ....+..+...+..| ++|++.+||+.+.||++..
T Consensus 128 iD~~~~~~-r-~VS~~~Aq~WC~s~g--nipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 128 IDVDGGKS-R-QVSEKKAQTWCKSKG--NIPYFETSAKEATNVDEAF 170 (210)
T ss_pred ccCCCCcc-c-eeeHHHHHHHHHhcC--CceeEEecccccccHHHHH
Confidence 99865211 1 112233344555554 5799999999999999853
No 313
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.45 E-value=6.7e-13 Score=135.22 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=91.2
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeece-eeeecC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAY-RYFNTP- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~~~- 402 (967)
.||+++|..|+|||||+++|++. .+. .+.. .|+...+ ..+..+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~------------------------~~~---------~~~~--~t~~~~~~~~i~~~~ 45 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRG------------------------YFP---------QVYE--PTVFENYVHDIFVDG 45 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC------------------------CCC---------CccC--CcceeeeEEEEEECC
Confidence 37999999999999999999861 110 0000 0111111 111222
Q ss_pred -CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCcC
Q psy3751 403 -KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~~ 480 (967)
...+.|+||||++.|.......++.+|++|+|+|.++.. .+.......+..+.. ..-.++|+|.||+|+.+..
T Consensus 46 ~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~-----sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 46 LHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD-----SLENVESKWLGEIREHCPGVKLVLVALKCDLREAR 120 (189)
T ss_pred EEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCh
Confidence 356889999999988665555678999999999998721 111111112222222 2223499999999997643
Q ss_pred HHHHH--------HHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYK--------RIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~--------~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..-. ...++...+.+..+ ..+++++||++|.|++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~v~e~ 165 (189)
T cd04134 121 NERDDLQRYGKHTISYEEGLAVAKRIN--ALRYLECSAKLNRGVNEA 165 (189)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC--CCEEEEccCCcCCCHHHH
Confidence 21100 00122233444444 247899999999999985
No 314
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.45 E-value=1.6e-12 Score=129.71 Aligned_cols=148 Identities=21% Similarity=0.218 Sum_probs=93.3
Q ss_pred EEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceE
Q psy3751 327 FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKF 406 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 406 (967)
|+++|++|+|||||++.|++..... ..+...+.|.+...... + ..+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~--~-~~~ 47 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA-------------------------------RTSKTPGKTQLINFFNV--N-DKF 47 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee-------------------------------eecCCCCcceeEEEEEc--c-CeE
Confidence 8999999999999999998411100 00111233443332222 2 289
Q ss_pred EEeeChhhHH----------HH---HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 407 IIADTPGHEQ----------YT---RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 407 ~liDtpG~~~----------~~---~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
.++||||+.. +. ...+......+.+++|+|... .......+.+..+...+.+ +++|+||
T Consensus 48 ~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-------~~~~~~~~~~~~l~~~~~~-vi~v~nK 119 (170)
T cd01876 48 RLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRH-------GPTEIDLEMLDWLEELGIP-FLVVLTK 119 (170)
T ss_pred EEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCc-------CCCHhHHHHHHHHHHcCCC-EEEEEEc
Confidence 9999999532 22 222333346789999999987 4444455556666666766 8999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+.... ........+...++. .....+++++||+++.|+.++
T Consensus 120 ~D~~~~~--~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~~~~~~~~l 162 (170)
T cd01876 120 ADKLKKS--ELAKALKEIKKELKL-FEIDPPIILFSSLKGQGIDEL 162 (170)
T ss_pred hhcCChH--HHHHHHHHHHHHHHh-ccCCCceEEEecCCCCCHHHH
Confidence 9997432 223344444444442 223458899999999999884
No 315
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.45 E-value=3.2e-13 Score=135.60 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+|++++|..|+|||||+.+++... +. .+.. ..+.+.....+..+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~------------------------~~---------~~~~-~t~~~~~~~~~~~~~~ 46 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG------------------------YP---------TEYV-PTAFDNFSVVVLVDGK 46 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC------------------------CC---------CCCC-CceeeeeeEEEEECCE
Confidence 479999999999999999997611 10 0000 01111111112222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCcCH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~~~ 481 (967)
...+.+|||||+++|.......++.+|++|+|+|.++.. .+.......+..... ..-.++++|.||+|+.....
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~-----sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPS-----SFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHH-----HHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh
Confidence 346789999999988776666778999999999998721 111111122222222 12234899999999874321
Q ss_pred HH--------HHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IF--------YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~--------~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. ..-..++...+.+..+. .+++++||++|.|++++
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~e~Sa~~~~~v~~l 165 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIGA--CEYIECSALTQKNLKEV 165 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhCC--CeEEEEeCCCCCCHHHH
Confidence 00 00011233445555553 37899999999999985
No 316
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.44 E-value=3.4e-13 Score=117.44 Aligned_cols=82 Identities=32% Similarity=0.438 Sum_probs=75.4
Q ss_pred ceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEeCccccceeecCCeEEEEEcc--ccC
Q psy3751 549 LRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPS--GKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLD 624 (967)
Q Consensus 549 ~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~--~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~ 624 (967)
|+|||+++|+..+.| ++++|+|++|++++||+|.+.|. +.+.+|++|+.++.++++|.|||+|+++|++ ..+
T Consensus 1 ~r~~V~~v~~~~g~G----~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~ 76 (87)
T cd03697 1 FLMPIEDVFSIPGRG----TVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKRED 76 (87)
T ss_pred CEeeEEEEEeCCCcE----EEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHH
Confidence 689999999988877 89999999999999999999986 5789999999999999999999999999985 467
Q ss_pred CCCCcccccC
Q psy3751 625 ISRGNMLVSP 634 (967)
Q Consensus 625 i~~G~vl~~~ 634 (967)
++||++|+++
T Consensus 77 v~rG~vl~~~ 86 (87)
T cd03697 77 VERGMVLAKP 86 (87)
T ss_pred cCCccEEecC
Confidence 9999999875
No 317
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.44 E-value=5.6e-13 Score=135.73 Aligned_cols=201 Identities=16% Similarity=0.142 Sum_probs=149.7
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEE-Ee---cccccccchhHHHHHHHHHHHHhc
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHI-FV---GKRFKKHSIAQYIINRIIVKCAFK 812 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~ 812 (967)
+++.+||.|+|+.+.||+...++|+++|-+|..+.-++.+-.+......+ +. ...+......++.+.+.++++|++
T Consensus 3 h~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~RTkdHPviE~l~~e~~~f~~fD~iYE~heqFe~VYd~I~~~LveaAke 82 (488)
T COG3956 3 HTITVVGLGAGDKDQLTLGIYKLLKNQDNLYVRTKDHPVIEELDEEGIKFSFFDDIYETHEQFEAVYDFIAADLVEAAKE 82 (488)
T ss_pred ceEEEEeeCCCchhhcchHHHHHHhccceEEEecCCCchHHHHHhhcceeeehhHHHhhhhhHHHHHHHHHHHHHHhhcc
Confidence 47899999999999999999999999999999887776654443333322 22 223344455677787888888887
Q ss_pred CCeEEEEEcCCCCCCC-chHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccccccccCC
Q psy3751 813 YNLVVRLKGGDPMLFG-RTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIP 891 (967)
Q Consensus 813 g~~Vv~l~~GDP~~~~-~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (967)
+++|+.++|.|.+.. +...|+++..+.+|.|.|+||.|.+-+.+..+.+....+.+..+.. ......+..
T Consensus 83 -kdIvYAVPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG~q~vDa~-----~l~~~il~v--- 153 (488)
T COG3956 83 -KDIVYAVPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEGFQIVDAT-----DLSNDILDV--- 153 (488)
T ss_pred -cceEEecCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccCceEeccc-----hhhHHHHhh---
Confidence 899999999999999 5556778888889999999999999999999999887655443332 222111211
Q ss_pred CCCcEEEEecccc--HHHHHHHHHhcCCCCCCcEEEEEecCCCCeE-EEEEehhhHHHhh
Q psy3751 892 ISDTLVEYMGGNN--IFLTAKKLLKLGFLPTTPVIVVENCSLSNQK-ITRLILLDLKKKI 948 (967)
Q Consensus 892 ~~~t~vl~~~~~~--~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~-i~~~~l~~l~~~~ 948 (967)
...+++.....+ +..+.-.|+++ ||+|++|.++..+|..+|. +++..|.||-...
T Consensus 154 -r~hivItQVY~~miAs~vKltLmE~-ypDDyev~ivtaags~~ee~v~tvPLyELDr~~ 211 (488)
T COG3956 154 -RLHIVITQVYDQMIASDVKLTLMEY-YPDDYEVYIVTAAGSENEESVRTVPLYELDRQS 211 (488)
T ss_pred -hhceeehhHHHHHHHHhHHHHHHHh-CCCCceEEEEEeccCCCccceeeecceeechhh
Confidence 122344333222 44566778888 9999999999999999987 8888999997543
No 318
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.44 E-value=4.3e-13 Score=116.56 Aligned_cols=81 Identities=25% Similarity=0.368 Sum_probs=74.5
Q ss_pred ceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC----cEEEEEEEEeCccccceeecCCeEEEEEcc--c
Q psy3751 549 LRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDMAITGQSVTLIIKE--Y 622 (967)
Q Consensus 549 ~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~----~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~ 622 (967)
|+|+|+++|+..+.| ++++|+|++|.+++||++.++|.+ ..++|++|++++.++++|.|||+|+++|++ .
T Consensus 1 ~~~~I~~vf~v~g~G----tVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~ 76 (87)
T cd03694 1 AEFQIDEIYSVPGVG----TVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDR 76 (87)
T ss_pred CEEEEEeEEEcCCcc----eEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCH
Confidence 579999999988777 899999999999999999999983 689999999999999999999999999985 5
Q ss_pred cCCCCCccccc
Q psy3751 623 LDISRGNMLVS 633 (967)
Q Consensus 623 ~~i~~G~vl~~ 633 (967)
.+++||++|++
T Consensus 77 ~~i~~G~vl~~ 87 (87)
T cd03694 77 SLLRKGMVLVS 87 (87)
T ss_pred HHcCCccEEeC
Confidence 67999999974
No 319
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=1.6e-12 Score=130.72 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=94.4
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|..++|||||++++.+. .|. .+....+..+.. ..+..+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~------------------------~f~---------~~~~~t~~~~~~-~~~~~~~~ 47 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKD------------------------CYP---------ETYVPTVFENYT-ASFEIDEQ 47 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC------------------------cCC---------CCcCCceEEEEE-EEEEECCE
Confidence 68999999999999999999861 110 000011111111 122233
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCcCH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~~~ 481 (967)
...+.+|||||++.|.......++.+|++|+|+|.++.. .+......++..+.. ....++|+|.||+|+.+...
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~-----Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~ 122 (178)
T cd04131 48 RIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE-----TLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLS 122 (178)
T ss_pred EEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChh-----hHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChh
Confidence 346789999999998776666789999999999998721 111111122222222 22345899999999864211
Q ss_pred HH--H------HHHHHHHHHHHHHcCCccceEEeccccCCCc-cccc
Q psy3751 482 IF--Y------KRIVYAYKKFAEDIHFQNINTIPISALNGDN-IISA 519 (967)
Q Consensus 482 ~~--~------~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~g-i~~l 519 (967)
.. + .-..++.+++.++++. .+++.+||++|+| ++++
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~--~~~~E~SA~~~~~~v~~~ 167 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQLGA--EIYLECSAFTSEKSVRDI 167 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCC--CEEEECccCcCCcCHHHH
Confidence 00 0 0112345566666663 3789999999995 9885
No 320
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=1.3e-12 Score=135.67 Aligned_cols=158 Identities=17% Similarity=0.105 Sum_probs=97.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|..++|||||+.+++.. .|. .+....+..+.. ..+..+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~------------------------~F~---------~~y~pTi~~~~~-~~i~~~ 57 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKD------------------------CYP---------ETYVPTVFENYT-AGLETE 57 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcC------------------------CCC---------CCcCCceeeeeE-EEEEEC
Confidence 5689999999999999999999861 111 000011111110 112222
Q ss_pred --CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCc
Q psy3751 403 --KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~ 479 (967)
...+.||||+|.+.|.......++.||++|+|+|.++.. .+......++..+.. ..-.++|+|.||+|+.+.
T Consensus 58 ~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~-----Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 132 (232)
T cd04174 58 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE-----TVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD 132 (232)
T ss_pred CEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH-----HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 356789999999999877777889999999999998721 111101112222222 222358999999998642
Q ss_pred CHHH--------HHHHHHHHHHHHHHcCCccceEEeccccCCC-ccccccc
Q psy3751 480 NQIF--------YKRIVYAYKKFAEDIHFQNINTIPISALNGD-NIISASN 521 (967)
Q Consensus 480 ~~~~--------~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~-gi~~l~~ 521 (967)
.... ..-..++.+.+.++++. .+++.+||++|. |++++..
T Consensus 133 ~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~--~~~~EtSAktg~~~V~e~F~ 181 (232)
T cd04174 133 LSTLMELSNQKQAPISYEQGCALAKQLGA--EVYLECSAFTSEKSIHSIFR 181 (232)
T ss_pred cchhhhhccccCCcCCHHHHHHHHHHcCC--CEEEEccCCcCCcCHHHHHH
Confidence 1100 00112345667777775 258999999998 7998643
No 321
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.44 E-value=1.2e-12 Score=131.73 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=91.0
Q ss_pred EEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC--c
Q psy3751 327 FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK--R 404 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~ 404 (967)
|+++|..|+|||||++++++.. +.. +....+. +.....+..++ .
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~------------------------~~~---------~~~~~~~-~~~~~~~~~~~~~~ 46 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA------------------------FPE---------DYVPTVF-ENYSADVEVDGKPV 46 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC------------------------CCC---------CCCCcEE-eeeeEEEEECCEEE
Confidence 5899999999999999998611 100 0000000 00011122233 3
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCcCHHH
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINYNQIF 483 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~~~~~ 483 (967)
.+.++||||++.|.......+..+|++|+|+|.++.. .+.......+..... ..-.++|+|.||+|+..... .
T Consensus 47 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-----s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~ 120 (174)
T smart00174 47 ELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA-----SFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKS-T 120 (174)
T ss_pred EEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChh-h
Confidence 5789999999988776666778999999999998711 111111111222221 22345999999999875221 1
Q ss_pred HHH---------HHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 484 YKR---------IVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 484 ~~~---------i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... ..++...+.+..+. .+++++||++|.|++++
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~l 163 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIGA--VKYLECSALTQEGVREV 163 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcCC--cEEEEecCCCCCCHHHH
Confidence 111 12233455666654 37899999999999985
No 322
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.44 E-value=1.3e-12 Score=131.52 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=90.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeec-eeeeecC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVA-YRYFNTP- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~- 402 (967)
.||+++|+.++|||||+++|++.. +. .+... |+... ...+..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~------------------------~~---------~~~~~--t~~~~~~~~~~~~~ 46 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ------------------------FP---------EVYVP--TVFENYVADIEVDG 46 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC------------------------CC---------CCCCC--ccccceEEEEEECC
Confidence 579999999999999999998621 10 00000 11000 1122222
Q ss_pred -CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH-HHHHHHH-cCCCeEEEEEecCCccCc
Q psy3751 403 -KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKR-HSIIAHL-LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~-~~~~~~~-~~~~~iivviNK~D~~~~ 479 (967)
...+.++||||+++|.......+..+|++++|+|.++.. .+ ....+ .+..... ....++++|+||+|+.+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~-----s~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD-----SL-ENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 120 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhhCCCCCEEEEeeChhcccC
Confidence 346789999999988776656778999999999998611 01 11111 1111221 223349999999998753
Q ss_pred CHHHHHHH---------HHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRI---------VYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. ....+ ..+.+.+.+.++. .+++++||++|.|++++
T Consensus 121 ~~-~~~~i~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l 166 (175)
T cd01870 121 EH-TRRELAKMKQEPVKPEEGRDMANKIGA--FGYMECSAKTKEGVREV 166 (175)
T ss_pred hh-hhhhhhhccCCCccHHHHHHHHHHcCC--cEEEEeccccCcCHHHH
Confidence 21 11111 1223344444443 47899999999999984
No 323
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.42 E-value=7.8e-13 Score=114.28 Aligned_cols=81 Identities=28% Similarity=0.436 Sum_probs=75.4
Q ss_pred ceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCC
Q psy3751 549 LRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDIS 626 (967)
Q Consensus 549 ~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~ 626 (967)
|+|+|+++|+..+.| ++++|+|++|++++||++.+.|.+...+|++|+.++.++++|.|||.|++.+++ ..+++
T Consensus 1 lr~~i~~~~~~~~~g----~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQG----TVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred CEEEEEEEEEcCCcE----EEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 689999999988777 899999999999999999999999999999999999999999999999999986 35899
Q ss_pred CCccccc
Q psy3751 627 RGNMLVS 633 (967)
Q Consensus 627 ~G~vl~~ 633 (967)
+||+|+.
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 9999873
No 324
>KOG1489|consensus
Probab=99.42 E-value=6.5e-13 Score=136.11 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=95.9
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+-+.+..|++||.||||||||+|+|+...-.| .++.| +|+......+
T Consensus 192 ELKsiadvGLVG~PNAGKSTLL~als~AKpkV-------------------a~YaF--------------TTL~P~iG~v 238 (366)
T KOG1489|consen 192 ELKSIADVGLVGFPNAGKSTLLNALSRAKPKV-------------------AHYAF--------------TTLRPHIGTV 238 (366)
T ss_pred EeeeecccceecCCCCcHHHHHHHhhccCCcc-------------------cccce--------------eeecccccee
Confidence 44566779999999999999999999754433 12222 2443333344
Q ss_pred ecCCc-eEEEeeChh-----hHH--HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHH----HHHHHHHHcCCCeE
Q psy3751 400 NTPKR-KFIIADTPG-----HEQ--YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK----RHSIIAHLLRIKHI 467 (967)
Q Consensus 400 ~~~~~-~~~liDtpG-----~~~--~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~----~~~~~~~~~~~~~i 467 (967)
.+++. ++++-|.|| |.+ .-...++-+..|+..++|||.+.+.. .....|.. |.-..-+.+.-++.
T Consensus 239 ~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~---~~p~~~~~lL~~ELe~yek~L~~rp~ 315 (366)
T KOG1489|consen 239 NYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL---RNPWQQLQLLIEELELYEKGLADRPA 315 (366)
T ss_pred eccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc---CCHHHHHHHHHHHHHHHhhhhccCce
Confidence 55554 499999999 221 22233444577899999999987211 01111211 11112223445668
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
++|+||+|+.+..+. -++++.+.+.- ..++|+||++|+|+.++
T Consensus 316 liVaNKiD~~eae~~-------~l~~L~~~lq~--~~V~pvsA~~~egl~~l 358 (366)
T KOG1489|consen 316 LIVANKIDLPEAEKN-------LLSSLAKRLQN--PHVVPVSAKSGEGLEEL 358 (366)
T ss_pred EEEEeccCchhHHHH-------HHHHHHHHcCC--CcEEEeeeccccchHHH
Confidence 899999999743221 13444444442 36899999999998874
No 325
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.42 E-value=1.6e-12 Score=130.31 Aligned_cols=152 Identities=23% Similarity=0.218 Sum_probs=103.5
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+...+|+++|..|||||||+++|... .+. ...-|+......+.
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~------------------------~~~------------~~~pT~g~~~~~i~ 54 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNG------------------------EIS------------ETIPTIGFNIEEIK 54 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSS------------------------SEE------------EEEEESSEEEEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhc------------------------ccc------------ccCcccccccceee
Confidence 357789999999999999999999751 010 01123333445566
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCcc
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLI 477 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~ 477 (967)
..+..+.++|.+|+..+...+...+..+|++|+|||+++. ....+.++.+..+.. +.-.|+++++||+|+.
T Consensus 55 ~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~------~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 55 YKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDP------ERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp ETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGG------GGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred eCcEEEEEEeccccccccccceeeccccceeEEEEecccc------eeecccccchhhhcchhhcccceEEEEecccccc
Confidence 7888999999999988887777788899999999999972 123344444433221 2335699999999988
Q ss_pred CcCHHHHHHHHHHHHHHHHHcC-CccceEEeccccCCCcccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIH-FQNINTIPISALNGDNIIS 518 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~ii~iSa~~g~gi~~ 518 (967)
+.... +++.+.+. +..+. -..+.++++||.+|+|+.+
T Consensus 129 ~~~~~--~~i~~~l~--l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 129 DAMSE--EEIKEYLG--LEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp TSSTH--HHHHHHTT--GGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred Ccchh--hHHHhhhh--hhhcccCCceEEEeeeccCCcCHHH
Confidence 64321 22222111 22232 2367899999999999887
No 326
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.41 E-value=9.7e-13 Score=137.17 Aligned_cols=149 Identities=19% Similarity=0.173 Sum_probs=87.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeecee--eeecC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYR--YFNTP 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~~~ 402 (967)
+||+++|.+|+|||||+++|+... +. ..... .....+.... .+...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~------------------------~~----~~~~~----~t~~~~~~~~~i~~~~~ 48 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGE------------------------YD----DHAYD----ASGDDDTYERTVSVDGE 48 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC------------------------cC----ccCcC----CCccccceEEEEEECCE
Confidence 479999999999999999997511 10 00000 0000011111 12223
Q ss_pred CceEEEeeChhhHHHHHHHHhhcc-cCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc---CCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGAS-TADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL---RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~-~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~---~~~~iivviNK~D~~~ 478 (967)
...+.+|||||++.+.... .+. .+|++++|+|+++.. .+ ....+.+..+... .-.++|+|.||+|+.+
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~--~~~~~ad~iilV~d~td~~-----S~-~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 49 ESTLVVIDHWEQEMWTEDS--CMQYQGDAFVVVYSVTDRS-----SF-ERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred EEEEEEEeCCCcchHHHhH--HhhcCCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 4678899999998544332 234 899999999998821 01 1122222222221 1234999999999875
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
..+.. .++.+.+.+.++. +++++||++|.|++++.
T Consensus 121 ~~~v~----~~~~~~~a~~~~~---~~~e~SA~~~~gv~~l~ 155 (221)
T cd04148 121 SREVS----VQEGRACAVVFDC---KFIETSAGLQHNVDELL 155 (221)
T ss_pred cceec----HHHHHHHHHHcCC---eEEEecCCCCCCHHHHH
Confidence 33211 1122334444554 78999999999999853
No 327
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.41 E-value=2.7e-12 Score=132.72 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=93.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
+||+++|..++|||||+.+|+... | .++....+..+.. ..+..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~------------------------f---------~~~y~pTi~~~~~-~~~~~~~~ 47 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA------------------------Y---------PGSYVPTVFENYT-ASFEIDKR 47 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC------------------------C---------CCccCCccccceE-EEEEECCE
Confidence 689999999999999999998611 1 0010111110110 122333
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH-HHHHH--cCCCeEEEEEecCCccCc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS-IIAHL--LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~-~~~~~--~~~~~iivviNK~D~~~~ 479 (967)
...+.||||+|++.|.......+..+|++|+|+|.++.. .+ ......+ ..... -++ ++|+|.||+|+.+.
T Consensus 48 ~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~-----Sf-~~i~~~w~~~~~~~~~~~-piiLVgnK~DL~~~ 120 (222)
T cd04173 48 RIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE-----TL-DSVLKKWQGETQEFCPNA-KVVLVGCKLDMRTD 120 (222)
T ss_pred EEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhhCCCC-CEEEEEECcccccc
Confidence 346789999999999887777889999999999998821 01 1111111 11111 234 49999999998653
Q ss_pred CHHHHHH---------HHHHHHHHHHHcCCccceEEeccccCCCc-ccccc
Q psy3751 480 NQIFYKR---------IVYAYKKFAEDIHFQNINTIPISALNGDN-IISAS 520 (967)
Q Consensus 480 ~~~~~~~---------i~~~~~~~~~~~~~~~~~ii~iSa~~g~g-i~~l~ 520 (967)
... ... ..++-..+.++++. .+++.+||+++.| |.++.
T Consensus 121 ~~~-~~~~~~~~~~pIs~e~g~~~ak~~~~--~~y~E~SAk~~~~~V~~~F 168 (222)
T cd04173 121 LAT-LRELSKQRLIPVTHEQGTVLAKQVGA--VSYVECSSRSSERSVRDVF 168 (222)
T ss_pred hhh-hhhhhhccCCccCHHHHHHHHHHcCC--CEEEEcCCCcCCcCHHHHH
Confidence 110 111 12334555666653 3899999999995 98853
No 328
>KOG0086|consensus
Probab=99.41 E-value=9.4e-13 Score=119.06 Aligned_cols=150 Identities=23% Similarity=0.342 Sum_probs=106.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
-.+|+.++|+.|+|||.|+.+++.. +++....+.+.++++.+.+..+
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~---------------------------------kfkDdssHTiGveFgSrIinVG 54 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIEN---------------------------------KFKDDSSHTIGVEFGSRIVNVG 54 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHh---------------------------------hhcccccceeeeeecceeeeec
Confidence 4578999999999999999999861 1112222445566666656555
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHHHHHHcCCCe--EEEEEecCCcc
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSIIAHLLRIKH--IIIAVNKMDLI 477 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~~~~~~~~~~--iivviNK~D~~ 477 (967)
+ .++.||||+|+++|..-+....+.|-+++||.|++. ..| ......+.-++.+..+. +|++.||-|+-
T Consensus 55 gK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrdsf-------naLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 55 GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSF-------NALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred CcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhH-------HHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 4 467899999999999999999999999999999997 222 12223344444554433 56678999998
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+..+.+. ..|.++.. ..+..+||++|+|+++.
T Consensus 128 ~~R~VtflEA----s~FaqEne---l~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 128 PEREVTFLEA----SRFAQENE---LMFLETSALTGENVEEA 162 (214)
T ss_pred hhhhhhHHHH----Hhhhcccc---eeeeeecccccccHHHH
Confidence 7666544433 33443333 37789999999999984
No 329
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.41 E-value=2.4e-12 Score=131.31 Aligned_cols=141 Identities=21% Similarity=0.215 Sum_probs=89.3
Q ss_pred EecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec--CCceEE
Q psy3751 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT--PKRKFI 407 (967)
Q Consensus 330 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~~~ 407 (967)
+|..++|||||+++++.. .+ ..+....+.++.....+.. ....+.
T Consensus 1 vG~~~vGKTsLi~r~~~~------------------------~f---------~~~~~~Tig~~~~~~~~~~~~~~~~l~ 47 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG------------------------EF---------EKKYVATLGVEVHPLVFHTNRGPIRFN 47 (200)
T ss_pred CCCCCCCHHHHHHHHhcC------------------------CC---------CCCCCCceeEEEEEEEEEECCEEEEEE
Confidence 599999999999999851 11 1111111222222222333 345788
Q ss_pred EeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-HHHHHHHHHH--cCCCeEEEEEecCCccCcCHHHH
Q psy3751 408 IADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-TKRHSIIAHL--LRIKHIIIAVNKMDLINYNQIFY 484 (967)
Q Consensus 408 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t~~~~~~~~~--~~~~~iivviNK~D~~~~~~~~~ 484 (967)
||||||+++|.......++.+|++|+|+|+++ ...-+ ....+..+.. -++ ++|+|.||+|+.... ...
T Consensus 48 iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~-------~~S~~~i~~w~~~i~~~~~~~-piilvgNK~Dl~~~~-v~~ 118 (200)
T smart00176 48 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA-------RVTYKNVPNWHRDLVRVCENI-PIVLCGNKVDVKDRK-VKA 118 (200)
T ss_pred EEECCCchhhhhhhHHHhcCCCEEEEEEECCC-------hHHHHHHHHHHHHHHHhCCCC-CEEEEEECccccccc-CCH
Confidence 99999999998887788899999999999998 22111 1222222222 234 499999999985421 111
Q ss_pred HHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 485 KRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 485 ~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+ . ..+.+..+ ++++++||++|.||.++.
T Consensus 119 ~----~-~~~~~~~~---~~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 119 K----S-ITFHRKKN---LQYYDISAKSNYNFEKPF 146 (200)
T ss_pred H----H-HHHHHHcC---CEEEEEeCCCCCCHHHHH
Confidence 1 1 12334444 489999999999999863
No 330
>PRK08349 hypothetical protein; Validated
Probab=99.40 E-value=3e-12 Score=130.74 Aligned_cols=149 Identities=15% Similarity=0.084 Sum_probs=100.3
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCC-ChhhHHHHHHHHHHhCCcE---EEEecch----hhhhcc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHN-FPEVISFRDNCISKLGETL---IVRSVED----SIMKGT 110 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~-~pet~~~~~~~~~~~gi~i---~~~~~~~----~~~~~~ 110 (967)
+.++++|||+||+|+++++.+. +.++.++|+|++.. .....+.++++.+.+|+++ .++.... .+....
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~----g~~v~av~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 77 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRR----GVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLR 77 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHc----CCeEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHH
Confidence 5789999999999999999875 66899999998521 1123344455555556875 3332211 111000
Q ss_pred -cccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCC
Q psy3751 111 -VRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGE 189 (967)
Q Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 189 (967)
.......|..|..+......+.+.+.|.+.+++||+.+|......+++...... ..
T Consensus 78 ~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl~~~~~~-----------------------~~ 134 (198)
T PRK08349 78 ELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLDNLMVISTA-----------------------TD 134 (198)
T ss_pred hhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHHhccccc-----------------------cC
Confidence 011233455566666667888888899999999999999876655554442211 12
Q ss_pred ceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 190 NIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 190 ~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
...++||++++++||..|.+..|++
T Consensus 135 i~i~rPL~~~~K~eI~~~a~~~g~~ 159 (198)
T PRK08349 135 LPVLRPLIGLDKEEIVKIAKEIGTF 159 (198)
T ss_pred CeEEcCCCCCCHHHHHHHHHHcCCh
Confidence 3578999999999999999999954
No 331
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.40 E-value=2.8e-12 Score=141.93 Aligned_cols=163 Identities=17% Similarity=0.141 Sum_probs=112.8
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCC--------ChhhHHHHHHHHHHhCCcEEEEecchhhhhcc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHN--------FPEVISFRDNCISKLGETLIVRSVEDSIMKGT 110 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~--------~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~ 110 (967)
+++|++|||+||+++++++.+. +.++.++|++++.. .++..++++++|+++|++++++.....++...
T Consensus 1 kVlValSGGvDSsvla~lL~~~----g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v 76 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ----GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKV 76 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHH
Confidence 4789999999999999999886 56789999998742 24567899999999999999998765443211
Q ss_pred ---------cccCCCCcccchh-hcHHHHHHHHHHcCCcEEEEeccchhhHhh-hccccccccccCCCCCCCCCCccccc
Q psy3751 111 ---------VRLRKPNTDSRNA-AQSITLLETIKEFKFDACIGGARRDEEKAR-AKERIFSFRDKFGQWNPKSQRPELWN 179 (967)
Q Consensus 111 ---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~R~des~~R-~~~~~~~~~~~~~~~~~~~~~p~~~~ 179 (967)
....+.+|..|.. +|...+.+.+++.|.+.++|||.+++.... ....+++....... +. +.
T Consensus 77 ~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kd-----qs---y~ 148 (349)
T cd01998 77 FEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKD-----QS---YF 148 (349)
T ss_pred HHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCC-----cc---eE
Confidence 1122345666666 466778888999999999999998875433 22223332221100 00 00
Q ss_pred cccccCC-CCCceEEeeCCCCcHHHHHHHHHHcCCCC
Q psy3751 180 LYNTRVH-PGENIRVFPISNWTELDIWQYIEREKIIL 215 (967)
Q Consensus 180 ~~~~~~~-~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~ 215 (967)
++ ... ......++||.+++++||.+|++++|+|.
T Consensus 149 L~--~~~~~~l~~ii~PL~~~~K~eVr~~A~~~gl~~ 183 (349)
T cd01998 149 LS--QLSQEQLSRLIFPLGDLTKPEVREIAKELGLPV 183 (349)
T ss_pred ec--cCCHHHHhheeecCCCCCHHHHHHHHHHcCCCC
Confidence 00 000 01124689999999999999999999984
No 332
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.40 E-value=2.7e-12 Score=141.58 Aligned_cols=162 Identities=17% Similarity=0.115 Sum_probs=108.8
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCC----------CChhhHHHHHHHHHHhCCcEEEEecchhhhh
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGH----------NFPEVISFRDNCISKLGETLIVRSVEDSIMK 108 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~----------~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~ 108 (967)
+++|++|||+||+++++++.+. +.++.++|+++.. ..++..+.++++|+.+|+|++++.....++.
T Consensus 2 kVlValSGGvDSsv~a~lL~~~----G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~ 77 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQ----GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWN 77 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHc----CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHH
Confidence 6789999999999999999986 5679999995421 1245678899999999999999887665533
Q ss_pred cc---------cccCCCCcccchhh-cHHHHHHHHHHc-CCcEEEEeccc---hhhHhhhccccccccccCCCCCCCCCC
Q psy3751 109 GT---------VRLRKPNTDSRNAA-QSITLLETIKEF-KFDACIGGARR---DEEKARAKERIFSFRDKFGQWNPKSQR 174 (967)
Q Consensus 109 ~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~G~R~---des~~R~~~~~~~~~~~~~~~~~~~~~ 174 (967)
.. ....+++|..|... |...+.+.+++. |++.++|||++ ++...+..++....+.+ ..+
T Consensus 78 ~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~kD-qsy------ 150 (352)
T TIGR00420 78 KVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNKD-QSY------ 150 (352)
T ss_pred HHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCcC-cce------
Confidence 21 11223456666553 346778888885 99999999988 33322222222221111 000
Q ss_pred ccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCC
Q psy3751 175 PELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILP 216 (967)
Q Consensus 175 p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~ 216 (967)
.++.. ........++||.+|+++||.+|++++|+|+.
T Consensus 151 ----~L~~l-~~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~ 187 (352)
T TIGR00420 151 ----FLYHL-SHEQLAKLLFPLGELLKPEVRQIAKNAGLPTA 187 (352)
T ss_pred ----ecccC-CHHHhhhhcccCCCCCHHHHHHHHHHcCCCCC
Confidence 00000 00012346899999999999999999999764
No 333
>KOG0073|consensus
Probab=99.39 E-value=2.3e-12 Score=119.03 Aligned_cols=149 Identities=17% Similarity=0.210 Sum_probs=101.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|.++|..||||||++++|++..- .... -|........+.+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~--------------------------------~~i~----pt~gf~Iktl~~~ 58 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT--------------------------------DTIS----PTLGFQIKTLEYK 58 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc--------------------------------cccC----CccceeeEEEEec
Confidence 468899999999999999999987220 0000 1222333457778
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH----HHcCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA----HLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~----~~~~~~~iivviNK~D~~~ 478 (967)
++.++++|..|+..+..-+...+..+|+.|+|||+++. -.+.+++.++.-+ +..|. +++|+.||.|+..
T Consensus 59 ~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~------~r~~e~~~~L~~lL~eerlaG~-~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 59 GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDR------MRMQECKQELTELLVEERLAGA-PLLVLANKQDLPG 131 (185)
T ss_pred ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchH------HHHHHHHHHHHHHHhhhhhcCC-ceEEEEecCcCcc
Confidence 89999999999999998899999999999999999872 1223333333222 22454 4899999999985
Q ss_pred cC-HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 479 YN-QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 479 ~~-~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.- .+... ..-.+..+++... ++++-+||.+|+++.+
T Consensus 132 ~l~~~~i~-~~~~L~~l~ks~~---~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 132 ALSLEEIS-KALDLEELAKSHH---WRLVKCSAVTGEDLLE 168 (185)
T ss_pred ccCHHHHH-HhhCHHHhccccC---ceEEEEeccccccHHH
Confidence 32 21111 1133445554444 5899999999988654
No 334
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=3.1e-12 Score=132.70 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=100.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.+.|+++|+||+|||||++.|++..-.+ +.+- -.|-.+...+|+.+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEv------------------------A~YP---------FTTK~i~vGhfe~~ 213 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEV------------------------APYP---------FTTKGIHVGHFERG 213 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCcc------------------------CCCC---------ccccceeEeeeecC
Confidence 56789999999999999999999743322 1111 12333344568888
Q ss_pred CceEEEeeChhhH--------HHHHHHHhhc-ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 403 KRKFIIADTPGHE--------QYTRNMITGA-STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 403 ~~~~~liDtpG~~--------~~~~~~~~~~-~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
..++++|||||.- ..-++.+.++ ...++++|++|+++ .+++++..|..-.-.+-..+. +++++|+||
T Consensus 214 ~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se---~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK 289 (346)
T COG1084 214 YLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSE---TCGYSLEEQISLLEEIKELFK-APIVVVINK 289 (346)
T ss_pred CceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc---ccCCCHHHHHHHHHHHHHhcC-CCeEEEEec
Confidence 8899999999922 2334455555 45789999999998 344455566544444445556 569999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|..+ .+..+++... +...+.. ....+|+..+.+++..
