Query psy3751
Match_columns 967
No_of_seqs 721 out of 6801
Neff 9.1
Searched_HMMs 29240
Date Sat Aug 17 00:35:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 2.9E-68 9.8E-73 610.4 46.6 414 320-743 13-436 (439)
2 1zun_B Sulfate adenylate trans 100.0 8.6E-65 2.9E-69 583.2 41.4 411 321-742 21-433 (434)
3 3p26_A Elongation factor 1 alp 100.0 1.3E-63 4.4E-68 580.8 42.8 419 321-744 30-475 (483)
4 1f60_A Elongation factor EEF1A 100.0 1.8E-63 6.2E-68 573.8 41.7 418 321-746 4-441 (458)
5 3izq_1 HBS1P, elongation facto 100.0 3.2E-63 1.1E-67 587.4 39.4 420 320-744 163-609 (611)
6 1jny_A EF-1-alpha, elongation 100.0 4.5E-63 1.5E-67 568.5 38.7 417 322-746 4-429 (435)
7 1r5b_A Eukaryotic peptide chai 100.0 9.4E-64 3.2E-68 577.6 31.5 413 321-744 40-465 (467)
8 3mca_A HBS1, elongation factor 100.0 4.3E-62 1.5E-66 576.5 30.7 410 319-744 172-591 (592)
9 1d2e_A Elongation factor TU (E 100.0 9.4E-53 3.2E-57 477.4 36.6 371 323-746 2-387 (397)
10 2c78_A Elongation factor TU-A; 100.0 4.7E-51 1.6E-55 465.5 35.4 377 320-744 7-403 (405)
11 1wb1_A Translation elongation 100.0 1.8E-51 6.1E-56 475.8 23.1 367 320-746 15-395 (482)
12 3avx_A Elongation factor TS, e 100.0 4.3E-49 1.5E-53 475.2 37.4 373 320-746 292-678 (1289)
13 2elf_A Protein translation elo 100.0 5E-49 1.7E-53 439.2 32.3 336 326-741 23-369 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 2.8E-47 9.7E-52 435.0 38.4 346 320-742 6-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 2E-47 6.9E-52 435.6 33.9 345 321-742 5-407 (408)
16 3sjy_A Translation initiation 100.0 6.7E-45 2.3E-49 414.1 37.3 357 320-741 4-401 (403)
17 1zun_A Sulfate adenylyltransfe 100.0 1.4E-46 4.8E-51 408.7 19.9 301 8-309 17-322 (325)
18 2ybo_A Methyltransferase; SUMT 100.0 1E-36 3.5E-41 328.4 24.6 229 736-964 24-259 (294)
19 1s4d_A Uroporphyrin-III C-meth 100.0 7.6E-37 2.6E-41 327.8 23.3 230 735-964 13-250 (280)
20 4e16_A Precorrin-4 C(11)-methy 100.0 9.6E-37 3.3E-41 322.3 22.8 227 735-966 3-236 (253)
21 1ve2_A Uroporphyrin-III C-meth 100.0 4.6E-36 1.6E-40 314.7 21.9 221 737-964 3-223 (235)
22 3ndc_A Precorrin-4 C(11)-methy 100.0 7.1E-36 2.4E-40 316.7 22.4 222 737-965 4-233 (264)
23 1va0_A Uroporphyrin-III C-meth 100.0 4.1E-35 1.4E-39 308.3 25.2 222 737-965 1-224 (239)
24 1pjq_A CYSG, siroheme synthase 100.0 3.3E-35 1.1E-39 337.0 22.2 230 736-965 215-447 (457)
25 1cbf_A Cobalt-precorrin-4 tran 100.0 3.1E-34 1.1E-38 309.0 25.0 224 735-964 19-250 (285)
26 2oq2_A Phosphoadenosine phosph 100.0 2.6E-34 9E-39 304.8 14.7 191 25-271 29-230 (261)
27 3e1y_E Eukaryotic peptide chai 100.0 2.8E-33 9.5E-38 284.2 20.6 194 545-746 3-201 (204)
28 2ywe_A GTP-binding protein LEP 100.0 7E-33 2.4E-37 323.8 25.0 269 322-637 4-282 (600)
29 3vqt_A RF-3, peptide chain rel 100.0 1.9E-32 6.5E-37 320.1 26.0 277 321-636 28-401 (548)
30 3i4t_A Diphthine synthase; nia 100.0 1.1E-33 3.6E-38 301.0 12.0 222 735-964 19-277 (292)
31 3kwp_A Predicted methyltransfe 100.0 1.8E-32 6E-37 293.1 20.4 216 735-962 14-237 (296)
32 3cb4_D GTP-binding protein LEP 100.0 6.1E-32 2.1E-36 316.8 24.7 269 322-637 2-280 (599)
33 1wyz_A Putative S-adenosylmeth 100.0 7E-33 2.4E-37 290.7 13.9 220 737-962 3-235 (242)
34 3fwk_A FMN adenylyltransferase 100.0 9E-33 3.1E-37 289.5 12.2 185 16-270 32-239 (308)
35 2e0n_A Precorrin-2 C20-methylt 100.0 5.1E-32 1.8E-36 288.1 17.6 219 736-964 4-237 (259)
36 3nut_A Precorrin-3 methylase; 100.0 6.9E-32 2.4E-36 285.0 17.8 216 734-964 6-236 (251)
37 2o8v_A Phosphoadenosine phosph 100.0 3E-32 1E-36 287.7 14.6 187 25-272 32-226 (252)
38 2z6r_A Diphthine synthase; met 100.0 1.5E-31 5E-36 285.7 17.4 218 738-963 2-243 (265)
39 2qbu_A Precorrin-2 methyltrans 100.0 6.6E-31 2.2E-35 275.7 17.8 213 737-963 3-230 (232)
40 2goy_A Adenosine phosphosulfat 100.0 4.2E-31 1.4E-35 282.4 14.3 192 24-272 40-240 (275)
41 1wde_A Probable diphthine synt 100.0 8E-31 2.7E-35 283.1 14.7 217 736-962 7-253 (294)
42 3j25_A Tetracycline resistance 100.0 2.3E-32 8E-37 326.4 2.9 272 323-636 1-331 (638)
43 4fn5_A EF-G 1, elongation fact 100.0 5.9E-30 2E-34 310.1 21.4 274 321-637 10-406 (709)
44 2zvb_A Precorrin-3 C17-methylt 100.0 4.7E-30 1.6E-34 274.9 17.2 215 736-964 1-248 (295)
45 1vhv_A Diphthine synthase; str 100.0 7E-30 2.4E-34 272.4 16.6 220 733-964 9-242 (268)
46 3tr5_A RF-3, peptide chain rel 100.0 3.5E-29 1.2E-33 290.9 23.5 274 322-634 11-381 (528)
47 2rdo_7 EF-G, elongation factor 100.0 1.6E-28 5.6E-33 295.7 28.2 273 321-636 7-402 (704)
48 3nd1_A Precorrin-6A synthase/C 100.0 6.7E-30 2.3E-34 269.8 14.1 203 733-948 18-248 (275)
49 2h5e_A Peptide chain release f 100.0 1.4E-28 4.8E-33 286.3 24.5 274 322-635 11-383 (529)
50 3izy_P Translation initiation 100.0 3.3E-31 1.1E-35 305.7 2.3 253 323-636 3-260 (537)
51 1zo1_I IF2, translation initia 100.0 4.5E-30 1.5E-34 293.7 7.5 249 323-635 3-258 (501)
52 1sur_A PAPS reductase; assimil 100.0 4.2E-29 1.5E-33 258.3 13.2 166 25-219 31-204 (215)
53 1dar_A EF-G, elongation factor 100.0 1.5E-27 5.1E-32 287.2 26.5 274 321-637 9-395 (691)
54 2npn_A Putative cobalamin synt 100.0 7.4E-28 2.5E-32 254.6 18.3 198 736-947 2-226 (251)
55 2wsi_A FAD synthetase; transfe 100.0 9E-29 3.1E-33 267.1 11.2 184 18-270 25-236 (306)
56 2xex_A Elongation factor G; GT 100.0 1.8E-27 6.2E-32 286.5 23.7 274 320-636 6-394 (693)
57 2dy1_A Elongation factor G; tr 99.9 7.2E-27 2.4E-31 280.4 23.5 268 322-636 7-367 (665)
58 1g7s_A Translation initiation 99.9 4.8E-27 1.6E-31 276.0 18.2 256 323-637 4-330 (594)
59 2bb3_A Cobalamin biosynthesis 99.9 8.6E-27 2.9E-31 240.6 10.7 194 736-961 21-216 (221)
60 1n0u_A EF-2, elongation factor 99.9 3.9E-24 1.3E-28 262.6 19.6 285 321-635 16-473 (842)
61 2hjg_A GTP-binding protein ENG 99.8 2.5E-19 8.4E-24 205.7 12.6 158 322-521 173-341 (436)
62 3hh1_A Tetrapyrrole methylase 99.8 5.5E-19 1.9E-23 162.3 10.7 111 734-850 3-117 (117)
63 4dcu_A GTP-binding protein ENG 99.8 8.8E-19 3E-23 202.3 13.2 249 227-521 101-361 (456)
64 2lkc_A Translation initiation 99.8 4.6E-19 1.6E-23 177.5 6.0 156 322-519 6-161 (178)
65 1wy5_A TILS, hypothetical UPF0 99.7 5.6E-18 1.9E-22 185.2 12.8 183 20-219 5-192 (317)
66 4dhe_A Probable GTP-binding pr 99.7 3.2E-17 1.1E-21 170.7 14.4 158 321-519 26-201 (223)
67 3iev_A GTP-binding protein ERA 99.7 3.8E-17 1.3E-21 178.2 14.8 155 320-519 6-172 (308)
68 1wf3_A GTP-binding protein; GT 99.7 3.9E-17 1.3E-21 176.9 13.6 148 323-519 6-163 (301)
69 2efe_B Small GTP-binding prote 99.7 6.3E-17 2.2E-21 162.3 13.3 152 321-519 9-165 (181)
70 2hxs_A RAB-26, RAS-related pro 99.7 4E-17 1.4E-21 163.3 11.4 152 322-519 4-163 (178)
71 2dyk_A GTP-binding protein; GT 99.7 7.6E-17 2.6E-21 158.3 13.0 144 325-519 2-152 (161)
72 3tw8_B RAS-related protein RAB 99.7 5.6E-17 1.9E-21 162.6 11.0 153 320-519 5-161 (181)
73 2fu5_C RAS-related protein RAB 99.7 7.1E-17 2.4E-21 162.3 10.5 152 322-520 6-162 (183)
74 3tkl_A RAS-related protein RAB 99.7 1.3E-16 4.5E-21 162.3 12.1 154 321-520 13-170 (196)
75 3clv_A RAB5 protein, putative; 99.7 1.8E-16 6.3E-21 162.4 13.1 100 404-519 93-194 (208)
76 2bme_A RAB4A, RAS-related prot 99.7 2.5E-16 8.4E-21 158.8 13.7 152 322-520 8-164 (186)
77 3i8s_A Ferrous iron transport 99.7 3.8E-17 1.3E-21 175.2 7.7 145 324-519 3-159 (274)
78 3a2k_A TRNA(Ile)-lysidine synt 99.7 1.9E-16 6.5E-21 181.8 13.7 173 34-219 15-190 (464)
79 3iby_A Ferrous iron transport 99.7 3.2E-17 1.1E-21 173.5 6.6 144 325-519 2-157 (256)
80 1mky_A Probable GTP-binding pr 99.7 8.7E-17 3E-21 184.6 10.7 158 322-521 178-347 (439)
81 2fg5_A RAB-22B, RAS-related pr 99.7 2.4E-16 8.3E-21 159.9 12.4 153 322-519 21-176 (192)
82 2ew1_A RAS-related protein RAB 99.7 3.1E-16 1.1E-20 160.2 13.3 153 321-519 23-179 (201)
83 2il1_A RAB12; G-protein, GDP, 99.7 1.7E-16 5.7E-21 161.1 11.1 154 320-519 22-180 (192)
84 2g6b_A RAS-related protein RAB 99.7 3.5E-16 1.2E-20 156.7 13.3 153 321-519 7-164 (180)
85 3bc1_A RAS-related protein RAB 99.7 4.6E-16 1.6E-20 157.8 14.3 151 321-519 8-175 (195)
86 3pqc_A Probable GTP-binding pr 99.7 7.1E-16 2.4E-20 156.6 15.5 152 321-519 20-184 (195)
87 1wms_A RAB-9, RAB9, RAS-relate 99.7 5.9E-16 2E-20 154.5 14.5 151 321-519 4-164 (177)
88 4bas_A ADP-ribosylation factor 99.7 4.4E-16 1.5E-20 158.8 13.6 155 319-519 12-179 (199)
89 1r2q_A RAS-related protein RAB 99.7 2.7E-16 9.1E-21 155.8 11.6 152 323-519 5-159 (170)
90 1ek0_A Protein (GTP-binding pr 99.7 3.9E-16 1.3E-20 154.5 12.7 152 324-519 3-159 (170)
91 2hup_A RAS-related protein RAB 99.7 6.2E-16 2.1E-20 158.1 14.4 155 320-519 25-183 (201)
92 1z0f_A RAB14, member RAS oncog 99.7 5.1E-16 1.7E-20 155.2 13.5 154 321-519 12-168 (179)
93 2f7s_A C25KG, RAS-related prot 99.7 7.5E-16 2.6E-20 159.6 15.2 152 322-520 23-190 (217)
94 1zj6_A ADP-ribosylation factor 99.7 3.1E-16 1.1E-20 158.3 11.9 152 322-519 14-168 (187)
95 3qq5_A Small GTP-binding prote 99.7 7.3E-17 2.5E-21 181.7 7.8 148 321-519 31-186 (423)
96 2y8e_A RAB-protein 6, GH09086P 99.7 1.8E-16 6.1E-21 158.5 9.9 151 323-519 13-167 (179)
97 1z08_A RAS-related protein RAB 99.7 4E-16 1.4E-20 154.6 12.3 151 322-519 4-159 (170)
98 1z2a_A RAS-related protein RAB 99.7 2.9E-16 9.8E-21 155.3 11.0 150 323-519 4-157 (168)
99 1g16_A RAS-related protein SEC 99.7 3E-16 1E-20 155.4 11.1 150 323-519 2-155 (170)
100 1z0j_A RAB-22, RAS-related pro 99.7 4.6E-16 1.6E-20 154.1 12.4 152 323-519 5-159 (170)
101 1svi_A GTP-binding protein YSX 99.7 9.7E-16 3.3E-20 155.7 15.1 153 321-519 20-185 (195)
102 1upt_A ARL1, ADP-ribosylation 99.7 3E-16 1E-20 155.6 11.0 152 322-519 5-159 (171)
103 3dz8_A RAS-related protein RAB 99.6 3.8E-16 1.3E-20 158.3 11.8 156 320-519 19-176 (191)
104 3a1s_A Iron(II) transport prot 99.6 1.1E-16 3.6E-21 169.9 8.0 146 323-520 4-158 (258)
105 2gf9_A RAS-related protein RAB 99.6 3E-16 1E-20 158.7 10.8 155 321-519 19-175 (189)
106 2a5j_A RAS-related protein RAB 99.6 2.9E-16 9.8E-21 159.2 10.6 154 320-519 17-174 (191)
107 1zbd_A Rabphilin-3A; G protein 99.6 1.1E-15 3.8E-20 156.4 15.0 154 322-520 6-162 (203)
108 3cph_A RAS-related protein SEC 99.6 4.1E-16 1.4E-20 161.0 11.5 152 322-520 18-173 (213)
109 2h57_A ADP-ribosylation factor 99.6 6.5E-16 2.2E-20 156.4 12.6 152 320-519 17-177 (190)
110 2p5s_A RAS and EF-hand domain 99.6 2.5E-16 8.4E-21 160.9 9.5 158 320-519 24-187 (199)
111 1ni5_A Putative cell cycle pro 99.6 6.3E-16 2.1E-20 175.7 13.3 172 29-219 5-179 (433)
112 2wji_A Ferrous iron transport 99.6 2.5E-16 8.4E-21 155.6 8.7 145 324-519 3-155 (165)
113 1ky3_A GTP-binding protein YPT 99.6 6.2E-16 2.1E-20 155.1 11.8 154 321-519 5-168 (182)
114 2nzj_A GTP-binding protein REM 99.6 9.2E-16 3.1E-20 152.8 12.9 151 323-519 3-159 (175)
115 2bcg_Y Protein YP2, GTP-bindin 99.6 6.7E-16 2.3E-20 158.5 12.2 152 322-520 6-162 (206)
116 2h17_A ADP-ribosylation factor 99.6 1E-15 3.5E-20 153.7 13.3 154 320-519 17-173 (181)
117 1z06_A RAS-related protein RAB 99.6 7.1E-16 2.4E-20 156.0 12.0 153 321-519 17-178 (189)
118 2o52_A RAS-related protein RAB 99.6 4.7E-16 1.6E-20 158.9 10.6 152 322-520 23-179 (200)
119 1zd9_A ADP-ribosylation factor 99.6 1.7E-15 5.9E-20 153.0 14.7 154 320-519 18-175 (188)
120 1vg8_A RAS-related protein RAB 99.6 7.9E-16 2.7E-20 158.0 12.3 152 321-520 5-166 (207)
121 1ega_A Protein (GTP-binding pr 99.6 6.6E-16 2.3E-20 167.7 11.7 150 323-519 7-165 (301)
122 2fh5_B SR-beta, signal recogni 99.6 2E-15 6.9E-20 155.9 14.8 153 321-519 4-206 (214)
123 3t1o_A Gliding protein MGLA; G 99.6 9.8E-16 3.3E-20 155.9 12.3 159 321-519 11-182 (198)
124 3kkq_A RAS-related protein M-R 99.6 9.9E-16 3.4E-20 153.9 12.1 152 320-519 14-172 (183)
125 2oil_A CATX-8, RAS-related pro 99.6 9E-16 3.1E-20 155.7 11.8 154 321-519 22-178 (193)
126 1ksh_A ARF-like protein 2; sma 99.6 1.8E-15 6.2E-20 152.5 14.0 152 322-519 16-170 (186)
127 3k53_A Ferrous iron transport 99.6 2.6E-16 9E-21 168.8 8.2 147 324-520 3-157 (271)
128 1r8s_A ADP-ribosylation factor 99.6 3.3E-15 1.1E-19 147.0 15.4 149 325-519 1-152 (164)
129 4gzl_A RAS-related C3 botulinu 99.6 8.3E-16 2.9E-20 157.6 11.4 156 319-519 25-195 (204)
130 3gee_A MNME, tRNA modification 99.6 1.9E-15 6.4E-20 173.3 15.4 149 323-520 232-389 (476)
131 2qu8_A Putative nucleolar GTP- 99.6 1.7E-15 5.7E-20 158.3 13.8 159 322-520 27-196 (228)
132 1kao_A RAP2A; GTP-binding prot 99.6 8.1E-16 2.8E-20 151.6 10.7 147 324-519 3-156 (167)
133 1mky_A Probable GTP-binding pr 99.6 2.2E-15 7.4E-20 173.0 15.8 145 325-519 2-156 (439)
134 1u8z_A RAS-related protein RAL 99.6 1.6E-15 5.5E-20 149.7 12.7 150 323-519 3-157 (168)
135 1fzq_A ADP-ribosylation factor 99.6 2.6E-15 8.7E-20 150.7 14.1 152 322-519 14-168 (181)
136 3q72_A GTP-binding protein RAD 99.6 1.6E-15 5.5E-20 149.6 12.4 149 324-519 2-154 (166)
137 3cpj_B GTP-binding protein YPT 99.6 6.4E-16 2.2E-20 160.8 9.5 151 322-519 11-166 (223)
138 3r7w_A Gtpase1, GTP-binding pr 99.6 3.9E-15 1.3E-19 162.3 16.1 157 323-519 2-171 (307)
139 2fn4_A P23, RAS-related protei 99.6 9E-16 3.1E-20 153.7 10.2 151 321-519 6-162 (181)
140 2erx_A GTP-binding protein DI- 99.6 1.9E-15 6.6E-20 149.8 12.5 151 323-519 2-157 (172)
141 1f6b_A SAR1; gtpases, N-termin 99.6 1.3E-15 4.4E-20 155.4 11.3 148 323-519 24-189 (198)
142 1m2o_B GTP-binding protein SAR 99.6 1.6E-15 5.3E-20 153.6 11.9 149 323-519 22-182 (190)
143 1c1y_A RAS-related protein RAP 99.6 1.1E-15 3.7E-20 150.9 10.2 150 324-519 3-157 (167)
144 1x3s_A RAS-related protein RAB 99.6 1.6E-15 5.6E-20 153.9 11.7 150 322-519 13-168 (195)
145 3q85_A GTP-binding protein REM 99.6 2.2E-15 7.6E-20 149.1 12.4 149 324-519 2-157 (169)
146 4djt_A GTP-binding nuclear pro 99.6 6.7E-16 2.3E-20 160.1 9.0 153 320-520 7-166 (218)
147 3b1v_A Ferrous iron uptake tra 99.6 4E-16 1.4E-20 166.3 7.2 144 324-519 3-154 (272)
148 3reg_A RHO-like small GTPase; 99.6 2.4E-15 8.2E-20 152.8 12.7 155 320-519 19-178 (194)
149 2hjg_A GTP-binding protein ENG 99.6 1E-15 3.5E-20 175.6 11.0 144 325-519 4-155 (436)
150 4dsu_A GTPase KRAS, isoform 2B 99.6 2.4E-15 8.3E-20 151.7 12.6 150 322-520 2-157 (189)
151 4dkx_A RAS-related protein RAB 99.6 1.2E-15 4E-20 157.0 10.1 151 323-519 12-166 (216)
152 1mh1_A RAC1; GTP-binding, GTPa 99.6 3.9E-15 1.3E-19 149.9 13.7 152 323-519 4-170 (186)
153 2yc2_C IFT27, small RAB-relate 99.6 1.5E-15 5.2E-20 155.9 10.7 154 322-520 18-183 (208)
154 3llu_A RAS-related GTP-binding 99.6 3.4E-15 1.2E-19 151.9 13.1 159 319-519 15-187 (196)
155 2dpl_A GMP synthetase, GMP syn 99.6 3.2E-15 1.1E-19 161.8 13.3 179 19-219 3-184 (308)
156 3t5g_A GTP-binding protein RHE 99.6 6.3E-16 2.1E-20 155.1 7.1 149 323-519 5-159 (181)
157 2bov_A RAla, RAS-related prote 99.6 4.6E-15 1.6E-19 152.1 13.7 152 321-520 11-168 (206)
158 2a9k_A RAS-related protein RAL 99.6 4.1E-15 1.4E-19 149.7 13.1 150 321-519 15-171 (187)
159 2gj8_A MNME, tRNA modification 99.6 9E-16 3.1E-20 152.6 7.8 143 323-519 3-156 (172)
160 2b6h_A ADP-ribosylation factor 99.6 4.7E-15 1.6E-19 150.4 13.1 152 322-519 27-181 (192)
161 2gco_A H9, RHO-related GTP-bin 99.6 4.6E-15 1.6E-19 151.6 12.8 155 322-519 23-190 (201)
162 2gf0_A GTP-binding protein DI- 99.6 5.2E-15 1.8E-19 150.8 13.1 153 320-519 4-161 (199)
163 2ce2_X GTPase HRAS; signaling 99.6 5.9E-15 2E-19 145.2 12.5 146 324-519 3-155 (166)
164 2x77_A ADP-ribosylation factor 99.6 1.9E-15 6.5E-20 152.8 9.2 152 322-519 20-174 (189)
165 2qtf_A Protein HFLX, GTP-bindi 99.6 9.6E-15 3.3E-19 162.0 15.5 157 322-519 177-344 (364)
166 2wjg_A FEOB, ferrous iron tran 99.6 1.8E-15 6.3E-20 152.7 8.6 146 323-519 6-159 (188)
167 1moz_A ARL1, ADP-ribosylation 99.6 2.6E-15 9E-20 150.8 9.7 150 322-519 16-170 (183)
168 2atx_A Small GTP binding prote 99.6 6.7E-15 2.3E-19 149.4 12.8 153 322-519 16-183 (194)
169 3oes_A GTPase rhebl1; small GT 99.6 9.9E-16 3.4E-20 156.6 6.5 152 321-519 21-177 (201)
170 3cbq_A GTP-binding protein REM 99.6 4.9E-15 1.7E-19 150.6 11.4 154 319-519 18-178 (195)
171 2ywb_A GMP synthase [glutamine 99.6 6.8E-15 2.3E-19 170.4 14.0 182 19-219 192-377 (503)
172 3con_A GTPase NRAS; structural 99.6 1.2E-14 4.2E-19 146.9 14.0 147 323-519 20-173 (190)
173 3bwd_D RAC-like GTP-binding pr 99.6 4.7E-15 1.6E-19 148.7 10.7 155 322-519 6-171 (182)
174 2xtp_A GTPase IMAP family memb 99.6 6.2E-15 2.1E-19 157.2 12.3 158 321-520 19-199 (260)
175 3l0i_B RAS-related protein RAB 99.6 1.3E-16 4.6E-21 162.8 -0.7 151 322-519 31-186 (199)
176 3t5d_A Septin-7; GTP-binding p 99.6 1.4E-14 4.9E-19 155.4 14.6 160 322-519 6-194 (274)
177 2fv8_A H6, RHO-related GTP-bin 99.6 1.3E-14 4.6E-19 148.9 13.5 154 323-519 24-190 (207)
178 2j1l_A RHO-related GTP-binding 99.6 2E-14 6.7E-19 148.5 14.7 154 322-519 32-199 (214)
179 2j0v_A RAC-like GTP-binding pr 99.6 7E-15 2.4E-19 151.6 11.2 153 322-519 7-170 (212)
180 3o47_A ADP-ribosylation factor 99.6 5.1E-15 1.8E-19 162.8 10.4 154 321-519 162-317 (329)
181 3gj0_A GTP-binding nuclear pro 99.6 2.9E-15 1E-19 155.6 7.7 153 320-519 11-165 (221)
182 4dcu_A GTP-binding protein ENG 99.6 1E-14 3.6E-19 168.2 13.0 146 323-519 22-175 (456)
183 2cxx_A Probable GTP-binding pr 99.6 2.3E-14 7.8E-19 144.8 13.8 150 325-519 2-174 (190)
184 3ihw_A Centg3; RAS, centaurin, 99.6 1.3E-14 4.3E-19 146.1 11.5 148 320-519 16-170 (184)
185 3q3j_B RHO-related GTP-binding 99.5 9.7E-15 3.3E-19 150.8 10.8 158 320-519 23-193 (214)
186 2atv_A RERG, RAS-like estrogen 99.5 1.4E-14 4.6E-19 147.4 11.4 150 322-519 26-181 (196)
187 3geh_A MNME, tRNA modification 99.5 3.3E-15 1.1E-19 170.6 7.6 145 323-520 223-375 (462)
188 1xzp_A Probable tRNA modificat 99.5 4.6E-15 1.6E-19 170.2 8.7 147 323-521 242-397 (482)
189 1kor_A Argininosuccinate synth 99.5 6.7E-14 2.3E-18 155.8 17.7 217 38-294 1-254 (400)
190 3lxw_A GTPase IMAP family memb 99.5 1.9E-14 6.5E-19 151.7 12.4 157 321-519 18-198 (247)
191 3c5c_A RAS-like protein 12; GD 99.5 1.2E-14 3.9E-19 146.8 9.7 153 320-519 17-176 (187)
192 2q3h_A RAS homolog gene family 99.5 5E-14 1.7E-18 143.8 14.5 156 320-519 16-185 (201)
193 1lnz_A SPO0B-associated GTP-bi 99.5 1.7E-14 5.8E-19 158.2 11.5 152 323-519 157-320 (342)
194 1m7b_A RND3/RHOE small GTP-bin 99.5 6.7E-14 2.3E-18 140.7 14.5 154 322-519 5-173 (184)
195 1gwn_A RHO-related GTP-binding 99.5 6E-14 2.1E-18 143.7 14.3 155 321-519 25-194 (205)
196 3th5_A RAS-related C3 botulinu 99.3 1.2E-15 4.1E-20 156.4 0.0 160 320-521 26-197 (204)
197 3lxx_A GTPase IMAP family memb 99.5 6.9E-14 2.4E-18 147.0 12.3 157 320-518 25-203 (239)
198 2iwr_A Centaurin gamma 1; ANK 99.5 6.2E-14 2.1E-18 140.0 10.8 145 322-519 5-159 (178)
199 3lvq_E ARF-GAP with SH3 domain 99.5 1.4E-13 4.7E-18 161.2 14.7 151 322-519 320-474 (497)
200 1nrj_B SR-beta, signal recogni 99.5 8.7E-14 3E-18 144.0 11.0 150 321-516 9-171 (218)
201 3k32_A Uncharacterized protein 99.5 1E-14 3.6E-19 148.2 3.8 146 38-214 7-155 (203)
202 2zej_A Dardarin, leucine-rich 99.5 1.3E-13 4.6E-18 138.5 11.7 157 324-519 2-168 (184)
203 2g3y_A GTP-binding protein GEM 99.5 3.2E-13 1.1E-17 138.4 13.5 152 322-519 35-193 (211)
204 3bl5_A Queuosine biosynthesis 99.5 2.7E-13 9.4E-18 140.4 12.5 157 38-214 4-176 (219)
205 2e87_A Hypothetical protein PH 99.5 4.4E-13 1.5E-17 149.4 15.0 152 322-520 165-327 (357)
206 2aka_B Dynamin-1; fusion prote 99.4 1.7E-13 5.8E-18 149.4 10.3 106 403-520 124-244 (299)
207 2wkq_A NPH1-1, RAS-related C3 99.4 3.7E-13 1.3E-17 149.0 13.0 154 322-519 153-320 (332)
208 3ffy_A Putative tetrapyrrole ( 99.4 3.5E-13 1.2E-17 122.4 10.2 111 848-962 1-113 (115)
209 1h65_A Chloroplast outer envel 99.4 1.9E-13 6.4E-18 146.4 10.0 120 322-479 37-169 (270)
210 2hma_A Probable tRNA (5-methyl 99.4 2E-13 6.7E-18 151.5 10.3 164 38-215 10-193 (376)
211 3tqi_A GMP synthase [glutamine 99.4 2.1E-13 7.3E-18 158.5 10.3 182 19-219 213-401 (527)
212 3dpu_A RAB family protein; roc 99.4 2E-13 6.9E-18 160.8 9.1 151 322-519 39-198 (535)
213 2der_A TRNA-specific 2-thiouri 99.4 2.6E-13 9E-18 150.3 8.6 167 35-215 15-201 (380)
214 2cjw_A GTP-binding protein GEM 99.4 7.7E-13 2.6E-17 133.9 11.0 152 323-520 5-163 (192)
215 3def_A T7I23.11 protein; chlor 99.4 3.9E-13 1.3E-17 143.2 9.1 120 322-479 34-166 (262)
216 1pui_A ENGB, probable GTP-bind 99.4 4.4E-12 1.5E-16 130.3 15.6 153 322-519 24-189 (210)
217 2j69_A Bacterial dynamin-like 99.4 1.2E-12 4E-17 157.7 13.0 108 404-519 174-315 (695)
218 2pg3_A Queuosine biosynthesis 99.4 1.1E-12 3.9E-17 136.7 11.0 157 38-215 3-181 (232)
219 2f9l_A RAB11B, member RAS onco 99.4 1.9E-12 6.4E-17 131.9 11.5 151 323-520 4-159 (199)
220 3p52_A NH(3)-dependent NAD(+) 99.4 1.5E-12 5.1E-17 135.8 10.7 164 19-214 6-175 (249)
221 3fiu_A NH(3)-dependent NAD(+) 99.4 3E-12 1E-16 133.7 12.4 163 19-214 9-184 (249)
222 1jwy_B Dynamin A GTPase domain 99.3 7.1E-13 2.4E-17 145.6 7.7 72 402-480 129-214 (315)
223 2e18_A NH(3)-dependent NAD(+) 99.3 2.2E-12 7.4E-17 136.5 10.9 166 19-219 6-176 (257)
224 1xng_A NH(3)-dependent NAD(+) 99.3 2.8E-12 9.5E-17 136.4 11.7 165 19-215 5-175 (268)
225 1wxq_A GTP-binding protein; st 99.3 1.8E-12 6.2E-17 145.3 9.6 37 404-440 71-114 (397)
226 2qag_A Septin-2, protein NEDD5 99.3 2E-12 7E-17 143.7 9.9 159 322-518 35-222 (361)
227 3c5h_A Glucocorticoid receptor 99.3 3.1E-12 1.1E-16 135.5 8.8 80 427-519 162-245 (255)
228 1oix_A RAS-related protein RAB 99.3 8E-12 2.7E-16 126.3 11.0 151 322-519 27-182 (191)
229 3p32_A Probable GTPase RV1496/ 99.3 5.6E-12 1.9E-16 140.2 9.6 105 400-521 168-276 (355)
230 2c5s_A THII, probable thiamine 99.3 4.2E-12 1.4E-16 143.1 8.6 148 38-214 188-344 (413)
231 4a9a_A Ribosome-interacting GT 99.3 6.8E-12 2.3E-16 138.3 10.0 153 283-476 27-194 (376)
232 2p67_A LAO/AO transport system 99.3 1E-11 3.5E-16 137.2 11.4 103 401-520 146-252 (341)
233 3r7w_B Gtpase2, GTP-binding pr 99.3 1E-11 3.4E-16 133.3 10.8 157 326-520 1-165 (331)
234 1gpm_A GMP synthetase, XMP ami 99.3 1.3E-11 4.3E-16 143.7 12.4 185 19-219 210-399 (525)
235 2www_A Methylmalonic aciduria 99.3 1.5E-11 5.1E-16 136.0 12.2 104 401-521 164-271 (349)
236 2ged_A SR-beta, signal recogni 99.2 8.1E-12 2.8E-16 126.3 7.9 115 322-480 46-172 (193)
237 2x2e_A Dynamin-1; nitration, h 99.2 5.7E-12 2E-16 140.2 6.4 106 403-520 129-249 (353)
238 2qpt_A EH domain-containing pr 99.2 3E-11 1E-15 141.4 11.2 68 404-478 154-232 (550)
239 1k92_A Argininosuccinate synth 99.2 2.8E-11 9.7E-16 134.9 9.9 152 35-216 8-183 (455)
240 1udx_A The GTP-binding protein 99.2 5.3E-11 1.8E-15 133.5 11.8 148 324-521 157-317 (416)
241 3zvr_A Dynamin-1; hydrolase, D 99.2 3E-11 1E-15 143.7 10.1 106 403-520 149-269 (772)
242 3t34_A Dynamin-related protein 99.1 3E-11 1E-15 134.8 5.9 104 403-519 135-251 (360)
243 2nz2_A Argininosuccinate synth 99.1 1.9E-10 6.3E-15 128.3 11.6 149 37-216 5-173 (413)
244 2wsm_A Hydrogenase expression/ 99.1 4.1E-11 1.4E-15 124.1 5.7 99 401-519 106-204 (221)
245 3uow_A GMP synthetase; structu 99.1 2.6E-10 8.8E-15 133.0 12.9 183 19-219 238-430 (556)
246 2vxo_A GMP synthase [glutamine 99.1 3.3E-10 1.1E-14 134.7 13.1 190 19-219 223-438 (697)
247 1jal_A YCHF protein; nucleotid 99.1 2.5E-10 8.5E-15 125.0 9.1 82 325-439 3-108 (363)
248 1yrb_A ATP(GTP)binding protein 99.0 2.1E-09 7.3E-14 114.3 13.4 104 404-519 109-247 (262)
249 1vl2_A Argininosuccinate synth 99.0 1E-09 3.6E-14 120.9 10.4 148 38-216 15-182 (421)
250 2qag_C Septin-7; cell cycle, c 98.9 1.8E-09 6.2E-14 121.1 11.1 158 322-518 29-216 (418)
251 2dby_A GTP-binding protein; GD 98.9 8.9E-10 3E-14 121.6 7.3 36 404-439 69-111 (368)
252 2qnr_A Septin-2, protein NEDD5 98.9 2.7E-09 9.1E-14 115.4 10.7 78 428-519 127-204 (301)
253 2qm8_A GTPase/ATPase; G protei 98.9 2.1E-09 7.2E-14 118.1 9.4 106 400-521 144-253 (337)
254 1xe1_A Hypothetical protein PF 98.8 4E-08 1.4E-12 86.2 10.7 63 568-633 49-113 (116)
255 2hf9_A Probable hydrogenase ni 98.7 4.8E-09 1.6E-13 108.8 4.4 96 404-519 119-214 (226)
256 2j37_W Signal recognition part 98.7 4.3E-08 1.5E-12 112.3 10.4 68 402-479 182-255 (504)
257 3q4g_A NH(3)-dependent NAD(+) 98.6 3.2E-08 1.1E-12 104.1 6.9 165 19-214 20-211 (279)
258 1wxi_A NH(3)-dependent NAD(+) 98.6 3.9E-08 1.3E-12 104.0 7.4 166 19-215 19-203 (275)
259 3n05_A NH(3)-dependent NAD(+) 98.6 1.3E-07 4.4E-12 111.9 12.1 165 17-212 304-473 (590)
260 1kqp_A NAD+ synthase, NH(3)-de 98.6 6.5E-08 2.2E-12 102.3 7.6 166 19-215 18-200 (271)
261 2qag_B Septin-6, protein NEDD5 98.6 2.1E-07 7.3E-12 103.7 11.9 67 430-510 151-217 (427)
262 3dpi_A NAD+ synthetase; ssgcid 98.5 8.1E-08 2.8E-12 101.0 7.5 165 19-214 26-211 (285)
263 3ec1_A YQEH GTPase; atnos1, at 98.5 4.9E-09 1.7E-13 116.7 -2.7 148 325-518 163-320 (369)
264 2ohf_A Protein OLA1, GTP-bindi 98.5 9.5E-08 3.3E-12 105.6 6.2 85 322-439 20-128 (396)
265 3ohm_A Guanine nucleotide-bind 98.5 1.7E-07 5.8E-12 101.3 8.0 130 390-519 153-308 (327)
266 3h2y_A GTPase family protein; 98.5 1.1E-08 3.6E-13 113.8 -2.4 149 325-518 161-319 (368)
267 4fid_A G protein alpha subunit 98.4 6E-07 2.1E-11 97.3 10.7 89 390-478 147-242 (340)
268 3sop_A Neuronal-specific septi 98.4 1.5E-06 5.1E-11 92.0 13.5 64 426-500 110-174 (270)
269 1vbk_A Hypothetical protein PH 98.4 3.3E-07 1.1E-11 98.5 6.9 119 38-213 180-307 (307)
270 2v3c_C SRP54, signal recogniti 98.3 2.3E-06 8E-11 96.5 12.9 67 402-478 179-252 (432)
271 1tq4_A IIGP1, interferon-induc 98.3 4.3E-06 1.5E-10 93.4 13.6 153 323-519 68-243 (413)
272 3dm5_A SRP54, signal recogniti 98.2 8E-06 2.7E-10 91.5 13.5 97 402-521 181-283 (443)
273 1u0l_A Probable GTPase ENGC; p 98.2 2.4E-06 8.3E-11 92.2 7.9 101 404-519 63-163 (301)
274 1cip_A Protein (guanine nucleo 98.2 9.4E-07 3.2E-11 97.1 4.5 130 390-519 179-334 (353)
275 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 2.2E-06 7.4E-11 95.1 7.4 86 322-439 18-127 (392)
276 1puj_A YLQF, conserved hypothe 98.1 6E-06 2E-10 88.0 9.1 93 408-519 3-96 (282)
277 1zcb_A G alpha I/13; GTP-bindi 98.1 2.4E-06 8.2E-11 94.2 5.9 129 391-519 188-343 (362)
278 3kl4_A SRP54, signal recogniti 98.0 2.5E-05 8.5E-10 87.6 12.8 95 402-520 178-281 (433)
279 3rjz_A N-type ATP pyrophosphat 98.0 1.3E-05 4.4E-10 81.8 9.3 130 39-214 6-141 (237)
280 3sdb_A Glutamine-dependent NAD 98.0 7.7E-06 2.6E-10 97.6 8.7 163 20-211 342-521 (680)
281 1j8m_F SRP54, signal recogniti 98.0 2.7E-05 9.2E-10 83.4 12.1 96 402-520 179-282 (297)
282 1azs_C GS-alpha; complex (lyas 97.9 1.9E-05 6.5E-10 87.6 7.9 87 391-477 204-297 (402)
283 3ilv_A Glutamine-dependent NAD 97.8 4.7E-05 1.6E-09 90.4 10.6 159 27-214 291-505 (634)
284 1puj_A YLQF, conserved hypothe 97.8 1.6E-05 5.6E-10 84.6 5.7 26 322-347 118-143 (282)
285 1f5n_A Interferon-induced guan 97.8 2.2E-05 7.6E-10 91.3 7.1 26 322-347 36-61 (592)
286 2yv5_A YJEQ protein; hydrolase 97.8 5.4E-05 1.9E-09 81.5 9.4 86 423-520 75-160 (302)
287 3h2y_A GTPase family protein; 97.7 3.9E-05 1.3E-09 85.0 7.8 95 414-519 56-150 (368)
288 3ec1_A YQEH GTPase; atnos1, at 97.7 2.4E-05 8.3E-10 86.8 5.9 102 406-519 51-152 (369)
289 2xtz_A Guanine nucleotide-bind 97.6 4.2E-05 1.5E-09 83.8 6.2 75 403-477 182-263 (354)
290 3e70_C DPA, signal recognition 97.6 0.00027 9.3E-09 76.6 12.3 94 403-520 211-311 (328)
291 2xxa_A Signal recognition part 97.6 0.00014 4.9E-09 81.9 9.6 66 402-478 182-254 (433)
292 1d1n_A Initiation factor 2; be 97.5 9.5E-05 3.2E-09 63.0 5.6 77 553-633 11-90 (99)
293 3l82_B F-box only protein 4; T 97.5 0.00016 5.5E-09 71.4 7.7 178 322-518 14-212 (227)
294 2yhs_A FTSY, cell division pro 97.5 0.00048 1.7E-08 77.8 12.7 95 402-520 374-481 (503)
295 3cnl_A YLQF, putative uncharac 97.5 0.00018 6E-09 75.6 8.4 85 412-518 5-90 (262)
296 3cnl_A YLQF, putative uncharac 97.4 8.6E-05 2.9E-09 78.1 4.2 22 325-346 100-121 (262)
297 1t9h_A YLOQ, probable GTPase E 97.4 0.00027 9.3E-09 75.6 7.7 85 424-519 83-167 (307)
298 2crv_A IF-2MT, translation ini 97.4 0.00031 1.1E-08 62.1 6.6 82 551-633 13-98 (120)
299 1ct9_A Asparagine synthetase B 97.3 0.00069 2.4E-08 79.0 11.2 125 25-151 214-354 (553)
300 4f4h_A Glutamine dependent NAD 97.3 0.00091 3.1E-08 78.1 11.8 152 30-212 291-453 (565)
301 1vma_A Cell division protein F 97.2 0.0013 4.4E-08 70.5 11.0 24 323-346 103-126 (306)
302 1zu4_A FTSY; GTPase, signal re 97.2 0.0021 7.3E-08 69.4 12.8 24 323-346 104-127 (320)
303 2px0_A Flagellar biosynthesis 97.2 0.0015 5.2E-08 69.7 11.3 23 324-346 105-127 (296)
304 1jgt_A Beta-lactam synthetase; 97.2 0.00056 1.9E-08 79.0 8.4 127 19-152 219-355 (513)
305 1rj9_A FTSY, signal recognitio 97.1 0.0025 8.4E-08 68.3 12.1 24 323-346 101-124 (304)
306 1q15_A CARA; CMPR, (2S,5S)-5-c 97.0 0.00081 2.8E-08 77.5 8.0 127 19-152 216-352 (503)
307 3szr_A Interferon-induced GTP- 97.0 0.0022 7.4E-08 76.0 11.4 22 326-347 47-68 (608)
308 3l2o_B F-box only protein 4; s 96.9 0.00054 1.8E-08 71.1 4.7 136 372-518 155-297 (312)
309 2ffh_A Protein (FFH); SRP54, s 96.9 0.0076 2.6E-07 67.3 13.9 94 402-519 179-279 (425)
310 1zo1_I IF2, translation initia 96.8 0.0033 1.1E-07 71.9 9.8 96 534-633 394-492 (501)
311 2rcn_A Probable GTPase ENGC; Y 96.6 0.0034 1.2E-07 68.4 7.7 84 423-519 126-209 (358)
312 1ls1_A Signal recognition part 96.5 0.023 7.9E-07 60.5 13.7 94 402-519 179-279 (295)
313 4dzz_A Plasmid partitioning pr 96.4 0.017 6E-07 57.7 11.7 65 403-477 75-143 (206)
314 3q5d_A Atlastin-1; G protein, 96.4 0.0074 2.5E-07 67.7 9.6 25 322-346 65-89 (447)
315 2og2_A Putative signal recogni 96.0 0.073 2.5E-06 58.1 14.3 24 323-346 156-179 (359)
316 3izy_P Translation initiation 95.9 0.021 7.2E-07 65.8 9.9 187 406-632 343-534 (537)
317 1nij_A Hypothetical protein YJ 95.3 0.074 2.5E-06 57.3 11.1 25 323-347 3-27 (318)
318 3cwq_A Para family chromosome 95.2 0.047 1.6E-06 54.9 8.6 67 402-478 66-134 (209)
319 3b9q_A Chloroplast SRP recepto 95.2 0.21 7.3E-06 53.1 14.1 24 323-346 99-122 (302)
320 1g7s_A Translation initiation 94.5 0.11 3.7E-06 60.9 10.4 73 555-633 472-548 (594)
321 1t9h_A YLOQ, probable GTPase E 94.2 0.012 4.2E-07 62.7 1.4 21 326-346 175-195 (307)
322 1ye8_A Protein THEP1, hypothet 94.1 0.024 8.2E-07 55.4 3.1 23 325-347 1-23 (178)
323 3end_A Light-independent proto 94.1 0.2 6.8E-06 53.6 10.7 67 402-476 155-225 (307)
324 1lvg_A Guanylate kinase, GMP k 93.4 0.032 1.1E-06 55.6 2.7 22 325-346 5-26 (198)
325 1kgd_A CASK, peripheral plasma 93.3 0.038 1.3E-06 54.1 2.9 22 326-347 7-28 (180)
326 1bif_A 6-phosphofructo-2-kinas 93.0 0.13 4.3E-06 58.8 7.2 24 323-346 38-61 (469)
327 3c8u_A Fructokinase; YP_612366 92.8 0.062 2.1E-06 53.9 3.7 24 323-346 21-44 (208)
328 1znw_A Guanylate kinase, GMP k 92.5 0.056 1.9E-06 54.2 2.9 22 326-347 22-43 (207)
329 1zp6_A Hypothetical protein AT 92.4 0.076 2.6E-06 52.3 3.8 24 324-347 9-32 (191)
330 3tr0_A Guanylate kinase, GMP k 92.4 0.06 2.1E-06 53.7 3.0 23 325-347 8-30 (205)
331 3a00_A Guanylate kinase, GMP k 92.3 0.06 2.1E-06 52.9 2.8 20 327-346 4-23 (186)
332 3asz_A Uridine kinase; cytidin 92.3 0.075 2.6E-06 53.3 3.6 25 323-347 5-29 (211)
333 2rcn_A Probable GTPase ENGC; Y 92.1 0.066 2.2E-06 58.2 3.1 23 326-348 217-239 (358)
334 4gp7_A Metallophosphoesterase; 92.1 0.062 2.1E-06 52.0 2.6 21 326-346 11-31 (171)
335 1z6g_A Guanylate kinase; struc 92.1 0.068 2.3E-06 54.1 2.9 21 326-346 25-45 (218)
336 4ido_A Atlastin-1; GTPase, GTP 91.9 0.52 1.8E-05 52.5 10.0 26 321-346 64-89 (457)
337 1s96_A Guanylate kinase, GMP k 91.9 0.076 2.6E-06 53.7 3.0 25 323-347 15-39 (219)
338 1htw_A HI0065; nucleotide-bind 91.8 0.079 2.7E-06 50.5 2.9 21 326-346 35-55 (158)
339 1kag_A SKI, shikimate kinase I 91.8 0.077 2.6E-06 51.3 2.9 25 325-349 5-29 (173)
340 3ney_A 55 kDa erythrocyte memb 91.8 0.096 3.3E-06 51.8 3.6 23 325-347 20-42 (197)
341 3tif_A Uncharacterized ABC tra 91.6 0.076 2.6E-06 54.4 2.7 22 326-347 33-54 (235)
342 2pcj_A ABC transporter, lipopr 91.6 0.081 2.8E-06 53.8 2.9 21 326-346 32-52 (224)
343 3ug7_A Arsenical pump-driving 91.6 2.9 0.0001 45.3 15.6 84 428-518 237-324 (349)
344 1knq_A Gluconate kinase; ALFA/ 91.3 0.12 4.2E-06 49.9 3.8 26 324-349 8-33 (175)
345 3tau_A Guanylate kinase, GMP k 91.2 0.12 4E-06 51.9 3.6 25 324-348 8-32 (208)
346 4eun_A Thermoresistant glucoki 91.1 0.096 3.3E-06 52.1 2.9 28 323-350 28-55 (200)
347 2v9p_A Replication protein E1; 91.1 0.1 3.5E-06 55.5 3.1 22 325-346 127-148 (305)
348 2onk_A Molybdate/tungstate ABC 91.1 0.1 3.4E-06 53.6 2.9 23 325-347 25-47 (240)
349 2cbz_A Multidrug resistance-as 91.0 0.1 3.5E-06 53.5 3.0 21 326-346 33-53 (237)
350 1g3q_A MIND ATPase, cell divis 91.0 0.31 1.1E-05 49.7 6.6 67 403-478 111-177 (237)
351 2j41_A Guanylate kinase; GMP, 90.9 0.12 4.2E-06 51.4 3.5 23 325-347 7-29 (207)
352 1sgw_A Putative ABC transporte 90.9 0.1 3.5E-06 52.6 2.7 22 326-347 37-58 (214)
353 1ihu_A Arsenical pump-driving 90.9 1 3.4E-05 53.0 11.8 42 429-477 199-240 (589)
354 2pze_A Cystic fibrosis transme 90.8 0.11 3.7E-06 53.0 3.0 21 326-346 36-56 (229)
355 3b85_A Phosphate starvation-in 90.8 0.1 3.5E-06 52.3 2.7 21 326-346 24-44 (208)
356 1hyq_A MIND, cell division inh 90.8 0.36 1.2E-05 50.1 7.1 66 403-477 110-175 (263)
357 2eyu_A Twitching motility prot 90.8 0.12 4.1E-06 53.9 3.2 22 325-346 26-47 (261)
358 1mv5_A LMRA, multidrug resista 90.8 0.11 3.8E-06 53.5 3.0 22 326-347 30-51 (243)
359 4g1u_C Hemin import ATP-bindin 90.8 0.1 3.5E-06 54.5 2.7 22 326-347 39-60 (266)
360 3gfo_A Cobalt import ATP-bindi 90.7 0.1 3.5E-06 54.7 2.7 22 326-347 36-57 (275)
361 1np6_A Molybdopterin-guanine d 90.7 0.13 4.6E-06 49.8 3.3 23 324-346 6-28 (174)
362 2bdt_A BH3686; alpha-beta prot 90.7 0.12 4E-06 50.9 2.9 21 326-346 4-24 (189)
363 1g6h_A High-affinity branched- 90.6 0.11 3.6E-06 54.1 2.7 22 326-347 35-56 (257)
364 2i3b_A HCR-ntpase, human cance 90.6 0.11 3.8E-06 51.1 2.7 21 326-346 3-23 (189)
365 2ff7_A Alpha-hemolysin translo 90.6 0.12 4E-06 53.4 3.0 22 326-347 37-58 (247)
366 1b0u_A Histidine permease; ABC 90.6 0.11 3.7E-06 54.2 2.7 21 326-346 34-54 (262)
367 2f1r_A Molybdopterin-guanine d 90.5 0.073 2.5E-06 51.5 1.2 21 326-346 4-24 (171)
368 1ji0_A ABC transporter; ATP bi 90.4 0.12 3.9E-06 53.2 2.7 22 326-347 34-55 (240)
369 2yv5_A YJEQ protein; hydrolase 90.4 0.12 4.1E-06 55.2 2.9 20 326-345 167-186 (302)
370 2ghi_A Transport protein; mult 90.3 0.13 4.3E-06 53.7 3.0 22 326-347 48-69 (260)
371 2d2e_A SUFC protein; ABC-ATPas 90.3 0.14 4.6E-06 53.1 3.2 21 326-346 31-51 (250)
372 1cke_A CK, MSSA, protein (cyti 90.3 0.15 5E-06 51.8 3.4 25 325-349 6-30 (227)
373 3aez_A Pantothenate kinase; tr 90.3 0.16 5.6E-06 54.3 3.9 25 322-346 88-112 (312)
374 2qor_A Guanylate kinase; phosp 90.3 0.14 4.8E-06 51.1 3.2 26 323-348 11-36 (204)
375 2qi9_C Vitamin B12 import ATP- 90.2 0.13 4.5E-06 53.1 3.0 21 326-346 28-48 (249)
376 3kb2_A SPBC2 prophage-derived 90.2 0.13 4.4E-06 49.5 2.7 23 326-348 3-25 (173)
377 2olj_A Amino acid ABC transpor 90.2 0.13 4.5E-06 53.5 3.0 22 326-347 52-73 (263)
378 2if2_A Dephospho-COA kinase; a 90.2 0.15 5.1E-06 50.8 3.2 24 325-349 2-25 (204)
379 1vpl_A ABC transporter, ATP-bi 90.1 0.13 4.6E-06 53.2 3.0 22 326-347 43-64 (256)
380 1u0l_A Probable GTPase ENGC; p 90.1 0.12 4E-06 55.2 2.6 22 326-347 171-192 (301)
381 3lw7_A Adenylate kinase relate 90.0 0.15 5.1E-06 49.1 3.0 24 325-349 2-25 (179)
382 2zu0_C Probable ATP-dependent 89.9 0.15 5.2E-06 53.3 3.2 21 326-346 48-68 (267)
383 3cm0_A Adenylate kinase; ATP-b 89.9 0.16 5.6E-06 49.5 3.2 26 324-349 4-29 (186)
384 2ixe_A Antigen peptide transpo 89.8 0.15 5E-06 53.5 3.0 22 326-347 47-68 (271)
385 3kjh_A CO dehydrogenase/acetyl 89.8 0.26 9E-06 50.6 4.9 65 402-475 130-194 (254)
386 2ihy_A ABC transporter, ATP-bi 89.8 0.15 5E-06 53.7 3.0 22 326-347 49-70 (279)
387 1ukz_A Uridylate kinase; trans 89.8 0.2 6.8E-06 49.8 3.8 30 321-350 12-41 (203)
388 2bbw_A Adenylate kinase 4, AK4 89.8 0.16 5.6E-06 52.3 3.2 27 324-350 27-53 (246)
389 2yz2_A Putative ABC transporte 89.7 0.15 5.2E-06 53.3 3.0 21 326-346 35-55 (266)
390 2nq2_C Hypothetical ABC transp 89.6 0.15 5.2E-06 52.7 2.9 22 326-347 33-54 (253)
391 2jaq_A Deoxyguanosine kinase; 89.6 0.15 5.2E-06 50.5 2.8 24 326-349 2-25 (205)
392 2vhj_A Ntpase P4, P4; non- hyd 89.6 0.72 2.4E-05 49.0 8.0 20 327-346 126-145 (331)
393 1xjc_A MOBB protein homolog; s 89.6 0.18 6.3E-06 48.4 3.2 23 324-346 4-26 (169)
394 1ly1_A Polynucleotide kinase; 89.5 0.19 6.5E-06 48.7 3.4 22 325-346 3-24 (181)
395 1jjv_A Dephospho-COA kinase; P 89.5 0.19 6.4E-06 50.1 3.4 25 325-350 3-27 (206)
396 3dl0_A Adenylate kinase; phosp 89.5 0.17 5.8E-06 50.9 3.1 26 325-350 1-26 (216)
397 3fb4_A Adenylate kinase; psych 89.5 0.15 5.3E-06 51.2 2.8 26 325-350 1-26 (216)
398 3t61_A Gluconokinase; PSI-biol 89.5 0.17 5.8E-06 50.3 3.0 26 324-349 18-43 (202)
399 1ex7_A Guanylate kinase; subst 89.5 0.17 5.8E-06 49.6 2.9 21 327-347 4-24 (186)
400 3vaa_A Shikimate kinase, SK; s 89.5 0.17 5.7E-06 50.3 2.9 26 324-349 25-50 (199)
401 2rhm_A Putative kinase; P-loop 89.5 0.22 7.5E-06 48.9 3.8 26 324-349 5-30 (193)
402 2qt1_A Nicotinamide riboside k 89.4 0.23 7.9E-06 49.5 4.0 26 322-347 19-44 (207)
403 3zvl_A Bifunctional polynucleo 89.4 1.1 3.8E-05 50.0 10.0 24 323-346 257-280 (416)
404 3tqc_A Pantothenate kinase; bi 89.4 0.21 7.2E-06 53.5 3.8 27 321-347 89-115 (321)
405 2pt7_A CAG-ALFA; ATPase, prote 89.3 0.16 5.4E-06 55.0 2.8 21 326-346 173-193 (330)
406 2jeo_A Uridine-cytidine kinase 89.3 0.21 7E-06 51.5 3.6 27 323-349 24-50 (245)
407 1odf_A YGR205W, hypothetical 3 89.3 0.22 7.5E-06 52.7 3.8 25 322-346 29-53 (290)
408 3uie_A Adenylyl-sulfate kinase 89.2 0.22 7.7E-06 49.4 3.7 24 323-346 24-47 (200)
409 2ph1_A Nucleotide-binding prot 89.1 0.56 1.9E-05 48.7 6.8 68 402-476 127-194 (262)
410 3nh6_A ATP-binding cassette SU 89.0 0.12 4.1E-06 55.1 1.5 22 326-347 82-103 (306)
411 2pjz_A Hypothetical protein ST 89.0 0.18 6.3E-06 52.4 3.0 22 326-347 32-53 (263)
412 2bbs_A Cystic fibrosis transme 88.9 0.19 6.5E-06 53.1 3.0 21 326-346 66-86 (290)
413 2gza_A Type IV secretion syste 88.9 0.17 5.9E-06 55.4 2.8 21 326-346 177-197 (361)
414 3jvv_A Twitching mobility prot 88.9 0.2 6.8E-06 54.7 3.2 21 326-346 125-145 (356)
415 1zd8_A GTP:AMP phosphotransfer 88.8 0.21 7.2E-06 50.7 3.2 26 324-349 7-32 (227)
416 3lnc_A Guanylate kinase, GMP k 88.8 0.13 4.6E-06 52.3 1.7 23 325-347 28-51 (231)
417 1aky_A Adenylate kinase; ATP:A 88.8 0.2 6.7E-06 50.6 2.9 27 323-349 3-29 (220)
418 1uf9_A TT1252 protein; P-loop, 88.7 0.26 9E-06 48.8 3.8 25 323-347 7-31 (203)
419 4a74_A DNA repair and recombin 88.7 0.2 7E-06 50.7 3.0 21 326-346 27-47 (231)
420 3trf_A Shikimate kinase, SK; a 88.6 0.2 6.8E-06 48.9 2.8 26 324-349 5-30 (185)
421 1nks_A Adenylate kinase; therm 88.6 0.25 8.4E-06 48.4 3.5 24 325-348 2-25 (194)
422 1y63_A LMAJ004144AAA protein; 88.6 0.24 8.4E-06 48.3 3.4 24 324-347 10-33 (184)
423 2v54_A DTMP kinase, thymidylat 88.6 0.25 8.6E-06 49.0 3.5 25 324-348 4-28 (204)
424 1rz3_A Hypothetical protein rb 88.6 0.28 9.5E-06 48.7 3.8 24 323-346 21-44 (201)
425 2cdn_A Adenylate kinase; phosp 88.5 0.23 7.9E-06 49.2 3.2 29 321-349 17-45 (201)
426 3tlx_A Adenylate kinase 2; str 88.5 0.23 8E-06 51.0 3.3 28 322-349 27-54 (243)
427 4e22_A Cytidylate kinase; P-lo 88.4 0.24 8.2E-06 51.3 3.3 27 324-350 27-53 (252)
428 3tui_C Methionine import ATP-b 88.4 0.21 7.2E-06 54.4 2.9 21 326-346 56-76 (366)
429 1sq5_A Pantothenate kinase; P- 88.3 0.28 9.5E-06 52.5 3.9 25 323-347 79-103 (308)
430 2yvu_A Probable adenylyl-sulfa 88.2 0.3 1E-05 47.7 3.8 24 323-346 12-35 (186)
431 1qhx_A CPT, protein (chloramph 88.1 0.26 8.9E-06 47.7 3.2 24 325-348 4-27 (178)
432 2ehv_A Hypothetical protein PH 88.1 0.22 7.6E-06 51.2 2.9 21 326-346 32-52 (251)
433 2wwf_A Thymidilate kinase, put 88.1 0.26 9E-06 49.2 3.3 24 323-346 9-32 (212)
434 1tev_A UMP-CMP kinase; ploop, 88.1 0.24 8.3E-06 48.6 3.0 26 324-349 3-28 (196)
435 3ec2_A DNA replication protein 88.0 0.21 7.3E-06 48.5 2.5 22 325-346 39-60 (180)
436 2kjq_A DNAA-related protein; s 88.0 0.22 7.4E-06 46.9 2.5 21 326-346 38-58 (149)
437 2oap_1 GSPE-2, type II secreti 88.0 0.21 7.3E-06 57.3 2.9 21 326-346 262-282 (511)
438 1lw7_A Transcriptional regulat 88.0 0.2 6.7E-06 55.1 2.5 24 325-348 171-194 (365)
439 2c95_A Adenylate kinase 1; tra 87.9 0.26 8.8E-06 48.5 3.1 27 323-349 8-34 (196)
440 2ewv_A Twitching motility prot 87.9 0.24 8.3E-06 54.5 3.1 22 325-346 137-158 (372)
441 4a1f_A DNAB helicase, replicat 87.8 2 7E-05 46.1 10.3 27 484-513 181-207 (338)
442 1nn5_A Similar to deoxythymidy 87.8 0.28 9.7E-06 49.0 3.3 25 323-347 8-32 (215)
443 1kht_A Adenylate kinase; phosp 87.8 0.28 9.5E-06 48.0 3.2 25 325-349 4-28 (192)
444 2pt5_A Shikimate kinase, SK; a 87.7 0.25 8.5E-06 47.3 2.8 24 326-349 2-25 (168)
445 3fvq_A Fe(3+) IONS import ATP- 87.7 0.25 8.6E-06 53.6 3.0 22 326-347 32-53 (359)
446 3la6_A Tyrosine-protein kinase 87.5 0.74 2.5E-05 48.5 6.5 68 403-478 201-268 (286)
447 1vht_A Dephospho-COA kinase; s 87.4 0.32 1.1E-05 48.9 3.5 23 324-346 4-26 (218)
448 2plr_A DTMP kinase, probable t 87.4 0.32 1.1E-05 48.5 3.5 25 325-349 5-29 (213)
449 1e4v_A Adenylate kinase; trans 87.4 0.29 1E-05 49.1 3.2 25 325-349 1-25 (214)
450 1uj2_A Uridine-cytidine kinase 87.3 0.32 1.1E-05 50.3 3.5 28 322-349 20-47 (252)
451 1via_A Shikimate kinase; struc 87.3 0.24 8.2E-06 47.9 2.4 24 326-349 6-29 (175)
452 1z47_A CYSA, putative ABC-tran 87.2 0.27 9.2E-06 53.4 2.9 22 326-347 43-64 (355)
453 2vp4_A Deoxynucleoside kinase; 87.1 0.31 1.1E-05 49.6 3.2 26 322-347 18-43 (230)
454 1p9r_A General secretion pathw 87.1 0.27 9.3E-06 54.8 3.0 21 326-346 169-189 (418)
455 3iij_A Coilin-interacting nucl 87.0 0.29 1E-05 47.5 2.8 25 324-348 11-35 (180)
456 2yyz_A Sugar ABC transporter, 87.0 0.28 9.7E-06 53.4 2.9 22 326-347 31-52 (359)
457 1zak_A Adenylate kinase; ATP:A 86.8 0.28 9.6E-06 49.5 2.7 25 325-349 6-30 (222)
458 3rlf_A Maltose/maltodextrin im 86.8 0.29 1E-05 53.6 2.9 22 326-347 31-52 (381)
459 2b8t_A Thymidine kinase; deoxy 86.7 2.5 8.5E-05 42.5 9.6 22 325-346 13-34 (223)
460 2it1_A 362AA long hypothetical 86.7 0.3 1E-05 53.3 2.9 22 326-347 31-52 (362)
461 1qf9_A UMP/CMP kinase, protein 86.7 0.39 1.3E-05 47.0 3.5 25 325-349 7-31 (194)
462 3be4_A Adenylate kinase; malar 86.5 0.3 1E-05 49.1 2.7 25 325-349 6-30 (217)
463 1g29_1 MALK, maltose transport 86.5 0.31 1.1E-05 53.4 2.9 22 326-347 31-52 (372)
464 2pbr_A DTMP kinase, thymidylat 86.4 0.36 1.2E-05 47.3 3.2 21 326-346 2-22 (195)
465 1v43_A Sugar-binding transport 86.3 0.32 1.1E-05 53.2 2.9 22 326-347 39-60 (372)
466 3sr0_A Adenylate kinase; phosp 86.3 0.32 1.1E-05 48.5 2.8 26 325-350 1-26 (206)
467 2pez_A Bifunctional 3'-phospho 86.3 0.41 1.4E-05 46.3 3.5 23 324-346 5-27 (179)
468 2vli_A Antibiotic resistance p 86.2 0.28 9.5E-06 47.7 2.2 25 325-349 6-30 (183)
469 3kta_A Chromosome segregation 86.2 0.36 1.2E-05 46.8 3.0 23 326-348 28-50 (182)
470 1gvn_B Zeta; postsegregational 86.1 0.42 1.4E-05 50.5 3.7 26 323-348 32-57 (287)
471 1gtv_A TMK, thymidylate kinase 86.1 0.19 6.6E-06 50.3 1.0 21 326-346 2-22 (214)
472 2bwj_A Adenylate kinase 5; pho 86.0 0.35 1.2E-05 47.7 2.8 26 324-349 12-37 (199)
473 3hr8_A Protein RECA; alpha and 85.9 1.8 6.3E-05 46.8 8.7 21 326-346 63-83 (356)
474 2p5t_B PEZT; postsegregational 85.9 0.33 1.1E-05 50.2 2.7 26 323-348 31-56 (253)
475 3a4m_A L-seryl-tRNA(SEC) kinas 85.8 0.4 1.4E-05 49.8 3.3 23 324-346 4-26 (260)
476 1zuh_A Shikimate kinase; alpha 85.8 0.36 1.2E-05 46.2 2.7 25 325-349 8-32 (168)
477 2xb4_A Adenylate kinase; ATP-b 85.6 0.37 1.3E-05 48.8 2.8 24 326-349 2-25 (223)
478 3r20_A Cytidylate kinase; stru 85.5 0.37 1.3E-05 48.9 2.8 27 323-349 8-34 (233)
479 1ak2_A Adenylate kinase isoenz 85.4 0.41 1.4E-05 48.8 3.0 27 323-349 15-41 (233)
480 3gd7_A Fusion complex of cysti 85.3 0.39 1.3E-05 52.9 3.0 21 326-346 49-69 (390)
481 2z0h_A DTMP kinase, thymidylat 85.2 0.44 1.5E-05 46.8 3.1 22 326-347 2-23 (197)
482 3d31_A Sulfate/molybdate ABC t 85.1 0.27 9.3E-06 53.3 1.6 22 326-347 28-49 (348)
483 2grj_A Dephospho-COA kinase; T 85.0 0.49 1.7E-05 46.5 3.3 28 322-349 10-37 (192)
484 2ze6_A Isopentenyl transferase 84.9 0.38 1.3E-05 49.8 2.6 24 326-349 3-26 (253)
485 2zr9_A Protein RECA, recombina 84.9 2 6.8E-05 46.6 8.4 21 326-346 63-83 (349)
486 3nwj_A ATSK2; P loop, shikimat 84.9 0.37 1.3E-05 49.7 2.4 24 326-349 50-73 (250)
487 2iyv_A Shikimate kinase, SK; t 84.8 0.35 1.2E-05 47.0 2.2 24 326-349 4-27 (184)
488 1e6c_A Shikimate kinase; phosp 84.7 0.37 1.3E-05 46.2 2.3 24 326-349 4-27 (173)
489 2npi_A Protein CLP1; CLP1-PCF1 84.6 0.41 1.4E-05 54.1 2.8 22 326-347 140-161 (460)
490 1m7g_A Adenylylsulfate kinase; 84.6 0.48 1.6E-05 47.4 3.1 24 323-346 24-47 (211)
491 2x8a_A Nuclear valosin-contain 84.5 0.45 1.5E-05 49.9 2.9 21 327-347 47-67 (274)
492 1zcb_A G alpha I/13; GTP-bindi 84.4 0.52 1.8E-05 51.4 3.5 24 322-345 31-54 (362)
493 1f2t_A RAD50 ABC-ATPase; DNA d 84.3 0.5 1.7E-05 44.3 2.9 20 327-346 26-45 (149)
494 2f6r_A COA synthase, bifunctio 84.3 0.58 2E-05 49.2 3.7 23 323-345 74-96 (281)
495 3bh0_A DNAB-like replicative h 84.2 8.4 0.00029 40.9 12.9 20 327-346 71-90 (315)
496 1oxx_K GLCV, glucose, ABC tran 83.8 0.27 9.4E-06 53.5 0.9 22 326-347 33-54 (353)
497 3umf_A Adenylate kinase; rossm 83.7 0.66 2.3E-05 46.6 3.6 28 323-350 28-55 (217)
498 2obl_A ESCN; ATPase, hydrolase 83.6 0.56 1.9E-05 50.9 3.3 21 326-346 73-93 (347)
499 2w0m_A SSO2452; RECA, SSPF, un 83.6 0.52 1.8E-05 47.6 2.9 21 326-346 25-45 (235)
500 4eaq_A DTMP kinase, thymidylat 83.4 0.73 2.5E-05 46.8 3.9 25 323-347 25-49 (229)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.9e-68 Score=610.42 Aligned_cols=414 Identities=25% Similarity=0.390 Sum_probs=387.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|+|||||+|+|++.++.+.++.+.++.+++...|+ ++++++|++|.+++|+++|+|++..+..+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~--~~~~~a~~~d~~~~er~~GiTid~~~~~~ 90 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNR--ETWYLSWALDTNQEERDKGKTVEVGRAYF 90 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccc--cchhhhhhhccchhHhhcCceEEEeEEEE
Confidence 4567899999999999999999999999999999999999999999888 78999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc--
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI-- 477 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~-- 477 (967)
++++++++|||||||++|.++|..+++.+|++|||||++++.+++++...+|+++|+.++..++++++|+|+||||+.