T Consensus 290 ~D~~~--~e~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 290 IDIAD--EEKLEEIEAS----VLEEGGE--EPLKISATKGCGLDKL 327 (346)
T ss_pred ccccc--hhHHHHHHHH----HHhhccc--cccceeeeehhhHHHH
Confidence 99984 3333443322 3333332 2467788888888764
No 335
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.39 E-value=2.5e-12 Score=119.65 Aligned_cols=107 Identities=32% Similarity=0.411 Sum_probs=74.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
+|+++|.+|+|||||+|+|++.... ......+.|.+..+..+..++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~--------------------------------~~~~~~~~T~~~~~~~~~~~~~~ 48 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA--------------------------------KVSNIPGTTRDPVYGQFEYNNKK 48 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS--------------------------------EESSSTTSSSSEEEEEEEETTEE
T ss_pred CEEEECCCCCCHHHHHHHHhccccc--------------------------------cccccccceeeeeeeeeeeceee
Confidence 5899999999999999999962110 01111344555544556678888
Q ss_pred EEEeeChhhH---------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 406 FIIADTPGHE---------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 406 ~~liDtpG~~---------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
+.|+||||.. .........+..+|++++|+|+.+ ....+..+.+..++ .-+++++|+||
T Consensus 49 ~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~-------~~~~~~~~~~~~l~--~~~~~i~v~NK 116 (116)
T PF01926_consen 49 FILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN-------PITEDDKNILRELK--NKKPIILVLNK 116 (116)
T ss_dssp EEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS-------HSHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred EEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC-------CCCHHHHHHHHHHh--cCCCEEEEEcC
Confidence 9999999931 244456667789999999999776 33344444444443 44569999998
No 336
>KOG0080|consensus
Probab=99.38 E-value=2.5e-12 Score=117.68 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=107.6
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...+||.+||..|+|||||+-+++. +.+..+....|.+|+....+..
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~---------------------------------~~fd~~~~~tIGvDFkvk~m~v 55 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVS---------------------------------NTFDDLHPTTIGVDFKVKVMQV 55 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHh---------------------------------cccCccCCceeeeeEEEEEEEE
Confidence 3568999999999999999999875 2223333344555665555555
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH-HHHHHc----CCCeEEEEEecC
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS-IIAHLL----RIKHIIIAVNKM 474 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~-~~~~~~----~~~~iivviNK~ 474 (967)
++ .++.||||+|+++|..-+.+.++.|.++|+|.|.+... .+. ..+++ .-+... .+- .++|.||+
T Consensus 56 dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rd-----tf~--kLd~W~~Eld~Ystn~dii-kmlVgNKi 127 (209)
T KOG0080|consen 56 DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRD-----TFV--KLDIWLKELDLYSTNPDII-KMLVGNKI 127 (209)
T ss_pred cCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchh-----hHH--hHHHHHHHHHhhcCCccHh-Hhhhcccc
Confidence 54 57889999999999999999999999999999998711 111 11222 111111 222 35689999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESL 538 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~ 538 (967)
|..+.... -.++=..|.++.+. -|+..||++.+|+... +.++.+.+
T Consensus 128 Dkes~R~V----~reEG~kfAr~h~~---LFiE~SAkt~~~V~~~-----------FeelveKI 173 (209)
T KOG0080|consen 128 DKESERVV----DREEGLKFARKHRC---LFIECSAKTRENVQCC-----------FEELVEKI 173 (209)
T ss_pred cchhcccc----cHHHHHHHHHhhCc---EEEEcchhhhccHHHH-----------HHHHHHHH
Confidence 97643221 22333456666665 7999999999999874 55666665
No 337
>KOG1191|consensus
Probab=99.38 E-value=6.5e-13 Score=143.97 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=105.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+|+|.||+|||||+|+|+.+...| ...+.|.|.|.--..++.+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsI--------------------------------VSpv~GTTRDaiea~v~~~ 314 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSI--------------------------------VSPVPGTTRDAIEAQVTVN 314 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceE--------------------------------eCCCCCcchhhheeEeecC
Confidence 44889999999999999999999855444 1233577777777889999
Q ss_pred CceEEEeeChhhHH---------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC-----C----
Q psy3751 403 KRKFIIADTPGHEQ---------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR-----I---- 464 (967)
Q Consensus 403 ~~~~~liDtpG~~~---------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~-----~---- 464 (967)
+.++.|+||+|..+ -+......+.+||++++||||.+ +...+.......+...+ .
T Consensus 315 G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~-------~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 315 GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEE-------SDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccc-------cccccchHHHHHHHHhccceEEEeccc
Confidence 99999999999554 33445566789999999999987 33333333333333322 1
Q ss_pred --CeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceE-EeccccCCCccccccc
Q psy3751 465 --KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINT-IPISALNGDNIISASN 521 (967)
Q Consensus 465 --~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i-i~iSa~~g~gi~~l~~ 521 (967)
.++|++.||+|+...-.+ +......+....+....++ ..+|+++++|+..|..
T Consensus 388 ~~~~~i~~~nk~D~~s~~~~----~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~ 443 (531)
T KOG1191|consen 388 EKQRIILVANKSDLVSKIPE----MTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLST 443 (531)
T ss_pred cccceEEEechhhccCcccc----ccCCceeccccccCcccceEEEeeechhhhHHHHHH
Confidence 568899999998753111 1111111222223223344 4599999999998654
No 338
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.38 E-value=4.5e-12 Score=125.80 Aligned_cols=148 Identities=24% Similarity=0.271 Sum_probs=97.1
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC--
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK-- 403 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-- 403 (967)
||+++|..++|||||+++|.+.. +. .+....+..+.....+..++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~------------------------~~---------~~~~~t~~~~~~~~~~~~~~~~ 47 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE------------------------FP---------ENYIPTIGIDSYSKEVSIDGKP 47 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS------------------------TT---------SSSETTSSEEEEEEEEEETTEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc------------------------cc---------cccccccccccccccccccccc
Confidence 69999999999999999998621 10 00111111233333333333
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cC-CCeEEEEEecCCccCcCH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LR-IKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~-~~~iivviNK~D~~~~~~ 481 (967)
..+.++|++|+++|.......++.+|++|+|+|.++.. -.......+..... .. ..+++||.||.|+.+..+
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~------S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~ 121 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEE------SFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDERE 121 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHH------HHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSS
T ss_pred cccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccceeeecccccccccc
Confidence 45789999999988776666778999999999998711 11122222222222 23 356999999999886332
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. .++.+.+.++++. +++.+||+++.|+.++
T Consensus 122 v~----~~~~~~~~~~~~~---~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 122 VS----VEEAQEFAKELGV---PYFEVSAKNGENVKEI 152 (162)
T ss_dssp SC----HHHHHHHHHHTTS---EEEEEBTTTTTTHHHH
T ss_pred ch----hhHHHHHHHHhCC---EEEEEECCCCCCHHHH
Confidence 21 2334556677764 8999999999999985
No 339
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.38 E-value=3.2e-12 Score=133.86 Aligned_cols=81 Identities=27% Similarity=0.332 Sum_probs=58.5
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
+|+++|.+|+|||||+++|++....+ . ...+.|.+.....+.+++..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-------------------~--------------~~~~tT~~~~~g~~~~~~~~ 48 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV-------------------A--------------AYEFTTLTCVPGVLEYKGAK 48 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-------------------c--------------CCCCccccceEEEEEECCeE
Confidence 68999999999999999999732110 0 01133444434445667889
Q ss_pred EEEeeChhhHH-------HHHHHHhhcccCCEEEEEEeCCC
Q psy3751 406 FIIADTPGHEQ-------YTRNMITGASTADAVIILIDASK 439 (967)
Q Consensus 406 ~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 439 (967)
+.++||||+.+ +...++..++.+|++++|+|+++
T Consensus 49 i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 49 IQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred EEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCc
Confidence 99999999632 34556778899999999999876
No 340
>PRK14561 hypothetical protein; Provisional
Probab=99.37 E-value=5.4e-12 Score=127.62 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=103.5
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcc---cccCC
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGT---VRLRK 115 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~---~~~~~ 115 (967)
+++|+||||+||+++++++.+. .++.+++++.|.. ...++++++|+++|++++++.....++... .....
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~~g~~--~e~~~a~~~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~ 74 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVNFGVL--DSWKHAREAAKALGFPHRVLELDREILEKAVDMIIEDG 74 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEecCch--hHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 4789999999999999988765 2578899999863 347899999999999999997766443221 11122
Q ss_pred CCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEee
Q psy3751 116 PNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFP 195 (967)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~P 195 (967)
.++..|..++...+...+ +|++.+++|||.||......++.+..-.. ..+...++|
T Consensus 75 ~P~~~~~~l~~~~l~~~a--~g~~~Ia~G~n~DD~~et~~r~~~~a~~~----------------------~~gi~iirP 130 (194)
T PRK14561 75 YPNNAIQYVHEHALEALA--EEYDVIADGTRRDDRVPKLSRSEIQSLED----------------------RKGVQYIRP 130 (194)
T ss_pred CCCchhHHHHHHHHHHHH--cCCCEEEEEecCCCcchhccHHHHhhhhc----------------------CCCcEEEee
Confidence 345566666666666655 69999999999999776555554431111 112346899
Q ss_pred CCCCcHHHHHHHHHHc
Q psy3751 196 ISNWTELDIWQYIERE 211 (967)
Q Consensus 196 l~~wt~~dV~~yi~~~ 211 (967)
|+.|+++||..|.+..
T Consensus 131 L~~~~K~eI~~la~~l 146 (194)
T PRK14561 131 LLGFGRKTIDRLVERL 146 (194)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999865
No 341
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.36 E-value=6.2e-12 Score=125.47 Aligned_cols=142 Identities=19% Similarity=0.167 Sum_probs=97.7
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcccccCCCCc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNT 118 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~ 118 (967)
+++++|||||||+++++++.+. +.++.++|+|.|.......++++++++.+| +...+.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~----------------- 58 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVP----------------- 58 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEe-----------------
Confidence 4789999999999999999886 557899999998764445589999999999 222111
Q ss_pred ccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccc---cCCCCCceEEee
Q psy3751 119 DSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNT---RVHPGENIRVFP 195 (967)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~i~P 195 (967)
.+.......+.+.+.++|.+.+++|++.+|....... +|.++..++. .....+...++|
T Consensus 59 -~~~~~~~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~v~~P 120 (169)
T cd01995 59 -ARNLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDC-----------------RPEFIEAMNKALNLGTENGIKIHAP 120 (169)
T ss_pred -CcCHHHHHHHHHHHHHCCCCEEEEeeccCccCCCCCC-----------------CHHHHHHHHHHHHhhcCCCeEEEeC
Confidence 0111222446677788999999999999885311000 0000000000 001122346899
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCccc
Q psy3751 196 ISNWTELDIWQYIEREKIILPSLYF 220 (967)
Q Consensus 196 l~~wt~~dV~~yi~~~~lp~~~lY~ 220 (967)
|++|++.||..|++++|+|+..-|.
T Consensus 121 L~~~~K~ei~~~~~~~g~~~~~s~s 145 (169)
T cd01995 121 LIDLSKAEIVRLGGELGVPLELTWS 145 (169)
T ss_pred cccCCHHHHHHHHhHcCCChhheee
Confidence 9999999999999999999999883
No 342
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.35 E-value=6.8e-12 Score=122.34 Aligned_cols=143 Identities=24% Similarity=0.232 Sum_probs=89.8
Q ss_pred EEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhcccee-Eeeceeeeec--CCce
Q psy3751 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGIT-IDVAYRYFNT--PKRK 405 (967)
Q Consensus 329 ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~~--~~~~ 405 (967)
++|++|+|||||+++|++..... .....| .+.....+.. .+..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~----------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 46 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP----------------------------------EEYETTIIDFYSKTIEVDGKKVK 46 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC----------------------------------cccccchhheeeEEEEECCEEEE
Confidence 57999999999999998732210 000111 1111112221 2567
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH-----HHHHHcCCCeEEEEEecCCccCcC
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS-----IIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~-----~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
+.++|+||+..+.......+..+|++++|+|++. ....+....+ ......+ .++++|+||+|+....
T Consensus 47 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 47 LQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD-------RESFENVKEWLLLILINKEGEN-IPIILVGNKIDLPEER 118 (157)
T ss_pred EEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhhccCC-CcEEEEEecccccccc
Confidence 8999999999888877778899999999999998 3333322221 1122233 4599999999998643
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
...... ........ ...+++++|+.+|.|+.++
T Consensus 119 ~~~~~~---~~~~~~~~---~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 119 VVSEEE---LAEQLAKE---LGVPYFETSAKTGENVEEL 151 (157)
T ss_pred chHHHH---HHHHHHhh---cCCcEEEEecCCCCChHHH
Confidence 321111 01111111 2458999999999998873
No 343
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.33 E-value=6.6e-12 Score=138.12 Aligned_cols=166 Identities=16% Similarity=0.081 Sum_probs=110.4
Q ss_pred HHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCC--ChhhHHHHHHHHHHhCCcEEEEecchhhhhccc
Q psy3751 34 SAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHN--FPEVISFRDNCISKLGETLIVRSVEDSIMKGTV 111 (967)
Q Consensus 34 ~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~--~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~ 111 (967)
+...++++|++|||+||+|+++++.+. +.++.++|++.+.. .++..+.++++|+++|++++++.....++....
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~----G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f~~~v~ 77 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEA----GYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVFRKQII 77 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHc----CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHHHHHHH
Confidence 345678999999999999999999986 66899999987532 345678899999999999999887765544321
Q ss_pred ---------ccCCCCcccchh-hcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccC--CCCCCCCCCccccc
Q psy3751 112 ---------RLRKPNTDSRNA-AQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKF--GQWNPKSQRPELWN 179 (967)
Q Consensus 112 ---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~--~~~~~~~~~p~~~~ 179 (967)
...+.+|..|.. +|...+.+.+++.|.+.++|||.+..........+....+.. ..+- +|.
T Consensus 78 ~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyf-------L~~ 150 (360)
T PRK14665 78 DYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFF-------LWG 150 (360)
T ss_pred hhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceEE-------ecC
Confidence 112234445555 445668888999999999999996432111111122211110 0000 000
Q ss_pred cccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 180 LYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 180 ~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
.. .......++||.+++++||.+++++.|++
T Consensus 151 l~----~~~l~~~ifPLg~~~K~eVr~~A~~~gl~ 181 (360)
T PRK14665 151 LR----QEILQRMLLPMGGMTKSEARAYAAERGFE 181 (360)
T ss_pred CC----HHHHhheeccCcCCCHHHHHHHHHHCCCC
Confidence 00 00011348999999999999999999974
No 344
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.33 E-value=2.1e-11 Score=124.85 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=91.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-C
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-K 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~ 403 (967)
++|+++|.+|+|||||+|+|++..... .+ . . ..+. ...|.+.. .+... .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~--------------~~---~-~----~~~~------~~~t~~~~--~~~~~~~ 51 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE--------------EG---A-A----PTGV------VETTMKRT--PYPHPKF 51 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC--------------CC---c-c----ccCc------cccccCce--eeecCCC
Confidence 689999999999999999998721100 00 0 0 0000 00111111 11111 3
Q ss_pred ceEEEeeChhh-------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 404 RKFIIADTPGH-------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 404 ~~~~liDtpG~-------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
..+.++||||. +.|...+ .+..+|++++|.|. .+.......+..+...+.+ +++|+||+|+
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~--~~~~~d~~l~v~~~---------~~~~~d~~~~~~l~~~~~~-~ilV~nK~D~ 119 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEM--KFSEYDFFIIISST---------RFSSNDVKLAKAIQCMGKK-FYFVRTKVDR 119 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHh--CccCcCEEEEEeCC---------CCCHHHHHHHHHHHHhCCC-EEEEEecccc
Confidence 46899999995 3454432 35778998887542 3334445555666666655 8999999998
Q ss_pred cCcCH-----------HHHHHHHHHHHHHHHHcCCccceEEecccc--CCCcccc
Q psy3751 477 INYNQ-----------IFYKRIVYAYKKFAEDIHFQNINTIPISAL--NGDNIIS 518 (967)
Q Consensus 477 ~~~~~-----------~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~--~g~gi~~ 518 (967)
....+ ...+++.+.+...++..+....+++.+|+. .+.|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~ 174 (197)
T cd04104 120 DLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPK 174 (197)
T ss_pred hhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHH
Confidence 54222 234455555555555555666789999998 4566665
No 345
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.31 E-value=2.4e-11 Score=124.54 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=95.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
++|+++|.+|+|||||+|+|++..... ......|.|.+.......+.++
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~-------------------------------~~~~~~~~T~~~~~~~~~~~~~ 49 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFE-------------------------------SKLSASSVTKTCQKESAVWDGR 49 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccc-------------------------------cccCCCCcccccceeeEEECCe
Confidence 479999999999999999999832211 0001235666666666777889
Q ss_pred eEEEeeChhhHH-------HHHHHHh----hcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cC---CCeEEE
Q psy3751 405 KFIIADTPGHEQ-------YTRNMIT----GASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LR---IKHIII 469 (967)
Q Consensus 405 ~~~liDtpG~~~-------~~~~~~~----~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~---~~~iiv 469 (967)
++++|||||..+ ....+.. ....+|++|+|+|+.. +.....+.+..+.. +| .+++|+
T Consensus 50 ~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~--------~t~~d~~~l~~l~~~fg~~~~~~~iv 121 (196)
T cd01852 50 RVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR--------FTEEEEQAVETLQELFGEKVLDHTIV 121 (196)
T ss_pred EEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC--------cCHHHHHHHHHHHHHhChHhHhcEEE
Confidence 999999999432 2222222 3456899999999875 22334444443333 34 256899
Q ss_pred EEecCCccCcC--HHHHHHHHHHHHHHHHHcCCccceEEec-----cccCCCcccc
Q psy3751 470 AVNKMDLINYN--QIFYKRIVYAYKKFAEDIHFQNINTIPI-----SALNGDNIIS 518 (967)
Q Consensus 470 viNK~D~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ii~i-----Sa~~g~gi~~ 518 (967)
++||.|..... ++........++.+++.++- .++.. |+..+.++.+
T Consensus 122 v~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~---r~~~f~~~~~~~~~~~q~~~ 174 (196)
T cd01852 122 LFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG---RYVAFNNKAKGEEQEQQVKE 174 (196)
T ss_pred EEECccccCCCcHHHHHHhccHHHHHHHHHhCC---eEEEEeCCCCcchhHHHHHH
Confidence 99999977532 12222233567777777664 22233 3455666665
No 346
>KOG0087|consensus
Probab=99.31 E-value=1.4e-11 Score=119.43 Aligned_cols=154 Identities=25% Similarity=0.297 Sum_probs=105.6
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...+||+++|.+++|||-|+.+++. +.+..+....|.+++....+..
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftr---------------------------------nEF~~~SksTIGvef~t~t~~v 58 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTR---------------------------------NEFSLESKSTIGVEFATRTVNV 58 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcc---------------------------------cccCcccccceeEEEEeeceee
Confidence 4678999999999999999999985 2223344445556666666666
Q ss_pred CCc--eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC
Q psy3751 402 PKR--KFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~--~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~ 478 (967)
+++ +..||||+|+++|..-+....+.|-+++||.|.+. ..|+.-..|..+.++|.. -++. +++|.||+||..
T Consensus 59 d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad----~niv-imLvGNK~DL~~ 133 (222)
T KOG0087|consen 59 DGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD----SNIV-IMLVGNKSDLNH 133 (222)
T ss_pred cCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC----CCeE-EEEeecchhhhh
Confidence 665 45799999999999878888899999999999987 112211112222222211 2344 888999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
-... -.++-+.+.+..+. .|+.+||+.+.|+++..
T Consensus 134 lraV----~te~~k~~Ae~~~l---~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 134 LRAV----PTEDGKAFAEKEGL---FFLETSALDATNVEKAF 168 (222)
T ss_pred cccc----chhhhHhHHHhcCc---eEEEecccccccHHHHH
Confidence 2221 12233445555555 89999999999999853
No 347
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.30 E-value=2.7e-11 Score=128.43 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCC-ChhhHHHHHHHHHHhCCcEEE
Q psy3751 23 ESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHN-FPEVISFRDNCISKLGETLIV 99 (967)
Q Consensus 23 ~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~-~pet~~~~~~~~~~~gi~i~~ 99 (967)
+++..+.|++.++.. ++++|++|||+||+++++++.++.. .++.+++++.+.. .++..+.++++|+.+|+++++
T Consensus 6 ~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~~~~~---~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~ 82 (250)
T TIGR00552 6 VEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALG---EQNHALLLPHSVQTPEQDVQDALALAEPLGINYKN 82 (250)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHHHhhC---CceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEE
Confidence 344555666655543 7899999999999999999988753 2677888887743 456889999999999999999
Q ss_pred Eecchhhhhc-----ccccCC---CCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCC
Q psy3751 100 RSVEDSIMKG-----TVRLRK---PNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPK 171 (967)
Q Consensus 100 ~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~ 171 (967)
+.....+... ...... ..|..|.++|...+...+.++|..++.|||+.+..... + ..++
T Consensus 83 i~i~~~~~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~G~-----~---t~~g----- 149 (250)
T TIGR00552 83 IDIAPIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELMLGY-----F---TKYG----- 149 (250)
T ss_pred EcchHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhhCC-----e---eccc-----
Confidence 8776544411 000111 12456777888889999999999999999996532110 0 0000
Q ss_pred CCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCC
Q psy3751 172 SQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILP 216 (967)
Q Consensus 172 ~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~ 216 (967)
.....++||.+.++.||+.|++.+|+|..
T Consensus 150 ----------------d~~~~i~PL~~l~K~eV~~lA~~~g~p~~ 178 (250)
T TIGR00552 150 ----------------DGGCDIAPIGDLFKTQVYELAKRLNVPER 178 (250)
T ss_pred ----------------CCccCccccCCCcHHHHHHHHHHHCccHH
Confidence 01246899999999999999999999743
No 348
>KOG0093|consensus
Probab=99.30 E-value=7.2e-12 Score=112.89 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=103.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee-ec
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF-NT 401 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-~~ 401 (967)
-..|+.++|+..+|||||+-+.+. .+|..+++ +.+.++.....+ +.
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~d------------------------dSFt~afv---------sTvGidFKvKTvyr~ 66 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYAD------------------------DSFTSAFV---------STVGIDFKVKTVYRS 66 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhc------------------------ccccccee---------eeeeeeEEEeEeeec
Confidence 346899999999999999998876 33332222 222333333222 22
Q ss_pred CC-ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC-CCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 402 PK-RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK-FNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 402 ~~-~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~-~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
+. .++.+|||.|++.|..-+-..+++|++.||+.|.++.+ |. ........+....-.+.+ +|+|.||||+-++
T Consensus 67 ~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~----svqdw~tqIktysw~naq-vilvgnKCDmd~e 141 (193)
T KOG0093|consen 67 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN----SVQDWITQIKTYSWDNAQ-VILVGNKCDMDSE 141 (193)
T ss_pred ccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHH----HHHHHHHHheeeeccCce-EEEEecccCCccc
Confidence 22 46789999999999988888899999999999999821 21 111111122222234444 9999999999764
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
.-. ..+..+.+..++|+ .++..||+.+.|+..+.
T Consensus 142 Rvi----s~e~g~~l~~~LGf---efFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 142 RVI----SHERGRQLADQLGF---EFFETSAKENINVKQVF 175 (193)
T ss_pred eee----eHHHHHHHHHHhCh---HHhhhcccccccHHHHH
Confidence 322 12335667888898 78999999999999853
No 349
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.29 E-value=9.1e-12 Score=122.68 Aligned_cols=145 Identities=17% Similarity=0.095 Sum_probs=84.4
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
+||+++|..|+|||||+.+++.. .|.- ...+. .+. ....+..++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~------------------------~f~~----~~~~~---~~~----~~~~i~~~~~ 45 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTG------------------------SYVQ----LESPE---GGR----FKKEVLVDGQ 45 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhC------------------------CCCC----CCCCC---ccc----eEEEEEECCE
Confidence 47999999999999999998751 1100 00000 000 011233333
Q ss_pred -ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc---CCCeEEEEEecCCccCc
Q psy3751 404 -RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL---RIKHIIIAVNKMDLINY 479 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~---~~~~iivviNK~D~~~~ 479 (967)
..+.++||+|.+.. ...+.+|++++|+|.++.. .+. .....+..+... .-.++++|.||+|+...
T Consensus 46 ~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~-----sf~-~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 114 (158)
T cd04103 46 SHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEA-----SFQ-TVYNLYHQLSSYRNISEIPLILVGTQDAISES 114 (158)
T ss_pred EEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHH-----HHH-HHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence 45789999998752 2346799999999999821 111 112222222222 22349999999998532
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
++... ..++.+++.++.+ +++++++||++|.||+++
T Consensus 115 ~~~~v--~~~~~~~~~~~~~--~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 115 NPRVI--DDARARQLCADMK--RCSYYETCATYGLNVERV 150 (158)
T ss_pred CCccc--CHHHHHHHHHHhC--CCcEEEEecCCCCCHHHH
Confidence 11111 1122334444432 248999999999999985
No 350
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.29 E-value=7.4e-12 Score=137.17 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=112.6
Q ss_pred HcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcc----
Q psy3751 35 AECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGT---- 110 (967)
Q Consensus 35 ~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~---- 110 (967)
...++++|++|||+||+++++++.+. +.++.++|++.. .+..+.++++|+.+|++++++.....++...
T Consensus 3 ~~~~kVlVa~SGGvDSsv~a~lL~~~----G~eV~av~~~~~---~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~ 75 (362)
T PRK14664 3 ESKKRVLVGMSGGIDSTATCLMLQEQ----GYEIVGVTMRVW---GDEPQDARELAARMGIEHYVADERVPFKDTIVKNF 75 (362)
T ss_pred CCCCEEEEEEeCCHHHHHHHHHHHHc----CCcEEEEEecCc---chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHHHh
Confidence 34578999999999999999998875 567999999864 3345679999999999999988776544211
Q ss_pred -----cccCCCCcccchh-hcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcccccccccc
Q psy3751 111 -----VRLRKPNTDSRNA-AQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTR 184 (967)
Q Consensus 111 -----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 184 (967)
....+++|..|.. +|...+.+.+++.|.+.++|||.+.....-..+.++.+.+.... ... .++...
T Consensus 76 ~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~~~~~~~l~~g~D~~kD------Qsy--fl~~l~ 147 (362)
T PRK14664 76 IDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKD------QSY--FLWRLG 147 (362)
T ss_pred HHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccccCCCeEEEEEcCCCcch------HHH--HHHhcC
Confidence 1233456667764 46667899999999999999999854322122233333321100 000 000000
Q ss_pred CCCCCceEEeeCCCCcHHHHHHHHHHcCCCCC
Q psy3751 185 VHPGENIRVFPISNWTELDIWQYIEREKIILP 216 (967)
Q Consensus 185 ~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~ 216 (967)
.......+.||.+++++||.+|++++|+|..
T Consensus 148 -~~~l~~~ifPLg~~~K~evr~~A~~~gl~~~ 178 (362)
T PRK14664 148 -QDILRRCIFPLGNYTKQTVREYLREKGYEAK 178 (362)
T ss_pred -HHHHhHHhccCccCCHHHHHHHHHHcCCCCC
Confidence 0001146789999999999999999999763
No 351
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.29 E-value=5e-11 Score=121.55 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=92.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec---
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT--- 401 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--- 401 (967)
+||+++|..++|||||++++++. .|. .+....+..+.....+..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~------------------------~f~---------~~~~~Tig~~~~~k~~~~~~~ 47 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKN------------------------QVL---------GRPSWTVGCSVDVKHHTYKEG 47 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC------------------------CCC---------CCCCcceeeeEEEEEEEEcCC
Confidence 47999999999999999999861 110 011111111222222222
Q ss_pred ----CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----------------
Q psy3751 402 ----PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---------------- 461 (967)
Q Consensus 402 ----~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---------------- 461 (967)
....+.||||+|+++|.......++.+|++|+|+|.++.. . ......++.....
T Consensus 48 ~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~-----S-f~~l~~W~~ei~~~~~~~~~~~~~~~~~~ 121 (202)
T cd04102 48 TPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRK-----S-SQNLQRWSLEALNKDTFPTGLLVTNGDYD 121 (202)
T ss_pred CCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChH-----H-HHHHHHHHHHHHHhhcccccccccccccc
Confidence 1246789999999999877777789999999999998821 0 1111222222211
Q ss_pred ---cC--CCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 462 ---LR--IKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 462 ---~~--~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.+ -.|+|+|.||+|+.+......+.....-..+.++++. +.+.+++..+.-+..
T Consensus 122 ~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~---~~i~~~c~~~~~~~~ 180 (202)
T cd04102 122 SEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA---EEINLNCTNGRLLAA 180 (202)
T ss_pred ccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCC---ceEEEecCCcccccC
Confidence 11 2359999999999754322222233334556777777 567777776665543
No 352
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.29 E-value=1.7e-11 Score=124.75 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=89.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
.||+++|..|+|||||+++|... .. . .+....+.... ...+..+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~--~~----------------------~---------~~~~~t~~~~~-~~~~~~~~~ 47 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLG--EF----------------------P---------EEYHPTVFENY-VTDCRVDGK 47 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CC----------------------C---------cccCCcccceE-EEEEEECCE
Confidence 47999999999999999999741 10 0 00000000000 0112222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH-HcCCCeEEEEEecCCccCcCH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH-LLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~-~~~~~~iivviNK~D~~~~~~ 481 (967)
...+.++||||++.|.......++.+|++++++|.+..+ .+.......+..+. ...-.++|+|.||+|+.+...
T Consensus 48 ~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~-----s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (187)
T cd04129 48 PVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD-----SLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAV 122 (187)
T ss_pred EEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcc
Confidence 245789999998877544334568899999999987611 11111111222222 222345999999999864211
Q ss_pred -------HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 -------IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 -------~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.++.. .+....+.+.++. .+++++||++|.|++++
T Consensus 123 ~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~ 164 (187)
T cd04129 123 AKEEYRTQRFVP-IQQGKRVAKEIGA--KKYMECSALTGEGVDDV 164 (187)
T ss_pred cccccccCCcCC-HHHHHHHHHHhCC--cEEEEccCCCCCCHHHH
Confidence 01111 1223445556653 37899999999999985
No 353
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.28 E-value=3.5e-11 Score=125.41 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=92.3
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+....+||+++|+.|+|||||+++++... + ..+....+..+.....+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~------------------------~---------~~~~~~t~~~~~~~~~~ 51 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGE------------------------F---------EKKYIPTLGVEVHPLKF 51 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCC------------------------C---------CCCCCCccceEEEEEEE
Confidence 44566899999999999999998776411 0 00001111122222222
Q ss_pred --ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHH-HHHHHH-HHcCCCeEEEEEecCC
Q psy3751 400 --NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK-RHSIIA-HLLRIKHIIIAVNKMD 475 (967)
Q Consensus 400 --~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~-~~~~~~-~~~~~~~iivviNK~D 475 (967)
..+...+.++||||+++|..........+|++++|+|.++ ...-+.. ..+... ......++++|.||+|
T Consensus 52 ~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~D 124 (215)
T PTZ00132 52 YTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS-------RITYKNVPNWHRDIVRVCENIPIVLVGNKVD 124 (215)
T ss_pred EECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 2234578899999999887666666788999999999987 2211111 111111 1122334888999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+... . .....+.+..++ .++++||++|.|+++.
T Consensus 125 l~~~~~-~-----~~~~~~~~~~~~---~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 125 VKDRQV-K-----ARQITFHRKKNL---QYYDISAKSNYNFEKP 159 (215)
T ss_pred CccccC-C-----HHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 864211 0 111223444444 7899999999999874
No 354
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.27 E-value=3.7e-11 Score=123.40 Aligned_cols=114 Identities=22% Similarity=0.371 Sum_probs=73.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee--cCC
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN--TPK 403 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~ 403 (967)
+|+++|++|||||||+++|....-. ... ..++.+.....+. ..+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~-----------------------------~t~-----~s~~~~~~~~~~~~~~~~ 47 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR-----------------------------STV-----TSIEPNVATFILNSEGKG 47 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-----------------------------Ccc-----CcEeecceEEEeecCCCC
Confidence 6899999999999999999862100 000 0001111111111 235
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccC-CEEEEEEeCCCCCCCCCCCchhhHHHHHHH----HHH--cCCCeEEEEEecCCc
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTA-DAVIILIDASKIKFNPSVNLLTQTKRHSII----AHL--LRIKHIIIAVNKMDL 476 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~a-D~~ilVvda~~~~~~~~~g~~~~t~~~~~~----~~~--~~~~~iivviNK~D~ 476 (967)
..+.+||||||.+|...+...++.+ +++|+|||+.... .....+.+.+.. ... -++| +++|+||+|+
T Consensus 48 ~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~-----~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl 121 (203)
T cd04105 48 KKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ-----KNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDL 121 (203)
T ss_pred ceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch-----hHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhh
Confidence 6799999999999988888888888 9999999998710 011222333221 111 2444 9999999998
Q ss_pred cCc
Q psy3751 477 INY 479 (967)
Q Consensus 477 ~~~ 479 (967)
...
T Consensus 122 ~~a 124 (203)
T cd04105 122 FTA 124 (203)
T ss_pred ccc
Confidence 754
No 355
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.27 E-value=4.6e-11 Score=121.71 Aligned_cols=106 Identities=13% Similarity=0.021 Sum_probs=66.7
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHH-HHHHHHHH-cCCCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK-RHSIIAHL-LRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~-~~~~~~~~-~~~~~iivviNK~D~~~~~ 480 (967)
...+.||||+|.+++.. ...++.+|++|+|+|.++.. .+ .... ..+...+. ..-.++|+|.||+|+.+..
T Consensus 65 ~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~-----Sf-~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 136 (195)
T cd01873 65 SVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPN-----SL-RNVKTMWYPEIRHFCPRVPVILVGCKLDLRYAD 136 (195)
T ss_pred EEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChh-----HH-HHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 35688999999876432 23568999999999998721 01 1111 12222222 2223489999999986421
Q ss_pred HH---------------HHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QI---------------FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~---------------~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. ...-..++.+.+.+++++ +++.+||++|.|++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~---~~~E~SAkt~~~V~e~ 187 (195)
T cd01873 137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGI---PYYETSVVTQFGVKDV 187 (195)
T ss_pred cchhhhcccccccccccCCccCHHHHHHHHHHhCC---EEEEcCCCCCCCHHHH
Confidence 00 001122345667777775 8999999999999985
No 356
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.26 E-value=5.2e-11 Score=131.41 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=108.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCCCC-CeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhccc----
Q psy3751 37 CNNPVLLFSGGKDSVVLLRLAEKAFRPSRF-PFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTV---- 111 (967)
Q Consensus 37 ~~~i~va~SGGKDS~vlL~l~~~~~~~~~~-~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~---- 111 (967)
+++++|+||||+||+++++++++.+ +. ++.++|+|+|.. ++..+.+++.|+++|++++++...+.+.+...
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~~---g~~~Viav~vd~g~~-~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i 77 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEKY---GYDEVITVTVDVGQP-EEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAI 77 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhc---CCCEEEEEEEECCCC-hHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHH
Confidence 3689999999999999999997753 43 799999999963 45678899999999999999888765553111
Q ss_pred ------ccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccch--hhHhhhccccccccccCCCCCCCCCCccccccccc
Q psy3751 112 ------RLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRD--EEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNT 183 (967)
Q Consensus 112 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~d--es~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 183 (967)
..++.++..|..++...+.+.+++.|.+++++|++.+ |.. |... .+...
T Consensus 78 ~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~-rfe~-~~~a~--------------------- 134 (394)
T PRK13820 78 KANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQL-RFEA-VFRAS--------------------- 134 (394)
T ss_pred HhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHH-HHHH-hhHhh---------------------
Confidence 1112233456666777789999999999999999654 442 2111 01100
Q ss_pred cCCCCCceEEeeCCC--CcHHHHHHHHHHcCCCCC
Q psy3751 184 RVHPGENIRVFPISN--WTELDIWQYIEREKIILP 216 (967)
Q Consensus 184 ~~~~~~~~~i~Pl~~--wt~~dV~~yi~~~~lp~~ 216 (967)
....+.|+.+ ++++||.+|++++|||+.