T Consensus 91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 999999999999999999999999999999999999999977766666678999999999999999999999999994
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCc---cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEE
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQ---NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQ 554 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~---~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~ 554 (967)
++++.+++++.+++..+++.+++. +++++|+||++|.|++++.+.++||.|++|++.|+.++++....++|++++|+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~ 250 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIV 250 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEE
Confidence 467788899999999999999884 57899999999999999999999999999999999999888888899999999
Q ss_pred EeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEc--cccCCCCCcccc
Q psy3751 555 LVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIK--EYLDISRGNMLV 632 (967)
Q Consensus 555 ~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~--~~~~i~~G~vl~ 632 (967)
++++ +.| ++++|+|++|+|++||.|.+.|.+.+++|++|++++.++++|.|||+|+++|+ +..+++|||+|+
T Consensus 251 ~~~~--~~G----~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~ 324 (439)
T 3j2k_7 251 DKYK--DMG----TVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILC 324 (439)
T ss_pred EEEc--CCC----eEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEec
Confidence 9986 344 89999999999999999999999999999999999999999999999999998 467899999999
Q ss_pred cCCCCccccceeEEEEEEeccc-cccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecC
Q psy3751 633 SPFKRPVSLRSINANLCWLSEE-SLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYE 709 (967)
Q Consensus 633 ~~~~~~~~~~~f~a~i~~~~~~-~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~ 709 (967)
++++++..+..|+|+|.||++. ++.+|+++++|+|+.+++|+|.+|.+++|.+|++.. +|++|+.||.+.|+|++.+
T Consensus 325 ~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~ 404 (439)
T 3j2k_7 325 DPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAG 404 (439)
T ss_pred CCCCCCceeeEEEEEEEEeCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCC
Confidence 9988888999999999999984 699999999999999999999999999999998754 6789999999999999999
Q ss_pred ceeeccccCccCCccceeecccccccceEEEEEe
Q psy3751 710 PISVDSYDNIRSTGSFILIDEITFQTVAAVYIIG 743 (967)
Q Consensus 710 pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg 743 (967)
|+|+|+|++++.+|||+|||+ ++|+|.|.++.
T Consensus 405 p~~~e~~~~~~~~g~f~l~d~--~~tv~~G~i~~ 436 (439)
T 3j2k_7 405 TICLETFKDFPQMGRFTLRDE--GKTIAIGKVLK 436 (439)
T ss_pred eEEEeeccccccCCCEEEEEC--CceEEEEEEEE
Confidence 999999999999999999995 79999888764
No 2
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=8.6e-65 Score=583.17 Aligned_cols=411 Identities=48% Similarity=0.762 Sum_probs=364.7
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.++.+||+++||+|||||||+++|++..+.+..+++.++.+++...++++..+++++.+|.+++|+++|+|++.++..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35678999999999999999999999999888888888888888889989999999999999999999999999999999
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
+++.+++|||||||++|..++..+++.+|++|||||+++ +.+.|+++|+.++..++++++|+|+||+|+.+++
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~-------g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY-------GVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT-------CSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 999999999999999999999999999999999999999 8889999999999999998899999999999877
Q ss_pred HHHHHHHHHHHHHHHHHcC--CccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeec
Q psy3751 481 QIFYKRIVYAYKKFAEDIH--FQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVAR 558 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~--~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~ 558 (967)
+++++++.++++.+++.++ ..+.+++++||++|.|++++++.++||.|++|.++|+.++.+....++|++++|+++++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~ 253 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNR 253 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEec
Confidence 7788888899999999888 56679999999999999999999999999999999999988887788999999999998
Q ss_pred CCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEccccCCCCCcccccCCCCc
Q psy3751 559 HCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGNMLVSPFKRP 638 (967)
Q Consensus 559 ~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~~~ 638 (967)
..+.+ +++.|+|.+|+|++||.|.+.|.++..+|++|+++++++++|.|||+|++++++..++++||+|++++.+|
T Consensus 254 ~~~~~----~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~~~ 329 (434)
T 1zun_B 254 PNLNF----RGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMEDEIDISRGDLLVHADNVP 329 (434)
T ss_dssp SSSSC----CEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESSCCCCCTTCEEEETTSCC
T ss_pred cCCCc----eEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCCccccCCccEEECCCCCC
Confidence 76554 78999999999999999999999999999999999999999999999999999877899999999998888
Q ss_pred cccceeEEEEEEeccccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccC
Q psy3751 639 VSLRSINANLCWLSEESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDN 718 (967)
Q Consensus 639 ~~~~~f~a~i~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~ 718 (967)
..++.|+|++.||+..++.+|+++++|+|+.+++|+|..+.+++|.++++..+++.|++||.+.|+|++.+|+++++|.+
T Consensus 330 ~~~~~f~a~~~~l~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~~~~ 409 (434)
T 1zun_B 330 QVSDAFDAMLVWMAEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSS 409 (434)
T ss_dssp CEEEEEEEEEEECCSSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCCTTT
T ss_pred CcccEEEEEEEEeccccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEccccc
Confidence 99999999999998889999999999999999999999999999999998777899999999999999999999999999
Q ss_pred ccCCccceeecccccccceEEEEE
Q psy3751 719 IRSTGSFILIDEITFQTVAAVYII 742 (967)
Q Consensus 719 ~~~~grfil~d~~~~~~~~~~~~v 742 (967)
++.+|||+|||+.+++|+|.|.|.
T Consensus 410 ~~~~grf~l~d~~~~~tv~~G~i~ 433 (434)
T 1zun_B 410 NRTTGAFIVIDRLTNGTVAAGMII 433 (434)
T ss_dssp CTTTTEEEEECTTTCCEEEEEEEE
T ss_pred CCccceEEEEECCCCcEEEEEEEe
Confidence 999999999999899999998875
No 3
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=1.3e-63 Score=580.82 Aligned_cols=419 Identities=28% Similarity=0.402 Sum_probs=356.8
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.++.+||+++|++|+|||||+|+|++.++.+..+.+.++.+.+...|+ .+++++|++|.+..|+++|+|++..+..++
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~--~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 107 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGK--SSFKFAWIMDQTNEERERGVTVSICTSHFS 107 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC--------------------------CCSSCCCCEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCC--CcchhhhhhccchhHhhcCcceEeeeEEEe
Confidence 467899999999999999999999999999999999999999988887 779999999999999999999999999999
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
+++..++|||||||++|..++..+++.+|++|||||++++.++....+..|+++|+.++..++++++|||+||||+.+++
T Consensus 108 ~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 108 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTC
T ss_pred cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccch
Confidence 99999999999999999999999999999999999999977777777889999999999999998899999999999988
Q ss_pred HHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccC---CCCCCCCcHHHHhhcc----cC--CCcCCCCCc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNN---MLWYNGPTLISLLESL----NT--NEKIDKKPL 549 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~---~~w~~~~~L~~~l~~~----~~--~~~~~~~~~ 549 (967)
+.+++++.+++..+++.+++. +++++++||++|.|+++++.. ++||.|++|+++|+.+ +. |....++|+
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~ 267 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 267 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCce
Confidence 899999999999999988875 679999999999999999876 7899999999999887 22 445678899
Q ss_pred eeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc--------cccceeecCCeEEEEEcc
Q psy3751 550 RFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN--------KSLDMAITGQSVTLIIKE 621 (967)
Q Consensus 550 ~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~--------~~v~~a~~G~~v~l~l~~ 621 (967)
+|+|+++++..+.. +.+++++|+|++|+|++||.|.+.|.+.+++|++|++++ .++++|.|||+|+|++++
T Consensus 268 r~~v~~v~~~~~~~-g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~ 346 (483)
T 3p26_A 268 LFSVLEIIPSKKTS-NDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 346 (483)
T ss_dssp EEEEEEEEC---CC-SCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEES
T ss_pred EEEEEEEEccCCcC-CCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEe
Confidence 99999999976310 123899999999999999999999999999999999995 799999999999999986
Q ss_pred --ccCCCCCcccccCCC-CccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCcc-CCCcccc
Q psy3751 622 --YLDISRGNMLVSPFK-RPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKW-CPPKLLD 696 (967)
Q Consensus 622 --~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~-~~~~~l~ 696 (967)
..+++|||+|++++. ++..+..|+|++.||++ .+|.+|+++++|+|+.+++|+|.+|.+++|.+|++. .+|++|+
T Consensus 347 ~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~~~l~ 426 (483)
T 3p26_A 347 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLG 426 (483)
T ss_dssp CCGGGCCTTCEEECTTCCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCCSCBC
T ss_pred cccccCCceEEEEcCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCccCcC
Confidence 478999999999877 89999999999999975 799999999999999999999999999999998875 3688999
Q ss_pred CCCEEEEEEee---cCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 697 LNDIGCVTINI---YEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 697 ~g~~a~v~l~l---~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
+||.|.|+|++ .+|+|+++|.+++.+|||+||+ +++|+|.|.|...
T Consensus 427 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~--~~~tv~~G~i~~~ 475 (483)
T 3p26_A 427 SKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK--DGRTIAAGKISEI 475 (483)
T ss_dssp SSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEE--TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEe--CCCEEEEEEEEEe
Confidence 99999999999 7899999999999999999988 6899999888764
No 4
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=1.8e-63 Score=573.78 Aligned_cols=418 Identities=29% Similarity=0.481 Sum_probs=384.0
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.++.++|+++||+|||||||+|+|++.++.++.+.+.++.+++...|+ +++++++++|..++|+++|+|++..+..++
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~--~~~~~a~~~d~~~~er~~GiTi~~~~~~~~ 81 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGK--GSFKYAWVLDKLKAERERGITIDIALWKFE 81 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSS--SCCCHHHHHHHHHHHHHTTCCCSCSCEEEE
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCC--cchhhhhhhccchhHHhcCcEEEEEEEEEe
Confidence 346799999999999999999999999899999999999999988887 678999999999999999999999999999
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
+++++++|||||||++|.+++..+++.+|++|||||++++.++.++....|+++|+.++..++++++|+|+||||+.+++
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTC
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCC
Confidence 99999999999999999999999999999999999999822211112233999999999999998899999999999877
Q ss_pred HHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCC------------CCcHHHHhhcccCCCcCCC
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYN------------GPTLISLLESLNTNEKIDK 546 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~------------~~~L~~~l~~~~~~~~~~~ 546 (967)
+++++++.++++.+++.+++. +++++|+||++|.|+.++...++||. +++|++.|+.+++|....+
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~ 241 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTD 241 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccCCCcccCC
Confidence 888889999999999998874 47999999999999999999999997 6789999999988888888
Q ss_pred CCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccC
Q psy3751 547 KPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLD 624 (967)
Q Consensus 547 ~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~ 624 (967)
+|++|+|+++|++.+.| ++++|+|++|.+++||+|.+.|.+..++|++|++++.++++|.|||+|++.+++ ..+
T Consensus 242 ~p~r~~i~~v~~~~g~G----~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~ 317 (458)
T 1f60_A 242 KPLRLPLQDVYKIGGIG----TVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKE 317 (458)
T ss_dssp SCCEEEEEEEEEETTTE----EEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTT
T ss_pred CCcEEEEEEEEEeCCCc----EEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccc
Confidence 99999999999999887 999999999999999999999999999999999999999999999999999975 578
Q ss_pred CCCCcccccCCC-CccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCE
Q psy3751 625 ISRGNMLVSPFK-RPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDI 700 (967)
Q Consensus 625 i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~ 700 (967)
+++||+|++++. ++..+.+|+|++.||++ .+|.+|+++++|+||.+++|+|..|.+++|.+|++.. +|+.|++||.
T Consensus 318 i~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~ 397 (458)
T 1f60_A 318 IRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDA 397 (458)
T ss_dssp SCTTCEEEETTSSCCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCE
T ss_pred cCceeEEecCCCCCCceeeEEEEEEEEeCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCE
Confidence 999999999864 88999999999999985 7999999999999999999999999999999988754 6899999999
Q ss_pred EEEEEeecCceeeccccCccCCccceeecccccccceEEEEEecCC
Q psy3751 701 GCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 701 a~v~l~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
+.|+|++.+|+++++|.+++.+|||+||| .++|+|.|.|+.+-+
T Consensus 398 ~~v~~~~~~p~~~~~~~~~~~~grf~lr~--~~~tv~~G~v~~~~~ 441 (458)
T 1f60_A 398 ALVKFVPSKPMCVEAFSEYPPLGRFAVRD--MRQTVAVGVIKSVDK 441 (458)
T ss_dssp EEEEEEESSCCCCCCTTTCGGGSEEEEEE--TTEEEEEEEEEEEEC
T ss_pred EEEEEEECCeEEEecCccCCCCCcEEEEE--CCeEEEEEEEEeecc
Confidence 99999999999999999999999999998 479999999988765
No 5
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-63 Score=587.36 Aligned_cols=420 Identities=28% Similarity=0.400 Sum_probs=385.2
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++|++|+|||||+|+|++..+.+..+.+.++.+.+...|+ ++++++|++|.+..|+++|+|++..+..+
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~--~~~~~a~~~d~~~~e~~~GiTid~~~~~~ 240 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGK--SSFKFAWIMDQTNEERERGVTVSICTSHF 240 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSS--SCCSSSHHHHHHHHHHHTTTCCSCSCCEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccc--cccceeeeeccchhhhhCCeeEeeeeEEE
Confidence 3567899999999999999999999999999999999999999998887 77999999999999999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
.+++.+++|||||||++|.+++..+++.+|++|+|||++++.|+..+...+|+++|+.++..++++++|||+||||++++
T Consensus 241 ~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 241 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp ECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred ecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 99999999999999999999999999999999999999987677777788999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccC---CCCCCCCcHHHHhhccc--C----CCcCCCCC
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNN---MLWYNGPTLISLLESLN--T----NEKIDKKP 548 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~---~~w~~~~~L~~~l~~~~--~----~~~~~~~~ 548 (967)
++.+++++.+++..+++.+++. +++++++||++|.|+.+++.. ++||.|++|+++|+.+. . |....++|
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p 400 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 400 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccc
Confidence 8889999999999999988874 579999999999999998765 89999999999999882 2 33456789
Q ss_pred ceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc--------cccceeecCCeEEEEEc
Q psy3751 549 LRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN--------KSLDMAITGQSVTLIIK 620 (967)
Q Consensus 549 ~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~--------~~v~~a~~G~~v~l~l~ 620 (967)
++++|+++++..+.. ..++|++|+|.+|+|++||.|.+.|.+.+++|++|++++ .++++|.|||+|+|+|+
T Consensus 401 ~r~~V~~v~~~~~~~-g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~ 479 (611)
T 3izq_1 401 FLFSVLEIIPSKKTS-NDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLR 479 (611)
T ss_dssp CEEECCEEECCSSSC-SSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEES
T ss_pred hhhheeeeeccCccC-CCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEee
Confidence 999999999977310 123899999999999999999999999999999999995 79999999999999998
Q ss_pred c--ccCCCCCcccccCCC-CccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCcc-CCCccc
Q psy3751 621 E--YLDISRGNMLVSPFK-RPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKW-CPPKLL 695 (967)
Q Consensus 621 ~--~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~-~~~~~l 695 (967)
+ ..+++|||+|++++. ++..+..|+|+|.||++ .||.+|+++++|+||.+++|+|..|.+++|.+|++. .+|++|
T Consensus 480 ~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~l 559 (611)
T 3izq_1 480 KAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHL 559 (611)
T ss_dssp SCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCSS
T ss_pred eccHhhCcceEEccCCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCcccc
Confidence 6 478999999999877 89999999999999985 899999999999999999999999999999998875 468899
Q ss_pred cCCCEEEEEEee---cCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 696 DLNDIGCVTINI---YEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 696 ~~g~~a~v~l~l---~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
++||.|.|+|.+ .+|+|+++|++++.+|||+||+ +++|+|.|.|..+
T Consensus 560 ~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~--~~~Tva~G~i~~v 609 (611)
T 3izq_1 560 GSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK--DGRTIAAGKISEI 609 (611)
T ss_dssp SSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEES--SSSEEEEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEe--CCCEEEEEEEEEe
Confidence 999999999999 7899999999999999999987 5899999988764
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=4.5e-63 Score=568.52 Aligned_cols=417 Identities=33% Similarity=0.522 Sum_probs=374.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
++.+||+++||+|||||||+++|++.++.++++.+..+...+...|+ +++++++++|.+++|+++|+|++..+..+++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~--~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGK--ESEKFAFLLDRLKEERERGVTINLTFMRFET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTC--THHHHHHHHHHHHHC-----------CEEEC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCC--cchhhhhhhccChHHHhcCceeEeeEEEEec
Confidence 46799999999999999999999999899999888888888887777 6788899999999999999999999999999
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC--c
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN--Y 479 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~--~ 479 (967)
++..++|||||||++|..++..+++.+|++|+|||++++.|+....+++|+++|+.++..++++++|+|+||||+.+ +
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 99999999999999999999999999999999999999545444448899999999999999988999999999987 5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEee
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~ 557 (967)
++++++.+.++++.+++.+++. +++++++||++|.|+.++.+.++||.|++|++.++.+++|.+..++|+++||+++|
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~ 241 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVY 241 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEE
Confidence 6788889999999999998864 47899999999999999999999999999999999988777666789999999999
Q ss_pred cCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCC
Q psy3751 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPF 635 (967)
Q Consensus 558 ~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~ 635 (967)
+..+.| ++++|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||+|++++++ ..++++||+|++++
T Consensus 242 ~~~~~G----~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~ 317 (435)
T 1jny_A 242 SISGVG----TVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPN 317 (435)
T ss_dssp EETTTE----EEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTT
T ss_pred EeCCCc----EEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCC
Confidence 998877 999999999999999999999999999999999999999999999999999984 56899999999987
Q ss_pred CCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEeecCcee
Q psy3751 636 KRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPIS 712 (967)
Q Consensus 636 ~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l~~pi~ 712 (967)
.++..+..|+|++.||++ .+|.+|+++++|+||.+++|+|..|.+++|.+|++.. +|+.|++||.+.|+|++.+|++
T Consensus 318 ~~~~~~~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~ 397 (435)
T 1jny_A 318 NPPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLC 397 (435)
T ss_dssp SCCCEESEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEE
T ss_pred CCceEeEEEEEEEEEECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEE
Confidence 788999999999999986 8999999999999999999999999999999988754 6899999999999999999999
Q ss_pred eccccCccCCccceeecccccccceEEEEEecCC
Q psy3751 713 VDSYDNIRSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 713 ~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
+++|.+++.+|||+|||. ++|+|.|.|+.+-+
T Consensus 398 ~~~~~~~~~~grf~lr~~--~~tv~~G~i~~~~~ 429 (435)
T 1jny_A 398 VEKYNEFPPLGRFAMRDM--GKTVGVGIIVDVKP 429 (435)
T ss_dssp CCCTTTSGGGTEEEEEET--TEEEEEEEEEEEEC
T ss_pred EecCCcCCcCccEEEEEC--CeEEEEEEEeeecC
Confidence 999999999999999995 78999999987654
No 7
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=9.4e-64 Score=577.58 Aligned_cols=413 Identities=26% Similarity=0.399 Sum_probs=340.4
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.++.+||+++||+|||||||+++|++.++.++++.+.++.+++...|+ .++++++++|..++|+++|+|++..+..++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~--~~~~~~~~~D~~~~er~~giTi~~~~~~~~ 117 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGK--ESWYLSWALDSTSEEREKGKTVEVGRAYFE 117 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEE
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCC--cchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence 467899999999999999999999999999999999998888887776 678899999999999999999999999999
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc--C
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI--N 478 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~--~ 478 (967)
+++++++|||||||++|.+++..+++.+|++|||||++++.++.++...+|+++|+.++..++++++|||+||||+. +
T Consensus 118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 99999999999999999999999999999999999999944333334458999999999999998899999999994 4
Q ss_pred cCHHHHHHHHHHHHHHHHHc-CCc---cceEEeccccCCCccccccc--CCCCCCCCcHHHHhhcccCCCcCCCCCceee
Q psy3751 479 YNQIFYKRIVYAYKKFAEDI-HFQ---NINTIPISALNGDNIISASN--NMLWYNGPTLISLLESLNTNEKIDKKPLRFP 552 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~-~~~---~~~ii~iSa~~g~gi~~l~~--~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~ 552 (967)
+++++++.+.+++..+++.+ ++. +++++|+||++|.|+.++.+ .++||.|++|++.|+.++.+.+..++||+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~ 277 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMP 277 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEE
Confidence 67888899999999999888 876 68999999999999999884 6899999999999999988877778999999
Q ss_pred EEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeC-ccccceeecCCeEEEEEcc-ccCCCCCcc
Q psy3751 553 VQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQML-NKSLDMAITGQSVTLIIKE-YLDISRGNM 630 (967)
Q Consensus 553 i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~-~~~v~~a~~G~~v~l~l~~-~~~i~~G~v 630 (967)
|+++++. .| ++++|+|.+|+|++||.|.+.|.+..++|++|+++ +.++++|.|||+|+++|++ ..+++|||+
T Consensus 278 v~~~~~~--~G----~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g~~~~i~rG~v 351 (467)
T 1r5b_A 278 IASKYKD--LG----TILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYV 351 (467)
T ss_dssp CCEEEES--SS----EEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEESCCTTCCTTCE
T ss_pred EEEEEeC--CC----eEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEeccHhhCCceEE
Confidence 9999874 34 89999999999999999999999999999999998 8999999999999999985 778999999
Q ss_pred cccCCCCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCCEEEEEEee
Q psy3751 631 LVSPFKRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINI 707 (967)
Q Consensus 631 l~~~~~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~~a~v~l~l 707 (967)
|++++.++..+..|+|++.||++ .+|.+|+++++|+|+.+++|+|..|.+++|. +++.. +|++|++||.+.|+|++
T Consensus 352 l~~~~~~~~~~~~f~a~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~ 430 (467)
T 1r5b_A 352 LTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELET 430 (467)
T ss_dssp EECSSSCCCEEEEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEE
T ss_pred EeCCCCCCccceEEEEEEEEeCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEE
Confidence 99988889999999999999987 6799999999999999999999999999998 66543 68899999999999999
Q ss_pred cCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 708 YEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 708 ~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
.+|+++++|.+++.+|||+|||. ++|+|.|.|+.+
T Consensus 431 ~~p~~~~~~~~~~~~grf~lrd~--~~Tv~~G~i~~~ 465 (467)
T 1r5b_A 431 QTPVCMERFEDYQYMGRFTLRDQ--GTTVAVGKVVKI 465 (467)
T ss_dssp EEEEECCCTTTCHHHHEEEEECS--SSCEEEEEEEEE
T ss_pred CcEEEEEEcCcCCCCccEEEEEC--CeEEEEEEEEEe
Confidence 99999999999999999999985 689999988754
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-62 Score=576.54 Aligned_cols=410 Identities=27% Similarity=0.406 Sum_probs=319.7
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
...++.+||+++||+|||||||+|+|++.++.+..+.+.++.+.+...|+ .+++++|++|.+.+|+++|+|++..+..
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~--~~~~~~~~~D~~~~E~~~GiTid~~~~~ 249 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGK--GSFSYAWLLDTTEEERARGVTMDVASTT 249 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCC--cchhhhhhhccchhhhcCCeeEEeeEEE
Confidence 35678899999999999999999999999999999999999998888887 6799999999999999999999999999
Q ss_pred eecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC
Q psy3751 399 FNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 399 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~ 478 (967)
+.++++.++|||||||++|.++|..+++.+|++|||||++++.|+.++..++|+++|+.++..++++++|||+||||+++
T Consensus 250 ~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 250 FESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ---------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred EEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 99999999999999999999999999999999999999999777665555899999999999999988999999999998
Q ss_pred cCHHHHHHHHHHHHHHH-HHcCCc--cceEEeccccCCCccccccc--CCCCCCCCcHHHHhhcccCCCcCCCCCceeeE
Q psy3751 479 YNQIFYKRIVYAYKKFA-EDIHFQ--NINTIPISALNGDNIISASN--NMLWYNGPTLISLLESLNTNEKIDKKPLRFPV 553 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~-~~~~~~--~~~ii~iSa~~g~gi~~l~~--~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i 553 (967)
+++++++.+.+++..++ +.+++. +++++++||++|.|+.++.. .++||.|++|++.|..+.++....++||+++|
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v 409 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSI 409 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccccccccchhee
Confidence 88889999999999998 888874 67899999999999998775 58999999999999998777777889999999
Q ss_pred EEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccc-eeecCCeEEEEEcc--ccCCCCCcc
Q psy3751 554 QLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLD-MAITGQSVTLIIKE--YLDISRGNM 630 (967)
Q Consensus 554 ~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~-~a~~G~~v~l~l~~--~~~i~~G~v 630 (967)
+++++. +.| ++++|+|.+|+|++||.|.+.|.+..++|++|++++.+++ +|.||++|+|+|.+ ..+++|||+
T Consensus 410 ~~v~~~-~~g----~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~v 484 (592)
T 3mca_A 410 DDVYRS-PRS----VTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDI 484 (592)
T ss_dssp EEEEEE-TTE----EEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCE
T ss_pred eEEEec-CCe----EEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEE
Confidence 999998 776 8999999999999999999999999999999999999999 99999999999986 568999999
Q ss_pred cccCCCCccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEe-ec
Q psy3751 631 LVSPFKRPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTIN-IY 708 (967)
Q Consensus 631 l~~~~~~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~-l~ 708 (967)
|++++.++..+..|+|++.||++ .|+.+|+++++|+||.+++|+| .|.+. ...++++|++||.+.|+|+ +.
T Consensus 485 l~~~~~~~~~~~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~------~~~~~~~l~~gd~~~v~l~fl~ 557 (592)
T 3mca_A 485 LSNYENPVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVTV------NNKRSRHIASRKRALVRISFLD 557 (592)
T ss_dssp EECSSSCCEEESEEEEEEEECSCSSCEETTEEEEEECSSCEEEEEE-EEEES------SSSCCSEECSSCEEEEEEEESS
T ss_pred eccCCCCccccCeEEEEEEEECCCccCCCCCEEEEEEcCcEEEEEE-EEEec------cccchhccCCCCEEEEEEEECC
Confidence 99998888999999999999997 8999999999999999999999 77541 1236789999999999999 99
Q ss_pred CceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 709 EPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 709 ~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
+|+++++|++++.+|||+||+ +++|+|.|.|..+
T Consensus 558 ~p~~~e~~~~~~~~~rfilr~--~~~Tv~~G~i~~v 591 (592)
T 3mca_A 558 GLFPLCLAEECPALGRFILRR--SGDTVAAGIVKEL 591 (592)
T ss_dssp SCEEECCTTTCHHHHEEEEES--SSSEEEEEEEEEE
T ss_pred CcEEEEeccCCCCCCeEEEEE--CCcEEEEEEEEEc
Confidence 999999999999999999987 5889998888653
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=9.4e-53 Score=477.37 Aligned_cols=371 Identities=22% Similarity=0.303 Sum_probs=321.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.+||+++||+|||||||+++|++.. ...|. ..+...+.+|.+.+|+++|+|++..+..+..+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~--~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 64 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKIL---------------AEGGG--AKFKKYEEIDNAPEERARGITINAAHVEYSTA 64 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHH---------------HHTTS--BCCCCHHHHHSCCEEEETTEEEECEEEEEECS
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChh---------------hhcCc--cccchhhhhhcCHHHHhcCcEEEeeeEEeccC
Confidence 56899999999999999999998721 11121 11222234788899999999999998888888
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
+..++|||||||++|..++..+++.+|++|+|||+++ +.+.|+++|+.++..++++++|+|+||||+.+ +++
T Consensus 65 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~-------g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~ 136 (397)
T 1d2e_A 65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND-------GPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSE 136 (397)
T ss_dssp SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT-------CSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHH
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCC-------CCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHH
Confidence 8999999999999999999999999999999999999 88899999999999999998899999999986 456
Q ss_pred HHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCC--CcHHHHhhc-ccCCCcCCCCCceeeEEEee
Q psy3751 483 FYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNG--PTLISLLES-LNTNEKIDKKPLRFPVQLVA 557 (967)
Q Consensus 483 ~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~--~~L~~~l~~-~~~~~~~~~~~~~~~i~~v~ 557 (967)
.++.+.++++++++.+++. +++++++||++|.|. ..++||.+ ..|++.+.. ++.|.+..++||+++|+++|
T Consensus 137 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~----~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~ 212 (397)
T 1d2e_A 137 MVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ----RDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVY 212 (397)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTT----CCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccc----cCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEE
Confidence 6777888889999988874 579999999999884 34689876 467777665 67777777899999999999
Q ss_pred cCCCccCCCceEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccccc
Q psy3751 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG--KKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVS 633 (967)
Q Consensus 558 ~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~--~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~ 633 (967)
+..+.| ++++|+|.+|+|++||.|.+.|.+ ++.+|++|++++.++++|.|||+|++.+++ ..++++||+|++
T Consensus 213 ~~~~~G----~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~ 288 (397)
T 1d2e_A 213 SIPGRG----TVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAK 288 (397)
T ss_dssp EETTTE----EEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEES
T ss_pred EeCCce----EEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeC
Confidence 998887 899999999999999999999875 789999999999999999999999999984 578999999999
Q ss_pred CCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEee
Q psy3751 634 PFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINI 707 (967)
Q Consensus 634 ~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l 707 (967)
++ ++.++..|+|++.||++ .++.+|+++++|+|+.+++|+|. +.. +++.+++||.+.|+|++
T Consensus 289 ~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~~----------~~~~l~~~~~~~v~~~~ 356 (397)
T 1d2e_A 289 PG-SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LPP----------GKELAMPGEDLKLTLIL 356 (397)
T ss_dssp TT-SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CCS----------SCCCBCTTCEEEEEEEE
T ss_pred CC-CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-EcC----------CcccccCCCEEEEEEEE
Confidence 75 57889999999999986 38999999999999999999987 421 36789999999999999
Q ss_pred cCceeeccccCccCCccceeecccccccceEEEEEecCC
Q psy3751 708 YEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 708 ~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
.+|+|+++ ++||+||+ +++|+|.|.|..+-+
T Consensus 357 ~~p~~~~~------~~r~~lr~--~~~ti~~G~i~~~~~ 387 (397)
T 1d2e_A 357 RQPMILEK------GQRFTLRD--GNRTIGTGLVTDTPA 387 (397)
T ss_dssp EEEECCCT------TCEEEEEE--TTEEEEEEEEEECCC
T ss_pred CCeEEEcc------CCeEEEEe--CCeEEEEEEEeeccc
Confidence 99999998 46999987 679999999988765
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=4.7e-51 Score=465.51 Aligned_cols=377 Identities=22% Similarity=0.326 Sum_probs=320.7
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+++|++. ....|.. ..+...+.+|.+.+|+++|+|++.....+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~---------------~~~~g~~-~~~~~~~~~d~~~~e~~~GiTi~~~~~~~ 70 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYV---------------AAAENPN-VEVKDYGDIDKAPEERARGITINTAHVEY 70 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHH---------------HHHSCTT-SCCCCHHHHSCSHHHHHHTCCCSCEEEEE
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhh---------------hhhcCcc-ccccchhhccCCHHHHHcCCCEEeeeeEe
Confidence 3457799999999999999999999862 0111110 11222235799999999999999988888
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
.+++..++|||||||++|..++..+++.+|++|+|||+++ +.+.|+++|+..+..++++++|+|+||+|+.+
T Consensus 71 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~-------g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~- 142 (405)
T 2c78_A 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-------GPMPQTREHILLARQVGVPYIVVFMNKVDMVD- 142 (405)
T ss_dssp ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT-------CCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-
T ss_pred ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCEEEEEEECccccC-
Confidence 8888999999999999999999999999999999999999 88899999999999999988999999999986
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccc-----cCCCCCCC-CcHHHHhhc-ccCCCcCCCCCce
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISAS-----NNMLWYNG-PTLISLLES-LNTNEKIDKKPLR 550 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~-----~~~~w~~~-~~L~~~l~~-~~~~~~~~~~~~~ 550 (967)
+++.++.+.++++.+++.+++. +.+++++||++|.|+.+.+ ..++||.+ ..|++.+.. +|.|.+..++||+
T Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~ 222 (405)
T 2c78_A 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFL 222 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCE
T ss_pred cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcE
Confidence 4556677778888899888863 5799999999999865432 23567764 356666655 6777777789999
Q ss_pred eeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEeCccccceeecCCeEEEEEcc--ccCC
Q psy3751 551 FPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG---KKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDI 625 (967)
Q Consensus 551 ~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~---~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i 625 (967)
++|+++|+..+.| ++++|+|.+|+|++||.|.+.|.+ .+.+|++|++++.++++|.|||+|++.+++ ..++
T Consensus 223 ~~v~~v~~~~~~G----~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i 298 (405)
T 2c78_A 223 MPVEDVFTITGRG----TVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEV 298 (405)
T ss_dssp EECCEEEEETTTE----EEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTC
T ss_pred EEEEEEEEcCCCc----eEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhc
Confidence 9999999998887 899999999999999999999987 689999999999999999999999999984 5789
Q ss_pred CCCcccccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCC
Q psy3751 626 SRGNMLVSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLND 699 (967)
Q Consensus 626 ~~G~vl~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~ 699 (967)
++||+|++++ ++.+++.|+|++.||++ .++.+|+++++|+|+.+++|+|. +. ..++.+++||
T Consensus 299 ~~G~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~----------~~~~~l~~~~ 366 (405)
T 2c78_A 299 ERGQVLAKPG-SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP----------PGVEMVMPGD 366 (405)
T ss_dssp CTTCEEESTT-SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC----------TTCCCBCTTC
T ss_pred CceEEEEcCC-CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec----------cCccccCCCC
Confidence 9999999985 57889999999999985 38999999999999999999988 42 1356899999
Q ss_pred EEEEEEeecCceeeccccCccCCccceeecccccccceEEEEEec
Q psy3751 700 IGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGA 744 (967)
Q Consensus 700 ~a~v~l~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~ 744 (967)
.+.|+|++.+|+|++++ +||+||+ +++|+|.|.|..+
T Consensus 367 ~~~v~~~~~~p~~~~~~------~rf~lr~--~~~ti~~G~i~~~ 403 (405)
T 2c78_A 367 NVTFTVELIKPVALEEG------LRFAIRE--GGRTVGAGVVTKI 403 (405)
T ss_dssp EEEEEEEEEEEEEECTT------CEEEEEE--TTEEEEEEEEEEE
T ss_pred EEEEEEEECceEEEccC------CEEEEEc--CCeEEEEEEEEec
Confidence 99999999999999984 6999988 6799999988764
No 11
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1.8e-51 Score=475.83 Aligned_cols=367 Identities=22% Similarity=0.266 Sum_probs=306.2
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
...+.++|+++||+|||||||+++|++.. ....+|.+.+|+++|+|++..+..+
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~--------------------------~~~~~d~~~~e~~~GiTi~~~~~~~ 68 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIA--------------------------STSAHDKLPESQKRGITIDIGFSAF 68 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC----------------------------------------------CCCEE
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCC--------------------------cccccccccccccCccEEecceEEE
Confidence 34467899999999999999999998621 1224678889999999999999999
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
.++++.++|+|||||++|.+++..+++.+|++|||||+++ |.++|+++|+.++..++++. |+|+||+|+.+
T Consensus 69 ~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~-------g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~- 139 (482)
T 1wb1_A 69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE-------GPKTQTGEHMLILDHFNIPI-IVVITKSDNAG- 139 (482)
T ss_dssp EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT-------CSCHHHHHHHHHHHHTTCCB-CEEEECTTSSC-
T ss_pred EECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCC-------CccHHHHHHHHHHHHcCCCE-EEEEECCCccc-
Confidence 9999999999999999999999999999999999999999 88999999999999999995 89999999984
Q ss_pred CHHHHHHHHHHHHHHHHHc-CCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhc-ccCC--CcCCCCCceeeEEE
Q psy3751 480 NQIFYKRIVYAYKKFAEDI-HFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLES-LNTN--EKIDKKPLRFPVQL 555 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~-~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~-~~~~--~~~~~~~~~~~i~~ 555 (967)
++.++.+.++++++++.. ++.+.+++++||++|.|+++ |++.|.. ++.+ .+..++|+++|+++
T Consensus 140 -~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~------------L~~~L~~~i~~~~~~~~~~~~~~~~v~~ 206 (482)
T 1wb1_A 140 -TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE------------LKNLIITTLNNAEIIRNTESYFKMPLDH 206 (482)
T ss_dssp -HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHH------------HHHHHHHHHHHSCCCCCSSSCCBCBCSC
T ss_pred -chhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHH------------HHHHHHHhhcCcccccccccccccccee
Confidence 556777888888888887 77778999999999999998 4555544 3333 55567899999999
Q ss_pred eecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccc-c
Q psy3751 556 VARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNML-V 632 (967)
Q Consensus 556 v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl-~ 632 (967)
+|...+.| ++++|+|.+|++++||.|.+.|.+...+|++|++++.++++|.|||+|++.+.+ ..++++||+| +
T Consensus 207 v~~~~g~G----~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~ 282 (482)
T 1wb1_A 207 AFPIKGAG----TVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTS 282 (482)
T ss_dssp EECCSSCC----CEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCC
T ss_pred EEEecCCc----eEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEec
Confidence 99988877 899999999999999999999999999999999999999999999999999976 5679999999 5
Q ss_pred cCCCCccccceeEEEEEEecc--ccccCCceEEEEEeeeEEEEEEeeee-eeeecCCCccCCCccccCCCEEEEEEeecC
Q psy3751 633 SPFKRPVSLRSINANLCWLSE--ESLDLRRKYLLKHSTNQILSRILKIN-ALLNINTQKWCPPKLLDLNDIGCVTINIYE 709 (967)
Q Consensus 633 ~~~~~~~~~~~f~a~i~~~~~--~~i~~g~~~~~~~~~~~~~~~i~~i~-~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~ 709 (967)
.+ +++.++..|+|++.|+++ .++.+|+++++|+|+.+++|+|..+. +++|.++... .++.|++||.+.|+|++.+
T Consensus 283 ~~-~~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~-~~~~l~~g~~~~v~l~~~~ 360 (482)
T 1wb1_A 283 KD-TKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENI-ILNEVISGNEXYXAFELEE 360 (482)
T ss_dssp TT-CCCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEE-ECCSSCCSSCCCEEEEEEE
T ss_pred CC-CCCceeeEEEEEEEEeccCCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccc-cchhhcCCCEEEEEEEcCc
Confidence 54 677889999999999985 68999999999999999999999998 8888877543 2578999999999999999
Q ss_pred ceeeccccCccCCccceeec----ccccccceEEEEEecCC
Q psy3751 710 PISVDSYDNIRSTGSFILID----EITFQTVAAVYIIGAGP 746 (967)
Q Consensus 710 pi~~~~~~~~~~~grfil~d----~~~~~~~~~~~~vg~g~ 746 (967)
|+++++ ++||+||| ..+++|+|.|.++..-+
T Consensus 361 pv~~~~------~~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 361 KVLAEV------GDRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp EECCCS------SCCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred cEEecC------CCeEEEEECCCCccCceEeeEEEEEeccc
Confidence 999997 57999999 33378999999887644
No 12
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=4.3e-49 Score=475.21 Aligned_cols=373 Identities=23% Similarity=0.328 Sum_probs=303.7
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+++|++.. ...|. ..+...+.+|.+++|+++|+|++.....+
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~---------------~~~G~--a~f~~~a~lD~~~~ErerGITIdva~v~f 354 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVL---------------AKTYG--GAARAFDQIDNAPEEKARGITINTSHVEY 354 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHH---------------HHHSC--C---------------------CCSCEEE
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhh---------------ccccc--cccccccccccccccccCceeEEEEEEEE
Confidence 34577999999999999999999998621 11111 11111125788999999999999998889
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
+.++..++|||||||++|..++..+++.+|++|||||+++ +.+.|+++|+.++..+++|++|||+||||+.+
T Consensus 355 ~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtd-------Gv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~- 426 (1289)
T 3avx_A 355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-------GPMPQTREHILLGRQVGVPYIIVFLNKCDMVD- 426 (1289)
T ss_dssp ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTT-------CSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCc-------cCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-
Confidence 8888999999999999999999999999999999999999 88899999999999999998899999999986
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--cceEEeccccCCCcccccccCCCCCCC-CcHHHHhhc-ccCCCcCCCCCceeeEEE
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQ--NINTIPISALNGDNIISASNNMLWYNG-PTLISLLES-LNTNEKIDKKPLRFPVQL 555 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~--~~~ii~iSa~~g~gi~~l~~~~~w~~~-~~L~~~l~~-~~~~~~~~~~~~~~~i~~ 555 (967)
+++.++.+.++++.+++.+++. +++++++||++|.+- ..+||.| ..|++.+.. ++.|.+..++|++++|++
T Consensus 427 d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng-----~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~ 501 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG-----DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIED 501 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC-----CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCE
T ss_pred chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC-----CccccccchhhHhHHhhhcCCCccccccceeeeccc
Confidence 4566777888899999988863 579999999999541 1246644 346666655 676777778999999999
Q ss_pred eecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCccc
Q psy3751 556 VARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG--KKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNML 631 (967)
Q Consensus 556 v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~--~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl 631 (967)
+++..+.| ++++|+|.+|+|++||.|.+.|.+ ++++|++|++++.++++|.|||+|++.+++ ..++++||+|
T Consensus 502 Vf~i~G~G----tVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL 577 (1289)
T 3avx_A 502 VFSISGRG----TVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL 577 (1289)
T ss_dssp EEEETTTE----EEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEE
T ss_pred cccccCCc----EEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEE
Confidence 99998887 999999999999999999999988 789999999999999999999999999984 5789999999
Q ss_pred ccCCCCccccceeEEEEEEecc------ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEE
Q psy3751 632 VSPFKRPVSLRSINANLCWLSE------ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTI 705 (967)
Q Consensus 632 ~~~~~~~~~~~~f~a~i~~~~~------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l 705 (967)
++++ ++.++..|+|++.||++ .++.+|+.+++|+++.+++|+|. +. ..++.+++||.+.|+|
T Consensus 578 ~~~~-~~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~----------~~~~~L~~Gd~a~V~L 645 (1289)
T 3avx_A 578 AKPG-TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP----------EGVEMVMPGDNIKMVV 645 (1289)
T ss_dssp ESTT-SCCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC----------TTCCCBCTTCCCEEEE
T ss_pred ecCC-CCccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC----------CCcccccCCCEEEEEE
Confidence 9975 46789999999999985 38999999999999999999987 32 1257899999999999
Q ss_pred eecCceeeccccCccCCccceeecccccccceEEEEEecCC
Q psy3751 706 NIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 706 ~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
++.+|+++++ ++||+||+ +++|+|.|.|+.+-+
T Consensus 646 ~l~~Pi~ve~------g~RFiLRd--~grTIG~G~V~~v~~ 678 (1289)
T 3avx_A 646 TLIHPIAMDD------GLRFAIRE--GGRTVGAGVVAKVLS 678 (1289)
T ss_dssp EEEEEEECCT------TCEEEEEE--TTEEEEEEEEEEECC
T ss_pred EECceEEEcc------CCEEEEEe--CCeEEEEEEEeeech
Confidence 9999999998 46999988 579999999988654
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=5e-49 Score=439.24 Aligned_cols=336 Identities=17% Similarity=0.189 Sum_probs=285.7
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
+|+++||+|+|||||+++|+ ++|+|++..+..+++++++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----------------------------------------~~giTi~~~~~~~~~~~~~ 61 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----------------------------------------KKGTSSDITMYNNDKEGRN 61 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----------------------------------------EEEEESSSEEEEECSSSSE
T ss_pred EEEEECCCCCCHHHHHHHHH-----------------------------------------hCCEEEEeeEEEEecCCeE
Confidence 89999999999999999986 2689999999999999999
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEe-cCCccCcCHHHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN-KMDLINYNQIFY 484 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviN-K~D~~~~~~~~~ 484 (967)
++|||||||++|.++++.+++.+|++||||| ++ ++++|+++|+.++..++++.+|+|+| |||+ + ....
T Consensus 62 i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-------g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~--~~~~ 130 (370)
T 2elf_A 62 MVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-------GLDAHTGECIIALDLLGFKHGIIALTRSDST-H--MHAI 130 (370)
T ss_dssp EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-------CCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C--HHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-------CCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C--HHHH
Confidence 9999999999999999999999999999999 87 88999999999999999997688999 9999 4 3445
Q ss_pred HHHHHHHHHHHHHcCCccceEEe--ccccC---CCcccccccCCCCCCCCcHHHHhhcccCCCcC-CCCCceeeEEEeec
Q psy3751 485 KRIVYAYKKFAEDIHFQNINTIP--ISALN---GDNIISASNNMLWYNGPTLISLLESLNTNEKI-DKKPLRFPVQLVAR 558 (967)
Q Consensus 485 ~~i~~~~~~~~~~~~~~~~~ii~--iSa~~---g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~-~~~~~~~~i~~v~~ 558 (967)
+++.++++++++..++..+++++ +||++ |.|++++.+ .|.+.+.....+... ...|++++++++|+
T Consensus 131 ~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~--------~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~ 202 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKA--------RINEVAEKIEAENAELNSLPARIFIDHAFN 202 (370)
T ss_dssp HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHH--------HHHHHHHHHHHHHHHGGGSCCEEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHH--------HHHhhccccccCCcccccccccccceeEEE
Confidence 66777888888887776789999 99999 999988532 122332222111111 23567788999999
Q ss_pred CCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEcc--ccCCCCCcccccCCC
Q psy3751 559 HCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKE--YLDISRGNMLVSPFK 636 (967)
Q Consensus 559 ~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~--~~~i~~G~vl~~~~~ 636 (967)
..+.| ++++|+|.+|++++||+|.+.|.+...+|++|++++.++++|.|||+|++++++ ..++++||+|++ +
T Consensus 203 ~~~~G----~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~--~ 276 (370)
T 2elf_A 203 VTGKG----CVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD--K 276 (370)
T ss_dssp CC-------CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES--C
T ss_pred cCCCc----eEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC--C
Confidence 98877 899999999999999999999999999999999999999999999999999984 568999999998 4
Q ss_pred CccccceeEEEEEEecc-ccccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeecc
Q psy3751 637 RPVSLRSINANLCWLSE-ESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDS 715 (967)
Q Consensus 637 ~~~~~~~f~a~i~~~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~ 715 (967)
+ ..++.|+|++.|+++ .++.+|+++++|+|+.+++|+|..+.. |.+ + .+.+++||.+.|+|++.+|+++++
T Consensus 277 ~-~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~----~~~~~~g~~~~v~l~~~~pi~~~~ 348 (370)
T 2elf_A 277 E-IVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-E----VEEAKPGSTCVLELSGNKKLAYSK 348 (370)
T ss_dssp C-EEEEEEEEEEEECTTSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-E----ESCBCTTCEEEEEEEEEEEEEECT
T ss_pred C-ceeEEEEEEEEEECCCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-c----ceeecCCCEEEEEEEECcEEEEeC
Confidence 5 899999999999997 899999999999999999999998853 322 1 124568999999999999999999
Q ss_pred ccCccCCccceeecccc-cccceEEEE
Q psy3751 716 YDNIRSTGSFILIDEIT-FQTVAAVYI 741 (967)
Q Consensus 716 ~~~~~~~grfil~d~~~-~~~~~~~~~ 741 (967)
+. ||+|||..+ ++|+|.+.+
T Consensus 349 ~~------rfilr~~~~~~~tig~G~~ 369 (370)
T 2elf_A 349 QD------RFLLANLDLTQRFAAYGFS 369 (370)
T ss_dssp TS------CEEEECTTSSSCEEEEEEE
T ss_pred CC------EEEEEECCCCCEEEEEEEe
Confidence 64 999999765 778887754
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=2.8e-47 Score=435.00 Aligned_cols=346 Identities=25% Similarity=0.307 Sum_probs=287.6
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.+||+++||+|||||||+++|++. ..+.+.+|+++|+|++.++..+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~------------------------------~~~~~~~e~~~giTi~~~~~~~ 55 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGV------------------------------WTDTHSEELRRGITIKIGFADA 55 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTC------------------------------CCC--CGGGGSCSSSCCEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCC------------------------------ccccChhhhcCCcEEEEeeeee
Confidence 3467799999999999999999999851 1466778999999998876654
Q ss_pred ecC-----------------------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCc-hhhHHHH
Q psy3751 400 NTP-----------------------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL-LTQTKRH 455 (967)
Q Consensus 400 ~~~-----------------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~-~~~t~~~ 455 (967)
.+. ...++|||||||++|.+++++++..+|++|||||+++ +. ++|+++|
T Consensus 56 ~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~-------g~~~~qt~e~ 128 (410)
T 1kk1_A 56 EIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE-------PCPRPQTREH 128 (410)
T ss_dssp EEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTS-------CSSCHHHHHH
T ss_pred ecccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCC-------CCCChhHHHH
Confidence 331 1679999999999999999999999999999999998 76 8999999
Q ss_pred HHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHh
Q psy3751 456 SIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLL 535 (967)
Q Consensus 456 ~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l 535 (967)
+.++..++++++|+|+||||+.+.+ ...+..++++++++.....+.+++++||++|.|+++ |++.|
T Consensus 129 l~~~~~~~~~~iivviNK~Dl~~~~--~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~------------L~~~l 194 (410)
T 1kk1_A 129 LMALQIIGQKNIIIAQNKIELVDKE--KALENYRQIKEFIEGTVAENAPIIPISALHGANIDV------------LVKAI 194 (410)
T ss_dssp HHHHHHHTCCCEEEEEECGGGSCHH--HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHH------------HHHHH
T ss_pred HHHHHHcCCCcEEEEEECccCCCHH--HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHH------------HHHHH
Confidence 9999999998899999999998643 233445566667766544567999999999999987 66666
Q ss_pred hc-ccCCCcCCCCCceeeEEEeecCCCccC--C--CceEEEEEEEeeeecCCCEEEEecCCc------------EEEEEE
Q psy3751 536 ES-LNTNEKIDKKPLRFPVQLVARHCGHIS--K--DFRGYMGRIESGIIKKNDCLIVEPSGK------------KATIKD 598 (967)
Q Consensus 536 ~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~--~--~~~v~~G~v~~G~l~~g~~v~i~p~~~------------~~~V~~ 598 (967)
.. ++.|.+..+.|++++|+++|...+.+. + .+++++|+|.+|+|++||.|.+.|+++ .++|++
T Consensus 195 ~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~ 274 (410)
T 1kk1_A 195 EDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVS 274 (410)
T ss_dssp HHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEE
Confidence 65 777777778999999999998764321 1 226899999999999999999998652 589999
Q ss_pred EEeCccccceeecCCeEEEEEcc-----ccCCCCCcccccCCCCccccceeEEEEEEecc----------ccccCCceEE
Q psy3751 599 IQMLNKSLDMAITGQSVTLIIKE-----YLDISRGNMLVSPFKRPVSLRSINANLCWLSE----------ESLDLRRKYL 663 (967)
Q Consensus 599 i~~~~~~v~~a~~G~~v~l~l~~-----~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~----------~~i~~g~~~~ 663 (967)
|++++.++++|.|||+|++.++. ..++.+||+|++++.++..+..|+|++.||++ .+|.+|++++
T Consensus 275 i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~ 354 (410)
T 1kk1_A 275 LQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLL 354 (410)
T ss_dssp EEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEE
T ss_pred EEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEE
Confidence 99999999999999999999862 36799999999998888889999999999986 6899999999
Q ss_pred EEEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCccCCccceeecccc--cccceEEEE
Q psy3751 664 LKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILIDEIT--FQTVAAVYI 741 (967)
Q Consensus 664 ~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~~grfil~d~~~--~~~~~~~~~ 741 (967)
+|+|+.+++|+|..+.. + .++|+|.+|+|++++ .||+||++.+ ++++|.|.|
T Consensus 355 ~~~~t~~~~~~v~~~~~------------------~--~~~l~~~~p~~~~~~------~~~~~~~~~~~~~r~ig~G~i 408 (410)
T 1kk1_A 355 LNVGTARTMGLVTGLGK------------------D--EIEVKLQIPVCAEPG------DRVAISRQIGSRWRLIGYGII 408 (410)
T ss_dssp EEETTEEEEEEEEEEET------------------T--EEEEEEEEEEECCTT------CEEEEEEEETTEEEEEEEEEE
T ss_pred EEEcCCEEeEEEEEecC------------------C--EEEEEeCCcEEecCC------CEEEEEEecCCCcEEEEEEEE
Confidence 99999999999998732 2 688899999999994 5899998543 667777766
Q ss_pred E
Q psy3751 742 I 742 (967)
Q Consensus 742 v 742 (967)
.
T Consensus 409 ~ 409 (410)
T 1kk1_A 409 K 409 (410)
T ss_dssp E
T ss_pred c
Confidence 5
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2e-47 Score=435.59 Aligned_cols=345 Identities=25% Similarity=0.277 Sum_probs=274.9
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.++.+||+++||+|||||||+++|++. ..+.+.+|+++|+|++.++..+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~------------------------------~~~~~~~e~~~giTi~~~~~~~~ 54 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGV------------------------------WTDRHSEELRRGISIRLGYADCE 54 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSC------------------------------CCCC-------CCCCCCEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCC------------------------------ccccCcccccCCcEEEecccccc
Confidence 457799999999999999999999851 14567788999999988765433
Q ss_pred c---------------C--------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCc-hhhHHHHH
Q psy3751 401 T---------------P--------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL-LTQTKRHS 456 (967)
Q Consensus 401 ~---------------~--------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~-~~~t~~~~ 456 (967)
. + .+.++|||||||++|.+++++++..+|++|||||+++ +. ++|+++|+
T Consensus 55 ~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~-------g~~~~qt~e~l 127 (408)
T 1s0u_A 55 IRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE-------PCPQPQTKEHL 127 (408)
T ss_dssp EEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTS-------CSSCHHHHHHH
T ss_pred cccccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCC-------CCCCchhHHHH
Confidence 2 1 1679999999999999999999999999999999998 76 89999999
Q ss_pred HHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhh
Q psy3751 457 IIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLE 536 (967)
Q Consensus 457 ~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~ 536 (967)
..+..++++++|+|+||+|+.+.++ ..+..++++++++.....+.+++++||++|.|+++ |++.|.
T Consensus 128 ~~~~~l~~~~iivv~NK~Dl~~~~~--~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~------------L~~~l~ 193 (408)
T 1s0u_A 128 MALEILGIDKIIIVQNKIDLVDEKQ--AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDV------------LLKAIQ 193 (408)
T ss_dssp HHHHHTTCCCEEEEEECTTSSCTTT--TTTHHHHHHHHHTTSTTTTCCEEEC------CHHH------------HHHHHH
T ss_pred HHHHHcCCCeEEEEEEccCCCCHHH--HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHH------------HHHHHH
Confidence 9999999988999999999986532 12233445566666555567999999999999987 666666
Q ss_pred c-ccCCCcCCCCCceeeEEEeecCCCccC--C--CceEEEEEEEeeeecCCCEEEEecCCc------------EEEEEEE
Q psy3751 537 S-LNTNEKIDKKPLRFPVQLVARHCGHIS--K--DFRGYMGRIESGIIKKNDCLIVEPSGK------------KATIKDI 599 (967)
Q Consensus 537 ~-~~~~~~~~~~~~~~~i~~v~~~~~~~~--~--~~~v~~G~v~~G~l~~g~~v~i~p~~~------------~~~V~~i 599 (967)
. ++.+.+..++|++++|+++|++.+.|. + .+++++|+|.+|+|++||.|.+.|++. .++|++|
T Consensus 194 ~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i 273 (408)
T 1s0u_A 194 DFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSL 273 (408)
T ss_dssp HHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEE
T ss_pred HhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEE
Confidence 4 777777778999999999998765331 1 236899999999999999999998642 6899999
Q ss_pred EeCccccceeecCCeEEEEEc---c--ccCCCCCcccccCCCCccccceeEEEEEEecc----------ccccCCceEEE
Q psy3751 600 QMLNKSLDMAITGQSVTLIIK---E--YLDISRGNMLVSPFKRPVSLRSINANLCWLSE----------ESLDLRRKYLL 664 (967)
Q Consensus 600 ~~~~~~v~~a~~G~~v~l~l~---~--~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~----------~~i~~g~~~~~ 664 (967)
++++.++++|.|||+|+++++ + ..++++||+|++++.++..+..|+|++.||++ .+|++|+++++
T Consensus 274 ~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~ 353 (408)
T 1s0u_A 274 AAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLML 353 (408)
T ss_dssp EETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEE
T ss_pred EECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEE
Confidence 999999999999999999986 2 35799999999998888888999999999986 68999999999
Q ss_pred EEeeeEEEEEEeeeeeeeecCCCccCCCccccCCCEEEEEEeecCceeeccccCccCCccceeeccc--ccccceEEEEE
Q psy3751 665 KHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILIDEI--TFQTVAAVYII 742 (967)
Q Consensus 665 ~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~~grfil~d~~--~~~~~~~~~~v 742 (967)
|+|+.++.|+|..+.. | .++|+|.+|+|++++ .||+||++. .++++|.|.+.
T Consensus 354 ~~~t~~~~~~v~~~~~------------------~--~~~~~~~~p~~~~~~------~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 354 NIGTATTAGVITSARG------------------D--IADIKLKLPICAEIG------DRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp EETTEEEEEEEEEEET------------------T--EEEEEEEEEEECCTT------CEEEEEEECSSSEEEEEEEEEC
T ss_pred EEcCCEEEEEEEEecC------------------C--EEEEEECCcEEecCC------CEEEEEEecCCCeEEEEEEEEc
Confidence 9999999999998732 2 688889999999994 589999853 36677766654
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=6.7e-45 Score=414.08 Aligned_cols=357 Identities=19% Similarity=0.213 Sum_probs=281.0
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.++|+++|++|||||||+++|++....- . ..+...........+..++++.+.....+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSK-------------K-----LGYAETNIGVCESCKKPEAYVTEPSCKSC 65 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCS-------------S-----SEEEEEEEEECTTSCTTTTEESSSCCGGG
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccc-------------c-----cCccccceeeccccccccceecccccccc
Confidence 44577999999999999999999998732110 0 01111111111222334455444332222
Q ss_pred ec-----CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCc-hhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 400 NT-----PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL-LTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 400 ~~-----~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~-~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
.. ..+.++|+|||||++|.+++..+++.+|++|+|||+++ +. .+|+++|+.++..++++++|+|+||
T Consensus 66 ~~~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-------~~~~~qt~~~~~~~~~~~~~~iivviNK 138 (403)
T 3sjy_A 66 GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE-------PFPQPQTREHFVALGIIGVKNLIIVQNK 138 (403)
T ss_dssp TCCSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTS-------CSSCHHHHHHHHHHHHHTCCCEEEEEEC
T ss_pred cccccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC-------CCCcHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 22 23789999999999999999999999999999999998 65 8999999999999999889999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhc-ccCCCcCCCCCceee
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLES-LNTNEKIDKKPLRFP 552 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~-~~~~~~~~~~~~~~~ 552 (967)
+|+++. ....+..+++.++++..+..+++++++||++|.|+++ |++.|.. ++.+....++|++++
T Consensus 139 ~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~------------L~~~l~~~l~~~~~~~~~~~~~~ 204 (403)
T 3sjy_A 139 VDVVSK--EEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDS------------LIEGIEEYIKTPYRDLSQKPVML 204 (403)
T ss_dssp GGGSCH--HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHH------------HHHHHHHHSCCCCCCTTSCCEEE
T ss_pred ccccch--HHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHH------------HHHHHHHhCCCCCCCCCCCcEEE
Confidence 999864 3344566677777777777778999999999999997 6666665 777777778999999
Q ss_pred EEEeecCCCcc--CC--CceEEEEEEEeeeecCCCEEEEecCCc------------EEEEEEEEeCccccceeecCCeEE
Q psy3751 553 VQLVARHCGHI--SK--DFRGYMGRIESGIIKKNDCLIVEPSGK------------KATIKDIQMLNKSLDMAITGQSVT 616 (967)
Q Consensus 553 i~~v~~~~~~~--~~--~~~v~~G~v~~G~l~~g~~v~i~p~~~------------~~~V~~i~~~~~~v~~a~~G~~v~ 616 (967)
|+++|...+.+ .+ .+++++|+|.+|++++||+|.+.|+++ ..+|++|++++.++++|.|||+|+
T Consensus 205 v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~ 284 (403)
T 3sjy_A 205 VIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVA 284 (403)
T ss_dssp EEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEE
T ss_pred EEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEE
Confidence 99999876522 11 237899999999999999999999874 579999999999999999999999
Q ss_pred EEEc---c--ccCCCCCcccccCCCCccccceeEEEEEEec----------cccccCCceEEEEEeeeEEEEEEeeeeee
Q psy3751 617 LIIK---E--YLDISRGNMLVSPFKRPVSLRSINANLCWLS----------EESLDLRRKYLLKHSTNQILSRILKINAL 681 (967)
Q Consensus 617 l~l~---~--~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~----------~~~i~~g~~~~~~~~~~~~~~~i~~i~~~ 681 (967)
+++. + ..++.+||+|++++.++..+..|+|++.||+ ..++.+|+++++|+||.++.|+|..+..
T Consensus 285 ~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~- 363 (403)
T 3sjy_A 285 IGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKK- 363 (403)
T ss_dssp EEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECS-
T ss_pred EEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecC-
Confidence 9986 2 4589999999999888888999999999998 4689999999999999999999998732
Q ss_pred eecCCCccCCCccccCCCEEEEEEeecCceeeccccCccCCc-cceeecc--cccccceEEEE
Q psy3751 682 LNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTG-SFILIDE--ITFQTVAAVYI 741 (967)
Q Consensus 682 ~d~~~~~~~~~~~l~~g~~a~v~l~l~~pi~~~~~~~~~~~g-rfil~d~--~~~~~~~~~~~ 741 (967)
+ .+++.|.+|+++.. +. ||+|..+ ..++.+|.+.+
T Consensus 364 -----------------~--~~~~~l~~p~~~~~------g~~r~~i~r~~~~~~r~~g~g~i 401 (403)
T 3sjy_A 364 -----------------D--EIEVELRRPVAVWS------NNIRTVISRQIAGRWRMIGWGLV 401 (403)
T ss_dssp -----------------S--EEEEEEEEEEECCS------SSCEEEEEEEETTEEEEEEEEEE
T ss_pred -----------------c--eEEEEeCCcEeecc------CCEEEEEEEEeCCcEEEEEEEEE
Confidence 1 58889999999988 56 8998432 22344555443
No 17
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=100.00 E-value=1.4e-46 Score=408.75 Aligned_cols=301 Identities=45% Similarity=0.725 Sum_probs=182.5
Q ss_pred hhhccccChhHHHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHH
Q psy3751 8 IFYKNNLNNLYLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRD 87 (967)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~ 87 (967)
-+..+.+++.+|+.++++++++|+++++.+++++|+|||||||+|||||+.+++.+.++++.++|+|||++||++++|++
T Consensus 17 ~~~~m~~~~~~L~~le~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~et~~~v~ 96 (325)
T 1zun_A 17 RGSHMVDKLTHLKQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRD 96 (325)
T ss_dssp CCGGGSCCCCHHHHHHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHH
T ss_pred cHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHHHHHHHH
Confidence 34456677889999999999999999999999999999999999999999999776567899999999999999999999
Q ss_pred HHHHHhCCcEEEEecchhhhhcccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCC
Q psy3751 88 NCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQ 167 (967)
Q Consensus 88 ~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~ 167 (967)
+++++||++++++.++.....+...+....+.+|..+|..++.++++++|+++|++|+|+||+..|+.+++++.+.....
T Consensus 97 ~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~~Ra~~~~~~~r~~~~~ 176 (325)
T 1zun_A 97 QMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHR 176 (325)
T ss_dssp HHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSGGGGGCCSEEEECTTCC
T ss_pred HHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhhhhhcccceeccccccc
Confidence 99999999999998876543322222222334555577788999999899999999999999999999999887777778
Q ss_pred CCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccC-CC----CC
Q psy3751 168 WNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTN-LT----PA 242 (967)
Q Consensus 168 ~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~-~~----~~ 242 (967)
|+++.++|++|..+|+....++.++++||++||++|||+|++.++||||+||+...++..+++++++++++ .. ++
T Consensus 177 ~d~~~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~LY~~~~r~~~~r~g~~~~~~~~~g~~~~~~ 256 (325)
T 1zun_A 177 WDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAAERDVIEKNGTLIMIDDERILEHLTD 256 (325)
T ss_dssp BCGGGCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCSCCSCC-------------------------
T ss_pred cCccccCcchhhhccccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcchhhhcccccccccCCceeccchhhcccccCC
Confidence 88888999999999888777778899999999999999999999999999999999988777777777774 55 99
Q ss_pred CCCccceeeeEEEeccccccccccccCCcCChHHHHHhhhhhhhhhhcccccccccchhhHHhhhcc
Q psy3751 243 HPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKT 309 (967)
Q Consensus 243 ~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 309 (967)
.|+|..+++.+||.|+|||+||.++.++++++++++++......+|+.. |..++.+..+++.+++.
T Consensus 257 ~~~~~~~~~~~ry~siGc~~cT~~v~~~~~~~~~~~~~~~~~~~~er~~-R~~d~~~~~~~~~~~~~ 322 (325)
T 1zun_A 257 EEKSRIVKKKVRFRTLGCYPLTGAVESEATSLTDIIQEMLLTRTSERQG-RVIDHDGAGSMEEKKRQ 322 (325)
T ss_dssp -------------------------------------------------------------------
T ss_pred CccccccccccccCCcCCcccCCccCCCCccHHHHHHHHHhcCCCcccc-ccccccchhHHHHHHhc
Confidence 9999999999999999999999999999999999999998888899985 88888888888877664
No 18
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=100.00 E-value=1e-36 Score=328.44 Aligned_cols=229 Identities=36% Similarity=0.581 Sum_probs=198.9
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCC-CceEEEecccccccchhHHHHHHHHHHHHhcCC
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCP-KAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYN 814 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 814 (967)
.|.+|+||+|||+|++||+||+++|++||+|+|++++.+.++.+++ ....++.++....+...++++.+.+++.+++|+
T Consensus 24 ~g~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~d~~~~~~il~~~~~~~~~i~~~k~~~~~~~~~~~i~~~l~~~~~~G~ 103 (294)
T 2ybo_A 24 AGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQR 103 (294)
T ss_dssp TTCEEEEEEESSCGGGSCHHHHHHHTTCSEEEECTTSCHHHHHHSCTTSEEEECC--------CHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEEcCCCCHHHHHhcccCCeEEecccccccccCCHHHHHHHHHHHHHCCC
Confidence 4789999999999999999999999999999999999998888764 445556565555556667888888899999999
Q ss_pred eEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc----ccccccC
Q psy3751 815 LVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK----NNYLKNI 890 (967)
Q Consensus 815 ~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~ 890 (967)
+||+|++|||+||+++.++++++.+.|++++++|||||+++|+|++|+||++++.+.++.++++|..+. ..+..+.
T Consensus 104 ~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~sg~~~~~~~~~~~~~~l~ 183 (294)
T 2ybo_A 104 RVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWAGLA 183 (294)
T ss_dssp CEEEEEEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEEECSCCTTSSCCCCHHHHT
T ss_pred eEEEEcCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEEcccCCcccchhhHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999888888888886533 1466667
Q ss_pred CCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCCCC
Q psy3751 891 PISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLK 964 (967)
Q Consensus 891 ~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~~~ 964 (967)
....|+||||+.+++.++++.|.+.|+++++++++++++|+++|++++++|+++.+.. ..++++++++||+++.
T Consensus 184 ~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vivIg~~~~ 259 (294)
T 2ybo_A 184 RGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVA 259 (294)
T ss_dssp SSSCEEEEESCGGGHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHHHHTTCCSSEEEEESTHHH
T ss_pred cCCCeEEEECcHHHHHHHHHHHHhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHHHHHHhcCCCCCEEEEECchhh
Confidence 7789999999999999999999999999999999999999999999999999998643 3578999999998764
No 19
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=100.00 E-value=7.6e-37 Score=327.79 Aligned_cols=230 Identities=31% Similarity=0.454 Sum_probs=201.7
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCC-CceEEEecccccccchhHHHHHHHHHHHHhcC
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCP-KAKHIFVGKRFKKHSIAQYIINRIIVKCAFKY 813 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 813 (967)
.+|.+|+||+|||+|++||+||+++|++||+|+||+++.+.++.+++ ....+++++....+...++++.+.+++.+++|
T Consensus 13 ~~g~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~d~~~~~~ll~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~G 92 (280)
T 1s4d_A 13 EKGSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELARAG 92 (280)
T ss_dssp CSSCEEEEECBSSCTTSSBHHHHHHHHHCSEEEECSCSCTTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHhccCCCEEEeccccccccccCHHHHHHHHHHHHhCC
Confidence 35789999999999999999999999999999999999888888764 44556666665566677888888899999999
Q ss_pred CeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc-----ccccc
Q psy3751 814 NLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK-----NNYLK 888 (967)
Q Consensus 814 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~-----~~~~~ 888 (967)
++||+|++|||++|+++.++++++.+.|++++++|||||+++|+|++|+||++++.+.++.+++.|.... ..|..
T Consensus 93 ~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (280)
T 1s4d_A 93 NRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDRINWQG 172 (280)
T ss_dssp CCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEEECCC-------CCCHHH
T ss_pred CeEEEEcCCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEECCcCCcccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999999998888888888886532 23555
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCCCC
Q psy3751 889 NIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLK 964 (967)
Q Consensus 889 ~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~~~ 964 (967)
+.....|+||||+.+++.++++.|.+.|+++++++++++++|+++|++++++|+++.+.. ..+++|++++||+++.
T Consensus 173 l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vivig~~~~ 250 (280)
T 1s4d_A 173 IASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVR 250 (280)
T ss_dssp HHTTCSEEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEETTTHHHHHHHHTCCSSEEEEESGGGG
T ss_pred HhCCCCeEEEECchhhHHHHHHHHHhcCCCCCCEEEEEEeCCCCCeEEEEecHHHHHHHHHhcCCCCCEEEEECchhc
Confidence 556789999999999999999999999999999999999999999999999999998643 3578999999998875
No 20
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=100.00 E-value=9.6e-37 Score=322.27 Aligned_cols=227 Identities=29% Similarity=0.440 Sum_probs=193.9
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEE-ecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcC
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKY 813 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 813 (967)
.+|.+|+||+|||+|++||+||+++|++||+|++ ++++.+.++.+++....+.. ...+.++++.+.+.+.+++|
T Consensus 3 ~~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~g 77 (253)
T 4e16_A 3 AMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHN-----SAHMDLQEIIDVMREGIENN 77 (253)
T ss_dssp -CCCEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCGGGGGGSCTTCEEEE-----GGGCCHHHHHHHHHHHHHTT
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhcCCCCEEEe-----cCCCCHHHHHHHHHHHHHCC
Confidence 3688999999999999999999999999999999 67777778777654433321 12345677778888899999
Q ss_pred CeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc----cccccc
Q psy3751 814 NLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK----NNYLKN 889 (967)
Q Consensus 814 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~----~~~~~~ 889 (967)
++||+|++|||+||+++.++++++.+.|++++++|||||+++|+|++|+||++++.+.++.+.+.|++.. ..+..+
T Consensus 78 ~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~~~~g~~~~~~~~~~~~l 157 (253)
T 4e16_A 78 KSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSY 157 (253)
T ss_dssp CCEEEEESBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEEEC---CCCCGGGSHHHH
T ss_pred CcEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEEeccCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988878887776665431 345566
Q ss_pred CCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCCCCcC
Q psy3751 890 IPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLKSH 966 (967)
Q Consensus 890 ~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~~~~~ 966 (967)
.....|+|||++.+++.++++.|.+.|+++++++++++++|+++|+++++|++++.+.. ...++|++++||+++..+
T Consensus 158 ~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vivIg~~~~~~ 236 (253)
T 4e16_A 158 AKHQTSMVIFLSVQEIEKVVSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMVGRFLGEE 236 (253)
T ss_dssp HTTCSEEEEEECSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEETTTHHHHHHHTCCCSCEEEEESGGGGC-
T ss_pred hcCCCeEEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhCCCCCCEEEEECcccccc
Confidence 66788999999999999999999999999999999999999999999999999998753 357899999999998654
No 21
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=100.00 E-value=4.6e-36 Score=314.74 Aligned_cols=221 Identities=32% Similarity=0.430 Sum_probs=185.2
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCeE
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLV 816 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V 816 (967)
|.+|+||+|||+|++||+||+++|++||+|++++++.+.++++. ....+..++....+...++++.+.+.+.+++|++|
T Consensus 3 g~l~vVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V 81 (235)
T 1ve2_A 3 GKVYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALA-KGELVPVGKEGYGGKTPQEAITARLIALAREGRVV 81 (235)
T ss_dssp CEEEEEECBSSSGGGSBHHHHHHHHHCSEEEECTTSCHHHHTTC-CSEEEEC-------CCCHHHHHHHHHHHHHTTCEE
T ss_pred cEEEEEeeCCCCHHHHHHHHHHHHHhCCEEEEeCCCCHHHHHhh-CcEEEEecccCcccccCHHHHHHHHHHHHHcCCeE
Confidence 68999999999999999999999999999999999999888876 45555555444444556777778888999999999
Q ss_pred EEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccccccccCCCCCcE
Q psy3751 817 VRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTL 896 (967)
Q Consensus 817 v~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 896 (967)
|+|++|||+||+++.++++++.+.|++++++|||||+++|+|++|+||++++.+.++.+.++|. +.+ .+. ..+|+
T Consensus 82 ~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~s~~~-~~~---~l~-~~~t~ 156 (235)
T 1ve2_A 82 ARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVATGHD-PAL---PLP-RADTL 156 (235)
T ss_dssp EEEESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEEESSC-TTS---CCC-BCSEE
T ss_pred EEEcCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEeCCCC-chh---hhc-cCCeE
Confidence 9999999999999999999999999999999999999999999999999988778888888887 432 333 67899
Q ss_pred EEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcCCCC
Q psy3751 897 VEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLK 964 (967)
Q Consensus 897 vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~~~~ 964 (967)
|+|++.+++.++++.|.+ |+++++++++++++|+++|++++++++++.+....++++++++||+++.
T Consensus 157 vl~~~~~~~~~i~~~L~~-g~~~~~~v~v~~~l~~~~E~i~~~~l~el~~~~~~~~~~~vivig~~~~ 223 (235)
T 1ve2_A 157 VLLMPLHTLGGLKERLLE-RFPPETPLALLARVGWPGEAVRLGRVEDLPGLGEGLPSPALLVVGKVVG 223 (235)
T ss_dssp EEEC------CHHHHHHT-TSCTTSEEEEEESTTSTTCEEEEEEGGGTTTTTTTCCSSEEEEESGGGG
T ss_pred EEEcChhhHHHHHHHHHh-cCCCCCeEEEEEECCcCCeEEEEEEHHHHHHHhcCCCCCEEEEEChHhh
Confidence 999999999999999999 8988999999999999999999999999975423578999999998875
No 22
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=100.00 E-value=7.1e-36 Score=316.72 Aligned_cols=222 Identities=29% Similarity=0.422 Sum_probs=194.1
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEE-ecccchHHHhcCCCc-eEEEecccccccchhHHHHHHHHHHHHhcCC
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKA-KHIFVGKRFKKHSIAQYIINRIIVKCAFKYN 814 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 814 (967)
+.+|+||+|||+|++||+||+++|++||+|+| ++++.+.++..++.. ..+..+ .+.++++.+.+++.+++|+
T Consensus 4 m~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~G~ 77 (264)
T 3ndc_A 4 MTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTA------PMSLDAIIDTIAEAHAAGQ 77 (264)
T ss_dssp CCEEEEECBSSCGGGSBHHHHHHHHHCSEEEECSTTSCGGGGGGSCTTCEEEECT------TSCHHHHHHHHHHHHHHTC
T ss_pred cEEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECCCCCHHHHhhcCCCCEEEecC------CCCHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999999 777777887776543 333322 3456777788889999999
Q ss_pred eEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccc-----ccccccc
Q psy3751 815 LVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTML-----KNNYLKN 889 (967)
Q Consensus 815 ~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~ 889 (967)
+||+|++|||+||+++.++++++.+.|++++|+|||||+++|+|++|+||++++.+.++.+++.|... ...+..+
T Consensus 78 ~Va~L~~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~s~~~~~~~~~~~~~l~~l 157 (264)
T 3ndc_A 78 DVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENF 157 (264)
T ss_dssp CEEEEESBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEEECCTTTCCCCTTCCHHHH
T ss_pred eEEEEeCCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEEeccCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889888877652 1346666
Q ss_pred CCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh-ccCCCcEEEEEcCCCCc
Q psy3751 890 IPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI-FQFEKPVLFMIGKSLKS 965 (967)
Q Consensus 890 ~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~-~~~~~~~vi~vg~~~~~ 965 (967)
+..+.|+|||++.+++.++++.|.++ +++++++++++++|+++|+++++||+++.+.. ...+++++|+||+++..
T Consensus 158 ~~~~~tlvl~~~~~~~~~i~~~L~~~-~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~viivg~~~~~ 233 (264)
T 3ndc_A 158 ARTGAVLAIHLSVHVLDEVVQKLVPH-YGEDCPVAIVWRASWPDQRVVRATLATLQTSLGAELERTALILVGRSLAT 233 (264)
T ss_dssp HTTTCEEEEESCGGGHHHHHHHHHHH-HCTTCEEEEEESTTSTTCEEEEEEGGGSCGGGSSSSCCCEEEEESGGGSC
T ss_pred hcCCCcEEEecCHHHHHHHHHHHHhh-CCCCCEEEEEEECCCCCeEEEEEEHHHHHHHHhccCCccEEEEEcCcCCc
Confidence 67789999999999999999999997 77899999999999999999999999998654 45789999999998864
No 23
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=100.00 E-value=4.1e-35 Score=308.32 Aligned_cols=222 Identities=34% Similarity=0.565 Sum_probs=192.0
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCeE
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLV 816 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V 816 (967)
|++|+||+|||+|++||+||+++|++||+|++++++.+.++++++ +..+..++.... ...++++.+.+.+.+++|++|
T Consensus 1 G~l~iVG~GpG~~~~LT~~A~~~L~~advI~~~~~~~~~~l~~~~-~~~i~~~~~~~~-~~~~~~~~~~i~~~~~~g~~V 78 (239)
T 1va0_A 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLALAP-GEKVYVGKEEGE-SEKQEEIHRLLLRHARAHPFV 78 (239)
T ss_dssp CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTSCHHHHTTCC-SEEEECCCCC-----CHHHHHHHHHHHHHTSSEE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEcCCCCHHHHhhcc-ccEEeccccccc-ccCHHHHHHHHHHHHHCCCcE
Confidence 578999999999999999999999999999999999999988776 555555543332 455677778888899999999
Q ss_pred EEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc--cccccCCCCC
Q psy3751 817 VRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN--NYLKNIPISD 894 (967)
Q Consensus 817 v~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 894 (967)
|+|++|||+||+++.++++++.+.|++++++|||||+++| |+||++++.+.++.+++.|..... .+..+... +
T Consensus 79 ~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa----g~pl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 153 (239)
T 1va0_A 79 VRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS----GLPLTHRGLAHGFAAVSGVLEGGGYPDLRPFARV-P 153 (239)
T ss_dssp EEEESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT----CCCSSBTTTBSEEEEEESSCGGGCCCCCTTTTTC-S
T ss_pred EEEeCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc----CCCcccCCccceEEEEeccCCccchhhHHHhcCC-C
Confidence 9999999999999999999999999999999999999999 999999887778888888865332 35555556 9
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcCCCCc
Q psy3751 895 TLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLKS 965 (967)
Q Consensus 895 t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~~~~~ 965 (967)
|+|+|++.+++.++++.|.+.|+++++++++++++|+++|++++++++++.+....++++++++||+++..
T Consensus 154 t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~el~~~~~~~~~~~vivig~~~~~ 224 (239)
T 1va0_A 154 TLVVLMGVGRRVWIAKELLRLGRDPREPTLFVERASTPKERRVHARLEEVAEGKVEVRPPALWILGEVVRV 224 (239)
T ss_dssp SEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEETTTSTTCEEEEEEHHHHHTTCCCCCSSEEEEESGGGGG
T ss_pred cEEEEccHHHHHHHHHHHHhcCCCCCCcEEEEEECCCCCcEEEEeEHHHHHhhhcCCCCCEEEEEchhhcc
Confidence 99999999999999999999999989999999999999999999999999863336789999999988754
No 24
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=100.00 E-value=3.3e-35 Score=337.04 Aligned_cols=230 Identities=37% Similarity=0.571 Sum_probs=201.5
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCC-CceEEEecccccccchhHHHHHHHHHHHHhcCC
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCP-KAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYN 814 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 814 (967)
.|.+|+||+|||+|++||++|+++|++||+|+||+++.+.++++++ .+..+++++....+...++++.+.+++.+++|+
T Consensus 215 ~g~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~d~~~~~~il~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~G~ 294 (457)
T 1pjq_A 215 RGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGK 294 (457)
T ss_dssp CCEEEEEECBSSCGGGSBHHHHHHHHHCSEEEECTTSCHHHHTTSCTTSEEEECSCC---CCCTTHHHHHHHHHHHHTTC
T ss_pred CcEEEEEeCCCCChHHccHHHHHHHHhCCEEEEeCCCCHHHHhhcccCCEEEeccccccccCCCHHHHHHHHHHHHHCCC
Confidence 4789999999999999999999999999999999999999998774 455666676655666778888888999999999
Q ss_pred eEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc--cccccCCC
Q psy3751 815 LVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN--NYLKNIPI 892 (967)
Q Consensus 815 ~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 892 (967)
+||+|++|||++|+++.++++++.+.|++++|+|||||+++|+|++|+||++++.+.++.++++|..... .|..+...
T Consensus 295 ~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~vsg~~~~~~~~~~~~l~~~ 374 (457)
T 1pjq_A 295 RVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAE 374 (457)
T ss_dssp EEEEEESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEECC------CCCHHHHHSS
T ss_pred cEEEEeCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEEeCCCCCcchhhHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998899999999875321 35556667
Q ss_pred CCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcCCCCc
Q psy3751 893 SDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLKS 965 (967)
Q Consensus 893 ~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~~~~~ 965 (967)
..|+||||+.+++.++++.|.++|+++++|+++++++|+|+|+++++||+++.+.....++|++++||+++..
T Consensus 375 ~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~viivg~~~~~ 447 (457)
T 1pjq_A 375 KQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVAL 447 (457)
T ss_dssp SEEEEESSCSSSHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHTTSCCSSEEEEESGGGGG
T ss_pred CCeEEEEcchhhHHHHHHHHHhcCCCCCCEEEEEEECCCCCcEEEEEEHHHHHHHhcCCCCCEEEEEChhhcc
Confidence 8999999999999999999999999999999999999999999999999999875456889999999998753
No 25
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=100.00 E-value=3.1e-34 Score=308.96 Aligned_cols=224 Identities=28% Similarity=0.471 Sum_probs=192.3
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEE-ecccchHHHhcCCC-ceEEEecccccccchhHHHHHHHHHHHHhc
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPK-AKHIFVGKRFKKHSIAQYIINRIIVKCAFK 812 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (967)
..+.+|+||+|||+|++||++|+++|++||+|+| ++++.+.++..++. +..+.. ..+.++++.+.+++.+++
T Consensus 19 ~~~~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~ 92 (285)
T 1cbf_A 19 SHMKLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKT------AGMHLEEMVGTMLDRMRE 92 (285)
T ss_dssp TTSEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCHHHHTTSCTTCEEEEC------TTCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHhcCCCCEEEec------CCCCHHHHHHHHHHHHHC
Confidence 3458999999999999999999999999999999 66777788876643 333332 234566777888889999
Q ss_pred CCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccc----cccccc
Q psy3751 813 YNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTML----KNNYLK 888 (967)
Q Consensus 813 g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 888 (967)
|++||+|++|||+||+++.++++++.+.|++++++|||||+++|+|++|+||+.++...++.+.+.+++. ...+..
T Consensus 93 g~~Vv~L~~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~~~~g~~~~~~~~~l~~ 172 (285)
T 1cbf_A 93 GKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTD 172 (285)
T ss_dssp TCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEEECCSSSCCCGGGCHHH
T ss_pred CCeEEEEeCCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEeccCCCCCcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877778777655531 234556
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCCCC
Q psy3751 889 NIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLK 964 (967)
Q Consensus 889 ~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~~~ 964 (967)
++....|+|||++.+++.++++.|.+.|+++++++++++++|+++|++++++++++.+.. ...+++++++||+.+.
T Consensus 173 l~~~~~tlvl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~lg~~~E~i~~~tl~el~~~~~~~~~~~~~viiig~~~~ 250 (285)
T 1cbf_A 173 LAKHKCTIALFLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWALD 250 (285)
T ss_dssp HHTTCSEEEEESCTTCHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHHHHTTCCSSEEEEESGGGC
T ss_pred HhcCCCeEEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEECCcCCcEEEEecHHHHHHHHHhcCCCCcEEEEEchHhc
Confidence 666789999999999999999999998898899999999999999999999999998653 4588999999998764
No 26
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=304.76 Aligned_cols=191 Identities=19% Similarity=0.291 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC----cEEEE
Q psy3751 25 EAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE----TLIVR 100 (967)
Q Consensus 25 ~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi----~i~~~ 100 (967)
.++++|+++++.+++++|+|||||||+|||||+.++..+ +.++.++|+|||++||+|++|+++++++||+ +++++
T Consensus 29 ~~~~~l~~a~~~~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~ 107 (261)
T 2oq2_A 29 TPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVY 107 (261)
T ss_dssp SHHHHHHHHHHHCSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEE
T ss_pred CHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 579999999999999999999999999999999999654 3478999999999999999999999999999 99999
Q ss_pred ecch-----hhhh--cccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCC
Q psy3751 101 SVED-----SIMK--GTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQ 173 (967)
Q Consensus 101 ~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~ 173 (967)
.++. .+.. +...+......+|..+|..++.++++++|.++|++|+|+||+..|+.+++++++..
T Consensus 108 ~~~~~~~~~~~~~~~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds~~R~~~~~~~~~~~--------- 178 (261)
T 2oq2_A 108 KPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDEL--------- 178 (261)
T ss_dssp CSTTCSSHHHHHHHHCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGCGGGGGCCSEEEETT---------
T ss_pred ecCCccCHHHHHHHhCCCccccChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccchHHHccCCceeecCC---------
Confidence 8763 1111 10001111234455567788999999999999999999999999998887775431
Q ss_pred CccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeE
Q psy3751 174 RPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMV 253 (967)
Q Consensus 174 ~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~ 253 (967)
++.++++||++||++|||+|++.++||||||| ..
T Consensus 179 --------------~~~~ki~PL~~wt~~dV~~Yi~~~~lp~~pLy--------------------------------~~ 212 (261)
T 2oq2_A 179 --------------NGILKINPLINWTFEQVKQYIDANNVPYNELL--------------------------------DL 212 (261)
T ss_dssp --------------TTEEEECTTTTCCHHHHHHHHHHHTCCCCGGG--------------------------------GG
T ss_pred --------------CCeEEEechHhCCHHHHHHHHHHcCCCCCchh--------------------------------hC
Confidence 13578999999999999999999999999999 57
Q ss_pred EEeccccccccccccCCc
Q psy3751 254 RFRTVGDILCTCPILSNA 271 (967)
Q Consensus 254 r~~~~gc~~~~~~v~s~~ 271 (967)
||.|+|||+||.++.++.
T Consensus 213 Gy~siGC~~ct~~~~~~~ 230 (261)
T 2oq2_A 213 GYRSIGDYHSTQPVKEGE 230 (261)
T ss_dssp TCSSCCBGGGCCCCCTTS
T ss_pred CCCCCCCcCCCCcCCCCC
Confidence 999999999999987653
No 27
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=284.15 Aligned_cols=194 Identities=19% Similarity=0.262 Sum_probs=178.4
Q ss_pred CCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCccccceeecCCeEEEEEc--cc
Q psy3751 545 DKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIK--EY 622 (967)
Q Consensus 545 ~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~~v~~a~~G~~v~l~l~--~~ 622 (967)
.++||+|||+++|+ +.| ++++|+|++|++++||+|.+.|.+++++|++|+++++++++|.|||+|+++|+ +.
T Consensus 3 ~~~p~rl~v~~v~~--g~G----~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMG----TVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSS----EEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCC----EEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCH
Confidence 36899999999997 455 89999999999999999999999999999999999999999999999999998 46
Q ss_pred cCCCCCcccccCCCCccccceeEEEEEEeccc-cccCCceEEEEEeeeEEEEEEeeeeeeeecCCCccC--CCccccCCC
Q psy3751 623 LDISRGNMLVSPFKRPVSLRSINANLCWLSEE-SLDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLND 699 (967)
Q Consensus 623 ~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-~i~~g~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~--~~~~l~~g~ 699 (967)
.+++|||+|+++++++..++.|+|++.||++. +|.+|+++++|+||.+++|+|.+|.+++|.+|++.. +|++|++||
T Consensus 77 ~di~rG~vl~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd 156 (204)
T 3e1y_E 77 EEILPGFILCDPNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQ 156 (204)
T ss_dssp SCCCTTCEEBCSSSCCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTC
T ss_pred HHCccceEEECCCCCCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCC
Confidence 78999999999988889999999999999984 799999999999999999999999999999998754 578999999
Q ss_pred EEEEEEeecCceeeccccCccCCccceeecccccccceEEEEEecCC
Q psy3751 700 IGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYIIGAGP 746 (967)
Q Consensus 700 ~a~v~l~l~~pi~~~~~~~~~~~grfil~d~~~~~~~~~~~~vg~g~ 746 (967)
.+.|+|++.+|+|+|+|++++.+|||+|||+ ++|+|.|.+..+-|
T Consensus 157 ~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~--~~Tva~G~V~~v~~ 201 (204)
T 3e1y_E 157 VCIARLRTAGTICLETFKDFPQMGRFTLRDE--GKTIAIGKVLKLVP 201 (204)
T ss_dssp EEEEEEEESSCCCCCCTTSSGGGTEEEEECS--SSCCEEEEEEEECC
T ss_pred EEEEEEEECCeEEEEEcccCcCCCCEEEEEC--CcEEEEEEEEEEec
Confidence 9999999999999999999999999999995 79999999987655
No 28
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=7e-33 Score=323.76 Aligned_cols=269 Identities=25% Similarity=0.279 Sum_probs=204.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..+||+++||+|||||||+++|++.++.+..+.. -.+++|++..|+++|+|+......+.+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~------------------~~~~~D~~~~ErerGITI~~~~~~~~~ 65 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK------------------REQLLDTLDVERERGITVKMQAVRMFY 65 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------------------------CCCCSEEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc------------------cccccccchhhhcccceeeeeEEEEEE
Confidence 46789999999999999999999987666533210 135689999999999999877666654
Q ss_pred C-----CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 402 P-----KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~-----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
. ...++|||||||.+|..++.++++.+|++|+|||+++ +.+.|+.+++..+...+++ +|+|+||||+
T Consensus 66 ~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~-------gv~~qt~~~~~~a~~~~ip-iIvviNKiDl 137 (600)
T 2ywe_A 66 KAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ-------GIEAQTVANFWKAVEQDLV-IIPVINKIDL 137 (600)
T ss_dssp ECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTT-------BCCHHHHHHHHHHHHTTCE-EEEEEECTTS
T ss_pred EcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCC-------CccHHHHHHHHHHHHCCCC-EEEEEeccCc
Confidence 3 2678999999999999999999999999999999999 8899999999999888987 8999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEe
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLV 556 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v 556 (967)
.+.+. +++.++ +.+.+++...+++++||++|.|++++ |..+++.+|.|....+.|+++.+.++
T Consensus 138 ~~a~~---~~v~~e---l~~~lg~~~~~vi~vSAktg~GI~~L-----------le~I~~~lp~p~~~~~~pl~~lV~~~ 200 (600)
T 2ywe_A 138 PSADV---DRVKKQ---IEEVLGLDPEEAILASAKEGIGIEEI-----------LEAIVNRIPPPKGDPQKPLKALIFDS 200 (600)
T ss_dssp TTCCH---HHHHHH---HHHTSCCCGGGCEECBTTTTBSHHHH-----------HHHHHHHSCCCCCCTTSCCEEEEEEE
T ss_pred cccCH---HHHHHH---HHHhhCCCcccEEEEEeecCCCchHH-----------HHHHHHhcccccccccCCcceeEEEE
Confidence 87653 233333 34445665456899999999999984 44456778888777789999999988
Q ss_pred ecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc---cccceeecCCeEEEE--EccccCCCCCccc
Q psy3751 557 ARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN---KSLDMAITGQSVTLI--IKEYLDISRGNML 631 (967)
Q Consensus 557 ~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~---~~v~~a~~G~~v~l~--l~~~~~i~~G~vl 631 (967)
+...+.| ++++|+|.+|++++||.|.+.+.+...+|++|..++ .+++++.|||++.+. +++..++++||+|
T Consensus 201 ~~d~~~G----~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl 276 (600)
T 2ywe_A 201 YYDPYRG----AVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTI 276 (600)
T ss_dssp EEETTTE----EEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEESSCCCTTSSCTTCEE
T ss_pred eecccce----EEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeeeccccchhhccCCCEE
Confidence 8887777 899999999999999999999999989999988654 468999999987775 2345689999999
Q ss_pred ccCCCC
Q psy3751 632 VSPFKR 637 (967)
Q Consensus 632 ~~~~~~ 637 (967)
+.++.+
T Consensus 277 ~~~~~~ 282 (600)
T 2ywe_A 277 THAKNP 282 (600)
T ss_dssp EESSSC
T ss_pred EeCCCc
Confidence 987554
No 29
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.9e-32 Score=320.13 Aligned_cols=277 Identities=19% Similarity=0.211 Sum_probs=201.9
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
..+.+||+|+||+|||||||+.+|+..+|.+. .+..+.. ++ -.-..++|+.+.|++|||||..+...+.
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~--~~G~V~~-----~~----~~~~~~~D~~~~EreRGITI~s~~~~~~ 96 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQ--MAGSVKA-----RK----AARHATSDWMAMERERGISVTTSVMQFP 96 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHH--HHHHHHH-----C------------------------CTTTEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCccc--ccceeec-----Cc----cccccccCChHHHHHCCCcEeeceEEEE
Confidence 34678999999999999999999999888762 1111111 10 0113468999999999999999999999
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
++++.|+|||||||.||..++.++++.+|+||+||||.+ |++.||+..+..+...++| .|++|||||+...+
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-------GV~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-------GVEAQTRKLMDVCRMRATP-VMTFVNKMDREALH 168 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-------BSCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCC
T ss_pred ECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-------CcccccHHHHHHHHHhCCc-eEEEEecccchhcc
Confidence 999999999999999999999999999999999999999 9999999999999999999 67789999998765
Q ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Q psy3751 481 QIFYKRIVYAYKKFAED--------------------------------------------------------------- 497 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~--------------------------------------------------------------- 497 (967)
- .++.+++++.+..
T Consensus 169 ~---~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (548)
T 3vqt_A 169 P---LDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLR 245 (548)
T ss_dssp H---HHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHH
T ss_pred h---hHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhh
Confidence 3 2333333332210
Q ss_pred --------c----------CCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCc---------CCCCCce
Q psy3751 498 --------I----------HFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEK---------IDKKPLR 550 (967)
Q Consensus 498 --------~----------~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~---------~~~~~~~ 550 (967)
. .-+-.|+++.||+++.|+..| |..+.+.+|.|.. ..+.||.
T Consensus 246 ~~~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~L-----------Ld~iv~~~PsP~~~~~~~~~~~~~~~p~~ 314 (548)
T 3vqt_A 246 MDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREM-----------LDMFVEFAPGPQPRPAATRVVEPGEEAFT 314 (548)
T ss_dssp HHHHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-----------HHHHHHHSCCSCCEEBSSSEECTTCSSCE
T ss_pred hHHHHHhhccCchhHHHHHhCCcceeeecccccCcCHHHH-----------HHHHHHhCCCCCCccccccccCCCCcCce
Confidence 0 001257889999999999983 3344455676642 2356888
Q ss_pred eeEEEeecC---CCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCcc----ccceeecCCeEEEEEcccc
Q psy3751 551 FPVQLVARH---CGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNK----SLDMAITGQSVTLIIKEYL 623 (967)
Q Consensus 551 ~~i~~v~~~---~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~~----~v~~a~~G~~v~l~l~~~~ 623 (967)
..+..+... +..| ++..+||.||+|+.|+.|+....+++.+|..+..+.. ++++|.|||+|++... .
T Consensus 315 a~vfKi~~~~~~~~~G----rla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl--~ 388 (548)
T 3vqt_A 315 GVVFKIQANMDKAHRD----RMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNH--G 388 (548)
T ss_dssp EEEEEEECC-----------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECS--S
T ss_pred EEEEEEEccCCcCCCC----eEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCC--c
Confidence 888777664 3444 7889999999999999999999999999988876543 6899999999998743 4
Q ss_pred CCCCCcccccCCC
Q psy3751 624 DISRGNMLVSPFK 636 (967)
Q Consensus 624 ~i~~G~vl~~~~~ 636 (967)
+++.||+|++.+.
T Consensus 389 ~~~~GDTl~~~~~ 401 (548)
T 3vqt_A 389 TIKIGDTFTESKE 401 (548)
T ss_dssp CCCTTCEEESSSS
T ss_pred cCccCCEecCCCC
Confidence 5788999998644
No 30
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=100.00 E-value=1.1e-33 Score=301.02 Aligned_cols=222 Identities=22% Similarity=0.118 Sum_probs=179.7
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEEecc-----cchHHHhcCCCceEEEecccccccchhHHHHHHHHHHH
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDAL-----ITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKC 809 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (967)
+.+++|+||+|||+|++||+||+++|++||+|+++.. ....++..+.....+..++. .++++.+.+++.
T Consensus 19 ~~~~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~~~~~~~L~~~~~~~~i~~~~~------~~~~~~~~i~~~ 92 (292)
T 3i4t_A 19 PGSMLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEFYGKKVIIGDRD------LVETEADQILEP 92 (292)
T ss_dssp -CCEEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGSSSCHHHHHHHHTSCCEEC-------------CCCTTHHH
T ss_pred CCCEEEEEEECCCChHHhhHHHHHHHHhCCEEEEecccccccCCHHHHHhCCCCeEEEcccc------cHHHHHHHHHHH
Confidence 3578999999999999999999999999999999876 56666654433333333321 123333456677
Q ss_pred HhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc----c
Q psy3751 810 AFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN----N 885 (967)
Q Consensus 810 ~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~----~ 885 (967)
+++ ++||+|++|||++|+++.++++++.+.|++++++|||||++| +|++|+||+.++.+.++.+++.|..+.. .
T Consensus 93 a~~-~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~A-~a~~G~pl~~~~~~~sv~~~t~~~~p~~~~~~~ 170 (292)
T 3i4t_A 93 AKT-KNVALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMNA-IGCSGLQLYRFGQTVSVCFWSEHWRPSSYYPKI 170 (292)
T ss_dssp HTT-SEEEEEESBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHHH-GGGGSCCGGGBCCCEEECCCBTTBCCCTHHHHH
T ss_pred hcC-CCEEEEecCCCCccccHHHHHHHHHHCCCcEEEECCHHHHHH-HHHhCCCcccCCceeEEEEEeCCCCCCccHHHH
Confidence 777 899999999999999999999999999999999999999984 6999999999999999999998876532 2
Q ss_pred ccccCCCCCcEEE------------------------Eecccc-HHHHHH---HHHhcCCCCCCcEEEEEecCCCCeEEE
Q psy3751 886 YLKNIPISDTLVE------------------------YMGGNN-IFLTAK---KLLKLGFLPTTPVIVVENCSLSNQKIT 937 (967)
Q Consensus 886 ~~~~~~~~~t~vl------------------------~~~~~~-~~~i~~---~L~~~g~~~~~~v~v~~~l~~~~E~i~ 937 (967)
+..+....+|+|| ||++++ +..+.+ .|.+.|+++++|+++++++|+++|+++
T Consensus 171 ~~~l~~~~~Tlvl~d~~~~e~~~~~~~~~~~~y~p~r~m~~~~~~~~L~~~~~~l~~~g~~~dtpv~vv~~~t~~~E~i~ 250 (292)
T 3i4t_A 171 KINRDNNMHTLVLLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKIV 250 (292)
T ss_dssp HHHHHTTCBEEEEECEECCC-------------CCCEECCHHHHHHHHHHHHHHHCCCSCCTTCEEEEEESTTSTTCEEE
T ss_pred HHHhhcCCCeEEEEeccccccchhhccccccccCCccccCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeecCCCceEEE
Confidence 4455567889999 888877 445555 666689999999999999999999999
Q ss_pred EEehhhHHHhhccCCCcEEEEEcCCCC
Q psy3751 938 RLILLDLKKKIFQFEKPVLFMIGKSLK 964 (967)
Q Consensus 938 ~~~l~~l~~~~~~~~~~~vi~vg~~~~ 964 (967)
++||+++.+..+..+.|+|||+|+.+.
T Consensus 251 ~~tL~~l~~~~~~~~~~~liivG~~l~ 277 (292)
T 3i4t_A 251 YGKMKDLLHYDFGAPMHCLLIPAPQVD 277 (292)
T ss_dssp EEEHHHHTTCCCCSSCEEEEECCSSCC
T ss_pred EEEHHHHHhhhcCCCCCEEEEECCcCC
Confidence 999999987656678999999998653
No 31
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=100.00 E-value=1.8e-32 Score=293.08 Aligned_cols=216 Identities=18% Similarity=0.152 Sum_probs=180.1
Q ss_pred cceEEEEEecCCCCcccccHHHHhccccccEEEE-ecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcC
Q psy3751 735 TVAAVYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKY 813 (967)
Q Consensus 735 ~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 813 (967)
..|.+|+||+||||+++||+||+++|++||+|++ ++++...++..++....+.. .+.+.+++..+.+++.+++|
T Consensus 14 ~~G~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~-----~~~~~~~~~~~~li~~l~~G 88 (296)
T 3kwp_A 14 TGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQIS-----FHEHNTQERIPQLIAKLKQG 88 (296)
T ss_dssp CCCEEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEE-----CSTTTHHHHHHHHHHHHHTT
T ss_pred cCceEEEeccCCCCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeee-----hhhcchhhHhHHHHHHHhcC
Confidence 4589999999999999999999999999999999 66888888887654333321 12334455667788899999
Q ss_pred CeEEEEE-cCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccc----ccccccc
Q psy3751 814 NLVVRLK-GGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTM----LKNNYLK 888 (967)
Q Consensus 814 ~~Vv~l~-~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~----~~~~~~~ 888 (967)
++||+|+ +|||+||+++.+|++++.++|++|+++|||||+++|+|++|+||.. +.|...++. ....+..
T Consensus 89 ~~Va~lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~------f~f~g~~p~~~~~r~~~l~~ 162 (296)
T 3kwp_A 89 MQIAQVSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQP------FYFYGFLDRKPKDRKAEIAG 162 (296)
T ss_dssp CEEEEECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSS------EEEEEECCSSHHHHHHHHHT
T ss_pred ceEEEeccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCc------eeEEeeccCCcHHHHHHHHH
Confidence 9999996 9999999999999999999999999999999999999999999942 222222221 1235667
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCC
Q psy3751 889 NIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKS 962 (967)
Q Consensus 889 ~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~ 962 (967)
+...+.|+|||++++++.++++.|.+. +++++++++++++|+++|+++++|++++.+.. ..+++++|||||..
T Consensus 163 l~~~~~tlV~y~~~~rl~~~l~~L~~~-~g~~~~v~v~~~lt~~~E~i~~gtl~el~~~~~~~~~~ge~vlvv~~~ 237 (296)
T 3kwp_A 163 LAQRPETLIFYEAPHRLKKTLQNLAAG-FGDERPAVLCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGGN 237 (296)
T ss_dssp TTTCCSEEEEEECGGGHHHHHHHHHHH-HCTTCEEEEEESTTSTTCEEEEEEHHHHHHHHHHSCCCSCEEEEECCC
T ss_pred hhcCCceeEeeeCcHHHHHHHHHHHHH-hCCcchhHHHHHHHHHHHHHHhccHHHHHhhhcccccceeEEEEEcCC
Confidence 777889999999999999999999986 66789999999999999999999999998764 34789999999864
No 32
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=6.1e-32 Score=316.82 Aligned_cols=269 Identities=19% Similarity=0.261 Sum_probs=199.5
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..+||+|+||+|||||||+++|++.++.+..+.. ..+++|+...|+++|+|+......+.+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~------------------~~~~~D~~~~ErerGiTi~~~~~~~~~ 63 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM------------------EAQVLDSMDLERERGITIKAQSVTLDY 63 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------------------------CEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc------------------cccccccchhhhcccceeeeeEEEEEE
Confidence 35789999999999999999999997777643211 135689999999999999887777655
Q ss_pred C-----CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 402 P-----KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~-----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
. +..++|||||||.+|...+.++++.+|++|+|||+++ +...|+.+++..+...++| +|+|+||+|+
T Consensus 64 ~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~-------gv~~qt~~~~~~~~~~~ip-iIvViNKiDl 135 (599)
T 3cb4_D 64 KASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQ-------GVEAQTLANCYTAMEMDLE-VVPVLNKIDL 135 (599)
T ss_dssp ECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTT-------CCCTHHHHHHHHHHHTTCE-EEEEEECTTS
T ss_pred ecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC-------CCCHHHHHHHHHHHHCCCC-EEEeeeccCc
Confidence 3 3689999999999999999999999999999999999 8889999999999888887 8999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEe
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLV 556 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v 556 (967)
.+.+. +++.+++ .+.+++...+++++||++|.|++++ +..+++.++.|....+.|+++.|.++
T Consensus 136 ~~a~~---~~v~~ei---~~~lg~~~~~vi~vSAktg~GI~~L-----------l~~I~~~lp~p~~~~~~p~~alI~d~ 198 (599)
T 3cb4_D 136 PAADP---ERVAEEI---EDIVGIDATDAVRCSAKTGVGVQDV-----------LERLVRDIPPPEGDPEGPLQALIIDS 198 (599)
T ss_dssp TTCCH---HHHHHHH---HHHTCCCCTTCEEECTTTCTTHHHH-----------HHHHHHHSCCCCCCTTSCCEEEEEEE
T ss_pred ccccH---HHHHHHH---HHHhCCCcceEEEeecccCCCchhH-----------HHHHhhcCCCccccccCCceeeeeec
Confidence 87653 2333333 3345654446899999999999984 44455667888777789999999999
Q ss_pred ecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc---cccceeecCCeEEEE--EccccCCCCCccc
Q psy3751 557 ARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN---KSLDMAITGQSVTLI--IKEYLDISRGNML 631 (967)
Q Consensus 557 ~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~---~~v~~a~~G~~v~l~--l~~~~~i~~G~vl 631 (967)
+..++.| ++++|+|.+|+++.||++.+.+.+...+|++|..++ .+++++.+||++.+. +++..++++||+|
T Consensus 199 ~~d~~~G----~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl 274 (599)
T 3cb4_D 199 WFDNYLG----VVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTL 274 (599)
T ss_dssp EEETTTE----EEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEEECCCSSGGGSCTTCEE
T ss_pred ccccccc----EEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEeeccccccccCccCCEe
Confidence 8888777 899999999999999999999999988999988754 468999999977764 2345679999999
Q ss_pred ccCCCC
Q psy3751 632 VSPFKR 637 (967)
Q Consensus 632 ~~~~~~ 637 (967)
++++.+
T Consensus 275 ~~~~~~ 280 (599)
T 3cb4_D 275 TLARNP 280 (599)
T ss_dssp EESSSC
T ss_pred eecCCc
Confidence 987554
No 33
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=99.98 E-value=7e-33 Score=290.66 Aligned_cols=220 Identities=12% Similarity=0.062 Sum_probs=163.7
Q ss_pred eEEEEEecCCCCcc---cccHHHHhccccccEEEE-ecccchHHHhcCCCceE-EEecccccccchhHHHHHHHHHHHHh
Q psy3751 737 AAVYIIGAGPGAAD---LITVRGARLLRKADVVLY-DALITNELLMLCPKAKH-IFVGKRFKKHSIAQYIINRIIVKCAF 811 (967)
Q Consensus 737 ~~~~~vg~g~g~~~---~lT~~a~~~l~~ad~v~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (967)
|++|+||+|||||+ +||+||+++|++||+|++ ++++...++..+..... +.. +........+++..+.+++.++
T Consensus 3 G~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~ 81 (242)
T 1wyz_A 3 TALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSL-TFYPLNKHTSPEDISGYLKPLA 81 (242)
T ss_dssp CSEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHHHHHHHHHHCSSSCTTCC-CCEECCSSCCHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcchHHHHHhcCCCCceeee-eeecccccCHHHHHHHHHHHHH
Confidence 67999999999998 799999999999999999 66667777765432211 000 0111112223444577888999
Q ss_pred cCCeEEEEE-cCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccc--cccccc
Q psy3751 812 KYNLVVRLK-GGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTML--KNNYLK 888 (967)
Q Consensus 812 ~g~~Vv~l~-~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 888 (967)
+|++||+|+ +|||++|+++.++++++.+.|+++++||||||+++|+|++|+|+. .+ .+.-+.+.... ...+..
T Consensus 82 ~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~-~f---~~~g~~p~~~~~~~~~l~~ 157 (242)
T 1wyz_A 82 GGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQ-SF---AFHGYLPIEPGERAKKLKT 157 (242)
T ss_dssp TTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSS-SE---EEEEECCSSTTHHHHHHHH
T ss_pred cCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCC-eE---EEEEEcCCCccchHHHHHH
Confidence 999999995 899999999999999999999999999999999999999999963 22 22211122111 134555
Q ss_pred cCCC----CCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccC-CCcEEEEEcCC
Q psy3751 889 NIPI----SDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQF-EKPVLFMIGKS 962 (967)
Q Consensus 889 ~~~~----~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~-~~~~vi~vg~~ 962 (967)
+++. ..|+||||+++++.++++.|.+. +++++++++++|+|+++|+++++|++++.+...+. ++|+|++||+-
T Consensus 158 l~~~~~~~~~t~vl~~~~~~~~~~~~~l~~~-~~~~~~v~vv~~~t~~~E~i~~~tl~~l~~~~~~~~~~P~i~vig~~ 235 (242)
T 1wyz_A 158 LEQRVYAESQTQLFIETPYRNHKMIEDILQN-CRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYKL 235 (242)
T ss_dssp HHHHHHHHTCEEEEEECGGGHHHHHHHHHHH-SCSSSEEEEEESTTSSSCEEEEEEHHHHSSCCC---CCCEEEEEEC-
T ss_pred HhcccccCCCeEEEEEcHHHHHHHHHHHHhc-CCCCCEEEEEEeCCCCCcEEEEeeHHHHHhhhhccCCCCEEEEEecc
Confidence 5555 79999999999999999999886 77899999999999999999999999998654455 79999999974
No 34
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=99.98 E-value=9e-33 Score=289.47 Aligned_cols=185 Identities=17% Similarity=0.250 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHH-HHHHHHHcCC----CcEEEEecChhHHHHHHHHHHhcCC-----------------C-CCCeeEEE
Q psy3751 16 NLYLDWLESEAIH-IMREVSAECN----NPVLLFSGGKDSVVLLRLAEKAFRP-----------------S-RFPFPMVH 72 (967)
Q Consensus 16 ~~~l~~~~~~a~~-~i~~~~~~~~----~i~va~SGGKDS~vlL~l~~~~~~~-----------------~-~~~i~~v~ 72 (967)
...++..++.+++ +|++++++++ +++++|||||||+|||||+.+++.+ . ..+++++|
T Consensus 32 ~~~~q~qir~S~~~iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvif 111 (308)
T 3fwk_A 32 IAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVF 111 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEE
Confidence 3457888888885 9999999995 5999999999999999999987410 0 14799999
Q ss_pred eeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHh
Q psy3751 73 IDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKA 152 (967)
Q Consensus 73 idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~ 152 (967)
+|||++||||++|+++++++||++++++.++.... ....||..++..+ +.++|++|.|++| ..