T Consensus 135 -----~l~viaP~re~~ltK~ei~~ya~~~gip~~ 164 (394)
T PRK13820 135 -----DLEVIAPIRELNLTREWEIEYAKEKGIPVP 164 (394)
T ss_pred -----cCeeeCchhccCCCHHHHHHHHHHcCCCCC
Confidence 1234679887 599999999999999985
No 357
>KOG0095|consensus
Probab=99.25 E-value=7.3e-11 Score=106.46 Aligned_cols=150 Identities=24% Similarity=0.269 Sum_probs=100.6
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeec--eeeee
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVA--YRYFN 400 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~ 400 (967)
-.++|+++|+.|+|||.|+.+++. |.. + .-.|.||.+. ...++
T Consensus 6 flfkivlvgnagvgktclvrrftq--glf-------------------------------p--pgqgatigvdfmiktve 50 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQ--GLF-------------------------------P--PGQGATIGVDFMIKTVE 50 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhc--cCC-------------------------------C--CCCCceeeeeEEEEEEE
Confidence 468999999999999999999986 211 0 0124444433 33444
Q ss_pred cC--CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 401 TP--KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 401 ~~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
.+ ..++.+|||+|+++|...+.+..+.|+.+|||.|.+- +.| ...+.....+.....-.+- -|+|.||+|+.
T Consensus 51 v~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsf----dclpewlreie~yan~kvl-kilvgnk~d~~ 125 (213)
T KOG0095|consen 51 VNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSF----DCLPEWLREIEQYANNKVL-KILVGNKIDLA 125 (213)
T ss_pred ECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcch----hhhHHHHHHHHHHhhcceE-EEeeccccchh
Confidence 44 4567899999999999999999999999999999886 344 4444443333332222332 37789999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+ .-..+-+++.+. . +.-|+.+||+..+|++.+
T Consensus 126 drre-vp~qigeefs~~---q---dmyfletsakea~nve~l 160 (213)
T KOG0095|consen 126 DRRE-VPQQIGEEFSEA---Q---DMYFLETSAKEADNVEKL 160 (213)
T ss_pred hhhh-hhHHHHHHHHHh---h---hhhhhhhcccchhhHHHH
Confidence 6432 222233322222 1 225688999999999986
No 358
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.25 E-value=5.4e-11 Score=120.67 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=97.9
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeece-eee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAY-RYF 399 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~ 399 (967)
.++++||.++|.+|+|||||+|+|++....- . ..-|++.+... ...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~---------------------v------------~~vg~~t~~~~~~~~ 82 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKE---------------------V------------SKVGVGTDITTRLRL 82 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCce---------------------e------------eecccCCCchhhHHh
Confidence 4678999999999999999999999522110 0 00122222211 112
Q ss_pred ecCCceEEEeeChhhHH-------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCC-CeEEEEE
Q psy3751 400 NTPKRKFIIADTPGHEQ-------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAV 471 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~-~~iivvi 471 (967)
.+++..++||||||..+ |.......+...|++++++|+.+ .......+.+.-....+. +++++++
T Consensus 83 ~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~d-------raL~~d~~f~~dVi~~~~~~~~i~~V 155 (296)
T COG3596 83 SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADD-------RALGTDEDFLRDVIILGLDKRVLFVV 155 (296)
T ss_pred hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCC-------ccccCCHHHHHHHHHhccCceeEEEE
Confidence 33457899999999543 77777778889999999999988 322222333332333344 6799999
Q ss_pred ecCCccCc----C----------HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 472 NKMDLINY----N----------QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 472 NK~D~~~~----~----------~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|..|.... + +...++-.+.+.+++.. --|++.+|+..++|++.+
T Consensus 156 tQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~----V~pV~~~~~r~~wgl~~l 213 (296)
T COG3596 156 TQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE----VKPVVAVSGRLPWGLKEL 213 (296)
T ss_pred ehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh----cCCeEEeccccCccHHHH
Confidence 99997532 1 11122222333333333 238899999999999884
No 359
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.24 E-value=1.1e-10 Score=128.94 Aligned_cols=149 Identities=18% Similarity=0.124 Sum_probs=105.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhC-------CcEEEEecch--hhhh
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLG-------ETLIVRSVED--SIMK 108 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~g-------i~i~~~~~~~--~~~~ 108 (967)
+++++++|||+||.|+++++.+. +.++.++|+|++ ++..+.++++++.++ +++.++.... .+..
T Consensus 181 gkvlvllSGGiDSpVAa~ll~kr----G~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~~~v~~ 253 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMMKR----GVEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQERERIIQ 253 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHHHc----CCeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEChHHHHHHHH
Confidence 57889999999999999999997 778999999988 567888999999877 4566655432 1111
Q ss_pred cccc--cCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCC
Q psy3751 109 GTVR--LRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVH 186 (967)
Q Consensus 109 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 186 (967)
.... .....|..|..+....+.+.++++|+++++|||..+|-++-...++.-....
T Consensus 254 ~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~~~---------------------- 311 (381)
T PRK08384 254 KLKELKKENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYIVSQA---------------------- 311 (381)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHHHhcc----------------------
Confidence 1111 1122355555555566777788899999999999988654433222111110
Q ss_pred CCCceEEeeCCCCcHHHHHHHHHHcC-CCCC
Q psy3751 187 PGENIRVFPISNWTELDIWQYIEREK-IILP 216 (967)
Q Consensus 187 ~~~~~~i~Pl~~wt~~dV~~yi~~~~-lp~~ 216 (967)
.....++||..|+++||.+|+++.| .++.
T Consensus 312 -~~lpilRPLi~~dK~EIi~~Ar~iGT~~~s 341 (381)
T PRK08384 312 -SDLPIYRPLIGMDKEEIVAIAKTIGTFELS 341 (381)
T ss_pred -CCCcEEeeCCCCCHHHHHHHHHHcCCcccc
Confidence 1135799999999999999999999 5544
No 360
>PLN02347 GMP synthetase
Probab=99.21 E-value=1.1e-10 Score=134.99 Aligned_cols=180 Identities=14% Similarity=0.072 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC-hhhHHHHHHHHHHhCCcE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF-PEVISFRDNCISKLGETL 97 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~-pet~~~~~~~~~~~gi~i 97 (967)
++....+.++.+++.+...++++++||||+||+|+++++.++++ .++.++|+|+|... .|..+.++.+++++|+++
T Consensus 211 ~~~~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG---~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~ 287 (536)
T PLN02347 211 MQDVLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIG---DRLHCVFVDNGLLRYKEQERVMETFKRDLHLPV 287 (536)
T ss_pred cchHHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhC---CcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcE
Confidence 45556666777777777778999999999999999999999754 47999999999864 466566688999999999
Q ss_pred EEEecchhhhhcccccCCCCcccchhhcH---HHHHHHH----HHcCC--cEEEEeccchhhHh---hhcc------ccc
Q psy3751 98 IVRSVEDSIMKGTVRLRKPNTDSRNAAQS---ITLLETI----KEFKF--DACIGGARRDEEKA---RAKE------RIF 159 (967)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~--~~~~~G~R~des~~---R~~~------~~~ 159 (967)
+++...+.|...+.... .+...|..|++ ..+.+.+ .+.|. +.++.|+..+|-.+ |-.. .+-
T Consensus 288 ~vvd~~e~fl~~l~~~~-~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik 366 (536)
T PLN02347 288 TCVDASERFLSKLKGVT-DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIK 366 (536)
T ss_pred EEEeCcHHHHhhCCCCC-ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCCCCCcccccccee
Confidence 99998887666543333 44556666666 3444333 23444 67889999887543 2111 111
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 160 SFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 160 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
+..+..+. |.. -....+.||.+|+++||.+..++.|+|-+-.+
T Consensus 367 ~hhn~~~l-------~~~----------~~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~ 409 (536)
T PLN02347 367 SHHNVGGL-------PKD----------MKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLK 409 (536)
T ss_pred eecccccC-------hHH----------HHCccccchhhCcHHHHHHHHHHcCCCHHHhc
Confidence 11111110 000 01235789999999999999999999865566
No 361
>KOG0097|consensus
Probab=99.21 E-value=1.5e-10 Score=103.31 Aligned_cols=148 Identities=24% Similarity=0.297 Sum_probs=106.6
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.-+++.+|+|..|+|||.|+.+++.+ ++..++ -+.+.++++.+.++.
T Consensus 9 syifkyiiigdmgvgkscllhqftek----------kfmadc-----------------------phtigvefgtriiev 55 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEK----------KFMADC-----------------------PHTIGVEFGTRIIEV 55 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHH----------HHhhcC-----------------------CcccceecceeEEEe
Confidence 45789999999999999999999861 111111 123444555555665
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH----HHHHcCCCe--EEEEEec
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSI----IAHLLRIKH--IIIAVNK 473 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~----~~~~~~~~~--iivviNK 473 (967)
.+ .++.+|||.|+++|..-+.+..+.+-.+++|.|.+. ..|-.|+. -++.+-.|. ++++.||
T Consensus 56 sgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr----------rstynhlsswl~dar~ltnpnt~i~lignk 125 (215)
T KOG0097|consen 56 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNLTNPNTVIFLIGNK 125 (215)
T ss_pred cCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh----------hhhhhhHHHHHhhhhccCCCceEEEEecch
Confidence 55 467899999999999999999999999999999987 33444443 333343332 6778899
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.|+.......++ +.+.+.++.|+ .|+..||++|.|+++.
T Consensus 126 adle~qrdv~ye----eak~faeengl---~fle~saktg~nveda 164 (215)
T KOG0097|consen 126 ADLESQRDVTYE----EAKEFAEENGL---MFLEASAKTGQNVEDA 164 (215)
T ss_pred hhhhhcccCcHH----HHHHHHhhcCe---EEEEecccccCcHHHH
Confidence 999765444444 34567777776 8899999999999873
No 362
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.20 E-value=4.6e-10 Score=120.43 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=91.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
-.++|+++|+.|+|||||+|+|++..-... .+. .+.........++++.....++.+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~-------------~~~----------~~~~~~~~~~T~~i~~~~~~i~~~ 59 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPS-------------DYP----------PDPAEEHIDKTVEIKSSKAEIEEN 59 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccc-------------cCC----------CCccccccCCceEEEEEEEEEEEC
Confidence 357999999999999999999987321100 000 000011122233344444444444
Q ss_pred C--ceEEEeeChhhHHH---------------------HHHHHh-----hc--ccCCEEEEEEeCCCCCCCCCCCchhhH
Q psy3751 403 K--RKFIIADTPGHEQY---------------------TRNMIT-----GA--STADAVIILIDASKIKFNPSVNLLTQT 452 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~---------------------~~~~~~-----~~--~~aD~~ilVvda~~~~~~~~~g~~~~t 452 (967)
+ .++++|||||..++ +..... .+ ..+|+++++++++. .++....
T Consensus 60 g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~------~~l~~~D 133 (276)
T cd01850 60 GVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG------HGLKPLD 133 (276)
T ss_pred CEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC------CCCCHHH
Confidence 4 46899999994332 111111 11 25789999999874 1455555
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccc
Q psy3751 453 KRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISA 510 (967)
Q Consensus 453 ~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa 510 (967)
.+.+..+.. +++ +|+|+||+|+.. +......++.+.+.++..++ ++++.+.
T Consensus 134 ~~~lk~l~~-~v~-vi~VinK~D~l~--~~e~~~~k~~i~~~l~~~~i---~~~~~~~ 184 (276)
T cd01850 134 IEFMKRLSK-RVN-IIPVIAKADTLT--PEELKEFKQRIMEDIEEHNI---KIYKFPE 184 (276)
T ss_pred HHHHHHHhc-cCC-EEEEEECCCcCC--HHHHHHHHHHHHHHHHHcCC---ceECCCC
Confidence 666665553 555 899999999985 33345566777777777765 6666543
No 363
>PLN00023 GTP-binding protein; Provisional
Probab=99.19 E-value=1.9e-10 Score=122.62 Aligned_cols=141 Identities=19% Similarity=0.148 Sum_probs=85.7
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....+||+++|..++|||||+++|+.. .+. .+....+..+.....+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g------------------------~F~---------~~~~pTIG~d~~ik~I~ 64 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKG------------------------SSI---------ARPPQTIGCTVGVKHIT 64 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcC------------------------Ccc---------cccCCceeeeEEEEEEE
Confidence 345689999999999999999999861 110 00111111121111122
Q ss_pred c---------------CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--
Q psy3751 401 T---------------PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR-- 463 (967)
Q Consensus 401 ~---------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~-- 463 (967)
+ ....+.||||+|++.|.......++.+|++|+|+|.++.. ........+..+...+
T Consensus 65 ~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~------SFenL~kWl~eI~~~~~~ 138 (334)
T PLN00023 65 YGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR------TKTSLQKWASEVAATGTF 138 (334)
T ss_pred ECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHH------HHHHHHHHHHHHHHhccc
Confidence 1 1245889999999999887777789999999999998711 1111222222222221
Q ss_pred ------------CCeEEEEEecCCccCcCHHHH--HHHHHHHHHHHHHcCC
Q psy3751 464 ------------IKHIIIAVNKMDLINYNQIFY--KRIVYAYKKFAEDIHF 500 (967)
Q Consensus 464 ------------~~~iivviNK~D~~~~~~~~~--~~i~~~~~~~~~~~~~ 500 (967)
..++|+|.||+|+.+..+.+. ....++.+++.++.++
T Consensus 139 s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 139 SAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 134999999999975321011 1234556777777765
No 364
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.19 E-value=1.8e-10 Score=122.11 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcE
Q psy3751 20 DWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETL 97 (967)
Q Consensus 20 ~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i 97 (967)
+...+.....|++.++.. ++++|++|||+||+++++++.+++. +.++.+++++.+...++..+.++++++++|+++
T Consensus 4 ~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~--~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~ 81 (248)
T cd00553 4 EEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALG--RENVLALFMPSRYSSEETREDAKELAEALGIEH 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhC--cccEEEEECCCCCCCHHHHHHHHHHHHHhCCeE
Confidence 444455556666655543 7899999999999999999999865 247899999998777888999999999999999
Q ss_pred EEEecchhhhhccccc----C-----CCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCC
Q psy3751 98 IVRSVEDSIMKGTVRL----R-----KPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQW 168 (967)
Q Consensus 98 ~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~ 168 (967)
+++.....+....... . ...+..|.++|...+...+.++|..++.||+. +|..-. .+ ..++
T Consensus 82 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn~-~E~~~G----~~---t~~g-- 151 (248)
T cd00553 82 VNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGNK-SELLLG----YF---TKYG-- 151 (248)
T ss_pred EEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCcH-hHHHhC----Ce---eccC--
Confidence 9987765443211111 1 11245566678888999999999888888873 333211 00 0100
Q ss_pred CCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCc
Q psy3751 169 NPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSL 218 (967)
Q Consensus 169 ~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~l 218 (967)
.....++||.+.++.||+.+++..++|..-+
T Consensus 152 -------------------d~~~~i~Pl~~l~K~eV~~la~~~~ip~~i~ 182 (248)
T cd00553 152 -------------------DGAADINPIGDLYKTQVRELARYLGVPESII 182 (248)
T ss_pred -------------------CcccCccccCCCcHHHHHHHHHHHCchHHHh
Confidence 0124689999999999999999999885433
No 365
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.19 E-value=2.1e-10 Score=127.29 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=104.7
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchhhhhcc--cccCC
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDSIMKGT--VRLRK 115 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~~~~~~--~~~~~ 115 (967)
+++++||||+||+++++++.+. +.++.++|+|+|.. .+..+.+++.|+.+|+ +++++.....|.... .....
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~Gq~-~~e~~~a~~~a~~lGi~~~~viD~~~ef~~~~~~~~i~~ 75 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVGQP-EEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFAAIQA 75 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecCCC-hHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhhchhhhcC
Confidence 4789999999999999999876 56899999999954 5678889999999998 799888876665441 11222
Q ss_pred CCcccchh---------hcHHHHHHHHHHcCCcEEEEeccchhhHh-hhccccccccccCCCCCCCCCCccccccccccC
Q psy3751 116 PNTDSRNA---------AQSITLLETIKEFKFDACIGGARRDEEKA-RAKERIFSFRDKFGQWNPKSQRPELWNLYNTRV 185 (967)
Q Consensus 116 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~G~R~des~~-R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 185 (967)
..+..|.+ +....+.+.+++.|.++++.|++...... |........
T Consensus 76 n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~------------------------ 131 (394)
T TIGR00032 76 NAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLL------------------------ 131 (394)
T ss_pred CccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHh------------------------
Confidence 22333321 22234778888899999999997643322 321111000
Q ss_pred CCCCceEEeeC--CCCcHHHHHHHHHHcCCCCC
Q psy3751 186 HPGENIRVFPI--SNWTELDIWQYIEREKIILP 216 (967)
Q Consensus 186 ~~~~~~~i~Pl--~~wt~~dV~~yi~~~~lp~~ 216 (967)
..+.-.++|+ ..++++|+.+|++++|+|+.
T Consensus 132 -~~~l~viaPLrew~l~r~ei~~ya~~~Gip~~ 163 (394)
T TIGR00032 132 -NPDLKVIAPWRDLNFTREEEIEYAIQCGIPYP 163 (394)
T ss_pred -CCCCeEECchhhcCCCHHHHHHHHHHcCCCee
Confidence 0123478999 45699999999999999885
No 366
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.18 E-value=2.7e-10 Score=116.89 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=104.2
Q ss_pred cEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhh--h-cccccCC-
Q psy3751 40 PVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIM--K-GTVRLRK- 115 (967)
Q Consensus 40 i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~--~-~~~~~~~- 115 (967)
.+|++|||+||+++++++.+. +.++.++++|++....+..+.++++++.+|++++++....... . .......
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~----g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~ 76 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDE----GYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALTDESEI 76 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHc----CCcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhcccccccccCCCCC
Confidence 379999999999999999885 4579999999987655677899999999999999886653211 0 0000000
Q ss_pred ---------CCcccchhhcHHH----HHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcccccccc
Q psy3751 116 ---------PNTDSRNAAQSIT----LLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYN 182 (967)
Q Consensus 116 ---------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 182 (967)
..+..|..+|... ....++++|.+.+++|++.+|-..-. | .+|.++...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~-------d----------~~~~f~~~~~ 139 (201)
T TIGR00364 77 PPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYP-------D----------CRDEFVKAFN 139 (201)
T ss_pred CCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCC-------C----------CcHHHHHHHH
Confidence 0112233344333 45677789999999999998842100 0 0000000000
Q ss_pred c---cCCCCCceEEeeCCCCcHHHHHHHHHHcC---CCCCCcc
Q psy3751 183 T---RVHPGENIRVFPISNWTELDIWQYIEREK---IILPSLY 219 (967)
Q Consensus 183 ~---~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~---lp~~~lY 219 (967)
. .....+...++|+++|++.||.++.+++| +|+.+-+
T Consensus 140 ~~~~~~~~~~~~i~~Pl~~~~K~eI~~la~~~g~~~~~~~~t~ 182 (201)
T TIGR00364 140 HALNLGMLTPVKIRAPLMDLTKAEIVQLADELGVLDLVIKLTY 182 (201)
T ss_pred HHHHhhcCCCeEEEECCcCCCHHHHHHHHHHcCCccccHhhCC
Confidence 0 00112245689999999999999999999 8766655
No 367
>PRK13980 NAD synthetase; Provisional
Probab=99.17 E-value=4.1e-10 Score=120.25 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET 96 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~ 96 (967)
.+...+.....|++.+... ++++|++|||+||+++++++.+++. +.++.+++++++...++..+.++++++++|++
T Consensus 10 ~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~--~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~ 87 (265)
T PRK13980 10 YEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALG--KENVLALLMPSSVSPPEDLEDAELVAEDLGIE 87 (265)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhC--ccceEEEEeeCCCCCHHHHHHHHHHHHHhCCC
Confidence 3445556667777766665 6899999999999999999999864 24789999999987788899999999999999
Q ss_pred EEEEecchhhhh---ccccc-CCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCC
Q psy3751 97 LIVRSVEDSIMK---GTVRL-RKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKS 172 (967)
Q Consensus 97 i~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~ 172 (967)
++++........ ..... ....+..|.++|...+...+.++|..++.||.+.+ ..- ..+. .++.
T Consensus 88 ~~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~sE-~~~----G~~t---~~gD----- 154 (265)
T PRK13980 88 YKVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKSE-LLL----GYFT---KYGD----- 154 (265)
T ss_pred eEEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHhH-HHh----CCcc---CCCC-----
Confidence 999876543322 11110 11224566677778899999998877777775533 211 0111 1000
Q ss_pred CCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 173 QRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 173 ~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
...-++||.++++.||++..+..|+|
T Consensus 155 ----------------~~~~l~Pl~~l~K~eV~~la~~lgip 180 (265)
T PRK13980 155 ----------------GAVDLNPIGDLYKTQVRELARHLGVP 180 (265)
T ss_pred ----------------cccCcccCCCCcHHHHHHHHHHHCch
Confidence 11248999999999999999999987
No 368
>KOG0075|consensus
Probab=99.16 E-value=1.2e-10 Score=105.35 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=103.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.+.+.++|--+||||||+|.... |... +..+-|+.+..+.++.++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~--g~~~---------------------------------edmiptvGfnmrk~tkgn 64 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIAR--GQYL---------------------------------EDMIPTVGFNMRKVTKGN 64 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEee--ccch---------------------------------hhhcccccceeEEeccCc
Confidence 35699999999999999998764 1110 112345555566677777
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF 483 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 483 (967)
..+.++|.||+..|...+.+..+.+|+++++|||.+++ ...+.....+..+.....-|+| ++|..||.|+.++-..
T Consensus 65 vtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~--k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~~- 140 (186)
T KOG0075|consen 65 VTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD--KLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALSK- 140 (186)
T ss_pred eEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc--cchhhHHHHHHHhcchhhcCCc-EEEecccccCcccccH-
Confidence 88999999999999999999999999999999999832 1111222222222233334666 8899999999875321
Q ss_pred HHHHHHHHHHHHHHcCC-----ccceEEeccccCCCcccc
Q psy3751 484 YKRIVYAYKKFAEDIHF-----QNINTIPISALNGDNIIS 518 (967)
Q Consensus 484 ~~~i~~~~~~~~~~~~~-----~~~~ii~iSa~~g~gi~~ 518 (967)
..+..++|. .++-.+.||+++..|++.
T Consensus 141 --------~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 141 --------IALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred --------HHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 123444454 356678899999999986
No 369
>KOG0410|consensus
Probab=99.15 E-value=8.1e-11 Score=120.81 Aligned_cols=146 Identities=23% Similarity=0.196 Sum_probs=99.9
Q ss_pred cccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeecee
Q psy3751 318 VFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYR 397 (967)
Q Consensus 318 ~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~ 397 (967)
.....+...|++||++|+|||||+++|+. ......+++ --|.|++..
T Consensus 172 gr~~~s~pviavVGYTNaGKsTLikaLT~-Aal~p~drL--------------------------------FATLDpT~h 218 (410)
T KOG0410|consen 172 GREGESSPVIAVVGYTNAGKSTLIKALTK-AALYPNDRL--------------------------------FATLDPTLH 218 (410)
T ss_pred ccccCCCceEEEEeecCccHHHHHHHHHh-hhcCccchh--------------------------------heeccchhh
Confidence 34555677899999999999999999995 222222211 235666555
Q ss_pred eeecC-CceEEEeeChhhH--------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCC---
Q psy3751 398 YFNTP-KRKFIIADTPGHE--------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIK--- 465 (967)
Q Consensus 398 ~~~~~-~~~~~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~--- 465 (967)
..... +..+.+.||-|+- .-+..++.....||++++|+|.+.+ .+..|....+..++.+|++
T Consensus 219 ~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP------~ae~q~e~Vl~vL~~igv~~~p 292 (410)
T KOG0410|consen 219 SAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHP------NAEEQRETVLHVLNQIGVPSEP 292 (410)
T ss_pred hccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCc------cHHHHHHHHHHHHHhcCCCcHH
Confidence 55554 4567899999942 2234556667889999999999985 3456666777788888885
Q ss_pred ---eEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 466 ---HIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 466 ---~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+|=|=||+|..+...+ . +....+++||++|+|+.++
T Consensus 293 kl~~mieVdnkiD~e~~~~e------------~-----E~n~~v~isaltgdgl~el 332 (410)
T KOG0410|consen 293 KLQNMIEVDNKIDYEEDEVE------------E-----EKNLDVGISALTGDGLEEL 332 (410)
T ss_pred HHhHHHhhccccccccccCc------------c-----ccCCccccccccCccHHHH
Confidence 25667788887642110 0 1112589999999999883
No 370
>KOG0091|consensus
Probab=99.15 E-value=2.7e-10 Score=104.83 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=101.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP- 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 402 (967)
.+++++||..-+|||+|+..++. |. | ++-+...+.+|.-.+.++..
T Consensus 8 qfrlivigdstvgkssll~~ft~--gk----------------------f---------aelsdptvgvdffarlie~~p 54 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTE--GK----------------------F---------AELSDPTVGVDFFARLIELRP 54 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhc--Cc----------------------c---------cccCCCccchHHHHHHHhcCC
Confidence 46899999999999999999985 11 1 11111222333322333332
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHHHH-HHcC-C--CeEEEEEecCC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSIIA-HLLR-I--KHIIIAVNKMD 475 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~~~-~~~~-~--~~iivviNK~D 475 (967)
+ .++.+|||+|+++|...+.+..+++=++++|.|.++ ..|| .....+.-+ ...+ . +-+.+|..|+|
T Consensus 55 g~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfe-------hv~~w~~ea~m~~q~P~k~VFlLVGhKsD 127 (213)
T KOG0091|consen 55 GYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFE-------HVENWVKEAAMATQGPDKVVFLLVGHKSD 127 (213)
T ss_pred CcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHH-------HHHHHHHHHHHhcCCCCeeEEEEeccccc
Confidence 2 367899999999999999999999999999999998 1221 111111111 1122 2 22567899999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+....+. ..++-+++.+..|+ .||.+||++|.|+++-
T Consensus 128 L~SqRqV----t~EEaEklAa~hgM---~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 128 LQSQRQV----TAEEAEKLAASHGM---AFVETSAKNGCNVEEA 164 (213)
T ss_pred hhhhccc----cHHHHHHHHHhcCc---eEEEecccCCCcHHHH
Confidence 9865443 33455678888898 8999999999999974
No 371
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.15 E-value=2.1e-10 Score=119.67 Aligned_cols=152 Identities=22% Similarity=0.228 Sum_probs=90.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee-cC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN-TP 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~ 402 (967)
.--|++||.||+|||||+++++...-.| ..+.| .|+....-.+. ..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKI-------------------adYpF--------------TTL~PnLGvV~~~~ 205 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKI-------------------ADYPF--------------TTLVPNLGVVRVDG 205 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcc-------------------cCCcc--------------ccccCcccEEEecC
Confidence 3459999999999999999999754443 11111 23322222233 34
Q ss_pred CceEEEeeChhh-----------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHH----HHHHHHHHcCCCeE
Q psy3751 403 KRKFIIADTPGH-----------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK----RHSIIAHLLRIKHI 467 (967)
Q Consensus 403 ~~~~~liDtpG~-----------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~----~~~~~~~~~~~~~i 467 (967)
+..+++-|.||. -+|++. +..+-+.++|||.+..+- ..+..+.. |.-.....+--++.
T Consensus 206 ~~sfv~ADIPGLIEGAs~G~GLG~~FLrH----IERt~vL~hviD~s~~~~---~dp~~~~~~i~~EL~~Y~~~L~~K~~ 278 (369)
T COG0536 206 GESFVVADIPGLIEGASEGVGLGLRFLRH----IERTRVLLHVIDLSPIDG---RDPIEDYQTIRNELEKYSPKLAEKPR 278 (369)
T ss_pred CCcEEEecCcccccccccCCCccHHHHHH----HHhhheeEEEEecCcccC---CCHHHHHHHHHHHHHHhhHHhccCce
Confidence 567999999992 245554 466899999999986211 01111111 11122222334568
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
+||+||||++.. ++.++...+.+ .+..++. .+.+|||.+++|++++..
T Consensus 279 ivv~NKiD~~~~-~e~~~~~~~~l---~~~~~~~--~~~~ISa~t~~g~~~L~~ 326 (369)
T COG0536 279 IVVLNKIDLPLD-EEELEELKKAL---AEALGWE--VFYLISALTREGLDELLR 326 (369)
T ss_pred EEEEeccCCCcC-HHHHHHHHHHH---HHhcCCC--cceeeehhcccCHHHHHH
Confidence 899999997653 44444443333 3334442 223399999999998643
No 372
>KOG0079|consensus
Probab=99.15 E-value=1.5e-10 Score=104.49 Aligned_cols=150 Identities=21% Similarity=0.198 Sum_probs=104.6
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++..|+|.+++|||+|+-++..+ .|.-++ ...+.+|+..+.+..+
T Consensus 7 hLfkllIigDsgVGKssLl~rF~dd------------------------tFs~sY---------itTiGvDfkirTv~i~ 53 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADD------------------------TFSGSY---------ITTIGVDFKIRTVDIN 53 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhc------------------------ccccce---------EEEeeeeEEEEEeecC
Confidence 4467889999999999999887641 121111 1233445555555555
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~ 478 (967)
+ .++.||||+|.+.|...+....+..+++++|.|.+.++ .....+..+..++.. .++ -|+|.||.|..+
T Consensus 54 G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~E------SF~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 54 GDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE------SFNNVKRWLEEIRNNCDSVP-KVLVGNKNDDPE 126 (198)
T ss_pred CcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchh------hhHhHHHHHHHHHhcCcccc-ceecccCCCCcc
Confidence 5 46789999999999999888899999999999999832 123344444444332 234 578899999875
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..- -..++.+.+..+.|+ ..|.+||++..|++..
T Consensus 127 Rrv----V~t~dAr~~A~~mgi---e~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 127 RRV----VDTEDARAFALQMGI---ELFETSAKENENVEAM 160 (198)
T ss_pred cee----eehHHHHHHHHhcCc---hheehhhhhcccchHH
Confidence 321 123445667777776 7899999999999874
No 373
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.15 E-value=3.1e-10 Score=125.26 Aligned_cols=148 Identities=19% Similarity=0.295 Sum_probs=106.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchhhhhcc------
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDSIMKGT------ 110 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~~~~~~------ 110 (967)
++++|+||||.||+++++++.+.+ +.++.++++|+|.. +..+.+++.++++|+ +++++...+.|++..
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l---G~eViavt~d~Gq~--~dle~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~ 77 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY---GCEVIAFTADVGQG--EELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIR 77 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh---CCeEEEEEEecCCH--HHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHH
Confidence 578999999999999999998853 45799999999975 567889999999997 677766665443211
Q ss_pred -----cccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccc--hhhHhhhccccccccccCCCCCCCCCCccccccccc
Q psy3751 111 -----VRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARR--DEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNT 183 (967)
Q Consensus 111 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~--des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 183 (967)
...++.+|..|+.+--..+.+.+++.|.+++++|++. +|.. |....+.-.. |
T Consensus 78 ~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~-rf~~g~~al~------------p-------- 136 (399)
T PRK00509 78 ANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQV-RFELGIAALA------------P-------- 136 (399)
T ss_pred hChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHH-HHHHHHHHhC------------C--------
Confidence 1122234444555555668888889999999999986 4442 2211110000 0
Q ss_pred cCCCCCceEEeeCCCC---cHHHHHHHHHHcCCCCC
Q psy3751 184 RVHPGENIRVFPISNW---TELDIWQYIEREKIILP 216 (967)
Q Consensus 184 ~~~~~~~~~i~Pl~~w---t~~dV~~yi~~~~lp~~ 216 (967)
..-.+.|+.+| +++|+.+|++++|||+.
T Consensus 137 -----el~VisPlre~~~~tK~eir~~A~~~Gipv~ 167 (399)
T PRK00509 137 -----DLKVIAPWREWDLKSREELIAYAEEHGIPIP 167 (399)
T ss_pred -----CCeeecchhhcCCCCHHHHHHHHHHcCCCCC
Confidence 12467899999 99999999999999975
No 374
>KOG0076|consensus
Probab=99.15 E-value=9.2e-11 Score=109.64 Aligned_cols=163 Identities=21% Similarity=0.171 Sum_probs=106.1
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+....|.|+|.-|||||||+.++-..- .+.... . ...+. -.|+......++
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~-----------~~~~~~-------l--------~~~ki--~~tvgLnig~i~ 65 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDF-----------SKAYGG-------L--------NPSKI--TPTVGLNIGTIE 65 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHH-----------HhhhcC-------C--------CHHHe--ecccceeeccee
Confidence 3456789999999999999999886411 110000 0 00010 112222333455
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC-CCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK-FNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~-~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
..+..+.|||..|++.....+...+..|+++|+||||++.+ |+ ....+.+..+..-...|+| +++.+||-|+.+.
T Consensus 66 v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~---~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~ 141 (197)
T KOG0076|consen 66 VCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFE---ESKTAFEKVVENEKLEGAP-VLVLANKQDLQNA 141 (197)
T ss_pred eccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHH---HHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhh
Confidence 55788999999999998888888889999999999999832 21 1112222233333445676 7888999999864
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.+ ..++...+.. .+..+-.+.++.||||++|+||.+
T Consensus 142 ~~--~~El~~~~~~-~e~~~~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 142 ME--AAELDGVFGL-AELIPRRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred hh--HHHHHHHhhh-hhhcCCccCccccchhhhcccHHH
Confidence 32 2444443333 445555577999999999999987
No 375
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.14 E-value=4.2e-10 Score=124.55 Aligned_cols=150 Identities=22% Similarity=0.261 Sum_probs=103.6
Q ss_pred cEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc-EEEEecchhhhhccc-----c-
Q psy3751 40 PVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET-LIVRSVEDSIMKGTV-----R- 112 (967)
Q Consensus 40 i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~-i~~~~~~~~~~~~~~-----~- 112 (967)
++|+||||.||+++++++.+... .++.++|+|.|... +..+.+++.|+++|++ ++++.....+..... .
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~---~eV~av~~d~Gq~~-~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an 76 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGG---YEVIAVTADVGQPE-EEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPAIQAN 76 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCC---CeEEEEEEECCCcc-hhHHHHHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhC
Confidence 57999999999999999988632 37999999999743 3358899999999995 888877665543110 0
Q ss_pred -----cCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHh-hhccccccccccCCCCCCCCCCccccccccccCC
Q psy3751 113 -----LRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKA-RAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVH 186 (967)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~-R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 186 (967)
.+.+.+..|+.+-...+.+.+++.|.+++++|++...... |... .+.. .
T Consensus 77 ~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~-~~~a------------------------l 131 (385)
T cd01999 77 ALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFEL-AFYA------------------------L 131 (385)
T ss_pred ccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHH-HHHh------------------------h
Confidence 0111222343343445678888899999999998632211 2111 1100 0
Q ss_pred CCCceEEeeCCCC---cHHHHHHHHHHcCCCCCCc
Q psy3751 187 PGENIRVFPISNW---TELDIWQYIEREKIILPSL 218 (967)
Q Consensus 187 ~~~~~~i~Pl~~w---t~~dV~~yi~~~~lp~~~l 218 (967)
......+.|+.+| +++|+..|++++|||+..-
T Consensus 132 ~pel~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~ 166 (385)
T cd01999 132 NPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVT 166 (385)
T ss_pred CCCCEEEcchhhhhcCCHHHHHHHHHHcCCCCccc
Confidence 0123578999999 9999999999999998643
No 376
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.13 E-value=3.5e-10 Score=126.42 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=99.3
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC-hhhHHHHHHHHHHh---C--CcEEEEecchhhhhccc
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF-PEVISFRDNCISKL---G--ETLIVRSVEDSIMKGTV 111 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~-pet~~~~~~~~~~~---g--i~i~~~~~~~~~~~~~~ 111 (967)
+++++++|||+||+|+++++.+. +.++.++|+|++... ++..+.++++++++ + +++..+......... .
T Consensus 173 ~kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i-~ 247 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFTDVQEEI-I 247 (371)
T ss_pred CeEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCHHHHHHH-H
Confidence 57889999999999999999886 678999999988543 56788899999887 4 356655544332211 1
Q ss_pred ccCCCCcccchhhcHHHH----HHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCC
Q psy3751 112 RLRKPNTDSRNAAQSITL----LETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHP 187 (967)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 187 (967)
. ..+....|-.||+ .+ .+.+.+.|++.+++|++.+|-..-...++.-... .
T Consensus 248 ~-~~~~~~~cv~cRr-~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~-----------------------~ 302 (371)
T TIGR00342 248 H-IIPEGYTCVLCRR-MMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQA-----------------------V 302 (371)
T ss_pred h-cCCCCceeHhHHH-HHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhc-----------------------c
Confidence 1 1122233333444 43 5666778999999999999875322222111000 0
Q ss_pred CCceEEeeCCCCcHHHHHHHHHHcCC
Q psy3751 188 GENIRVFPISNWTELDIWQYIEREKI 213 (967)
Q Consensus 188 ~~~~~i~Pl~~wt~~dV~~yi~~~~l 213 (967)
.....++||+.|+++||.+|.++.|.
T Consensus 303 ~~~~I~rPLi~~~K~EIi~~a~~iG~ 328 (371)
T TIGR00342 303 SNTPILRPLIGMDKEEIIELAKEIGT 328 (371)
T ss_pred CCCCEEeCCCCCCHHHHHHHHHHhCC
Confidence 11346789999999999999999993
No 377
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.13 E-value=7.4e-10 Score=115.91 Aligned_cols=157 Identities=20% Similarity=0.147 Sum_probs=97.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC--
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP-- 402 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 402 (967)
++|+++|..|+|||||+++|.+.. +..+....++...........
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~---------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 52 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE---------------------------------FPEGYPPTIGNLDPAKTIEPYRR 52 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc---------------------------------CcccCCCceeeeeEEEEEEeCCC
Confidence 899999999999999999998721 111122222222222222222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~iivviNK~D~~~~~ 480 (967)
..++.+|||+|+++|..-+......++++++++|..... .....+.+....+..+. -.++++|.||+|+....
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~-----~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRE-----SSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccch-----hhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 356889999999999988888889999999999988611 22333334443444433 24599999999998754
Q ss_pred HHHHHHHHHH---------HHHHHHHcCCccceEEecccc--CCCcccccc
Q psy3751 481 QIFYKRIVYA---------YKKFAEDIHFQNINTIPISAL--NGDNIISAS 520 (967)
Q Consensus 481 ~~~~~~i~~~---------~~~~~~~~~~~~~~ii~iSa~--~g~gi~~l~ 520 (967)
.... .+... ..............++.+|++ ++.|+.++.
T Consensus 128 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~ 177 (219)
T COG1100 128 SSSE-EILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELF 177 (219)
T ss_pred hHHH-HHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHH
Confidence 3211 11111 111111111112237899999 999998753
No 378
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.12 E-value=3.9e-10 Score=110.80 Aligned_cols=117 Identities=22% Similarity=0.307 Sum_probs=66.5
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
..|.++|..|||||+|+.+|....-. .+ + ...+..++. ..-...+.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~----------------~T---------~-----tS~e~n~~~----~~~~~~~~ 49 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTV----------------PT---------V-----TSMENNIAY----NVNNSKGK 49 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-------------------B-----------------SSEEEEC----CGSSTCGT
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcC----------------Ce---------e-----ccccCCceE----EeecCCCC
Confidence 45999999999999999999972100 00 0 000011110 00112456
Q ss_pred eEEEeeChhhHHHHHHHHhh---cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH---HHH--cCCCeEEEEEecCCc
Q psy3751 405 KFIIADTPGHEQYTRNMITG---ASTADAVIILIDASKIKFNPSVNLLTQTKRHSII---AHL--LRIKHIIIAVNKMDL 476 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~---~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~---~~~--~~~~~iivviNK~D~ 476 (967)
.+.+||+|||.+.....+.. ...+.++|+|||+.. +. .-..++-+++.- ... .+.++++++.||.|+
T Consensus 50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~--~~---~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl 124 (181)
T PF09439_consen 50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST--DQ---KELRDVAEYLYDILSDTEVQKNKPPILIACNKQDL 124 (181)
T ss_dssp CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT--HH---HHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTS
T ss_pred EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc--ch---hhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccc
Confidence 89999999999887766665 788999999999974 10 011222222211 111 234669999999999
Q ss_pred cCcC
Q psy3751 477 INYN 480 (967)
Q Consensus 477 ~~~~ 480 (967)
....
T Consensus 125 ~~A~ 128 (181)
T PF09439_consen 125 FTAK 128 (181)
T ss_dssp TT--
T ss_pred cccC
Confidence 8643
No 379
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.10 E-value=5.4e-10 Score=97.72 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=73.2
Q ss_pred ccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEee-cCceeecccc
Q psy3751 640 SLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINI-YEPISVDSYD 717 (967)
Q Consensus 640 ~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l-~~pi~~~~~~ 717 (967)
++++|+|+++||++ .+|.+||++++|+++..++|+|.++.. +.+++||.+.|++.| .+|+++++
T Consensus 2 ~~~~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~------------~~l~~g~~~~v~i~f~~~p~~~e~-- 67 (87)
T cd03708 2 ACWEFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSIDK------------DVLRTGDRALVRFRFLYHPEYLRE-- 67 (87)
T ss_pred ceeEEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEeccH------------hhccCCCeEEEEEEECCCCcEEcc--
Confidence 57899999999996 789999999999999999999998743 678999999999995 89998887
Q ss_pred CccCCccceeecccccccceEEEEEe
Q psy3751 718 NIRSTGSFILIDEITFQTVAAVYIIG 743 (967)
Q Consensus 718 ~~~~~grfil~d~~~~~~~~~~~~vg 743 (967)
+|||+||+ ++|+|.|.+..
T Consensus 68 ----~grf~lr~---g~tva~G~I~~ 86 (87)
T cd03708 68 ----GQRLIFRE---GRTKGVGEVTK 86 (87)
T ss_pred ----CCeEEEEC---CCcEEEEEEEE
Confidence 79999965 48999888754
No 380
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.10 E-value=5.9e-10 Score=98.64 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=74.4
Q ss_pred ccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceee
Q psy3751 640 SLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISV 713 (967)
Q Consensus 640 ~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~ 713 (967)
++++|+|++.||++ .+|++|+++++|+|+.++.|+|..+. .++.|++||.+.|+|.|++|+++
T Consensus 2 ~~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~-----------~~~~l~~g~~~~v~i~l~~p~~~ 70 (93)
T cd03706 2 PHDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPP-----------GKEMVMPGEDTKVTLILRRPMVL 70 (93)
T ss_pred cceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCC-----------CCcEeCCCCEEEEEEEECCcEEE
Confidence 36899999999995 68999999999999999999998761 25679999999999999999999
Q ss_pred ccccCccCCccceeecccccccceEEEEEe
Q psy3751 714 DSYDNIRSTGSFILIDEITFQTVAAVYIIG 743 (967)
Q Consensus 714 ~~~~~~~~~grfil~d~~~~~~~~~~~~vg 743 (967)
++ +|||+||+ .++|+|.|.|+.
T Consensus 71 ~~------g~rf~lR~--~~~tvg~G~V~~ 92 (93)
T cd03706 71 EK------GQRFTLRD--GNRTIGTGLVTD 92 (93)
T ss_pred ee------CCEEEEEE--CCEEEEEEEEEe
Confidence 88 68999987 458999888754
No 381
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.09 E-value=5.2e-10 Score=98.41 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=71.6
Q ss_pred cceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeec
Q psy3751 641 LRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVD 714 (967)
Q Consensus 641 ~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~ 714 (967)
++.|+|++.+|+. .+|++|+++++|+|+.++.|+|..+. +++.|++||.+.|+|.+++|++++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-----------~~~~i~~g~~~~v~l~l~~pv~~~ 71 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-----------GTEMVMPGDNVKMTVELIHPIALE 71 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-----------cccccCCCCEEEEEEEECCcEEEe
Confidence 5889999999985 68999999999999999999998873 467799999999999999999988
Q ss_pred cccCccCCccceeecccccccceEEE
Q psy3751 715 SYDNIRSTGSFILIDEITFQTVAAVY 740 (967)
Q Consensus 715 ~~~~~~~~grfil~d~~~~~~~~~~~ 740 (967)
+ +|||+||+. ++|+|.|.
T Consensus 72 ~------~~rf~lR~~--~~tig~G~ 89 (90)
T cd03707 72 K------GLRFAIREG--GRTVGAGV 89 (90)
T ss_pred c------CCEEEEecC--CcEEEEEE
Confidence 8 689999873 67777664
No 382
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.07 E-value=2.5e-10 Score=106.73 Aligned_cols=115 Identities=25% Similarity=0.218 Sum_probs=67.8
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++|..|+|||||+++|++.... +....+...+.++.............
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP-----------------------------DNSVPEETSEITIGVDVIVVDGDRQS 51 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-------------------------------------SSTTSCEEEEEEEETTEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc-----------------------------ccccccccCCCcEEEEEEEecCCceE
Confidence 6899999999999999999973211 00000111122332223333334445
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHH---HHHHHH-cCCCeEEEEEecCC
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRH---SIIAHL-LRIKHIIIAVNKMD 475 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~---~~~~~~-~~~~~iivviNK~D 475 (967)
+.++|++|++.+.......+..+|++|+|+|.++.. -..+..+. +..... ..-.|+|+|.||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~------s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE------SLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH------HHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChH------HHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 899999998877654444478899999999999821 01122112 222221 12245999999998
No 383
>KOG0070|consensus
Probab=99.07 E-value=1.8e-10 Score=110.19 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=103.8
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+...+|+++|--+|||||++..|-. +.+ + ..--|+......++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~--~E~---------------------v-------------ttvPTiGfnVE~v~ 57 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKL--GEI---------------------V-------------TTVPTIGFNVETVE 57 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeecc--CCc---------------------c-------------cCCCccccceeEEE
Confidence 34568899999999999999998853 111 0 01125555556677
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH-HHH--HHcCCCeEEEEEecCCcc
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS-IIA--HLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~-~~~--~~~~~~~iivviNK~D~~ 477 (967)
+.+.++++||..|+.++...+.......+++|+|||+++.+ -....++.+ .++ ..++..++++..||.|+.
T Consensus 58 ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~------Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 58 YKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRE------RIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred EcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHH------HHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 88999999999999999999999999999999999999821 122233222 121 123455699999999998
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
++-.. .++.+.+. +..+...+..+-.++|.+|+|+.+
T Consensus 132 ~als~--~ei~~~L~--l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 132 GALSA--AEITNKLG--LHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred ccCCH--HHHHhHhh--hhccCCCCcEEeeccccccccHHH
Confidence 75321 22222211 112222456888999999999876
No 384
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.07 E-value=9.5e-10 Score=120.85 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=107.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchhhhhcccc----
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDSIMKGTVR---- 112 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~~~~~~~~---- 112 (967)
++++|+||||.||+++++++.+. +.++.++++|.|....+..+.+++.|+++|+ +++++.....+++....
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~----G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~ 78 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQER----GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVW 78 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHc----CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHh
Confidence 67899999999999999998885 5689999999998767778889999999998 69998887766543221
Q ss_pred -----cC-CCCcccchh-hcHHHHHHHHHHcCCcEEEEecc--chhhHhhhccccccccccCCCCCCCCCCccccccccc
Q psy3751 113 -----LR-KPNTDSRNA-AQSITLLETIKEFKFDACIGGAR--RDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNT 183 (967)
Q Consensus 113 -----~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~R--~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 183 (967)
.+ .|. .+|.+ ++-..+.+.+++.|.+++++|.+ .+|. .|....+.-..
T Consensus 79 aNa~y~G~yPl-~~~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq-~rfrpg~~Al~--------------------- 135 (400)
T PRK04527 79 AGEGYQGQYPL-LVSDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQ-VRFDLAVKALG--------------------- 135 (400)
T ss_pred cchhhcCCCCC-ccccHHHHHHHHHHHHHHCCCCEEEecCcCCCCch-hhccHHHHHhh---------------------
Confidence 11 222 22333 34456888888999999999997 3443 33322111000
Q ss_pred cCCCCCceEEeeCCCC------cHHHHHHHHHHcCCCCC
Q psy3751 184 RVHPGENIRVFPISNW------TELDIWQYIEREKIILP 216 (967)
Q Consensus 184 ~~~~~~~~~i~Pl~~w------t~~dV~~yi~~~~lp~~ 216 (967)
..-.+.|+.+| ..+|-.+|+++||||+.
T Consensus 136 -----el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 136 -----DYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred -----cCCccchHHHhcCcccccHHHHHHHHHHcCCCCC
Confidence 12357899988 56788999999999986
No 385
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.06 E-value=2.1e-09 Score=110.70 Aligned_cols=156 Identities=20% Similarity=0.160 Sum_probs=105.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc-EEEEecchhh--hh-cc---
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET-LIVRSVEDSI--MK-GT--- 110 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~-i~~~~~~~~~--~~-~~--- 110 (967)
++++|+||||.||+++++++.+. +.++.++++|.|......++.++++++++|++ ++++..+..- .. .+
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s~Lt~~ 77 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----YDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRD 77 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----CCeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence 46899999999999999998765 23689999999987777889999999999996 8877655211 00 00
Q ss_pred ----cccC---CCCcccchhhcHHHHHH----HHHHcCCcEEEEeccchhhH-hhhccccccccccCCCCCCCCCCcccc
Q psy3751 111 ----VRLR---KPNTDSRNAAQSITLLE----TIKEFKFDACIGGARRDEEK-ARAKERIFSFRDKFGQWNPKSQRPELW 178 (967)
Q Consensus 111 ----~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~G~R~des~-~R~~~~~~~~~~~~~~~~~~~~~p~~~ 178 (967)
.... ...+..|..+|...+.. ++...|.+.+++|.+.+|.. -|-. +|++.
T Consensus 78 ~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDc------------------r~~Fi 139 (231)
T PRK11106 78 SIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDC------------------RDEFV 139 (231)
T ss_pred cccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCC------------------CHHHH
Confidence 0000 11334555566655433 34568999999999998742 1111 11222
Q ss_pred ccccccC---CCCCceEEeeCCCCcHHHHHHHHHHcC-CCC
Q psy3751 179 NLYNTRV---HPGENIRVFPISNWTELDIWQYIEREK-IIL 215 (967)
Q Consensus 179 ~~~~~~~---~~~~~~~i~Pl~~wt~~dV~~yi~~~~-lp~ 215 (967)
..++... .........|+.+|++.||+...+..| +|+
T Consensus 140 ~A~~~~~~~~~~~~i~I~aPl~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 140 KALNHAVSLGMAKDIRFETPLMWLNKAETWALADYYGQLDL 180 (231)
T ss_pred HHHHHHHHhccCCCcEEEecCCCCCHHHHHHHHHHcCCccc
Confidence 2211110 012245679999999999999999999 887
No 386
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.05 E-value=2.6e-09 Score=116.14 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=28.1
Q ss_pred ceEEEeeChhh----HH---HHHHHHhhcccCCEEEEEEeCCC
Q psy3751 404 RKFIIADTPGH----EQ---YTRNMITGASTADAVIILIDASK 439 (967)
Q Consensus 404 ~~~~liDtpG~----~~---~~~~~~~~~~~aD~~ilVvda~~ 439 (967)
..+.++||||. .. .....+..++.||++++|||+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 46899999995 22 23456667899999999999974
No 387
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.04 E-value=8.6e-10 Score=97.34 Aligned_cols=130 Identities=22% Similarity=0.243 Sum_probs=89.4
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
++++||.+++|||||++.|-+..-.. . -|.- +++.+.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly----------------------------k---------KTQA-----ve~~d~- 39 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY----------------------------K---------KTQA-----VEFNDK- 39 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh----------------------------c---------ccce-----eeccCc-
Confidence 68999999999999999997621100 0 0110 222221
Q ss_pred EEEeeChh----hHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 406 FIIADTPG----HEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 406 ~~liDtpG----~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
-.||||| |..+....+.....+|++++|-.++++... +.+ .++ ..+.+++|-|++|.|+.+. +
T Consensus 40 -~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~----f~p------~f~-~~~~k~vIgvVTK~DLaed-~ 106 (148)
T COG4917 40 -GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESR----FPP------GFL-DIGVKKVIGVVTKADLAED-A 106 (148)
T ss_pred -cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcccc----CCc------ccc-cccccceEEEEecccccch-H
Confidence 2589999 778888888888999999999999983211 111 111 2345568999999999852 1
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
. .+..+.++.+.|-. ++|.+|+.+..|+++
T Consensus 107 -d----I~~~~~~L~eaGa~--~IF~~s~~d~~gv~~ 136 (148)
T COG4917 107 -D----ISLVKRWLREAGAE--PIFETSAVDNQGVEE 136 (148)
T ss_pred -h----HHHHHHHHHHcCCc--ceEEEeccCcccHHH
Confidence 1 23345567777743 789999999999998
No 388
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.04 E-value=7.7e-10 Score=108.59 Aligned_cols=110 Identities=22% Similarity=0.170 Sum_probs=83.1
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhh--hhccc---cc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSI--MKGTV---RL 113 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~--~~~~~---~~ 113 (967)
.++|++|||+||+++++++.+... .++.++++|+|...++..++++++++. |+++..+..+... ..... ..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~~~l~~~ 78 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQLARFKAK 78 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHHHHHhcc
Confidence 468999999999999999988643 267889999999888888999999999 8777665443321 11100 11
Q ss_pred CCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHh
Q psy3751 114 RKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKA 152 (967)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~ 152 (967)
...++..|...+...+.+.+++.|.+.+++|++.+|...
T Consensus 79 ~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~ 117 (154)
T cd01996 79 VGDPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQEFG 117 (154)
T ss_pred cCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcc
Confidence 234455666666777888899999999999999998854
No 389
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.04 E-value=4.4e-10 Score=122.63 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=96.5
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC---------hhhHHHHHHHHHHhCCcEEEEecchhhhhc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF---------PEVISFRDNCISKLGETLIVRSVEDSIMKG 109 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~---------pet~~~~~~~~~~~gi~i~~~~~~~~~~~~ 109 (967)
+++|+.|||.||+|.++|+++. +.++..+|+...... ++..+.++++|+++|||++++.....|+..
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~----G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~ 77 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQ----GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEE 77 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHC----T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHH
T ss_pred eEEEEccCCHHHHHHHHHHHhh----cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 6889999999999999999998 678888888766542 345788999999999999999998887764
Q ss_pred cc---------ccCCCCcccchh-hcHHHHHHHHHH-cCCcEEEEeccch--hh--Hhhhccccccc-cc-cCCCCCCCC
Q psy3751 110 TV---------RLRKPNTDSRNA-AQSITLLETIKE-FKFDACIGGARRD--EE--KARAKERIFSF-RD-KFGQWNPKS 172 (967)
Q Consensus 110 ~~---------~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~G~R~d--es--~~R~~~~~~~~-~~-~~~~~~~~~ 172 (967)
.. ...+++|-.|+. .|-..+.+.+.+ .|++.++|||=+- .. ..+. .+... |. +...+.+..
T Consensus 78 Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~--~L~r~~D~~KDQSYfL~~ 155 (356)
T PF03054_consen 78 VIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRY--RLLRGADPKKDQSYFLSR 155 (356)
T ss_dssp THHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEE--EEEE-SSTTC--GGGGTT
T ss_pred HHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCce--EEEecCCCCCCceEEEEe
Confidence 42 223445556655 677789999999 9999999999422 11 1111 11111 11 111110000
Q ss_pred CCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 173 QRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 173 ~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
-.++. -...+.||-+|+++||.+.+++.|+|
T Consensus 156 l~~~~-----------L~~~~FPLG~~~K~eVR~iA~~~gl~ 186 (356)
T PF03054_consen 156 LPQEQ-----------LSRLIFPLGELTKEEVREIAREAGLP 186 (356)
T ss_dssp --HHH-----------HCCEE-TCCCS-HHHHHHHHHHCT-T
T ss_pred cCHHH-----------HHhhcCCCCCCCHHHHHHHHHhcCCc
Confidence 00000 12457899999999999999999998
No 390
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.03 E-value=2.2e-09 Score=118.81 Aligned_cols=149 Identities=23% Similarity=0.398 Sum_probs=103.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc-EEEEecchhhhhcccc--cC
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET-LIVRSVEDSIMKGTVR--LR 114 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~-i~~~~~~~~~~~~~~~--~~ 114 (967)
++++|+||||+||+++++++.+.+ +.++.++++|+|.. .+..+.+++.|+++|++ +++......|++.... ..
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---G~eViav~id~Gq~-~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i~p~i~ 81 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---GCEVVCFTADVGQG-IEELEGLEAKAKASGAKQLVVKDLREEFVRDYIFPCLR 81 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---CCeEEEEEEECCCC-hHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhcCHHHH
Confidence 689999999999999999997752 45799999999963 46788899999999997 5666666665543221 11
Q ss_pred CCCc-ccchhhcH--------HHHHHHHHHcCCcEEEEeccc--hhhHhhhccccccccccCCCCCCCCCCccccccccc
Q psy3751 115 KPNT-DSRNAAQS--------ITLLETIKEFKFDACIGGARR--DEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNT 183 (967)
Q Consensus 115 ~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~G~R~--des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 183 (967)
.+.. ..|..|+. ..+.+.+++.|.++++.|++. +|.. |....+.-.. |
T Consensus 82 ~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~-rf~~~~~al~------------p-------- 140 (404)
T PLN00200 82 ANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQV-RFELTFFALN------------P-------- 140 (404)
T ss_pred cCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHH-HHHHHHHHhC------------C--------
Confidence 1122 22222332 446778888999999999986 4332 2211110000 0
Q ss_pred cCCCCCceEEeeCCCCc---HHHHHHHHHHcCCCCC
Q psy3751 184 RVHPGENIRVFPISNWT---ELDIWQYIEREKIILP 216 (967)
Q Consensus 184 ~~~~~~~~~i~Pl~~wt---~~dV~~yi~~~~lp~~ 216 (967)
..-.+.|+.+|. ++|+.+|++++|||+.
T Consensus 141 -----el~ViaPlre~~~~~r~e~~~~A~~~Gipv~ 171 (404)
T PLN00200 141 -----ELKVVAPWREWDIKGREDLIEYAKKHNIPVP 171 (404)
T ss_pred -----CCeeeCchhhcCCCCHHHHHHHHHHcCCCCC
Confidence 124678999985 9999999999999864
No 391
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.00 E-value=3.3e-09 Score=115.19 Aligned_cols=104 Identities=20% Similarity=0.119 Sum_probs=63.7
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
..+..+.|+||+|..+-... .+..||++++|++...+ ..++......+. +. -|+|+||+|+.+..
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~g-----d~iq~~k~gi~E------~a-DIiVVNKaDl~~~~ 210 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAG-----DELQGIKKGIME------LA-DLIVINKADGDNKT 210 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCch-----HHHHHHHhhhhh------hh-heEEeehhcccchh
Confidence 34678999999996522211 35679999999874330 012111111222 22 27889999998643
Q ss_pred HHHHHHHHHHHHHHHHHcCC----ccceEEeccccCCCccccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHF----QNINTIPISALNGDNIISASN 521 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~----~~~~ii~iSa~~g~gi~~l~~ 521 (967)
..+....+++..+..... ...|++++||++|.|++++.+
T Consensus 211 --~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 211 --AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred --HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 234445555555543221 135899999999999999754
No 392
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.00 E-value=6.5e-09 Score=109.33 Aligned_cols=121 Identities=17% Similarity=0.075 Sum_probs=72.9
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....++|+++|.+|+|||||+|+|++..... . + ...+.|........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~--------------------------v-~-----~~~~~T~~~~~~~~ 74 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAA--------------------------T-S-----AFQSETLRVREVSG 74 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcc--------------------------c-C-----CCCCceEEEEEEEE
Confidence 34567899999999999999999999832110 0 0 01123444444455
Q ss_pred ecCCceEEEeeChhhHHH-----H-HH----HHhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcCC--
Q psy3751 400 NTPKRKFIIADTPGHEQY-----T-RN----MITGA--STADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLRI-- 464 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~-----~-~~----~~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~~-- 464 (967)
..++..+++|||||..+. . .. +...+ ...|++++|...+.. .........+..+ ..+|.
T Consensus 75 ~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~------r~~~~d~~llk~I~e~fG~~i 148 (249)
T cd01853 75 TVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMY------RRDYLDLPLLRAITDSFGPSI 148 (249)
T ss_pred EECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCC------CCCHHHHHHHHHHHHHhChhh
Confidence 567788999999995433 1 11 11122 257888888755541 1112222333222 23442
Q ss_pred -CeEEEEEecCCccC
Q psy3751 465 -KHIIIAVNKMDLIN 478 (967)
Q Consensus 465 -~~iivviNK~D~~~ 478 (967)
.++|+|+||+|...
T Consensus 149 ~~~~ivV~T~~d~~~ 163 (249)
T cd01853 149 WRNAIVVLTHAASSP 163 (249)
T ss_pred HhCEEEEEeCCccCC
Confidence 46999999999864
No 393
>KOG0088|consensus
Probab=98.99 E-value=9.9e-10 Score=100.42 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=99.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
-.+|++++|.-=+|||||+-+... ..++...+..+... +....+..+
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~E--nkFn~kHlsTlQAS-------------------------------F~~kk~n~e 58 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVE--NKFNCKHLSTLQAS-------------------------------FQNKKVNVE 58 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHH--hhcchhhHHHHHHH-------------------------------Hhhcccccc
Confidence 458899999999999999988875 12222222111110 000112222
Q ss_pred --CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCC-CeEEEEEecCCccCc
Q psy3751 403 --KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLINY 479 (967)
Q Consensus 403 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~-~~iivviNK~D~~~~ 479 (967)
...+.||||+|+++|-.-=.-.++.+|+++||.|.++.. .++.-......+-..+|. --+++|.||+|+.+.
T Consensus 59 d~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrd-----SFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 59 DCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRD-----SFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred cceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchH-----HHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh
Confidence 346789999999999766555678999999999999811 222222233334444564 237889999999754
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
.+. ..++...+.+..|. .++.+||+.+.||.++.+
T Consensus 134 R~V----t~qeAe~YAesvGA---~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 134 RQV----TRQEAEAYAESVGA---LYMETSAKDNVGISELFE 168 (218)
T ss_pred hhh----hHHHHHHHHHhhch---hheecccccccCHHHHHH
Confidence 432 33444556666665 679999999999999643
No 394
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.98 E-value=3.3e-09 Score=94.51 Aligned_cols=95 Identities=21% Similarity=0.338 Sum_probs=80.4
Q ss_pred CcccccCCCCccccceeEEEEEEecc--ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEE
Q psy3751 628 GNMLVSPFKRPVSLRSINANLCWLSE--ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTI 705 (967)
Q Consensus 628 G~vl~~~~~~~~~~~~f~a~i~~~~~--~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l 705 (967)
|++++.++ ...+++.|++++.++.. .++++++++++|+||..+.|+|..+ +.+.+.+|+.+.++|
T Consensus 1 G~vl~~~~-~~~~~~~~~~~i~~l~~~~~~l~~~~~v~~~~Gt~~v~~ri~ll------------~~~~~~pg~~~~a~l 67 (97)
T cd04094 1 GDVLADPG-SLLPTRRLDVRLTVLLSAPRPLKHRQRVHLHHGTSEVLARVVLL------------DRDELAPGEEALAQL 67 (97)
T ss_pred CCEEecCC-CcCCceEEEEEEEEECCCCccCCCCCeEEEEeccceEEEEEEeC------------CccccCCCCEEEEEE
Confidence 78888864 34557999999998876 5899999999999999999998854 235688999999999
Q ss_pred eecCceeeccccCccCCccceeecccccccceEEEE
Q psy3751 706 NIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYI 741 (967)
Q Consensus 706 ~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~ 741 (967)
+|++|+++.. ..||+||+.+..+|+|.+.|
T Consensus 68 ~l~~pl~~~~------gdrfilR~~~~~~tiggG~V 97 (97)
T cd04094 68 RLEEPLVALR------GDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EECCcEeecC------CCeEEEeeCCCCeEEEeEEC
Confidence 9999999988 56999999777788887753
No 395
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.97 E-value=6.5e-09 Score=107.15 Aligned_cols=153 Identities=17% Similarity=0.215 Sum_probs=95.9
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee-cCCc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN-TPKR 404 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~ 404 (967)
||.++|..+|||||..+.+..... -.+...-|.|+++....+. .+..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~--------------------------------p~dT~~L~~T~~ve~~~v~~~~~~ 48 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS--------------------------------PRDTLRLEPTIDVEKSHVRFLSFL 48 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS-----------------------------------GGGGGG-----SEEEEEEECTTSC
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC--------------------------------chhccccCCcCCceEEEEecCCCc
Confidence 689999999999999999886211 0122334778887777775 3456
Q ss_pred eEEEeeChhhHHHHHHH-----HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCC-CeEEEEEecCCccC
Q psy3751 405 KFIIADTPGHEQYTRNM-----ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLIN 478 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~-----~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~-~~iivviNK~D~~~ 478 (967)
.+++||+||+.++..+. ..-.+.++++|+|+|+...++. .......+.+..+...+. -++.|.+.|||++.
T Consensus 49 ~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~---~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 49 PLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYD---EDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCH---HHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred EEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHH---HHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 99999999987766552 3335889999999999952221 112223333333333332 34888899999985
Q ss_pred c--CHHHHHHHHHHHHHHHHHcCCccceEEeccccCC
Q psy3751 479 Y--NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNG 513 (967)
Q Consensus 479 ~--~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g 513 (967)
. .++.++.+.+.+.+.+...+...+.++.+|.+..
T Consensus 126 ~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~ 162 (232)
T PF04670_consen 126 EDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDE 162 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTST
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCc
Confidence 3 3456677777788888777766678899998764
No 396
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.97 E-value=4e-09 Score=122.21 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=102.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC-hh-hHHHHHHHHHHhC----CcEEEEecchhhhhccc
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF-PE-VISFRDNCISKLG----ETLIVRSVEDSIMKGTV 111 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~-pe-t~~~~~~~~~~~g----i~i~~~~~~~~~~~~~~ 111 (967)
+++++.+|||+||+|+++++.+. +.++.++|+|.|... .. ..+.++.++++|+ ++++++.........
T Consensus 178 gk~lvllSGGiDS~va~~~~~kr----G~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~~~~~~i-- 251 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRR----GSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFEPVVGEI-- 251 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHc----CCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecHHHHHHH--
Confidence 47789999999999999999886 668999999998653 22 4567777777776 446666544332211
Q ss_pred ccCCCCcccch-hhcHHHH---HHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCC
Q psy3751 112 RLRKPNTDSRN-AAQSITL---LETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHP 187 (967)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 187 (967)
....++..|+ .+|+..+ ...|.+.|.++++||++.+|-+.-...++......
T Consensus 252 -~~~~~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~~~~----------------------- 307 (482)
T PRK01269 252 -LEKVDDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLIDNV----------------------- 307 (482)
T ss_pred -HhcCCCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhhhhh-----------------------
Confidence 1122356666 5666555 66677899999999999999654333332221110
Q ss_pred CCceEEeeCCCCcHHHHHHHHHHcCC
Q psy3751 188 GENIRVFPISNWTELDIWQYIEREKI 213 (967)
Q Consensus 188 ~~~~~i~Pl~~wt~~dV~~yi~~~~l 213 (967)
.....++||+.|+++||..|.+..|+
T Consensus 308 ~~~~v~rPLi~~dK~EIi~~a~~ig~ 333 (482)
T PRK01269 308 TDTLILRPLIAMDKEDIIDLAREIGT 333 (482)
T ss_pred cCCceecCCcCCCHHHHHHHHHHhCC
Confidence 11345699999999999999999997
No 397
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.95 E-value=5.8e-09 Score=117.69 Aligned_cols=145 Identities=14% Similarity=0.048 Sum_probs=99.0
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeC-CCCChhhHHHHHHHHHHhC-----CcEEEEecchhhhhccc
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDT-GHNFPEVISFRDNCISKLG-----ETLIVRSVEDSIMKGTV 111 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idt-g~~~pet~~~~~~~~~~~g-----i~i~~~~~~~~~~~~~~ 111 (967)
+++++++|||.||+|+++++.+. +.++.++|+++ .+..+...+.+.+++++++ ++++++....... .+.
T Consensus 177 gkvvvllSGGiDS~vaa~l~~k~----G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~~~~-~i~ 251 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAMKR----GVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTEIQE-EIK 251 (394)
T ss_pred CCEEEEECCChhHHHHHHHHHHC----CCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECHHHHH-HHh
Confidence 57789999999999999999875 66788999976 3444556677788887774 8999887765431 111
Q ss_pred ccCCCCcccchhhcHHH---HHHHHHHcCCcEEEEeccchhhHh--hhccccccccccCCCCCCCCCCccccccccccCC
Q psy3751 112 RLRKPNTDSRNAAQSIT---LLETIKEFKFDACIGGARRDEEKA--RAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVH 186 (967)
Q Consensus 112 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~R~des~~--R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 186 (967)
. ..+....|..||+.. ....+.+.|.++++||++.+|-.. +..+..+. .
T Consensus 252 ~-~~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~~i~--~----------------------- 305 (394)
T PRK01565 252 K-KVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMYAIN--A----------------------- 305 (394)
T ss_pred h-cCCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHHHh--h-----------------------
Confidence 1 122222233344422 355567789999999999888642 22221111 0
Q ss_pred CCCceEEeeCCCCcHHHHHHHHHHcCC
Q psy3751 187 PGENIRVFPISNWTELDIWQYIEREKI 213 (967)
Q Consensus 187 ~~~~~~i~Pl~~wt~~dV~~yi~~~~l 213 (967)
......++||+.|++.||.++.++.|+
T Consensus 306 ~~~~~V~rPLig~~K~EI~~lAr~iG~ 332 (394)
T PRK01565 306 VTNLPVLRPLIGMDKEEIIEIAKEIGT 332 (394)
T ss_pred ccCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 011356899999999999999999995
No 398
>PTZ00099 rab6; Provisional
Probab=98.94 E-value=3e-09 Score=106.46 Aligned_cols=104 Identities=19% Similarity=0.152 Sum_probs=69.1
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHHHcC-CCeEEEEEecCCccCcC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAHLLR-IKHIIIAVNKMDLINYN 480 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~~~~-~~~iivviNK~D~~~~~ 480 (967)
..++.||||||+++|...+...++.||++|+|+|+++.. .+ .....++. +....+ ..++|+|.||+|+.+..
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~-----sf-~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 101 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ-----SF-ENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 101 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 356789999999999887777889999999999998721 11 11222222 222222 23489999999996432
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.. .++...+.+.++. .++++||++|.|++++
T Consensus 102 ~v~----~~e~~~~~~~~~~---~~~e~SAk~g~nV~~l 133 (176)
T PTZ00099 102 KVT----YEEGMQKAQEYNT---MFHETSAKAGHNIKVL 133 (176)
T ss_pred CCC----HHHHHHHHHHcCC---EEEEEECCCCCCHHHH
Confidence 111 1122334444444 7899999999999985
No 399
>KOG1532|consensus
Probab=98.94 E-value=2.9e-09 Score=107.01 Aligned_cols=195 Identities=12% Similarity=0.215 Sum_probs=102.5
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCCh-HHHHHHhHHHhhcc-----cCCCceeeeeccCCchhhhccceeEeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFI-DQLDAVSRTKYKRV-----MSGHNIDLSLLTDGLESEREQGITIDVA 395 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~~e~~~g~Ti~~~ 395 (967)
+.+..|.++|..||||||++.+|......-.. ...-.+.+...... .-++..+|..+|..+.--...||+....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 45677999999999999999999864311000 00000000000000 0112222333344444444455543322
Q ss_pred eeeee-----------cCCceEEEeeChhhH-HHH--------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHH
Q psy3751 396 YRYFN-----------TPKRKFIIADTPGHE-QYT--------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRH 455 (967)
Q Consensus 396 ~~~~~-----------~~~~~~~liDtpG~~-~~~--------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~ 455 (967)
..... .+..++.+|||||+- -|. ...+. ....-++++|||..... +...++......