T Consensus 112 iDTG~~FpET~ef~d~~~~~ygL~L~v~~p~~~~~---------~~~~cc~~~K~~P-------~~~AwitG~RR~e-~~ 174 (308)
T 3fwk_A 112 IDHDDTFKTLENFIEETSLRYSLSLYESDRDKCET---------MAEAFETFLQVFP-------ETKAIVIGIRHTD-PF 174 (308)
T ss_dssp CCCTTCCHHHHHHHHHHHHHTTEEEEECCTTSCCC---------HHHHHHHHHHHCT-------TCCEEECCCCTTS-TT
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCcEEEeCCCCCHH---------HHHHHHHHHHhCC-------CCCEEEEEeecCC-cc
Confidence 99999999999999999999999999987753211 1123443333222 5899999999995 78
Q ss_pred hhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCE
Q psy3751 153 RAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGL 232 (967)
Q Consensus 153 R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~ 232 (967)
|+.++.++.++. .| + +.++++||++||+.|||.||+.++|||||||
T Consensus 175 Ra~l~~~e~~d~--~w----------~---------~~iKVnPL~dWT~~DVW~YI~~~~LPynpLY------------- 220 (308)
T 3fwk_A 175 GEHLKPIQKTDA--NW----------P---------DFYRLQPLLHWNLANIWSFLLYSNEPICELY------------- 220 (308)
T ss_dssp CTTCCSEEECCT--TS----------C---------SCEEECTTTTCCHHHHHHHHHHHTCCCCGGG-------------
T ss_pred cCCCCeeeccCC--CC----------C---------CeEEEechhhCCHHHHHHHHHHcCCCCCcHH-------------
Confidence 999988886432 11 1 3589999999999999999999999999999
Q ss_pred eecccCCCCCCCCccceeeeEEEeccccccccccccCC
Q psy3751 233 LIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSN 270 (967)
Q Consensus 233 l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~ 270 (967)
..||.|.||++||+|...=
T Consensus 221 -------------------d~GY~SIGC~~CT~pnp~L 239 (308)
T 3fwk_A 221 -------------------RYGFTSLGNVEETLPNPHL 239 (308)
T ss_dssp -------------------GGTCSSCCCTTTBCCCGGG
T ss_pred -------------------hcCCCCCCCCccCCCChhH
Confidence 6899999999999998743
No 35
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=99.98 E-value=5.1e-32 Score=288.14 Aligned_cols=219 Identities=16% Similarity=0.147 Sum_probs=170.2
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEecc------cchHHHhcC----C-CceEE----EecccccccchhHH
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDAL------ITNELLMLC----P-KAKHI----FVGKRFKKHSIAQY 800 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~------~~~~~~~~~----~-~~~~~----~~~~~~~~~~~~~~ 800 (967)
+|.+|+||+|||+|++||+||+++|++||+|+|+.. ..+.+..+. + .+..+ .+++........++
T Consensus 4 ~g~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (259)
T 2e0n_A 4 QGSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEASYA 83 (259)
T ss_dssp -CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTTCCEECHHHHHHTTTTCCGGGEEEEEEECC---------CG
T ss_pred CcEEEEEEeCCCChHHHHHHHHHHHHhCCEEEEeccccccccHHHHHHHHHHhcCCCCCEEEeeccCCccchhhhHHHHH
Confidence 588999999999999999999999999999999732 112221211 2 22222 23333222233345
Q ss_pred HHHHHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccc
Q psy3751 801 IINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSST 880 (967)
Q Consensus 801 ~~~~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~ 880 (967)
++.+.+++.+++|++||+|++|||+||+++.++++++.+.|++++++|||||+++|+|++|+||+.++..+ .+++++.
T Consensus 84 ~~~~~i~~~~~~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~~~--~~~~~~~ 161 (259)
T 2e0n_A 84 ANYASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSV--LVLAQID 161 (259)
T ss_dssp GGHHHHHHHHHTTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTCCE--EEECSCS
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCceE--EEEcCCC
Confidence 56677888889999999999999999999999999999999999999999999999999999998765443 4455553
Q ss_pred cccccccccCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEc
Q psy3751 881 MLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIG 960 (967)
Q Consensus 881 ~~~~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg 960 (967)
..+.+...+...+|+|||++.+++.++++.|.+.|++ +++++++|+++|++++ +++++.. ..+..+++++||
T Consensus 162 -~~~~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~----v~v~~~l~~~~E~i~~-~l~el~~--~~~~~~s~iii~ 233 (259)
T 2e0n_A 162 -EIGELERALVTHSTVVVMKLSTVRDELVSFLERYAKP----FLYAEKVGMAGEFITM-EVDALRS--RAIPYFSLLVCS 233 (259)
T ss_dssp -STHHHHHHHTTCSEEEECCTTSSGGGHHHHHHHHCSC----EEEEESTTSTTCEEEC-CTHHHHS--CCCCSSEEEEEC
T ss_pred -CHHHHHHHhhcCCEEEEEcccccHHHHHHHHHhCCCC----EEEEEECCCCCeEEEc-cHHHHhh--CCCCCcEEEEEe
Confidence 2244555566678999999999999999999998753 9999999999999999 9999975 357899999998
Q ss_pred CCCC
Q psy3751 961 KSLK 964 (967)
Q Consensus 961 ~~~~ 964 (967)
+...
T Consensus 234 ~~~~ 237 (259)
T 2e0n_A 234 PHCR 237 (259)
T ss_dssp GGGG
T ss_pred ccCC
Confidence 7653
No 36
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=99.97 E-value=6.9e-32 Score=285.01 Aligned_cols=216 Identities=17% Similarity=0.179 Sum_probs=163.4
Q ss_pred ccceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHH--HHHHHHHh
Q psy3751 734 QTVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIIN--RIIVKCAF 811 (967)
Q Consensus 734 ~~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 811 (967)
+..|.+|+||+|||||++||+||+++|++||+|++..+..+.+ .....+. +.... .++++. +.+++.++
T Consensus 6 ~~~~~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d~~~~~~-~~~~~~~-~~~~~-------~~~ei~~~~~li~~~~ 76 (251)
T 3nut_A 6 HMSGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARI-APREGLT-LHPTD-------NRVELDRATHALEMAA 76 (251)
T ss_dssp --CCEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECGGGGTTC-CCCTTCE-EEECC-------SSCCHHHHHHHHHHHH
T ss_pred cccccEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcCcccccc-cccCCCE-EeecC-------CHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999855544332 2222222 22111 111222 45778889
Q ss_pred cCCeEEEEEcCCCCCCCchHHHHHHHHH----CCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccccc--
Q psy3751 812 KYNLVVRLKGGDPMLFGRTDEELNALKK----YNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNN-- 885 (967)
Q Consensus 812 ~g~~Vv~l~~GDP~~~~~~~~l~~~l~~----~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~-- 885 (967)
+|++||+|++|||+|||++.++++++.+ .|++++|+|||||+++|+|++|+||++++...++. +...+...
T Consensus 77 ~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~s~~---~~~~~~~~~~ 153 (251)
T 3nut_A 77 EGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLS---DNLKPFEILE 153 (251)
T ss_dssp TTCEEEEEESBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSSSEEEEESC---CTTSCHHHHH
T ss_pred CCCeEEEEeCCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccCCeEEEEec---CCCCChHHHH
Confidence 9999999999999999999999999998 89999999999999999999999998765443322 21111111
Q ss_pred --ccccCCCCCcEEEEecc-----ccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEE
Q psy3751 886 --YLKNIPISDTLVEYMGG-----NNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFM 958 (967)
Q Consensus 886 --~~~~~~~~~t~vl~~~~-----~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~ 958 (967)
+..+.....|+||||+. .++.++.+.|.+ |+++++++++++++|+++|++++++++++.+ .....+++++
T Consensus 154 ~~l~~l~~~~~tlvl~~~~~~~~p~~i~~~~~ll~~-g~~~~~~v~v~~~l~~~~E~i~~~tl~~l~~--~~~~~~s~ii 230 (251)
T 3nut_A 154 KRLRHAARGDFAMAFYNPRSKSRPHQFTRVLEILRE-ECEPGRLILFARAVTTPEQAISVVELRDATP--EMADMRTVVL 230 (251)
T ss_dssp HHHHHHHHTTCEEEEESCSCSSSTTHHHHHHHHHHH-HSCTTCEEEEEESTTSTTCEEEEEEGGGCCG--GGCCTTEEEE
T ss_pred HHHHHHhCCCCEEEEECCccccchhHHHHHHHHHHh-CCCCCCEEEEEeeCCCCCcEEEEeEHHHHhh--cCCCCCEEEE
Confidence 22223456799999974 356666655554 6888999999999999999999999999975 4578999999
Q ss_pred EcCCCC
Q psy3751 959 IGKSLK 964 (967)
Q Consensus 959 vg~~~~ 964 (967)
||+.+.
T Consensus 231 Vg~~~~ 236 (251)
T 3nut_A 231 VGNAAT 236 (251)
T ss_dssp ECCSSC
T ss_pred ECCccc
Confidence 999875
No 37
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.97 E-value=3e-32 Score=287.72 Aligned_cols=187 Identities=22% Similarity=0.301 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHcCC-CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecc
Q psy3751 25 EAIHIMREVSAECN-NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVE 103 (967)
Q Consensus 25 ~a~~~i~~~~~~~~-~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~ 103 (967)
.+.++|+++++.++ +++|+|||||||+|||||+.++. +++.++|+|||++||++++|+++++++||++++++.++
T Consensus 32 ~~~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~ 107 (252)
T 2o8v_A 32 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRAT 107 (252)
T ss_dssp CHHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred CHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 78999999999984 89999999999999999999984 47999999999999999999999999999999999876
Q ss_pred hhhhhcccccC----C--CC-cccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcc
Q psy3751 104 DSIMKGTVRLR----K--PN-TDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPE 176 (967)
Q Consensus 104 ~~~~~~~~~~~----~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~ 176 (967)
..........+ . +. +.+|..+|..++.+++++.+.++|++|+|+||+..|+.++.++..
T Consensus 108 ~~~~~~~~~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds~~R~~l~~~~~~-------------- 173 (252)
T 2o8v_A 108 ESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQ-------------- 173 (252)
T ss_dssp SCHHHHHHHTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTTTCCTTSCSEEES--------------
T ss_pred CCHHHHHHHcCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccccccccccCceeecC--------------
Confidence 54221111111 1 11 223444677788888888888899999999999999888766411
Q ss_pred ccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEEEe
Q psy3751 177 LWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVRFR 256 (967)
Q Consensus 177 ~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~ 256 (967)
++..+++||++|+++|||+|++++++|||||| ..+|.
T Consensus 174 -----------~~~~~i~PL~~wt~~dV~~y~~~~~lp~~~Ly--------------------------------~~Gy~ 210 (252)
T 2o8v_A 174 -----------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLW--------------------------------DEGYL 210 (252)
T ss_dssp -----------SSSEEECGGGSCCHHHHHHHHHHTTCCCCTTT--------------------------------TTTCS
T ss_pred -----------CCeEEEechhhCCHHHHHHHHHHcCCCCChHH--------------------------------hCCCC
Confidence 12478999999999999999999999999999 57899
Q ss_pred ccccccccccccCCcC
Q psy3751 257 TVGDILCTCPILSNAT 272 (967)
Q Consensus 257 ~~gc~~~~~~v~s~~~ 272 (967)
|.|||+||+++.++++
T Consensus 211 siGC~~Ct~~~~~g~~ 226 (252)
T 2o8v_A 211 SVGDTHTTRKWEPGMA 226 (252)
T ss_dssp SCCBCTTTCC------
T ss_pred CCCCcCcCCcCCCCCC
Confidence 9999999999876644
No 38
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=99.97 E-value=1.5e-31 Score=285.68 Aligned_cols=218 Identities=22% Similarity=0.132 Sum_probs=169.6
Q ss_pred EEEEEecCCCCcccccHHHHhccccccEEEEeccc------chHHHhcCCCceEEEecccccccchhHHHHHHHHH-HHH
Q psy3751 738 AVYIIGAGPGAADLITVRGARLLRKADVVLYDALI------TNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIV-KCA 810 (967)
Q Consensus 738 ~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 810 (967)
++|+||+|||+|++||++|+++|++||+|+++... ...++..+.....+.. ....++++.+.++ +.+
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~i~~~~~ 75 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQRLIGKEIRVL------SREDVELNFENIVLPLA 75 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCTTCCHHHHHHHHTSCCEEE------CHHHHHHHHHHHTHHHH
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEeccccccccCCHHHHHhccCCcEEEc------CcccHHHHHHHHHHHHh
Confidence 48999999999999999999999999999986432 3455543322222221 1234455556666 666
Q ss_pred hcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc---cccc
Q psy3751 811 FKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK---NNYL 887 (967)
Q Consensus 811 ~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~---~~~~ 887 (967)
+ |++||+|++|||+||+++.++++++.++|++++|+|||||+++| |++|+||++++...++.+.+.|..+. +.+.
T Consensus 76 ~-g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aa-a~~g~pl~~~~~~~~v~~~s~~~~~~~~~~~l~ 153 (265)
T 2z6r_A 76 K-ENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAV-GITGLHIYKFGKSATVAYPEGNWFPTSYYDVIK 153 (265)
T ss_dssp T-TSCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHG-GGGTCCGGGBCCCEEECCCBTTBCCCHHHHHHH
T ss_pred C-CCcEEEEECCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHH-HHhCCCccCCCccEEEEEecCCcCCCchHHHHH
Confidence 6 78999999999999999999999999999999999999999999 99999999888888887777776542 2344
Q ss_pred ccCCCC-CcEEE---------Eeccc-cHHHHHHHHHh---cCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCC
Q psy3751 888 KNIPIS-DTLVE---------YMGGN-NIFLTAKKLLK---LGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEK 953 (967)
Q Consensus 888 ~~~~~~-~t~vl---------~~~~~-~~~~i~~~L~~---~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~ 953 (967)
..+..+ +|+|| ||+.+ ....+++.+.+ .|+++++++++++++|+++|++++++++++.+..+....
T Consensus 154 ~~~~~~~~tlvl~d~~~~~~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~ 233 (265)
T 2z6r_A 154 ENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPP 233 (265)
T ss_dssp HHHHTTCBEEEEECEEGGGTEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEEESTTSSSCEEEEEEHHHHTTCCCCSSC
T ss_pred HHHhCCCceEEEEecccccccccCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHhhhhcCCCC
Confidence 555544 89999 88765 23344444443 467889999999999999999999999999764333578
Q ss_pred cEEEEEcCCC
Q psy3751 954 PVLFMIGKSL 963 (967)
Q Consensus 954 ~~vi~vg~~~ 963 (967)
++++|+|+..
T Consensus 234 ~~lii~g~~~ 243 (265)
T 2z6r_A 234 HILIVPGKLH 243 (265)
T ss_dssp EEEEECCSCC
T ss_pred cEEEEECCCc
Confidence 9999999754
No 39
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.97 E-value=6.6e-31 Score=275.68 Aligned_cols=213 Identities=14% Similarity=0.145 Sum_probs=168.3
Q ss_pred eEEEEEecCCCCcccccHHHHhccccccEEEEeccc------chHHH-hcCC----CceEEE----ecccccccchhHHH
Q psy3751 737 AAVYIIGAGPGAADLITVRGARLLRKADVVLYDALI------TNELL-MLCP----KAKHIF----VGKRFKKHSIAQYI 801 (967)
Q Consensus 737 ~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~------~~~~~-~~~~----~~~~~~----~~~~~~~~~~~~~~ 801 (967)
|.+|+||+|||+|++||+||+++|++||+|+++.+. ...++ .+.+ .+..+. +++........+++
T Consensus 3 g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (232)
T 2qbu_A 3 GKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESHWDS 82 (232)
T ss_dssp CCEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCSSCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHHHHH
T ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCccchHHHHHHHHhccccCCcEEEEecCCCCccHHHHHHHHHH
Confidence 679999999999999999999999999999997653 12232 2222 233332 12222222334566
Q ss_pred HHHHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccc
Q psy3751 802 INRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTM 881 (967)
Q Consensus 802 ~~~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~ 881 (967)
+.+.+.+.+++|++||+|++|||+||+++.++++++.++|++++++|||||+++|+|++|+||+.++.. +.+++++..
T Consensus 83 ~~~~i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~--~~~~~~~~~ 160 (232)
T 2qbu_A 83 AARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEI--LLVVPRVDD 160 (232)
T ss_dssp HHHHHHHHHHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCC--EEEESSCCH
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCce--EEEEeCCHH
Confidence 777888889999999999999999999999999999999999999999999999999999999876544 344454432
Q ss_pred ccccccccCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcC
Q psy3751 882 LKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGK 961 (967)
Q Consensus 882 ~~~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~ 961 (967)
.+...+..++|+|||++.+++.++++.|.+.|++ +++++++++|+++|++++ +++ ..+..++++++++
T Consensus 161 ---~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~--~~v~v~~~l~~~~E~i~~-~l~------~~~~~ls~vii~~ 228 (232)
T 2qbu_A 161 ---RFERVLRDVDACVIMKTSRHGRRAMEVVESDPRG--KDVVSVANCSMDDEVVER-GFA------SGGGYLATTLVRF 228 (232)
T ss_dssp ---HHHHHGGGCSEEEESSHHHHHHHHHHHHHHSSSC--CEEEEEESTTSTTCEEEE-SCC------SCCCSSEEEEEEC
T ss_pred ---HHHHHhhcCCeEEEEcccCcHHHHHHHHHhcCCC--CcEEEEEECCCCCcEEEc-CCC------cCCCccEEEEEec
Confidence 4555555678999999999999999999998753 689999999999999998 465 3577899999987
Q ss_pred CC
Q psy3751 962 SL 963 (967)
Q Consensus 962 ~~ 963 (967)
.-
T Consensus 229 ~~ 230 (232)
T 2qbu_A 229 RE 230 (232)
T ss_dssp --
T ss_pred CC
Confidence 53
No 40
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.97 E-value=4.2e-31 Score=282.45 Aligned_cols=192 Identities=21% Similarity=0.291 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcC-CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEec
Q psy3751 24 SEAIHIMREVSAEC-NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSV 102 (967)
Q Consensus 24 ~~a~~~i~~~~~~~-~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~ 102 (967)
..+.++|+++++.+ ++++|+|| ||||+|||||+.++ ++++.++|+|||++||+|++|+++++++||++++++.+
T Consensus 40 ~~a~~~l~~a~~~~g~~i~Va~S-GkDS~vLL~Ll~~~----~~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~ 114 (275)
T 2goy_A 40 KSPQDILKAAFEHFGDELWISFS-GAEDVVLVDMAWKL----NRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSP 114 (275)
T ss_dssp SCHHHHHHHHHHHHSTTEEEECC-SSTTHHHHHHHHHH----CTTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECC
T ss_pred CCHHHHHHHHHHHcCCCEEEEee-cHHHHHHHHHHHHh----CCCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeC
Confidence 47899999999998 89999999 99999999999998 55799999999999999999999999999999999988
Q ss_pred chh-hhhcccccCC-----CCcccchhhc-HHHHHHHHHHcCCcEEEEeccchhh-HhhhccccccccccCCCCCCCCCC
Q psy3751 103 EDS-IMKGTVRLRK-----PNTDSRNAAQ-SITLLETIKEFKFDACIGGARRDEE-KARAKERIFSFRDKFGQWNPKSQR 174 (967)
Q Consensus 103 ~~~-~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~R~des-~~R~~~~~~~~~~~~~~~~~~~~~ 174 (967)
+.. +.......+. ..+..||..+ ..++.++++ +.++|++|+|+||+ ..|+.+++++.+..+.
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~r~l~--~~~~~itG~r~dds~~~R~~~~~~~~d~~~~-------- 184 (275)
T 2goy_A 115 DPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLA--GVRAWATGQRRDQSPGTRSQVAVLEIDGAFS-------- 184 (275)
T ss_dssp CHHHHHHHHHHHCSCHHHHHCTHHHHHHHTHHHHHHHHH--TCSEEECCCCGGGTTSCSCCCCSEEECTTTC--------
T ss_pred CccCHHHHHHHhCCCCccccCHHHHHHHHHHHHHHHHHH--hcCchhcCchhhhhhhhhhhCcccccccccc--------
Confidence 742 2211111111 1223455544 455555544 56799999999999 6999888887654210
Q ss_pred ccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecccCCCCCCCCccceeeeEE
Q psy3751 175 PELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIENLMVR 254 (967)
Q Consensus 175 p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~r 254 (967)
...++..+++||++|+++|||.|+++++||||+|| ..+
T Consensus 185 ----------~~~~g~~~i~PL~~wt~~dV~~Yi~~~~lp~~~Ly--------------------------------~~G 222 (275)
T 2goy_A 185 ----------TPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLH--------------------------------ERG 222 (275)
T ss_dssp ----------CSSSCCEEECTTTTCCHHHHHHHHHHTTCCCCGGG--------------------------------GGT
T ss_pred ----------cCCCCeEEEechHhCCHHHHHHHHHHhCCCCChHH--------------------------------HcC
Confidence 01123578999999999999999999999999999 578
Q ss_pred EeccccccccccccCCcC
Q psy3751 255 FRTVGDILCTCPILSNAT 272 (967)
Q Consensus 255 ~~~~gc~~~~~~v~s~~~ 272 (967)
|.|+|||+||.++.++++
T Consensus 223 y~siGC~~Ct~~~~~g~~ 240 (275)
T 2goy_A 223 YISIGCEPCTRPVLPNQH 240 (275)
T ss_dssp CSSCCCGGGBCCCCTTCC
T ss_pred CCCCCCccCCCCCCCCCc
Confidence 999999999999977643
No 41
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=99.97 E-value=8e-31 Score=283.10 Aligned_cols=217 Identities=16% Similarity=0.106 Sum_probs=171.1
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEeccc----ch---HHHhcCCCceEEEecccccccchhHHHHHHHHHH
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALI----TN---ELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVK 808 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (967)
.+++|+||+| |+|++||++|+++|++||+|+++... .. .++..++.+..+..+ ...++++.+.+++
T Consensus 7 ~~~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~i~~ 79 (294)
T 1wde_A 7 AVTLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEAS------RRDLEERSREIVS 79 (294)
T ss_dssp CCEEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHHHHHHHHHHTSSSEEECC------HHHHHTSHHHHTC
T ss_pred ceEEEEEECC-CChHHhhHHHHHHHHhCCEEEEecccccccccchHHHHHhccCCeEEecC------hHHHHHHHHHHHH
Confidence 3579999999 99999999999999999999998765 21 244443333333221 1233444556666
Q ss_pred HHhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeeccccccc---cc
Q psy3751 809 CAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLK---NN 885 (967)
Q Consensus 809 ~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~---~~ 885 (967)
.++ |++||+|++|||+||+++.++++++.++|++++|+|||||+++|+|++|+||+++++..++.+.+.+..+. +.
T Consensus 80 ~~~-g~~Vv~L~~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~~~~~~ 158 (294)
T 1wde_A 80 RAL-DAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARR 158 (294)
T ss_dssp CSS-CCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCHHHHHH
T ss_pred HhC-CCCEEEEeCCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCCChHHH
Confidence 666 99999999999999999999999999999999999999999999999999999877777766655443221 22
Q ss_pred ccccCC-CCCcEEEEecccc-----HHHHHHHHH---hc--------CC-CCCCcEEEEEecCCCCeEEEEEehhhHHHh
Q psy3751 886 YLKNIP-ISDTLVEYMGGNN-----IFLTAKKLL---KL--------GF-LPTTPVIVVENCSLSNQKITRLILLDLKKK 947 (967)
Q Consensus 886 ~~~~~~-~~~t~vl~~~~~~-----~~~i~~~L~---~~--------g~-~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~ 947 (967)
+...+. ..+|+|||++.++ +.++++.|. +. |+ ++++++++++++|+++|++++++++++.+
T Consensus 159 l~~~l~~~~~tlvl~~~~~~~~~m~~~~i~~~L~~l~~~l~~~~~~~G~~~~~~~v~v~~~lg~~~E~i~~~tl~el~~- 237 (294)
T 1wde_A 159 IYLNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLST- 237 (294)
T ss_dssp HHHHHHHTCEEEEEECBCTTSCBCCHHHHHHHHHHHHHHHHHHHTSCCCGGGSCEEEEECCGGGCCEEEEESCHHHHHT-
T ss_pred HHHHHhcCCCeEEEEecccccccccHHHHHHHHHHHHHhhhccccccCcCCCCCEEEEEEeCCCCCcEEEEeeHHHHhh-
Confidence 333233 3589999999887 888888888 77 76 67899999999999999999999999975
Q ss_pred hccC-CCcEEEEE-cCC
Q psy3751 948 IFQF-EKPVLFMI-GKS 962 (967)
Q Consensus 948 ~~~~-~~~~vi~v-g~~ 962 (967)
.++ +.+++++| |+.
T Consensus 238 -~~~~~~~~~iiI~g~~ 253 (294)
T 1wde_A 238 -ADVEGGVYSIVIPARL 253 (294)
T ss_dssp -CCCCCCCCEEEECSSC
T ss_pred -cccCCCCEEEEEeCCC
Confidence 454 67888888 753
No 42
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.97 E-value=2.3e-32 Score=326.42 Aligned_cols=272 Identities=22% Similarity=0.192 Sum_probs=211.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+++||+|+||+|||||||+.+|+..+|.+.. .| ..-+-..++|+.+.|++|||||..+...+.++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~------------~g---~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~ 65 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITE------------LG---SVDKGTTRTDNTLLERQRGITIQTGITSFQWE 65 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSS------------CS---SCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcc------------cc---ccccCCcccCCcHHHHhCCCcEEeeeEEEEEC
Confidence 3689999999999999999999998887632 11 12233467999999999999999999999999
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
++.++|||||||.||..++.++++.+|+||+||||.+ |++.||+.++.++...++| .|+++||||....+-.
T Consensus 66 ~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~-------GV~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~ 137 (638)
T 3j25_A 66 NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD-------GVQAQTRILFHALRKMGIP-TIFFINKIDQNGIDLS 137 (638)
T ss_dssp SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSC-------TTCSHHHHHHHHHHHHTCS-CEECCEECCSSSCCSH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCC-------CCcHHHHHHHHHHHHcCCC-eEEEEeccccccCCHH
Confidence 9999999999999999999999999999999999999 9999999999999999999 5677999998765421
Q ss_pred -HHHHHHHH--------------------------------------HHHHHHHcC----------------CccceEEe
Q psy3751 483 -FYKRIVYA--------------------------------------YKKFAEDIH----------------FQNINTIP 507 (967)
Q Consensus 483 -~~~~i~~~--------------------------------------~~~~~~~~~----------------~~~~~ii~ 507 (967)
..+++.+. +..++..-. ..-.|+++
T Consensus 138 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~ 217 (638)
T 3j25_A 138 TVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYH 217 (638)
T ss_dssp HHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCC
T ss_pred HHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccc
Confidence 11221110 011111100 01257888
Q ss_pred ccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEE
Q psy3751 508 ISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIV 587 (967)
Q Consensus 508 iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i 587 (967)
.||+++.|+..+ |..+.+.+|.|....+.||...+.++...++.| ++..+||.+|+|+.||.|.+
T Consensus 218 gSa~~~~Gv~~L-----------Ld~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G----~la~~RV~sG~l~~g~~v~~ 282 (638)
T 3j25_A 218 GSAKSNIGIDNL-----------IEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQ----RLAYIRLYSGVLHLRDSVRV 282 (638)
T ss_dssp CCSTTCCSHHHH-----------HHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTC----CCCBCCBSSBCCCSCCCSSS
T ss_pred cccccCCCchhH-----------hhhhhccccCcccchhhhhcceeeeeeeeccCc----eEEEEEEEcCcccCCCcccc
Confidence 999999999873 334446678887777789998888887777666 78899999999999999987
Q ss_pred ecCCcEEEEEEEEeCc----cccceeecCCeEEEEEccccCCCCCcccccCCC
Q psy3751 588 EPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIKEYLDISRGNMLVSPFK 636 (967)
Q Consensus 588 ~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~ 636 (967)
...+ +.+|..+.... .++++|.||++|++.. ..++.|+++++...
T Consensus 283 ~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 283 SEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN---EFLKLNSVLGDTKL 331 (638)
T ss_dssp CCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS---SSCSSEECSSSSSS
T ss_pred ccCc-ceeEEeeecccccccccccccccceEEEEec---cccccCceecCCCC
Confidence 6554 35566655433 3689999999998754 35677888887543
No 43
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.97 E-value=5.9e-30 Score=310.11 Aligned_cols=274 Identities=22% Similarity=0.206 Sum_probs=194.5
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.++++||+|+||+|||||||+.+|+..+|.+. ..|. .-+-..++|+.+.|++|||||..+...+.
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~------------~~g~---v~~~~~~~D~~~~E~eRGITI~s~~~s~~ 74 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNH------------KLGE---VHDGAATTDWMVQEQERGITITSAAVTTF 74 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHH------------HC---------------------------CCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCC------------cCce---ecCCCccCCChHHHHHcCCeEEeeeEEEE
Confidence 35789999999999999999999998555321 1111 11224568999999999999998888776
Q ss_pred cC-------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 401 TP-------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 401 ~~-------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
+. ++.++|||||||.||..++.++++.+|+||+||||.+ |++.||+..+..+...++| .|+++||
T Consensus 75 ~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave-------GV~~qT~~v~~~a~~~~lp-~i~~iNK 146 (709)
T 4fn5_A 75 WKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS-------GVEPQSETVWRQANKYGVP-RIVYVNK 146 (709)
T ss_dssp ECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT-------CSCHHHHHHHHHHHHHTCC-EEEEEEC
T ss_pred eccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC-------CCchhHHHHHHHHHHcCCC-eEEEEcc
Confidence 64 5789999999999999999999999999999999999 9999999999999999999 6778999
Q ss_pred CCccCcCHHHHHHHHHHHHHHH----------------------------------------------------------
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFA---------------------------------------------------------- 495 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~---------------------------------------------------------- 495 (967)
||+...+- ..+.++++..+
T Consensus 147 iDr~~a~~---~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 223 (709)
T 4fn5_A 147 MDRQGANF---LRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRS 223 (709)
T ss_dssp SSSTTCCH---HHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHH
T ss_pred ccccCccH---HHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHH
Confidence 99875432 12222222111
Q ss_pred ------------------HHc----------------CCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCC
Q psy3751 496 ------------------EDI----------------HFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTN 541 (967)
Q Consensus 496 ------------------~~~----------------~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~ 541 (967)
+.. ..+-.|++..||+++.|+..+ |..+++.+|.|
T Consensus 224 ~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~l-----------Ld~i~~~lPsP 292 (709)
T 4fn5_A 224 SMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLV-----------LDAVIDYLPAP 292 (709)
T ss_dssp HHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHH-----------HHHHHHHSCCT
T ss_pred HHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHH-----------HHHHHhhCCCC
Confidence 000 011246788899999998863 33445566766
Q ss_pred C--------------------cCCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEe
Q psy3751 542 E--------------------KIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQM 601 (967)
Q Consensus 542 ~--------------------~~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~ 601 (967)
. .+.+.||.+.|.++...+..| ++..|||.+|+|+.||+|+....+++.+|..+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G----~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~ 368 (709)
T 4fn5_A 293 TEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVG----TLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQ 368 (709)
T ss_dssp TSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTB----CCCEEEEEESCEETTCBCBCTTTCCCCBCCCEEC
T ss_pred cccccccccCCccccccccccCCccCcceEEEEEeecccCCC----ceEEEeccCCCCCCCCEEEEecCCcEEeecceeE
Confidence 3 234678998888888777666 7889999999999999999888888888888775
Q ss_pred Ccc----ccceeecCCeEEEEEccccCCCCCcccccCCCC
Q psy3751 602 LNK----SLDMAITGQSVTLIIKEYLDISRGNMLVSPFKR 637 (967)
Q Consensus 602 ~~~----~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~~ 637 (967)
... ++++|.||++|+|..- .++..||+|++.+.+
T Consensus 369 ~~g~~~~~v~~~~aGdIv~i~Gl--~~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 369 MHANQREEIKEVRAGDIAALIGM--KDVTTGDTLCSIEKP 406 (709)
T ss_dssp CCSSCCCEESEECTTCEEEECSC--SSCCTTCEEECSSSC
T ss_pred eecceeeEeeeecCCCeeeecCC--CcCccCCEecCCCcc
Confidence 543 6899999999998643 458899999986543
No 44
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=99.97 E-value=4.7e-30 Score=274.93 Aligned_cols=215 Identities=21% Similarity=0.228 Sum_probs=165.4
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhc--CCCceEEEecccccccchhHHHHHHHHHHHHhcC
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLML--CPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKY 813 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 813 (967)
||.+|+||+|||+|++||++|+++|++||+|++..+..+.+..+ ......+... . ....+..+.+++.+.+|
T Consensus 1 MG~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~~~l~ll~~~~~~~~k~~~~~~-~-----~~e~~~~~~~l~~a~~G 74 (295)
T 2zvb_A 1 MGELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYVKLLEEMGLLAGKEVVRKG-M-----TEELDRAEEALERALSG 74 (295)
T ss_dssp -CEEEEEECBTSSGGGSCHHHHHHHHHCSEEECCHHHHHHHHHHTCCTTSEEECTT-C-----CSHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCChHHHHHHHHHHHHcCCEEEEeCcHHHHHHHhhccCCCEEEecC-C-----chHHHHHHHHHHHHHCC
Confidence 47899999999999999999999999999999765544444333 2222222111 1 11223345667778899
Q ss_pred CeEEEEEcCCCCCCCchHHHHHHHHHCC--------------------CcEEEEcCchHHHHHHHhcCCccccCceeeEE
Q psy3751 814 NLVVRLKGGDPMLFGRTDEELNALKKYN--------------------IKVKVIPGITAALAAASESKQSLTKRNISRSV 873 (967)
Q Consensus 814 ~~Vv~l~~GDP~~~~~~~~l~~~l~~~~--------------------i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~ 873 (967)
++||+|++|||++|+++.++.+.+.+.+ ++++|||||||+++|+|++|+||+++ +
T Consensus 75 ~~Va~L~~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~~-----~ 149 (295)
T 2zvb_A 75 QRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHD-----T 149 (295)
T ss_dssp CEEEEEESBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSSC-----E
T ss_pred CcEEEEeCCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccCC-----C
Confidence 9999999999999999999999999865 99999999999999999999999754 3
Q ss_pred Eeeccccc--ccc----cccccCCCCCcEEEEecc-----ccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehh
Q psy3751 874 VLFTSSTM--LKN----NYLKNIPISDTLVEYMGG-----NNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILL 942 (967)
Q Consensus 874 ~~~~~~~~--~~~----~~~~~~~~~~t~vl~~~~-----~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~ 942 (967)
.+++.|.. +.+ .+........++|||++. +++.++++.|.+. +++++++++++++|+++|+++.++|+
T Consensus 150 ~~is~~~~~~~~~~l~~~l~~~~~~~~t~vl~~~~~~~r~~~~~~i~~~L~~~-~~~~~~v~vv~~l~~~~E~i~~~tL~ 228 (295)
T 2zvb_A 150 CLISLSDLLTPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEY-RPKETPAALVKSAYRKRQEVALTTLE 228 (295)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHTTCEEEEESCCCSSCTTHHHHHHHHHTTT-SCTTCEEEEEESTTSTTCEEEEEETG
T ss_pred eEEeCCCCCCCHHHHHHHHHHhhcCCcEEEEEcCCcccchhhHHHHHHHHHhc-CCCCCEEEEEecCCCCCcEEEEeeHH
Confidence 44444432 211 122223346789999963 3788999999887 56789999999999999999999999
Q ss_pred hHHHhhccCCCcEEEEEcCCCC
Q psy3751 943 DLKKKIFQFEKPVLFMIGKSLK 964 (967)
Q Consensus 943 ~l~~~~~~~~~~~vi~vg~~~~ 964 (967)
++.+ .....++++++|+...
T Consensus 229 el~~--~~~~~~svviig~~~~ 248 (295)
T 2zvb_A 229 GLRE--AEAGMLTTVVIGNRQS 248 (295)
T ss_dssp GGGG--CCCCTTEEEEECCTTC
T ss_pred HHHh--ccCCCCEEEEECCccc
Confidence 9975 3567899999998764
No 45
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.96 E-value=7e-30 Score=272.39 Aligned_cols=220 Identities=17% Similarity=0.081 Sum_probs=155.7
Q ss_pred cccceEEEEEecCCCCcccccHHHHhccccccEEEEecccc-----hHHHh-cCCCceEEEecccccccchhHHHHHHHH
Q psy3751 733 FQTVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALIT-----NELLM-LCPKAKHIFVGKRFKKHSIAQYIINRII 806 (967)
Q Consensus 733 ~~~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (967)
+...|.+|+||+|||||++||+||+++|++||+|+++.+.. ...+. +........ ....++++.+.+
T Consensus 9 ~~~~g~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i 81 (268)
T 1vhv_A 9 GGHMSLLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSSIEEMEEFFGKRVVEL-------ERSDLEENSFRL 81 (268)
T ss_dssp ----CEEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCSSCHHHHHHHHTSCCEEE-------CHHHHTTTHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCEEEECCchHhhhccHHHHHHHhCCCcccc-------chhHHHHHHHHH
Confidence 34568999999999999999999999999999999987651 11111 111110000 011233444566
Q ss_pred HHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccccc
Q psy3751 807 VKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNY 886 (967)
Q Consensus 807 ~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 886 (967)
++.+++ ++||+|++|||+||+++.++++++++.|+++++||||||+++|+|++|+||++++...++.+..+.. ..+..
T Consensus 82 ~~~a~~-~~Va~L~~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~~~~~~-~~~~~ 159 (268)
T 1vhv_A 82 IERAKS-KSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQT-PVNVI 159 (268)
T ss_dssp HHHHTT-SEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECSSCCSH-HHHHH
T ss_pred HHHhCC-CCEEEEeCCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEecCCCc-hHHHH
Confidence 677765 8999999999999999999999999999999999999999999999999999877666664311111 11112
Q ss_pred -cccCCCCCcEEE------EeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcE-EEE
Q psy3751 887 -LKNIPISDTLVE------YMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPV-LFM 958 (967)
Q Consensus 887 -~~~~~~~~t~vl------~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~-vi~ 958 (967)
..+....+|+|+ ||++.++.+.+..|. .+++ ++++++++++|+|+|++++++++++.+... ..+++ |+|
T Consensus 160 ~~~l~~~~~tlvl~d~~~~~~~~~~~~~~L~~l~-~~~~-~~~v~v~~~l~~~~E~i~~~tl~el~~~~~-~~~~~~liI 236 (268)
T 1vhv_A 160 KANRSIDAHTLLFLDLHPEPMTIGHAVENLIAED-AQMK-DLYAVGIARAGSGEEVVKCDRLENLKKIDF-GKPLHVMVV 236 (268)
T ss_dssp HHHHHTTCBEEEEECCSSSCCCHHHHHHHHHHHC-GGGG-GSEEEEEESTTSSSCEEEEEEGGGGGGSCC-CSSCEEEEE
T ss_pred HHHhccCCCeEEEEcCchhhcCHHHHHHHHHHHH-hcCC-CcEEEEEEcCCCCceEEEEEEHHHHHHhhc-CCCCeEEEE
Confidence 123345789999 777665544333333 3466 899999999999999999999999975332 34565 555
Q ss_pred EcCCCC
Q psy3751 959 IGKSLK 964 (967)
Q Consensus 959 vg~~~~ 964 (967)
+|+.+.
T Consensus 237 ~~~~~~ 242 (268)
T 1vhv_A 237 LAKTLH 242 (268)
T ss_dssp CCSSCC
T ss_pred ECCcCC
Confidence 577553
No 46
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.96 E-value=3.5e-29 Score=290.86 Aligned_cols=274 Identities=19% Similarity=0.187 Sum_probs=209.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..++|+|+||+|||||||+++|++..+.+.. ...+. .. .-.....+|+...|+++|+|++.....+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~--~g~v~---~~------~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 79 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQL--AGTIK---SR------KAARHATSDWMELEKQRGISVTTSVMQFPY 79 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHH--HHHHH---TC----------CCHHHHHHHHHHHCCSSSSSEEEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCccc--ceeee---cc------ccccceecccchhhhcCCeeEEEeEEEEEe
Confidence 45789999999999999999999987766511 11111 00 001123468888999999999999999999
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
.+..++|||||||.+|...+.++++.+|++|+|||+++ +...++..++..+...++| +|+|+||+|+...+.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~-------g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~ 151 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK-------GVEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPS 151 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTT-------CSCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCH
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCC-------CCCHHHHHHHHHHHHcCCC-EEEEEeCCCCccccH
Confidence 99999999999999999999999999999999999999 8899999999999988887 889999999976543
Q ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Q psy3751 482 IFYKRIVYAYKKFAED---------------------------------------------------------------- 497 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~---------------------------------------------------------------- 497 (967)
. +..+++++.+..
T Consensus 152 ~---~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e 228 (528)
T 3tr5_A 152 I---ELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRN 228 (528)
T ss_dssp H---HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHH
T ss_pred H---HHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhh
Confidence 2 222222222210
Q ss_pred -----------------cCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcC---------CCCCcee
Q psy3751 498 -----------------IHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKI---------DKKPLRF 551 (967)
Q Consensus 498 -----------------~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~---------~~~~~~~ 551 (967)
..-.-.|++++||++|.|+.++ |..+.+.+|.|... .+.||..
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~L-----------ld~i~~~~p~p~~~~~~~~~~~~~~~~~~~ 297 (528)
T 3tr5_A 229 EIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGEL-----------LDAFVKEAPPPQGRETNSRLVKPEEEKFSG 297 (528)
T ss_dssp HHHHHHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-----------HHHHHHHSCCCCCBCBSSSCBCTTSSSCEE
T ss_pred hcchhhhhhhHHHHHHHhcCceeEEEeccccCCccHHHH-----------HHHHHHhCCCCCcccccceeeCCCccccee
Confidence 0001237899999999999984 33334445655432 2478888
Q ss_pred eEEEeec--CC-CccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeC----ccccceeecCCeEEEEEccccC
Q psy3751 552 PVQLVAR--HC-GHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQML----NKSLDMAITGQSVTLIIKEYLD 624 (967)
Q Consensus 552 ~i~~v~~--~~-~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~l~l~~~~~ 624 (967)
.|.++.. .+ +.| ++..+||.+|+|+.|+.|...+.+++.+|.++..+ ..++++|.|||+|++.-. .+
T Consensus 298 ~VFKi~~~~dp~~~g----~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l--~~ 371 (528)
T 3tr5_A 298 FVFKIQANMDPGHRD----RIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNH--GT 371 (528)
T ss_dssp EEEEEEECCC-CCCC----EEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEES--SS
T ss_pred EEEEEecccCccCCc----eEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCC--CC
Confidence 7877763 33 555 89999999999999999999999999999998864 347999999999987543 45
Q ss_pred CCCCcccccC
Q psy3751 625 ISRGNMLVSP 634 (967)
Q Consensus 625 i~~G~vl~~~ 634 (967)
++.||+|++.
T Consensus 372 ~~~GDtl~~~ 381 (528)
T 3tr5_A 372 IQIGDTFTQG 381 (528)
T ss_dssp CCTTCEEESS
T ss_pred CccCCEEcCC
Confidence 7889999974
No 47
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.96 E-value=1.6e-28 Score=295.67 Aligned_cols=273 Identities=21% Similarity=0.189 Sum_probs=214.0
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+..+||+|+||+|||||||+++|+...+.+... |. .-+-.+++|+.+.|+++|+|+......+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~------------g~---v~~g~~~~D~~~~E~~rgiTi~~~~~~~~ 71 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKI------------GE---VHDGAATMDWMEQEQERGITITSAATTAF 71 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccc------------cc---cCCCceeecChhhHHhcCceeeeceEEEE
Confidence 3567899999999999999999999866654211 00 00113568999999999999999888888
Q ss_pred cCC-------ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 401 TPK-------RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 401 ~~~-------~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
+.+ ..++|||||||.+|...+.++++.+|++|+|||+++ +...|+.+++..+...+++ +++|+||
T Consensus 72 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~-------gv~~qt~~~~~~~~~~~ip-~ilviNK 143 (704)
T 2rdo_7 72 WSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVG-------GVQPQSETVWRQANKYKVP-RIAFVNK 143 (704)
T ss_pred ECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCC-------CCcHHHHHHHHHHHHcCCC-EEEEEeC
Confidence 776 899999999999999999999999999999999999 8889999999998888888 7788999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHc---------------------------------C---------------------
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDI---------------------------------H--------------------- 499 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~---------------------------------~--------------------- 499 (967)
+|+...+ +.++.++++..+... |
T Consensus 144 iD~~~~~---~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 220 (704)
T 2rdo_7 144 MDRMGAN---FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQ 220 (704)
T ss_pred CCccccc---HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHH
Confidence 9987643 223333333222110 0
Q ss_pred --------------------------------------CccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCC
Q psy3751 500 --------------------------------------FQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTN 541 (967)
Q Consensus 500 --------------------------------------~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~ 541 (967)
-.-+|+++.||++|.|+..+ |..+++.+|.|
T Consensus 221 ~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~L-----------Ld~i~~~lPsP 289 (704)
T 2rdo_7 221 NLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAM-----------LDAVIDYLPSP 289 (704)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHH-----------HHHHHHHCCCh
Confidence 01147888999999999874 33334455655
Q ss_pred Cc--------------------CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEe
Q psy3751 542 EK--------------------IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQM 601 (967)
Q Consensus 542 ~~--------------------~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~ 601 (967)
.. +.+.||.+.|.+++..++.| ++.+|||.+|+|+.||.|+..+.+++.+|.+|..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G----~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~ 365 (704)
T 2rdo_7 290 VDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVG----NLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQ 365 (704)
T ss_pred hhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCc----eEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEE
Confidence 32 14678999999999888777 8899999999999999999999998999999886
Q ss_pred Cc----cccceeecCCeEEEEEccccCCCCCcccccCCC
Q psy3751 602 LN----KSLDMAITGQSVTLIIKEYLDISRGNMLVSPFK 636 (967)
Q Consensus 602 ~~----~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~ 636 (967)
.+ .++++|.||++|++.. ..++++||+|++.+.
T Consensus 366 ~~g~~~~~v~~~~aGdIv~i~g--l~~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 366 MHANKREEIKEVRAGDIAAAIG--LKDVTTGDTLCDPDA 402 (704)
T ss_pred EeCCCceEcceeCCCCEEEEeC--cccCccCCEEeCCCc
Confidence 53 4799999999999984 345789999998643
No 48
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=99.96 E-value=6.7e-30 Score=269.78 Aligned_cols=203 Identities=19% Similarity=0.155 Sum_probs=154.4
Q ss_pred cccceEEEEEecCCCCcccccHHHHhccccccEEEEecc-cc--------hHHHhc-CCC--ceEEEecccccc------
Q psy3751 733 FQTVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDAL-IT--------NELLML-CPK--AKHIFVGKRFKK------ 794 (967)
Q Consensus 733 ~~~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~-~~--------~~~~~~-~~~--~~~~~~~~~~~~------ 794 (967)
...+|.+|+||+|||||++||+||+++|++||+|+++.. .. ..++.. .+. ...+.+++....
T Consensus 18 ~~m~g~ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~~a~~il~~~~~~~~~~~i~~~~pm~~~~~~~Y 97 (275)
T 3nd1_A 18 GSHMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPSY 97 (275)
T ss_dssp --CCEEEEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHHHHHHHHHHHCCCTTCEEEEECCCCC-------
T ss_pred CCCCcEEEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhhhHHHHHHHhhcccCcEEEEecCCccccccchh
Confidence 344689999999999999999999999999999999642 22 556654 333 455555542111
Q ss_pred -------cchhHHHHHHHHHHHHhc-CCeEEEEEcCCCCCCCchHHHHHHHHH-CCCcEEEEcCchHHHHHHHhcCCccc
Q psy3751 795 -------HSIAQYIINRIIVKCAFK-YNLVVRLKGGDPMLFGRTDEELNALKK-YNIKVKVIPGITAALAAASESKQSLT 865 (967)
Q Consensus 795 -------~~~~~~~~~~~~~~~~~~-g~~Vv~l~~GDP~~~~~~~~l~~~l~~-~~i~v~viPGiss~~aa~a~~g~~l~ 865 (967)
+...++++.+.+++.+++ |++||+|++|||+||+++.++++++.+ .|++++|||||||+++|+|++|+||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Va~l~~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~pl~ 177 (275)
T 3nd1_A 98 RKGVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPLN 177 (275)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCTTSCEEEEEEESBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTCCSS
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCCCCc
Confidence 223344556678889999 999999999999999999999999998 79999999999999999999999998
Q ss_pred cCceeeEEEeecccccccccccccCCC-CCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhH
Q psy3751 866 KRNISRSVVLFTSSTMLKNNYLKNIPI-SDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDL 944 (967)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l 944 (967)
+.+. .+.+++++.... . ..+.. ..++|+|++.+++.+|+ .+++++++++++|+++|+++++||+++
T Consensus 178 ~~~~--~~~~l~g~~~~~--~-~~~~~~~~~vvl~~~~~~l~~i~--------~~~~~v~v~~~l~~~~E~i~~gtL~el 244 (275)
T 3nd1_A 178 DIGA--PVVITTGRQLRD--H-GWPAGTETVVAMLDGECSFQSLP--------PDGLTIFWGACVAMPEEVLIRGPVAEV 244 (275)
T ss_dssp CTTC--CEEEEEHHHHHH--H-CSCTTCSEEEEESCSSCGGGGSC--------CTTEEEEEEESTTSTTCEEEEEEHHHH
T ss_pred cCCc--EEEEEcCCCcch--H-HHHhCCCCEEEEECCcccHHHHh--------CCCCEEEehhccCCCCcEEEEEEHHHH
Confidence 8643 355555554221 1 22333 44556777777665432 257899999999999999999999999
Q ss_pred HHhh
Q psy3751 945 KKKI 948 (967)
Q Consensus 945 ~~~~ 948 (967)
.+..
T Consensus 245 ~~~~ 248 (275)
T 3nd1_A 245 TDEI 248 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 49
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.96 E-value=1.4e-28 Score=286.27 Aligned_cols=274 Identities=18% Similarity=0.163 Sum_probs=187.5
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...+||+++||+|||||||+++|++..+.+...- .+.. + .. ....++|+...|+++|+|++.....+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g--~v~~-----~---~~-~~~~~~D~~~~E~~rGiTi~~~~~~~~~ 79 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAG--TVKG-----R---GS-NQHAKSDWMEMEKQRGISITTSVMQFPY 79 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC------------------------------------------CCTTEEEEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccc--eeec-----C---cc-ccceeeccchhcccCCcceeeeEEEEEE
Confidence 3568999999999999999999998666542110 0000 0 00 0123578888999999999999888999
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
++..++|||||||.+|...+.++++.+|++|+|+|+++ +...|+.+++..+...++| +|+|+||+|+...+.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~-------g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK-------GVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP 151 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTT-------CSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCc-------cchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH
Confidence 99999999999999999999999999999999999999 8889999999988888888 899999999986543
Q ss_pred HHHHHHHHHHHHHHHHc---------------------------------------------------------------
Q psy3751 482 IFYKRIVYAYKKFAEDI--------------------------------------------------------------- 498 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~--------------------------------------------------------------- 498 (967)
. ++.+++++.+...
T Consensus 152 ~---~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~ 228 (529)
T 2h5e_A 152 M---ELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLR 228 (529)
T ss_dssp H---HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHH
T ss_pred H---HHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhh
Confidence 1 2222222221100
Q ss_pred -------------------CCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhc-ccCCCcC---------CCCCc
Q psy3751 499 -------------------HFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLES-LNTNEKI---------DKKPL 549 (967)
Q Consensus 499 -------------------~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~-~~~~~~~---------~~~~~ 549 (967)
.....|+++.||++|.|+.. |++.+.. +|.|... .+.||
T Consensus 229 e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~ 296 (529)
T 2h5e_A 229 DELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDH------------MLDGLVEWAPAPMPRQTDTRTVEASEDKF 296 (529)
T ss_dssp HHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHH------------HHHHHHHHSCSSCCEEBSSCEECTTCCSC
T ss_pred cccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHH------------HHHHHHHhCCCCCcccccccccCCCCCCe
Confidence 00123566667777777665 5555444 5555321 13577
Q ss_pred eeeEEEeec---CCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeC----ccccceeecCCeEEEEEccc
Q psy3751 550 RFPVQLVAR---HCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQML----NKSLDMAITGQSVTLIIKEY 622 (967)
Q Consensus 550 ~~~i~~v~~---~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~l~l~~~ 622 (967)
...+.++.. ..+.| ++.+|||.+|+|+.||.|.+.+.+++.+|++|..+ +.++++|.|||+|++...
T Consensus 297 ~~~vfKi~~~~d~~~~G----~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l-- 370 (529)
T 2h5e_A 297 TGFVFKIQANMDPKHRD----RVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNH-- 370 (529)
T ss_dssp EEEEEEECSSCCSSSSC----CCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCS--
T ss_pred EEEEEEEeeccCcCCCc----eEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEecc--
Confidence 766665543 22334 78999999999999999999999999999999976 457999999999988743
Q ss_pred cCCCCCcccccCC
Q psy3751 623 LDISRGNMLVSPF 635 (967)
Q Consensus 623 ~~i~~G~vl~~~~ 635 (967)
.+++.||+|++++
T Consensus 371 ~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 371 GTIQIGDTFTQGE 383 (529)
T ss_dssp SCCCTTCEEESSC
T ss_pred CCCccCCEeecCC
Confidence 4578899999864
No 50
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.96 E-value=3.3e-31 Score=305.71 Aligned_cols=253 Identities=21% Similarity=0.247 Sum_probs=197.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec-
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT- 401 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~- 401 (967)
..++|+++||+|||||||+++|++. ....+...|+|.++....+.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~---------------------------------~~~~~~~~giT~~i~~~~v~~~ 49 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKT---------------------------------QVAAMEAGGITQHIGAFLVSLP 49 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHH---------------------------------HHHHSSSCCBCCCTTSCCBCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---------------------------------CcccccCCceeEEEeEEEEEeC
Confidence 3467999999999999999999861 011223468888888887777
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
++..++|||||||++|...+.++++.+|++|||+|+++ +.++|+.+++..+...++| +|+|+||+|+.+.+.
T Consensus 50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-------g~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~ 121 (537)
T 3izy_P 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-------GVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP 121 (537)
T ss_dssp CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-------CCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC
T ss_pred CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-------CccHHHHHHHHHHHHcCCc-EEEEEecccccccch
Confidence 56789999999999999999999999999999999999 8999999999999999987 999999999976432
Q ss_pred HHHHHHHHHHHHH---HHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeec
Q psy3751 482 IFYKRIVYAYKKF---AEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVAR 558 (967)
Q Consensus 482 ~~~~~i~~~~~~~---~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~ 558 (967)
.. +..++..+ ...++ .+++++++||++|.|++++.+. +...++ .+.+....+.|+++++.+++.
T Consensus 122 ~~---v~~~l~~~~~~~e~~~-~~~~iv~vSAktG~GI~eLle~--------I~~l~~-~~~~~~~~~~~~~~~V~e~~~ 188 (537)
T 3izy_P 122 EK---VKKELLAYDVVCEDYG-GDVQAVHVSALTGENMMALAEA--------TIALAE-MLELKADPTGAVEGTVIESFT 188 (537)
T ss_dssp CS---SSSHHHHTTSCCCCSS-SSEEECCCCSSSSCSSHHHHHH--------HHHHHT-TCCCCCCSSSSEEEEEEEECC
T ss_pred HH---HHHHHHhhhhhHHhcC-CCceEEEEECCCCCCchhHHHH--------HHHhhh-cccccCCCCCCcceeEEEEEE
Confidence 21 11112111 11122 2468999999999999985331 222222 233344456899999999999
Q ss_pred CCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc-cccceeecCCeEEEEEccccCCCCCcccccCCC
Q psy3751 559 HCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN-KSLDMAITGQSVTLIIKEYLDISRGNMLVSPFK 636 (967)
Q Consensus 559 ~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~-~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~ 636 (967)
..+.| ++++|+|.+|+|++||.+.. +....+|++|+.++ .++++|.||++|+|...+ ..+.+||+|+..++
T Consensus 189 ~~g~G----~V~~g~V~~G~l~~Gd~v~~--g~~~~kVr~i~~~~g~~v~~A~~G~~V~i~g~~-~~~~~Gd~l~~~~~ 260 (537)
T 3izy_P 189 DKGRG----PVTTAIIQRGTLRKGSILVA--GKSWAKVRLMFDENGRAVNEAYPSMPVGIIGWR-DLPSAGDEILEVES 260 (537)
T ss_dssp CTTCC----CCEEEEEEEECCSSEEEECC--SSCCEEEEEEEECCCCCSCCSCCSTTCCCCSSE-EEEEEESSCCSCCS
T ss_pred eCCCc----eEEEEEEecCEEEcCCEEEe--CCceEEEEEEEcCCCCCCcEEcCCCEEEEECCC-CCCCCCCEEEecCC
Confidence 98887 89999999999999998754 34558999999986 689999999999997554 23588999998744
No 51
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.96 E-value=4.5e-30 Score=293.73 Aligned_cols=249 Identities=18% Similarity=0.173 Sum_probs=193.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++||+|||||||+++|++.. + .....+|+|++.....+.++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~------------------------v---------~~~e~~GIT~~i~~~~v~~~ 49 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK------------------------V---------ASGEAGGITQHIGAYHVETE 49 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH------------------------H---------SBTTBCCCCCCSSCCCCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC------------------------C---------ccccCCCeeEeEEEEEEEEC
Confidence 45789999999999999999998610 0 01123689999988888888
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHH
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~ 482 (967)
+..++|||||||++|...+.++++.+|++|||||+++ +.++||.+++..+...++| +|+|+||+|+.+++.+
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~-------g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~ 121 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADD-------GVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPD 121 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTT-------BSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCC
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeeccc-------CccHHHHHHHHHHHhcCce-EEEEEEeccccccCHH
Confidence 8999999999999999999999999999999999999 8899999999999999998 9999999999864321
Q ss_pred HHHHHHHHHHH---HHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhc---ccCCCcCCCCCceeeEEEe
Q psy3751 483 FYKRIVYAYKK---FAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLES---LNTNEKIDKKPLRFPVQLV 556 (967)
Q Consensus 483 ~~~~i~~~~~~---~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~---~~~~~~~~~~~~~~~i~~v 556 (967)
+ +..++.. +.+.++ .+++++++||++|.|++++ ++.+.. +.......+.|+..++.++
T Consensus 122 ~---v~~~l~~~~~~~~~~~-~~~~~v~vSAktG~gI~eL------------le~I~~~~~~~~~~~~~~~~~~~~V~e~ 185 (501)
T 1zo1_I 122 R---VKNELSQYGILPEEWG-GESQFVHVSAKAGTGIDEL------------LDAILLQAEVLELKAVRKGMASGAVIES 185 (501)
T ss_dssp C---TTCCCCCCCCCTTCCS-SSCEEEECCTTTCTTCTTH------------HHHTTTTCCCSTTTSCCCSBCEEEEEEE
T ss_pred H---HHHHHHHhhhhHHHhC-CCccEEEEeeeeccCcchh------------hhhhhhhhhhhccccccccccccceEEE
Confidence 1 1111100 011111 1368999999999999984 444432 1222333467889999999
Q ss_pred ecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeC-ccccceeecCCeEEEEEccccCCCCCcccccCC
Q psy3751 557 ARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQML-NKSLDMAITGQSVTLIIKEYLDISRGNMLVSPF 635 (967)
Q Consensus 557 ~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~-~~~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~ 635 (967)
+...+.| ++++|+|.+|++++||.|.+.+. ..+|++|+.. +.++++|.||++|.+.... .....|++++...