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~la-ss~ptvv~YvvDt~rs~--~p~tFMSNMlYA 173 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLA-SSFPTVVVYVVDTPRST--SPTTFMSNMLYA 173 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHh-hcCCeEEEEEecCCcCC--CchhHHHHHHHH
Confidence 21111 123568999999943 222 22222 24567889999987611 112344444455
Q ss_pred HHHHHHcCCCeEEEEEecCCccCcC--------HHHHHHHHHH-----HHHHHHHcC------CccceEEeccccCCCcc
Q psy3751 456 SIIAHLLRIKHIIIAVNKMDLINYN--------QIFYKRIVYA-----YKKFAEDIH------FQNINTIPISALNGDNI 516 (967)
Q Consensus 456 ~~~~~~~~~~~iivviNK~D~~~~~--------~~~~~~i~~~-----~~~~~~~~~------~~~~~ii~iSa~~g~gi 516 (967)
..++..-.+| +|||+||.|+.+.. -+.|++..++ +..+...+. +.+...+.+|+.+|.|.
T Consensus 174 cSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 174 CSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 5566666777 99999999998631 1222222221 001111110 13568899999999999
Q ss_pred cccc
Q psy3751 517 ISAS 520 (967)
Q Consensus 517 ~~l~ 520 (967)
+++.
T Consensus 253 ddf~ 256 (366)
T KOG1532|consen 253 DDFF 256 (366)
T ss_pred HHHH
Confidence 9865
No 400
>KOG0081|consensus
Probab=98.94 E-value=6.6e-10 Score=101.61 Aligned_cols=152 Identities=19% Similarity=0.242 Sum_probs=99.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP- 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 402 (967)
.+++..+|..|+||||++-+.+. +.|.-.++ ..+.||+....+-++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD------------------------~~F~~qFI---------sTVGIDFreKrvvY~s 55 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTD------------------------GKFNTQFI---------STVGIDFREKRVVYNS 55 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecC------------------------CcccceeE---------EEeecccccceEEEec
Confidence 45678899999999999877664 12221111 112233322222111
Q ss_pred --------C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCC-CCCCCCCchhhHHHHHHHHHHcCCCeEEEEE
Q psy3751 403 --------K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKI-KFNPSVNLLTQTKRHSIIAHLLRIKHIIIAV 471 (967)
Q Consensus 403 --------~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~-~~~~~~g~~~~t~~~~~~~~~~~~~~iivvi 471 (967)
+ ..+.+|||+|+++|..-+-...+.|=+.+|++|.+.. .|-.-..|..|.+.|.. ...|.+|++.
T Consensus 56 ~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY----cE~PDivlcG 131 (219)
T KOG0081|consen 56 SGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY----CENPDIVLCG 131 (219)
T ss_pred cCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc----cCCCCEEEEc
Confidence 1 2467999999999999988888999999999999871 12111223333333321 2347799999
Q ss_pred ecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 472 NKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 472 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
||.|+.+.... ..++...+..++|+ |+|.+||-+|.|+.+-
T Consensus 132 NK~DL~~~R~V----s~~qa~~La~kygl---PYfETSA~tg~Nv~ka 172 (219)
T KOG0081|consen 132 NKADLEDQRVV----SEDQAAALADKYGL---PYFETSACTGTNVEKA 172 (219)
T ss_pred Cccchhhhhhh----hHHHHHHHHHHhCC---CeeeeccccCcCHHHH
Confidence 99999864332 23345567788887 9999999999999874
No 401
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.94 E-value=1.2e-08 Score=111.52 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=54.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
++|+++|.||+|||||+|+|++....+ +. ..+.|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v-----------~n----------------------ypftTi~p~~G~~~v~d~ 49 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA-----------AN----------------------YPFCTIEPNVGVVPVPDP 49 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee-----------cc----------------------cccccccceEEEEEeccc
Confidence 689999999999999999999733111 00 12333333222222211
Q ss_pred ----------------ceEEEeeChhh-----H--HHHHHHHhhcccCCEEEEEEeCCC
Q psy3751 404 ----------------RKFIIADTPGH-----E--QYTRNMITGASTADAVIILIDASK 439 (967)
Q Consensus 404 ----------------~~~~liDtpG~-----~--~~~~~~~~~~~~aD~~ilVvda~~ 439 (967)
.++.++|+||. . ......+..++.+|++++|||+..
T Consensus 50 r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 50 RLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred cchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 35899999992 2 244556777899999999999964
No 402
>PRK13768 GTPase; Provisional
Probab=98.93 E-value=6.2e-09 Score=110.41 Aligned_cols=108 Identities=21% Similarity=0.320 Sum_probs=65.0
Q ss_pred CceEEEeeChhhHHHH------HHHHhhccc--CCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH-----HcCCCeEEE
Q psy3751 403 KRKFIIADTPGHEQYT------RNMITGAST--ADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH-----LLRIKHIII 469 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~------~~~~~~~~~--aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~-----~~~~~~iiv 469 (967)
+..+.++||||+.++. ....+.+.. ++++++|+|+.. +..+...+....+. ..+.+ +|+
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~-------~~~~~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVL-------AKTPSDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHH-------hCCHHHHHHHHHHHHHHHHHcCCC-EEE
Confidence 3479999999965432 223333333 899999999977 44343333332221 45666 888
Q ss_pred EEecCCccCcCHH-HHHHHHHH---------------------HHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 470 AVNKMDLINYNQI-FYKRIVYA---------------------YKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 470 viNK~D~~~~~~~-~~~~i~~~---------------------~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+||+|+.+..+. ......+. +.+.+++++. ..+++++|++++.|++++
T Consensus 168 v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~-~~~vi~iSa~~~~gl~~L 238 (253)
T PRK13768 168 VLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL-PVRVIPVSAKTGEGFDEL 238 (253)
T ss_pred EEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC-CCcEEEEECCCCcCHHHH
Confidence 9999999864321 11111111 1112333342 347899999999999983
No 403
>KOG0395|consensus
Probab=98.93 E-value=4e-09 Score=106.73 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=99.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEe-eceeeeecC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITID-VAYRYFNTP 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~ 402 (967)
..+|+++|..|+|||+|+-++++.. | .++.. -|++ .-...+..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~------------------------f---------~~~y~--ptied~y~k~~~v~ 47 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR------------------------F---------VEDYD--PTIEDSYRKELTVD 47 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc------------------------c---------ccccC--CCccccceEEEEEC
Confidence 4689999999999999999988611 1 11111 1221 111223333
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
+ ..+.|+||+|.++|...--..+..+|+-++|.+.++ ..| ....+.++++...+....-|+|+|.||+|+...
T Consensus 48 ~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF----~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 48 GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSF----EEAKQLREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred CEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHH----HHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 3 456699999988888887788899999999999998 222 333445555522222222349999999999864
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+... ++-+.+...++. +++.+||+...|++++
T Consensus 124 R~V~~----eeg~~la~~~~~---~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 124 RQVSE----EEGKALARSWGC---AFIETSAKLNYNVDEV 156 (196)
T ss_pred cccCH----HHHHHHHHhcCC---cEEEeeccCCcCHHHH
Confidence 33222 223445556665 7999999999999985
No 404
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=8.7e-09 Score=110.30 Aligned_cols=167 Identities=16% Similarity=0.151 Sum_probs=113.3
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCC-------ChhhHHHHHHHHHHhCCcEEEEecchhhhhcc
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHN-------FPEVISFRDNCISKLGETLIVRSVEDSIMKGT 110 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~-------~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~ 110 (967)
.+++|++|||.||+|.+.|+.+. +.++..+|+....+ .++.++.++++|+.+|||++++.....+|...
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~Q----GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V 79 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQ----GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKV 79 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHc----CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHH
Confidence 57899999999999999999998 66888888865552 34566789999999999999999888777522
Q ss_pred ---------cccCCCCcccch-hhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcccccc
Q psy3751 111 ---------VRLRKPNTDSRN-AAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNL 180 (967)
Q Consensus 111 ---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~ 180 (967)
....+.+|-.|+ ..|-..+.+.+++.|.+.++|||=.-.........+.+..+.+ .. ..+-+
T Consensus 80 ~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~------KD--QsYfL 151 (356)
T COG0482 80 FEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLN------KD--QSYFL 151 (356)
T ss_pred HHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcc------cc--hhhee
Confidence 123355677773 4778889999999999999999964322211110111111100 00 00111
Q ss_pred ccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCC
Q psy3751 181 YNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPS 217 (967)
Q Consensus 181 ~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~ 217 (967)
+. -....-...+.||-++++.+|...+.+.++|...
T Consensus 152 ~~-~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~ 187 (356)
T COG0482 152 YA-LSQEQLERLLFPLGDLEKLEVRPIAAEKGLPTAK 187 (356)
T ss_pred cc-cCHHHHhhccccCCCCCHHHHHHHHHHcCCCccC
Confidence 10 0011112347899999999999999999997653
No 405
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.5e-08 Score=110.42 Aligned_cols=148 Identities=21% Similarity=0.197 Sum_probs=108.2
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
....+++-|+++|++|.|||||+..|... +. ..+-.+...-||+
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr-----------~t-------------------k~ti~~i~GPiTv------ 107 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRR-----------FT-------------------KQTIDEIRGPITV------ 107 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHH-----------HH-------------------HhhhhccCCceEE------
Confidence 34567888999999999999999999851 11 1111222233444
Q ss_pred eecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC
Q psy3751 399 FNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 399 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~ 478 (967)
+....++++|+.+| +-+..|+.-+..||+++|+||++- |+...|.+.+.++...|.|+++-|++..|+..
T Consensus 108 vsgK~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnf-------GfEMETmEFLnil~~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 108 VSGKTRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNF-------GFEMETMEFLNILISHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred eecceeEEEEEeCh---HHHHHHHhHHHhhheeEEEecccc-------CceehHHHHHHHHhhcCCCceEEEEeeccccc
Confidence 44456899999999 446778888899999999999987 89899999999999999999999999999987
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCC
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNG 513 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g 513 (967)
. +..+..+++.++.-+-.--+..+.+|.+|....
T Consensus 178 ~-~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 178 N-PSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred C-hHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 4 444555555444322221234557788887543
No 406
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.92 E-value=1.2e-08 Score=113.04 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHcCC---CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc
Q psy3751 20 DWLESEAIHIMREVSAECN---NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET 96 (967)
Q Consensus 20 ~~~~~~a~~~i~~~~~~~~---~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~ 96 (967)
+...++..+.+.++....+ .++|++||||||+++++++.+.+ +.++.++++|+|+..+...+.++++++.+|++
T Consensus 39 ~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~~---gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd 115 (343)
T TIGR03573 39 DEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKL---GLNPLLVTVDPGWNTELGVKNLNNLIKKLGFD 115 (343)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHHh---CCceEEEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence 3344455555554444333 38899999999999999986543 44677899999998777888999999999999
Q ss_pred EEEEecchhhhhc----ccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhh
Q psy3751 97 LIVRSVEDSIMKG----TVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEE 150 (967)
Q Consensus 97 i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des 150 (967)
++++.++...... .......+|..|.......+.+.|+++|..++++|++.+|-
T Consensus 116 ~~~i~~d~~~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~ 173 (343)
T TIGR03573 116 LHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIAEE 173 (343)
T ss_pred eEEEeCCHHHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHh
Confidence 9999876432211 11122335666766777788999999999999999999974
No 407
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.90 E-value=1.1e-08 Score=89.54 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=71.7
Q ss_pred CCCCceeeEEEeecCCCcc--CC--CceEEEEEEEeeeecCCCEEEEecC-------C-----cEEEEEEEEeCccccce
Q psy3751 545 DKKPLRFPVQLVARHCGHI--SK--DFRGYMGRIESGIIKKNDCLIVEPS-------G-----KKATIKDIQMLNKSLDM 608 (967)
Q Consensus 545 ~~~~~~~~i~~v~~~~~~~--~~--~~~v~~G~v~~G~l~~g~~v~i~p~-------~-----~~~~V~~i~~~~~~v~~ 608 (967)
.++|++|+|.++|.+...| .+ .+.|+.|+|.+|.|++||+|.|.|. + ...+|.||+++++.+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 3579999999999977222 11 1279999999999999999999976 2 35789999999999999
Q ss_pred eecCCeEEEEEc-----cccCCCCCcccccC
Q psy3751 609 AITGQSVTLIIK-----EYLDISRGNMLVSP 634 (967)
Q Consensus 609 a~~G~~v~l~l~-----~~~~i~~G~vl~~~ 634 (967)
|.||+.+++..+ ...|.-+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999543 24577778887754
No 408
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.89 E-value=1.9e-08 Score=112.97 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=27.5
Q ss_pred ceEEEeeChhh-------HHHHHHHHhhcccCCEEEEEEeCC
Q psy3751 404 RKFIIADTPGH-------EQYTRNMITGASTADAVIILIDAS 438 (967)
Q Consensus 404 ~~~~liDtpG~-------~~~~~~~~~~~~~aD~~ilVvda~ 438 (967)
..+.++||||. +......+..++.||++++|||+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 45889999993 123445667789999999999997
No 409
>PTZ00258 GTP-binding protein; Provisional
Probab=98.89 E-value=2.2e-08 Score=110.85 Aligned_cols=85 Identities=20% Similarity=0.172 Sum_probs=57.1
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+|||.||+|||||+|+|++....+ + ...+.|++.....+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v-----------~----------------------n~pftTi~p~~g~v~~ 65 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPA-----------E----------------------NFPFCTIDPNTARVNV 65 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccc-----------c----------------------CCCCCcccceEEEEec
Confidence 456789999999999999999998632111 0 0123344333332322
Q ss_pred C-----------------CceEEEeeChhhH-------HHHHHHHhhcccCCEEEEEEeCCC
Q psy3751 402 P-----------------KRKFIIADTPGHE-------QYTRNMITGASTADAVIILIDASK 439 (967)
Q Consensus 402 ~-----------------~~~~~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~ 439 (967)
. ..++.++||||.. ......+..++.+|++++|||+..
T Consensus 66 ~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~ 127 (390)
T PTZ00258 66 PDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFE 127 (390)
T ss_pred ccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 2 2358999999922 244566777899999999999853
No 410
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.89 E-value=1.7e-08 Score=87.06 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=68.5
Q ss_pred eEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEeCccccceeecCCeEEEEEccccCCCCC
Q psy3751 552 PVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG---KKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRG 628 (967)
Q Consensus 552 ~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~---~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~G 628 (967)
-|.++|+....+ +++.|+|.+|.+++|+.+.+.|++ .+.+|++|+.+++++++|.+|+.|+|.+++..++++|
T Consensus 4 ~V~~vf~~~~~g----~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~d~~~G 79 (84)
T cd03692 4 EVRAVFKISKVG----NIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFNDIKVG 79 (84)
T ss_pred EEEEEEECCCCc----EEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcccCCCC
Confidence 467788776544 789999999999999999999999 6789999999999999999999999999886699999
Q ss_pred ccc
Q psy3751 629 NML 631 (967)
Q Consensus 629 ~vl 631 (967)
|+|
T Consensus 80 dvi 82 (84)
T cd03692 80 DII 82 (84)
T ss_pred CEE
Confidence 987
No 411
>KOG0083|consensus
Probab=98.89 E-value=6.6e-10 Score=98.38 Aligned_cols=115 Identities=23% Similarity=0.261 Sum_probs=79.5
Q ss_pred EeeceeeeecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHHHHHHcCCCeEE
Q psy3751 392 IDVAYRYFNTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSIIAHLLRIKHII 468 (967)
Q Consensus 392 i~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~~~~~~~~~~ii 468 (967)
||..-..+..++ .++.+|||+|+++|..-+....+.||..+|+.|..+ ..|+.--.+..+.+|....+ +. +.
T Consensus 33 id~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~----v~-l~ 107 (192)
T KOG0083|consen 33 IDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEA----VA-LM 107 (192)
T ss_pred eccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhh----Hh-Hh
Confidence 333333344444 467899999999999999999999999999999887 34443334445555544333 22 66
Q ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 469 IAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 469 vviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
++.||+|+..+.-. -.++=+.+.+.+++ ||+.+||++|.|++-
T Consensus 108 llgnk~d~a~er~v----~~ddg~kla~~y~i---pfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 108 LLGNKCDLAHERAV----KRDDGEKLAEAYGI---PFMETSAKTGFNVDL 150 (192)
T ss_pred hhccccccchhhcc----ccchHHHHHHHHCC---CceeccccccccHhH
Confidence 78999999653211 11223456667776 999999999999985
No 412
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.88 E-value=2.2e-08 Score=108.09 Aligned_cols=163 Identities=14% Similarity=0.167 Sum_probs=93.0
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccc---eeEeece
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG---ITIDVAY 396 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g---~Ti~~~~ 396 (967)
.....+.|+++|++++|||||+|+|....-.-+-.. ...+.. ..|.++. ...| +|.+..+
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~--~~~k~R--------------a~DELpq-s~~GktItTTePkf 75 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISN--EYDKER--------------AQDELPQ-SAAGKTIMTTEPKF 75 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccc--hhHHhH--------------HHhccCc-CCCCCCcccCCCcc
Confidence 345778999999999999999999998521110000 000000 0111111 1135 4555555
Q ss_pred ---eeeec-----CCceEEEeeChhhHH-------------------------HHHH----HHhhcc-cCCEEEEEE-eC
Q psy3751 397 ---RYFNT-----PKRKFIIADTPGHEQ-------------------------YTRN----MITGAS-TADAVIILI-DA 437 (967)
Q Consensus 397 ---~~~~~-----~~~~~~liDtpG~~~-------------------------~~~~----~~~~~~-~aD~~ilVv-da 437 (967)
..++. -..++.++||+|..+ |... +...+. .+|++|+|. |+
T Consensus 76 vP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDg 155 (492)
T TIGR02836 76 VPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDG 155 (492)
T ss_pred ccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCC
Confidence 22222 136899999999221 2222 233345 899999999 87
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc-CcCHHHHHHHHHHHHHHHHHcCCccceEEecccc
Q psy3751 438 SKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI-NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISAL 511 (967)
Q Consensus 438 ~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~ 511 (967)
+-..... .+......+.+..++..+.| +|+++||.|-. +... ++. +.+.++++ +|++++|+.
T Consensus 156 si~dI~R-e~y~~aEe~~i~eLk~~~kP-fiivlN~~dp~~~et~----~l~---~~l~eky~---vpvl~v~c~ 218 (492)
T TIGR02836 156 TITDIPR-EDYVEAEERVIEELKELNKP-FIILLNSTHPYHPETE----ALR---QELEEKYD---VPVLAMDVE 218 (492)
T ss_pred Ccccccc-ccchHHHHHHHHHHHhcCCC-EEEEEECcCCCCchhH----HHH---HHHHHHhC---CceEEEEHH
Confidence 5211110 14455566777788888887 99999999943 2211 122 22334444 478888764
No 413
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.87 E-value=4.6e-09 Score=108.41 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=56.1
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
+..+.|++|.|.-.. ........+..+.|+|+.. +...+.. . ....+.+ .++++||+|+.+....
T Consensus 102 ~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~-------~d~~~~~-~---~~~~~~a-~iiv~NK~Dl~~~~~~ 166 (207)
T TIGR00073 102 DIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTE-------GDDKPLK-Y---PGMFKEA-DLIVINKADLAEAVGF 166 (207)
T ss_pred CCCEEEEecCCCcCC---CcccccccCeEEEEEecCc-------ccchhhh-h---HhHHhhC-CEEEEEHHHccccchh
Confidence 457889999982100 0111123466678889876 3222111 1 1223334 6889999999864332
Q ss_pred HHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
...+..+.++ +.+ ...+++++||++|.|+.++
T Consensus 167 ~~~~~~~~l~----~~~-~~~~i~~~Sa~~g~gv~~l 198 (207)
T TIGR00073 167 DVEKMKADAK----KIN-PEAEIILMSLKTGEGLDEW 198 (207)
T ss_pred hHHHHHHHHH----HhC-CCCCEEEEECCCCCCHHHH
Confidence 2333333333 332 2468999999999999984
No 414
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.87 E-value=1.7e-08 Score=91.38 Aligned_cols=83 Identities=27% Similarity=0.269 Sum_probs=67.1
Q ss_pred cEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcccccCCCCcc
Q psy3751 40 PVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTD 119 (967)
Q Consensus 40 i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~ 119 (967)
++|++|||+||+++++++.+. +.++.++|+|++... ..+..++++++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~--------------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL----GYQVIAVTVDHGISP--RLEDAKEIAKE--------------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh----CCCEEEEEEcCCCcc--cHHHHHHHHHH---------------------------
Confidence 579999999999999999997 337999999999874 23344444444
Q ss_pred cchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccc
Q psy3751 120 SRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIF 159 (967)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~ 159 (967)
.++..+.+.+++.|.+.+++||+.||..+...++..
T Consensus 48 ----~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~~~~~~ 83 (103)
T cd01986 48 ----AREEAAKRIAKEKGAETIATGTRRDDVANRALGLTA 83 (103)
T ss_pred ----HHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHH
Confidence 677788999999999999999999999887765433
No 415
>KOG0090|consensus
Probab=98.84 E-value=1.2e-08 Score=99.32 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=77.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
..|.++|..|||||+|+-+|+...- +..-.++......+.+++.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~------------------------------------~~TvtSiepn~a~~r~gs~ 82 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH------------------------------------RGTVTSIEPNEATYRLGSE 82 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc------------------------------------cCeeeeeccceeeEeecCc
Confidence 4599999999999999999986210 0011234444455667777
Q ss_pred eEEEeeChhhHHHHHHHHhhcc---cCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-H-HHH---cCCCeEEEEEecCCc
Q psy3751 405 KFIIADTPGHEQYTRNMITGAS---TADAVIILIDASKIKFNPSVNLLTQTKRHSI-I-AHL---LRIKHIIIAVNKMDL 476 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~---~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~-~~~---~~~~~iivviNK~D~ 476 (967)
..+++|.|||.+........+. .+-++|||||+.. |..+. ...-|.+. + ... .+.++++++.||-|+
T Consensus 83 ~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~--f~k~v---rdvaefLydil~~~~~~~~~~~vLIaCNKqDl 157 (238)
T KOG0090|consen 83 NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSAT--FLKNV---RDVAEFLYDILLDSRVKKNKPPVLIACNKQDL 157 (238)
T ss_pred ceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccc--cchhh---HHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence 7999999999998877777665 7999999999986 21111 11222221 1 111 344679999999998
Q ss_pred cCcC
Q psy3751 477 INYN 480 (967)
Q Consensus 477 ~~~~ 480 (967)
.-+.
T Consensus 158 ~tAk 161 (238)
T KOG0090|consen 158 FTAK 161 (238)
T ss_pred hhcC
Confidence 7643
No 416
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.83 E-value=2.4e-08 Score=105.88 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=53.1
Q ss_pred EEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC---
Q psy3751 327 FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK--- 403 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--- 403 (967)
|+|+|.||+|||||+|+|++....+ ....+.|++.....+...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~---------------------------------~n~pftTi~p~~g~v~v~d~r~ 47 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA---------------------------------ANYPFCTIEPNVGIVPVPDERL 47 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc---------------------------------ccccccchhceeeeEEeccchh
Confidence 5899999999999999999732211 0112334433332222222
Q ss_pred --------------ceEEEeeChhh-------HHHHHHHHhhcccCCEEEEEEeCCC
Q psy3751 404 --------------RKFIIADTPGH-------EQYTRNMITGASTADAVIILIDASK 439 (967)
Q Consensus 404 --------------~~~~liDtpG~-------~~~~~~~~~~~~~aD~~ilVvda~~ 439 (967)
.++.++|+||. +......+..++.+|++++|||+..
T Consensus 48 ~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 48 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred hhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 25899999992 2344456677899999999999853
No 417
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.83 E-value=2.1e-09 Score=112.37 Aligned_cols=110 Identities=20% Similarity=0.333 Sum_probs=53.4
Q ss_pred eEEEeeChhhHHH------HHHHHhhcc--cCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 405 KFIIADTPGHEQY------TRNMITGAS--TADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 405 ~~~liDtpG~~~~------~~~~~~~~~--~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
.+.++||||+.++ ....+..+. ..=++++++|+.... ............+.....++.| .|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~--~~~~f~s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCS--DPSKFVSSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-S--SHHHHHHHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEeccccc--ChhhHHHHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 7999999995543 344444444 345788999987511 0001111112222223346887 7888999999
Q ss_pred cCcCHH----------H--------HHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 477 INYNQI----------F--------YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 477 ~~~~~~----------~--------~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.+...+ . +....+.+..++..++. ...++|+|+.+++|+.+
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~-~~~f~pls~~~~~~~~~ 227 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL-VIRFIPLSSKDGEGMEE 227 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS-S---EE-BTTTTTTHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC-CceEEEEECCChHHHHH
Confidence 862111 0 12222333333433443 12799999999999998
No 418
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.82 E-value=4e-08 Score=104.38 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=67.7
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.+.++|+++|.+|+|||||+|+|++...... ..+. +.|..........
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~v---------------------------s~f~-----s~t~~~~~~~~~~ 83 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATV---------------------------SAFQ-----SEGLRPMMVSRTR 83 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccc---------------------------cCCC-----CcceeEEEEEEEE
Confidence 3568899999999999999999997322110 0000 0111111122334
Q ss_pred CCceEEEeeChhhHHH--HH-HHHhhc------ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH-HHHcCC---CeEE
Q psy3751 402 PKRKFIIADTPGHEQY--TR-NMITGA------STADAVIILIDASKIKFNPSVNLLTQTKRHSII-AHLLRI---KHII 468 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~--~~-~~~~~~------~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~-~~~~~~---~~ii 468 (967)
++.++++|||||..+. .. .....+ ...|++++|...+.. ......+..+.. ...+|- .++|
T Consensus 84 ~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~------R~~~~DkqlLk~Iqe~FG~~iw~~~I 157 (313)
T TIGR00991 84 AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY------RVDTLDGQVIRAITDSFGKDIWRKSL 157 (313)
T ss_pred CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc------cCCHHHHHHHHHHHHHhhhhhhccEE
Confidence 6789999999994432 11 111111 268999999654431 111222222322 223342 5699
Q ss_pred EEEecCCccC
Q psy3751 469 IAVNKMDLIN 478 (967)
Q Consensus 469 vviNK~D~~~ 478 (967)
|++|+.|...
T Consensus 158 VVfTh~d~~~ 167 (313)
T TIGR00991 158 VVLTHAQFSP 167 (313)
T ss_pred EEEECCccCC
Confidence 9999999774
No 419
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.81 E-value=1.1e-08 Score=104.32 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=89.1
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchh-------hhhcc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDS-------IMKGT 110 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~-------~~~~~ 110 (967)
+.+|.||||.||+++++++.+. +.++.++++|.|...+..++.++++++.+|+ +++++..+.. +....
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~----~~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~ 76 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE----GYEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSALTDDS 76 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-----SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHHTT
T ss_pred CEEEEeCCCHHHHHHHHHHHHc----CCeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCcccCCC
Confidence 4689999999999999999988 4579999999999877788999999999999 9988876621 11110
Q ss_pred cc--c---C-CCCcccchhhcHHHH----HHHHHHcCCcEEEEeccchhhHhhhc--cccccccccCCCCCCCCCCcccc
Q psy3751 111 VR--L---R-KPNTDSRNAAQSITL----LETIKEFKFDACIGGARRDEEKARAK--ERIFSFRDKFGQWNPKSQRPELW 178 (967)
Q Consensus 111 ~~--~---~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~G~R~des~~R~~--~~~~~~~~~~~~~~~~~~~p~~~ 178 (967)
.. . . ...+..-...|-..+ ..++...|.+.+++|.+.+|...-.. ..++..-+
T Consensus 77 ~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~--------------- 141 (209)
T PF06508_consen 77 IEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMN--------------- 141 (209)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHH---------------
T ss_pred cCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHH---------------
Confidence 00 0 0 000111111222222 33455679999999999998421110 01111000
Q ss_pred ccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 179 NLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 179 ~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
...+.. ..+......|+.+|++.||+......++|+..-|
T Consensus 142 ~~~~~~-~~~~v~i~~P~~~~tK~eiv~~~~~lg~~~~~T~ 181 (209)
T PF06508_consen 142 RLLNLG-EGGPVRIETPLIDLTKAEIVKLGVELGVPLELTW 181 (209)
T ss_dssp HHHHHH-HTS--EEE-TTTT--HHHHHHHHHHTTHHHHH-B
T ss_pred HHHHhc-CCCCEEEEecCCCCCHHHHHHHHHHcCCCHHHcc
Confidence 000000 1123455699999999999999999998766555
No 420
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.80 E-value=6.1e-08 Score=100.27 Aligned_cols=144 Identities=18% Similarity=0.232 Sum_probs=84.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhh-hccceeEeeceeeeecCC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESE-REQGITIDVAYRYFNTPK 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e-~~~g~Ti~~~~~~~~~~~ 403 (967)
++|+++|.+|+||||++|.|++.... +.. .....|..........++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f--------------------------------~~~~~~~~~t~~~~~~~~~~~g 48 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVF--------------------------------KSGSSAKSVTQECQKYSGEVDG 48 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-S--------------------------------S--TTTSS--SS-EEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccce--------------------------------eeccccCCcccccceeeeeecc
Confidence 58999999999999999999973211 000 112234444444457788
Q ss_pred ceEEEeeChhh-------HHHHHHHHh----hcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHHHcCC---CeEE
Q psy3751 404 RKFIIADTPGH-------EQYTRNMIT----GASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAHLLRI---KHII 468 (967)
Q Consensus 404 ~~~~liDtpG~-------~~~~~~~~~----~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~~~~~---~~ii 468 (967)
+.+++|||||. ++..+++.. .....+++|||+.... +....+..+. +...+|- +++|
T Consensus 49 ~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r--------~t~~~~~~l~~l~~~FG~~~~k~~i 120 (212)
T PF04548_consen 49 RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR--------FTEEDREVLELLQEIFGEEIWKHTI 120 (212)
T ss_dssp EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB---------SHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc--------chHHHHHHHHHHHHHccHHHHhHhh
Confidence 99999999992 223333333 2356899999999874 2333344443 3334553 6799
Q ss_pred EEEecCCccCcCH--HHHHH-HHHHHHHHHHHcCCccceEEecccc
Q psy3751 469 IAVNKMDLINYNQ--IFYKR-IVYAYKKFAEDIHFQNINTIPISAL 511 (967)
Q Consensus 469 vviNK~D~~~~~~--~~~~~-i~~~~~~~~~~~~~~~~~ii~iSa~ 511 (967)
||+|..|....+. +.++. .-..++.+++.++- .+..++..
T Consensus 121 vvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~---R~~~f~n~ 163 (212)
T PF04548_consen 121 VVFTHADELEDDSLEDYLKKESNEALQELIEKCGG---RYHVFNNK 163 (212)
T ss_dssp EEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT---CEEECCTT
T ss_pred HHhhhccccccccHHHHHhccCchhHhHHhhhcCC---EEEEEecc
Confidence 9999999776432 11221 22357788888875 44554444
No 421
>KOG0071|consensus
Probab=98.80 E-value=3.4e-08 Score=88.87 Aligned_cols=149 Identities=20% Similarity=0.229 Sum_probs=99.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
..+|..+|-.++||||++-.|.-..... .--|+.+....+.+.+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~------------------------------------~ipTvGFnvetVtykN 60 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVT------------------------------------TIPTVGFNVETVTYKN 60 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcc------------------------------------cccccceeEEEEEeee
Confidence 5679999999999999999886411100 0013333444566778
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HH--HHcCCCeEEEEEecCCccCcC
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IA--HLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~--~~~~~~~iivviNK~D~~~~~ 480 (967)
..++++|..|..+..+-+........++|||+|+.+. .-....++.+. ++ +.+.--.++|..||-|+.++.
T Consensus 61 ~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~------dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 61 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR------DRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred eEEeeeeccCchhhhHHHHhhccCCceEEEEEeccch------hhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 8999999999999888898899999999999999872 11222222221 11 223334478889999998754
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.. .++.+.++ ++.+.-++..+.|.||.+|+|+.+
T Consensus 135 ~p--qei~d~le--Le~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 135 KP--QEIQDKLE--LERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred CH--HHHHHHhc--cccccCCccEeeccccccchhHHH
Confidence 31 33333221 122333456789999999999876
No 422
>KOG4252|consensus
Probab=98.80 E-value=1.9e-09 Score=100.69 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=99.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee--e
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY--F 399 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~--~ 399 (967)
...++++|+|.-++||||++.+.+. |.+.++ -+..|.+|+.... +
T Consensus 18 e~aiK~vivGng~VGKssmiqryCk--gifTkd-------------------------------ykktIgvdflerqi~v 64 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCK--GIFTKD-------------------------------YKKTIGVDFLERQIKV 64 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhc--cccccc-------------------------------cccccchhhhhHHHHh
Confidence 4568999999999999999999985 111110 0011222222222 2
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCC-CCCCCCCCchhhHHHHHH-HHHHcCCCeEEEEEecCCcc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK-IKFNPSVNLLTQTKRHSI-IAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-~~~~~~~g~~~~t~~~~~-~~~~~~~~~iivviNK~D~~ 477 (967)
..++..+.+|||.|++.|-..+....+.|.+.+||++.++ ..| .-+.+... .-...+--|.++|-||+|++
T Consensus 65 ~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SF-------ea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 65 LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSF-------EATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHH-------HHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 2345567899999999998888888899999999999987 222 12233222 22223333488999999999
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+.++-.- .+++.+.+.+.. .++.+|++...|+.+..
T Consensus 138 eds~~~~----~evE~lak~l~~---RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 138 EDSQMDK----GEVEGLAKKLHK---RLYRTSVKEDFNVMHVF 173 (246)
T ss_pred Hhhhcch----HHHHHHHHHhhh---hhhhhhhhhhhhhHHHH
Confidence 7544322 233444445444 67899999999998754
No 423
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.80 E-value=2.4e-08 Score=109.00 Aligned_cols=148 Identities=18% Similarity=0.248 Sum_probs=80.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccce---eEeeceee
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGI---TIDVAYRY 398 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~---Ti~~~~~~ 398 (967)
+..++|+++|.+|+|||||||+|.+- |. ++ ..+. ..|+ |.+. ..
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl-~~---~d-----~~aA----------------------~tGv~etT~~~--~~ 79 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGL-GH---ED-----EGAA----------------------PTGVVETTMEP--TP 79 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT---T---TS-----TTS------------------------SSSHSCCTS---EE
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCC-CC---CC-----cCcC----------------------CCCCCcCCCCC--ee
Confidence 35689999999999999999999751 00 00 0000 0122 1111 11
Q ss_pred eecCC-ceEEEeeChhh-------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEE
Q psy3751 399 FNTPK-RKFIIADTPGH-------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIA 470 (967)
Q Consensus 399 ~~~~~-~~~~liDtpG~-------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivv 470 (967)
+...+ -++++||.||. .+|.+.+ .+..-|..|+|.+. . +.......+..+..+|.+ +.+|
T Consensus 80 Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~-r--------f~~ndv~La~~i~~~gK~-fyfV 147 (376)
T PF05049_consen 80 YPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSE-R--------FTENDVQLAKEIQRMGKK-FYFV 147 (376)
T ss_dssp EE-SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESS-S----------HHHHHHHHHHHHTT-E-EEEE
T ss_pred CCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCC-C--------CchhhHHHHHHHHHcCCc-EEEE
Confidence 22232 46999999993 3566654 46788986665553 2 333334444556667766 9999
Q ss_pred EecCCc-c-C--------cC-HHHHHHHHHHHHHHHHHcCCccceEEeccccCCC
Q psy3751 471 VNKMDL-I-N--------YN-QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGD 514 (967)
Q Consensus 471 iNK~D~-~-~--------~~-~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~ 514 (967)
-||+|. + + .+ +..++++.+...+-+++.|...++++-||...-.
T Consensus 148 RTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 148 RTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp E--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred EecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 999995 1 1 12 2335667777777777778888899999987543
No 424
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.79 E-value=1.7e-08 Score=100.74 Aligned_cols=65 Identities=25% Similarity=0.247 Sum_probs=44.9
Q ss_pred CceEEEeeChhhHH----HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 403 KRKFIIADTPGHEQ----YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 403 ~~~~~liDtpG~~~----~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
...+.|+||||..+ ....+...+..+|++|+|+++.. ....+..+.+........+.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~-------~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ-------DLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS-------TGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc-------ccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 35689999999422 22334455689999999999998 5655555555555555555699999995
No 425
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.77 E-value=5.9e-08 Score=105.96 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=59.7
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
..++.+.|+||||...-. ...+..+|.++++.+... + .....+. ...++.+ .++|+||+|+.+..
T Consensus 124 ~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~-------~---~el~~~~-~~l~~~~-~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT-------G---DDLQGIK-AGLMEIA-DIYVVNKADGEGAT 188 (300)
T ss_pred hCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc-------c---HHHHHHH-HHHhhhc-cEEEEEcccccchh
Confidence 357889999999954222 234567899998865443 1 1111111 1123445 68899999998643
Q ss_pred HHHHHHHHH----HHHHHHHHc-CCccceEEeccccCCCccccccc
Q psy3751 481 QIFYKRIVY----AYKKFAEDI-HFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 481 ~~~~~~i~~----~~~~~~~~~-~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
.. ..+.. .+..+.+.. ++ ..+++++||++|.|++++.+
T Consensus 189 ~~--~~~~~~~~~~l~~l~~~~~~~-~~~v~~iSA~~g~Gi~~L~~ 231 (300)
T TIGR00750 189 NV--TIARLMLALALEEIRRREDGW-RPPVLTTSAVEGRGIDELWD 231 (300)
T ss_pred HH--HHHHHHHHHHHhhccccccCC-CCCEEEEEccCCCCHHHHHH
Confidence 21 11111 112222211 22 24689999999999998644
No 426
>PTZ00323 NAD+ synthase; Provisional
Probab=98.74 E-value=1.6e-07 Score=100.19 Aligned_cols=169 Identities=14% Similarity=0.040 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCcEEEEecChhHHHHHHHHHHhcCCCC-CCeeEEEeeCCCC-ChhhHHHHHHHHHHhC
Q psy3751 19 LDWLESEAIHIMREVSAE--CNNPVLLFSGGKDSVVLLRLAEKAFRPSR-FPFPMVHIDTGHN-FPEVISFRDNCISKLG 94 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~--~~~i~va~SGGKDS~vlL~l~~~~~~~~~-~~i~~v~idtg~~-~pet~~~~~~~~~~~g 94 (967)
.+..++...+.|+++++. .++++|++|||.||++++.++.++++... +...++.+..... .+.+.+.++++++.+|
T Consensus 26 ~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lG 105 (294)
T PTZ00323 26 PAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACG 105 (294)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 445556666777777766 58899999999999999999999976422 1244555554433 5678899999999999
Q ss_pred CcEEEEecchhhhhccc---c-cCCCC-----cccchhhcHHH---HHHHHHHcCCcEEEEec-cchhhHhhhccccccc
Q psy3751 95 ETLIVRSVEDSIMKGTV---R-LRKPN-----TDSRNAAQSIT---LLETIKEFKFDACIGGA-RRDEEKARAKERIFSF 161 (967)
Q Consensus 95 i~i~~~~~~~~~~~~~~---~-~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~G~-R~des~~R~~~~~~~~ 161 (967)
++++++...+.+..... . .+... -....++|... +.+.+.+.|...++.|+ +++|...- ......+
T Consensus 106 i~~~~idi~~l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~-Gy~t~~G 184 (294)
T PTZ00323 106 ATEVTVDQTEIHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDGYL-GYFCKAG 184 (294)
T ss_pred CcEEEEECcHHHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhhHh-chHhhcC
Confidence 99999988765422110 0 00000 00112222222 22333346778999999 99984211 1111111
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 162 RDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 162 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
+. ..-+.||.++++.||+...+..++|
T Consensus 185 Dg--------------------------~~d~~pia~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 185 DG--------------------------VVDVQLISDLHKSEVFLVARELGVP 211 (294)
T ss_pred CC--------------------------CcCchhhcCCcHHHHHHHHHHcCCC
Confidence 11 2346799999999999999999886
No 427
>KOG0077|consensus
Probab=98.74 E-value=7.7e-08 Score=89.56 Aligned_cols=116 Identities=22% Similarity=0.183 Sum_probs=82.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.-++++.|--|||||||++.|-.+.- +. +--|...+...+...
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl------------------------------~q------hvPTlHPTSE~l~Ig 62 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL------------------------------GQ------HVPTLHPTSEELSIG 62 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc------------------------------cc------cCCCcCCChHHheec
Confidence 345699999999999999998854110 00 112445555567778
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH---HHcCCCeEEEEEecCCccCc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA---HLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~---~~~~~~~iivviNK~D~~~~ 479 (967)
+.+++-+|..||..-..-+...+..+|.++++||+.+.+ .....++++..+ ..+..-++++..||+|.+..
T Consensus 63 ~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~e------r~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 63 GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQE------RFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred CceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHH------HhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 889999999999998888888899999999999998832 223344444333 22333347888999999875
Q ss_pred C
Q psy3751 480 N 480 (967)
Q Consensus 480 ~ 480 (967)
.
T Consensus 137 ~ 137 (193)
T KOG0077|consen 137 A 137 (193)
T ss_pred c
Confidence 3
No 428
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.72 E-value=5e-08 Score=101.31 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=49.2
Q ss_pred ceEEEeeChhhH--------H----HHHH-HHhhcc-cCCEEEEEEeCCCCCCCCCCCchhhH-HHHHHHHHHcCCCeEE
Q psy3751 404 RKFIIADTPGHE--------Q----YTRN-MITGAS-TADAVIILIDASKIKFNPSVNLLTQT-KRHSIIAHLLRIKHII 468 (967)
Q Consensus 404 ~~~~liDtpG~~--------~----~~~~-~~~~~~-~aD~~ilVvda~~~~~~~~~g~~~~t-~~~~~~~~~~~~~~ii 468 (967)
..++++||||.. + .+.+ +..++. ..+++++|+|++. ++..+. .+.+..+...+.+ +|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~-------d~~~~d~l~ia~~ld~~~~r-ti 196 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV-------DLANSDALKLAKEVDPQGER-TI 196 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC-------CCCchhHHHHHHHHHHcCCc-EE
Confidence 579999999953 1 1222 344455 4569999999988 666655 4555556666655 89
Q ss_pred EEEecCCccCcCHH
Q psy3751 469 IAVNKMDLINYNQI 482 (967)
Q Consensus 469 vviNK~D~~~~~~~ 482 (967)
+|+||+|..+...+
T Consensus 197 ~ViTK~D~~~~~~~ 210 (240)
T smart00053 197 GVITKLDLMDEGTD 210 (240)
T ss_pred EEEECCCCCCccHH
Confidence 99999999875443
No 429
>KOG0072|consensus
Probab=98.71 E-value=4.1e-08 Score=88.82 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=96.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...++.++|-.|+||+|++-+|-. |.+ ++ .--|+......+.++
T Consensus 17 ~e~rililgldGaGkttIlyrlqv--gev----------------------------vt------tkPtigfnve~v~yK 60 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQV--GEV----------------------------VT------TKPTIGFNVETVPYK 60 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEccc--Ccc----------------------------cc------cCCCCCcCccccccc
Confidence 446799999999999998777643 111 00 011344444456667
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
+-++.++|..|......-+.......|.+|+|||+++ ....+..+.....++.-..+.-..++|+.||+|....-..
T Consensus 61 NLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd---~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~ 137 (182)
T KOG0072|consen 61 NLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD---RDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR 137 (182)
T ss_pred cccceeeEccCcccccHHHHHHhcccceEEEEEeccc---hhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH
Confidence 8899999999987777777777889999999999987 1222333333322222233333558899999998653211
Q ss_pred HHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.++...+. +..+.-..+.+|..||.+|+|++.
T Consensus 138 --~E~~~~L~--l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 138 --SEVLKMLG--LQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred --HHHHHHhC--hHHHhhheeEEEeeccccccCCcH
Confidence 11111110 111111246899999999999987
No 430
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.71 E-value=2.4e-08 Score=104.39 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=105.7
Q ss_pred HHHHHHHHHHc--CCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecc
Q psy3751 26 AIHIMREVSAE--CNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVE 103 (967)
Q Consensus 26 a~~~i~~~~~~--~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~ 103 (967)
..+.|++.++. .+++++++|||.||++++.|+.+++.+ .++.++++++....+++.+.++++++.+|+++.++..+
T Consensus 5 l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~--~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~ 82 (242)
T PF02540_consen 5 LVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGP--DNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDID 82 (242)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGG--GEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESH
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhh--ccccccccccccCChHHHHHHHHHHHHhCCCeeccchH
Confidence 34444544443 368899999999999999999999842 36899999988888999999999999999999999887
Q ss_pred hhhhhcccccCCC-----CcccchhhcHHHHHHHHHHcCCcEEEEec-cchhhHhhhccccccccccCCCCCCCCCCccc
Q psy3751 104 DSIMKGTVRLRKP-----NTDSRNAAQSITLLETIKEFKFDACIGGA-RRDEEKARAKERIFSFRDKFGQWNPKSQRPEL 177 (967)
Q Consensus 104 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~ 177 (967)
+.+.......... ....+.++|...+...+...+ .++.|+ +++|.. .-++. .++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~--~lVlgT~N~sE~~----~Gy~T---~~GD---------- 143 (242)
T PF02540_consen 83 PIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYN--YLVLGTGNKSELL----LGYFT---KYGD---------- 143 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEBE--CHHHHH----HTCSH---TTTT----------
T ss_pred HHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccc--eEEecCCcHHHhh----cCccc---ccCc----------
Confidence 6543221111100 011223344445555666555 444443 233321 11111 1110
Q ss_pred cccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 178 WNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 178 ~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
+..-+.||.+..+.|||+..+..++|-.-+.
T Consensus 144 -----------~~~d~~Pi~~L~K~eV~~la~~l~ip~~ii~ 174 (242)
T PF02540_consen 144 -----------GAGDIAPIADLYKTEVRELARYLGIPEEIIE 174 (242)
T ss_dssp -----------TSSSBETTTTS-HHHHHHHHHHTTCGHHHHC
T ss_pred -----------ccccceeeCCcCHHHHHHHHHHHhhHHHHhc
Confidence 1123789999999999999999999866655
No 431
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.68 E-value=1.1e-07 Score=97.37 Aligned_cols=173 Identities=23% Similarity=0.202 Sum_probs=86.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHH-HHHHhHHHhhcccCCCceeeeeccCCchhh---hccceeEeecee
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQ-LDAVSRTKYKRVMSGHNIDLSLLTDGLESE---REQGITIDVAYR 397 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e---~~~g~Ti~~~~~ 397 (967)
.+...|+|.|.||+|||||+++|......-..+. .-.+.+++. .+|+++ +-|+..-. ...|+-|-....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp---~tGGAl----LGDRiRM~~~~~d~~vfIRS~at 99 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP---FTGGAL----LGDRIRMQELSRDPGVFIRSMAT 99 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG---CC---S----S--GGGCHHHHTSTTEEEEEE--
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC---CCCCcc----cccHHHhcCcCCCCCEEEeecCc
Confidence 3567899999999999999999986221000000 000011111 122222 22222211 122332211100
Q ss_pred ----------------eeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH
Q psy3751 398 ----------------YFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL 461 (967)
Q Consensus 398 ----------------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~ 461 (967)
-++..++.+.|+.|.|--+---. -...+|..++|+-...+ ..++..-.-.+.++
T Consensus 100 RG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~G-----D~iQ~~KaGimEia-- 169 (266)
T PF03308_consen 100 RGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLG-----DEIQAIKAGIMEIA-- 169 (266)
T ss_dssp -SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTC-----CCCCTB-TTHHHH---
T ss_pred CCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCc-----cHHHHHhhhhhhhc--
Confidence 12224688999999994322111 24679999999987662 13444333344443
Q ss_pred cCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCC----ccceEEeccccCCCccccccc
Q psy3751 462 LRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF----QNINTIPISALNGDNIISASN 521 (967)
Q Consensus 462 ~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~ii~iSa~~g~gi~~l~~ 521 (967)
. |+|+||.|+... +....+++..+....- ..+|++.+||.+|.|++++.+
T Consensus 170 ---D--i~vVNKaD~~gA-----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 170 ---D--IFVVNKADRPGA-----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp ---S--EEEEE--SHHHH-----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHH
T ss_pred ---c--EEEEeCCChHHH-----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 2 678999996543 3344555555543221 146999999999999999543
No 432
>KOG2840|consensus
Probab=98.68 E-value=1.2e-08 Score=105.30 Aligned_cols=173 Identities=16% Similarity=0.064 Sum_probs=130.7
Q ss_pred HHHcCCCcEEEEecChhHHHHHHHHHHhcCC--CCCCeeEEEeeCCCCC--hhhHHHHHHHHHHhCCcEEEEecchhhhh
Q psy3751 33 VSAECNNPVLLFSGGKDSVVLLRLAEKAFRP--SRFPFPMVHIDTGHNF--PEVISFRDNCISKLGETLIVRSVEDSIMK 108 (967)
Q Consensus 33 ~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~--~~~~i~~v~idtg~~~--pet~~~~~~~~~~~gi~i~~~~~~~~~~~ 108 (967)
.+...+++.++-||||||+|+.+.+..+-.+ .+.++..+.+|.|+.+ ...++.+++...+|++|+.++.+++.+..
T Consensus 47 l~~rge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~ 126 (347)
T KOG2840|consen 47 LFARGERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGE 126 (347)
T ss_pred ccCCCCccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhcc
Confidence 4555578889999999999999998887544 2456788999999874 55888899999999999999988775431
Q ss_pred --------cccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcccccc
Q psy3751 109 --------GTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNL 180 (967)
Q Consensus 109 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~ 180 (967)
........+|.+|..+|+..+.+.+...+.+...|||++||-+.+..+++++++...... -..|.
T Consensus 127 ~tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R------~~~~~- 199 (347)
T KOG2840|consen 127 WTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLER------LTEIT- 199 (347)
T ss_pred chHHHHHHHHhhhhhcCceeecHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHhHHHHhhh------ccccc-
Confidence 111124567888998999999998888888999999999999999999999977542210 00000
Q ss_pred ccccC-CCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 181 YNTRV-HPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 181 ~~~~~-~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
+.. ..+...+.+||-+-++.||-.|.....+.
T Consensus 200 --t~~~e~~~~~r~kplk~~~~keivLya~~~~L~ 232 (347)
T KOG2840|consen 200 --TPSLEMGIIPRLKPLKYASEKEIVLYASLSKLR 232 (347)
T ss_pred --cCccccCccccccccccchhhehhhHHHHHHHH
Confidence 111 12235688999999999999988777553
No 433
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.67 E-value=1.3e-08 Score=107.43 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=32.6
Q ss_pred EEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 467 IIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 467 iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
-++|+||+|++++.....+.+.+.++.+ . +..+++++||++|+|+++
T Consensus 233 DIVVLNKiDLl~~~~~dle~~~~~lr~l----n-p~a~I~~vSA~tGeGld~ 279 (290)
T PRK10463 233 SLMLLNKVDLLPYLNFDVEKCIACAREV----N-PEIEIILISATSGEGMDQ 279 (290)
T ss_pred cEEEEEhHHcCcccHHHHHHHHHHHHhh----C-CCCcEEEEECCCCCCHHH
Confidence 4778999999865433344444433333 2 346899999999999998
No 434
>KOG2644|consensus
Probab=98.67 E-value=1.8e-08 Score=102.94 Aligned_cols=141 Identities=26% Similarity=0.411 Sum_probs=97.7
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCC--------CCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSR--------FPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGT 110 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~--------~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~ 110 (967)
.+..+|.||||.+++|+++.+.+.+-. -.++.+|++....||+..+|+......|.+.+..+....
T Consensus 84 ~~a~SFnggkdc~vll~ll~~~l~~~~~~~~~~p~~~i~~~~~~~~~~fp~~~~fv~~~~~~y~~~l~~~~~~~------ 157 (282)
T KOG2644|consen 84 EMALSFNGGKDCTVLLLLLMRYLRDEYAEKLDQPSTAIPAVYIDVEDSFPELEDFVSVCVFKYRPQLSRLSGAG------ 157 (282)
T ss_pred HHHHhhCCCCChHHHHHHHHHHhcchhhhhccCCCccccceeecCCCCcccccchHHHHHHhhccchhhccCcc------
Confidence 456899999999999999988655311 246799999999999999999999988877655221110
Q ss_pred cccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCc
Q psy3751 111 VRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGEN 190 (967)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 190 (967)
.+++..-..........+++.|.|..|...-+..++...+. .|+ ..
T Consensus 158 ------------~lk~~~~~~~~~~~~~k~i~vg~r~~dp~g~~~~~~~~td~-------------~wp---------~~ 203 (282)
T KOG2644|consen 158 ------------RLKKALSLFKKVDPESKAILVGIRNTDPVGEALAPFERTDS-------------LWP---------QF 203 (282)
T ss_pred ------------hHHHHHHHhhhhhhhhhhHhhhhhhCCCccceecceeeccC-------------Cch---------hh
Confidence 11111111111112345777888888776633222222222 233 23
Q ss_pred eEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 191 IRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 191 ~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
++..|+++|+..|||.|++..++|+|.||
T Consensus 204 ~r~~pll~ws~t~vw~~l~~~~~p~c~ly 232 (282)
T KOG2644|consen 204 MRLLPLLEWSYTDVWDLLREGNLPYCGLY 232 (282)
T ss_pred hhhcccccchHHHHHHHHhcCCCceeeee
Confidence 78899999999999999999999999999
No 435
>KOG1486|consensus
Probab=98.66 E-value=1.6e-07 Score=93.28 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=79.0
Q ss_pred hHHHHHhhhhhhhhhhcccccccccchhhHHhhhcccC--cccccccccCCCeeEEEEEecCCCChHHHHhHHHhccCCC
Q psy3751 274 VEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEA--PEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNI 351 (967)
Q Consensus 274 l~~~i~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~ 351 (967)
++......+.+.++|-+...+..+......+.+.-... .........+...-+|+++|.|.+|||||+..++......
T Consensus 10 IE~EmaRTQKNKaTEyHLGlLKaKlAkyR~qLlep~~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~Sea 89 (364)
T KOG1486|consen 10 IEAEMARTQKNKATEYHLGLLKAKLAKYRQQLLEPTKGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEA 89 (364)
T ss_pred HHHHHHHhhhccchhHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhh
Confidence 33444444556666655544433332222222211111 1112223445677899999999999999999998621110
Q ss_pred ChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceEEEeeChhhHH-------HHHHHHhh
Q psy3751 352 FIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQ-------YTRNMITG 424 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~liDtpG~~~-------~~~~~~~~ 424 (967)
.+.+|. |...-...+++++..+.++|.||.-. --+..++.
T Consensus 90 -------------------A~yeFT--------------TLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 90 -------------------ASYEFT--------------TLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred -------------------hceeee--------------EEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE
Confidence 112221 22222334778889999999999321 13456677
Q ss_pred cccCCEEEEEEeCCCC
Q psy3751 425 ASTADAVIILIDASKI 440 (967)
Q Consensus 425 ~~~aD~~ilVvda~~~ 440 (967)
++.||+++.|.||+..
T Consensus 137 ArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 137 ARTADLILMVLDATKS 152 (364)
T ss_pred eecccEEEEEecCCcc
Confidence 7899999999999974
No 436
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.66 E-value=4.5e-08 Score=99.72 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=56.5
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
+..+++|+|.|.. ...... -..+|.+|.|+|+.+ +...+. . ...+.... =++++||+|+.+....
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~-------~~~~~~-~---~~~qi~~a-d~~~~~k~d~~~~~~~ 155 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAA-------GDKIPR-K---GGPGITRS-DLLVINKIDLAPMVGA 155 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcch-------hhhhhh-h---hHhHhhhc-cEEEEEhhhccccccc
Confidence 4568899999921 111001 122688999999987 322111 1 01122222 1678999999853222
Q ss_pred HHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.+.+.++.+ + ...+++++||++|+|++++
T Consensus 156 ~~~~~~~~~~~~----~-~~~~i~~~Sa~~g~gi~el 187 (199)
T TIGR00101 156 DLGVMERDAKKM----R-GEKPFIFTNLKTKEGLDTV 187 (199)
T ss_pred cHHHHHHHHHHh----C-CCCCEEEEECCCCCCHHHH
Confidence 333344444433 2 2468999999999999984
No 437
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.64 E-value=3e-07 Score=92.86 Aligned_cols=133 Identities=19% Similarity=0.107 Sum_probs=91.4
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChh------hHHHHHHHHHHhCCcEEEEecchhhhhcccc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPE------VISFRDNCISKLGETLIVRSVEDSIMKGTVR 112 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pe------t~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~ 112 (967)
+++++|||||||+++++++.+. +.++.++++++...... ..+.++++++.+|+|++++.......
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e----- 71 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEE----- 71 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCch-----
Confidence 4689999999999999999996 55788888876544322 56889999999999999876532100
Q ss_pred cCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceE
Q psy3751 113 LRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIR 192 (967)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 192 (967)
.+. ..-...+.+...+ |.+.++.|...+|...+...++.+ .- +..-
T Consensus 72 ------~~~-~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~---~~-----------------------gl~~ 117 (194)
T cd01994 72 ------DEV-EDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCE---RL-----------------------GLEP 117 (194)
T ss_pred ------HHH-HHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHH---Hc-----------------------CCEE
Confidence 011 1111223333444 899999999998874433222222 11 2356
Q ss_pred EeeCCCCcHHHHHHHHHHcCCC
Q psy3751 193 VFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 193 i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
+.||...+.+++..=+...|+.
T Consensus 118 ~~PLW~~~~~~ll~e~~~~g~~ 139 (194)
T cd01994 118 LAPLWGRDQEELLREMIEAGFK 139 (194)
T ss_pred EecccCCCHHHHHHHHHHcCCe
Confidence 7899999999999888888875
No 438
>KOG2486|consensus
Probab=98.64 E-value=6.8e-08 Score=98.01 Aligned_cols=165 Identities=15% Similarity=0.118 Sum_probs=104.6
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
......+++.|..|+|||+|+|.++..... ..++. ...|-|..+.+..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~---------~~t~k---------------------~K~g~Tq~in~f~-- 180 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNI---------ADTSK---------------------SKNGKTQAINHFH-- 180 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhh---------hhhcC---------------------CCCccceeeeeee--
Confidence 345678999999999999999999862111 00000 0234444433322
Q ss_pred cCCceEEEeeChh-------------hHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeE
Q psy3751 401 TPKRKFIIADTPG-------------HEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHI 467 (967)
Q Consensus 401 ~~~~~~~liDtpG-------------~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~i 467 (967)
-+.++.++|.|| ..+|.+.....-.+-=-+++++|+.. ++++.....+..+...++| +
T Consensus 181 -v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv-------~i~~~D~~~i~~~ge~~VP-~ 251 (320)
T KOG2486|consen 181 -VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASV-------PIQPTDNPEIAWLGENNVP-M 251 (320)
T ss_pred -ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccC-------CCCCCChHHHHHHhhcCCC-e
Confidence 256799999999 12333333333234456788899998 8888888888889899998 8
Q ss_pred EEEEecCCccCcCH----HHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCC
Q psy3751 468 IIAVNKMDLINYNQ----IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWY 526 (967)
Q Consensus 468 ivviNK~D~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~ 526 (967)
.+|+||||....-. .....++..+..+....-....|++.+|+.++.|++.|.-.|.|-
T Consensus 252 t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 252 TSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred EEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 88999999764211 001112222222222222235678889999999999987666553
No 439
>KOG1490|consensus
Probab=98.62 E-value=7.4e-08 Score=104.93 Aligned_cols=160 Identities=17% Similarity=0.201 Sum_probs=95.7
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
..+...+.+||.+|+||||++|.++...-.+ -.|++ .|-.+-..++.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvev---------------------qpYaF------------TTksL~vGH~d 211 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEV---------------------QPYAF------------TTKLLLVGHLD 211 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccccc---------------------CCccc------------ccchhhhhhhh
Confidence 4466789999999999999999887622211 01111 12222223344
Q ss_pred cCCceEEEeeChhhHH------HHHH--HHhhc-ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEE
Q psy3751 401 TPKRKFIIADTPGHEQ------YTRN--MITGA-STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAV 471 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~------~~~~--~~~~~-~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivvi 471 (967)
+.-..+.++||||.-+ -+-+ .++++ ..--+++++.|.++ ..+.++..|.+-.-.+-..+..+++|+|+
T Consensus 212 ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe---~CGySva~QvkLfhsIKpLFaNK~~Ilvl 288 (620)
T KOG1490|consen 212 YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSE---MCGYSVAAQVKLYHSIKPLFANKVTILVL 288 (620)
T ss_pred hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechh---hhCCCHHHHHHHHHHhHHHhcCCceEEEe
Confidence 5556788999999221 1112 22333 22346788899987 44556666655444444445566799999
Q ss_pred ecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 472 NKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 472 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
||+|....+. +.+-..++.+.++.-+ +++++.+|..+.+|+.++.
T Consensus 289 NK~D~m~~ed--L~~~~~~ll~~~~~~~--~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 289 NKIDAMRPED--LDQKNQELLQTIIDDG--NVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred ecccccCccc--cCHHHHHHHHHHHhcc--CceEEEecccchhceeeHH
Confidence 9999875321 1111222222222222 3689999999999998864
No 440
>KOG0074|consensus
Probab=98.62 E-value=1.2e-07 Score=85.45 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=94.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|.++|--|+||||++..|.++.- ..+ .+-.|. ....++.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~--------------------------~hl------tpT~GF----n~k~v~~ 58 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP--------------------------RHL------TPTNGF----NTKKVEY 58 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh--------------------------hhc------cccCCc----ceEEEee
Confidence 4568999999999999999999976210 000 011222 2233455
Q ss_pred CC-ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH-HHHHH---cCCCeEEEEEecCCc
Q psy3751 402 PK-RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS-IIAHL---LRIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~-~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~-~~~~~---~~~~~iivviNK~D~ 476 (967)
.+ .+++++|..|++....-+...+...|.+|+|||+++..| ...+.+++ .++.. ..+| +.+..||-|+
T Consensus 59 ~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr------feE~~~el~ELleeeKl~~vp-vlIfankQdl 131 (185)
T KOG0074|consen 59 DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR------FEEISEELVELLEEEKLAEVP-VLIFANKQDL 131 (185)
T ss_pred cCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh------HHHHHHHHHHHhhhhhhhccc-eeehhhhhHH
Confidence 44 789999999988877777778889999999999887322 12333333 33322 2344 7777999998
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.... .+++...+ -+..+....+.+-..||++++|+...
T Consensus 132 ltaa~--~eeia~kl--nl~~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 132 LTAAK--VEEIALKL--NLAGLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred Hhhcc--hHHHHHhc--chhhhhhceEEeeeCccccccCccCc
Confidence 74322 12221111 01112223568888999999998763
No 441
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.61 E-value=3.1e-08 Score=96.13 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=56.3
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCC-EEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTAD-AVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD-~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
..+.||...| ....... ..-.| .-|+|||.++++--...+-...++ .=++||||.|++++-..
T Consensus 97 ~Dll~iEs~G--NL~~~~s--p~L~d~~~v~VidvteGe~~P~K~gP~i~~------------aDllVInK~DLa~~v~~ 160 (202)
T COG0378 97 LDLLFIESVG--NLVCPFS--PDLGDHLRVVVIDVTEGEDIPRKGGPGIFK------------ADLLVINKTDLAPYVGA 160 (202)
T ss_pred CCEEEEecCc--ceecccC--cchhhceEEEEEECCCCCCCcccCCCceeE------------eeEEEEehHHhHHHhCc
Confidence 4688888888 2222211 12245 889999999954322221111111 12678999999865333
Q ss_pred HHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
..+...+..++ .. ++.||+.+|+++|+|+++
T Consensus 161 dlevm~~da~~----~n-p~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 161 DLEVMARDAKE----VN-PEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred cHHHHHHHHHH----hC-CCCCEEEEeCCCCcCHHH
Confidence 33333333333 33 356999999999999987
No 442
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.61 E-value=6.5e-07 Score=102.55 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=69.1
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.-.++|+++|.+|+|||||+|.|++..... ... ...+.| .........
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~---------------------------vss----~~~~TT-r~~ei~~~i 163 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFS---------------------------TDA----FGMGTT-SVQEIEGLV 163 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcccccc---------------------------ccC----CCCCce-EEEEEEEEE
Confidence 445789999999999999999999732110 000 011222 222223344
Q ss_pred CCceEEEeeChhhHH----------HHHHHHhhcc--cCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHHHcC---CC
Q psy3751 402 PKRKFIIADTPGHEQ----------YTRNMITGAS--TADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAHLLR---IK 465 (967)
Q Consensus 402 ~~~~~~liDtpG~~~----------~~~~~~~~~~--~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~~~~---~~ 465 (967)
++..+.+|||||..+ ..+.....+. .+|++|+|+..... ....+....+. +...+| .+
T Consensus 164 dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~------~~D~eD~~aLr~Iq~lFG~~Iwk 237 (763)
T TIGR00993 164 QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQ------TRDSNDLPLLRTITDVLGPSIWF 237 (763)
T ss_pred CCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCc------cccHHHHHHHHHHHHHhCHHhHc
Confidence 678899999999432 2222222333 47988888765431 11111222222 223344 26
Q ss_pred eEEEEEecCCccC
Q psy3751 466 HIIIAVNKMDLIN 478 (967)
Q Consensus 466 ~iivviNK~D~~~ 478 (967)
++|||+|+.|...
T Consensus 238 ~tIVVFThgD~lp 250 (763)
T TIGR00993 238 NAIVTLTHAASAP 250 (763)
T ss_pred CEEEEEeCCccCC
Confidence 7999999999885
No 443
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.56 E-value=4.7e-07 Score=77.94 Aligned_cols=80 Identities=34% Similarity=0.476 Sum_probs=70.4
Q ss_pred ceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEec--CCcEEEEEEEEeCccccceeecCCeEEEEEccccCCC
Q psy3751 549 LRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEP--SGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDIS 626 (967)
Q Consensus 549 ~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p--~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~ 626 (967)
+++++.++++..+.+ +++.|+|.+|++++||.+.+.+ ...+.+|++|+.++.+++++.||+.+++.+....+++
T Consensus 1 ~~~~v~~~~~~~~~g----~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRG----TVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CeeEEEEEEEeCCce----EEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEccccccC
Confidence 357788888877555 7899999999999999999999 7778999999999999999999999999997655799
Q ss_pred CCcccc
Q psy3751 627 RGNMLV 632 (967)
Q Consensus 627 ~G~vl~ 632 (967)
+||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 999875
No 444
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.53 E-value=1e-06 Score=88.31 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=106.0
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhh-hh------c-
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSI-MK------G- 109 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~-~~------~- 109 (967)
.+.+|-||||-||+++|+++++.+ .++.++++|-|......++.++++++++|++.+++.....- +. .
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~~----~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~saLtd~~ 78 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKEG----YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSALTDDS 78 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhcC----CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCcCcCCC
Confidence 467899999999999999999984 47999999999988888999999999999999988654321 10 0
Q ss_pred --ccccCC-C--CcccchhhcHHH----HHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcccccc
Q psy3751 110 --TVRLRK-P--NTDSRNAAQSIT----LLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNL 180 (967)
Q Consensus 110 --~~~~~~-~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~ 180 (967)
...... . .+..-...|-.. -..++...|.+.+++|.+..|-..- ...+|++-..
T Consensus 79 ~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgY-----------------PDcrpefi~a 141 (222)
T COG0603 79 IDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGY-----------------PDCRPEFIEA 141 (222)
T ss_pred ccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccCCC-----------------CCCCHHHHHH
Confidence 000000 0 011111122222 2334455789999999998866331 0112222222
Q ss_pred cc----ccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 181 YN----TRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 181 ~~----~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
++ -+...+......||.++++.|+|.-..+.|.|+..-+
T Consensus 142 ~~~~~~l~~~~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~ 184 (222)
T COG0603 142 LNEALNLGTEKGVRIIHAPLMELTKAEIVKLADELGVPLELTW 184 (222)
T ss_pred HHHHHHhhccCCccEEeCCeeeccHHHHHHHHHHhCCcchhce
Confidence 22 1222222224789999999999999999999887555
No 445
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=98.53 E-value=7.9e-07 Score=89.99 Aligned_cols=179 Identities=21% Similarity=0.196 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC-hhhHHHHHHHHHHhCCcE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF-PEVISFRDNCISKLGETL 97 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~-pet~~~~~~~~~~~gi~i 97 (967)
++..++.+++.|++-+. .++++++.|||.||+|+.-|++++... ++.++|+|||+.- .|..+..+.+.+.+|+++
T Consensus 4 ~~~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~AiGd---~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl 79 (315)
T COG0519 4 MENFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAIGD---QLTCVFVDHGLLRKGEAEQVVEMFREHLGLNL 79 (315)
T ss_pred HHHHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHhhc---ceEEEEecCCcccCCcHHHHHHHHHhhcCCce
Confidence 56777888888888777 588899999999999999999999754 7999999999864 445555566667799999
Q ss_pred EEEecchhhhhcccccCCCCcccchhh---cHHHHHHHHHHcCCcEEEEeccchhhHhhh---ccccccccccCCCCCCC
Q psy3751 98 IVRSVEDSIMKGTVRLRKPNTDSRNAA---QSITLLETIKEFKFDACIGGARRDEEKARA---KERIFSFRDKFGQWNPK 171 (967)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~G~R~des~~R~---~~~~~~~~~~~~~~~~~ 171 (967)
..+...+.|...+....-| ...+... -...+.+.+++.+.+.++-|+=-.|-.+-. ...+-+..+-.+
T Consensus 80 ~~VdA~~~Fl~~L~GvtDP-E~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~~g~~~~IKSHHNVGG----- 153 (315)
T COG0519 80 IVVDAKDRFLSALKGVTDP-EEKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESGTGKAGTIKSHHNVGG----- 153 (315)
T ss_pred EEEchHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeecCCCCCccccccccCC-----
Confidence 9999988877654333222 1122222 123467778888888888888755433222 111222222111
Q ss_pred CCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 172 SQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 172 ~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
.|+... .-.+-||.+.-++||...-++.|+|-.-+|
T Consensus 154 --LP~~m~----------lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~ 189 (315)
T COG0519 154 --LPEDMK----------LKLVEPLRELFKDEVRELGRELGLPEEIVY 189 (315)
T ss_pred --Cccccc----------eeeeHHHHHHhHHHHHHHHHHhCCCHHHhc
Confidence 121111 124689999999999999999999988888
No 446
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.52 E-value=2.9e-07 Score=91.95 Aligned_cols=144 Identities=15% Similarity=0.094 Sum_probs=79.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCC-CCChhhHHHHHHHHHHh---C----CcEEEEecchhhhhc
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTG-HNFPEVISFRDNCISKL---G----ETLIVRSVEDSIMKG 109 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg-~~~pet~~~~~~~~~~~---g----i~i~~~~~~~~~~~~ 109 (967)
+++++.||||.||.|..+++.+. |.++.++|++++ +..+...+.++++.+.+ + +++.++...+.....
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~kr----G~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i 79 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKR----GCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEI 79 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCB----T-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHH
T ss_pred ceEEEEecCCccHHHHHHHHHHC----CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHH
Confidence 56789999999999999999886 788999999954 33455566666655543 3 344444433322221
Q ss_pred ccccCCCCcccchhhcHHHHHHH----HHHcCCcEEEEeccchhh--HhhhccccccccccCCCCCCCCCCccccccccc
Q psy3751 110 TVRLRKPNTDSRNAAQSITLLET----IKEFKFDACIGGARRDEE--KARAKERIFSFRDKFGQWNPKSQRPELWNLYNT 183 (967)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~G~R~des--~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 183 (967)
.... ...+.|..++..+.+. +++.|.++++||....|= .....+...+...
T Consensus 80 --~~~~-~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL~~i~~~~-------------------- 136 (197)
T PF02568_consen 80 --LRGV-KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENLRVIESAS-------------------- 136 (197)
T ss_dssp --HHHS--GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHHHHHGGG---------------------
T ss_pred --HhcC-CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHHhhhhccc--------------------
Confidence 1112 3344555555555544 446899999997765542 1222222222111
Q ss_pred cCCCCCceEEeeCCCCcHHHHHHHHHHcCC
Q psy3751 184 RVHPGENIRVFPISNWTELDIWQYIEREKI 213 (967)
Q Consensus 184 ~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~l 213 (967)
+...+|||+.+.++||-+..++-|.