T Consensus 186 ~~d~g~G----~v~~~~V~~Gtlk~Gd~v~~g~~--~~kVr~i~~~~g~~v~~a~~g~~V~i~gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 186 FLDKGRG----PVATVLVREGTLHKGDIVLCGFE--YGRVRAMRNELGQEVLEAGPSIPVEILGLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp EECSSSS----EEEEEEEEESBCCTTCEEEEEBS--SCEEEEECCTTTTSEEEECCSSCSSSEEEC-SCCCTTEEEEEEC
T ss_pred EEeCCcE----EEEEEEEEeeEEecCCEEEEccc--eeEEEEEEecCCCcCcEeccCCcEEEeCCC-CCCCCCCEEEecC
Confidence 9888877 89999999999999999998764 4799999864 5689999999999876433 2257899988653
No 52
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.96 E-value=4.2e-29 Score=258.33 Aligned_cols=166 Identities=23% Similarity=0.342 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHcCC-CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecc
Q psy3751 25 EAIHIMREVSAECN-NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVE 103 (967)
Q Consensus 25 ~a~~~i~~~~~~~~-~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~ 103 (967)
.+.++|+++++.++ +++|+|||||||+||||++.++ ..++.++|+|||.++|++++++++++++||++++++.+.
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~----~~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~~ 106 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQI----RPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRAT 106 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHH----STTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHh----CCCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 78889999999985 8999999999999999999998 357999999999999999999999999999999999876
Q ss_pred hhhhhcccccC----C--CC-cccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcc
Q psy3751 104 DSIMKGTVRLR----K--PN-TDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPE 176 (967)
Q Consensus 104 ~~~~~~~~~~~----~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~ 176 (967)
..+.......+ . .. +.+|..+|+.++.+.+++++.++|++|+|+||+..|..++.++..
T Consensus 107 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~~r~~~~~~~~~-------------- 172 (215)
T 1sur_A 107 ESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQ-------------- 172 (215)
T ss_dssp SCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSSTTTTCCSEEEE--------------
T ss_pred CCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhhhhcCCCccccC--------------
Confidence 54221111111 0 01 223444677788889998888899999999999888877655311
Q ss_pred ccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 177 LWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 177 ~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
++..+++||++|+++|||.|++.+++|+||||
T Consensus 173 -----------~~~~~i~PLl~~t~~dI~~y~~~~~lp~~~lY 204 (215)
T 1sur_A 173 -----------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLW 204 (215)
T ss_dssp -----------TTEEEECTTTTCCHHHHHHHHHHHTCCCCGGG
T ss_pred -----------CCEEEEechHhCCHHHHHHHHHHhCCCCChHH
Confidence 12468999999999999999999999999999
No 53
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.95 E-value=1.5e-27 Score=287.18 Aligned_cols=274 Identities=20% Similarity=0.179 Sum_probs=198.2
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+..+||+|+||+|||||||+++|+...+.+... +. --+-..++|+...|+++|+|+......+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~------------g~---v~~~~~~~d~~~~E~~~giTi~~~~~~~~ 73 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKI------------GE---VHEGAATMDFMEQERERGITITAAVTTCF 73 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-------------------------------------------CCEEEEE
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCccc------------ce---ecCCceeccCchhhhhcccccccceEEEE
Confidence 3567899999999999999999999755543111 00 00113457899999999999999988888
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
+.+..++|||||||.+|...+.++++.+|++|+|||+++ +...++...+..+...+++ +++|+||+|+...+
T Consensus 74 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~-------g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~ 145 (691)
T 1dar_A 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQ-------GVEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD 145 (691)
T ss_dssp ETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTT-------CSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC
T ss_pred ECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCC-------CcchhhHHHHHHHHHcCCC-EEEEEECCCcccCC
Confidence 889999999999999999999999999999999999999 8889999999888888888 78889999998654
Q ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Q psy3751 481 QIFYKRIVYAYKKFAED--------------------------------------------------------------- 497 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~--------------------------------------------------------------- 497 (967)
. .++.++++..+..
T Consensus 146 ~---~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e 222 (691)
T 1dar_A 146 L---WLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAAD 222 (691)
T ss_dssp H---HHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTT
T ss_pred H---HHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 2 2233333322210
Q ss_pred ------------cC----------------CccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCc------
Q psy3751 498 ------------IH----------------FQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEK------ 543 (967)
Q Consensus 498 ------------~~----------------~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~------ 543 (967)
.. ..-+|+++.||++|.|+..+ |..+.+.+|.|..
T Consensus 223 ~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-----------Ld~i~~~lPsP~~~~~~~~ 291 (691)
T 1dar_A 223 FDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLL-----------LDAVVDYLPSPLDIPPIKG 291 (691)
T ss_dssp TCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHH-----------HHHHHHHSCCTTTSCCEEE
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHH-----------HHHHHHhCCChhhcccccc
Confidence 00 00157899999999999873 3344455666643
Q ss_pred ------------CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccc
Q psy3751 544 ------------IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLD 607 (967)
Q Consensus 544 ------------~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~ 607 (967)
+.+.||.+.|.+++..++.| ++..|||.+|+|+.||.|+..+.+++.+|.+|...+ .+++
T Consensus 292 ~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G----~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 367 (691)
T 1dar_A 292 TTPEGEVVEIHPDPNGPLAALAFKIMADPYVG----RLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVE 367 (691)
T ss_dssp ECSSSCEEEECCCTTSCCEEEEEEEEEETTTE----EEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEES
T ss_pred cCCCccccccccCCCCCcEEEEEEEEEcCCCC----cEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcc
Confidence 24679999999999888777 889999999999999999999888888999887654 3689
Q ss_pred eeecCCeEEEEEccccCCCCCcccccCCCC
Q psy3751 608 MAITGQSVTLIIKEYLDISRGNMLVSPFKR 637 (967)
Q Consensus 608 ~a~~G~~v~l~l~~~~~i~~G~vl~~~~~~ 637 (967)
+|.||++|++.. ..++..||+|++.+.+
T Consensus 368 ~~~aGdI~~i~g--l~~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 368 ELKAGDLGAVVG--LKETITGDTLVGEDAP 395 (691)
T ss_dssp EEETTCEEEEEC--CSSCCTTCEEEETTCC
T ss_pred eecCCCEEEEeC--cccCccCCEEecCCCc
Confidence 999999999984 3457789999986543
No 54
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=99.95 E-value=7.4e-28 Score=254.58 Aligned_cols=198 Identities=18% Similarity=0.209 Sum_probs=144.1
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEec-ccc--------hHHHhc-CCCceEEEecccccc-----------
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDA-LIT--------NELLML-CPKAKHIFVGKRFKK----------- 794 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~-~~~--------~~~~~~-~~~~~~~~~~~~~~~----------- 794 (967)
||.+|+||+|||+|++||+||+++|++||+|+++. ++. ..++.. .+....+..+.....
T Consensus 2 mg~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 81 (251)
T 2npn_A 2 MRTIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAVTDPERDRNPDNYEEEVR 81 (251)
T ss_dssp CEEEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHHHHHHHHHHHHHSTTCCEEEECC----------CHHHH
T ss_pred CcEEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhhhhhHHHHHHHHhCCCEEEEecCCCcccchhhhhhhhh
Confidence 57899999999999999999999999999999953 332 234443 233444444321000
Q ss_pred --cchhHHHHHHHHHHHHhcCCeEEEEEcCCCCCCCchHHHHHHHHHCC---CcEEEEcCchHHHHHHHhcCCccccCce
Q psy3751 795 --HSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYN---IKVKVIPGITAALAAASESKQSLTKRNI 869 (967)
Q Consensus 795 --~~~~~~~~~~~~~~~~~~g~~Vv~l~~GDP~~~~~~~~l~~~l~~~~---i~v~viPGiss~~aa~a~~g~~l~~~~~ 869 (967)
+...++.+.+.+.+.+++|++||+|++|||+||+++.++++++.+.| ++++|||||||+++|+|++|+||++...
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~g~~Vv~l~~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~~~ 161 (251)
T 2npn_A 82 RWHAERAHLLASTIRERTPDDGAVAFLVWGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIGE 161 (251)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEESBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCTTC
T ss_pred hhhhhHHHHHHHHHHHHHHCCCeEEEEeCCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCCCC
Confidence 01112233345667778899999999999999999999999999987 9999999999999999999999987443
Q ss_pred eeEEEeecccccccccccccCCCCCcEEEEecc-ccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHh
Q psy3751 870 SRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGG-NNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKK 947 (967)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~~~t~vl~~~~-~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~ 947 (967)
... +++++.. +. .+....+|+|+|+.+ +.+.+++ ++++++++++++|+++|++++++++++.+.
T Consensus 162 ~~~--~~~g~~l--~~--~l~~~~~t~vvl~~~~~~~~~l~--------~~~~~v~v~~~l~~~~E~i~~~~l~el~~~ 226 (251)
T 2npn_A 162 AIH--ITTGRNL--PE--TSAKDRRNCVVMLDGKTAWQDVA--------TEHTYMWWGAFLGTEQQVLRKGYVHEIGAQ 226 (251)
T ss_dssp CCE--EEETTTG--GG--SCTTGGGEEEEESCSSCTHHHHC--------CTTEEEEEEESTTSTTCEEEEEEHHHHHHH
T ss_pred eEE--EEccchh--hH--HHHhcCCcEEEEEcchhhHHHhc--------CCCCEEEEEEECCCCCeEEEEcCHHHHHHH
Confidence 333 3344421 11 222346788876654 4454442 357899999999999999999999999754
No 55
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9e-29 Score=267.13 Aligned_cols=184 Identities=22% Similarity=0.308 Sum_probs=137.1
Q ss_pred HHHHHHHHHH----H-HHHHHHHcCC----CcEEEEecChhHHHHHHHHHHhcCC------------------CCCCeeE
Q psy3751 18 YLDWLESEAI----H-IMREVSAECN----NPVLLFSGGKDSVVLLRLAEKAFRP------------------SRFPFPM 70 (967)
Q Consensus 18 ~l~~~~~~a~----~-~i~~~~~~~~----~i~va~SGGKDS~vlL~l~~~~~~~------------------~~~~i~~ 70 (967)
+|...+++++ + +|+++++.++ +++|+|||||||+|||||+.+++.+ .+.++++
T Consensus 25 ~l~~~~~e~i~~~~~~il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~v 104 (306)
T 2wsi_A 25 QIIASTQEAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPT 104 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeE
Confidence 4454444444 4 5555677665 6899999999999999999987421 1357999
Q ss_pred EEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcccccCCCCcccchhhcHHHHHHHHHH-cCCcEEEEeccchh
Q psy3751 71 VHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKE-FKFDACIGGARRDE 149 (967)
Q Consensus 71 v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~R~de 149 (967)
+|+|||.+||++++|+++++++||++++++.++..... .+ ...+.+.++. -+.+++++|+|++|
T Consensus 105 v~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~~~~~~--------------~l-~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 105 VFIDQEETFPTLENFVLETSERYCLSLYESQRQSGASV--------------NM-ADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-----C--------------CH-HHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccccc--------------cH-HHHHHHHHhhCCCCcEEEEEEeccc
Confidence 99999999999999999999999999998876532110 00 1122233444 36689999999999
Q ss_pred hHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCccccccchhhhc
Q psy3751 150 EKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKR 229 (967)
Q Consensus 150 s~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY~~~~~~~~~~ 229 (967)
+..|+...+ ...+. . | ...++++||++|+++|||.|++.++||||+||
T Consensus 170 s~~r~l~~~-~~~d~--~----------~---------p~~~ri~PL~dWt~~DVw~Yi~~~~lpy~pLY---------- 217 (306)
T 2wsi_A 170 PFGEALKPI-QRTDS--N----------W---------PDFMRLQPLLHWDLTNIWSFLLYSNEPICGLY---------- 217 (306)
T ss_dssp SSCCCCCSE-EECCT--T----------S---------CSCEEECTTTTCCHHHHHHHHHHHCCCBCHHH----------
T ss_pred ccccccCce-eccCC--C----------C---------CCcEEEeChHHCCHHHHHHHHHHcCCCCChhH----------
Confidence 988755432 22111 1 1 12489999999999999999999999999999
Q ss_pred CCEeecccCCCCCCCCccceeeeEEEeccccccccccccCC
Q psy3751 230 KGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSN 270 (967)
Q Consensus 230 ~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~ 270 (967)
..+|.|+||++||.|+..-
T Consensus 218 ----------------------d~GY~SiGc~~cT~pnp~l 236 (306)
T 2wsi_A 218 ----------------------GKGFTSIGGINNSLPNPHL 236 (306)
T ss_dssp ----------------------HTTCSSCCCTTTBCSCGGG
T ss_pred ----------------------hcCCCcCCcccCCCcCHHH
Confidence 6789999999999988763
No 56
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=1.8e-27 Score=286.54 Aligned_cols=274 Identities=19% Similarity=0.177 Sum_probs=198.9
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..+..++|+|+||+|||||||+++|++..+.+.... ..-+-...+|+...|+++|+|+......+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g---------------~v~~~~~~~D~~~~e~~~giTi~~~~~~~ 70 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIG---------------ETHEGASQMDWMEQEQDRGITITSAATTA 70 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC----------------------------------------CCSEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccc---------------cccCCceecccchhhhhcCceEeeeeEEE
Confidence 345689999999999999999999997555432110 00011345788899999999999998888
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
.+++..++|||||||.+|...+.++++.+|++|+|+|+++ +...++...+..+...+++ +|+|+||+|+...
T Consensus 71 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~-------g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~ 142 (693)
T 2xex_A 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQS-------GVEPQTETVWRQATTYGVP-RIVFVNKMDKLGA 142 (693)
T ss_dssp EETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTT-------BSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTC
T ss_pred EECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCC-------CCcHHHHHHHHHHHHcCCC-EEEEEECCCcccc
Confidence 8889999999999999999999999999999999999999 8889999999888888887 8889999999865
Q ss_pred CHHHHHHHHHHHHHHHHHc--------------------------------C----------------------------
Q psy3751 480 NQIFYKRIVYAYKKFAEDI--------------------------------H---------------------------- 499 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~--------------------------------~---------------------------- 499 (967)
+. .++.++++..+... +
T Consensus 143 ~~---~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~ 219 (693)
T 2xex_A 143 NF---EYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVA 219 (693)
T ss_dssp CH---HHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred ch---HHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 42 23333333332110 0
Q ss_pred -------------------------------CccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCc-----
Q psy3751 500 -------------------------------FQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEK----- 543 (967)
Q Consensus 500 -------------------------------~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~----- 543 (967)
..-+|+++.||++|.|+..+ |..+.+.+|.|..
T Consensus 220 e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~L-----------Ld~i~~~lPsP~~~~~~~ 288 (693)
T 2xex_A 220 ETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLM-----------LDAVIDYLPSPLDVKPII 288 (693)
T ss_dssp TTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-----------HHHHHHHSCCGGGSCCEE
T ss_pred hCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHH-----------HHHHHHHCCCchhccccc
Confidence 00147888899988888773 3334455666643
Q ss_pred ---------------CCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----c
Q psy3751 544 ---------------IDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----K 604 (967)
Q Consensus 544 ---------------~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~ 604 (967)
+.+.||.+.|.+++..++.| ++..|||.+|+|+.||+|+....+++.+|.+|...+ .
T Consensus 289 ~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g----~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~ 364 (693)
T 2xex_A 289 GHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVG----KLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQ 364 (693)
T ss_dssp EEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTE----EEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEE
T ss_pred ccCCCccccceeecCCCCCceEEEEEEeeecCCCc----eEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCce
Confidence 24679999999999888777 889999999999999999998888889999987654 3
Q ss_pred ccceeecCCeEEEEEccccCCCCCcccccCCC
Q psy3751 605 SLDMAITGQSVTLIIKEYLDISRGNMLVSPFK 636 (967)
Q Consensus 605 ~v~~a~~G~~v~l~l~~~~~i~~G~vl~~~~~ 636 (967)
++++|.|||++++.. ..+++.||+|++.+.
T Consensus 365 ~v~~~~aGdI~~i~g--l~~~~~GdTl~~~~~ 394 (693)
T 2xex_A 365 EIDTVYSGDIAAAVG--LKDTGTGDTLCGEKN 394 (693)
T ss_dssp ECSEEETTCEEEEES--CSSCCTTCEEEETTC
T ss_pred EccccCcCCEEEEeC--cccCccCCEEecCCC
Confidence 689999999999984 345788999998643
No 57
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.95 E-value=7.2e-27 Score=280.39 Aligned_cols=268 Identities=17% Similarity=0.134 Sum_probs=211.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
....+|+|+||+|||||||+++|++..+.+.. .| .-.+-..++|....|+++|+|+......+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~------------~G---~V~~g~~~~d~~~~e~~~giti~~~~~~~~~ 71 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKER------------RG---RVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF 71 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSS------------CC---CGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCc------------cc---eecCCcccccCCHHHHhcCCeEEecceEEee
Confidence 46789999999999999999999975543311 01 1112245678889999999999888888888
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
.+..++|+|||||.+|...+.++++.+|++++|+|+.+ +...|+++++..+...+++ +|+|+||+|+. ...
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~-------g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~~ 142 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA-------GVQVGTERAWTVAERLGLP-RMVVVTKLDKG-GDY 142 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT-------CSCHHHHHHHHHHHHTTCC-EEEEEECGGGC-CCH
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCc-------ccchhHHHHHHHHHHccCC-EEEEecCCchh-hhH
Confidence 88999999999999999999999999999999999998 8999999999999988988 77889999997 432
Q ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Q psy3751 482 IFYKRIVYAYKKFAE----------------------------------------------------------------- 496 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~----------------------------------------------------------------- 496 (967)
.++.+++...+.
T Consensus 143 ---~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l 219 (665)
T 2dy1_A 143 ---YALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGL 219 (665)
T ss_dssp ---HHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---HHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 233333333221
Q ss_pred ------HcCC----------------ccceEEeccccCCCcccccccCCCCCCCCcHHHHh-hcccCCCcC-CCCCceee
Q psy3751 497 ------DIHF----------------QNINTIPISALNGDNIISASNNMLWYNGPTLISLL-ESLNTNEKI-DKKPLRFP 552 (967)
Q Consensus 497 ------~~~~----------------~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l-~~~~~~~~~-~~~~~~~~ 552 (967)
...+ .-+|++++||++|.|+.. |++.+ +.+|.|... .+.||.+.
T Consensus 220 ~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~------------Ll~~i~~~lp~p~~~~~~~p~~~~ 287 (665)
T 2dy1_A 220 LEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLP------------LLELILEALPSPTERFGDGPPLAK 287 (665)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHH------------HHHHHHHHSCCHHHHHCSCSCEEE
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHH------------HHHHHHHhCCCccccCCCCCeEEE
Confidence 0000 115899999999999988 45444 556666543 57899999
Q ss_pred EEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEeCc----cccceeecCCeEEEEEccccCCCCC
Q psy3751 553 VQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN----KSLDMAITGQSVTLIIKEYLDISRG 628 (967)
Q Consensus 553 i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~~~~V~~i~~~~----~~v~~a~~G~~v~l~l~~~~~i~~G 628 (967)
|.+++..++.| ++..|||.+|+|+.||.|++.+ ++.+|++|...+ .++++|.||++|++... .++++|
T Consensus 288 V~k~~~d~~~G----~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl--~~~~~G 359 (665)
T 2dy1_A 288 VFKVQVDPFMG----QVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKA--EGLHRG 359 (665)
T ss_dssp EEEEEEETTTE----EEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSC--TTCCTT
T ss_pred EEEEEEcCCCC----eEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCC--ccCccC
Confidence 99999887777 8899999999999999999877 668898887643 37999999999999743 357899
Q ss_pred cccccCCC
Q psy3751 629 NMLVSPFK 636 (967)
Q Consensus 629 ~vl~~~~~ 636 (967)
|+|++.+.
T Consensus 360 dtl~~~~~ 367 (665)
T 2dy1_A 360 MVLWQGEK 367 (665)
T ss_dssp CEEESSSC
T ss_pred CEEecCCC
Confidence 99998654
No 58
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.94 E-value=4.8e-27 Score=275.96 Aligned_cols=256 Identities=23% Similarity=0.303 Sum_probs=184.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee--
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN-- 400 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-- 400 (967)
..++|+++||+|||||||+++|++... .+. ..+|+|.+++...+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v-----------------------------~~~----e~ggiT~~ig~~~~~~~ 50 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV-----------------------------ASR----EAGGITQHIGATEIPMD 50 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH-----------------------------SCC--------CCCBTTEEEEEHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC-----------------------------ccc----cCCceecccCeEEEeec
Confidence 356899999999999999999986110 000 002344333322221
Q ss_pred ----------------cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCC
Q psy3751 401 ----------------TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI 464 (967)
Q Consensus 401 ----------------~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~ 464 (967)
.....++|||||||++|...+.++++.+|++|||+|+++ |+++||.+++..+...++
T Consensus 51 ~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~-------Gv~~qT~e~l~~l~~~~v 123 (594)
T 1g7s_A 51 VIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE-------GFKPQTQEALNILRMYRT 123 (594)
T ss_dssp HHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT-------CCCHHHHHHHHHHHHTTC
T ss_pred hhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC-------CccHhHHHHHHHHHHcCC
Confidence 122359999999999999888888999999999999999 999999999999999998
Q ss_pred CeEEEEEecCCccC-cC---------------H---HHHHHHHHHHHHHHHHcCC------------ccceEEeccccCC
Q psy3751 465 KHIIIAVNKMDLIN-YN---------------Q---IFYKRIVYAYKKFAEDIHF------------QNINTIPISALNG 513 (967)
Q Consensus 465 ~~iivviNK~D~~~-~~---------------~---~~~~~i~~~~~~~~~~~~~------------~~~~ii~iSa~~g 513 (967)
| +|+|+||||+.+ +. + ..+.+...++...+...++ ..++++++||++|
T Consensus 124 P-iIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 124 P-FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp C-EEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred e-EEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 8 899999999974 21 1 2233333334444444343 2458999999999
Q ss_pred CcccccccCCCCCCCCcHHHHhhc-ccC-----CCcCCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEE
Q psy3751 514 DNIISASNNMLWYNGPTLISLLES-LNT-----NEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIV 587 (967)
Q Consensus 514 ~gi~~l~~~~~w~~~~~L~~~l~~-~~~-----~~~~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i 587 (967)
.|++++ ++.+.. ++. .....+.|++++|.+++...+.| ++++|+|.+|+|++||.|.+
T Consensus 203 ~GI~eL------------l~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G----~v~~~rV~~G~Lk~Gd~v~~ 266 (594)
T 1g7s_A 203 EGIPEL------------LTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLG----MTIDAVIYDGILRKDDTIAM 266 (594)
T ss_dssp TTHHHH------------HHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEE----EEEEEEEEESEEETTCEEEE
T ss_pred CCchhH------------HHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcE----EEEEEEEeeCEEeeCCEEEE
Confidence 999985 333322 111 11234689999999999988877 89999999999999999999
Q ss_pred ecCCc--EEEEEEEEeC------------ccccceee--cCCeEEEEEccccCCCCCcccccCCCC
Q psy3751 588 EPSGK--KATIKDIQML------------NKSLDMAI--TGQSVTLIIKEYLDISRGNMLVSPFKR 637 (967)
Q Consensus 588 ~p~~~--~~~V~~i~~~------------~~~v~~a~--~G~~v~l~l~~~~~i~~G~vl~~~~~~ 637 (967)
.+.+. .++|++|... ..++++|. +|+.|++ .+..++..||.|+..+++
T Consensus 267 ~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~~l~~~~~Gd~l~~~~~~ 330 (594)
T 1g7s_A 267 MTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA--PGIDDVMAGSPLRVVTDP 330 (594)
T ss_dssp EBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC--SSCTTBCTTCEEEECSSH
T ss_pred CCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE--cccCCCCCCCEEEecCCH
Confidence 99876 4589999754 23678888 5655554 343456889999886443
No 59
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.93 E-value=8.6e-27 Score=240.57 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=133.7
Q ss_pred ceEEEEEecCCCCcccccHHHHhccccccEEEEecccchHHHhcCCCceEEEecccccccchhHHHHHHHHHHHHhcCCe
Q psy3751 736 VAAVYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNL 815 (967)
Q Consensus 736 ~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 815 (967)
.|++++||+||| |++||+||+++|++||+|+++++..+.+..+.+.... .. ....++.+. .+. .+.+|++
T Consensus 21 ~g~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~~~~~l~~~~~~~~~~~~-~~------~~~~~~~~~-~i~-~~~~g~~ 90 (221)
T 2bb3_A 21 GHMIWIVGSGTC-RGQTTERAKEIIERAEVIYGSRRALELAGVVDDSRAR-IL------RSFKGDEIR-RIM-EEGRERE 90 (221)
T ss_dssp CSEEEEEECBSS-TTCCCHHHHHHHHHCSEEEECHHHHHHTTCTTCTTEE-EC------SCCSHHHHH-HHH-HHHHHSC
T ss_pred CCEEEEEEeCCC-hhHhHHHHHHHHHhCCEEEECHHHHHHhhhhcCCceE-ec------cchHHHHHH-HHH-HhcCCCc
Confidence 468999999999 9999999999999999999987754433332222221 11 112233333 343 5667899
Q ss_pred EEEEEcCCCCCCCchHHHHHHHHHCCCcEEEEcCchHHHHHHHhcCCccccCceeeEEEeecccccccc-cccccCCCCC
Q psy3751 816 VVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKN-NYLKNIPISD 894 (967)
Q Consensus 816 Vv~l~~GDP~~~~~~~~l~~~l~~~~i~v~viPGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 894 (967)
||+|++|||+||+.+..+. ++ ..+++++++|||||+++|+|++|+||++ +.+++.|++... .+..+....
T Consensus 91 Vv~L~~GDP~i~~~~~~l~-~~-~~~i~veviPGiSS~~aa~a~~g~pl~~------~~~vs~~~r~~~~~l~~l~~~~- 161 (221)
T 2bb3_A 91 VAVISTGDPMVAGLGRVLR-EI-AEDVEIKIEPAISSVQVALARLKVDLSE------VAVVDCHAKDFDAELTELLKYR- 161 (221)
T ss_dssp EEEEESBCTTTTTSHHHHH-TS-CCSSEEEEECCCCHHHHHHHHHTCCGGG------EEEEEC----CCHHHHTHHHHC-
T ss_pred EEEEeCCCCccccCHHHHH-Hh-cCCCCEEEECCHHHHHHHHHHhCCCcee------EEEEeecCCCchHHHHHHhcCC-
Confidence 9999999999999766654 44 3589999999999999999999999974 555666643322 233333333
Q ss_pred cEEEEec-cccHHHHHHHHHhcCCCCCCcEEEEEecCCCCeEEEEEehhhHHHhhccCCCcEEEEEcC
Q psy3751 895 TLVEYMG-GNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGK 961 (967)
Q Consensus 895 t~vl~~~-~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~vi~vg~ 961 (967)
++++++. ...+.++++ +++++++++|+++|++++++++++ . . ..+..+++++++
T Consensus 162 ~~vvl~~~~~~~~~l~~----------~~v~v~~~lg~~~E~i~~~~l~el-~-~-~~~~~slii~~~ 216 (221)
T 2bb3_A 162 HLLILADSHFPLERLGK----------RRVVLLENLCMEGERIREGNADSI-E-L-ESDYTIIFVERE 216 (221)
T ss_dssp EEEEEECTTCCCGGGTT----------CEEEEEESTTSTTCEEEEEETTTC-C-C-CCSSEEEEECCC
T ss_pred eEEEEECCCCCHHHHhC----------CeeehhhhcCCCCcEEEEccHHHH-h-h-cCCCEEEEEEcC
Confidence 5555554 443433322 789999999999999999999999 3 1 234555655544
No 60
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.91 E-value=3.9e-24 Score=262.59 Aligned_cols=285 Identities=20% Similarity=0.232 Sum_probs=190.4
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....+||+|+||+|||||||+++|++..+.+.... .+ ....+|....|+++|+|+......+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~~-------~~~~~D~~~~E~~rgiTI~~~~~~~~ 78 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK----------AG-------EARFTDTRKDEQERGITIKSTAISLY 78 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------------------CCCBCCCEEEEE
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CC-------CceeecCchhhhhcceeEeeceeEEE
Confidence 34678999999999999999999998766553221 01 12347888999999999987766554
Q ss_pred cC----------------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCC
Q psy3751 401 TP----------------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI 464 (967)
Q Consensus 401 ~~----------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~ 464 (967)
+. +..++|||||||.+|...+.++++.+|++|+|||+++ +...|+..++..+...++
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~-------g~~~qt~~~~~~~~~~~~ 151 (842)
T 1n0u_A 79 SEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE-------GVCVQTETVLRQALGERI 151 (842)
T ss_dssp EECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT-------BSCHHHHHHHHHHHHTTC
T ss_pred ecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC-------CCCHHHHHHHHHHHHcCC
Confidence 43 5789999999999999999999999999999999999 888999988888877887
Q ss_pred CeEEEEEecCCccCc----C----HHHHHHHHHHHHHHHHHc-----C---Cc--cceEEeccccCCCccc---------
Q psy3751 465 KHIIIAVNKMDLINY----N----QIFYKRIVYAYKKFAEDI-----H---FQ--NINTIPISALNGDNII--------- 517 (967)
Q Consensus 465 ~~iivviNK~D~~~~----~----~~~~~~i~~~~~~~~~~~-----~---~~--~~~ii~iSa~~g~gi~--------- 517 (967)
+ +|+|+||+|+... + ...+..+.++++..+..+ + +. ..++...|+++|+++.
T Consensus 152 p-~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~ 230 (842)
T 1n0u_A 152 K-PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYA 230 (842)
T ss_dssp E-EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHH
T ss_pred C-eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcc
Confidence 7 7889999998732 1 223455556665555431 1 22 2357778998886632
Q ss_pred -ccc------cCCCC---C-C----------------------------------------------------C------
Q psy3751 518 -SAS------NNMLW---Y-N----------------------------------------------------G------ 528 (967)
Q Consensus 518 -~l~------~~~~w---~-~----------------------------------------------------~------ 528 (967)
.+. ....| | . |
T Consensus 231 ~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~ 310 (842)
T 1n0u_A 231 KKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGD 310 (842)
T ss_dssp TTTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGG
T ss_pred hhcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHH
Confidence 000 00012 0 0 0
Q ss_pred ---------------------CcHHHHh-hcccCCC-------------------------cCCCCCceeeEEEeecCCC
Q psy3751 529 ---------------------PTLISLL-ESLNTNE-------------------------KIDKKPLRFPVQLVARHCG 561 (967)
Q Consensus 529 ---------------------~~L~~~l-~~~~~~~-------------------------~~~~~~~~~~i~~v~~~~~ 561 (967)
..|++.+ +.+|.|. .+.+.||...|.++...+.
T Consensus 311 e~~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~ 390 (842)
T 1n0u_A 311 EKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSD 390 (842)
T ss_dssp GGGCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSS
T ss_pred HHhhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCC
Confidence 1112211 2344442 1346789999988887666
Q ss_pred ccCCCce-EEEEEEEeeeecCCCEEEEecCC------c---EEEEEEEEeCcc----ccceeecCCeEEEEEccccCCCC
Q psy3751 562 HISKDFR-GYMGRIESGIIKKNDCLIVEPSG------K---KATIKDIQMLNK----SLDMAITGQSVTLIIKEYLDISR 627 (967)
Q Consensus 562 ~~~~~~~-v~~G~v~~G~l~~g~~v~i~p~~------~---~~~V~~i~~~~~----~v~~a~~G~~v~l~l~~~~~i~~ 627 (967)
.| + +..+||.||+|+.||.|.+...+ . +.+|.+|...++ ++++|.||++|++...+...++.
T Consensus 391 ~G----~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t 466 (842)
T 1n0u_A 391 KG----RFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKT 466 (842)
T ss_dssp TT----CEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSS
T ss_pred CC----ceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecc
Confidence 55 5 78999999999999999876332 3 578888876643 68999999999998654333344
Q ss_pred CcccccCC
Q psy3751 628 GNMLVSPF 635 (967)
Q Consensus 628 G~vl~~~~ 635 (967)
| +|++.+
T Consensus 467 ~-Tl~~~~ 473 (842)
T 1n0u_A 467 G-TLTTSE 473 (842)
T ss_dssp E-EEESCT
T ss_pred e-eecCCC
Confidence 5 888753
No 61
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=2.5e-19 Score=205.65 Aligned_cols=158 Identities=22% Similarity=0.324 Sum_probs=115.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+|+|++.... ..+...|+|.+.....+..
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~--------------------------------~~~~~~gtT~d~~~~~~~~ 220 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERV--------------------------------IVSNVAGTTRDAVDTSFTY 220 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE--------------------------------EEC---------CCEEEEE
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCce--------------------------------eecCCCCceeeeeEEEEEE
Confidence 45689999999999999999999973211 1123457788877777888
Q ss_pred CCceEEEeeChhh----------HHHHHH-HHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEE
Q psy3751 402 PKRKFIIADTPGH----------EQYTRN-MITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIA 470 (967)
Q Consensus 402 ~~~~~~liDtpG~----------~~~~~~-~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivv 470 (967)
++..+.||||||+ +.|... ++.++..+|++|+|+|+++ +...|..+++..+...+.+ +|+|
T Consensus 221 ~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~-------~~s~~~~~~~~~~~~~~~~-iiiv 292 (436)
T 2hjg_A 221 NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE-------GIIEQDKRIAGYAHEAGKA-VVIV 292 (436)
T ss_dssp TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-------CCCHHHHHHHHHHHHTTCE-EEEE
T ss_pred CCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc-------CCcHHHHHHHHHHHHcCCc-EEEE
Confidence 8889999999998 555433 4467889999999999999 7777888877777777765 9999
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
+||+|+.+.++...+++.+++...+.... ..+++++||++|.|++++.+
T Consensus 293 ~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 293 VNKWDAVDKDESTMKEFEENIRDHFQFLD--YAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp EECGGGSCCCTTHHHHHHHHHHHHCGGGT--TSCEEECCTTTCTTGGGHHH
T ss_pred EECccCCCcchHHHHHHHHHHHHhcccCC--CCCEEEEecccCCCHHHHHH
Confidence 99999987655444555555555544433 35899999999999998753
No 62
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.78 E-value=5.5e-19 Score=162.34 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=88.8
Q ss_pred ccceEEEEEecCCCCcccccHHHHhccccccEEEEec-ccchHHHhcCC-C-ceEEEecccccccchhHHHHHHHHHHHH
Q psy3751 734 QTVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDA-LITNELLMLCP-K-AKHIFVGKRFKKHSIAQYIINRIIVKCA 810 (967)
Q Consensus 734 ~~~~~~~~vg~g~g~~~~lT~~a~~~l~~ad~v~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (967)
..+|.+|+||+|||+|++||+||+++|++||+|+++. +....++..+. . ...+... ...+.+..+.+++.+
T Consensus 3 ~~~g~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~ 76 (117)
T 3hh1_A 3 AHKGTLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSYH------SFNEERAVRQVIELL 76 (117)
T ss_dssp CCCCCEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHHHHHHHHHTTCCSCCEEECC------STTHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCchHHHHHHHhCCCCCEEeccC------CccHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999954 45456665542 2 2333222 223455567788899
Q ss_pred hcCCeEEEEE-cCCCCCCCchHHHHHHHHHCCCcEEEEcCc
Q psy3751 811 FKYNLVVRLK-GGDPMLFGRTDEELNALKKYNIKVKVIPGI 850 (967)
Q Consensus 811 ~~g~~Vv~l~-~GDP~~~~~~~~l~~~l~~~~i~v~viPGi 850 (967)
++|++|++++ +|||++|+++.++++++.+.|++++++||+
T Consensus 77 ~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 77 EEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp HTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred HCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 9999999999 899999999999999999999999999995
No 63
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=8.8e-19 Score=202.28 Aligned_cols=249 Identities=15% Similarity=0.173 Sum_probs=152.3
Q ss_pred hhcCCEeecccCCCCCCCCccceeeeEEEeccccccccccccCCcCChHHHHHhhhhhhhhhhcccccccccchhh-HHh
Q psy3751 227 IKRKGLLIPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGATRIDDQNSEAS-MEK 305 (967)
Q Consensus 227 ~~~~~~l~~v~~~~~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~~~~~~~~~~~~-~~~ 305 (967)
...++.+++++...+..+.+.......+....+++.+.++.+.... +....+.......+.............. .+.
T Consensus 101 ~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~--~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~ 178 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM--RANIYDFYSLGFGEPYPISGTHGLGLGDLLDA 178 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHHHHHH
T ss_pred hhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhh--hhhHHHHHHcCCCceEEeecccccchHHHHHH
Confidence 4456677777776666666655555555455666666666654321 1111121111111110000000000000 111
Q ss_pred hhcccCcccccccccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhh
Q psy3751 306 RKKTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESE 385 (967)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e 385 (967)
.... .+.. .........++|+++|++|+|||||+|+|++.... ..+
T Consensus 179 i~~~-l~~~-~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~--------------------------------~~~ 224 (456)
T 4dcu_A 179 VAEH-FKNI-PETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERV--------------------------------IVS 224 (456)
T ss_dssp HHTT-GGGS-CSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTE--------------------------------EEC
T ss_pred HHhh-cccc-cccccccccceeEEecCCCCCHHHHHHHHhCCCcc--------------------------------ccC
Confidence 1000 0000 01123356789999999999999999999962211 112
Q ss_pred hccceeEeeceeeeecCCceEEEeeChh----------hHHHHHH-HHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH
Q psy3751 386 REQGITIDVAYRYFNTPKRKFIIADTPG----------HEQYTRN-MITGASTADAVIILIDASKIKFNPSVNLLTQTKR 454 (967)
Q Consensus 386 ~~~g~Ti~~~~~~~~~~~~~~~liDtpG----------~~~~~~~-~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~ 454 (967)
...|+|.+.....++.++..++|||||| ++.|... ++.++..+|++|+|+|+++ ++..+..+
T Consensus 225 ~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-------~~~~~~~~ 297 (456)
T 4dcu_A 225 NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE-------GIIEQDKR 297 (456)
T ss_dssp C------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-------CCCHHHHH
T ss_pred CCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-------CcCHHHHH
Confidence 2347778777777888888999999999 5666543 4567899999999999999 88889988
Q ss_pred HHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 455 HSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 455 ~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
++..+...+.+ +|+|+||+|+.+.++...+++.+.++..+...+. ++++++||++|.|++++.+
T Consensus 298 ~~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 298 IAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY--APILFMSALTKKRIHTLMP 361 (456)
T ss_dssp HHHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTT--SCEEECCTTTCTTGGGHHH
T ss_pred HHHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCC--CCEEEEcCCCCcCHHHHHH
Confidence 88888888865 9999999999876655566666666666555443 5899999999999998654
No 64
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=4.6e-19 Score=177.48 Aligned_cols=156 Identities=25% Similarity=0.319 Sum_probs=110.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..++|+++|.+|+|||||+++|++.. + ......++|.+.....+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~------------------------~---------~~~~~~~~~~~~~~~~~~~ 52 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK------------------------V---------TEQEAGGITQHIGAYQVTV 52 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC------------------------S---------SCSSCCSSSTTCCCCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc------------------------c---------ccCCCCceeEeeeEEEEEe
Confidence 466899999999999999999998621 1 0111234455555556677
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCH
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~ 481 (967)
++..+.+|||||+++|.......+..+|++++|+|+++ +...+..+.+......++| +++|+||+|+.+.+.
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 53 NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD-------GVMPQTVEAINHAKAANVP-IIVAINKMDKPEANP 124 (178)
T ss_dssp TTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC-------CCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCH
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC-------CCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCCH
Confidence 78889999999999887777777889999999999988 6667777777666666766 899999999987543
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+...........+.+.++ ...+++++||++|.|++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l 161 (178)
T 2lkc_A 125 DRVMQELMEYNLVPEEWG-GDTIFCKLSAKTKEGLDHL 161 (178)
T ss_dssp HHHHHHHTTTTCCBTTTT-SSEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHhcCcChhHcC-CcccEEEEecCCCCCHHHH
Confidence 221111110000111111 1258999999999999985
No 65
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=99.74 E-value=5.6e-18 Score=185.16 Aligned_cols=183 Identities=13% Similarity=0.057 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHH--HHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCC-eeEEEeeCCCC--ChhhHHHHHHHHHHhC
Q psy3751 20 DWLESEAIHIMREV--SAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFP-FPMVHIDTGHN--FPEVISFRDNCISKLG 94 (967)
Q Consensus 20 ~~~~~~a~~~i~~~--~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~-i~~v~idtg~~--~pet~~~~~~~~~~~g 94 (967)
+...++..+.++.. +...++++|++|||+||+|+|+++.+.....+.+ +.++|+|+|.. .++..++++++|+++|
T Consensus 5 ~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lg 84 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERN 84 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcC
Confidence 34445555555543 5566889999999999999999999876555678 99999999985 3568899999999999
Q ss_pred CcEEEEecchhhhhcccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCC
Q psy3751 95 ETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQR 174 (967)
Q Consensus 95 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~ 174 (967)
+|+++...+...... ..+...+..|...|...+.+.++++|.+.+++||+.||..++..+++.++....+...
T Consensus 85 i~~~v~~~~~~~~~~--~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~~gl~~----- 157 (317)
T 1wy5_A 85 MKIFVGKEDVRAFAK--ENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLDGLIG----- 157 (317)
T ss_dssp CCEEEEECCHHHHHH--HTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCHHHHHC-----
T ss_pred CcEEEEEEechhhhc--cCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHHHHHHHHHHHhCCCcccccC-----
Confidence 999998775421110 1122223334446777888999999999999999999999987777766544211110
Q ss_pred ccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 175 PELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 175 p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
+.+.....++||++|+++||++|++.+|+|+....
T Consensus 158 ----------~~~~~~~iirPLl~~~k~eI~~~~~~~gl~~~~d~ 192 (317)
T 1wy5_A 158 ----------FLPKEEVIRRPLYYVKRSEIEEYAKFKGLRWVEDE 192 (317)
T ss_dssp ----------SCSEETTEECTTTTCCHHHHHHHHHHTTCCCCCCG
T ss_pred ----------CCCCCCeEECCCccCCHHHHHHHHHHcCCCeeECC
Confidence 00001157899999999999999999999998655
No 66
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.72 E-value=3.2e-17 Score=170.73 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=108.3
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|++|+|||||+|+|++..... ......|.|.+.....+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~ 74 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLA-------------------------------FASKTPGRTQHINYFSVG 74 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSS-------------------------------CTTCCCCSCCCEEEEEES
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcce-------------------------------eecCCCCcccceEEEEec
Confidence 3457899999999999999999998732100 011123455555544454
Q ss_pred -cCCceEEEeeChhh----------H---HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCe
Q psy3751 401 -TPKRKFIIADTPGH----------E---QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKH 466 (967)
Q Consensus 401 -~~~~~~~liDtpG~----------~---~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~ 466 (967)
.++..+.||||||+ + .+....+.....+|++++|+|+.+ +......+.+..+...+++
T Consensus 75 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~-------~~~~~~~~~~~~l~~~~~p- 146 (223)
T 4dhe_A 75 PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR-------PLTELDRRMIEWFAPTGKP- 146 (223)
T ss_dssp CTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-------CCCHHHHHHHHHHGGGCCC-
T ss_pred CCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC-------CCCHHHHHHHHHHHhcCCC-
Confidence 45678999999995 2 233444555566899999999998 6666666666666666766
Q ss_pred EEEEEecCCccCcCHHHHHHHHHHHHHHHHHc----CCccceEEeccccCCCccccc
Q psy3751 467 IIIAVNKMDLINYNQIFYKRIVYAYKKFAEDI----HFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 467 iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+|+||+|+.+. .......+.+.+.+..+ .....+++++||++|.|++++
T Consensus 147 ~i~v~nK~Dl~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l 201 (223)
T 4dhe_A 147 IHSLLTKCDKLTR--QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDA 201 (223)
T ss_dssp EEEEEECGGGSCH--HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHH
T ss_pred EEEEEeccccCCh--hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHH
Confidence 8999999999853 22233334444444432 012468999999999999984
No 67
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.71 E-value=3.8e-17 Score=178.24 Aligned_cols=155 Identities=23% Similarity=0.291 Sum_probs=109.2
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
...+.-.|+++|++|+|||||+|+|++..-.+ .....+.|.+.....+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i--------------------------------~s~~~~tT~~~~~~~~ 53 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI--------------------------------ISPKAGTTRMRVLGVK 53 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC--------------------------------CCSSSCCCCSCEEEEE
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccc--------------------------------cCCCCCceeeEEEEEE
Confidence 34566789999999999999999999732211 0112334444444445
Q ss_pred ecC-CceEEEeeChhh----------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHH-HHHHHHcCCCeE
Q psy3751 400 NTP-KRKFIIADTPGH----------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRH-SIIAHLLRIKHI 467 (967)
Q Consensus 400 ~~~-~~~~~liDtpG~----------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~-~~~~~~~~~~~i 467 (967)
..+ +.+++|+||||+ +.+...+...+..+|++++|+|+++ +...+.... +..+...++| +
T Consensus 54 ~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~-------~~~~~~~~~~~~~l~~~~~p-v 125 (308)
T 3iev_A 54 NIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE-------GWRPRDEEIYQNFIKPLNKP-V 125 (308)
T ss_dssp EETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTT-------BSCHHHHHHHHHHTGGGCCC-E
T ss_pred ecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCC-------CCCchhHHHHHHHHHhcCCC-E
Confidence 666 789999999997 3455677788899999999999998 666666666 5666666666 8
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+||+|+.+..+ . ....+..+.+.++ ...+++++||++|.|++++
T Consensus 126 ilV~NK~Dl~~~~~-~---~~~~~~~l~~~~~-~~~~i~~vSA~~g~gv~~L 172 (308)
T 3iev_A 126 IVVINKIDKIGPAK-N---VLPLIDEIHKKHP-ELTEIVPISALKGANLDEL 172 (308)
T ss_dssp EEEEECGGGSSSGG-G---GHHHHHHHHHHCT-TCCCEEECBTTTTBSHHHH
T ss_pred EEEEECccCCCCHH-H---HHHHHHHHHHhcc-CCCeEEEEeCCCCCCHHHH
Confidence 99999999983222 1 2223334444443 1247999999999999985
No 68
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.71 E-value=3.9e-17 Score=176.94 Aligned_cols=148 Identities=19% Similarity=0.250 Sum_probs=100.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+++|++|+|||||+|+|++....+. .+ ..+.|.+.....+..+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv--------------------------s~------~~~tTr~~i~~i~~~~ 53 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI--------------------------SP------RPQTTRKRLRGILTEG 53 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC--------------------------CS------SSCCCCSCEEEEEEET
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee--------------------------cC------CCCceeEEEEEEEEeC
Confidence 446799999999999999999997332210 00 0112222111224456
Q ss_pred CceEEEeeChhhHH--------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEe
Q psy3751 403 KRKFIIADTPGHEQ--------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVN 472 (967)
Q Consensus 403 ~~~~~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviN 472 (967)
+.+++|+||||+.+ |......+++.+|++++|+|+++ +...+....+..+... +.| +|+|+|
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~-------~~~~~~~~i~~~l~~~~~~~p-~ilV~N 125 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH-------PPTPEDELVARALKPLVGKVP-ILLVGN 125 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTS-------CCCHHHHHHHHHHGGGTTTSC-EEEEEE
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCC-------CCChHHHHHHHHHHhhcCCCC-EEEEEE
Confidence 78999999999654 66777788899999999999998 5555555555555555 555 899999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+.+.... +.+.++.+ .+ ..+++|+||++|.|++++
T Consensus 126 K~Dl~~~~~~----~~~~~~~~---~~--~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 126 KLDAAKYPEE----AMKAYHEL---LP--EAEPRMLSALDERQVAEL 163 (301)
T ss_dssp CGGGCSSHHH----HHHHHHHT---ST--TSEEEECCTTCHHHHHHH
T ss_pred CcccCCchHH----HHHHHHHh---cC--cCcEEEEeCCCCCCHHHH
Confidence 9999864221 22222222 22 247899999999999884
No 69
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.70 E-value=6.3e-17 Score=162.31 Aligned_cols=152 Identities=22% Similarity=0.213 Sum_probs=101.6
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|++|+|||||+++|++..- ..+....++.+.....+.
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 55 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQF---------------------------------VEFQESTIGAAFFSQTLA 55 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCC---------------------------------TTTSCCCSCCSEEEEEEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCC---------------------------------CCcCCCCceeEEEEEEEE
Confidence 34668999999999999999999987211 011112222222222233
Q ss_pred cC--CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHcC--CCeEEEEEecCC
Q psy3751 401 TP--KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLLR--IKHIIIAVNKMD 475 (967)
Q Consensus 401 ~~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~~--~~~iivviNK~D 475 (967)
.+ ...+.++||||+++|...+...++.+|++|+|+|+++ ... ....+.+..+.... ..++++|+||+|
T Consensus 56 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 128 (181)
T 2efe_B 56 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN-------QASFERAKKWVQELQAQGNPNMVMALAGNKSD 128 (181)
T ss_dssp ETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred ECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCc
Confidence 33 4578999999999988777778899999999999987 221 22333333333332 345999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+..+.. .++.+.+.+..++ +++++||++|.|++++
T Consensus 129 l~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 129 LLDARKVT----AEDAQTYAQENGL---FFMETSAKTATNVKEI 165 (181)
T ss_dssp CTTTCCSC----HHHHHHHHHHTTC---EEEECCSSSCTTHHHH
T ss_pred ccccccCC----HHHHHHHHHHcCC---EEEEEECCCCCCHHHH
Confidence 97543211 2234455556665 8999999999999984
No 70
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.70 E-value=4e-17 Score=163.29 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=100.7
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|++..- ..+....++.+.....+..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~ 50 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF---------------------------------GKQYKQTIGLDFFLRRITL 50 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT---------------------------------THHHHHTTTSSEEEEEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC---------------------------------CCCCCCceeEEEEEEEEEe
Confidence 4568999999999999999999987210 0011111222222333444
Q ss_pred CC---ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-----cCCCeEEEEEec
Q psy3751 402 PK---RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-----LRIKHIIIAVNK 473 (967)
Q Consensus 402 ~~---~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-----~~~~~iivviNK 473 (967)
++ ..+.++||||++.|...+...+..+|++|+|+|+++.. ........+..+.. .+.+++++|+||
T Consensus 51 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK 124 (178)
T 2hxs_A 51 PGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ------SFENLEDWYTVVKKVSEESETQPLVALVGNK 124 (178)
T ss_dssp TTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHH------HHHTHHHHHHHHHHHHHHHTCCCEEEEEEEC
T ss_pred CCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhcccCCCCeEEEEEEc
Confidence 43 67899999999988777777789999999999998721 11112222222222 256668999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+.+..+.. .++...+.+..++ +++++||++|.|++++
T Consensus 125 ~Dl~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 125 IDLEHMRTIK----PEKHLRFCQENGF---SSHFVSAKTGDSVFLC 163 (178)
T ss_dssp GGGGGGCSSC----HHHHHHHHHHHTC---EEEEECTTTCTTHHHH
T ss_pred cccccccccC----HHHHHHHHHHcCC---cEEEEeCCCCCCHHHH
Confidence 9997532211 1223445555565 8999999999999984
No 71
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=7.6e-17 Score=158.28 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=100.2
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
.||+++|.+|+|||||+++|++..... .+...++|.+.....+..++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV--------------------------------VADVPGVTRDLKEGVVETDRG 49 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------------------------------------CCEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee--------------------------------ccCCCCceecceEEEEEeCCc
Confidence 689999999999999999999732110 111234555555556667778
Q ss_pred eEEEeeChhhHH-------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 405 KFIIADTPGHEQ-------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 405 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
.+.++||||+.. +...+...+..+|++++|+|+++ +...........+...++| +++|+||+|+.
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 121 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA-------ELTQADYEVAEYLRRKGKP-VILVATKVDDP 121 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS-------CCCHHHHHHHHHHHHHTCC-EEEEEECCCSG
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCC-------cccHhHHHHHHHHHhcCCC-EEEEEECcccc
Confidence 899999999876 45566677899999999999988 4444444555555556666 89999999998
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+ +..++. ++++ .+++++||++|.|++++
T Consensus 122 ~~~~--------~~~~~~-~~~~--~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 122 KHEL--------YLGPLY-GLGF--GDPIPTSSEHARGLEEL 152 (161)
T ss_dssp GGGG--------GCGGGG-GGSS--CSCEECBTTTTBSHHHH
T ss_pred cchH--------hHHHHH-hCCC--CCeEEEecccCCChHHH
Confidence 6421 122233 3443 26899999999999984
No 72
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=162.57 Aligned_cols=153 Identities=21% Similarity=0.147 Sum_probs=104.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....++|+++|++|+|||||+++|++..- ..+...+++.+.....+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~ 51 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTF---------------------------------SGSYITTIGVDFKIRTV 51 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC------------------------------------CCTTTBSEEEEEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCC---------------------------------CCccCCCceeEEEEEEE
Confidence 345779999999999999999999986210 11222344555555555
Q ss_pred ecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-HHHHHHHH-HHcCCCeEEEEEecCC
Q psy3751 400 NTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-TKRHSIIA-HLLRIKHIIIAVNKMD 475 (967)
Q Consensus 400 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t~~~~~~~-~~~~~~~iivviNK~D 475 (967)
..++ ..+.++||||+++|...+...+..+|++|+|+|+++ ....+ ....+... ....-.++|+|+||+|
T Consensus 52 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~D 124 (181)
T 3tw8_B 52 EINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS-------AESFVNVKRWLHEINQNCDDVCRILVGNKND 124 (181)
T ss_dssp EETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHCTTSEEEEEEECTT
T ss_pred EECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 5555 678999999999988777788899999999999987 21111 12222222 2233356899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+..... ..+...+....++ +++++||++|.|++++
T Consensus 125 l~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 125 DPERKVVE----TEDAYKFAGQMGI---QLFETSAKENVNVEEM 161 (181)
T ss_dssp CGGGCCSC----HHHHHHHHHHHTC---CEEECBTTTTBSHHHH
T ss_pred CchhcccC----HHHHHHHHHHcCC---eEEEEECCCCCCHHHH
Confidence 87543211 1223444555565 8999999999999985
No 73
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.68 E-value=7.1e-17 Score=162.34 Aligned_cols=152 Identities=20% Similarity=0.153 Sum_probs=79.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..++|+++|++|+|||||+++|++.. + ..+...+++.+.....+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~------------------------~---------~~~~~~t~~~~~~~~~~~~ 52 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDA------------------------F---------NSTFISTIGIDFKIRTIEL 52 (183)
T ss_dssp SEEEEEEEECCCCC-------------------------------------------------CHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC------------------------C---------CCCCCCcccceeEEEEEEE
Confidence 457899999999999999999998611 0 0111223444444444555
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~ 476 (967)
++ ..+.++||||+++|...+...++.+|++|+|+|+++ ... ....+.+..+... .-.++++|+||+|+
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (183)
T 2fu5_C 53 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN-------EKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125 (183)
T ss_dssp TTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--C
T ss_pred CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccC
Confidence 54 678999999999988877778899999999999987 211 2223333333332 22459999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
.+..+.. .++.+.+.+..++ +++++||++|.|++++.
T Consensus 126 ~~~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 126 NDKRQVS----KERGEKLALDYGI---KFMETSAKANINVENAF 162 (183)
T ss_dssp CSCCCSC----HHHHHHHHHHHTC---EEEECCC---CCHHHHH
T ss_pred CccCcCC----HHHHHHHHHHcCC---eEEEEeCCCCCCHHHHH
Confidence 7532211 1233445556665 89999999999999853
No 74
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=162.32 Aligned_cols=154 Identities=21% Similarity=0.232 Sum_probs=106.2
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|++|+|||||+++|++..- ..+...+++.+.....+.
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 59 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTY---------------------------------TESYISTIGVDFKIRTIE 59 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCC---------------------------------CSCCCCCSSEEEEEEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCC---------------------------------CCCCCCcccceEEEEEEE
Confidence 35678999999999999999999986211 112223445555555555
Q ss_pred cCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeEEEEEecCCc
Q psy3751 401 TPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHIIIAVNKMDL 476 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~iivviNK~D~ 476 (967)
.++ ..+.++||||+++|...+...+..+|++|+|+|+++.. ........+..+.... -.++++|+||+|+
T Consensus 60 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 133 (196)
T 3tkl_A 60 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE------SFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133 (196)
T ss_dssp ETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHH------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred ECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHH------HHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 555 56889999999998888888889999999999998711 1112233333333321 2458999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
.+...... .+.+.+.+.+++ +++++||++|.|++++.
T Consensus 134 ~~~~~~~~----~~~~~~~~~~~~---~~~~~Sa~~g~gv~~l~ 170 (196)
T 3tkl_A 134 TTKKVVDY----TTAKEFADSLGI---PFLETSAKNATNVEQSF 170 (196)
T ss_dssp TTTCCSCH----HHHHHHHHHTTC---CEEEECTTTCTTHHHHH
T ss_pred ccccccCH----HHHHHHHHHcCC---cEEEEeCCCCCCHHHHH
Confidence 76432211 223445566665 89999999999999853
No 75
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.67 E-value=1.8e-16 Score=162.36 Aligned_cols=100 Identities=29% Similarity=0.296 Sum_probs=71.3
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchh-hHHHHHHHHHH-cCCCeEEEEEecCCccCcCH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLT-QTKRHSIIAHL-LRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~-~t~~~~~~~~~-~~~~~iivviNK~D~~~~~~ 481 (967)
..+.||||||+++|...+...+..+|++|+|+|+++ .... .....+..+.. .+ .++++|+||+| ....+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~-------~~s~~~~~~~~~~i~~~~~-~piilv~NK~D-~~~~~ 163 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN-------SNTLDRAKTWVNQLKISSN-YIIILVANKID-KNKFQ 163 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHSC-CEEEEEEECTT-CC-CC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC-------HHHHHHHHHHHHHHHhhCC-CcEEEEEECCC-ccccc
Confidence 678999999999998888888899999999999988 3221 22233333333 44 56999999999 32222
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. ..++++.+++..++ +++++||++|.|++++
T Consensus 164 ~----~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l 194 (208)
T 3clv_A 164 V----DILEVQKYAQDNNL---LFIQTSAKTGTNIKNI 194 (208)
T ss_dssp S----CHHHHHHHHHHTTC---EEEEECTTTCTTHHHH
T ss_pred C----CHHHHHHHHHHcCC---cEEEEecCCCCCHHHH
Confidence 1 12334555666665 8999999999999985
No 76
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.67 E-value=2.5e-16 Score=158.80 Aligned_cols=152 Identities=22% Similarity=0.300 Sum_probs=103.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..++|+++|++|+|||||+++|++.... .+....++.+.....+..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 54 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK---------------------------------DDSNHTIGVEFGSKIINV 54 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC---------------------------------TTCCCCSEEEEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC---------------------------------CCCCCccceEEEEEEEEE
Confidence 45789999999999999999999862110 111223344444444444
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~ 476 (967)
++ ..+.++||||+++|...+...+..+|++|+|+|+++ ... ......+..+... .-.++++|+||+|+
T Consensus 55 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (186)
T 2bme_A 55 GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS-------RETYNALTNWLTDARMLASQNIVIILCGNKKDL 127 (186)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 44 578899999999999988889999999999999987 211 1112222222221 22459999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
.+..+... .+...+.+..++ +++++||++|.|++++.
T Consensus 128 ~~~~~~~~----~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~ 164 (186)
T 2bme_A 128 DADREVTF----LEASRFAQENEL---MFLETSALTGENVEEAF 164 (186)
T ss_dssp GGGCCSCH----HHHHHHHHHTTC---EEEECCTTTCTTHHHHH
T ss_pred ccccccCH----HHHHHHHHHcCC---EEEEecCCCCCCHHHHH
Confidence 75322111 223445555554 89999999999999853
No 77
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.67 E-value=3.8e-17 Score=175.20 Aligned_cols=145 Identities=23% Similarity=0.288 Sum_probs=103.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|++|+|||||+|+|++.. + ......|+|++.....+...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~------------------------~---------~v~~~~g~t~~~~~~~~~~~~ 49 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR------------------------Q---------RVGNWAGVTVERKEGQFSTTD 49 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC------------------------E---------EEEECTTSSSEEEEEEEECSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC------------------------c---------ccCCCCCeeEEEEEEEEEeCC
Confidence 4789999999999999999998721 1 111235778888878888888
Q ss_pred ceEEEeeChhhHHHH------------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEE
Q psy3751 404 RKFIIADTPGHEQYT------------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAV 471 (967)
Q Consensus 404 ~~~~liDtpG~~~~~------------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivvi 471 (967)
..+.+|||||+.++. .........+|++|+|+|+++ ..........+...++| +|+|+
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~---------~~~~~~~~~~l~~~~~p-~ivv~ 119 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN---------LERNLYLTLQLLELGIP-CIVAL 119 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG---------HHHHHHHHHHHHHHTCC-EEEEE
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC---------hHHHHHHHHHHHhcCCC-EEEEE
Confidence 899999999976543 111122368999999999986 12333444455566777 99999
Q ss_pred ecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 472 NKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 472 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
||+|+.+... +......+.+.+++ +++++||++|.|++++
T Consensus 120 NK~Dl~~~~~-----~~~~~~~l~~~lg~---~~i~~SA~~g~gi~el 159 (274)
T 3i8s_A 120 NMLDIAEKQN-----IRIEIDALSARLGC---PVIPLVSTRGRGIEAL 159 (274)
T ss_dssp ECHHHHHHTT-----EEECHHHHHHHHTS---CEEECCCGGGHHHHHH
T ss_pred ECccchhhhh-----HHHHHHHHHHhcCC---CEEEEEcCCCCCHHHH
Confidence 9999864221 11123344555665 8999999999999984
No 78
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=99.67 E-value=1.9e-16 Score=181.78 Aligned_cols=173 Identities=12% Similarity=0.030 Sum_probs=133.3
Q ss_pred HHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC---hhhHHHHHHHHHHhCCcEEEEecchhhhhcc
Q psy3751 34 SAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF---PEVISFRDNCISKLGETLIVRSVEDSIMKGT 110 (967)
Q Consensus 34 ~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~---pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~ 110 (967)
+...++++|++|||+||+||||++.++....+.++.++|+|+|... ++..++++++|+++|+++++.+.+......