T Consensus 137 -----~~pIlRPLig~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 137 -----DLPILRPLIGFDKEEIIEIARKIGT 161 (197)
T ss_dssp ------S-EE-TTTT--HHHHHHHHHHTT-
T ss_pred -----CCceeCCcCCCCHHHHHHHHHHhCc
Confidence 2367999999999999999999986
No 447
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.52 E-value=1.4e-06 Score=94.52 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHcC---CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc
Q psy3751 20 DWLESEAIHIMREVSAEC---NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET 96 (967)
Q Consensus 20 ~~~~~~a~~~i~~~~~~~---~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~ 96 (967)
+...+...+.|++.++.. +++++++|||.||++++.++.+++.. .++..++++++...++..++++.+++.+|++
T Consensus 13 ~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~--~~v~av~~~~~~s~~~e~~~A~~lA~~LGi~ 90 (326)
T PRK00876 13 AAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGK--ERVYGLLMPERDSSPESLRLGREVAEHLGVE 90 (326)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCC--CcEEEEEecCCCCChHHHHHHHHHHHHcCCC
Confidence 445556666666666552 67889999999999999999987542 3678888888766677889999999999999
Q ss_pred EEEEecch
Q psy3751 97 LIVRSVED 104 (967)
Q Consensus 97 i~~~~~~~ 104 (967)
++++....
T Consensus 91 ~~~i~i~~ 98 (326)
T PRK00876 91 YVVEDITP 98 (326)
T ss_pred EEEEECch
Confidence 99987766
No 448
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.1e-06 Score=94.55 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=54.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeecee--eee-
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYR--YFN- 400 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~- 400 (967)
.++++|||-||+|||||.|+|+.....+ .++- ...-|.+.|+.-=.... .+.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~-------------------aNYP------F~TIePN~Giv~v~d~rl~~L~~ 56 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEI-------------------ANYP------FCTIEPNVGVVYVPDCRLDELAE 56 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccc-------------------cCCC------cccccCCeeEEecCchHHHHHHH
Confidence 3689999999999999999999743211 1121 11223333332111100 000
Q ss_pred --c-C----CceEEEeeChhhH-------HHHHHHHhhcccCCEEEEEEeCCC
Q psy3751 401 --T-P----KRKFIIADTPGHE-------QYTRNMITGASTADAVIILIDASK 439 (967)
Q Consensus 401 --~-~----~~~~~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~ 439 (967)
. + -..+.|+|.+|.- -.-...+.-++.+|++++|||+..
T Consensus 57 ~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 57 IVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred hcCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 0 0 1246799999921 233445556799999999999985
No 449
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.45 E-value=1.8e-06 Score=104.50 Aligned_cols=154 Identities=13% Similarity=-0.013 Sum_probs=108.1
Q ss_pred HHHHHHHHc--CCCcEEEEecChhHHHHHHHHHHhcCCCC---CCeeEEEeeCCC-CChhhHHHHHHHHHHhCCcEEEEe
Q psy3751 28 HIMREVSAE--CNNPVLLFSGGKDSVVLLRLAEKAFRPSR---FPFPMVHIDTGH-NFPEVISFRDNCISKLGETLIVRS 101 (967)
Q Consensus 28 ~~i~~~~~~--~~~i~va~SGGKDS~vlL~l~~~~~~~~~---~~i~~v~idtg~-~~pet~~~~~~~~~~~gi~i~~~~ 101 (967)
..++..+.. .++++|+.|||+||++++.++.+++...+ .++.++++ .+. ..+.+.+.++++++.+|++++++.
T Consensus 350 ~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m-p~~~ss~~s~~~a~~la~~LGi~~~~i~ 428 (679)
T PRK02628 350 SGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM-PGFATTDRTKNNAVALMKALGVTAREID 428 (679)
T ss_pred HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC-CCCCCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 334444433 48899999999999999999999854222 46888888 554 346799999999999999999998
Q ss_pred cchhhhhccccc------CCCCc-----ccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhcccccc--ccccCCCC
Q psy3751 102 VEDSIMKGTVRL------RKPNT-----DSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFS--FRDKFGQW 168 (967)
Q Consensus 102 ~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~--~~~~~~~~ 168 (967)
.++.+....... +.+.+ ..|.++|...++..+.+.|..++.|| +++|.. ...... +|.
T Consensus 429 I~~~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~---~Gy~T~~~GD~----- 499 (679)
T PRK02628 429 IRPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELA---LGWCTYGVGDH----- 499 (679)
T ss_pred cHHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHH---hCceecCCCCc-----
Confidence 876543211111 11222 23888899999999999999999999 444442 211111 111
Q ss_pred CCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcC
Q psy3751 169 NPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREK 212 (967)
Q Consensus 169 ~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~ 212 (967)
.--++||.+.++.+|+..++..+
T Consensus 500 ---------------------~~~~~~~~~l~Kt~v~~l~~~~~ 522 (679)
T PRK02628 500 ---------------------MSHYNVNASVPKTLIQHLIRWVI 522 (679)
T ss_pred ---------------------ccccccccCCcHHHHHHHHHHHH
Confidence 13478999999999999998874
No 450
>KOG2805|consensus
Probab=98.44 E-value=1.2e-06 Score=89.80 Aligned_cols=168 Identities=15% Similarity=0.094 Sum_probs=101.8
Q ss_pred cCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEee-------CCCC--ChhhHHHHHHHHHHhCCcEEEEecchhh
Q psy3751 36 ECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHID-------TGHN--FPEVISFRDNCISKLGETLIVRSVEDSI 106 (967)
Q Consensus 36 ~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~id-------tg~~--~pet~~~~~~~~~~~gi~i~~~~~~~~~ 106 (967)
..++++|+.|||.||.|.++|+++. +.++..+|+- .|.+ ++...+.++++|++++||++.+.....+
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~~----g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEY 79 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAAR----GYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEY 79 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHhc----CCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHH
Confidence 3478999999999999999999988 6678888772 2212 2235678999999999999999887766
Q ss_pred hhcc--------cccCCCCcc-cchh-hcHH-HHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCc
Q psy3751 107 MKGT--------VRLRKPNTD-SRNA-AQSI-TLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 107 ~~~~--------~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p 175 (967)
|... .....|+++ .|.. .|-. ..+.+....|+|.++|||=+--+ .+... ++.....-+. ..+
T Consensus 80 W~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~-----~~~~~-~~~~~l~~~~-d~~ 152 (377)
T KOG2805|consen 80 WNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVV-----LEDED-NAESHLLISK-DMV 152 (377)
T ss_pred HHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeee-----cCccc-CcceeEeecc-ccc
Confidence 6422 122234444 4544 4555 34444445899999999964322 11111 0000000000 000
Q ss_pred cccccccccCCC-CCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 176 ELWNLYNTRVHP-GENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
+--.+|-..... .-...+.||-+|++++|...+++.|+|
T Consensus 153 KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~ 192 (377)
T KOG2805|consen 153 KDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFP 192 (377)
T ss_pred CCceeEeecccHHHHHhhhccCcccCHHHHHHHHHhcCCc
Confidence 000111000000 001236799999999999999999998
No 451
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.43 E-value=4.2e-06 Score=89.76 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=79.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.+||.++|..|+|||||+|.|+.......... .+.......+..++.........++
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~-----------------------~~~~~~~~~~~~~i~~~~~~l~e~~ 60 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS-----------------------IPPPSASISRTLEIEERTVELEENG 60 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS--------------------------------S------SCEEEEEEEEEEEETC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc-----------------------ccccccccccccceeeEEEEeccCC
Confidence 47999999999999999999997432211000 0000011112233333333333333
Q ss_pred --ceEEEeeChhhH-------------HHHHHH--------Hhh----c--ccCCEEEEEEeCCCCCCCCCCCchhhHHH
Q psy3751 404 --RKFIIADTPGHE-------------QYTRNM--------ITG----A--STADAVIILIDASKIKFNPSVNLLTQTKR 454 (967)
Q Consensus 404 --~~~~liDtpG~~-------------~~~~~~--------~~~----~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~ 454 (967)
.+++++||||+. +|+..- ... . ...|++|++|+++. .++.+...+
T Consensus 61 ~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~------~~L~~~Di~ 134 (281)
T PF00735_consen 61 VKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG------HGLKPLDIE 134 (281)
T ss_dssp EEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS------SSS-HHHHH
T ss_pred cceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC------ccchHHHHH
Confidence 468899999922 122211 110 1 34689999999874 156665555
Q ss_pred HHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCC
Q psy3751 455 HSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF 500 (967)
Q Consensus 455 ~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~ 500 (967)
.+..+. ..-++|-|+.|.|... .+.....+..+..-++..++
T Consensus 135 ~mk~Ls--~~vNvIPvIaKaD~lt--~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 135 FMKRLS--KRVNVIPVIAKADTLT--PEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp HHHHHT--TTSEEEEEESTGGGS---HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhc--ccccEEeEEecccccC--HHHHHHHHHHHHHHHHHcCc
Confidence 554433 3345899999999985 44566777777777777766
No 452
>KOG3886|consensus
Probab=98.43 E-value=7e-07 Score=87.93 Aligned_cols=152 Identities=16% Similarity=0.259 Sum_probs=98.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
..||.++|.+|||||++=..+.... +.+ ..+..|-|||+.+.+..+-+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny----------~a~----------------------D~~rlg~tidveHsh~RflG 51 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANY----------IAR----------------------DTRRLGATIDVEHSHVRFLG 51 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhh----------hhh----------------------hhhccCCcceeeehhhhhhh
Confidence 3579999999999999877666410 011 12335789998887776644
Q ss_pred -ceEEEeeChhhHHHHHHHHh-----hcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCc
Q psy3751 404 -RKFIIADTPGHEQYTRNMIT-----GASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDL 476 (967)
Q Consensus 404 -~~~~liDtpG~~~~~~~~~~-----~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~ 476 (967)
--++++|+.|++.|+++..+ -.+..++.++|+|+...+++.+... ....+..+.+ .-.-++++.+.|||+
T Consensus 52 nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~---yqk~Le~ll~~SP~AkiF~l~hKmDL 128 (295)
T KOG3886|consen 52 NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHY---YQKCLEALLQNSPEAKIFCLLHKMDL 128 (295)
T ss_pred hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHH---HHHHHHHHHhcCCcceEEEEEeechh
Confidence 67789999999999888766 3578999999999998555544322 1122222211 122347888999999
Q ss_pred cCcC--HHHHHHHHHHHHHHHHHcCCccceEEeccccCC
Q psy3751 477 INYN--QIFYKRIVYAYKKFAEDIHFQNINTIPISALNG 513 (967)
Q Consensus 477 ~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g 513 (967)
+..+ +..++.-+..+..+-..++ ...+|+|.+..
T Consensus 129 v~~d~r~~if~~r~~~l~~~s~~~~---~~~f~TsiwDe 164 (295)
T KOG3886|consen 129 VQEDARELIFQRRKEDLRRLSRPLE---CKCFPTSIWDE 164 (295)
T ss_pred cccchHHHHHHHHHHHHHHhccccc---ccccccchhhH
Confidence 8643 4445555555555444333 35677776543
No 453
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.41 E-value=2.2e-06 Score=89.83 Aligned_cols=167 Identities=12% Similarity=0.105 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCC-----CCeeEEEeeCCCCChhhHHHHHHHHH
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSR-----FPFPMVHIDTGHNFPEVISFRDNCIS 91 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~-----~~i~~v~idtg~~~pet~~~~~~~~~ 91 (967)
.+..++...+.|+.++++. ..++++.|||.||++++.|+.++++..+ +.+.++.+-.....+++.+.++.+++
T Consensus 18 ~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~ 97 (268)
T PRK00768 18 PEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALA 97 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHH
Confidence 3455566777788777665 6789999999999999999999876322 22334444333344667888999999
Q ss_pred HhCC-cEEEEecchhhhhccccc---CCCC-----cccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhcccccccc
Q psy3751 92 KLGE-TLIVRSVEDSIMKGTVRL---RKPN-----TDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFR 162 (967)
Q Consensus 92 ~~gi-~i~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~ 162 (967)
.+|+ ++.++.....+....... +... ...+.++|...++..+...+.-++-||.+ +|.. .-++.
T Consensus 98 ~lgi~~~~~i~I~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N~-sE~~----~Gy~T-- 170 (268)
T PRK00768 98 FIQPDRVLTVNIKPAVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDHA-AEAV----TGFFT-- 170 (268)
T ss_pred hcCCCeeEEEECHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCcc-cHHH----hCcee--
Confidence 9999 788887765433221101 1101 12234455555666666655434444443 3321 11111
Q ss_pred ccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 163 DKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 163 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
.++- ...-++||.++++.|||+..+..++|
T Consensus 171 -kyGD---------------------~~~d~~pi~~L~KteV~~La~~l~vP 200 (268)
T PRK00768 171 -KFGD---------------------GGADILPLFGLNKRQGRALLAALGAP 200 (268)
T ss_pred -ccCC---------------------ccccchhhcCCcHHHHHHHHHHhCCC
Confidence 1110 12458899999999999999999987
No 454
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=9.6e-07 Score=81.47 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=95.8
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhh----cccccC
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMK----GTVRLR 114 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~----~~~~~~ 114 (967)
++.+.|||||||+....++.++ +.++..|+++-|+.. +.+++++.++.+|+++++...+....+ .+...+
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl----gyev~LVTvnFGv~d--~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg 75 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL----GYEVELVTVNFGVLD--SWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDG 75 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHh----CCCcEEEEEEecccc--chhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcC
Confidence 3578999999999999999998 778999999999864 668899999999999999988764432 233444
Q ss_pred CCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhH---hhhccccccccccCCCCCCCCCCccccccccccCCCCCce
Q psy3751 115 KPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEK---ARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENI 191 (967)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~---~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 191 (967)
.|.+.. .+.....+.-.+.. .++.++.|+|+||-. .|+...-++ . ..++-
T Consensus 76 ~P~~aI-q~iH~~alE~~A~r-~~~~iaDGTRRDDrvP~ls~~~~qSLE--d-----------------------R~nv~ 128 (198)
T COG2117 76 YPRNAI-QYIHEMALEALASR-EVDRIADGTRRDDRVPKLSRSEAQSLE--D-----------------------RLNVQ 128 (198)
T ss_pred CCchHH-HHHHHHHHHHHHHH-HHHHHcCCCcccccCccccHHHHhhHH--H-----------------------hcCce
Confidence 543322 22333333333333 678999999999753 222211111 1 12346
Q ss_pred EEeeCCCCcHHHHHHHHHH
Q psy3751 192 RVFPISNWTELDIWQYIER 210 (967)
Q Consensus 192 ~i~Pl~~wt~~dV~~yi~~ 210 (967)
.++||..+..+-|......
T Consensus 129 Yi~PL~G~G~kti~~Lv~~ 147 (198)
T COG2117 129 YIRPLLGLGYKTIRRLVSA 147 (198)
T ss_pred eecccccccHHHHHHHHHH
Confidence 7899999988888776543
No 455
>KOG1707|consensus
Probab=98.41 E-value=8e-07 Score=99.19 Aligned_cols=155 Identities=18% Similarity=0.119 Sum_probs=97.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....++|+++|..|+|||||+-+|+.+.-.- .+-..+ .-++|- ..+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~-------------------------~VP~rl-----~~i~IP---adv 51 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD-------------------------AVPRRL-----PRILIP---ADV 51 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccc-------------------------cccccC-----CccccC---Ccc
Confidence 44577899999999999999999999732110 000011 123332 223
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC---C-CeEEEEEecCC
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR---I-KHIIIAVNKMD 475 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~---~-~~iivviNK~D 475 (967)
.-+.....++||+-.++-.......+++||++++|.+.+++. .+..-...++-+.++++ . .|+|+|.||+|
T Consensus 52 tPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~-----T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d 126 (625)
T KOG1707|consen 52 TPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES-----TVDRISTKWLPLIRQLFGDYHETPVILVGNKSD 126 (625)
T ss_pred CcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH-----HhhhhhhhhhhhhhcccCCCccCCEEEEeeccC
Confidence 333445889999876665556677789999999999887621 23333444455555555 2 34999999999
Q ss_pred ccCcCHH----HHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 476 LINYNQI----FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 476 ~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
....... ....+.+++.++- .-|.+||++-.|+.++.
T Consensus 127 ~~~~~~~s~e~~~~pim~~f~EiE--------tciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 127 NGDNENNSDEVNTLPIMIAFAEIE--------TCIECSALTLANVSELF 167 (625)
T ss_pred CccccccchhHHHHHHHHHhHHHH--------HHHhhhhhhhhhhHhhh
Confidence 8765432 1222222222221 34778999999888764
No 456
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.41 E-value=1.1e-06 Score=74.26 Aligned_cols=65 Identities=40% Similarity=0.556 Sum_probs=57.3
Q ss_pred eEEEEEEEeeeecCCCEEEEec--CCcE---EEEEEEEeCccccceeecCCeEEEEEc--cccC-CCCCcccc
Q psy3751 568 RGYMGRIESGIIKKNDCLIVEP--SGKK---ATIKDIQMLNKSLDMAITGQSVTLIIK--EYLD-ISRGNMLV 632 (967)
Q Consensus 568 ~v~~G~v~~G~l~~g~~v~i~p--~~~~---~~V~~i~~~~~~v~~a~~G~~v~l~l~--~~~~-i~~G~vl~ 632 (967)
++++|||++|+|++||+|.+.| .+.+ .+|++|+.++....++.+|+.+++.+. +..+ +++||+|+
T Consensus 2 ~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 2 RVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred EEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 6899999999999999999976 3344 999999999999999999999998876 3667 89999985
No 457
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.40 E-value=1.8e-06 Score=89.32 Aligned_cols=179 Identities=22% Similarity=0.202 Sum_probs=91.3
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhc---cceeEeece
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESERE---QGITIDVAY 396 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~---~g~Ti~~~~ 396 (967)
...+...|+|.|.||+|||||+..|...... ....-.+-........||+++ +-|+..-.+- .|+-+-...
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~--~G~rVaVlAVDPSSp~TGGsi----LGDRiRM~~~~~~~~vFiRs~~ 120 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRE--RGHRVAVLAVDPSSPFTGGSI----LGDRIRMQRLAVDPGVFIRSSP 120 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHH--CCcEEEEEEECCCCCCCCccc----cccHhhHHhhccCCCeEEeecC
Confidence 3446678999999999999999999863200 000000000001112233333 2222222111 122111100
Q ss_pred ----------------eeeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH
Q psy3751 397 ----------------RYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH 460 (967)
Q Consensus 397 ----------------~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~ 460 (967)
.-++-.++.+.||.|-|--+---. -...+|..++|.-+.- +..++..-.-.+.++
T Consensus 121 srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~-----GD~~Q~iK~GimEia- 191 (323)
T COG1703 121 SRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGA-----GDDLQGIKAGIMEIA- 191 (323)
T ss_pred CCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCC-----CcHHHHHHhhhhhhh-
Confidence 012224678999999984322111 1355898888876554 112222222233333
Q ss_pred HcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHH---HHcCCccceEEeccccCCCccccccc
Q psy3751 461 LLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFA---EDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 461 ~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
=|+|+||+|..+. +..+.++...++... ...++ .+|++.+||.+|+|++++.+
T Consensus 192 ------Di~vINKaD~~~A-~~a~r~l~~al~~~~~~~~~~~W-~ppv~~t~A~~g~Gi~~L~~ 247 (323)
T COG1703 192 ------DIIVINKADRKGA-EKAARELRSALDLLREVWRENGW-RPPVVTTSALEGEGIDELWD 247 (323)
T ss_pred ------heeeEeccChhhH-HHHHHHHHHHHHhhcccccccCC-CCceeEeeeccCCCHHHHHH
Confidence 2678999996543 333333443333321 12233 56999999999999999643
No 458
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.38 E-value=3.4e-06 Score=87.08 Aligned_cols=131 Identities=17% Similarity=0.104 Sum_probs=84.6
Q ss_pred EEEEecChhHHHHHHHHHHhcCCCCCCee-EEEeeCCC----C-ChhhHHHHHHHHHHhCCcEEEEecchhhhhcccccC
Q psy3751 41 VLLFSGGKDSVVLLRLAEKAFRPSRFPFP-MVHIDTGH----N-FPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLR 114 (967)
Q Consensus 41 ~va~SGGKDS~vlL~l~~~~~~~~~~~i~-~v~idtg~----~-~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~ 114 (967)
+++|||||||+++++++.+. +.++. ++++++.. . .....+.++++++.+|+|++++.........
T Consensus 1 ~vl~SGGkDS~~al~~a~~~----G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~----- 71 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEE----GHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKE----- 71 (218)
T ss_pred CeeecCcHHHHHHHHHHHHc----CCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHH-----
Confidence 37899999999999999885 44664 55665431 1 1224588899999999999887654110000
Q ss_pred CCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEe
Q psy3751 115 KPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVF 194 (967)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~ 194 (967)
.+ . -...+.++.+ .|.+.+++|...++-.......+. . ..+...+.
T Consensus 72 ~~------~-l~~~l~~~~~-~g~~~vv~G~i~sd~~~~~~e~v~---~-----------------------~~gl~~~~ 117 (218)
T TIGR03679 72 VE------D-LKGALKELKR-EGVEGIVTGAIASRYQKSRIERIC---E-----------------------ELGLKVFA 117 (218)
T ss_pred HH------H-HHHHHHHHHH-cCCCEEEECCcccHhHHHHHHHHH---H-----------------------hCCCeEEe
Confidence 00 0 1122333333 499999999998865322211111 1 11245689
Q ss_pred eCCCCcHHHHHHHHHHcCCC
Q psy3751 195 PISNWTELDIWQYIEREKII 214 (967)
Q Consensus 195 Pl~~wt~~dV~~yi~~~~lp 214 (967)
||..|+.++++.=+...|+.
T Consensus 118 PLw~~~~~el~~~~~~~G~~ 137 (218)
T TIGR03679 118 PLWGRDQEEYLRELVERGFR 137 (218)
T ss_pred ehhcCCHHHHHHHHHHCCCE
Confidence 99999999999998888864
No 459
>KOG0393|consensus
Probab=98.36 E-value=4.5e-07 Score=89.59 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=96.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+++++||...+|||.|+-.++. +.++++...-+. |--...+..+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~---------------------------------~~fp~~yvPTVF-dnys~~v~V~ 48 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT---------------------------------NAFPEEYVPTVF-DNYSANVTVD 48 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc---------------------------------CcCcccccCeEE-ccceEEEEec
Confidence 357899999999999999876654 122222222221 1111223332
Q ss_pred -Cc--eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC-CCC-CCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 403 -KR--KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK-FNP-SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 403 -~~--~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~-~~~-~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
++ .+.+|||.|+++|-.-..-...++|+.|++++...+. |+. ...+.+..+.|. -++| +|+|.+|.|+-
T Consensus 49 dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-----p~vp-iiLVGtk~DLr 122 (198)
T KOG0393|consen 49 DGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-----PNVP-IILVGTKADLR 122 (198)
T ss_pred CCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-----CCCC-EEEEeehHHhh
Confidence 43 4679999999999663334678899999988877632 221 222334444333 2445 99999999998
Q ss_pred CcCHHHHHHH---------HHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRI---------VYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.. ...+.+ .++-..+.+++|. ..++..||++..|+.+.
T Consensus 123 ~d~-~~~~~l~~~~~~~Vt~~~g~~lA~~iga--~~y~EcSa~tq~~v~~v 170 (198)
T KOG0393|consen 123 DDP-STLEKLQRQGLEPVTYEQGLELAKEIGA--VKYLECSALTQKGVKEV 170 (198)
T ss_pred hCH-HHHHHHHhccCCcccHHHHHHHHHHhCc--ceeeeehhhhhCCcHHH
Confidence 432 111111 2334456666774 47899999999998875
No 460
>PRK05370 argininosuccinate synthase; Validated
Probab=98.35 E-value=4.6e-06 Score=91.92 Aligned_cols=151 Identities=12% Similarity=0.033 Sum_probs=105.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchhhhhcccc---
Q psy3751 37 CNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDSIMKGTVR--- 112 (967)
Q Consensus 37 ~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~~~~~~~~--- 112 (967)
.++++++||||-|+.|++..+++- +.++.++++|.|..-.+.++.+++-+..+|. +++++.....|.+....
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI~ 86 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAIQ 86 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHHH
Confidence 378999999999999999998875 5689999999996323456788888999998 79999888766643211
Q ss_pred -----------cCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccc-hhhHhhhccccccccccCCCCCCCCCCcccccc
Q psy3751 113 -----------LRKPNTDSRNAAQSITLLETIKEFKFDACIGGARR-DEEKARAKERIFSFRDKFGQWNPKSQRPELWNL 180 (967)
Q Consensus 113 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~-des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~ 180 (967)
.+.-.....+.+-...+.+.+++.|.++++=|-.. .-..-|..+.+.-.. |
T Consensus 87 anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~~aL~------------P----- 149 (447)
T PRK05370 87 CGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTN------------P----- 149 (447)
T ss_pred cCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHHHHHhC------------C-----
Confidence 01111222233445667888899999999877652 212234332211101 1
Q ss_pred ccccCCCCCceEEeeCCCC-------cHHHHHHHHHHcCCCCC
Q psy3751 181 YNTRVHPGENIRVFPISNW-------TELDIWQYIEREKIILP 216 (967)
Q Consensus 181 ~~~~~~~~~~~~i~Pl~~w-------t~~dV~~yi~~~~lp~~ 216 (967)
..-.+.|..+| +.+|-.+|+++||||+.
T Consensus 150 --------~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~ 184 (447)
T PRK05370 150 --------ELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYK 184 (447)
T ss_pred --------CCeEecchhhhhcccccCCHHHHHHHHHHcCCCCC
Confidence 13468999999 78999999999999986
No 461
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.35 E-value=9.1e-06 Score=86.78 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=92.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhh-hccceeEeeceee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESE-REQGITIDVAYRY 398 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e-~~~g~Ti~~~~~~ 398 (967)
++.-.++|.++|..|.||||++|.|++.. ..+. . ..+....+ ..+++.+......
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~-l~~~--------------~---------~~~~~~~~~~~~~~~i~~~~~~ 74 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTS-LVDE--------------T---------EIDDIRAEGTSPTLEIKITKAE 74 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhh-ccCC--------------C---------CccCcccccCCcceEEEeeeee
Confidence 44567899999999999999999999831 0000 0 00111111 3345555555555
Q ss_pred eecCC--ceEEEeeChhhHH-------------HHHHHHhh--------c-------ccCCEEEEEEeCCCCCCCCCCCc
Q psy3751 399 FNTPK--RKFIIADTPGHEQ-------------YTRNMITG--------A-------STADAVIILIDASKIKFNPSVNL 448 (967)
Q Consensus 399 ~~~~~--~~~~liDtpG~~~-------------~~~~~~~~--------~-------~~aD~~ilVvda~~~~~~~~~g~ 448 (967)
+.-++ .++++|||||.-+ |+...... - ...+++++.+..+. .|+
T Consensus 75 l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg------h~l 148 (373)
T COG5019 75 LEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG------HGL 148 (373)
T ss_pred eecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC------CCC
Confidence 55555 3578999999322 22222111 1 23689999998765 377
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCC
Q psy3751 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF 500 (967)
Q Consensus 449 ~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~ 500 (967)
.+...+.+..+. ....+|=||-|.|... .+.+...++.+.+.++..++
T Consensus 149 ~~~DIe~Mk~ls--~~vNlIPVI~KaD~lT--~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 149 KPLDIEAMKRLS--KRVNLIPVIAKADTLT--DDELAEFKERIREDLEQYNI 196 (373)
T ss_pred CHHHHHHHHHHh--cccCeeeeeeccccCC--HHHHHHHHHHHHHHHHHhCC
Confidence 777777765443 2334888999999885 34456777777777777665
No 462
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.34 E-value=5.1e-06 Score=69.23 Aligned_cols=60 Identities=32% Similarity=0.417 Sum_probs=48.4
Q ss_pred EEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEccccCCCCCccc
Q psy3751 569 GYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGNML 631 (967)
Q Consensus 569 v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~G~vl 631 (967)
++.|+|..|++++|..| .+..-.+|+|||.+++++++|.+|+.|++.+.+..+++.||+|
T Consensus 20 ~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~~i~eGDiL 79 (81)
T PF14578_consen 20 AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPTQIKEGDIL 79 (81)
T ss_dssp EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET--TB-TT-EE
T ss_pred eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCccCCCCCEE
Confidence 46679999999999999 3335689999999999999999999999999987789999987
No 463
>KOG0448|consensus
Probab=98.27 E-value=9e-06 Score=92.49 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=63.0
Q ss_pred eEEEeeChhh---HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 405 KFIIADTPGH---EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 405 ~~~liDtpG~---~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
.+.++|.||. ..+..-...-.-.+|+.|||+.|.. ..+...++.+..+ .-+.|+++++.||+|.....+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn-------tlt~sek~Ff~~v-s~~KpniFIlnnkwDasase~ 278 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN-------TLTLSEKQFFHKV-SEEKPNIFILNNKWDASASEP 278 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc-------HhHHHHHHHHHHh-hccCCcEEEEechhhhhcccH
Confidence 5889999993 3333434444578999999999987 4444344444333 344778899999999987656
Q ss_pred HHHHHHHHHHHHHHHHcCCc-----cceEEeccccCC
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQ-----NINTIPISALNG 513 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~-----~~~ii~iSa~~g 513 (967)
+-.+.+..++. .++.. .-.+++|||+.-
T Consensus 279 ec~e~V~~Qi~----eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 279 ECKEDVLKQIH----ELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred HHHHHHHHHHH----hcCcccHhhhcCeeEEEeccch
Confidence 55556666544 33321 236788996543
No 464
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.20 E-value=8.8e-06 Score=70.42 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=65.2
Q ss_pred CCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCcc----ccceeecCCeEEEEEcc
Q psy3751 546 KKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNK----SLDMAITGQSVTLIIKE 621 (967)
Q Consensus 546 ~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~----~v~~a~~G~~v~l~l~~ 621 (967)
+.||.+.|..+.+.+..| +..++||.+|+|+.||.|.... +.+.+|.+|..++. ++++|.|||++++...
T Consensus 1 ~~p~~~~Vfkv~~d~~~G----~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl- 74 (85)
T cd03690 1 ESELSGTVFKIERDDKGE----RLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGL- 74 (85)
T ss_pred CCCcEEEEEEeEECCCCC----eEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECC-
Confidence 368888899998888766 8899999999999999998765 55567778775543 6899999999998764
Q ss_pred ccCCCCCccccc
Q psy3751 622 YLDISRGNMLVS 633 (967)
Q Consensus 622 ~~~i~~G~vl~~ 633 (967)
.++..||+|++
T Consensus 75 -~~~~~Gdtl~~ 85 (85)
T cd03690 75 -KGLRVGDVLGD 85 (85)
T ss_pred -CCCcCccccCC
Confidence 34778998863
No 465
>KOG1547|consensus
Probab=98.19 E-value=2.1e-05 Score=77.97 Aligned_cols=143 Identities=20% Similarity=0.205 Sum_probs=81.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhcc-ceeEeeceeeeec
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ-GITIDVAYRYFNT 401 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~-g~Ti~~~~~~~~~ 401 (967)
=.+||.+||..|.|||||+|.|... .+.+.+. +...+|... .+.+......++-
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s----------~v~~~s~---------------~~~~~~p~pkT~eik~~thvieE 99 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKS----------HVSDSSS---------------SDNSAEPIPKTTEIKSITHVIEE 99 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHH----------HHhhccC---------------CCcccCcccceEEEEeeeeeeee
Confidence 4589999999999999999999861 1111100 111111111 2223333333444
Q ss_pred CC--ceEEEeeChh---------------------hHHHHHHHHhhc-------ccCCEEEEEEeCCCCCCCCCCCchhh
Q psy3751 402 PK--RKFIIADTPG---------------------HEQYTRNMITGA-------STADAVIILIDASKIKFNPSVNLLTQ 451 (967)
Q Consensus 402 ~~--~~~~liDtpG---------------------~~~~~~~~~~~~-------~~aD~~ilVvda~~~~~~~~~g~~~~ 451 (967)
++ .++++||||| |++|++.-+... ...+.+++.|.++-. ...+-
T Consensus 100 ~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh------sLrpl 173 (336)
T KOG1547|consen 100 KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH------SLRPL 173 (336)
T ss_pred cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC------ccCcc
Confidence 44 3688999999 344554433332 236788999988752 34455
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCC
Q psy3751 452 TKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF 500 (967)
Q Consensus 452 t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~ 500 (967)
..+.+.-+. .+-.+|-|+-|.|...-.+ -.+.++.+++-+...++
T Consensus 174 DieflkrLt--~vvNvvPVIakaDtlTleE--r~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 174 DIEFLKRLT--EVVNVVPVIAKADTLTLEE--RSAFKQRIRKELEKHGI 218 (336)
T ss_pred cHHHHHHHh--hhheeeeeEeecccccHHH--HHHHHHHHHHHHHhcCc
Confidence 556554332 2334777899999764221 23344455555555565
No 466
>PRK13981 NAD synthetase; Provisional
Probab=98.17 E-value=1.6e-05 Score=94.60 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET 96 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~ 96 (967)
.+...+.....|+++++.. ++++|++|||.||++++.|+.+++.+ .++.++++.+....+++++.++++++.+|++
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--~~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~ 337 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--ERVRAVMMPSRYTSEESLDDAAALAKNLGVR 337 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--CcEEEEECCCCCCCHHHHHHHHHHHHHcCCe
Confidence 4555666666777776665 78899999999999999999888652 2588888887777778899999999999999
Q ss_pred EEEEecchhhhhccc---c---cCCCCcc---cchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCC
Q psy3751 97 LIVRSVEDSIMKGTV---R---LRKPNTD---SRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQ 167 (967)
Q Consensus 97 i~~~~~~~~~~~~~~---~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~ 167 (967)
++++.....+..... . ...+.-. ...++|...+...+..++.-++-||.+.+-. .-.+....+
T Consensus 338 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~sE~~-----~Gy~t~~GD--- 409 (540)
T PRK13981 338 YDIIPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEMA-----VGYATLYGD--- 409 (540)
T ss_pred EEEEECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCccCHHH-----cCCeEecCC---
Confidence 999887764432211 1 0111111 1234555567777777777666677654421 111111111
Q ss_pred CCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcC
Q psy3751 168 WNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREK 212 (967)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~ 212 (967)
...-++||.+.++.+|++.++..+
T Consensus 410 ---------------------~~~~~~pi~~l~K~~v~~la~~~~ 433 (540)
T PRK13981 410 ---------------------MAGGFAPIKDVYKTLVYRLCRWRN 433 (540)
T ss_pred ---------------------cccCccccCCCCHHHHHHHHHHHH
Confidence 113478999999999999999876
No 467
>KOG1673|consensus
Probab=98.17 E-value=1.1e-05 Score=74.31 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=106.3
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.+.-.++|+++|.+..|||||+-...+... .+|...-..++..-..+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~---------------------------------de~~~q~~GvN~mdkt~ 62 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEY---------------------------------DEEYTQTLGVNFMDKTV 62 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchh---------------------------------HHHHHHHhCccceeeEE
Confidence 344568999999999999999988776211 11111111111111122
Q ss_pred ecC--CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCe-EEEEEecCCc
Q psy3751 400 NTP--KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKH-IIIAVNKMDL 476 (967)
Q Consensus 400 ~~~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~-iivviNK~D~ 476 (967)
... ...+.+||..|.++|....--+...+-++++++|-+.. .-....++....++.++..- -|+|.+|-|.
T Consensus 63 ~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r------~TLnSi~~WY~QAr~~NktAiPilvGTKyD~ 136 (205)
T KOG1673|consen 63 SIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRR------STLNSIKEWYRQARGLNKTAIPILVGTKYDL 136 (205)
T ss_pred EecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCch------HHHHHHHHHHHHHhccCCccceEEeccchHh
Confidence 222 34578999999999988777777888899999999872 22344567777777766311 2678999985
Q ss_pred c-CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 477 I-NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 477 ~-~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
. +-+.+.-..+..+.+.+.+-++. +.++.|+-...|+....
T Consensus 137 fi~lp~e~Q~~I~~qar~YAk~mnA---sL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 137 FIDLPPELQETISRQARKYAKVMNA---SLFFCSTSHSINVQKIF 178 (205)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhCC---cEEEeeccccccHHHHH
Confidence 3 33444456677777777777664 88999999999998753
No 468
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=98.17 E-value=7e-06 Score=90.23 Aligned_cols=149 Identities=22% Similarity=0.279 Sum_probs=91.8
Q ss_pred EEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchhhhhccc--------
Q psy3751 41 VLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDSIMKGTV-------- 111 (967)
Q Consensus 41 ~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~~~~~~~-------- 111 (967)
++|||||-|+++++..+.+.. +.++.++++|+|.. .+..+.+++-+..+|. +++++.....|.+...