T Consensus 15 ~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~~~~~~~- 93 (464)
T 3a2k_A 15 LSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDVPAFQR- 93 (464)
T ss_dssp SSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHT-
T ss_pred CCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEechhhhhh-
Confidence 4556789999999999999999999875544678999999999873 357789999999999999998775321110
Q ss_pred cccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCc
Q psy3751 111 VRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGEN 190 (967)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 190 (967)
..+...+..|..+|+..+.+.++++|++.+++||+.||..++..+++.++....+...+ .|.. . .++.
T Consensus 94 -~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm---~~~~-~-------~~~~ 161 (464)
T 3a2k_A 94 -SAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGI---PVKR-P-------FHGG 161 (464)
T ss_dssp -TTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCS---CSEE-E-------CSSS
T ss_pred -ccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCC---Cccc-c-------CCCC
Confidence 12334456677788888999999999999999999999999988888876654332211 1110 0 0123
Q ss_pred eEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 191 IRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 191 ~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
..++||++|+++||++|++.+|+|+....
T Consensus 162 ~iiRPLl~~~k~eI~~ya~~~gl~~~~d~ 190 (464)
T 3a2k_A 162 YLIRPFLAVSRAEIEAYCRQMGLSPRCDP 190 (464)
T ss_dssp EEECGGGGSCHHHHHHHHHHTCCSSCSCT
T ss_pred EEECCCccCcHHHHHHHHHHcCCCeEECC
Confidence 67899999999999999999999987665
No 79
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.67 E-value=3.2e-17 Score=173.54 Aligned_cols=144 Identities=22% Similarity=0.217 Sum_probs=100.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
.+|+++|++|+|||||+|+|++.. . ......|+|++.....+..++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~------------------------~---------~v~~~pg~Tv~~~~~~~~~~~~ 48 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN------------------------Q---------RVGNWPGVTVEKKTGEFLLGEH 48 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS------------------------E---------EEEECTTSSSEEEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC------------------------C---------CccCCCCceEEEEEEEEEECCe
Confidence 479999999999999999998721 1 1112247788877778888888
Q ss_pred eEEEeeChhhHHHHH----------HHHhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEe
Q psy3751 405 KFIIADTPGHEQYTR----------NMITGA--STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472 (967)
Q Consensus 405 ~~~liDtpG~~~~~~----------~~~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviN 472 (967)
.+.++||||+.++.. .....+ ..+|++|+|+|+++ ..........+..+++| +|+|+|
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~---------~~~~~~l~~~l~~~~~p-vilv~N 118 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH---------LERHLYLTSQLFELGKP-VVVALN 118 (256)
T ss_dssp EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG---------HHHHHHHHHHHTTSCSC-EEEEEE
T ss_pred EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC---------chhHHHHHHHHHHcCCC-EEEEEE
Confidence 999999999765532 111223 78999999999986 12223333444455666 999999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+.+... +......+.+.+++ +++++||++|.|++++
T Consensus 119 K~Dl~~~~~-----~~~~~~~l~~~lg~---~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 119 MMDIAEHRG-----ISIDTEKLESLLGC---SVIPIQAHKNIGIPAL 157 (256)
T ss_dssp CHHHHHHTT-----CEECHHHHHHHHCS---CEEECBGGGTBSHHHH
T ss_pred ChhcCCcCC-----cHHHHHHHHHHcCC---CEEEEECCCCCCHHHH
Confidence 999874321 11123334455565 8999999999999984
No 80
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=8.7e-17 Score=184.61 Aligned_cols=158 Identities=23% Similarity=0.261 Sum_probs=104.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+|+|++....+ .....|+|.+.....+..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~--------------------------------v~~~~gtT~d~~~~~i~~ 225 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL--------------------------------VSPIPGTTRDPVDDEVFI 225 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEE--------------------------------ECCCC------CCEEEEE
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccc--------------------------------cCCCCCCcCCceEEEEEE
Confidence 456899999999999999999999732110 112246777776667788
Q ss_pred CCceEEEeeChhhHHHHHH------------HHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEE
Q psy3751 402 PKRKFIIADTPGHEQYTRN------------MITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIII 469 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~------------~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iiv 469 (967)
++..+.++||||..++... ....+..+|++++|+|+.. +...+.......+...+.+ +|+
T Consensus 226 ~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~-------~~~~~~~~i~~~l~~~~~~-~il 297 (439)
T 1mky_A 226 DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ-------GITRQDQRMAGLMERRGRA-SVV 297 (439)
T ss_dssp TTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT-------CCCHHHHHHHHHHHHTTCE-EEE
T ss_pred CCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC-------CCCHHHHHHHHHHHHcCCC-EEE
Confidence 8889999999997543321 2345678999999999998 5555555555556666765 999
Q ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 470 AVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 470 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
|+||+|+.+.++...+++.+.+...+...+ ..+++++||++|.|++++.+
T Consensus 298 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 298 VFNKWDLVVHREKRYDEFTKLFREKLYFID--YSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp EEECGGGSTTGGGCHHHHHHHHHHHCGGGT--TSCEEECBTTTTBSHHHHHH
T ss_pred EEECccCCCchhhHHHHHHHHHHHHhccCC--CCcEEEEECCCCCCHHHHHH
Confidence 999999986433223334444433333332 35899999999999998653
No 81
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=2.4e-16 Score=159.92 Aligned_cols=153 Identities=23% Similarity=0.184 Sum_probs=103.6
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..+||+++|.+|+|||||+++|++..-. . ......|.+.......+..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~--~~~~~~~~~~~~~~~~~~~ 69 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD-----------------------------H--NISPTIGASFMTKTVPCGN 69 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC-----------------------------T--TCCCCSSEEEEEEEEECSS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------C--CcCCCcceeEEEEEEEeCC
Confidence 45789999999999999999999872110 0 0011123443333333444
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHcC--CCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLLR--IKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~~--~~~iivviNK~D~~~ 478 (967)
....+.++||||+++|...+...+..+|++|+|+|+++ ... ......+..+.... ..++++|+||+|+.+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~-------~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK-------QDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC-------THHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 45689999999999988777778899999999999987 221 22233333333332 345999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.. .++.+.+.+..++ +++++||++|.|++++
T Consensus 143 ~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 143 IREVP----LKDAKEYAESIGA---IVVETSAKNAINIEEL 176 (192)
T ss_dssp GCCSC----HHHHHHHHHTTTC---EEEECBTTTTBSHHHH
T ss_pred ccccC----HHHHHHHHHHcCC---EEEEEeCCCCcCHHHH
Confidence 32211 2234555666664 8999999999999984
No 82
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=3.1e-16 Score=160.20 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=102.6
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|.+|+|||||+++|++..- ..+....++.+.....+.
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 69 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLF---------------------------------PPGQGATIGVDFMIKTVE 69 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSC---------------------------------CTTCCCCCSEEEEEEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCC---------------------------------CCCCCCccceeEEEEEEE
Confidence 34678999999999999999999986210 011112233444444455
Q ss_pred cCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCc
Q psy3751 401 TPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDL 476 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~ 476 (967)
.++ ..+.++||||+++|...+...++.+|++|+|+|+++.. ........+..+... ...++++|+||+|+
T Consensus 70 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~------s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 143 (201)
T 2ew1_A 70 INGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE------SFRCLPEWLREIEQYASNKVITVLVGNKIDL 143 (201)
T ss_dssp ETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHH------HHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred ECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 554 47889999999999988888899999999999998711 011122333333322 23458999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+.. .++.+.+.+..++ +++++||++|.|++++
T Consensus 144 ~~~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 144 AERREVS----QQRAEEFSEAQDM---YYLETSAKESDNVEKL 179 (201)
T ss_dssp GGGCSSC----HHHHHHHHHHHTC---CEEECCTTTCTTHHHH
T ss_pred ccccccC----HHHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 7532211 1223344455554 8999999999999985
No 83
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=161.10 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=101.5
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....++|+++|.+|+|||||+++|++..- ..+....++.+.....+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~ 68 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTF---------------------------------CEACKSTVGVDFKIKTV 68 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC-----------------------------------------CCTTEEEEEEEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCC---------------------------------CcCCCCccceeEEEEEE
Confidence 345678999999999999999999986210 00111222333333444
Q ss_pred ecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHcC--CCeEEEEEecC
Q psy3751 400 NTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLLR--IKHIIIAVNKM 474 (967)
Q Consensus 400 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~~--~~~iivviNK~ 474 (967)
..++ ..+.++||||+++|...+...++.+|++|+|+|+++ ... ......+..+.... ..++++|+||+
T Consensus 69 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~-------~~s~~~~~~~~~~i~~~~~~~~piilV~NK~ 141 (192)
T 2il1_A 69 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK-------KETFDDLPKWMKMIDKYASEDAELLLVGNKL 141 (192)
T ss_dssp EETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 4444 578999999999998888888899999999999987 211 11222333333321 24599999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+.+..+... ++.+.+.+.+. ..+++++||++|.|++++
T Consensus 142 Dl~~~~~v~~----~~~~~~~~~~~--~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 142 DCETDREITR----QQGEKFAQQIT--GMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp GGGGGCCSCH----HHHHHHHHTST--TCEEEECBTTTTBSHHHH
T ss_pred ccccccccCH----HHHHHHHHhcC--CCeEEEEeCCCCCCHHHH
Confidence 9975432111 22334444432 348999999999999985
No 84
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=3.5e-16 Score=156.71 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=95.0
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+..++|+++|++|+|||||+++|++..-. ..+....++.+.....+.
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~--------------------------------~~~~~~t~~~~~~~~~~~ 54 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFL--------------------------------AGTFISTVGIDFRNKVLD 54 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------------------------CCCCCCCCSCEEEEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCC--------------------------------CCCcCCceeeEEEEEEEE
Confidence 346789999999999999999999872110 001112233333333334
Q ss_pred cCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCC
Q psy3751 401 TPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMD 475 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D 475 (967)
.++ ..+.++||||+++|...+...+..+|++|+|+|+++ ... ....+.+..+... ...++++|+||+|
T Consensus 55 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 127 (180)
T 2g6b_A 55 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN-------KASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127 (180)
T ss_dssp ETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHSCTTCEEEEEEECCS
T ss_pred ECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 444 478899999999998888888999999999999987 211 1222333333321 2345999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+..+... ++.+.+.+..++ +++++||++|.|++++
T Consensus 128 l~~~~~~~~----~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 128 SAHERVVKR----EDGEKLAKEYGL---PFMETSAKTGLNVDLA 164 (180)
T ss_dssp TTSCCCSCH----HHHHHHHHHHTC---CEEECCTTTCTTHHHH
T ss_pred cCcccccCH----HHHHHHHHHcCC---eEEEEeCCCCCCHHHH
Confidence 986432111 223344555565 8999999999999985
No 85
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.66 E-value=4.6e-16 Score=157.84 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=100.4
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeec-eeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVA-YRYF 399 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~ 399 (967)
....++|+++|++|+|||||+++|++..-. .+....++.+.. ...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~ 54 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFN---------------------------------SKFITTVGIDFREKRVV 54 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------CSCCCCCSEEEEEEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCC---------------------------------cCcccccceeeeeEEEE
Confidence 346789999999999999999999862110 000111122222 1222
Q ss_pred ecC-----------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHH----cC
Q psy3751 400 NTP-----------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHL----LR 463 (967)
Q Consensus 400 ~~~-----------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~----~~ 463 (967)
..+ ...+.++||||+++|...+...+..+|++|+|+|+++ ... ......+..+.. .+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~ 127 (195)
T 3bc1_A 55 YRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTN-------EQSFLNVRNWISQLQMHAYSEN 127 (195)
T ss_dssp ECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHSSSSS
T ss_pred EecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcCCCC
Confidence 222 3478999999999999988889999999999999987 211 122333332322 24
Q ss_pred CCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 464 IKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 464 ~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+ ++++|+||+|+.+..+.. .++++.+.+..++ +++++||++|.|++++
T Consensus 128 ~-piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l 175 (195)
T 3bc1_A 128 P-DIVLCGNKSDLEDQRAVK----EEEARELAEKYGI---PYFETSAANGTNISHA 175 (195)
T ss_dssp C-CEEEEEECTTCGGGCCSC----HHHHHHHHHHHTC---CEEECCTTTCTTHHHH
T ss_pred C-CEEEEEECcccccccccC----HHHHHHHHHHcCC---CEEEEECCCCCCHHHH
Confidence 4 499999999997532211 1233445555565 8999999999999985
No 86
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.66 E-value=7.1e-16 Score=156.56 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=103.6
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|.+|+|||||+++|++..... .....|.|.+.....
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------------------------~~~~~~~t~~~~~~~-- 65 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF--------------------------------VSKTPGKTRSINFYL-- 65 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC--------------------------------CCSSCCCCCCEEEEE--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc--------------------------------ccCCCCCccCeEEEE--
Confidence 3466899999999999999999999732100 001123333322221
Q ss_pred cCCceEEEeeChh----------hHHHH---HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeE
Q psy3751 401 TPKRKFIIADTPG----------HEQYT---RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHI 467 (967)
Q Consensus 401 ~~~~~~~liDtpG----------~~~~~---~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~i 467 (967)
.+.++.++|||| ++.|. .........+|++++|+|+.. +........+..+...++| +
T Consensus 66 -~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~-------~~~~~~~~~~~~~~~~~~p-~ 136 (195)
T 3pqc_A 66 -VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRI-------PPQDSDLMMVEWMKSLNIP-F 136 (195)
T ss_dssp -ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-------CCCHHHHHHHHHHHHTTCC-E
T ss_pred -ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCC-------CCCHHHHHHHHHHHHcCCC-E
Confidence 245689999999 44443 344455566699999999987 5555556666666677776 8
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
++|+||+|+.+..+ .....++++.++...+ ..+++++||++|.|++++
T Consensus 137 i~v~nK~Dl~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l 184 (195)
T 3pqc_A 137 TIVLTKMDKVKMSE--RAKKLEEHRKVFSKYG--EYTIIPTSSVTGEGISEL 184 (195)
T ss_dssp EEEEECGGGSCGGG--HHHHHHHHHHHHHSSC--CSCEEECCTTTCTTHHHH
T ss_pred EEEEEChhcCChHH--HHHHHHHHHHHHhhcC--CCceEEEecCCCCCHHHH
Confidence 99999999985432 3445555666665543 358999999999999984
No 87
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.66 E-value=5.9e-16 Score=154.54 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=98.6
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|.+|+|||||+++|++..- ..+....++.+.....+.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 50 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKF---------------------------------DTQLFHTIGVEFLNKDLE 50 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCC---------------------------------CC----CCSEEEEEEEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCC---------------------------------CCCCCCceeeeEEEEEEE
Confidence 34578999999999999999999986211 011112233333334444
Q ss_pred cCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHH-------cCCCeEEEE
Q psy3751 401 TPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHL-------LRIKHIIIA 470 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~-------~~~~~iivv 470 (967)
.++ ..+.++||||+++|...+...+..+|++++|+|+++ ... ......+..... .++ ++++|
T Consensus 51 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~-p~i~v 122 (177)
T 1wms_A 51 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD-------SQSFQNLSNWKKEFIYYADVKEPESF-PFVIL 122 (177)
T ss_dssp ETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHHTCSCTTTS-CEEEE
T ss_pred ECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC-------HHHHHHHHHHHHHHHHHccccccCCC-cEEEE
Confidence 444 478999999999999888888899999999999987 211 111112221111 233 49999
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+||+|+.+.. .. .++...+.+... ..+++++||++|.|++++
T Consensus 123 ~nK~Dl~~~~-~~----~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 123 GNKIDISERQ-VS----TEEAQAWCRDNG--DYPYFETSAKDATNVAAA 164 (177)
T ss_dssp EECTTCSSCS-SC----HHHHHHHHHHTT--CCCEEECCTTTCTTHHHH
T ss_pred EECCcccccc-cC----HHHHHHHHHhcC--CceEEEEeCCCCCCHHHH
Confidence 9999997421 11 122333444222 348999999999999985
No 88
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.66 E-value=4.4e-16 Score=158.80 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=100.6
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
.......+|+++|.+|+|||||+++|++.. +... + ...|+......
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~------------------------~~~~---~-------~~~t~~~~~~~ 57 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQ------------------------SSSK---H-------ITATVGYNVET 57 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-------------------------------C-------CCCCSSEEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCC------------------------Cccc---c-------cccccceeEEE
Confidence 355678899999999999999999998621 1000 0 01122233334
Q ss_pred eecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc-----------CCCeE
Q psy3751 399 FNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL-----------RIKHI 467 (967)
Q Consensus 399 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~-----------~~~~i 467 (967)
+...+..+.+|||||+++|...+...+..+|++|+|+|+++.. ......+.+..+... +++ +
T Consensus 58 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-i 130 (199)
T 4bas_A 58 FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHL------RLCVVKSEIQAMLKHEDIRRELPGGGRVP-F 130 (199)
T ss_dssp EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTSHHHHSBCTTSCBCC-E
T ss_pred EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHH------HHHHHHHHHHHHHhChhhhhcccccCCCC-E
Confidence 5667789999999999999888888889999999999999721 112222333322222 445 9
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHH--HHHHHcCCccceEEeccccCCCccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYK--KFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+||+|+.+... .+++.+.+. .+.+.. .++++++||++|.|++++
T Consensus 131 ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~g~gv~~l 179 (199)
T 4bas_A 131 LFFANKMDAAGAKT--AAELVEILDLTTLMGDH---PFVIFASNGLKGTGVHEG 179 (199)
T ss_dssp EEEEECTTSTTCCC--HHHHHHHHTHHHHHTTS---CEEEEECBTTTTBTHHHH
T ss_pred EEEEECcCCCCCCC--HHHHHHHhcchhhccCC---eeEEEEeeCCCccCHHHH
Confidence 99999999986432 122222221 111222 458999999999999985
No 89
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.66 E-value=2.7e-16 Score=155.75 Aligned_cols=152 Identities=21% Similarity=0.188 Sum_probs=99.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|++|+|||||+++|++..-.- ..+...|.+.......+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE-------------------------------FQESTIGAAFLTQTVCLDDT 53 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-------------------------------TCCCCSSEEEEEEEEEETTE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-------------------------------CCCCccceEEEEEEEEECCE
Confidence 46899999999999999999998621100 00111233332222233333
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCccCc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~~~~ 479 (967)
...+.++||||+++|...+...+..+|++++|+|+++ ... ......+..+... ...++++|+||+|+.+.
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN-------EESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 5678999999999988877788899999999999987 211 2223333333332 12348888999998753
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+... ++...+.+..++ +++++||++|.|++++
T Consensus 127 ~~~~~----~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 127 RAVDF----QEAQSYADDNSL---LFMETSAKTSMNVNEI 159 (170)
T ss_dssp CCSCH----HHHHHHHHHTTC---EEEECCTTTCTTHHHH
T ss_pred cccCH----HHHHHHHHHcCC---eEEEEeCCCCCCHHHH
Confidence 22111 223445555554 8999999999999984
No 90
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=3.9e-16 Score=154.51 Aligned_cols=152 Identities=20% Similarity=0.196 Sum_probs=97.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP- 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 402 (967)
.++|+++|++|+|||||+++|++..-. .+....++.+.....+..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 49 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA---------------------------------ENKEPTIGAAFLTQRVTINE 49 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------TTCCCCSSEEEEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC---------------------------------CCCCCccceeEEEEEEEECC
Confidence 579999999999999999999872110 0111112222222223333
Q ss_pred -CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHH-c-CCCeEEEEEecCCccC
Q psy3751 403 -KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHL-L-RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~-~-~~~~iivviNK~D~~~ 478 (967)
...+.++||||+++|...+...+..+|++++|+|+++ ... ......+..... . .-.++++|+||+|+.+
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK-------PQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC-------hHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 3578999999999988878888899999999999987 211 122222222222 1 2345899999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
....+ +...+..+.+.+..++ +++++||++|.|++++
T Consensus 123 ~~~~~-~v~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 123 EGGER-KVAREEGEKLAEEKGL---LFFETSAKTGENVNDV 159 (170)
T ss_dssp SSCCC-CSCHHHHHHHHHHHTC---EEEECCTTTCTTHHHH
T ss_pred ccccc-CCCHHHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 31100 0011223344555555 8999999999999984
No 91
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.66 E-value=6.2e-16 Score=158.14 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=100.9
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..+..++|+++|.+|+|||||+++|++.. + ..+....++.+.....+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~------------------------~---------~~~~~~t~~~~~~~~~~ 71 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGA------------------------F---------SERQGSTIGVDFTMKTL 71 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSC------------------------C-------------------CEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCC------------------------C---------CCCCCCCcceEEEEEEE
Confidence 34567899999999999999999998621 1 00111122233333344
Q ss_pred ecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCC
Q psy3751 400 NTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMD 475 (967)
Q Consensus 400 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D 475 (967)
..++ ..+.+|||||+++|...+...++.+|++|+|+|+++.. ........+..+... .-.++++|+||+|
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~------s~~~~~~~~~~i~~~~~~~~piilv~NK~D 145 (201)
T 2hup_A 72 EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS------SFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145 (201)
T ss_dssp EETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHH------HHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCEEEEEECCc
Confidence 4444 57899999999999888888889999999999998711 111222333333322 2245899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+..+.. .++++.+.+..++ .+++++||++|.|++++
T Consensus 146 l~~~~~v~----~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 146 LSELREVS----LAEAQSLAEHYDI--LCAIETSAKDSSNVEEA 183 (201)
T ss_dssp CGGGCCSC----HHHHHHHHHHTTC--SEEEECBTTTTBSHHHH
T ss_pred cccccccC----HHHHHHHHHHcCC--CEEEEEeCCCCCCHHHH
Confidence 97532211 1234445556654 27899999999999985
No 92
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.66 E-value=5.1e-16 Score=155.21 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=101.0
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|++|+|||||+++|++..... . .....|.+.......+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~--~~~t~~~~~~~~~~~~~ 60 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMA-----------------------------D--CPHTIGVEFGTRIIEVS 60 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------S--CTTSCCCCEEEEEEEET
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------C--CCCccceEEEEEEEEEC
Confidence 3467999999999999999999998722100 0 00011222222222222
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCcc
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDLI 477 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~~ 477 (967)
.....+.++||||+++|...+...+..+|++|+|+|+++ ... ......+..+... .-.++++|+||+|+.
T Consensus 61 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 61 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR-------RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp TEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 233578999999999998888888899999999999987 211 1122222222221 224599999999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+.. .++.+++.+..++ +++++||++|.|++++
T Consensus 134 ~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 134 AQRDVT----YEEAKQFAEENGL---LFLEASAKTGENVEDA 168 (179)
T ss_dssp GGCCSC----HHHHHHHHHHTTC---EEEECCTTTCTTHHHH
T ss_pred cccccC----HHHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 533211 1234455666665 8999999999999984
No 93
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.66 E-value=7.5e-16 Score=159.58 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=100.6
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..++|+++|.+|+|||||+++|++.. + ..+....++.+.....+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~------------------------~---------~~~~~~t~~~~~~~~~~~~ 69 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK------------------------F---------NPKFITTVGIDFREKRVVY 69 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC------------------------C---------CCEEEEEEEEEEEEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC------------------------C---------CcCCCCceeEEEEEEEEEE
Confidence 467899999999999999999998621 1 0011112223332222332
Q ss_pred C------------CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH-HHHHHHHHHc---CCC
Q psy3751 402 P------------KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT-KRHSIIAHLL---RIK 465 (967)
Q Consensus 402 ~------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t-~~~~~~~~~~---~~~ 465 (967)
+ ...+.||||||+++|...+...+..+|++|+|+|+++ ....+. ...+..+... .-.
T Consensus 70 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~-------~~s~~~~~~~l~~i~~~~~~~~~ 142 (217)
T 2f7s_A 70 NAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS-------QQSFLNVRNWMSQLQANAYCENP 142 (217)
T ss_dssp EC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC-------HHHHHHHHHHHHTCCCCCTTTCC
T ss_pred CCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCcCCC
Confidence 2 4578999999999999888888999999999999987 211111 1111111110 234
Q ss_pred eEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 466 HIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 466 ~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
++++|+||+|+.+..+.. .++.+.+.+..++ +++++||++|.|++++.
T Consensus 143 piilV~NK~Dl~~~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~ 190 (217)
T 2f7s_A 143 DIVLIGNKADLPDQREVN----ERQARELADKYGI---PYFETSAATGQNVEKAV 190 (217)
T ss_dssp EEEEEEECTTCGGGCCSC----HHHHHHHHHHTTC---CEEEEBTTTTBTHHHHH
T ss_pred CEEEEEECCccccccccC----HHHHHHHHHHCCC---cEEEEECCCCCCHHHHH
Confidence 599999999997532211 1234455666665 79999999999999854
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=3.1e-16 Score=158.31 Aligned_cols=152 Identities=19% Similarity=0.247 Sum_probs=95.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
++.++|+++|++|+|||||+++|++. .+. . ...|+......+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~------------------------~~~-~-----------~~~t~~~~~~~~~~ 57 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN------------------------EVV-H-----------TSPTIGSNVEEIVI 57 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT------------------------SCE-E-----------EECCSCSSCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC------------------------CCC-c-----------CcCCCccceEEEEE
Confidence 45689999999999999999999861 111 0 01122233344556
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~~ 478 (967)
++..+.++||||+++|...+...+..+|++|+|+|+++.. .+ ....+.+..... ..-.++++|+||+|+.+
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE-----RI-SVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT-----TH-HHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH-----HH-HHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 6789999999999988777777788999999999998721 12 222333333322 13355999999999976
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .+++.+.+.. ..+...+.+++++||++|.|++++
T Consensus 132 ~~~--~~~i~~~~~~--~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 132 CMT--VAEISQFLKL--TSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp CCC--HHHHHHHHTG--GGCCSSCEEEEECBTTTTBTHHHH
T ss_pred CCC--HHHHHHHhCh--hhhcCCCcEEEEccCCCCcCHHHH
Confidence 321 1222221110 012222458999999999999984
No 95
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.65 E-value=7.3e-17 Score=181.71 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=107.0
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|++|+|||||+|+|++... ...+...|+|++.....++
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~--------------------------------~~~~~~~gtT~d~~~~~~~ 78 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNV--------------------------------SIVSDYAGTTTDPVYKSME 78 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC---------------------------------------------CCCCEEEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCC--------------------------------CccCCCCCeeeeeEEEEEE
Confidence 45678999999999999999999987211 0123346778888877777
Q ss_pred cCCc-eEEEeeChhhHHH-------HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEe
Q psy3751 401 TPKR-KFIIADTPGHEQY-------TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472 (967)
Q Consensus 401 ~~~~-~~~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviN 472 (967)
..+. .+++|||||+.+| ...+...+..+|++|+|+|+. ...++.+.+..+...+++ +|+|+|
T Consensus 79 ~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~---------~~~~~~~~l~~l~~~~~p-iIvV~N 148 (423)
T 3qq5_A 79 LHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA---------PTPYEDDVVNLFKEMEIP-FVVVVN 148 (423)
T ss_dssp ETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS---------CCHHHHHHHHHHHHTTCC-EEEECC
T ss_pred ECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC---------ChHHHHHHHHHHHhcCCC-EEEEEe
Confidence 7665 8999999998765 344666778999999999982 346778888888888877 899999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+.+.... +..+.+.+.+++ +++++||++|.|++++
T Consensus 149 K~Dl~~~~~~------~~~~~l~~~~g~---~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 149 KIDVLGEKAE------ELKGLYESRYEA---KVLLVSALQKKGFDDI 186 (423)
T ss_dssp CCTTTTCCCT------HHHHHSSCCTTC---CCCCCSSCCTTSTTTH
T ss_pred CcCCCCccHH------HHHHHHHHHcCC---CEEEEECCCCCCHHHH
Confidence 9999875432 222333444444 8999999999999984
No 96
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.65 E-value=1.8e-16 Score=158.54 Aligned_cols=151 Identities=20% Similarity=0.241 Sum_probs=100.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|++|+|||||+++|++..- ..+....++.+.....+..+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSF---------------------------------DNTYQATIGIDFLSKTMYLE 59 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC---------------------------------CSSCCCCCSEEEEEEEEEET
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC---------------------------------CCCCCCceeeEEEEEEEEEC
Confidence 458999999999999999999986211 01112233444444444444
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~ 478 (967)
+ ..+.++||||+++|...+...+..+|++++|+|+++.. ........+..+... .-.++++|+||+|+.+
T Consensus 60 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN------SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHH------HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 4 47899999999988877777788999999999998711 111222222222221 2345999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+... .+...+.+..++ +++++||++|.|++++
T Consensus 134 ~~~~~~----~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 134 KRQVST----EEGERKAKELNV---MFIETSAKAGYNVKQL 167 (179)
T ss_dssp GCCSCH----HHHHHHHHHHTC---EEEEEBTTTTBSHHHH
T ss_pred cCcCCH----HHHHHHHHHcCC---eEEEEeCCCCCCHHHH
Confidence 432111 223334445554 8999999999999984
No 97
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.65 E-value=4e-16 Score=154.64 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=93.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+++|++..-. .+....++.+.....+..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~~ 50 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFN---------------------------------DKHITTLGASFLTKKLNI 50 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCC---------------------------------SSCCCCCSCEEEEEEEES
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC---------------------------------cCCCCccceEEEEEEEEE
Confidence 45689999999999999999999972110 001112222222233444
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~ 476 (967)
++ ..+.++||||+++|.......+..+|++++|+|+++ ... ......+..+... .-.++++|+||+|+
T Consensus 51 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 123 (170)
T 1z08_A 51 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD-------EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123 (170)
T ss_dssp SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG
T ss_pred CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 33 467899999999998888888899999999999987 211 1222222222221 22458999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+.. .++.+.+.+..+. +++++||++|.|++++
T Consensus 124 ~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 159 (170)
T 1z08_A 124 EKERHVS----IQEAESYAESVGA---KHYHTSAKQNKGIEEL 159 (170)
T ss_dssp GGGCCSC----HHHHHHHHHHTTC---EEEEEBTTTTBSHHHH
T ss_pred ccccccC----HHHHHHHHHHcCC---eEEEecCCCCCCHHHH
Confidence 7632211 1234445666664 8899999999999984
No 98
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.65 E-value=2.9e-16 Score=155.25 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=97.6
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|++|+|||||+++|++..-. .+....++.+.....+..+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~~~ 50 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT---------------------------------KDYKKTIGVDFLERQIQVN 50 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC---------------------------------CCSSCCCSSSEEEEEEEET
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC---------------------------------CCCCCceEEEEEEEEEEEC
Confidence 5689999999999999999999862110 0001111222222233333
Q ss_pred --CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH--cCCCeEEEEEecCCccC
Q psy3751 403 --KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL--LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~--~~~~~iivviNK~D~~~ 478 (967)
...+.++||||+++|...+...+..+|++++|+|+++.. ........+..+.. .+.| +++|+||+|+.+
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 123 (168)
T 1z2a_A 51 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE------SFEAISSWREKVVAEVGDIP-TALVQNKIDLLD 123 (168)
T ss_dssp TEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHH------HHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGG
T ss_pred CEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHH------HHHHHHHHHHHHHHhCCCCC-EEEEEECcccCc
Confidence 347899999999988766667778999999999998721 01122222222221 2444 999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.. .++.+.+.+..++ +++++||++|.|++++
T Consensus 124 ~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 124 DSCIK----NEEAEGLAKRLKL---RFYRTSVKEDLNVSEV 157 (168)
T ss_dssp GCSSC----HHHHHHHHHHHTC---EEEECBTTTTBSSHHH
T ss_pred ccccC----HHHHHHHHHHcCC---eEEEEecCCCCCHHHH
Confidence 33211 1233445556665 8999999999999984
No 99
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.65 E-value=3e-16 Score=155.40 Aligned_cols=150 Identities=22% Similarity=0.228 Sum_probs=97.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|++|+|||||+++|++..-. .+...+++.+.....+..+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 48 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFN---------------------------------PSFITTIGIDFKIKTVDIN 48 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCC---------------------------------C-------CCEEEEEEESS
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCC---------------------------------CCCCCccceeEEEEEEEEC
Confidence 4589999999999999999999872110 0111223333333344444
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~ 478 (967)
+ ..+.++||||+++|...+...+..+|++++|+|+++.. ........+..+... .-.++++|+||+|+.+
T Consensus 49 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 49 GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDER------TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHH------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 4 46889999999988776777788999999999998711 111223333333332 1345999999999953
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... ..++...+.+..++ +++++||++|.|++++
T Consensus 123 ~~~-----~~~~~~~~~~~~~~---~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 123 RVV-----TADQGEALAKELGI---PFIESSAKNDDNVNEI 155 (170)
T ss_dssp CCS-----CHHHHHHHHHHHTC---CEEECBTTTTBSHHHH
T ss_pred Ccc-----CHHHHHHHHHHcCC---eEEEEECCCCCCHHHH
Confidence 211 11223445555665 8999999999999985
No 100
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.65 E-value=4.6e-16 Score=154.09 Aligned_cols=152 Identities=24% Similarity=0.220 Sum_probs=101.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|++|+|||||+++|++..-.. ......|.+.......+...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-------------------------------NINPTIGASFMTKTVQYQNE 53 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-------------------------------TCCCCCSEEEEEEEEEETTE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-------------------------------CCCCceeEEEEEEEEEECCe
Confidence 46899999999999999999998721100 00111233333333333333
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHcC--CCeEEEEEecCCccCc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLLR--IKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~~--~~~iivviNK~D~~~~ 479 (967)
...+.++||||+++|...+...+..+|++++|+|+++ ... ......+..+...+ ..++++|+||+|+.+.
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK-------EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 4678999999999888777777899999999999987 221 22233333333332 3458899999999764
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+.. .++.+.+.+..+. +++++||++|.|++++
T Consensus 127 ~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~l 159 (170)
T 1z0j_A 127 REVM----ERDAKDYADSIHA---IFVETSAKNAININEL 159 (170)
T ss_dssp CCSC----HHHHHHHHHHTTC---EEEECBTTTTBSHHHH
T ss_pred cccC----HHHHHHHHHHcCC---EEEEEeCCCCcCHHHH
Confidence 3211 1223445555554 8999999999999984
No 101
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.65 E-value=9.7e-16 Score=155.74 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=97.6
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|.+|+|||||+++|++..-. . ......|.|.+..+..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------~----------------------~~~~~~~~t~~~~~~~~- 67 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNL---------A----------------------RTSSKPGKTQTLNFYII- 67 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC--------------------------------------------CCEEEEEE-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc---------c----------------------ccCCCCCceeeEEEEEE-
Confidence 346789999999999999999999872100 0 00011233443333222
Q ss_pred cCCceEEEeeChh----------hHHHHHHHHhhccc---CCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeE
Q psy3751 401 TPKRKFIIADTPG----------HEQYTRNMITGAST---ADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHI 467 (967)
Q Consensus 401 ~~~~~~~liDtpG----------~~~~~~~~~~~~~~---aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~i 467 (967)
+.++.+||||| ++.|...+...+.. +|++++|+|+++ +...+..+.+..+...+.| +
T Consensus 68 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~~~~~~~~~~~~~~~~~p-~ 137 (195)
T 1svi_A 68 --NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH-------APSNDDVQMYEFLKYYGIP-V 137 (195)
T ss_dssp --TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-------CCCHHHHHHHHHHHHTTCC-E
T ss_pred --CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC-------CCCHHHHHHHHHHHHcCCC-E
Confidence 34799999999 66665544444444 499999999988 5545555555555556666 9
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
++|+||+|+.+..+ .....+++.+.+... ...+++++||++|.|++++
T Consensus 138 i~v~nK~Dl~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l 185 (195)
T 1svi_A 138 IVIATKADKIPKGK--WDKHAKVVRQTLNID--PEDELILFSSETKKGKDEA 185 (195)
T ss_dssp EEEEECGGGSCGGG--HHHHHHHHHHHHTCC--TTSEEEECCTTTCTTHHHH
T ss_pred EEEEECcccCChHH--HHHHHHHHHHHHccc--CCCceEEEEccCCCCHHHH
Confidence 99999999986432 222333333322211 2458999999999999984
No 102
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.65 E-value=3e-16 Score=155.64 Aligned_cols=152 Identities=19% Similarity=0.174 Sum_probs=99.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
++.++|+++|++|+|||||+++|++.. +. . ...|+......+..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~------------------------~~-----~-------~~~t~~~~~~~~~~ 48 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGE------------------------VV-----T-------TIPTIGFNVETVTY 48 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSS------------------------CC-----C-------CCCCSSEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC------------------------CC-----C-------cCCcCccceEEEEE
Confidence 456899999999999999999998621 10 0 01122223344556
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HH--cCCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HL--LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~--~~~~~iivviNK~D~~~ 478 (967)
++..+.++||||+++|...+...+..+|++++|+|+++.. .+. ...+.+... .. ..-.++++|+||+|+.+
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----s~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 49 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD-----RIG-ISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT-----THH-HHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH-----HHH-HHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 6788999999999998877778889999999999998721 122 222222222 21 12345999999999986
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.... .++.+.+. ........++++++||++|.|++++
T Consensus 123 ~~~~--~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 123 AMTS--SEMANSLG--LPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp CCCH--HHHHHHHT--GGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred CCCH--HHHHHHhC--chhccCCceEEEECcCCCCcCHHHH
Confidence 4321 22222211 0111112458999999999999984
No 103
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=3.8e-16 Score=158.30 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=104.5
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..+..+||+++|.+|+|||||+++|++..-. ... ....|.+.......+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------------~~~-----------~~t~~~~~~~~~~~~ 67 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFT--------------------PAF-----------VSTVGIDFKVKTVYR 67 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTC--------------------CCE-----------EEEETTTEEEEEEEE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCC--------------------ccc-----------CCCeeeEEEEEEEEE
Confidence 3456799999999999999999999862100 000 001122333333334
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCcc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLI 477 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~ 477 (967)
......+.|+||||++.|.......+..+|++|+|+|+++.. ........+..+... .-.++++|+||+|+.
T Consensus 68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE------SFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHH------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHH------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 445678999999999999988888899999999999998711 112223333333332 234599999999987
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..... .++.+.+.+..++ +++++||++|.|++++
T Consensus 142 ~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 142 EERVVP----TEKGQLLAEQLGF---DFFEASAKENISVRQA 176 (191)
T ss_dssp GGCCSC----HHHHHHHHHHHTC---EEEECBTTTTBSHHHH
T ss_pred cccccC----HHHHHHHHHHcCC---eEEEEECCCCCCHHHH
Confidence 543211 1223445556665 8999999999999985
No 104
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.65 E-value=1.1e-16 Score=169.87 Aligned_cols=146 Identities=17% Similarity=0.232 Sum_probs=102.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|++|+|||||+|+|++. .+. .....|+|++.....+...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~------------------------~~~---------~~~~pg~tv~~~~~~~~~~ 50 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT------------------------KQY---------VANWPGVTVEKKEGVFTYK 50 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT------------------------CEE---------EEECTTSCCEEEEEEEEET
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC------------------------CCc---------ccCCCCceEEEEEEEEEEC
Confidence 4689999999999999999999871 111 1122477887777777777
Q ss_pred CceEEEeeChhhHHHH---------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 403 KRKFIIADTPGHEQYT---------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~---------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
+..+.++||||+..|. ...+. ...+|++++|+|++. . .........+...++| +|+|+||
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~~d~ii~V~D~t~-------~--~~~~~~~~~l~~~~~p-vilv~NK 119 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLL-KGDADLVILVADSVN-------P--EQSLYLLLEILEMEKK-VILAMTA 119 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHH-HSCCSEEEEEEETTS-------C--HHHHHHHHHHHTTTCC-EEEEEEC
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHh-hcCCCEEEEEeCCCc-------h--hhHHHHHHHHHhcCCC-EEEEEEC
Confidence 8899999999976543 12211 158999999999987 1 1122333444556776 9999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+|+..... +..+...+.+.+++ +++++||++|.|++++.
T Consensus 120 ~Dl~~~~~-----i~~~~~~l~~~lg~---~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 120 IDEAKKTG-----MKIDRYELQKHLGI---PVVFTSSVTGEGLEELK 158 (258)
T ss_dssp HHHHHHTT-----CCBCHHHHHHHHCS---CEEECCTTTCTTHHHHH
T ss_pred cCCCCccc-----hHHHHHHHHHHcCC---CEEEEEeeCCcCHHHHH
Confidence 99864221 11123445566675 89999999999999853
No 105
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.65 E-value=3e-16 Score=158.75 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=102.5
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+..++|+++|.+|+|||||+++|++..-.. . .....|.+.......+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~--~~~t~~~~~~~~~~~~~ 67 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTP-----------------------------A--FVSTVGIDFKVKTVYRH 67 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------S--CCCCCCCEEEEEEEEET
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------C--cCCceeEEEEEEEEEEC
Confidence 3457899999999999999999998721100 0 00111333322222233
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~ 478 (967)
.....+.++||||+++|...+...+..+|++|+|+|+++.. ........+..+... ...++++|+||+|+.+
T Consensus 68 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 68 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE------SFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp TEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHH------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 33457899999999988777778889999999999998721 112233333333333 2345999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.. .++.+.+.+.+++ +++++||++|.|++++
T Consensus 142 ~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 142 ERVVP----AEDGRRLADDLGF---EFFEASAKENINVKQV 175 (189)
T ss_dssp GCCSC----HHHHHHHHHHHTC---EEEECBTTTTBSHHHH
T ss_pred ccCCC----HHHHHHHHHHcCC---eEEEEECCCCCCHHHH
Confidence 42211 1234455666665 8999999999999985
No 106
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.65 E-value=2.9e-16 Score=159.22 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=100.3
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....+||+++|.+|+|||||+++|++..-.. +....++.+.....+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------------------~~~~t~~~~~~~~~~ 63 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------------------------------VHDLTIGVEFGARMV 63 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------------------CCSSEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCC---------------------------------CCCCcccceeEEEEE
Confidence 44567999999999999999999998721110 001112222222233
Q ss_pred ecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCC
Q psy3751 400 NTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMD 475 (967)
Q Consensus 400 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D 475 (967)
..++ ..+.++||||+++|...+...++.+|++|+|+|+++.. ........+..+... ...++++|+||+|
T Consensus 64 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~l~~i~~~~~~~~piilv~nK~D 137 (191)
T 2a5j_A 64 NIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE------TFNHLTSWLEDARQHSSSNMVIMLIGNKSD 137 (191)
T ss_dssp EETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHH------HHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 3443 57899999999988776677788999999999998711 112223333333332 2345999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+..+.. .++.+.+.+..++ +++++||++|.|++++
T Consensus 138 l~~~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 138 LESRRDVK----REEGEAFAREHGL---IFMETSAKTACNVEEA 174 (191)
T ss_dssp CGGGCCSC----HHHHHHHHHHHTC---EEEEECTTTCTTHHHH
T ss_pred cCCccccC----HHHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 97532211 1223445555665 8999999999999985
No 107
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.65 E-value=1.1e-15 Score=156.41 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=102.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+++|++..-.. . .....|.+.......+..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~--~~~t~~~~~~~~~~~~~~ 54 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTP-----------------------------A--FVSTVGIDFKVKTIYRND 54 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCS-----------------------------C--CCCCCSEEEEEEEEEETT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------C--cCCccceeEEEEEEEECC
Confidence 356899999999999999999998721100 0 000113333222222333
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~~~ 478 (967)
....+.+|||||+++|...+...+..+|++|+|+|+++ ... ......+..+... ...++++|+||+|+.+
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN-------EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred eEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 34578999999999999888888999999999999987 211 1222333333332 2345999999999976
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
..... .+..+.+.+.+++ +++++||++|.|++++.
T Consensus 128 ~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 128 ERVVS----SERGRQLADHLGF---EFFEASAKDNINVKQTF 162 (203)
T ss_dssp SCCSC----HHHHHHHHHHHTC---EEEECBTTTTBSSHHHH
T ss_pred ccccC----HHHHHHHHHHCCC---eEEEEECCCCCCHHHHH
Confidence 43211 1233445556665 89999999999999854
No 108
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.64 E-value=4.1e-16 Score=160.97 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=100.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+++|++..- ..+...+++.+.....+..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 64 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF---------------------------------NPSFITTIGIDFKIKTVDI 64 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC---------------------------------CCSSSCCCSCCEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC---------------------------------CcccCCcccceEEEEEEEE
Confidence 4568999999999999999999986211 0111123333444444555
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCcc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLI 477 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~ 477 (967)
++ ..+.||||||+++|...+...+..+|++|+|+|+++.. ........+..+... .-.++++|+||+|+.
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 65 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDER------TFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHH------HHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 55 57899999999988777777788999999999998711 111223333333322 124599999999995
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
... . ..++...+.+.+++ +++++||++|.|++++.
T Consensus 139 ~~~-~----~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 139 TRV-V----TADQGEALAKELGI---PFIESSAKNDDNVNEIF 173 (213)
T ss_dssp SCC-S----CHHHHHHHHHHHTC---CEEECBTTTTBSSHHHH
T ss_pred ccc-c----CHHHHHHHHHHcCC---EEEEEeCCCCCCHHHHH
Confidence 321 1 11223445555565 79999999999999853
No 109
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.64 E-value=6.5e-16 Score=156.42 Aligned_cols=152 Identities=21% Similarity=0.276 Sum_probs=100.0
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
...+.++|+++|.+|+|||||+++|++..... .....|+......+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------------------------~~~~~t~~~~~~~~ 62 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQS----------------------------------QNILPTIGFSIEKF 62 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCC----------------------------------SSCCCCSSEEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCC----------------------------------CCcCCccceeEEEE
Confidence 34567899999999999999999998621000 00112333334455
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCc-hhhHHHHHHHHHH------cCCCeEEEEEe
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL-LTQTKRHSIIAHL------LRIKHIIIAVN 472 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~-~~~t~~~~~~~~~------~~~~~iivviN 472 (967)
..++..+.++||||+++|...+...+..+|++|+|+|+++ .. .....+.+..... .++ ++++|+|
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~-piilv~n 134 (190)
T 2h57_A 63 KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD-------RLRMVVAKEELDTLLNHPDIKHRRI-PILFFAN 134 (190)
T ss_dssp ECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTC-------HHHHHHHHHHHHHHHHSTTTTTSCC-CEEEEEE
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC-------HHHHHHHHHHHHHHHhChhhccCCC-eEEEEEe
Confidence 6667899999999999988777788899999999999987 21 1222233322222 244 4999999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHH--HHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFA--EDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+.+... .+++ .+.+ ..+.....+++++||++|.|++++
T Consensus 135 K~Dl~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 135 KMDLRDAVT--SVKV----SQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp CTTSTTCCC--HHHH----HHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred CcCcccCCC--HHHH----HHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 999976321 1222 2223 222223468999999999999984
No 110
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=160.86 Aligned_cols=158 Identities=19% Similarity=0.170 Sum_probs=96.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..+..++|+++|.+|+|||||+++|++..-.- . .....|.+.......+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~--~~~t~~~~~~~~~~~~ 72 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-----------------------------N--ISATLGVDFQMKTLIV 72 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC-----------------------------------------CEEEEEEE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------------c--CCCCccceeEEEEEEE
Confidence 34567999999999999999999998721100 0 0000122222222222
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc---CCCeEEEEEecCC
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL---RIKHIIIAVNKMD 475 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~---~~~~iivviNK~D 475 (967)
......+.|+||||+++|...+...+..+|++|+|+|+++ ... ......+..+... ++| +++|+||+|
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~-------~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~D 144 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC-------EKSFLNIREWVDMIEDAAHETVP-IMLVGNKAD 144 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHC---CC-EEEEEECGG
T ss_pred CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC-------hHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcc
Confidence 2233568999999999998888888899999999999987 211 1122233333322 444 999999999
Q ss_pred ccCcCHH-HHHH-HHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQI-FYKR-IVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~-~~~~-i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+.... .... ..+....+.+..++ +++++||++|.|++++
T Consensus 145 l~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~SA~~g~gv~el 187 (199)
T 2p5s_A 145 IRDTAATEGQKCVPGHFGEKLAMTYGA---LFCETSAKDGSNIVEA 187 (199)
T ss_dssp GHHHHHHTTCCCCCHHHHHHHHHHHTC---EEEECCTTTCTTHHHH
T ss_pred cccccccccccccCHHHHHHHHHHcCC---eEEEeeCCCCCCHHHH
Confidence 8631100 0000 12233445555565 8999999999999984
No 111
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=99.64 E-value=6.3e-16 Score=175.69 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=130.1
Q ss_pred HHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCC-CCCCeeEEEeeCCCCC--hhhHHHHHHHHHHhCCcEEEEecchh
Q psy3751 29 IMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRP-SRFPFPMVHIDTGHNF--PEVISFRDNCISKLGETLIVRSVEDS 105 (967)
Q Consensus 29 ~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~-~~~~i~~v~idtg~~~--pet~~~~~~~~~~~gi~i~~~~~~~~ 105 (967)
.+.+++...++++|++|||+||+||||++.++... .+.++.++|+|+|... ++..++++++|+++|+++++.+.+..
T Consensus 5 ~l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~~ 84 (433)
T 1ni5_A 5 TLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLA 84 (433)
T ss_dssp HHHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred hHHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 35677888899999999999999999999997654 4678999999999863 34678999999999999999876532
Q ss_pred hhhcccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccC
Q psy3751 106 IMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRV 185 (967)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 185 (967)
..+...+..|..+|+..+.+.++ +.+.+++||+.||..++..+++.++....+... +.|.. +
T Consensus 85 ------~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD~aEt~L~~l~RG~g~~gL~g---m~~~~-~------ 146 (433)
T 1ni5_A 85 ------QEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCETFLLALKRGSGPAGLSA---MAEVS-E------ 146 (433)
T ss_dssp ------CSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHHHHHHHHHHTTTCCTTGGGC---CCSEE-E------
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchHHHHHHHHHHHcCCCcccccC---CCCcc-c------
Confidence 11233445565566666666554 478999999999999998888877655332211 11110 0
Q ss_pred CCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 186 HPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 186 ~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
.++...++||++|+++||++|++.+|+|+....
T Consensus 147 -~~~~~iiRPLl~~~k~eI~~y~~~~gl~~~~D~ 179 (433)
T 1ni5_A 147 -FAGTRLIRPLLARTRGELVQWARQYDLRWIEDE 179 (433)
T ss_dssp -ETTEEEECGGGSCCHHHHHHHHHHTTCCCBCCC
T ss_pred -cCCceEEccCccCCHHHHHHHHHHcCCCeEECC
Confidence 023467899999999999999999999987655
No 112
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.64 E-value=2.5e-16 Score=155.61 Aligned_cols=145 Identities=22% Similarity=0.256 Sum_probs=93.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|++|+|||||+++|++..... ....|+|++.....+..++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~ 49 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYI---------------------------------GNWPGVTVEKKEGEFEYNG 49 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSC---------------------------------C-----CCCCCEEEEEETT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeec---------------------------------cCCCCcceeeeEEEEEECC
Confidence 4789999999999999999998621100 1113445554444566667
Q ss_pred ceEEEeeChhhHHHH-----HHH-Hhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 404 RKFIIADTPGHEQYT-----RNM-ITGA--STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 404 ~~~~liDtpG~~~~~-----~~~-~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
..+.++||||+.+|. ..+ ...+ ..+|++++|+|++. . .+....+..+...+.| +|+|.||+|
T Consensus 50 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~-------~--~~~~~~~~~~~~~~~p-~ilv~nK~D 119 (165)
T 2wji_A 50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA-------L--ERNLYLTLQLMEMGAN-LLLALNKMD 119 (165)
T ss_dssp EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC-------H--HHHHHHHHHHHHTTCC-EEEEEECHH
T ss_pred cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc-------h--hHhHHHHHHHHhcCCC-EEEEEEchH
Confidence 889999999977652 111 2222 37999999999976 1 1222333334445666 899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..... +..+.+.+.+.++. +++++||++|.|++++
T Consensus 120 l~~~~~-----~~~~~~~~~~~~~~---~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 120 LAKSLG-----IEIDVDKLEKILGV---KVVPLSAAKKMGIEEL 155 (165)
T ss_dssp HHHHTT-----CCCCHHHHHHHHTS---CEEECBGGGTBSHHHH
T ss_pred hccccC-----hhhHHHHHHHHhCC---CEEEEEcCCCCCHHHH
Confidence 864211 00112334445554 8899999999999984
No 113
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.64 E-value=6.2e-16 Score=155.07 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=88.0
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+..++|+++|++|+|||||+++|++..-. .+....++.+.....+.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~ 51 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYS---------------------------------QQYKATIGADFLTKEVT 51 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCC---------------------------------TTC---CCCSCEEEEEC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCC---------------------------------cccCCccceEEEEEEEE
Confidence 456799999999999999999999872110 01111222233333344
Q ss_pred cC---CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH-H------cCCCeEEEE
Q psy3751 401 TP---KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH-L------LRIKHIIIA 470 (967)
Q Consensus 401 ~~---~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~-~------~~~~~iivv 470 (967)
.+ ...+.++||||+++|...+...+..+|++|+|+|+++.. ........+.... . .++ ++++|
T Consensus 52 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv 124 (182)
T 1ky3_A 52 VDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNAS------SFENIKSWRDEFLVHANVNSPETF-PFVIL 124 (182)
T ss_dssp CSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHH------HHHTHHHHHHHHHHHHCCSCTTTC-CEEEE
T ss_pred EcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChH------HHHHHHHHHHHHHHHhcccCcCCC-cEEEE
Confidence 33 357899999999999888888889999999999998721 0111222222221 1 234 49999
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+||+|+.+..... ..++...+.+... ..+++++||++|.|++++
T Consensus 125 ~nK~Dl~~~~~~v---~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l 168 (182)
T 1ky3_A 125 GNKIDAEESKKIV---SEKSAQELAKSLG--DIPLFLTSAKNAINVDTA 168 (182)
T ss_dssp EECTTSCGGGCCS---CHHHHHHHHHHTT--SCCEEEEBTTTTBSHHHH
T ss_pred EECCccccccccC---CHHHHHHHHHhcC--CCeEEEEecCCCCCHHHH
Confidence 9999996421100 0122333443222 358999999999999985
No 114
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.64 E-value=9.2e-16 Score=152.78 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=89.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|++|+|||||+++|++..-.. .....|.+.......+...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 50 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD--------------------------------LHEQLGEDVYERTLTVDGE 50 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-------------------------------------CCCSSSSEEEEEEEETTE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc--------------------------------ccCccccceeEEEEEECCE
Confidence 56899999999999999999998621100 0001233322222222222
Q ss_pred CceEEEeeChhhHHH--HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc----CCCeEEEEEecCCc
Q psy3751 403 KRKFIIADTPGHEQY--TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL----RIKHIIIAVNKMDL 476 (967)
Q Consensus 403 ~~~~~liDtpG~~~~--~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~----~~~~iivviNK~D~ 476 (967)
...+.++||||++.+ .......++.+|++++|+|+++.. ......+.+..+... ++| +++|+||+|+
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl 123 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG------SFESASELRIQLRRTHQADHVP-IILVGNKADL 123 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHH------HHHHHHHHHHHHHHCC----CC-EEEEEECTTC
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhhccCCCC-EEEEEEChhh
Confidence 346889999999874 333344567899999999998711 111222233333332 444 9999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+... ++.+.+....++ +++++||++|.|++++
T Consensus 124 ~~~~~v~~----~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 124 ARCREVSV----EEGRACAVVFDC---KFIETSATLQHNVAEL 159 (175)
T ss_dssp TTTCCSCH----HHHHHHHHHHTS---EEEECBTTTTBSHHHH
T ss_pred ccccccCH----HHHHHHHHHcCC---eEEEEecCCCCCHHHH
Confidence 76432111 123344455554 8999999999999985
No 115
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.64 E-value=6.7e-16 Score=158.52 Aligned_cols=152 Identities=22% Similarity=0.223 Sum_probs=101.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+++|++..- ..+....++.+.....+..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~ 52 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTY---------------------------------TNDYISTIGVDFKIKTVEL 52 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCC---------------------------------CTTCCCSSCCCEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCcccceeEEEEEEE
Confidence 4568999999999999999999987211 0111122333333334444
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~ 476 (967)
++ ..+.+|||||+++|...+...+..+|++|+|+|+++ ... ......+..+... ...++++|+||+|+
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~-------~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (206)
T 2bcg_Y 53 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD-------QESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125 (206)
T ss_dssp TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 44 478999999999988777778899999999999987 211 1122223333322 22458999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
.+..+... ++...+.+..++ +++++||++|.|++++.
T Consensus 126 ~~~~~~~~----~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 126 KDKRVVEY----DVAKEFADANKM---PFLETSALDSTNVEDAF 162 (206)
T ss_dssp TTTCCSCH----HHHHHHHHHTTC---CEEECCTTTCTTHHHHH
T ss_pred ccccccCH----HHHHHHHHHcCC---eEEEEeCCCCCCHHHHH
Confidence 76432111 223445555564 89999999999999864
No 116
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.64 E-value=1e-15 Score=153.67 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=98.2
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
...+.++|+++|.+|+|||||+++|++. .+. . ...|+......+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~------------------------~~~--~----------~~~t~~~~~~~~ 60 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN------------------------EVV--H----------TSPTIGSNVEEI 60 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT------------------------SCE--E----------EECCSSSSCEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC------------------------CCC--c----------cCCcCceeeEEE
Confidence 3456789999999999999999999861 110 0 011222223345
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDL 476 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~ 476 (967)
..++..+.++||||+++|...+...+..+|++|+|+|+++.. .+ ....+.+..... ..-.++++|+||+|+
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE-----RI-SVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp EETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT-----TH-HHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH-----HH-HHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 556789999999999998877778889999999999998721 12 223333332222 133459999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+.... +++.+.+. +........+++++||++|.|++++
T Consensus 135 ~~~~~~--~~i~~~~~--~~~~~~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 135 KECMTV--AEISQFLK--LTSIKDHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp TTCCCH--HHHHHHTT--GGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred ccCCCH--HHHHHHhC--cccccCCceEEEEccCCCCcCHHHH
Confidence 763211 12222111 1111112458999999999999984
No 117
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.64 E-value=7.1e-16 Score=155.96 Aligned_cols=153 Identities=21% Similarity=0.205 Sum_probs=97.1
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
..+.+||+++|.+|+|||||+++|++..-. .+....++.+.....+.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~ 63 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFP---------------------------------DRTEATIGVDFRERAVD 63 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC---------------------------------SSCCCCCSCCEEEEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCC---------------------------------CCCCCCcceEEEEEEEE
Confidence 356799999999999999999999862110 01112222233333344
Q ss_pred cCC--ceEEEeeChhhHHHH-HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHc--CCCeEEEEEecC
Q psy3751 401 TPK--RKFIIADTPGHEQYT-RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLL--RIKHIIIAVNKM 474 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~-~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~--~~~~iivviNK~ 474 (967)
.++ ..+.++||||+++|. ......++.+|++|+|+|+++.. ........+..+ ... .-.++++|+||+
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~------s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 137 (189)
T 1z06_A 64 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA------SFHSLPAWIEECKQHLLANDIPRILVGNKC 137 (189)
T ss_dssp ETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHH------HHHTHHHHHHHHHHHCCCSCCCEEEEEECT
T ss_pred ECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHH------HHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 444 578999999999987 55666678999999999998711 001122222222 222 223499999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCC---Cccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNG---DNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g---~gi~~l 519 (967)
|+.+..+.. .++.+.+.+..++ +++++||++| .|+.++
T Consensus 138 Dl~~~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 138 DLRSAIQVP----TDLAQKFADTHSM---PLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp TCGGGCCSC----HHHHHHHHHHTTC---CEEECCSSSGGGGSCHHHH
T ss_pred cccccceeC----HHHHHHHHHHcCC---EEEEEeCCcCCcccCHHHH
Confidence 997542211 1223445555665 8999999999 777763
No 118
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.63 E-value=4.7e-16 Score=158.92 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=97.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|++..-. .+....++.+.....+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~~ 69 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK---------------------------------QDSNHTIGVEFGSRVVNV 69 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---------------------------------------------CCEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---------------------------------ccCCCcccceeEEEEEEE
Confidence 46799999999999999999999862110 011112222333333444
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~ 476 (967)
++ ..+.|+||||+++|...+...+..+|++|+|+|+++ ... ......+..+... .-.++++|+||+|+
T Consensus 70 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 142 (200)
T 2o52_A 70 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS-------RETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142 (200)
T ss_dssp TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGG
T ss_pred CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCc
Confidence 44 578999999999887666677889999999999987 211 1122223222221 22459999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
.+..+... .+...+.+..++ +++++||++|.|++++.
T Consensus 143 ~~~~~v~~----~~~~~~~~~~~~---~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 143 DPEREVTF----LEASRFAQENEL---MFLETSALTGENVEEAF 179 (200)
T ss_dssp GGGCCSCH----HHHHHHHHHTTC---EEEEECTTTCTTHHHHH
T ss_pred ccccccCH----HHHHHHHHHcCC---EEEEEeCCCCCCHHHHH
Confidence 75322111 223445555554 89999999999999853
No 119
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.63 E-value=1.7e-15 Score=153.03 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=100.4
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..++.++|+++|++|+|||||+++|++.. +. .+ ...|+...+..+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~------------------------~~---------~~--~~~t~~~~~~~~ 62 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQ------------------------FN---------ED--MIPTVGFNMRKI 62 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSC------------------------CC---------CS--CCCCCSEEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCC------------------------CC---------Cc--cCCCCceeEEEE
Confidence 34567999999999999999999998621 10 00 011222333445
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecCC
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKMD 475 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~D 475 (967)
...+..+.+|||||+++|...+...+..+|++|+|+|+++.. .+ ....+.+..... .+++ +++|+||+|
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~-----s~-~~~~~~~~~~~~~~~~~~~p-iilv~NK~D 135 (188)
T 1zd9_A 63 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE-----KI-EASKNELHNLLDKPQLQGIP-VLVLGNKRD 135 (188)
T ss_dssp EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG-----GH-HHHHHHHHHHHTCGGGTTCC-EEEEEECTT
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH-----HH-HHHHHHHHHHHhCcccCCCC-EEEEEECCC
Confidence 667788999999999999888888889999999999998721 11 222233322221 3444 999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+.... +++.+.+. .........+++++||++|.|++++
T Consensus 136 l~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 136 LPGALDE--KELIEKMN--LSAIQDREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp STTCCCH--HHHHHHTT--GGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred CccCCCH--HHHHHHhC--hhhhccCCeeEEEEECCCCCCHHHH
Confidence 9864211 12222111 0111112458899999999999984
No 120
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.63 E-value=7.9e-16 Score=158.01 Aligned_cols=152 Identities=19% Similarity=0.176 Sum_probs=98.0
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|++|+|||||+++|++..-. ......++.+.....+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~ 51 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFS---------------------------------NQYKATIGADFLTKEVM 51 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCC---------------------------------SSCCCCCSEEEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCC---------------------------------CCCCCcccceEEEEEEE
Confidence 456789999999999999999999872110 01112233344334444
Q ss_pred cCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHH-HHHH------cCCCeEEEE
Q psy3751 401 TPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSI-IAHL------LRIKHIIIA 470 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~-~~~~------~~~~~iivv 470 (967)
.++ ..+.||||||+++|...+...+..+|++|+|+|+++ ... ......+. +... .++| +++|
T Consensus 52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv 123 (207)
T 1vg8_A 52 VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA-------PNTFKTLDSWRDEFLIQASPRDPENFP-FVVL 123 (207)
T ss_dssp SSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEE
T ss_pred ECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC-------HHHHHHHHHHHHHHHHhcccccCCCCc-EEEE
Confidence 443 578999999999987777777899999999999987 211 11112221 1111 2444 8999
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+||+|+.+... . .++...+.+.. ...+++++||++|.|++++.
T Consensus 124 ~nK~Dl~~~~~-~----~~~~~~~~~~~--~~~~~~~~Sa~~g~gi~~l~ 166 (207)
T 1vg8_A 124 GNKIDLENRQV-A----TKRAQAWCYSK--NNIPYFETSAKEAINVEQAF 166 (207)
T ss_dssp EECTTSSCCCS-C----HHHHHHHHHHT--TSCCEEECBTTTTBSHHHHH
T ss_pred EECCCCccccc-C----HHHHHHHHHhc--CCceEEEEeCCCCCCHHHHH
Confidence 99999974221 1 12233333321 23489999999999999853
No 121
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.63 E-value=6.6e-16 Score=167.70 Aligned_cols=150 Identities=20% Similarity=0.237 Sum_probs=99.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+++|++|+|||||+|+|++..-. ...+. .+.|.+.....+..+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~--------------------------i~s~~------~~tTr~~~~gi~~~~ 54 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS--------------------------ITSRK------AQTTRHRIVGIHTEG 54 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE--------------------------ECCCC------SSCCSSCEEEEEEET
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc--------------------------ccCCC------CCcceeeEEEEEEEC
Confidence 3457999999999999999999973110 11111 112222112225556
Q ss_pred CceEEEeeChhhH-HH--------HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 403 KRKFIIADTPGHE-QY--------TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 403 ~~~~~liDtpG~~-~~--------~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
+.+++++||||+. .. ...+..++..+|++++|+|+++ +..++...+..+...+.| +|+|+||
T Consensus 55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--------~~~~~~~i~~~l~~~~~P-~ilvlNK 125 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR--------WTPDDEMVLNKLREGKAP-VILAVNK 125 (301)
T ss_dssp TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC--------CCHHHHHHHHHHHSSSSC-EEEEEES
T ss_pred CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 7889999999986 32 2223456788999999999864 234555555555545666 8888999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+... ... +.+.+..+.+.+++ ..++|+||++|.|++++
T Consensus 126 ~D~~~~-~~~---~~~~l~~l~~~~~~--~~~i~iSA~~g~~v~~l 165 (301)
T 1ega_A 126 VDNVQE-KAD---LLPHLQFLASQMNF--LDIVPISAETGLNVDTI 165 (301)
T ss_dssp TTTCCC-HHH---HHHHHHHHHTTSCC--SEEEECCTTTTTTHHHH
T ss_pred cccCcc-HHH---HHHHHHHHHHhcCc--CceEEEECCCCCCHHHH
Confidence 999852 222 33444555555554 36899999999999984
No 122
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.63 E-value=2e-15 Score=155.95 Aligned_cols=153 Identities=25% Similarity=0.290 Sum_probs=92.2
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+..++|+++|++|+|||||+++|++.. +. . ....++.+. ..+.
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~------------------------~~-----~-----~~~~~~~~~--~~~~ 47 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQ------------------------YR-----D-----TQTSITDSS--AIYK 47 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSC------------------------CC-----C-----BCCCCSCEE--EEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC------------------------cc-----c-----ccCCcceee--EEEE
Confidence 3456899999999999999999999721 10 0 001111121 2244
Q ss_pred cC---CceEEEeeChhhHHHHH-HHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH----HHH---cC-CCeEE
Q psy3751 401 TP---KRKFIIADTPGHEQYTR-NMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSII----AHL---LR-IKHII 468 (967)
Q Consensus 401 ~~---~~~~~liDtpG~~~~~~-~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~----~~~---~~-~~~ii 468 (967)
.+ +..+.+|||||+++|.. .+...+..+|++|+|+|+++ ...+..+.... ... .. -.+++
T Consensus 48 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~pii 119 (214)
T 2fh5_B 48 VNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA--------FQREVKDVAEFLYQVLIDSMALKNSPSLL 119 (214)
T ss_dssp CSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT--------HHHHHHHHHHHHHHHHHHHHTSTTCCEEE
T ss_pred ecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC--------cCHHHHHHHHHHHHHHhhhhhcccCCCEE
Confidence 44 56799999999999987 44455789999999999975 11112222111 111 11 24599
Q ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHH---------------------cC-------C----ccceEEeccccCC---
Q psy3751 469 IAVNKMDLINYNQIFYKRIVYAYKKFAED---------------------IH-------F----QNINTIPISALNG--- 513 (967)
Q Consensus 469 vviNK~D~~~~~~~~~~~i~~~~~~~~~~---------------------~~-------~----~~~~ii~iSa~~g--- 513 (967)
+|+||+|+.+... .+.+.+.+...+.. .+ + ..++++++||++|
T Consensus 120 lv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~ 197 (214)
T 2fh5_B 120 IACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGD 197 (214)
T ss_dssp EEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----
T ss_pred EEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcc
Confidence 9999999986432 23333444433331 11 0 0568999999999
Q ss_pred ---Cccccc
Q psy3751 514 ---DNIISA 519 (967)
Q Consensus 514 ---~gi~~l 519 (967)
.|++++
T Consensus 198 ~~~~gv~~l 206 (214)
T 2fh5_B 198 TGSADIQDL 206 (214)
T ss_dssp --CCBCHHH
T ss_pred ccccChHHH
Confidence 999884
No 123
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.63 E-value=9.8e-16 Score=155.89 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=100.1
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeecee---
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYR--- 397 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--- 397 (967)
....+||+++|++|+|||||++.|.+..... ..+. +.....+ ...|+...+.
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~-------------~~~~----------~~~~~~~--~~~t~~~~~~~~~ 65 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEG-------------RKGE----------MVSLATE--DERTLFFDFLPLD 65 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGG-------------GBCC----------CEEEECS--SCEEEEEEECCSS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhcccc-------------cccc----------ccccccc--cccceeeeecccc
Confidence 3467899999999999999998776521100 0000 0000000 1122222222
Q ss_pred --eeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH----HHHc----CCCeE
Q psy3751 398 --YFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSII----AHLL----RIKHI 467 (967)
Q Consensus 398 --~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~----~~~~----~~~~i 467 (967)
.+......+.++||||+++|.......++.+|++|+|+|+++ +...+..+.+.. +... .-.++
T Consensus 66 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~-------~~~~~~~~s~~~l~~~l~~~~~~~~~~pi 138 (198)
T 3t1o_A 66 IGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-------NRLRANAESMRNMRENLAEYGLTLDDVPI 138 (198)
T ss_dssp CCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCG-------GGHHHHHHHHHHHHHHHHHTTCCTTSSCE
T ss_pred cccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCc-------chhhHhHHHHHHHHHHHHhhccccCCCCE
Confidence 222234578999999999998888888999999999999986 433333333222 2221 23449
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
++|+||+|+.+.. ..++++++++..++ .+++++||++|.|++++
T Consensus 139 ilv~NK~Dl~~~~------~~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 139 VIQVNKRDLPDAL------PVEMVRAVVDPEGK--FPVLEAVATEGKGVFET 182 (198)
T ss_dssp EEEEECTTSTTCC------CHHHHHHHHCTTCC--SCEEECBGGGTBTHHHH
T ss_pred EEEEEchhccccc------CHHHHHHHHHhcCC--ceEEEEecCCCcCHHHH
Confidence 9999999997641 12334555655554 27899999999999985
No 124
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.63 E-value=9.9e-16 Score=153.91 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=97.7
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
...+.+||+++|++|+|||||+++|++..-. .+....++... ...+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~---------------------------------~~~~~t~~~~~-~~~~ 59 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFV---------------------------------DDYDPTIEDSY-LKHT 59 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------SCCCTTCCEEE-EEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCC---------------------------------CCCCCCcccee-EEEE
Confidence 3457799999999999999999999862110 00001111111 2223
Q ss_pred ecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-H---HcCCCeEEEEEec
Q psy3751 400 NTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-H---LLRIKHIIIAVNK 473 (967)
Q Consensus 400 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~---~~~~~~iivviNK 473 (967)
..++ ..+.++||||+++|.......++.+|++++|+|+++.. .+ ......+... . ..++| +++|+||
T Consensus 60 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~p-~ilv~nK 132 (183)
T 3kkq_A 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA-----SF-EHVDRFHQLILRVKDRESFP-MILVANK 132 (183)
T ss_dssp EETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH-----HH-HTHHHHHHHHHHHHTSSCCC-EEEEEEC
T ss_pred EeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCCc-EEEEEEC
Confidence 3344 34667999999988777777788999999999998721 01 1112222211 1 23444 9999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEecccc-CCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISAL-NGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~-~g~gi~~l 519 (967)
+|+.+..+.. .++.+.+.+.++. +++++||+ +|.|++++
T Consensus 133 ~Dl~~~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 133 VDLMHLRKVT----RDQGKEMATKYNI---PYIETSAKDPPLNVDKT 172 (183)
T ss_dssp TTCSTTCCSC----HHHHHHHHHHHTC---CEEEEBCSSSCBSHHHH
T ss_pred CCchhccCcC----HHHHHHHHHHhCC---eEEEeccCCCCCCHHHH
Confidence 9987532211 1234455666664 89999999 99999985
No 125
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=155.75 Aligned_cols=154 Identities=20% Similarity=0.184 Sum_probs=101.2
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+..++|+++|++|+|||||+++|++..-.. . .....|.+.......+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-----------------------------~--~~~t~~~~~~~~~~~~~ 70 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSH-----------------------------D--SRTTIGVEFSTRTVMLG 70 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCS-----------------------------S--CCCCSSEEEEEEEEEET
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------C--CCCccceeEEEEEEEEC
Confidence 4567899999999999999999999722110 0 00011222222222233
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCcc
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDLI 477 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~~ 477 (967)
.....+.|+||||+++|...+...+..+|++|+|+|+++ ... ......+..+... .-.++++|+||+|+.
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~-------~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK-------HQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC-------HHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 344678999999999887777777899999999999987 211 1223333333322 134599999999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+.. .++.+.+.+..++ +++++||++|.|++++
T Consensus 144 ~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 144 QAREVP----TEEARMFAENNGL---LFLETSALDSTNVELA 178 (193)
T ss_dssp GGCCSC----HHHHHHHHHHTTC---EEEEECTTTCTTHHHH
T ss_pred cccccC----HHHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 542211 1233445555554 8999999999999985
No 126
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.63 E-value=1.8e-15 Score=152.49 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=99.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
++.++|+++|++|+|||||+++|++.. . .. ...|+......+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~---------------------------~~-------~~~t~~~~~~~~~~ 59 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--V---------------------------DT-------ISPTLGFNIKTLEH 59 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--C---------------------------SS-------CCCCSSEEEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--C---------------------------Cc-------ccccCccceEEEEE
Confidence 467899999999999999999998622 0 00 00122222334555
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc---CCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL---RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~---~~~~iivviNK~D~~~ 478 (967)
++..+.++||||+++|...+...+..+|++++|+|++++. . .....+.+...... .-.++++|+||+|+.+
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----s-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ-----R-MQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG-----G-HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH-----H-HHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 6788999999999999888888889999999999998721 1 12222333222221 2345999999999976
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .+++.+.+. +........+++++||++|.|++++
T Consensus 134 ~~~--~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 134 ALS--CNAIQEALE--LDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp CCC--HHHHHHHTT--GGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred CCC--HHHHHHHhC--hhhccCCceEEEEeeCCCCCCHHHH
Confidence 422 122222111 0111122458999999999999984
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.63 E-value=2.6e-16 Score=168.76 Aligned_cols=147 Identities=20% Similarity=0.290 Sum_probs=102.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|++|+|||||+|+|++.. + ......|+|++.....+.+++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~------------------------~---------~~~~~~~~t~~~~~~~~~~~~ 49 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR------------------------Q---------HVGNWPGVTVEKKEGIMEYRE 49 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC------------------------E---------EEEECTTSSCEEEEEEEEETT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC------------------------c---------ccCCCCCeEEEeeEEEEEECC
Confidence 5799999999999999999998721 1 111235778877777788888
Q ss_pred ceEEEeeChhhHHHHH--------HHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 404 RKFIIADTPGHEQYTR--------NMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
..+.++||||+.+|.. ........+|++++|+|++. . .+....+..+...+..++++|+||+|
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~-------~--~~~~~~~~~~~~~~~~p~ilv~NK~D 120 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTC-------L--MRNLFLTLELFEMEVKNIILVLNKFD 120 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGG-------H--HHHHHHHHHHHHTTCCSEEEEEECHH
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCc-------c--hhhHHHHHHHHhcCCCCEEEEEEChh
Confidence 8999999999765432 11222367999999999987 2 23344444555567234999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+.+... +......+.+.+++ +++|+||++|.|+.++.
T Consensus 121 l~~~~~-----~~~~~~~l~~~lg~---~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 121 LLKKKG-----AKIDIKKMRKELGV---PVIPTNAKKGEGVEELK 157 (271)
T ss_dssp HHHHHT-----CCCCHHHHHHHHSS---CEEECBGGGTBTHHHHH
T ss_pred cCcccc-----cHHHHHHHHHHcCC---cEEEEEeCCCCCHHHHH
Confidence 864211 11113344555665 89999999999999853
No 128
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.63 E-value=3.3e-15 Score=147.00 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=96.5
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
+||+++|++|+|||||+++|++.. +. +. .-|+......+..++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~------------------------~~-----~~-------~~t~~~~~~~~~~~~~ 44 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE------------------------IV-----TT-------IPTIGFNVETVEYKNI 44 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC------------------------SS-----CC-------CCCSSCCEEEEECSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC------------------------cC-----cc-------cCcCceeEEEEEECCE
Confidence 479999999999999999998611 10 00 0122223334556678
Q ss_pred eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCccCcCH
Q psy3751 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 405 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~~~~~ 481 (967)
.+.++||||+++|...+...+..+|++++|+|+++.. .+ ....+.+..... ..-.++++|+||+|+.+...
T Consensus 45 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (164)
T 1r8s_A 45 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE-----RV-NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118 (164)
T ss_dssp EEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG-----GH-HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred EEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH-----HH-HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC
Confidence 8999999999999888888889999999999998721 11 122222222221 12345999999999976422
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 482 IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 482 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..++.+.+. .........+++++||++|.|++++
T Consensus 119 --~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 119 --AAEITDKLG--LHSLRHRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp --HHHHHHHTT--GGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred --HHHHHHHhC--cccccCccEEEEEcccCCCcCHHHH
Confidence 122222111 0111112457999999999999984
No 129
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.62 E-value=8.3e-16 Score=157.55 Aligned_cols=156 Identities=15% Similarity=0.102 Sum_probs=98.4
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
....+.+||+++|.+|+|||||+++|+...-.- ...+.+.+.....
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~----------------------------------~~~~t~~~~~~~~ 70 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPG----------------------------------EYIPTVFDNYSAN 70 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-----------------------------------CCCCSEEEEEEE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCC----------------------------------CcCCeecceeEEE
Confidence 344577999999999999999999998621100 0011111222222
Q ss_pred eecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHH--HHHHHHHHc--CCCeEEEEEe
Q psy3751 399 FNTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK--RHSIIAHLL--RIKHIIIAVN 472 (967)
Q Consensus 399 ~~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~--~~~~~~~~~--~~~~iivviN 472 (967)
+..++ ..+.++||||+++|.......+..+|++++|+|+++ ....+.. ..+..+... ++| +++|+|
T Consensus 71 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~p-iilv~n 142 (204)
T 4gzl_A 71 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS-------PASFENVRAKWYPEVRHHCPNTP-IILVGT 142 (204)
T ss_dssp EECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHCSSCC-EEEEEE
T ss_pred EEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHhCCCCC-EEEEEe
Confidence 33344 345699999999998888888899999999999987 2211111 223333333 444 999999
Q ss_pred cCCccCcCHHHHHHH---------HHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRI---------VYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+.+..+ ..+.+ .++...+.+.++. .+++++||++|.|++++
T Consensus 143 K~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l 195 (204)
T 4gzl_A 143 KLDLRDDKD-TIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKTV 195 (204)
T ss_dssp CHHHHTCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHH
T ss_pred chhhccchh-hhhhhhccccccccHHHHHHHHHhcCC--cEEEEeeCCCCCCHHHH
Confidence 999986432 11111 1234455566654 36999999999999984
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.62 E-value=1.9e-15 Score=173.32 Aligned_cols=149 Identities=25% Similarity=0.287 Sum_probs=88.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|++|+|||||+|+|++....+ .....|+|.+.....+..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~--------------------------------vs~~~gtT~d~~~~~i~~~ 279 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI--------------------------------VSHMPGTTRDYIEECFIHD 279 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--------------------------------------------------CEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc--------------------------------cCCCCCceEEEEEEEEEEC
Confidence 45789999999999999999998721111 1123467777777778888
Q ss_pred CceEEEeeChhhHHHHH--------HHHhhcccCCEEEEEEeCCCCCCCCCCCchh-hHHHHHHHHHHcCCCeEEEEEec
Q psy3751 403 KRKFIIADTPGHEQYTR--------NMITGASTADAVIILIDASKIKFNPSVNLLT-QTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~-~t~~~~~~~~~~~~~~iivviNK 473 (967)
+..+.||||||+.++.. .+...+..+|++|+|+|+++ +... +..+...+...+.-.++|+|+||
T Consensus 280 g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~-------~~s~~~~~~~~~~l~~l~~~piIvV~NK 352 (476)
T 3gee_A 280 KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGT-------ERLDDELTEIRELKAAHPAAKFLTVANK 352 (476)
T ss_dssp TEEEEEEC--------------------CCCSSCSEEEEEEETTT-------CSSGGGHHHHHHHHHHCTTSEEEEEEEC
T ss_pred CeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCC-------CcchhhhHHHHHHHHhcCCCCEEEEEEC
Confidence 89999999999876542 23456789999999999998 3222 22233334444445669999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+|+.+...... +.+.+. ++ .+++++||++|.|++++.
T Consensus 353 ~Dl~~~~~~~~-------~~l~~~-~~--~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 353 LDRAANADALI-------RAIADG-TG--TEVIGISALNGDGIDTLK 389 (476)
T ss_dssp TTSCTTTHHHH-------HHHHHH-HT--SCEEECBTTTTBSHHHHH
T ss_pred cCCCCccchhH-------HHHHhc-CC--CceEEEEECCCCCHHHHH
Confidence 99987654311 112221 22 378999999999999853
No 131
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.62 E-value=1.7e-15 Score=158.27 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=98.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|++. .+.. ....+.|.+.....+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~------------------------~~~~---------~~~~~~t~~~~~~~~~~ 73 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA------------------------NVDV---------QSYSFTTKNLYVGHFDH 73 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT------------------------CEEE---------ECC-----CEEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC------------------------CCcc---------CCCCCcceeeeeeeeec
Confidence 45689999999999999999999861 1110 01123455555555666
Q ss_pred CCceEEEeeChhh------HHH---HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEE
Q psy3751 402 PKRKFIIADTPGH------EQY---TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIA 470 (967)
Q Consensus 402 ~~~~~~liDtpG~------~~~---~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivv 470 (967)
++..+.||||||+ +.. ...+......+|++|+|+|+++... +. .....+.+..+... ++| +++|
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~-~~~~~~~~~~l~~~~~~~p-iilv 148 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LT-IKEQINLFYSIKSVFSNKS-IVIG 148 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SC-HHHHHHHHHHHHTCC-CCC-EEEE
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cc-hHHHHHHHHHHHHhhcCCc-EEEE
Confidence 6788999999998 331 1222333577899999999987211 01 12223333334333 444 9999
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+||+|+.+..+ ........+..+.+..+ ...+++++||++|.|++++.
T Consensus 149 ~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~ 196 (228)
T 2qu8_A 149 FNKIDKCNMDS-LSIDNKLLIKQILDNVK-NPIKFSSFSTLTGVGVEQAK 196 (228)
T ss_dssp EECGGGCC--C-CCHHHHHHHHHHHHHCC-SCEEEEECCTTTCTTHHHHH
T ss_pred EeCcccCCchh-hHHHHHHHHHHHHHhcC-CCceEEEEecccCCCHHHHH
Confidence 99999975321 11122334455555554 12489999999999999853
No 132
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.62 E-value=8.1e-16 Score=151.65 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=95.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|++|+|||||+++|++..-. .. ....++ +.....+..++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~----~~~~~~-~~~~~~~~~~~ 48 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI-----------------------------EK----YDPTIE-DFYRKEIEVDS 48 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------------SC----CCTTCC-EEEEEEEEETT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc-----------------------------cc----CCCCcc-eeEEEEEEECC
Confidence 589999999999999999999862110 00 000000 11112233333
Q ss_pred --ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHH-HHHH---cCCCeEEEEEecCCc
Q psy3751 404 --RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSI-IAHL---LRIKHIIIAVNKMDL 476 (967)
Q Consensus 404 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~-~~~~---~~~~~iivviNK~D~ 476 (967)
..+.++||||+++|.......+..+|++++|+|+++ ... ......+. +... .+.| +++|+||+|+
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 120 (167)
T 1kao_A 49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN-------QQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDL 120 (167)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcc
Confidence 458899999999988887788899999999999987 211 11222222 2222 2444 9999999998
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+.. ..+...+.+..++ +++++||++|.|++++
T Consensus 121 ~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 121 ESEREVS----SSEGRALAEEWGC---PFMETSAKSKTMVDEL 156 (167)
T ss_dssp GGGCCSC----HHHHHHHHHHHTS---CEEEECTTCHHHHHHH
T ss_pred cccccCC----HHHHHHHHHHhCC---CEEEecCCCCcCHHHH
Confidence 7533211 1223445555565 8999999999999984
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=2.2e-15 Score=172.98 Aligned_cols=145 Identities=22% Similarity=0.295 Sum_probs=101.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
.+|+++|.+|+|||||+|+|++....+ .+...|+|.+..+..+++++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~--------------------------------v~~~~g~T~d~~~~~~~~~~~ 49 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI--------------------------------VEDEEGVTRDPVQDTVEWYGK 49 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------------------------------------CCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce--------------------------------ecCCCCCccceeeEEEEECCe
Confidence 479999999999999999999722111 122357888888888888999
Q ss_pred eEEEeeChhhHH---------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 405 KFIIADTPGHEQ---------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 405 ~~~liDtpG~~~---------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
.+.+|||||... +...+..++..||++|+|+|++. +......+....++..+.+ +++|+||+|
T Consensus 50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~-------~~~~~d~~i~~~l~~~~~p-~ilv~NK~D 121 (439)
T 1mky_A 50 TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR-------GITKEDESLADFLRKSTVD-TILVANKAE 121 (439)
T ss_dssp EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT-------CCCHHHHHHHHHHHHHTCC-EEEEEESCC
T ss_pred EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCC-------CCCHHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 999999999542 45556777899999999999988 6655555555555556766 899999999
Q ss_pred ccCcCHHHHHHHHHHH-HHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAY-KKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+. . ..+. .++. .+++. +++++||++|.|+.++
T Consensus 122 ~~~~---~----~~~~~~~~~-~lg~~--~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 122 NLRE---F----EREVKPELY-SLGFG--EPIPVSAEHNINLDTM 156 (439)
T ss_dssp SHHH---H----HHHTHHHHG-GGSSC--SCEECBTTTTBSHHHH
T ss_pred Cccc---c----HHHHHHHHH-hcCCC--CEEEEeccCCCCHHHH
Confidence 8631 0 1112 2232 45553 5699999999999985
No 134
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.62 E-value=1.6e-15 Score=149.65 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=93.6
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|++|+|||||+++|++..-.. +..+ ..+.+. ...+..+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~----------------------------~~~~---t~~~~~---~~~~~~~ 48 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVE----------------------------DYEP---TKADSY---RKKVVLD 48 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------------------CCCT---TCCEEE---EEEEEET
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCC----------------------------CCCC---CcceEE---EEEEEEC
Confidence 45899999999999999999998721000 0000 001111 1122233
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcC--CCeEEEEEecCCcc
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLR--IKHIIIAVNKMDLI 477 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~--~~~iivviNK~D~~ 477 (967)
+ ..+.++||||+++|...+...+..+|++++|+|+++.. ........+..+ .... ..++++|+||+|+.
T Consensus 49 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 49 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME------SFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp TEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH------HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 3 47889999999999888888889999999999998711 011122222222 2111 24499999999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+.. .++...+.+..++ +++++||++|.|++++
T Consensus 123 ~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 123 DKRQVS----VEEAKNRADQWNV---NYVETSAKTRANVDKV 157 (168)
T ss_dssp GGCCSC----HHHHHHHHHHHTC---EEEECCTTTCTTHHHH
T ss_pred ccCccC----HHHHHHHHHHcCC---eEEEeCCCCCCCHHHH
Confidence 643211 1233445555565 8999999999999984
No 135
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.62 E-value=2.6e-15 Score=150.73 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=97.7
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|++. .+. .. ....|. ....+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~------------------------~~~--~~------~~t~g~----~~~~~~~ 57 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE------------------------DIS--HI------TPTQGF----NIKSVQS 57 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS------------------------CCE--EE------EEETTE----EEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC------------------------CCC--cc------cCcCCe----EEEEEEE
Confidence 45689999999999999999999861 110 00 001122 2233455
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HH--cCCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HL--LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~--~~~~~iivviNK~D~~~ 478 (967)
++..+.++||||++.|...+...+..+|++++|+|+++.. .+ ....+.+... .. ..-.++++|+||+|+.+
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK-----RF-EETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG-----GH-HHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH-----HH-HHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 6788999999999999888888889999999999998721 11 1222222222 11 12245999999999986
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.... +++.+.+. +........+++++||++|.|++++
T Consensus 132 ~~~~--~~~~~~~~--~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 132 AAPA--SEIAEGLN--LHTIRDRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp CCCH--HHHHHHTT--GGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred CCCH--HHHHHHhC--chhccCCceEEEEccCCCCCCHHHH
Confidence 4321 12221110 0111112458999999999999984
No 136
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.62 E-value=1.6e-15 Score=149.63 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=82.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.+||+++|.+|+|||||+++|++.... .. ....|.+.+. ...+....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~----------~~----------------------~~~~~~~~~~-~~~~~~~~ 48 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG----------PE----------------------AEAAGHTYDR-SIVVDGEE 48 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------------------------------------CEEEE-EEEETTEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc----------CC----------------------CCccccceEE-EEEECCEE
Confidence 578999999999999999999862110 00 0011222211 11222234
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc----CCCeEEEEEecCCccCc
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL----RIKHIIIAVNKMDLINY 479 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~----~~~~iivviNK~D~~~~ 479 (967)
..+.++||||++.|.......+..+|++++|+|+++.. ........+..+... ++| +++|+||+|+.+.
T Consensus 49 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 49 ASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG------SFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRS 121 (166)
T ss_dssp EEEEEEECC---------------CCEEEEEEETTCHH------HHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSS
T ss_pred EEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccc
Confidence 56889999999998877777889999999999998711 111222232223222 344 9999999999764
Q ss_pred CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+... ++.+.+....+. +++++||++|.|++++
T Consensus 122 ~~~~~----~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 154 (166)
T 3q72_A 122 REVSV----DEGRACAVVFDC---KFIETSAALHHNVQAL 154 (166)
T ss_dssp CCSCH----HHHHHHHHHTTC---EEEECBGGGTBSHHHH
T ss_pred cccCH----HHHHHHHHHhCC---cEEEeccCCCCCHHHH
Confidence 32111 223344555554 8999999999999985
No 137
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.4e-16 Score=160.83 Aligned_cols=151 Identities=24% Similarity=0.227 Sum_probs=97.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+++|++..-.. +....++.+.....+..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~ 57 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM---------------------------------DSKSTIGVEFATRTLEI 57 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC---------------------------------------CCSEEEEEEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC---------------------------------CCCCcccceeEEEEEEE
Confidence 457899999999999999999998722110 11112222233333444
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~ 476 (967)
++ ..+.||||||+++|...+...++.+|++|+|+|+++ ... ....+.+..+... .-.++++|+||+|+
T Consensus 58 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~-------~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 130 (223)
T 3cpj_B 58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK-------SSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130 (223)
T ss_dssp TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC-------HHHHHHHHHHHHHHHHHCC--CEEEEEECCGGG
T ss_pred CCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 44 578999999999987777778899999999999987 221 1222233333332 12458999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+.. .++...+.+..++ +++++||++|.|++++
T Consensus 131 ~~~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 131 AHLRAVP----TEESKTFAQENQL---LFTETSALNSENVDKA 166 (223)
T ss_dssp GGGCCSC----HHHHHHHHHHTTC---EEEECCCC-CCCHHHH
T ss_pred ccccccC----HHHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 7532211 1223445555554 8999999999999985
No 138
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.62 E-value=3.9e-15 Score=162.33 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=106.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec-
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT- 401 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~- 401 (967)
..+||+++|.+|+|||||+++|++..... .....|.|++..+..+..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~--------------------------------~~~~~~~Ti~~~~~~~~~~ 49 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF--------------------------------DTRRLGATIDVEHSHLRFL 49 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTG--------------------------------GGGGCCCCCSEEEEEEEET
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc--------------------------------cccCcCCccceEEEEEEeC
Confidence 35789999999999999999998721111 112346677666666654
Q ss_pred CCceEEEeeChhhHHHHHH-----HHhhcccCCEEEEEEeCCCCCCCCCCCchhhHH----HHHHHHHH-cCCCeEEEEE
Q psy3751 402 PKRKFIIADTPGHEQYTRN-----MITGASTADAVIILIDASKIKFNPSVNLLTQTK----RHSIIAHL-LRIKHIIIAV 471 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~-----~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~----~~~~~~~~-~~~~~iivvi 471 (967)
++..+.+|||||+++|... ....++.+|++|+|+|+++ ....+.. +.+..+.. ..-.++++|+
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~-------~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES-------TEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTC-------SCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCC-------hhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4678999999999988543 3334578999999999998 2211211 11222221 1224599999
Q ss_pred ecCCccCc--CHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 472 NKMDLINY--NQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 472 NK~D~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
||+|+.+. .++.+....++++.+.+.+|+.+.+++++||++ .|+.+.
T Consensus 123 NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHH
T ss_pred ecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHH
Confidence 99999862 222223455677788888886567999999999 777664
No 139
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.62 E-value=9e-16 Score=153.71 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=96.0
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|++|+|||||+++|++..-. . +....+..+.. ..+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------------~----~~~~t~~~~~~-~~~~ 51 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFV-----------------------------S----DYDPTIEDSYT-KICS 51 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCC-----------------------------S----SCCTTCCEEEE-EEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCc-----------------------------c----ccCCCcCceEE-EEEE
Confidence 346789999999999999999999972100 0 00001111111 2233
Q ss_pred cCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HH---cCCCeEEEEEecC
Q psy3751 401 TPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HL---LRIKHIIIAVNKM 474 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~---~~~~~iivviNK~ 474 (967)
.++ ..+.++||||+++|.......+..+|++++|+|+++.. ........+... .. .+++ +++|+||+
T Consensus 52 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 124 (181)
T 2fn4_A 52 VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ------SFNEVGKLFTQILRVKDRDDFP-VVLVGNKA 124 (181)
T ss_dssp ETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH------HHHHHHHHHHHHHHHHTSSCCC-EEEEEECG
T ss_pred ECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH------HHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 333 46889999999888766666778899999999998711 011122222111 22 2444 99999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+.+..+.. ..+...+....++ +++++||++|.|++++
T Consensus 125 Dl~~~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 125 DLESQRQVP----RSEASAFGASHHV---AYFEASAKLRLNVDEA 162 (181)
T ss_dssp GGGGGCCSC----HHHHHHHHHHTTC---EEEECBTTTTBSHHHH
T ss_pred ccccccccC----HHHHHHHHHHcCC---eEEEecCCCCCCHHHH
Confidence 997632211 1223344445554 8999999999999985
No 140
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.9e-15 Score=149.80 Aligned_cols=151 Identities=19% Similarity=0.105 Sum_probs=95.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|++|+|||||+++|++..-. .... . ..+.+.. ........
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~------------------------~~~~-~------t~~~~~~-~~~~~~~~ 49 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFR------------------------ESYI-P------TVEDTYR-QVISCDKS 49 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCC------------------------SSCC-C------CSCEEEE-EEEEETTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC------------------------CCCC-C------CccccEE-EEEEECCE
Confidence 4589999999999999999999862110 0000 0 0011110 01112222
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-----cCCCeEEEEEecCCcc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-----LRIKHIIIAVNKMDLI 477 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-----~~~~~iivviNK~D~~ 477 (967)
...+.++||||+++|.......+..+|++++|+|+++.. ...+....+..+.. .+.| +++|+||+|+.
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~ 122 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ------SLEELKPIYEQICEIKGDVESIP-IMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHH------HHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHH------HHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccc
Confidence 356899999999998888888889999999999998721 11122222222222 1344 99999999987
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..+.. ..+...+.+..++ +++++||++|.|++++
T Consensus 123 ~~~~v~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 123 PSREVQ----SSEAEALARTWKC---AFMETSAKLNHNVKEL 157 (172)
T ss_dssp GGCCSC----HHHHHHHHHHHTC---EEEECBTTTTBSHHHH
T ss_pred cccccC----HHHHHHHHHHhCC---eEEEecCCCCcCHHHH
Confidence 543211 1122334445554 8999999999999984
No 141
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.61 E-value=1.3e-15 Score=155.35 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=93.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+..+|+++|++|+|||||+++|++.. +. . ...|+......+..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~------------------------~~--~----------~~~t~~~~~~~~~~~ 67 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDR------------------------LG--Q----------HVPTLHPTSEELTIA 67 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------------------------------------------CCCCCSCEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC------------------------CC--c----------cCCCCCceeEEEEEC
Confidence 45789999999999999999998611 10 0 001222223445666
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~D~~~ 478 (967)
+..+.++||||+++|...+...++.+|++++|+|+++.. .+ ......+..... .++| +++|+||+|+.+
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~-----s~-~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 140 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE-----RL-LESKEELDSLMTDETIANVP-ILILGNKIDRPE 140 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG-----GH-HHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTT
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH-----HH-HHHHHHHHHHHhCcccCCCc-EEEEEECCCccc
Confidence 788999999999988776667788999999999998721 11 222223222221 2444 999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcC--------------CccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIH--------------FQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~--------------~~~~~ii~iSa~~g~gi~~l 519 (967)
... .++ +++.+.... ....+++++||++|.|++++
T Consensus 141 ~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 189 (198)
T 1f6b_A 141 AIS--EER----LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189 (198)
T ss_dssp CCC--HHH----HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred cCC--HHH----HHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence 211 122 233332211 13468999999999999984
No 142
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.61 E-value=1.6e-15 Score=153.61 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=97.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+..+|+++|++|+|||||+++|++.. +. ....|+......+..+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~------------------------~~------------~~~~t~~~~~~~~~~~ 65 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDR------------------------LA------------TLQPTWHPTSEELAIG 65 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSC------------------------CC------------CCCCCCSCEEEEEEET
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC------------------------CC------------ccccCCCCCeEEEEEC
Confidence 45789999999999999999998621 10 0011222233456667
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCccCc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~~~ 479 (967)
+..+.++||||+++|...+...++.+|++++|+|+++.. .+ ......+..... ....++++|+||+|+.+.
T Consensus 66 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE-----RF-DEARVELDALFNIAELKDVPFVILGNKIDAPNA 139 (190)
T ss_dssp TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG-----GH-HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH-----HH-HHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC
Confidence 789999999999998777777789999999999999721 11 122222222221 123459999999999752
Q ss_pred CHHHHHHHHHHHHHHHHHcC---------CccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIH---------FQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~---------~~~~~ii~iSa~~g~gi~~l 519 (967)
.. .+ ++.+.++... ....+++++||++|.|++++
T Consensus 140 ~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 182 (190)
T 1m2o_B 140 VS--EA----ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA 182 (190)
T ss_dssp CC--HH----HHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHH
T ss_pred CC--HH----HHHHHhCCccccccccccccceEEEEEeECCcCCCHHHH
Confidence 11 11 2233332211 13468999999999999984
No 143
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.61 E-value=1.1e-15 Score=150.94 Aligned_cols=150 Identities=16% Similarity=0.081 Sum_probs=94.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEee-ceeeeecC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDV-AYRYFNTP 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~ 402 (967)
.++|+++|++|+|||||+++|++..-. . +....+.... ....+...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~-----------------------------~----~~~~t~~~~~~~~~~~~~~ 49 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV-----------------------------E----KYDPTIEDSYRKQVEVDCQ 49 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-----------------------------C----SCCCCSEEEEEEEEESSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------C----CCCCCccceEEEEEEECCE
Confidence 579999999999999999999862100 0 0000011111 11112223
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~D~~~ 478 (967)
...+.++||||+++|.......+..+|++++|+|+++.. .+ ......+..+.. .+.| +++|+||+|+.+
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~-~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 122 (167)
T 1c1y_A 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS-----TF-NDLQDLREQILRVKDTEDVP-MILVGNKCDLED 122 (167)
T ss_dssp EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH-----HH-HTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGG
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhhCcCCCc-EEEEEECccccc
Confidence 457889999999888777777788999999999998721 01 111222222211 2444 999999999975
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.. .++...+.+.++ ..+++++||++|.|++++
T Consensus 123 ~~~~~----~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 123 ERVVG----KEQGQNLARQWC--NCAFLESSAKSKINVNEI 157 (167)
T ss_dssp GCCSC----HHHHHHHHHHTT--SCEEEECBTTTTBSHHHH
T ss_pred cccCC----HHHHHHHHHHcc--CCcEEEecCCCCCCHHHH
Confidence 43211 122344455542 248999999999999984
No 144
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.6e-15 Score=153.94 Aligned_cols=150 Identities=23% Similarity=0.183 Sum_probs=98.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhcc--ceeEeeceeee
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ--GITIDVAYRYF 399 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~--g~Ti~~~~~~~ 399 (967)
.+.++|+++|++|+|||||+++|++..-. .+... |.+.......+
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~~ 59 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFD---------------------------------PELAATIGVDFKVKTISV 59 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------TTCCCCCSEEEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC---------------------------------ccCCCccceEEEEEEEEE
Confidence 35689999999999999999999872110 01111 22322222233
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc---CCCeEEEEEecCC
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL---RIKHIIIAVNKMD 475 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~---~~~~iivviNK~D 475 (967)
......+.||||||+++|...+...+..+|++|+|+|+++ ... ......+..+... .-.++++|+||+|
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 132 (195)
T 1x3s_A 60 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR-------RDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132 (195)
T ss_dssp TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC-------HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence 3334678999999999887777778899999999999987 211 1222222223221 2345899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+... ..++...+.+..++ +++++||++|.|++++
T Consensus 133 l~~~~~-----~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 133 KENREV-----DRNEGLKFARKHSM---LFIEASAKTCDGVQCA 168 (195)
T ss_dssp SSSCCS-----CHHHHHHHHHHTTC---EEEECCTTTCTTHHHH
T ss_pred Cccccc-----CHHHHHHHHHHcCC---EEEEecCCCCCCHHHH
Confidence 964321 11223445555554 8999999999999985
No 145
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.61 E-value=2.2e-15 Score=149.10 Aligned_cols=149 Identities=18% Similarity=0.156 Sum_probs=88.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.+||+++|.+|+|||||+++|++..... ......+.+.....+..++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 48 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDH---------------------------------AHEMENSEDTYERRIMVDK 48 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------------------------------------------CEEEEEEEETT
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcc---------------------------------cccCCCcCCeeeEEEEECC
Confidence 5799999999999999999998622110 0001112222222233333
Q ss_pred --ceEEEeeChhhHHHHHHH-HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-c---CCCeEEEEEecCCc
Q psy3751 404 --RKFIIADTPGHEQYTRNM-ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-L---RIKHIIIAVNKMDL 476 (967)
Q Consensus 404 --~~~~liDtpG~~~~~~~~-~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~---~~~~iivviNK~D~ 476 (967)
..+.++||||++++...+ ...++.+|++++|+|+++.. .+ ....+.+..... . ++| +++|+||+|+
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 121 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRR-----SF-SKVPETLLRLRAGRPHHDLP-VILVGNKSDL 121 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHH-----HH-HTHHHHHHHHHHHSTTSCCC-EEEEEECTTC
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChH-----HH-HHHHHHHHHHHhcccCCCCC-EEEEeeCcch
Confidence 567899999998876533 33467899999999998721 11 122222222222 2 444 9999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+.. .++...+.+..++ +++++||++|.|++++
T Consensus 122 ~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l 157 (169)
T 3q85_A 122 ARSREVS----LEEGRHLAGTLSC---KHIETSAALHHNTREL 157 (169)
T ss_dssp GGGCCSC----HHHHHHHHHHTTC---EEEECBTTTTBSHHHH
T ss_pred hhcccCC----HHHHHHHHHHcCC---cEEEecCccCCCHHHH
Confidence 7533221 1234455666665 8999999999999985
No 146
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.61 E-value=6.7e-16 Score=160.07 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=93.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....+||+++|.+|+|||||+++|++.. +. .. .....|.+.. ...+
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~------------------------~~-----~~--~~~t~~~~~~--~~~~ 53 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGR------------------------FE-----KN--YNATVGAVNH--PVTF 53 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCS------------------------TT-----CE--EETTTTEEEE--EEEE
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCC------------------------CC-----CC--CCCccceeeE--EEEE
Confidence 34567999999999999999999998621 00 00 0000111111 1111
Q ss_pred ec-CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-HHHHHHHHHH---cCCCeEEEEEe
Q psy3751 400 NT-PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-TKRHSIIAHL---LRIKHIIIAVN 472 (967)
Q Consensus 400 ~~-~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t~~~~~~~~~---~~~~~iivviN 472 (967)
.. .+ ..+.+|||||++++.......+..+|++|+|+|+++ ....+ ..+.+..+.. .+. ++++|+|
T Consensus 54 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~-piilv~n 125 (218)
T 4djt_A 54 LDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTS-------RITCQNLARWVKEFQAVVGNEA-PIVVCAN 125 (218)
T ss_dssp EBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHHCSSS-CEEEEEE
T ss_pred EeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhcCCCC-CEEEEEE
Confidence 11 12 568999999999887666666788999999999997 22111 1222222222 234 4999999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+|+.+..+. ..+....+.+..++ +++++||++|.|++++.
T Consensus 126 K~Dl~~~~~~----~~~~~~~~~~~~~~---~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 126 KIDIKNRQKI----SKKLVMEVLKGKNY---EYFEISAKTAHNFGLPF 166 (218)
T ss_dssp CTTCC----C----CHHHHHHHTTTCCC---EEEEEBTTTTBTTTHHH
T ss_pred CCCCcccccc----CHHHHHHHHHHcCC---cEEEEecCCCCCHHHHH
Confidence 9999753221 12223344544544 89999999999999853
No 147
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.61 E-value=4e-16 Score=166.30 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=96.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.++|+++|++|+|||||+|+|++....+ ....|+|++.....+.. +
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v---------------------------------~~~pg~tv~~~~~~~~~-~ 48 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV---------------------------------GNWPGVTVERKSGLVKK-N 48 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC---------------------------------CSSSCCCCSCEEEECTT-C
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc---------------------------------cCCCCCcEEEEEEEEec-C
Confidence 4789999999999999999999721110 11136666655555555 7
Q ss_pred ceEEEeeChhhHHHH------HHHHhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 404 RKFIIADTPGHEQYT------RNMITGA--STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 404 ~~~~liDtpG~~~~~------~~~~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
..+.+|||||+..|. .-....+ ..+|++++|+|++. . .........+...++| +|+|+||+|
T Consensus 49 ~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~-------~--e~~~~~~~~l~~~~~p-~ilv~NK~D 118 (272)
T 3b1v_A 49 KDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN-------L--ERNLYLTTQLIETGIP-VTIALNMID 118 (272)
T ss_dssp TTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG-------H--HHHHHHHHHHHHTCSC-EEEEEECHH
T ss_pred CeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc-------h--HhHHHHHHHHHhcCCC-EEEEEEChh
Confidence 789999999976653 1111222 36999999999986 1 1122333334456777 899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+..... +..+...+.+.+++ +++++||++|.|++++
T Consensus 119 l~~~~~-----~~~~~~~l~~~lg~---~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 119 VLDGQG-----KKINVDKLSYHLGV---PVVATSALKQTGVDQV 154 (272)
T ss_dssp HHHHTT-----CCCCHHHHHHHHTS---CEEECBTTTTBSHHHH
T ss_pred hCCcCC-----cHHHHHHHHHHcCC---CEEEEEccCCCCHHHH
Confidence 864211 11123344555565 8999999999999984
No 148
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.61 E-value=2.4e-15 Score=152.78 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=99.0
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....+||+++|.+|+|||||+++|++..-. .+....+..+.. ..+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~---------------------------------~~~~~t~~~~~~-~~~ 64 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIP---------------------------------TAYVPTVFENFS-HVM 64 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------SSCCCCSEEEEE-EEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCC---------------------------------CccCCeeeeeeE-EEE
Confidence 3456799999999999999999999872110 000001111111 122
Q ss_pred ecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH--HHHHHHHHH-cCCCeEEEEEecC
Q psy3751 400 NTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT--KRHSIIAHL-LRIKHIIIAVNKM 474 (967)
Q Consensus 400 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t--~~~~~~~~~-~~~~~iivviNK~ 474 (967)
..++ ..+.++||||+++|.......++.+|++|+|+|+++ ...-+. ...+..+.. ..-.++++|+||+
T Consensus 65 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 137 (194)
T 3reg_A 65 KYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNN-------RTSFDNISTKWEPEIKHYIDTAKTVLVGLKV 137 (194)
T ss_dssp EETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHCTTSEEEEEEECG
T ss_pred EECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCC-------HHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 3333 456899999999998888888899999999999987 211111 222222222 2234699999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+.+.... ....++...+.+.+++. .++++||++|.|++++
T Consensus 138 Dl~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 138 DLRKDGSD--DVTKQEGDDLCQKLGCV--AYIEASSVAKIGLNEV 178 (194)
T ss_dssp GGCCTTTT--CCCHHHHHHHHHHHTCS--CEEECBTTTTBSHHHH
T ss_pred hhccCCCC--cccHHHHHHHHHhcCCC--EEEEeecCCCCCHHHH
Confidence 99753110 11223345566666762 3899999999999985
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=1e-15 Score=175.58 Aligned_cols=144 Identities=22% Similarity=0.298 Sum_probs=96.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
.+|+++|++|+|||||+|+|++..-.+ .+...|+|.+..+..+++.+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~--------------------------------v~~~~g~T~d~~~~~~~~~~~ 51 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI--------------------------------VEDTPGVTRDRIYSSAEWLNY 51 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------------------------------------CEEEECTTCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee--------------------------------ecCCCCCccceEEEEEEECCc
Confidence 589999999999999999998722111 122357888888888888889
Q ss_pred eEEEeeChhhH--------HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 405 KFIIADTPGHE--------QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 405 ~~~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
.+.+|||||+. .+...+..++..||++|+|+|+.+ +......+....++..+.| +++|+||+|+
T Consensus 52 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~-------~~~~~d~~~~~~l~~~~~p-vilv~NK~D~ 123 (436)
T 2hjg_A 52 DFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE-------GVTAADEEVAKILYRTKKP-VVLAVNKLDN 123 (436)
T ss_dssp CCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTT-------CSCHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred eEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCC-------CCCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 99999999975 566677778899999999999998 6666666666666656665 9999999998
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+... ...++. .+++. +++++||++|.|+.++
T Consensus 124 ~~~~~--------~~~~~~-~lg~~--~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 124 TEMRA--------NIYDFY-SLGFG--EPYPISGTHGLGLGDL 155 (436)
T ss_dssp -------------CCCSSG-GGSSC--CCEECBTTTTBTHHHH
T ss_pred ccchh--------hHHHHH-HcCCC--CeEEEeCcCCCChHHH
Confidence 74311 111122 34443 6799999999999984
No 150
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.61 E-value=2.4e-15 Score=151.75 Aligned_cols=150 Identities=15% Similarity=0.067 Sum_probs=94.0
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
++.++|+++|++|+|||||+++|++..-.. .. .+.+.+.....+..
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------------------~~------~~t~~~~~~~~~~~ 47 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVD----------------------------EY------DPTIEDSYRKQVVI 47 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCC----------------------------CC------CTTCCEEEEEEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCC----------------------------CC------CCCchheEEEEEEE
Confidence 356899999999999999999998622100 00 01111111122333
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHH-c--CCCeEEEEEecCC
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHL-L--RIKHIIIAVNKMD 475 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~-~--~~~~iivviNK~D 475 (967)
++ ..+.++||||+++|.......+..+|++++|+|+++ ... ......+..+.. . .-.++++|+||+|
T Consensus 48 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN-------TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp TTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 33 347789999999887777777889999999999987 211 112222222222 1 1234999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+.+... ..+....+.+.+++ +++++||++|.|++++.
T Consensus 121 l~~~~~-----~~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 121 LPSRTV-----DTKQAQDLARSYGI---PFIETSAKTRQGVDDAF 157 (189)
T ss_dssp SSSCSS-----CHHHHHHHHHHHTC---CEEECCTTTCTTHHHHH
T ss_pred Cccccc-----CHHHHHHHHHHcCC---eEEEEeCCCCCCHHHHH
Confidence 975321 11233445555565 89999999999999853
No 151
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.61 E-value=1.2e-15 Score=157.02 Aligned_cols=151 Identities=20% Similarity=0.268 Sum_probs=98.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.+||+++|..|+|||||+++++.. .| ..+....+..+.....+..+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~------------------------~f---------~~~~~~Tig~d~~~k~~~~~ 58 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYD------------------------SF---------DNTYQATIGIDFLSKTMYLE 58 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS------------------------CC---------C----------CEEEEEECS
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhC------------------------CC---------CCCcCCccceEEEEEEEEec
Confidence 4579999999999999999999861 11 11112222333333334444
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-c-CCCeEEEEEecCCccC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-L-RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~-~~~~iivviNK~D~~~ 478 (967)
+ ..+.||||+|+++|.......++.+|++++|+|.+... ........+..+.. . .-.++|+|.||+|+.+
T Consensus 59 ~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~------Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVN------SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHH------HHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhH------HHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 4 46779999999999877777889999999999998721 11122222222222 1 1245999999999976
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
..+.. .++.+.+.+++++ +++.+||++|.||+++
T Consensus 133 ~r~V~----~~e~~~~a~~~~~---~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 133 KRQVS----IEEGERKAKELNV---MFIETSAKAGYNVKQL 166 (216)
T ss_dssp GCCSC----HHHHHHHHHHHTC---EEEEEBTTTTBSHHHH
T ss_pred cCccc----HHHHhhHHHHhCC---eeEEEeCCCCcCHHHH
Confidence 43221 2234556677775 7999999999999985
No 152
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.60 E-value=3.9e-15 Score=149.85 Aligned_cols=152 Identities=15% Similarity=0.128 Sum_probs=95.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|++|+|||||+++|++..-. ... ...+.+.....+..+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~-----------------------------~~~-----~~t~~~~~~~~~~~~ 49 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP-----------------------------GEY-----IPTVFDNYSANVMVD 49 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-----------------------------SSC-----CCCSCCEEEEEEEET
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCc-----CCcccceeEEEEEEC
Confidence 4689999999999999999999862110 000 000000001112223
Q ss_pred --CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH-H-HHHHHHHHc--CCCeEEEEEecCCc
Q psy3751 403 --KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT-K-RHSIIAHLL--RIKHIIIAVNKMDL 476 (967)
Q Consensus 403 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t-~-~~~~~~~~~--~~~~iivviNK~D~ 476 (967)
...+.++||||+++|.......+..+|++++|+|+++ ...-+. . ..+..+... +.| +++|+||+|+
T Consensus 50 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 121 (186)
T 1mh1_A 50 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS-------PASFENVRAKWYPEVRHHCPNTP-IILVGTKLDL 121 (186)
T ss_dssp TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHH
T ss_pred CEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC-------hhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccc
Confidence 3457799999999987777777899999999999987 221111 1 222333322 444 9999999999
Q ss_pred cCcCHHHHHHH---------HHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRI---------VYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+... ..+.+ .++...+.+..+. .+++++||++|.|++++
T Consensus 122 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l 170 (186)
T 1mh1_A 122 RDDKD-TIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKTV 170 (186)
T ss_dssp HTCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHH
T ss_pred cccch-hhhhhcccccccCCHHHHHHHHHhcCC--cEEEEecCCCccCHHHH
Confidence 76421 11111 1233445555553 38999999999999984
No 153
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.60 E-value=1.5e-15 Score=155.89 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=75.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+++|++....+. .+....+.++.....+..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~ 66 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFL-------------------------------KDYAMTSGVEVVVAPVTI 66 (208)
T ss_dssp EEEEEEEEC-----------------------------------------------------------------CEEEEC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCccc-------------------------------CCCCCccceEEEEEEEEE
Confidence 3568999999999999999999986211110 000111122333334455
Q ss_pred C----CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc-----CCCeEEEEE
Q psy3751 402 P----KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL-----RIKHIIIAV 471 (967)
Q Consensus 402 ~----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~-----~~~~iivvi 471 (967)
+ ...+.++||||+++|...+...+..+|++|+|+|+++ ... ......+..+... .-.++++|+
T Consensus 67 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 67 PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSS-------MESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp TTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTC-------HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred CCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCC-------HHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 4 3578999999999999888888999999999999987 221 2223333333321 234599999
Q ss_pred ecCCccC-cCHHHHHHHHHHHHHHHHHcCCccceEEeccccC-CCcccccc
Q psy3751 472 NKMDLIN-YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALN-GDNIISAS 520 (967)
Q Consensus 472 NK~D~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~-g~gi~~l~ 520 (967)
||+|+.+ ..+. ..++...+.+.+++ +++++||++ |.|++++.
T Consensus 140 nK~Dl~~~~~~v----~~~~~~~~~~~~~~---~~~~~Sa~~~~~gi~~l~ 183 (208)
T 2yc2_C 140 NKTDLPPQRHQV----RLDMAQDWATTNTL---DFFDVSANPPGKDADAPF 183 (208)
T ss_dssp ECC-------CC----CHHHHHHHHHHTTC---EEEECCC-------CHHH
T ss_pred ECcccchhhccC----CHHHHHHHHHHcCC---EEEEeccCCCCcCHHHHH
Confidence 9999975 2111 12334556666664 899999999 99999853
No 154
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.60 E-value=3.4e-15 Score=151.93 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=94.7
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
...+..+||+++|..|+|||||+++|.+.... +...|.+.......