T Consensus 1 VLAySGGLDTS~~l~~L~e~~---~~~Via~~aDlGq~-~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEG---GYEVIAVTADLGQP-DEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTT---TEEEEEEEEESSST--S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT-
T ss_pred CeeeCCChHHHHHHHHHHhhc---CceEEEEEEECCCc-HHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHH
Confidence 589999999999999998873 25899999999983 3677888888999997 9999998887764321
Q ss_pred ---ccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhh-HhhhccccccccccCCCCCCCCCCccccccccccCCC
Q psy3751 112 ---RLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEE-KARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHP 187 (967)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des-~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 187 (967)
..++-....-+.+--..+.+.+++.|.++++=|-..-.. ..|..+.+...+.
T Consensus 77 ~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~P------------------------ 132 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRALAP------------------------ 132 (388)
T ss_dssp -BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHHST------------------------
T ss_pred HhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHhCc------------------------
Confidence 111112222333444557788888899999776643222 3444332222111
Q ss_pred CCceEEeeCCCC--cHHHHHHHHHHcCCCCCCc
Q psy3751 188 GENIRVFPISNW--TELDIWQYIEREKIILPSL 218 (967)
Q Consensus 188 ~~~~~i~Pl~~w--t~~dV~~yi~~~~lp~~~l 218 (967)
..-.+.|..+| +.+|-.+|++++|||+..-
T Consensus 133 -~l~viaP~Rd~~~~R~~~i~ya~~~gIpv~~~ 164 (388)
T PF00764_consen 133 -ELKVIAPWRDWEFSREEEIEYAKKHGIPVPVT 164 (388)
T ss_dssp -TSEEE-GGGHHHHHHHHHHHHHHHTT----SS
T ss_pred -CCcEecccchhhhhHHHHHHHHHHcCCCCCCC
Confidence 13467899877 7899999999999998753
No 469
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.14 E-value=1.8e-05 Score=68.74 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=62.3
Q ss_pred eeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc---cccceeecCCeEEEE--EccccC
Q psy3751 550 RFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN---KSLDMAITGQSVTLI--IKEYLD 624 (967)
Q Consensus 550 ~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~---~~v~~a~~G~~v~l~--l~~~~~ 624 (967)
.+.+..+.+.+..| ++..+||.+|+|+.||.|.+...+++.+|..|..++ .+++++.|||++.+. +.+..+
T Consensus 2 ~~~Vfk~~~d~~~G----~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~~~l~~ 77 (86)
T cd03699 2 RALIFDSWYDPYRG----VIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKD 77 (86)
T ss_pred EEEEEEeeccCCCC----EEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEEccccccCc
Confidence 45666777766666 889999999999999999987777677777777553 378999999999985 223356
Q ss_pred CCCCccccc
Q psy3751 625 ISRGNMLVS 633 (967)
Q Consensus 625 i~~G~vl~~ 633 (967)
+..||+|+.
T Consensus 78 ~~~Gdtl~~ 86 (86)
T cd03699 78 ARVGDTITL 86 (86)
T ss_pred cccccEeeC
Confidence 888999863
No 470
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.12 E-value=1.7e-05 Score=68.53 Aligned_cols=75 Identities=19% Similarity=0.136 Sum_probs=59.0
Q ss_pred eEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeecCCeEEEEEccccCCCC
Q psy3751 552 PVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIKEYLDISR 627 (967)
Q Consensus 552 ~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~~~~i~~ 627 (967)
.+.++.+.+..| ++..+||.+|+|++||.|.+...+.+.+|.+|...+ .+++++.|||++.+..- .+++.
T Consensus 4 ~Vfk~~~d~~~G----~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~--~~~~~ 77 (83)
T cd04088 4 LVFKTIHDPFVG----KLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGL--KDTAT 77 (83)
T ss_pred EEEEcccCCCCc----eEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECC--CCCcc
Confidence 345555555445 788999999999999999998877778888887543 36899999999999543 34778
Q ss_pred Ccccc
Q psy3751 628 GNMLV 632 (967)
Q Consensus 628 G~vl~ 632 (967)
||+|+
T Consensus 78 Gdtl~ 82 (83)
T cd04088 78 GDTLC 82 (83)
T ss_pred CCEee
Confidence 99886
No 471
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.12 E-value=1.5e-05 Score=68.77 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=59.1
Q ss_pred eEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeecCCeEEEEEccccCCCC
Q psy3751 552 PVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIKEYLDISR 627 (967)
Q Consensus 552 ~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~~~~i~~ 627 (967)
.|.++.+.+..| ++..+||.+|+|++||.|.+...+++.+|..|...+ .++++|.|||++++... .+++.
T Consensus 4 ~VfK~~~d~~~g----~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl--~~~~~ 77 (83)
T cd04092 4 LAFKVVHDPQRG----PLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGL--KQTRT 77 (83)
T ss_pred EEEecccCCCCC----eEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECC--CCccc
Confidence 455555555544 788999999999999999988777777888876553 47899999999998643 45788
Q ss_pred Cccccc
Q psy3751 628 GNMLVS 633 (967)
Q Consensus 628 G~vl~~ 633 (967)
||+|+.
T Consensus 78 Gdtl~~ 83 (83)
T cd04092 78 GDTLVT 83 (83)
T ss_pred CCEEeC
Confidence 999863
No 472
>KOG1954|consensus
Probab=98.12 E-value=2e-05 Score=82.97 Aligned_cols=135 Identities=24% Similarity=0.247 Sum_probs=87.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeece----eee--
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAY----RYF-- 399 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~----~~~-- 399 (967)
=|.++|+-..||||+++.|+...- .+.+.|-.-..-.+..+|.-..++...|.+.-+.. ...
T Consensus 60 mill~GqyStGKTtfi~yLle~dy------------pg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~ 127 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDY------------PGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNK 127 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCC------------CccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhh
Confidence 388999999999999999997321 01122222222234455655566666666553321 110
Q ss_pred ------------ecCC---ceEEEeeChhhH-----------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHH
Q psy3751 400 ------------NTPK---RKFIIADTPGHE-----------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK 453 (967)
Q Consensus 400 ------------~~~~---~~~~liDtpG~~-----------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~ 453 (967)
...+ .+++++||||.- +|..-..-.+..+|.++|++|+.. ..+...+.
T Consensus 128 FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hK------LDIsdEf~ 201 (532)
T KOG1954|consen 128 FGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHK------LDISDEFK 201 (532)
T ss_pred hHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhh------ccccHHHH
Confidence 0111 468999999932 354444455688999999999987 25566777
Q ss_pred HHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 454 RHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 454 ~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
+.+..++-..-+ +=||+||.|.++.
T Consensus 202 ~vi~aLkG~Edk-iRVVLNKADqVdt 226 (532)
T KOG1954|consen 202 RVIDALKGHEDK-IRVVLNKADQVDT 226 (532)
T ss_pred HHHHHhhCCcce-eEEEeccccccCH
Confidence 777766544434 7889999999963
No 473
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.12 E-value=3.7e-05 Score=80.56 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCC--CCCeeEEEeeCCCCChhhHHHHHHHHHHhC
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPS--RFPFPMVHIDTGHNFPEVISFRDNCISKLG 94 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~--~~~i~~v~idtg~~~pet~~~~~~~~~~~g 94 (967)
+++..+...+.++..++.. ++++++.|||-||++++.|+.+++.+. ..++.++....+.-.+.+.+-++.+++.+|
T Consensus 5 ~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~lg 84 (268)
T COG0171 5 LEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALG 84 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHhC
Confidence 4566667777787776644 789999999999999999999998751 123667777666324668888999999999
Q ss_pred CcEEEEecchhhhhccc---c-c-C-----CCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhcccccccccc
Q psy3751 95 ETLIVRSVEDSIMKGTV---R-L-R-----KPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDK 164 (967)
Q Consensus 95 i~i~~~~~~~~~~~~~~---~-~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~ 164 (967)
+....+...+....... . . + ...-....+.|...+...+.+++.-++=||++.. -. ..+...
T Consensus 85 ~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn~sE-~~-------~Gy~Tk 156 (268)
T COG0171 85 IDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGNKSE-LA-------LGYFTK 156 (268)
T ss_pred CceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCcHHH-Hh-------cCceec
Confidence 99877766654332100 0 0 0 0111234456666677777776654444455433 11 111111
Q ss_pred CCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 165 FGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 165 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
+|- +..-++||.+.++.+|++.++..++|-.-+.
T Consensus 157 yGD---------------------g~~d~~Pi~~L~KtqV~~La~~l~ipe~I~~ 190 (268)
T COG0171 157 YGD---------------------GAVDINPIADLYKTQVYALARHLGIPEEILK 190 (268)
T ss_pred ccC---------------------cccChhhhcCCcHHHHHHHHHHcCCCHHHhc
Confidence 111 1235889999999999999999898766555
No 474
>KOG3883|consensus
Probab=98.11 E-value=6.8e-05 Score=69.06 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=88.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeE-eeceee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITI-DVAYRY 398 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti-~~~~~~ 398 (967)
...+..+|+++|.-++|||.++.+|++....+... .--|+ |+-...
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e---------------------------------~~pTiEDiY~~s 51 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE---------------------------------LHPTIEDIYVAS 51 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCc---------------------------------cccchhhheeEe
Confidence 34567899999999999999999999843322110 01122 122233
Q ss_pred eecCC---ceEEEeeChhhHHHHHHHHh-hcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEec
Q psy3751 399 FNTPK---RKFIIADTPGHEQYTRNMIT-GASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNK 473 (967)
Q Consensus 399 ~~~~~---~~~~liDtpG~~~~~~~~~~-~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK 473 (967)
++++. ..+.|.||.|...+..+.-+ .++-+|+-+||.|..+.+. +......+..+..-+. -.++ ++|..||
T Consensus 52 vet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS---f~rv~llKk~Idk~KdKKEvp-iVVLaN~ 127 (198)
T KOG3883|consen 52 VETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES---FQRVELLKKEIDKHKDKKEVP-IVVLANK 127 (198)
T ss_pred eecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH---HHHHHHHHHHHhhcccccccc-EEEEech
Confidence 44432 46889999998877444433 4577999999999987211 0111111111111111 1234 8899999
Q ss_pred CCccCcCHHHHHHHHHHHH-HHHHHcCCccceEEeccccCCCcccc
Q psy3751 474 MDLINYNQIFYKRIVYAYK-KFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.|+.+..+. ..+.. ...+. +.+....++|.....+.+
T Consensus 128 rdr~~p~~v-----d~d~A~~Wa~r---Ekvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 128 RDRAEPREV-----DMDVAQIWAKR---EKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred hhcccchhc-----CHHHHHHHHhh---hheeEEEEEeccchhhhh
Confidence 999753321 11111 11211 235678888888776665
No 475
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.09 E-value=4.5e-06 Score=82.13 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHh
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+++|.+|+|||||+|+|.+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 46899999999999999999987
No 476
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.09 E-value=3.8e-06 Score=83.34 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=40.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++++++|.+|+|||||+|+|++.... ......|+|.+.....+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~--------------------------------~~~~~pg~T~~~~~~~~-- 160 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRAC--------------------------------NVGATPGVTKSMQEVHL-- 160 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccc--------------------------------eecCCCCeEcceEEEEe--
Confidence 34588999999999999999999972111 11223577776544433
Q ss_pred CCceEEEeeChh
Q psy3751 402 PKRKFIIADTPG 413 (967)
Q Consensus 402 ~~~~~~liDtpG 413 (967)
+..+.++||||
T Consensus 161 -~~~~~l~DtPG 171 (172)
T cd04178 161 -DKKVKLLDSPG 171 (172)
T ss_pred -CCCEEEEECcC
Confidence 24689999999
No 477
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.07 E-value=2.6e-05 Score=84.27 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=85.4
Q ss_pred HHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhh
Q psy3751 29 IMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMK 108 (967)
Q Consensus 29 ~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~ 108 (967)
.++..+.....+.+.+|||.||++++.++.+.... ++.+++++.+....+..++++++++++|++++.+........
T Consensus 7 av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~~---~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~~~~~ 83 (269)
T cd01991 7 AVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLPE---PVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFTPADLL 83 (269)
T ss_pred HHHHHhccCCceEEeecccHHHHHHHHHHHHhhCC---CCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcCHHHHH
Confidence 34444556677889999999999999999887432 367777777655444578999999999999998876543221
Q ss_pred ccc----ccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhh
Q psy3751 109 GTV----RLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEE 150 (967)
Q Consensus 109 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des 150 (967)
... .....+...|.......+.+.+.+++..++++|+-.||-
T Consensus 84 ~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Del 129 (269)
T cd01991 84 AALPDVIWELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADEL 129 (269)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhCCEEEEecCCcccc
Confidence 111 111233455555666778888888888999999999985
No 478
>KOG1487|consensus
Probab=98.04 E-value=1e-05 Score=81.21 Aligned_cols=87 Identities=23% Similarity=0.214 Sum_probs=59.6
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....-++.++|.|.+|||||+..|++....+ .+.. +.|...-.....
T Consensus 56 ktg~a~vg~vgFPSvGksTl~~~l~g~~s~v-------------------asye--------------fttl~~vpG~~~ 102 (358)
T KOG1487|consen 56 KTGDARVGFVGFPSVGKSTLLSKLTGTFSEV-------------------AAYE--------------FTTLTTVPGVIR 102 (358)
T ss_pred eecceeeeEEecCccchhhhhhhhcCCCCcc-------------------cccc--------------ceeEEEecceEe
Confidence 3344589999999999999999998732222 0111 122222222355
Q ss_pred cCCceEEEeeChhhHH-------HHHHHHhhcccCCEEEEEEeCCCC
Q psy3751 401 TPKRKFIIADTPGHEQ-------YTRNMITGASTADAVIILIDASKI 440 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~~ 440 (967)
+++-++.+.|.||.-+ --++++..++.|+++++|.|+..+
T Consensus 103 y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 103 YKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred ccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 6778899999999432 235567778899999999999874
No 479
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.02 E-value=6.3e-05 Score=82.20 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=55.1
Q ss_pred CCceEEEeeChhhHH----HHH---HHHhhc-----ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEE
Q psy3751 402 PKRKFIIADTPGHEQ----YTR---NMITGA-----STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIII 469 (967)
Q Consensus 402 ~~~~~~liDtpG~~~----~~~---~~~~~~-----~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iiv 469 (967)
.++.+.||||||... .+. .+.+.+ ..++..+||+||+. +..... +........++. -+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~-------g~~~~~-~a~~f~~~~~~~--gi 264 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT-------GQNALS-QAKAFHEAVGLT--GI 264 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-------ChHHHH-HHHHHHhhCCCC--EE
Confidence 467899999999422 222 222221 35788999999997 322111 112222234444 56
Q ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 470 AVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 470 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+||+|....-. .+.+ ++..++. |+.+++ +|++++++.
T Consensus 265 IlTKlD~t~~~G----~~l~----~~~~~~~---Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 265 ILTKLDGTAKGG----VVFA----IADELGI---PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EEECCCCCCCcc----HHHH----HHHHHCC---CEEEEe--CCCChhhCc
Confidence 799999664322 2222 2334444 888888 888887653
No 480
>KOG2655|consensus
Probab=98.01 E-value=7.8e-05 Score=80.56 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=86.7
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
++.-.+++.++|..|.|||||+|.|+...- .. ...............++......+
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l----------~~--------------~~~~~~~~~~~~~t~~i~~~~~~i 72 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDL----------SG--------------NREVPGASERIKETVEIESTKVEI 72 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhc----------cC--------------CcccCCcccCccccceeeeeeeee
Confidence 334568999999999999999999987310 00 000011112222233444444444
Q ss_pred ecCC--ceEEEeeChhhHH-------------HHHHHHh------------hc--ccCCEEEEEEeCCCCCCCCCCCchh
Q psy3751 400 NTPK--RKFIIADTPGHEQ-------------YTRNMIT------------GA--STADAVIILIDASKIKFNPSVNLLT 450 (967)
Q Consensus 400 ~~~~--~~~~liDtpG~~~-------------~~~~~~~------------~~--~~aD~~ilVvda~~~~~~~~~g~~~ 450 (967)
+-++ .+++++||||..| |+..... .+ ...+++++.|..+. .|+.+
T Consensus 73 ee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g------hgL~p 146 (366)
T KOG2655|consen 73 EENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG------HGLKP 146 (366)
T ss_pred cCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC------CCCcH
Confidence 4444 3578999999332 2222111 11 25789999998765 26777
Q ss_pred hHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCC
Q psy3751 451 QTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF 500 (967)
Q Consensus 451 ~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~ 500 (967)
...+.+..+.. .+. +|-||-|.|....+ .....+..+.+.++..++
T Consensus 147 ~Di~~Mk~l~~-~vN-iIPVI~KaD~lT~~--El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 147 LDIEFMKKLSK-KVN-LIPVIAKADTLTKD--ELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred hhHHHHHHHhc-ccc-ccceeeccccCCHH--HHHHHHHHHHHHHHHcCc
Confidence 77776654432 233 77789999988543 345566666666655554
No 481
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.99 E-value=2.5e-05 Score=76.69 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=49.7
Q ss_pred cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccce
Q psy3751 425 ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNIN 504 (967)
Q Consensus 425 ~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 504 (967)
+..+|++++|+|+.+ ....+..+....+...+.| +++|+||+|+.+. ..... ...+.+..+ .+
T Consensus 10 ~~~aD~vl~V~D~~~-------~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~--~~~~~----~~~~~~~~~---~~ 72 (156)
T cd01859 10 IKESDVVLEVLDARD-------PELTRSRKLERYVLELGKK-LLIVLNKADLVPK--EVLEK----WKSIKESEG---IP 72 (156)
T ss_pred HhhCCEEEEEeeCCC-------CcccCCHHHHHHHHhCCCc-EEEEEEhHHhCCH--HHHHH----HHHHHHhCC---Cc
Confidence 456999999999987 2222333333334445655 8999999999742 11111 112233333 37
Q ss_pred EEeccccCCCccccc
Q psy3751 505 TIPISALNGDNIISA 519 (967)
Q Consensus 505 ii~iSa~~g~gi~~l 519 (967)
++++||++|.|++++
T Consensus 73 ~~~iSa~~~~gi~~L 87 (156)
T cd01859 73 VVYVSAKERLGTKIL 87 (156)
T ss_pred EEEEEccccccHHHH
Confidence 899999999999984
No 482
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=97.98 E-value=4.3e-05 Score=65.99 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=52.9
Q ss_pred eEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeecCCeEEEEEccccCCCCCccccc
Q psy3751 568 RGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIKEYLDISRGNMLVS 633 (967)
Q Consensus 568 ~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~ 633 (967)
+..++||.+|+|+.||.|.....+++.+|..|...+ .++++|.|||++++... .++..||+|++
T Consensus 17 kla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl--~~~~~Gdtl~~ 84 (85)
T cd03689 17 RIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNP--GNFQIGDTLTE 84 (85)
T ss_pred EEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECC--CCccccCEeeC
Confidence 789999999999999999887777677787776543 37899999999999863 34778999974
No 483
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.98 E-value=9.7e-05 Score=75.01 Aligned_cols=94 Identities=14% Similarity=0.207 Sum_probs=55.4
Q ss_pred CCceEEEeeChhhH----HHHHHH---HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 402 PKRKFIIADTPGHE----QYTRNM---ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 402 ~~~~~~liDtpG~~----~~~~~~---~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
++..+.||||||.. ..+..+ ... ...+-++||+|++. +.. ...........+++..+| ++|+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~-~~~~~~~LVlsa~~-------~~~-~~~~~~~~~~~~~~~~lI--lTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEA-LNPDEVHLVLSATM-------GQE-DLEQALAFYEAFGIDGLI--LTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHH-HSSSEEEEEEEGGG-------GGH-HHHHHHHHHHHSSTCEEE--EEST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhh-cCCccceEEEeccc-------ChH-HHHHHHHHhhcccCceEE--EEee
Confidence 34679999999932 222222 222 36789999999987 332 233444555667777544 8999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|....-.. + -.++...+. |+-.+| +|++++++
T Consensus 151 Det~~~G~----~----l~~~~~~~~---Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 151 DETARLGA----L----LSLAYESGL---PISYIT--TGQRVDDL 182 (196)
T ss_dssp TSSSTTHH----H----HHHHHHHTS---EEEEEE--SSSSTTGE
T ss_pred cCCCCccc----c----eeHHHHhCC---CeEEEE--CCCChhcC
Confidence 98764332 2 123334444 666665 67777543
No 484
>KOG3905|consensus
Probab=97.97 E-value=0.00011 Score=76.17 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=44.4
Q ss_pred cCCCeEEEEEecCCcc-------CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 462 LRIKHIIIAVNKMDLI-------NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 462 ~~~~~iivviNK~D~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
+|++ ++||++|+|.+ ++..+.|+.+...+++|.-++|- ..|.+|+++..|++-
T Consensus 221 lGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga---aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 221 LGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA---ALIYTSVKETKNIDL 280 (473)
T ss_pred CCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc---eeEEeecccccchHH
Confidence 4666 89999999984 35567788899999999888886 789999999999985
No 485
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.94 E-value=7.8e-05 Score=79.83 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=54.6
Q ss_pred CCceEEEeeChhhHH----HHHH---HHhhc-----ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEE
Q psy3751 402 PKRKFIIADTPGHEQ----YTRN---MITGA-----STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIII 469 (967)
Q Consensus 402 ~~~~~~liDtpG~~~----~~~~---~~~~~-----~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iiv 469 (967)
.++.+.||||||... .+.+ +.... ..+|..+||+|++. +... ........+..++. -+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~-------~~~~-~~~~~~f~~~~~~~--g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT-------GQNA-LEQAKVFNEAVGLT--GI 222 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-------CHHH-HHHHHHHHhhCCCC--EE
Confidence 467899999999432 2221 11221 23899999999976 3221 12222223345554 45
Q ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 470 AVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 470 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
++||+|....-.. +.+ +....+. |+.+++ +|++++++
T Consensus 223 IlTKlDe~~~~G~----~l~----~~~~~~~---Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 223 ILTKLDGTAKGGI----ILS----IAYELKL---PIKFIG--VGEKIDDL 259 (272)
T ss_pred EEEccCCCCCccH----HHH----HHHHHCc---CEEEEe--CCCChHhC
Confidence 6899998654332 221 2223343 778877 88887664
No 486
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.94 E-value=2.5e-05 Score=77.93 Aligned_cols=91 Identities=24% Similarity=0.236 Sum_probs=58.2
Q ss_pred Chhh-HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHH
Q psy3751 411 TPGH-EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVY 489 (967)
Q Consensus 411 tpG~-~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 489 (967)
-||| .+.+.++...+..||++++|+|+.++. .....+. ...+.-++.++|+||+|+.+. .....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~-------~~~~~~i---~~~~~~k~~ilVlNK~Dl~~~--~~~~~--- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPL-------SSRNPLL---EKILGNKPRIIVLNKADLADP--KKTKK--- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCcc-------CcCChhh---HhHhcCCCEEEEEehhhcCCh--HHHHH---
Confidence 4786 467788888899999999999998722 2111222 222222348899999999742 11111
Q ss_pred HHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 490 AYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 490 ~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
..++++..+ ..++++||++|.|++++.
T Consensus 67 -~~~~~~~~~---~~vi~iSa~~~~gi~~L~ 93 (171)
T cd01856 67 -WLKYFESKG---EKVLFVNAKSGKGVKKLL 93 (171)
T ss_pred -HHHHHHhcC---CeEEEEECCCcccHHHHH
Confidence 112222222 267999999999999843
No 487
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.93 E-value=9.2e-06 Score=78.25 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+++++|.+|+|||||+|+|++
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999986
No 488
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.92 E-value=4.3e-05 Score=73.61 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=52.4
Q ss_pred HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHH
Q psy3751 419 RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAE 496 (967)
Q Consensus 419 ~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~ 496 (967)
+.....+..+|++++|+|+.+ ....+..+....+... +. ++++|+||+|+.+. ... ....+.++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~-------p~~~~~~~l~~~l~~~~~~k-~~iivlNK~DL~~~--~~~----~~~~~~~~ 68 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARN-------PLLFRPPDLERYVKEVDPRK-KNILLLNKADLLTE--EQR----KAWAEYFK 68 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccC-------CcccCCHHHHHHHHhccCCC-cEEEEEechhcCCH--HHH----HHHHHHHH
Confidence 455677889999999999987 3333333333444333 54 48999999999742 211 22333444
Q ss_pred HcCCccceEEeccccCCCc
Q psy3751 497 DIHFQNINTIPISALNGDN 515 (967)
Q Consensus 497 ~~~~~~~~ii~iSa~~g~g 515 (967)
..+. +++++||++|.+
T Consensus 69 ~~~~---~ii~iSa~~~~~ 84 (141)
T cd01857 69 KEGI---VVVFFSALKENA 84 (141)
T ss_pred hcCC---eEEEEEecCCCc
Confidence 4453 789999999986
No 489
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=97.92 E-value=8.4e-05 Score=64.65 Aligned_cols=78 Identities=23% Similarity=0.215 Sum_probs=59.4
Q ss_pred ceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEeCc----cccceeecCCeEEEEEcc
Q psy3751 549 LRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG---KKATIKDIQMLN----KSLDMAITGQSVTLIIKE 621 (967)
Q Consensus 549 ~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~---~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~ 621 (967)
|++.+.++...+..| ++..+||.+|+|++||.|.+...+ .+.+|.+|.... .+++++.|||++++...
T Consensus 1 ~~~~vfk~~~d~~~g----~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl- 75 (86)
T cd03691 1 LQMLVTTLDYDDYVG----RIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGI- 75 (86)
T ss_pred CeEEEEEeEecCCCC----eEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECC-
Confidence 456677777766666 789999999999999999887653 246777875433 37899999999977653
Q ss_pred ccCCCCCcccc
Q psy3751 622 YLDISRGNMLV 632 (967)
Q Consensus 622 ~~~i~~G~vl~ 632 (967)
.++..||+|+
T Consensus 76 -~~~~~Gdtl~ 85 (86)
T cd03691 76 -EDITIGDTIC 85 (86)
T ss_pred -CCCcccceec
Confidence 4577899885
No 490
>PRK14974 cell division protein FtsY; Provisional
Probab=97.92 E-value=9.3e-05 Score=81.09 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=55.5
Q ss_pred CCceEEEeeChhhH----HHHHHHHhh--cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHHHcCCCeEEEEEecC
Q psy3751 402 PKRKFIIADTPGHE----QYTRNMITG--ASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 402 ~~~~~~liDtpG~~----~~~~~~~~~--~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~~~~~~~iivviNK~ 474 (967)
.++.+.||||||.. .++..+..- ...+|..+||+|+.. |- ...+.+. .....++. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~-------g~--d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA-------GN--DAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc-------ch--hHHHHHHHHHhcCCCC--EEEEeee
Confidence 35679999999943 344333221 246899999999977 31 1222222 22345665 4568999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|....-.. +.+ +....+ .|+.+++ +|++++++
T Consensus 290 D~~~~~G~----~ls----~~~~~~---~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 290 DADAKGGA----ALS----IAYVIG---KPILFLG--VGQGYDDL 321 (336)
T ss_pred cCCCCccH----HHH----HHHHHC---cCEEEEe--CCCChhhc
Confidence 98653322 222 122234 3888887 79998765
No 491
>KOG0096|consensus
Probab=97.92 E-value=2e-05 Score=75.53 Aligned_cols=149 Identities=19% Similarity=0.230 Sum_probs=94.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeece--eee
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAY--RYF 399 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~ 399 (967)
...++++++|..+.||||++++.+. +.|+ +..-.|+.+.. ..|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~lt------------------------geFe-----------~~y~at~Gv~~~pl~f 52 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLT------------------------GEFE-----------KTYPATLGVEVHPLLF 52 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhc------------------------ccce-----------ecccCcceeEEeeeee
Confidence 5689999999999999999999875 1121 11111222211 122
Q ss_pred ec--CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 400 NT--PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 400 ~~--~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
.+ +..++..|||.|.+.|....-...-++..+++++|.+.. +....-.+.|-.+++..+.-|++++.||.|..
T Consensus 53 ~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr-----~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 53 DTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSR-----FTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred ecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeeh-----hhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 22 235789999999998877666666778899999998861 12233344455555555544499999999976
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.. + ++..--.+... .+..++.+||++.-|....
T Consensus 128 ~r-~-----~k~k~v~~~rk---knl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 128 AR-K-----VKAKPVSFHRK---KNLQYYEISAKSNYNFERP 160 (216)
T ss_pred cc-c-----cccccceeeec---ccceeEEeecccccccccc
Confidence 42 1 11101111111 3568899999999888764
No 492
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.91 E-value=5.8e-05 Score=84.82 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=52.7
Q ss_pred CCceEEEeeChhhH----HHHHHHHhh--cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcCCCeEEEEEecC
Q psy3751 402 PKRKFIIADTPGHE----QYTRNMITG--ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLRIKHIIIAVNKM 474 (967)
Q Consensus 402 ~~~~~~liDtpG~~----~~~~~~~~~--~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~~~~iivviNK~ 474 (967)
.++.+.||||||.. ....++... ...+|-++||+||.. |... .+.+... ...++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~-------Gq~a--~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI-------GQAA--EAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc-------ChhH--HHHHHHHHhccCCc--EEEEECc
Confidence 35789999999932 344443332 346789999999987 3211 1122211 223444 5679999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|....-.. +. .+....+. |+.+++ +|++++++
T Consensus 250 D~~argG~----aL----s~~~~t~~---PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 250 DGHAKGGG----AL----SAVAATKS---PIIFIG--TGEHIDDF 281 (429)
T ss_pred cCCCCccH----Hh----hhHHHHCC---CeEEEc--CCCChhhc
Confidence 98643221 11 12223343 666654 57777665
No 493
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=97.90 E-value=7.5e-05 Score=64.06 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=52.1
Q ss_pred eEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeecCCeEEEEEccccCCCCCcccc
Q psy3751 568 RGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIKEYLDISRGNMLV 632 (967)
Q Consensus 568 ~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~~~~i~~G~vl~ 632 (967)
++..+||.+|+|++||.|.....+++.+|.+|.... .+++++.|||++++... . ++.||+|+
T Consensus 15 ~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~--~-~~~Gdtl~ 80 (81)
T cd04091 15 QLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGI--D-CASGDTFT 80 (81)
T ss_pred CEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECC--C-cccCCEec
Confidence 788999999999999999998888888888887543 36899999999996543 3 77899986
No 494
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.87 E-value=6.7e-05 Score=75.24 Aligned_cols=66 Identities=33% Similarity=0.488 Sum_probs=52.4
Q ss_pred CCceEEEeeC-hhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 402 PKRKFIIADT-PGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 402 ~~~~~~liDt-pG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
+.+.+.++|| +|.+-|-+-+. ..+|.+|.|+|++. .-....++.-.++..+|++++.+|+||+|..
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDpS~-------~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDPSY-------KSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhccccc---cCCCEEEEEeCCcH-------HHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4477899998 67777765553 56999999999987 4445566677888999999999999999854
No 495
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00019 Score=76.98 Aligned_cols=152 Identities=19% Similarity=0.212 Sum_probs=104.3
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc-EEEEecchhhhhccc-----
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET-LIVRSVEDSIMKGTV----- 111 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~-i~~~~~~~~~~~~~~----- 111 (967)
+++++|||||-|-+|++..+.+-. +.++.++++|.|.. .+.++.+++-+.++|.. +.+++..+.|.....
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~---~~eVia~tadvGQ~-eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ 80 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKG---GAEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIK 80 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhc---CceEEEEEEeCCCC-hHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHH
Confidence 678999999999999988888764 35799999999986 68889999999999975 888888887764321
Q ss_pred ------ccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhh-HhhhccccccccccCCCCCCCCCCcccccccccc
Q psy3751 112 ------RLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEE-KARAKERIFSFRDKFGQWNPKSQRPELWNLYNTR 184 (967)
Q Consensus 112 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des-~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 184 (967)
..++-.....+.+=-..+.+.+++.|.++|+-|-.---. .-|....+.
T Consensus 81 ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe~~~~------------------------- 135 (403)
T COG0137 81 ANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFELAIL------------------------- 135 (403)
T ss_pred hhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceeeeeeehh-------------------------
Confidence 111112222233334557788888999999776542111 112211110
Q ss_pred CCCCCceEEeeCCCC--cHHHHHHHHHHcCCCCCCc
Q psy3751 185 VHPGENIRVFPISNW--TELDIWQYIEREKIILPSL 218 (967)
Q Consensus 185 ~~~~~~~~i~Pl~~w--t~~dV~~yi~~~~lp~~~l 218 (967)
....+.-.+.|..+| +.++-.+|+.++|||+.--
T Consensus 136 al~p~lkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 136 ALNPDLKIIAPWREWNLTREEEIEYAEEHGIPVKAT 171 (403)
T ss_pred hhCCCcEEEeehhhhccChHHHHHHHHHcCCCcccc
Confidence 001223567888754 8899999999999998754
No 496
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.86 E-value=2.1e-05 Score=75.91 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
..++++|+.|+|||||+|+|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999984
No 497
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.86 E-value=3.7e-05 Score=75.56 Aligned_cols=84 Identities=21% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC-CCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcC
Q psy3751 421 MITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR-IKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499 (967)
Q Consensus 421 ~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~-~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~ 499 (967)
..+++..+|++++|+|+..+ ...+.......+.... -.++|+|+||+|+.+. +... ..+..+.+.+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p-------~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~~~---~~~~~~~~~~~ 69 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDP-------MGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WVTA---RWVKILSKEYP 69 (157)
T ss_pred hhHhhhhCCEEEEEEECCCC-------ccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HHHH---HHHHHHhcCCc
Confidence 34677899999999999872 2222223333333222 1348999999999742 2222 22222222221
Q ss_pred CccceEEeccccCCCccccc
Q psy3751 500 FQNINTIPISALNGDNIISA 519 (967)
Q Consensus 500 ~~~~~ii~iSa~~g~gi~~l 519 (967)
..++++||++|.|++++
T Consensus 70 ---~~~~~iSa~~~~~~~~L 86 (157)
T cd01858 70 ---TIAFHASINNPFGKGSL 86 (157)
T ss_pred ---EEEEEeeccccccHHHH
Confidence 23689999999999873
No 498
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.85 E-value=4.1e-05 Score=82.70 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=57.3
Q ss_pred hhhH-HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHH
Q psy3751 412 PGHE-QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYA 490 (967)
Q Consensus 412 pG~~-~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~ 490 (967)
|||- +..+++...+..+|++++|+||..+. ......... .++-+++|+|+||+|+++. ......
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~-------~~~~~~i~~---~l~~kp~IiVlNK~DL~~~--~~~~~~--- 69 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPL-------SSRNPMIDE---IRGNKPRLIVLNKADLADP--AVTKQW--- 69 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCC-------CCCChhHHH---HHCCCCEEEEEEccccCCH--HHHHHH---
Confidence 8974 56777888899999999999998722 111111111 1223458999999999742 111221
Q ss_pred HHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 491 YKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 491 ~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+.++..+ .+++++||.++.|+.++
T Consensus 70 -~~~~~~~~---~~vi~iSa~~~~gi~~L 94 (276)
T TIGR03596 70 -LKYFEEKG---IKALAINAKKGKGVKKI 94 (276)
T ss_pred -HHHHHHcC---CeEEEEECCCcccHHHH
Confidence 12223333 37899999999999874
No 499
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.85 E-value=1.9e-05 Score=77.46 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
...+++++|++|+|||||+|+|++
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHc
Confidence 457799999999999999999997
No 500
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.0001 Score=80.73 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=54.4
Q ss_pred CceEEEeeChhhH----HHHHHHHhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 403 KRKFIIADTPGHE----QYTRNMITGA--STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 403 ~~~~~liDtpG~~----~~~~~~~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
+..+.||||||.. ..+..+...+ ...|.++||+||+. +. ....+.+......++..+ ++||+|.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt-------k~-~d~~~i~~~F~~~~idgl--I~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-------KS-KDMIEIITNFKDIHIDGI--VFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc-------Ch-HHHHHHHHHhcCCCCCEE--EEEcccC
Confidence 3579999999942 3344443333 34688899999875 21 223444444445677644 4899998
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
...-.. +.+ +....+. |+..++ +|+++.+
T Consensus 390 T~k~G~----iLn----i~~~~~l---PIsyit--~GQ~VPe 418 (436)
T PRK11889 390 TASSGE----LLK----IPAVSSA---PIVLMT--DGQDVKK 418 (436)
T ss_pred CCCccH----HHH----HHHHHCc---CEEEEe--CCCCCCc
Confidence 753222 222 2333343 566654 6777765
Done!