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~----------------------------------~~~~~~~~~~~~~~ 60 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP----------------------------------NETLFLESTNKIYK 60 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCG----------------------------------GGGGGCCCCCSCEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCC----------------------------------cceeeeccccceee
Confidence 35567789999999999999999988762110 00111111111111
Q ss_pred ee---cCCceEEEeeChhhHHHHHHH---HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEE
Q psy3751 399 FN---TPKRKFIIADTPGHEQYTRNM---ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHII 468 (967)
Q Consensus 399 ~~---~~~~~~~liDtpG~~~~~~~~---~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~ii 468 (967)
+. .....+.+|||||+++|.... ...++.+|++|+|+|+++ ............+.. ..-.+++
T Consensus 61 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~~~~~~~~~~~l~~~~~~~~~~pii 133 (196)
T 3llu_A 61 DDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD-------DYMEALTRLHITVSKAYKVNPDMNFE 133 (196)
T ss_dssp EEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTS-------CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred eeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCC-------chHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 21 334689999999999887665 567788999999999998 322222222222222 2234599
Q ss_pred EEEecCCccCcCH--HHHHHHHHH-HHHHHHHcC-CccceEEeccccCCCccccc
Q psy3751 469 IAVNKMDLINYNQ--IFYKRIVYA-YKKFAEDIH-FQNINTIPISALNGDNIISA 519 (967)
Q Consensus 469 vviNK~D~~~~~~--~~~~~i~~~-~~~~~~~~~-~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+||+|+.+.+. +....+... .+.+.+... -.+++++++||++ .|++++
T Consensus 134 lv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~ 187 (196)
T 3llu_A 134 VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEA 187 (196)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHH
T ss_pred EEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHH
Confidence 9999999986321 112222222 233333110 1135899999999 999985
No 155
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.60 E-value=3.2e-15 Score=161.76 Aligned_cols=179 Identities=16% Similarity=0.105 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHH-HHHHhCCcE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDN-CISKLGETL 97 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~-~~~~~gi~i 97 (967)
++..++...+.|++.+. .+++++++|||+||+++++++.+++ +.++.++|+|+|...++..+.+++ +++++|+++
T Consensus 3 ~~~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~---g~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~ 78 (308)
T 2dpl_A 3 WGRFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAI---GDRLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNL 78 (308)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEECSCCCTTHHHHHHHHHTTTTCCEE
T ss_pred HHHHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhh---CCCEEEEEEcCCCCChHHHHHHHHHHHHHcCCcE
Confidence 45566677788887765 4789999999999999999999874 347899999999876555566666 667899999
Q ss_pred EEEecchhhhhcccccCCCC--cccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCc
Q psy3751 98 IVRSVEDSIMKGTVRLRKPN--TDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p 175 (967)
+++..+..+.........|. +..|+..+...+.+.++++|.+.+++||+.||..+... .+....+..+
T Consensus 79 ~vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~~Et~~-~iks~~~~~~--------- 148 (308)
T 2dpl_A 79 HYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQG-KIKSHHNVGG--------- 148 (308)
T ss_dssp EEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC---------------------------
T ss_pred EEEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccchhhcc-chhhhhcccc---------
Confidence 99988765443222211111 22344455566778888899999999999987754321 0000000000
Q ss_pred cccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 176 ELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 176 ~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
-....+...++||.+|+++||++|++++|+|++..+
T Consensus 149 --------l~~~~~~~virPL~~l~K~EI~~~a~~~glp~~i~~ 184 (308)
T 2dpl_A 149 --------LPEKLNLKLIEPLRDLYKDEVRELAKFLGLPEKIYN 184 (308)
T ss_dssp ------------CCCEEECTTTTCCHHHHHHHHHHTTCCHHHHT
T ss_pred --------CCccCCCeEEEEcccCCHHHHHHHHHHhCCCceeee
Confidence 001123468999999999999999999999976544
No 156
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.60 E-value=6.3e-16 Score=155.08 Aligned_cols=149 Identities=18% Similarity=0.139 Sum_probs=95.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|++|+|||||+++|+...-. .+.. ...+.+. ...+..+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~----------------------------~~~~---~t~~~~~---~~~~~~~ 50 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV----------------------------DSYD---PTIENTF---TKLITVN 50 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC----------------------------SCCC---TTCCEEE---EEEEEET
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC----------------------------CCCC---CCccccE---EEEEEEC
Confidence 5689999999999999999999862100 0000 0011111 2223333
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH-HHHHH---cCCCeEEEEEecCCc
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS-IIAHL---LRIKHIIIAVNKMDL 476 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~-~~~~~---~~~~~iivviNK~D~ 476 (967)
+ ..+.++||||+++|.......++.+|++++|+|+++.. .. ......+ .+... .++| +++|+||+|+
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 123 (181)
T 3t5g_A 51 GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK-----SF-EVIKVIHGKLLDMVGKVQIP-IMLVGNKKDL 123 (181)
T ss_dssp TEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH-----HH-HHHHHHHHHHHHHC----CC-EEEEEECTTC
T ss_pred CEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3 56789999999988665666778899999999998711 01 1111111 12222 2444 9999999998
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+.. .++.+.+.+.++. +++++||++|.|++++
T Consensus 124 ~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 124 HMERVIS----YEEGKALAESWNA---AFLESSAKENQTAVDV 159 (181)
T ss_dssp TTTCCSC----HHHHHHHHHHTTC---EEEECCTTSHHHHHHH
T ss_pred hhcceec----HHHHHHHHHHhCC---cEEEEecCCCCCHHHH
Confidence 7543211 2234556666665 8999999999999985
No 157
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.60 E-value=4.6e-15 Score=152.07 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=99.1
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
..+.++|+++|++|+|||||+++|++..-. ... .+.+.+.....+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~-----~~t~~~~~~~~~~ 56 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV-----------------------------EDY-----EPTKADSYRKKVV 56 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------TTC-----CTTCCEEEEEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC-----------------------------CCC-----CCccceEEEEEEE
Confidence 446789999999999999999999872200 000 0001111112233
Q ss_pred cCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHc---CCCeEEEEEecC
Q psy3751 401 TPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLL---RIKHIIIAVNKM 474 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~---~~~~iivviNK~ 474 (967)
.++ ..+.||||||+++|.......+..+|++++|+|+++.. . .......+..+ ... ++| +++|+||+
T Consensus 57 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----s-~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 129 (206)
T 2bov_A 57 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME-----S-FAATADFREQILRVKEDENVP-FLLVGNKS 129 (206)
T ss_dssp ETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH-----H-HHHHHHHHHHHHHHTTCSCCC-EEEEEECT
T ss_pred ECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH-----H-HHHHHHHHHHHHHhcCCCCCC-EEEEEecc
Confidence 333 47889999999999888888889999999999998711 0 11122222222 222 444 99999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+.+..+.. .++...+.+..++ +++++||++|.|++++.
T Consensus 130 Dl~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 130 DLEDKRQVS----VEEAKNRAEQWNV---NYVETSAKTRANVDKVF 168 (206)
T ss_dssp TCGGGCCSC----HHHHHHHHHHHTC---EEEEECTTTCTTHHHHH
T ss_pred Ccccccccc----HHHHHHHHHHhCC---eEEEEeCCCCCCHHHHH
Confidence 997643221 1233445555665 89999999999999853
No 158
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.60 E-value=4.1e-15 Score=149.72 Aligned_cols=150 Identities=20% Similarity=0.179 Sum_probs=97.3
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
..+.++|+++|++|+|||||+++|++..-. ... ...+.+.....+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~-----~~t~~~~~~~~~~ 60 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV-----------------------------EDY-----EPTKADSYRKKVV 60 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------CSC-----CTTCCEEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-----------------------------CcC-----CCccceEEEEEEE
Confidence 346789999999999999999999862100 000 0001111111223
Q ss_pred cCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHH-HHHc---CCCeEEEEEec
Q psy3751 401 TPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSII-AHLL---RIKHIIIAVNK 473 (967)
Q Consensus 401 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~-~~~~---~~~~iivviNK 473 (967)
.++ ..+.|+||||+++|...+...+..+|++++|+|+++ ... ......+.. .... ++| +++|+||
T Consensus 61 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK 132 (187)
T 2a9k_A 61 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE-------MESFAATADFREQILRVKEDENVP-FLLVGNK 132 (187)
T ss_dssp ETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHHCCTTCC-EEEEEEC
T ss_pred ECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEC
Confidence 333 478899999999988888888899999999999987 111 111222221 1221 444 9999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+.+..+.. .++...+++..++ +++++||++|.|++++
T Consensus 133 ~Dl~~~~~~~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 133 SDLEDKRQVS----VEEAKNRAEQWNV---NYVETSAKTRANVDKV 171 (187)
T ss_dssp GGGGGGCCSC----HHHHHHHHHHTTC---EEEECCTTTCTTHHHH
T ss_pred ccccccCccC----HHHHHHHHHHcCC---eEEEeCCCCCCCHHHH
Confidence 9997643211 2234455566665 8999999999999985
No 159
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.59 E-value=9e-16 Score=152.65 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=92.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+..+|+++|.+|+|||||+++|++..... .....|+|.+.....+..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~--------------------------------~~~~~~~t~~~~~~~~~~~ 50 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI--------------------------------VTDIAGTTRDVLREHIHID 50 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC--------------------------------CCSSTTCCCSCEEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce--------------------------------eeCCCCceeceeeEEEEEC
Confidence 44789999999999999999998732110 0011344555444556667
Q ss_pred CceEEEeeChhhHHH--------HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc---CCCeEEEEE
Q psy3751 403 KRKFIIADTPGHEQY--------TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL---RIKHIIIAV 471 (967)
Q Consensus 403 ~~~~~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~---~~~~iivvi 471 (967)
+..+.++||||..++ +..+...++.+|++++|+|+++... .+..+.+..+... ++| +|+|+
T Consensus 51 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s-------~~~~~~~~~~~~~~~~~~p-~ilv~ 122 (172)
T 2gj8_A 51 GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA-------VDPAEIWPEFIARLPAKLP-ITVVR 122 (172)
T ss_dssp TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC-------CSHHHHCHHHHHHSCTTCC-EEEEE
T ss_pred CeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHhcccCCC-EEEEE
Confidence 778999999996432 2223345789999999999987321 1122222222222 344 89999
Q ss_pred ecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 472 NKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 472 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
||+|+.+.... +.+. ...+++++||++|.|++++
T Consensus 123 NK~Dl~~~~~~-----------~~~~---~~~~~~~~SA~~g~gv~~l 156 (172)
T 2gj8_A 123 NKADITGETLG-----------MSEV---NGHALIRLSARTGEGVDVL 156 (172)
T ss_dssp ECHHHHCCCCE-----------EEEE---TTEEEEECCTTTCTTHHHH
T ss_pred ECccCCcchhh-----------hhhc---cCCceEEEeCCCCCCHHHH
Confidence 99998642110 0111 1358999999999999985
No 160
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.59 E-value=4.7e-15 Score=150.38 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=93.6
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.+.++|+++|++|+|||||+++|+.. .+. . ...|++.....+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~------------------------~~~-----~-------~~~t~~~~~~~~~~ 70 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG------------------------EIV-----T-------TIPTIGFNVETVEY 70 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS------------------------CCE-----E-------EEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC------------------------Ccc-----c-------cCCcCceeEEEEEE
Confidence 46689999999999999999999751 111 0 01122233344556
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~~ 478 (967)
++..+.++||||+++|...+...+..+|++|+|+|+++.. .+ ....+.+..... ..-.++++|+||+|+.+
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~-----s~-~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE-----RV-QESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG-----GH-HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH-----HH-HHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 7788999999999988777777788999999999998721 11 222223322221 12345999999999976
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .+++.+.+. .........+++++||++|.|++++
T Consensus 145 ~~~--~~~i~~~~~--~~~~~~~~~~~~~~SA~~g~gi~~l 181 (192)
T 2b6h_A 145 AMP--VSELTDKLG--LQHLRSRTWYVQATCATQGTGLYDG 181 (192)
T ss_dssp CCC--HHHHHHHTT--GGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred CCC--HHHHHHHhC--cccccCCceEEEECcCCCcCCHHHH
Confidence 421 122222111 0011112457999999999999984
No 161
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.59 E-value=4.6e-15 Score=151.65 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=98.5
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...+||+++|.+|+|||||+++|++..-.. +....++.+.. ..+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~---------------------------------~~~~t~~~~~~-~~~~~ 68 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE---------------------------------VYVPTVFENYI-ADIEV 68 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCS---------------------------------SCCCSSCCCCE-EEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCc---------------------------------ccCCcccceEE-EEEEE
Confidence 356899999999999999999998722100 00001111110 11233
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCcc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLI 477 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~ 477 (967)
++ ..+.++||||+++|.......+..+|++|+|+|+++.. .+.......+..+... ++| +++|+||+|+.
T Consensus 69 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 2gco_A 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD-----SLENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 142 (201)
T ss_dssp TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH-----HHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGT
T ss_pred CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhh
Confidence 33 47889999999998877777889999999999998711 1111112233333333 455 99999999998
Q ss_pred CcCHHHHHHH---------HHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRI---------VYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+... ..+.+ .++...+.+.++. .+++++||++|.|++++
T Consensus 143 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l 190 (201)
T 2gco_A 143 QDEH-TRRELAKMKQEPVRSEEGRDMANRISA--FGYLECSAKTKEGVREV 190 (201)
T ss_dssp TCHH-HHHHHHTTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHH
T ss_pred cCcc-chhhhcccccCcCCHHHHHHHHHhCCC--cEEEEeeCCCCCCHHHH
Confidence 6422 11111 1234455555554 37899999999999984
No 162
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=5.2e-15 Score=150.79 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=96.2
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
+....++|+++|.+|+|||||+++|++..-. +... ...+.+.. ....+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~--~t~~~~~~-~~~~~ 51 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR-----------------------------DTYI--PTIEDTYR-QVISC 51 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCC-----------------------------CTTS--CCCCEEEE-EEEEE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCC-----------------------------Cccc--Ccccccee-EEEEE
Confidence 3456789999999999999999999872110 0000 00011110 01112
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-----cCCCeEEEEEecC
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-----LRIKHIIIAVNKM 474 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-----~~~~~iivviNK~ 474 (967)
......+.++||||+++|.......+..+|++++|+|+++.. .+ ......+..+.. .++| +++|+||+
T Consensus 52 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~-~~~~~~~~~i~~~~~~~~~~p-iilv~nK~ 124 (199)
T 2gf0_A 52 DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ-----SL-EELGPIYKLIVQIKGSVEDIP-VMLVGNKC 124 (199)
T ss_dssp TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHH-----HH-HTTHHHHHHHHHHHSCGGGSC-EEEEEECT
T ss_pred CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHH-----HH-HHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 222357899999999998888778889999999999998721 01 111222222222 1344 99999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+.+... . ..+...+.+.+++ +++++||++|.|++++
T Consensus 125 Dl~~~~~-~----~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 125 DETQREV-D----TREAQAVAQEWKC---AFMETSAKMNYNVKEL 161 (199)
T ss_dssp TCSSCSS-C----HHHHHHHHHHHTC---EEEECBTTTTBSHHHH
T ss_pred cCCcccc-C----HHHHHHHHHHhCC---eEEEEecCCCCCHHHH
Confidence 9975321 1 1223344555554 8999999999999984
No 163
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.58 E-value=5.9e-15 Score=145.15 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=94.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC-
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP- 402 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 402 (967)
.++|+++|++|+|||||+++|++..-.- ... ..+. +.....+..+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~----~~~~-~~~~~~~~~~~ 48 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-----------------------------ECD----PTIE-DSYRKQVVIDG 48 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-----------------------------CCC----TTCC-EEEEEEEEETT
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc-----------------------------ccC----Cccc-eEEEEEEEECC
Confidence 4789999999999999999998721100 000 0000 0001112222
Q ss_pred -CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc----CCCeEEEEEecCCc
Q psy3751 403 -KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL----RIKHIIIAVNKMDL 476 (967)
Q Consensus 403 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~----~~~~iivviNK~D~ 476 (967)
...+.++||||+.+|.......+..+|++++|+|+++ ... ....+.+..+... ++| +++|+||+|+
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl 120 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN-------TKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDL 120 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhh
Confidence 3467899999998887777777889999999999987 211 1222223222222 444 8999999998
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+... ..++.+.+.+..++ +++++||++|.|++++
T Consensus 121 ~~~~~-----~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 121 AARTV-----ESRQAQDLARSYGI---PYIETSAKTRQGVEDA 155 (166)
T ss_dssp SCCCS-----CHHHHHHHHHHHTC---CEEEECTTTCTTHHHH
T ss_pred hhccc-----CHHHHHHHHHHcCC---eEEEecCCCCCCHHHH
Confidence 76221 12234445556665 8999999999999984
No 164
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.58 E-value=1.9e-15 Score=152.76 Aligned_cols=152 Identities=19% Similarity=0.199 Sum_probs=97.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
++.++|+++|++|+|||||+++|+.. .+. .. ..|+......+..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~------------------------~~~--~~----------~~t~~~~~~~~~~ 63 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG------------------------DVV--TT----------VPTVGVNLETLQY 63 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS------------------------CCE--EE----------CSSTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC------------------------CCC--Cc----------CCCCceEEEEEEE
Confidence 46789999999999999999999751 110 00 0012222233555
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc---CCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL---RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~---~~~~iivviNK~D~~~ 478 (967)
++..+.++||||+++|...+...+..+|++|+|+|++++. .+ ....+.+...... .-.++++|+||+|+.+
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD-----RM-GVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT-----TH-HHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH-----HH-HHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 6788999999999887766667788999999999998721 12 2222222222221 2345999999999976
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.... +++.+.+. .........+++++||++|.|++++
T Consensus 138 ~~~~--~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 138 AASE--AEIAEQLG--VSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp CCCH--HHHHHHTT--GGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred CCCH--HHHHHHhC--hhhccCCceEEEEccCCCccCHHHH
Confidence 4221 12222111 0111112458999999999999984
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.58 E-value=9.6e-15 Score=162.01 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=98.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.....|+++|++|+|||||+|+|++... ..+...+.|.+.....+..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~---------------------------------~~~~~~~~T~d~~~~~i~~ 223 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQ---------------------------------KVDTKLFTTMSPKRYAIPI 223 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC--------------------------------------------CCSCEEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCc---------------------------------cccCCcccccCCEEEEEEE
Confidence 3445699999999999999999997211 0111235566666667777
Q ss_pred CCceEEEeeChhh---------HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC--CCeEEEE
Q psy3751 402 PKRKFIIADTPGH---------EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR--IKHIIIA 470 (967)
Q Consensus 402 ~~~~~~liDtpG~---------~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~--~~~iivv 470 (967)
++..+.++||||+ +.| ..+...+..+|++++|+|++++.. ....+.......+..++ -.++|+|
T Consensus 224 ~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~aD~il~VvD~s~~~~----~~~~~~~~~~~~L~~l~~~~~p~ilV 298 (364)
T 2qtf_A 224 NNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYSDALILVIDSTFSEN----LLIETLQSSFEILREIGVSGKPILVT 298 (364)
T ss_dssp TTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGSSEEEEEEETTSCHH----HHHHHHHHHHHHHHHHTCCSCCEEEE
T ss_pred CCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhCCEEEEEEECCCCcc----hHHHHHHHHHHHHHHhCcCCCCEEEE
Confidence 7888999999996 223 445667899999999999987210 01222222333444443 2349999
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.||+|+.+.... .....+..+...+...+.+++++||++|.|++++
T Consensus 299 ~NK~Dl~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L 344 (364)
T 2qtf_A 299 LNKIDKINGDLY---KKLDLVEKLSKELYSPIFDVIPISALKRTNLELL 344 (364)
T ss_dssp EECGGGCCSCHH---HHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHH
T ss_pred EECCCCCCchHH---HHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHH
Confidence 999999864421 1222233333444222457899999999999984
No 166
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=1.8e-15 Score=152.69 Aligned_cols=146 Identities=23% Similarity=0.258 Sum_probs=99.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|++|+|||||+++|++. .+ ..+...|+|.+.....+..+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~------------------------~~---------~~~~~~~~t~~~~~~~~~~~ 52 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE------------------------NV---------YIGNWPGVTVEKKEGEFEYN 52 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT------------------------CE---------EEEECTTSCCEEEEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC------------------------Cc---------cccCCCCeeccceEEEEEeC
Confidence 4589999999999999999999861 11 01122456666666667777
Q ss_pred CceEEEeeChhhHHHH------HHHHhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 403 KRKFIIADTPGHEQYT------RNMITGA--STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~------~~~~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
+..+.++||||+.+|. ......+ ..+|++++|+|++. .......+..+...+.| +++|+||+
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---------~~~~~~~~~~~~~~~~p-iilv~nK~ 122 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---------LERNLYLTLQLMEMGAN-LLLALNKM 122 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---------HHHHHHHHHHHHTTTCC-EEEEEECH
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---------HHHHHHHHHHHHhcCCC-EEEEEEhh
Confidence 8899999999987652 1111222 35999999999875 12233344444445655 89999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+..... +....+.+.+.++. +++++||++|.|++++
T Consensus 123 Dl~~~~~-----~~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 123 DLAKSLG-----IEIDVDKLEKILGV---KVVPLSAAKKMGIEEL 159 (188)
T ss_dssp HHHHHTT-----CCCCHHHHHHHHTS---CEEECBGGGTBSHHHH
T ss_pred hcccccc-----chHHHHHHHHHhCC---CeEEEEecCCCCHHHH
Confidence 9864211 11223445555564 8999999999999984
No 167
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=2.6e-15 Score=150.77 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=94.6
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
++.++|+++|++|+|||||+++|++. .+ .. ...|+......+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~------------------------~~--~~----------~~~t~~~~~~~~~~ 59 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG------------------------EV--VT----------TKPTIGFNVETLSY 59 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS------------------------EE--EE----------ECSSTTCCEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC------------------------Cc--Cc----------cCCcCccceEEEEE
Confidence 46789999999999999999999851 11 00 01122222234555
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH---cCCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D~~~ 478 (967)
++..+.++||||+++|...+...+..+|++++|+|+++.. .+ ....+.+..... ..-.++++|+||+|+.+
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD-----RM-STASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT-----TH-HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH-----HH-HHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 6788999999999988777777889999999999998721 11 222333332221 12345999999999976
Q ss_pred cCHHHHHHHHHHHHHHHHHcC--CccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIH--FQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~--~~~~~ii~iSa~~g~gi~~l 519 (967)
... .+++ .+.+.... ....+++++||++|.|++++
T Consensus 134 ~~~--~~~i----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 134 ALS--ASEV----SKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp CCC--HHHH----HHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred CCC--HHHH----HHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 421 1122 22222111 12458999999999999984
No 168
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=6.7e-15 Score=149.40 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=98.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
+..++|+++|++|+|||||+++|++..-. . ...++ .+... ...+..
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~--~----------~~~~t-------------------~~~~~---~~~~~~ 61 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFP--E----------EYVPT-------------------VFDHY---AVSVTV 61 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCC--C----------SCCCS-------------------SCCCE---EEEEES
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--C----------CCCCc-------------------cccee---EEEEEE
Confidence 35689999999999999999999972100 0 00000 01111 112333
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHH-HHHHHHHHc--CCCeEEEEEecCC
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTK-RHSIIAHLL--RIKHIIIAVNKMD 475 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~-~~~~~~~~~--~~~~iivviNK~D 475 (967)
++ ..+.+|||||+++|.......++.+|++|+|+|+++ ... .... ..+..+... ++| +++|+||+|
T Consensus 62 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 133 (194)
T 2atx_A 62 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN-------PASFQNVKEEWVPELKEYAPNVP-FLLIGTQID 133 (194)
T ss_dssp SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTT
T ss_pred CCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChh
Confidence 33 578899999999888777778899999999999987 211 1111 223333332 444 999999999
Q ss_pred ccCcCHHHHHH---------HHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKR---------IVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+.... .+. ..++...+.+.++. .+++++||++|.|++++
T Consensus 134 l~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l 183 (194)
T 2atx_A 134 LRDDPKT-LARLNDMKEKPICVEQGQKLAKEIGA--CCYVECSALTQKGLKTV 183 (194)
T ss_dssp STTCHHH-HHHHTTTTCCCCCHHHHHHHHHHHTC--SCEEECCTTTCTTHHHH
T ss_pred hcccccc-hhhcccccCcccCHHHHHHHHHHcCC--cEEEEeeCCCCCCHHHH
Confidence 9763211 000 12334455555554 37899999999999984
No 169
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.58 E-value=9.9e-16 Score=156.61 Aligned_cols=152 Identities=14% Similarity=0.050 Sum_probs=96.0
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
..+.+||+++|.+|+|||||+++|++..-.. ... ...+.+. .....+.
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~----------------------------~~~---~t~~~~~-~~~~~~~ 68 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSE----------------------------GYD---PTVENTY-SKIVTLG 68 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS----------------------------CCC---CCSEEEE-EEEEC--
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCC----------------------------CCC---CccceEE-EEEEEEC
Confidence 3567999999999999999999999721100 000 0011111 1112223
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHH----cCCCeEEEEEecCC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHL----LRIKHIIIAVNKMD 475 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~----~~~~~iivviNK~D 475 (967)
.....+.||||||+++|...+...+..+|++|+|+|+++ ... ......+..+.. .++| +++|+||+|
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~D 140 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTS-------LHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKAD 140 (201)
T ss_dssp --CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTC-------HHHHHHHHHHHHHHHC-----CCC-EEEEEECTT
T ss_pred CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 345678999999999887777778899999999999987 111 111222222221 2444 999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+..+... .+...+.+.++. +++++||++|.|++++
T Consensus 141 l~~~~~v~~----~~~~~~~~~~~~---~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 141 LSPEREVQA----VEGKKLAESWGA---TFMESSARENQLTQGI 177 (201)
T ss_dssp CGGGCCSCH----HHHHHHHHHHTC---EEEECCTTCHHHHHHH
T ss_pred CccccccCH----HHHHHHHHHhCC---eEEEEeCCCCCCHHHH
Confidence 875432111 223445555665 8999999999999985
No 170
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=150.60 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=93.9
Q ss_pred ccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 319 FKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 319 ~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
......++|+++|.+|+|||||+++|++...... ...+++.+.....
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~ 64 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSA---------------------------------HEPENPEDTYERR 64 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGG---------------------------------GTTTSCTTEEEEE
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCcc---------------------------------CCCCcccceEEEE
Confidence 3455779999999999999999999975222110 0011222222222
Q ss_pred eecCC--ceEEEeeChhhHHHHH-HHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEE
Q psy3751 399 FNTPK--RKFIIADTPGHEQYTR-NMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAV 471 (967)
Q Consensus 399 ~~~~~--~~~~liDtpG~~~~~~-~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivvi 471 (967)
+..++ ..+.+|||||++++.. .....++.+|++|+|+|+++.. . .......+..+.. .++| +|+|.
T Consensus 65 ~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~-----s-~~~~~~~~~~i~~~~~~~~~p-iilv~ 137 (195)
T 3cbq_A 65 IMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRR-----S-FSKVPETLLRLRAGRPHHDLP-VILVG 137 (195)
T ss_dssp EEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHH-----H-HHTHHHHHHHHHHHSTTSCCC-EEEEE
T ss_pred EEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHH-----H-HHHHHHHHHHHHHhcCCCCCC-EEEEe
Confidence 33333 4577899999877654 2334467899999999998711 0 1112223322222 2444 99999
Q ss_pred ecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 472 NKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 472 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
||+|+.+..+... ++.+.+.+.+++ +++++||++|.|++++
T Consensus 138 nK~Dl~~~~~v~~----~~~~~~a~~~~~---~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 138 NKSDLARSREVSL----EEGRHLAGTLSC---KHIETSAALHHNTREL 178 (195)
T ss_dssp ECTTCTTTCCSCH----HHHHHHHHHTTC---EEEEEBTTTTBSHHHH
T ss_pred echhccccCCcCH----HHHHHHHHHhCC---EEEEEcCCCCCCHHHH
Confidence 9999975322111 223445555554 8899999999999985
No 171
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.58 E-value=6.8e-15 Score=170.44 Aligned_cols=182 Identities=16% Similarity=0.103 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLI 98 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~ 98 (967)
++..+++.++.+++.+.. +++++++|||+||+|+++++.++ +.++.++|+|+|...++..+.++++++++|++++
T Consensus 192 ~~~~~~~~i~~ir~~~~~-~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~ 266 (503)
T 2ywb_A 192 PEHVLEELLREVRERAGK-DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHGLLRLGEREEVEGALRALGVNLL 266 (503)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECSCSCTTHHHHHHHHHHHTTCCEE
T ss_pred chhhhHHHHHhhhhhccC-ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCCCCChHHHHHHHHHHHHhCCCEE
Confidence 556667777888877654 78999999999999999999998 5689999999998878889999999999999999
Q ss_pred EEecchhhhhcccccCCC--CcccchhhcHHHHHHHHHHc-CCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCc
Q psy3751 99 VRSVEDSIMKGTVRLRKP--NTDSRNAAQSITLLETIKEF-KFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p 175 (967)
++..+..+.........| .+..|+..+...+.+.+++. |.+.+++||+.+|..+...+ .... . .++..+
T Consensus 267 vv~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~~Et~~~---g~~~---~--iks~~~ 338 (503)
T 2ywb_A 267 VVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGG---HGAA---K--IKSHHN 338 (503)
T ss_dssp EEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC-----------------------
T ss_pred EEECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccchhhccC---Cccc---c--cccccc
Confidence 998876554322111111 12233334556677778888 99999999988876543211 0000 0 000000
Q ss_pred cccccccccC-CCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 176 ELWNLYNTRV-HPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 176 ~~~~~~~~~~-~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
+ ... .......++||.+|+++||++|++++|+|++.++
T Consensus 339 -l-----~~l~~~~~~~ii~PL~~l~K~EVr~~a~~~glp~~i~~ 377 (503)
T 2ywb_A 339 -V-----GGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRL 377 (503)
T ss_dssp --------CCCSSCCCEEECTTTTCCHHHHHHHHHHTTCCHHHHS
T ss_pred -c-----ccccccccCceEehhhcCCHHHHHHHHHHcCCChhhee
Confidence 0 000 1122468999999999999999999999988777
No 172
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.57 E-value=1.2e-14 Score=146.87 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=87.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|.+|+|||||+++|++..-. ... .+.+.+.....+..+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~-----~~t~~~~~~~~~~~~ 65 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFV-----------------------------DEY-----DPTIEDSYRKQVVID 65 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-----------------------------SCC-----CTTCCEEEEEEEEET
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCc-----------------------------ccc-----CCccceEEEEEEEEC
Confidence 5589999999999999999999872110 000 000001111123333
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHH----cCCCeEEEEEecCC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHL----LRIKHIIIAVNKMD 475 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~----~~~~~iivviNK~D 475 (967)
+ ..+.+|||||+++|...+...+..+|++++|+|+++ ... ......+..+.. .+++ +++|+||+|
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~D 137 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN-------SKSFADINLYREQIKRVKDSDDVP-MVLVGNKCD 137 (190)
T ss_dssp TEEEEEEEEECCC-----------CTTCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTT
T ss_pred CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC-------HHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCc
Confidence 3 458899999999988888888899999999999987 221 112222222222 2444 999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+... ..++++++.+.+++ +++++||++|.|++++
T Consensus 138 l~~~~~-----~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 138 LPTRTV-----DTKQAHELAKSYGI---PFIETSAKTRQGVEDA 173 (190)
T ss_dssp CSCCCS-----CHHHHHHHHHHHTC---CEEECCTTTCTTHHHH
T ss_pred CCcccC-----CHHHHHHHHHHcCC---eEEEEeCCCCCCHHHH
Confidence 875211 12234455566665 7999999999999985
No 173
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.57 E-value=4.7e-15 Score=148.73 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=92.7
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+++|+... ..... .++ +.+.....+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~----------~~t----------------------~~~~~~~~~~~ 51 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTDY----------VPT----------------------VFDNFSANVVV 51 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSC--CC------------------------------------------CBCCCC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------CCe----------------------eeeeEEEEEEE
Confidence 356899999999999999999998622 10000 000 00000011222
Q ss_pred C--CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-HH-HHHHHHHHc-CCCeEEEEEecCCc
Q psy3751 402 P--KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-TK-RHSIIAHLL-RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t~-~~~~~~~~~-~~~~iivviNK~D~ 476 (967)
+ ...+.++||||+++|.......++.+|++++|+|+++ ...-+ .. ..+..+... .-.++++|+||+|+
T Consensus 52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS-------KASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp ------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 2 3456799999999988777778899999999999987 21111 11 122223322 22349999999999
Q ss_pred cCcCHHHHH------HHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYK------RIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~------~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+.... ...++...+.+.++. .+++++||++|.|++++
T Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 171 (182)
T 3bwd_D 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGA--PAYIECSSKSQENVKGV 171 (182)
T ss_dssp HTCHHHHHHC--CCCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHHH
T ss_pred hcCcccccccccCCCCCHHHHHHHHHHcCC--CEEEEEECCCCCCHHHH
Confidence 764321000 012334455555553 37899999999999984
No 174
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.57 E-value=6.2e-15 Score=157.25 Aligned_cols=158 Identities=16% Similarity=0.107 Sum_probs=99.5
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
..+.++|+++|++|+|||||+|+|++...... . ....++|.+.....+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~----------------------------~---~~~~~~t~~~~~~~~~ 67 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFES----------------------------K---LGSQTLTKTCSKSQGS 67 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCC----------------------------C---TTSCCCCCSCEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCccc----------------------------C---CCCCceeeeeEEEEEE
Confidence 34668999999999999999999997332110 0 0011245554445566
Q ss_pred cCCceEEEeeChhhHHH-----------HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc-----CC
Q psy3751 401 TPKRKFIIADTPGHEQY-----------TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL-----RI 464 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~-----~~ 464 (967)
+++.+++||||||+.++ ...+...++.+|++|+|+|++. +..+....+..+... +.
T Consensus 68 ~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--------~~~~~~~~~~~l~~~~~~~~~~ 139 (260)
T 2xtp_A 68 WGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--------YTSQDQQAAQRVKEIFGEDAMG 139 (260)
T ss_dssp ETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--------CCHHHHHHHHHHHHHHCGGGGG
T ss_pred eCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--------CCHHHHHHHHHHHHHhCchhhc
Confidence 77889999999997653 3334446788999999999974 223444444444333 44
Q ss_pred CeEEEEEe-cCCccCcCHHHHHHHH----HHHHHHHHHcCCccceE--EeccccCCCcccccc
Q psy3751 465 KHIIIAVN-KMDLINYNQIFYKRIV----YAYKKFAEDIHFQNINT--IPISALNGDNIISAS 520 (967)
Q Consensus 465 ~~iivviN-K~D~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~i--i~iSa~~g~gi~~l~ 520 (967)
+ .|+++| |+|+.+.+... .+. .+++.+++.++....++ +++||++|.|++++.
T Consensus 140 ~-~i~vv~nK~Dl~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~ 199 (260)
T 2xtp_A 140 H-TIVLFTHKEDLNGGSLMD--YMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELM 199 (260)
T ss_dssp G-EEEEEECGGGGTTCCHHH--HHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHH
T ss_pred c-EEEEEEcccccCCccHHH--HHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHH
Confidence 5 566666 99998543221 111 23444555555321112 899999999999853
No 175
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.57 E-value=1.3e-16 Score=162.80 Aligned_cols=151 Identities=22% Similarity=0.240 Sum_probs=93.7
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...+||+++|.+|+|||||+++|++..- ..+...+++.+.....+..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 77 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTY---------------------------------TESYISTIGVDFKIRTIEL 77 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCC---------------------------------CCHHHHHHCCSEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC---------------------------------CCCcCCcccceEEEEEEEE
Confidence 4679999999999999999999986211 1112233344444444555
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHcC--CCeEEEEEecCCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLLR--IKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~~--~~~iivviNK~D~ 476 (967)
++ ..+.|+||||+++|...+...+..+|++|+|+|+++ ... ......+..+.... -.++++|+||+|+
T Consensus 78 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 78 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD-------QESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp TTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC-------SHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence 54 568999999999887777777899999999999987 221 22233333333321 2458999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+... .+...+.+.+++ +++++||++|.|++++
T Consensus 151 ~~~~~v~~----~~~~~~~~~~~~---~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 151 TTKKVVDY----TTAKEFADSLGI---PFLETSAKNATNVEQS 186 (199)
T ss_dssp C--CCCCS----CC-CHHHHTTTC---CBCCCCC---HHHHHH
T ss_pred CccccCCH----HHHHHHHHHcCC---eEEEEECCCCCCHHHH
Confidence 75321110 122334555554 7899999999999984
No 176
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.57 E-value=1.4e-14 Score=155.43 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=87.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+|+|++........ .........+++++.....+..
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-------------------------~~~~~~~~~t~~~~~~~~~~~~ 60 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY-------------------------PGPSHRIKKTVQVEQSKVLIKE 60 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC----------------------------------------CCCEEEEEEECC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCC-------------------------CCcccccCCceEEEEEEEEEec
Confidence 346899999999999999999998632211000 0000011233444444444444
Q ss_pred CC--ceEEEeeChhhH---------------------HHHHHHHhh------cccCCEEEEEEeCCCCCCCCCCCchhhH
Q psy3751 402 PK--RKFIIADTPGHE---------------------QYTRNMITG------ASTADAVIILIDASKIKFNPSVNLLTQT 452 (967)
Q Consensus 402 ~~--~~~~liDtpG~~---------------------~~~~~~~~~------~~~aD~~ilVvda~~~~~~~~~g~~~~t 452 (967)
++ .+++++||||+. .|....... -..+|+++++|+.... +.....
T Consensus 61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~------~~~~~d 134 (274)
T 3t5d_A 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH------GLKPLD 134 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS------SCCHHH
T ss_pred CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC------CCCHHH
Confidence 44 378999999972 222221111 1237899999976541 555666
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 453 KRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 453 ~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+.+..+.. ++| +|+|+||+|+.. .......++.+.+.++..++ +++++||.+|+|+.++
T Consensus 135 ~~~l~~l~~-~~p-vi~V~nK~D~~~--~~e~~~~~~~i~~~l~~~~i---~v~~~sa~~~~~~~~l 194 (274)
T 3t5d_A 135 IEFMKRLHE-KVN-IIPLIAKADTLT--PEECQQFKKQIMKEIQEHKI---KIYEFPETDDEEENKL 194 (274)
T ss_dssp HHHHHHHTT-TSC-EEEEESSGGGSC--HHHHHHHHHHHHHHHHHTTC---CCCCC-----------
T ss_pred HHHHHHHhc-cCC-EEEEEeccCCCC--HHHHHHHHHHHHHHHHHcCC---eEEcCCCCCChhHHHH
Confidence 666655554 555 999999999974 33344555556666666555 7899999999999874
No 177
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.3e-14 Score=148.89 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=95.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..+||+++|.+|+|||||+++|++..-.. +....++.+. ...+..+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~---------------------------------~~~~t~~~~~-~~~~~~~ 69 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE---------------------------------VYVPTVFENY-VADIEVD 69 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----------------------------------------CCEE-EEEEEET
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC---------------------------------cCCCcccceE-EEEEEEC
Confidence 45799999999999999999999722110 0000001111 0112333
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccC
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~ 478 (967)
+ ..+.++||||+++|.......+..+|++|+|+|+++.. .+.......+..+... ++| +++|+||+|+.+
T Consensus 70 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 143 (207)
T 2fv8_A 70 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD-----SLENIPEKWVPEVKHFCPNVP-IILVANKKDLRS 143 (207)
T ss_dssp TEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH-----HHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGG
T ss_pred CEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhc
Confidence 3 46889999999988777777789999999999998711 1111112233333332 445 999999999976
Q ss_pred cCHHHHHHH---------HHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRI---------VYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... ..+.+ .++...+.+.++. .+++++||++|.|++++
T Consensus 144 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~el 190 (207)
T 2fv8_A 144 DEH-VRTELARMKQEPVRTDDGRAMAVRIQA--YDYLECSAKTKEGVREV 190 (207)
T ss_dssp CHH-HHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHH
T ss_pred ccc-chhhhhhcccCCCCHHHHHHHHHhcCC--CEEEEeeCCCCCCHHHH
Confidence 421 11111 1123334444443 37899999999999984
No 178
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=148.48 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=83.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|++.. +. .+....+ .+.....+..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~------------------------~~---------~~~~~t~-~~~~~~~~~~ 77 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGA------------------------FP---------ESYTPTV-FERYMVNLQV 77 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC----------------------------------------CCCC-CEEEEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCC------------------------CC---------CCCCCcc-ceeEEEEEEE
Confidence 457899999999999999999998611 00 0000000 0001112233
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-HH-HHHHHHHH-cCCCeEEEEEecCCc
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-TK-RHSIIAHL-LRIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t~-~~~~~~~~-~~~~~iivviNK~D~ 476 (967)
++ ..+.+|||||+++|.......+..+|++|+|+|+++ ...-+ .. ..+..+.. ..-.++|+|+||+|+
T Consensus 78 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 78 KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS-------PNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp TTEEEEEEEEEC---------------CEEEEEEEEETTC-------HHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred CCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC-------HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 33 468899999999998877778899999999999987 21111 11 12222222 222349999999999
Q ss_pred cCcCHHHHHHH---------HHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRI---------VYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+... ..+.+ .++...+.+.++. .+++++||++|.|++++
T Consensus 151 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~el 199 (214)
T 2j1l_A 151 RKDKS-LVNKLRRNGLEPVTYHRGQEMARSVGA--VAYLECSARLHDNVHAV 199 (214)
T ss_dssp GSCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECBTTTTBSHHHH
T ss_pred hccch-hhhhhcccccCcccHHHHHHHHHhcCC--CEEEEecCCCCCCHHHH
Confidence 86422 11111 1234555556654 37899999999999985
No 179
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.56 E-value=7e-15 Score=151.62 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=96.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+++|++.. +. .+..+. .|... ...+..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~------------------------~~----~~~~~t---~~~~~---~~~~~~ 52 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNK------------------------FP----TDYIPT---VFDNF---SANVAV 52 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSC------------------------CC----SSCCCS---SCCCE---EEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC------------------------CC----ccCCCc---cceeE---EEEEEE
Confidence 467899999999999999999998621 00 000000 01111 111223
Q ss_pred C--CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHH-HHHHHHHHc--CCCeEEEEEecCC
Q psy3751 402 P--KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTK-RHSIIAHLL--RIKHIIIAVNKMD 475 (967)
Q Consensus 402 ~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~-~~~~~~~~~--~~~~iivviNK~D 475 (967)
+ ...+.+|||||+++|.......++.+|++|+|+|+++ ... .... ..+..+... ++| +++|+||+|
T Consensus 53 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 124 (212)
T 2j0v_A 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS-------KASYENVLKKWMPELRRFAPNVP-IVLVGTKLD 124 (212)
T ss_dssp SSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHH
T ss_pred CCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHH
Confidence 3 3578999999999887777778899999999999987 211 1111 222333332 444 999999999
Q ss_pred ccCcCHHHHHH-----HHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 476 LINYNQIFYKR-----IVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+.... ... ..++...+.+.++. .+++++||++|.|++++
T Consensus 125 l~~~~~~-~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l 170 (212)
T 2j0v_A 125 LRDDKGY-LADHTNVITSTQGEELRKQIGA--AAYIECSSKTQQNVKAV 170 (212)
T ss_dssp HHTCHHH-HHTCSSCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHHH
T ss_pred hhhCccc-cccccCCCCHHHHHHHHHHcCC--ceEEEccCCCCCCHHHH
Confidence 9764221 000 12334455566663 37899999999999985
No 180
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.56 E-value=5.1e-15 Score=162.83 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=97.1
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.++.++|+++|++|+|||||+++|++. .+. . ..-|++..+..+.
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~------------------------~~~-----~-------~~pT~~~~~~~~~ 205 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLG------------------------EIV-----T-------TIPTIGFNVETVE 205 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSS------------------------CCE-----E-------EEEETTEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCC------------------------CCC-----C-------cccccceEEEEEe
Confidence 346689999999999999999999861 110 0 0114444455566
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCCccC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D~~~ 478 (967)
..+..+.|+||||+++|.......+..+|++|+|+|+++.. .+.........+.... .-.++|+|+||+|+.+
T Consensus 206 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~-----s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 206 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE-----RVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp ETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS-----SHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH-----HHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 77889999999999998877778889999999999998621 2222222222222222 1345999999999986
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 479 YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 479 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.... +++...+. ........++++++||++|.|++++
T Consensus 281 ~~~~--~~i~~~~~--~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 281 AMNA--AEITDKLG--LHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp CCCH--HHHHHHHT--CTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred ccCH--HHHHHHhc--hhhhhcCCCEEEEEECCCCcCHHHH
Confidence 4321 22222111 0011113568999999999999985
No 181
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.56 E-value=2.9e-15 Score=155.58 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=100.5
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....+||+++|.+|+|||||+++|+... +. .......|.|.......+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~------------------------~~-------~~~~~t~~~~~~~~~~~~ 59 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGE------------------------FE-------KKYVATLGVEVHPLVFHT 59 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHH------------------------HT-------CEEETTTTEEEEEEEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCC------------------------CC-------CCCCCccceeEEEEEEEE
Confidence 34567899999999999999999976410 00 000112345555444444
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHH-HcCCCeEEEEEecCCcc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAH-LLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~-~~~~~~iivviNK~D~~ 477 (967)
......+.+|||||++.|.......++.+|++|+|+|+++ ... ......+..+. ...-.++|+|+||+|+.
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS-------RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC-------HHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 4455688999999999887666677789999999999997 211 11122222222 22233499999999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.... .+...+.+..++ +++++||++|.|++++
T Consensus 133 ~~~~~------~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 133 DRKVK------AKSIVFHRKKNL---QYYDISAKSNYNFEKP 165 (221)
T ss_dssp SCSSC------GGGCCHHHHHTC---EEEECBGGGTBTTTHH
T ss_pred ccccc------HHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 53211 112233444454 8999999999999985
No 182
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.56 E-value=1e-14 Score=168.16 Aligned_cols=146 Identities=21% Similarity=0.268 Sum_probs=102.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+++|++|+|||||+|+|++..-. ......|+|.+..+..+++.
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~--------------------------------~v~~~~g~t~~~~~~~~~~~ 69 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS--------------------------------IVEDTPGVTRDRIYSSAEWL 69 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-------------------------------------------CEEEECTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc--------------------------------ccCCCCCcceeEEEEEEEEC
Confidence 3568999999999999999999872111 01223578888888888888
Q ss_pred CceEEEeeChh--------hHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 403 KRKFIIADTPG--------HEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 403 ~~~~~liDtpG--------~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
+..+.+||||| ++.+...+..++..+|++|+|+|+.+ +......+.+..++..+.+ +|+|+||+
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~-------~~~~~d~~l~~~l~~~~~p-vilV~NK~ 141 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE-------GVTAADEEVAKILYRTKKP-VVLAVNKL 141 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSS-------CSCHHHHHHHHHHTTCCSC-EEEEEECC
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCC-------CCChHHHHHHHHHHHcCCC-EEEEEECc
Confidence 89999999999 77888888888999999999999988 7777777777777766766 89999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+.+... ...++ ..+++. ..+++||++|.|+.++
T Consensus 142 D~~~~~~--------~~~e~-~~lg~~--~~~~iSA~~g~gv~~L 175 (456)
T 4dcu_A 142 DNTEMRA--------NIYDF-YSLGFG--EPYPISGTHGLGLGDL 175 (456)
T ss_dssp -----------------CCS-GGGSSS--SEEECCTTTCTTHHHH
T ss_pred cchhhhh--------hHHHH-HHcCCC--ceEEeecccccchHHH
Confidence 9874311 11111 133443 4579999999999984
No 183
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.55 E-value=2.3e-14 Score=144.77 Aligned_cols=150 Identities=27% Similarity=0.309 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
++|+++|++|+|||||+++|++..- ......|+|.+.....+ .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~---------------------------------~~~~~~~~t~~~~~~~~--~-- 44 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV---------------------------------RRGKRPGVTRKIIEIEW--K-- 44 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC---------------------------------SSSSSTTCTTSCEEEEE--T--
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC---------------------------------ccCCCCCccceeEEEec--C--
Confidence 6899999999999999999987211 01111234333222222 2
Q ss_pred eEEEeeChh-----------hHHHHHHHH---hh-cccCCEEEEEEeCCCCCC--C--CCCCchhhHHHHHHHHHHcCCC
Q psy3751 405 KFIIADTPG-----------HEQYTRNMI---TG-ASTADAVIILIDASKIKF--N--PSVNLLTQTKRHSIIAHLLRIK 465 (967)
Q Consensus 405 ~~~liDtpG-----------~~~~~~~~~---~~-~~~aD~~ilVvda~~~~~--~--~~~g~~~~t~~~~~~~~~~~~~ 465 (967)
.+.++|||| ++.|...+. .. +..+++++.|+|+....- + ...+...+..+.+..+...++|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 689999999 555554433 33 556788889998764100 0 0001112233344444455666
Q ss_pred eEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCc----cceEEeccccCCCccccc
Q psy3751 466 HIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQ----NINTIPISALNGDNIISA 519 (967)
Q Consensus 466 ~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~ii~iSa~~g~gi~~l 519 (967)
+++|+||+|+.+.. .+..+.+.+.++.. ..+++++||++|.|++++
T Consensus 125 -iilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 174 (190)
T 2cxx_A 125 -TIVAVNKLDKIKNV-------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERL 174 (190)
T ss_dssp -EEEEEECGGGCSCH-------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHH
T ss_pred -eEEEeehHhccCcH-------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHH
Confidence 99999999998643 12334455555652 236899999999999985
No 184
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.55 E-value=1.3e-14 Score=146.07 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=92.8
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
...+.+||+++|.+|+|||||+++|++.. +.- ...+ |.+.....+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~------------------------~~~----~~~~-------t~~~~~~~~ 60 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGT------------------------YVQ----EESP-------EGGRFKKEI 60 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSS------------------------CCC----CCCT-------TCEEEEEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCC------------------------CCC----CcCC-------CcceEEEEE
Confidence 44577999999999999999999998721 100 0000 000011223
Q ss_pred ecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH-HHHHHHHHHc----CCCeEEEEEe
Q psy3751 400 NTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT-KRHSIIAHLL----RIKHIIIAVN 472 (967)
Q Consensus 400 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t-~~~~~~~~~~----~~~~iivviN 472 (967)
..++ ..+.+|||||+++|. .++.+|++++|+|+++ ...-+. ...+..+... ++ ++++|.|
T Consensus 61 ~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~-piilv~n 127 (184)
T 3ihw_A 61 VVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED-------EISFQTVYNYFLRLCSFRNASEV-PMVLVGT 127 (184)
T ss_dssp EETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC-------HHHHHHHHHHHHHHHTTSCGGGS-CEEEEEE
T ss_pred EECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCC-CEEEEEE
Confidence 3344 456789999998876 5577999999999997 221111 2233333332 33 4899999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+.+..+. ....++...+.+.++. .+++++||++|.|++++
T Consensus 128 K~Dl~~~~~~--~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~gv~~l 170 (184)
T 3ihw_A 128 QDAISAANPR--VIDDSRARKLSTDLKR--CTYYETCATYGLNVERV 170 (184)
T ss_dssp CTTCBTTBCC--CSCHHHHHHHHHHTTT--CEEEEEBTTTTBTHHHH
T ss_pred Cccccccccc--ccCHHHHHHHHHHcCC--CeEEEecCCCCCCHHHH
Confidence 9998521110 0011234455666652 48899999999999985
No 185
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.55 E-value=9.7e-15 Score=150.76 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=97.2
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeec-eee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVA-YRY 398 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~ 398 (967)
.....+||+++|.+|+|||||+++|++.. +. .+....+..+.. ...
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~------------------------~~---------~~~~~t~~~~~~~~~~ 69 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDC------------------------YP---------ETYVPTVFENYTACLE 69 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSC------------------------CC---------SSCCCCSEEEEEEEEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCC------------------------CC---------CCcCCeeeeeEEEEEE
Confidence 33467899999999999999999998721 10 000011111111 111
Q ss_pred eecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh--HHHHHHHHHHc-CCCeEEEEEecCC
Q psy3751 399 FNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ--TKRHSIIAHLL-RIKHIIIAVNKMD 475 (967)
Q Consensus 399 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~--t~~~~~~~~~~-~~~~iivviNK~D 475 (967)
+......+.||||||+++|.......++.+|++|+|+|+++ ...-. ....+..+... .-.++++|+||+|
T Consensus 70 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 142 (214)
T 3q3j_B 70 TEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR-------PETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142 (214)
T ss_dssp C--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC-------THHHHHHHTHHHHHHHHHCTTSEEEEEEECGG
T ss_pred ECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC-------HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 22234578899999999988777778899999999999987 21111 12233333332 2345999999999
Q ss_pred ccCcCHHHH--------HHHHHHHHHHHHHcCCccceEEeccccCCCc-cccc
Q psy3751 476 LINYNQIFY--------KRIVYAYKKFAEDIHFQNINTIPISALNGDN-IISA 519 (967)
Q Consensus 476 ~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~g-i~~l 519 (967)
+.+...... ....++...+.+.+++ .+++++||++|.| ++++
T Consensus 143 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~SA~~g~g~v~~l 193 (214)
T 3q3j_B 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA--EIYLEGSAFTSEKSIHSI 193 (214)
T ss_dssp GGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC--SEEEECCTTTCHHHHHHH
T ss_pred hccchhhhhhhcccccCccCHHHHHHHHHHcCC--CEEEEeccCCCcccHHHH
Confidence 975311000 0112334455666654 2789999999998 9985
No 186
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1.4e-14 Score=147.44 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=92.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEee-ceeeee
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDV-AYRYFN 400 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~ 400 (967)
...++|+++|.+|+|||||+++|++..-.. +....++.+. ....+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~ 72 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW---------------------------------EYDPTLESTYRHQATID 72 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS---------------------------------CCCTTCCEEEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc---------------------------------ccCCCCCceEEEEEEEC
Confidence 456899999999999999999999721100 0000011111 011122
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecCCc
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKMDL 476 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~D~ 476 (967)
.....+.++||||+++ .......+..+|++++|+|+++.. ........+..+.. .++| +++|+||+|+
T Consensus 73 ~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~------s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl 144 (196)
T 2atv_A 73 DEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG------SFEEVLPLKNILDEIKKPKNVT-LILVGNKADL 144 (196)
T ss_dssp TEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH------HHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH------HHHHHHHHHHHHHHhhCCCCCc-EEEEEECccc
Confidence 2235688999999887 444556678899999999998721 11122222222222 2444 9999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCC-ccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGD-NIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~-gi~~l 519 (967)
.+..+... ++...+.+.+++ +++++||++|. |++++
T Consensus 145 ~~~~~v~~----~~~~~~~~~~~~---~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 145 DHSRQVST----EEGEKLATELAC---AFYECSACTGEGNITEI 181 (196)
T ss_dssp GGGCCSCH----HHHHHHHHHHTS---EEEECCTTTCTTCHHHH
T ss_pred ccccccCH----HHHHHHHHHhCC---eEEEECCCcCCcCHHHH
Confidence 76322111 223344555554 89999999999 99985
No 187
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.55 E-value=3.3e-15 Score=170.64 Aligned_cols=145 Identities=23% Similarity=0.223 Sum_probs=93.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
+.++|+++|++|+|||||+|+|++....+ .....|+|.+.....+..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~--------------------------------v~~~~gtT~d~~~~~i~~~ 270 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI--------------------------------VTDLPGTTRDVVESQLVVG 270 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSC--------------------------------CSCCTTCCHHHHHHEEEET
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccc--------------------------------ccCCCCeeEEEEEEEEEEC
Confidence 44789999999999999999999722111 0112356666666667778
Q ss_pred CceEEEeeChhhHHHH--------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 403 KRKFIIADTPGHEQYT--------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
+..+.+|||||+.++. ..+...+..+|++++|+|+++ +...+..+.+..+ ...++|+|+||+
T Consensus 271 g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~-------~~~~~~~~i~~~l---~~~piivV~NK~ 340 (462)
T 3geh_A 271 GIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT-------GWTTGDQEIYEQV---KHRPLILVMNKI 340 (462)
T ss_dssp TEEEEECC--------------------CCCCSCSEEEEEEETTT-------CSCHHHHHHHHHH---TTSCEEEEEECT
T ss_pred CEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC-------CCCHHHHHHHHhc---cCCcEEEEEECC
Confidence 8899999999986643 234456788999999999998 5545544444333 334699999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+.+..... .++.+. ...+++++||++|.|++++.
T Consensus 341 Dl~~~~~~~----------~~~~~~-~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 341 DLVEKQLIT----------SLEYPE-NITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp TSSCGGGST----------TCCCCT-TCCCEEEEBTTTTBSHHHHH
T ss_pred CCCcchhhH----------HHHHhc-cCCcEEEEECCCCCCHHHHH
Confidence 998643210 111111 23589999999999999854
No 188
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.55 E-value=4.6e-15 Score=170.16 Aligned_cols=147 Identities=26% Similarity=0.337 Sum_probs=102.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|.+|+|||||+|+|++....+ .....|+|.+.....+..+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~--------------------------------vs~~~gTT~d~~~~~i~~~ 289 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI--------------------------------VTDIPGTTRDVISEEIVIR 289 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCC--------------------------------CCCSSCCSSCSCCEEEEET
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCc--------------------------------cCCCCCeeeeeEEEEEecC
Confidence 34799999999999999999999732111 1112466777777777888
Q ss_pred CceEEEeeChhhH-HH--------HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 403 KRKFIIADTPGHE-QY--------TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 403 ~~~~~liDtpG~~-~~--------~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
+..+.|+||||+. ++ +..+...+..+|++|+|+|+++ ....+..+.+.. +.-.++|+|+||
T Consensus 290 g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~-------~~s~~~~~il~~---l~~~piivV~NK 359 (482)
T 1xzp_A 290 GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS-------PLDEEDRKILER---IKNKRYLVVINK 359 (482)
T ss_dssp TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS-------CCCHHHHHHHHH---HTTSSEEEEEEE
T ss_pred CeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCC-------CCCHHHHHHHHH---hcCCCEEEEEEC
Confidence 8899999999987 43 2445667889999999999987 333333333322 233459999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
+|+.+... .+ ++..++ + ...+++++||++|.|++++.+
T Consensus 360 ~DL~~~~~--~~----~~~~~~---~-~~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 360 VDVVEKIN--EE----EIKNKL---G-TDRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp CSSCCCCC--HH----HHHHHH---T-CSTTEEEEEGGGTCCHHHHHH
T ss_pred cccccccC--HH----HHHHHh---c-CCCcEEEEECCCCCCHHHHHH
Confidence 99975311 11 222222 2 124789999999999998643
No 189
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.54 E-value=6.7e-14 Score=155.79 Aligned_cols=217 Identities=16% Similarity=0.220 Sum_probs=141.0
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchhhhhcc-----c
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDSIMKGT-----V 111 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~~~~~~-----~ 111 (967)
++++|+||||+||+|+|+++.+.+ +.++.++|+|+|. ++..++++++|+++|+ +++++.....+.... .
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g~~V~av~vd~g~--~~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~ 75 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---RAEVIAFTADIGQ--GEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMR 75 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---TCEEEEEEEESSC--SSCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHH
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---CCcEEEEEEeCCC--HHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHhhHHHHH
Confidence 368899999999999999998874 3478999999998 6779999999999999 799887765443211 1
Q ss_pred cc------CCCCcccchhhcHHHHHHHHHHcCCcEEEEeccch--hhHhhhccccccccccCCCCCCCCCCccccccccc
Q psy3751 112 RL------RKPNTDSRNAAQSITLLETIKEFKFDACIGGARRD--EEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNT 183 (967)
Q Consensus 112 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~d--es~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 183 (967)
.. +......|+.++...+.+.+++.|.+++++|++.| |. .|....+... .|
T Consensus 76 ~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~nDq-~~f~~g~~~l------------~p-------- 134 (400)
T 1kor_A 76 AGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQ-VRFELTAYAL------------KP-------- 134 (400)
T ss_dssp TTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHH-HHHHHHHHHH------------CT--------
T ss_pred cCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCCcccH-HHHHHHHHhc------------CC--------
Confidence 00 11111225555667788999999999999999996 33 2221111000 00
Q ss_pred cCCCCCceEEeeCCCC---cHHHHHHHHHHcCCCCCCccccccchhhhcCCEeecc----------------cC----CC
Q psy3751 184 RVHPGENIRVFPISNW---TELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPF----------------TN----LT 240 (967)
Q Consensus 184 ~~~~~~~~~i~Pl~~w---t~~dV~~yi~~~~lp~~~lY~~~~~~~~~~~~~l~~v----------------~~----~~ 240 (967)
....++||.+| +++|||+|++++|+|+..-.. .++....+ ++.. +. ..
T Consensus 135 -----~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~---~pys~d~n-llg~s~e~~~Led~~~~~p~~~~~~~~~ 205 (400)
T 1kor_A 135 -----DIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQE---KPYSMDAN-LLHISYEGGVLEDPWAEPPKGMFRMTQD 205 (400)
T ss_dssp -----TCEEECGGGTCCCCSHHHHHHHHHHTTCCCC--------CCEEEEC-SSCEEEESGGGGCTTSCCCTTCCSSSCC
T ss_pred -----CCEEEEeecccccCCHHHHHHHHHHcCCCcccCCC---CCCcCcch-hcccchhhhHHHhHHhcCCcccceeecC
Confidence 12458999999 999999999999999874221 11111111 0000 00 11
Q ss_pred CCCCCccceeeeEEEeccccccccccccCCcCChHHHHHhhhhhhhhhhccccc
Q psy3751 241 PAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGATRI 294 (967)
Q Consensus 241 ~~~~~~~~~~~~~r~~~~gc~~~~~~v~s~~~tl~~~i~e~~~~~~~e~~~~~~ 294 (967)
|..+.+++.....+|..-+|+.|+.. ..++.+.+.++. ....+.+..+.
T Consensus 206 p~~~~~~~~~~~i~f~~g~~v~~~g~----~~~~~~li~~ln-~~~~~~GiGr~ 254 (400)
T 1kor_A 206 PEEAPDAPEYVEVEFFEGDPVAVNGE----RLSPAALLQRLN-EIGGRHGVGRV 254 (400)
T ss_dssp GGGSCSSCEEEEEEEETTEEEEETTE----ECCHHHHHHHHH-HHHHHTTCCEE
T ss_pred hhHCCCCceEEEEEeecCceEeccCc----cCCHHHHHHHHH-HHHHhcCCChh
Confidence 34445667777899999999999865 345666666642 33444444333
No 190
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.54 E-value=1.9e-14 Score=151.70 Aligned_cols=157 Identities=13% Similarity=0.050 Sum_probs=99.3
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
..+.++|+++|++|+|||||+|+|++....+.. ....|+|.+.....+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~-------------------------------~~~~~~T~~~~~~~~~ 66 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSR-------------------------------LGATSVTRACTTGSRR 66 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC----------------------------------------CCSCEEEEEE
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCcccc-------------------------------CCCCCccccEEEEEEE
Confidence 346799999999999999999999984322100 0012345555455567
Q ss_pred cCCceEEEeeChhh--------HHHHHHHHhhc----ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc-C----
Q psy3751 401 TPKRKFIIADTPGH--------EQYTRNMITGA----STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL-R---- 463 (967)
Q Consensus 401 ~~~~~~~liDtpG~--------~~~~~~~~~~~----~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~-~---- 463 (967)
.++..+++|||||. +++...+...+ ..+|++|+|+|+.. +.......+..+... +
T Consensus 67 ~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--------~~~~~~~~~~~l~~~~~~~~~ 138 (247)
T 3lxw_A 67 WDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR--------FTAQDQQAVRQVRDMFGEDVL 138 (247)
T ss_dssp ETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB--------CCHHHHHHHHHHHHHHCGGGG
T ss_pred ECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC--------CCHHHHHHHHHHHHHhChhhh
Confidence 77889999999995 45555555554 89999999999974 223334434333332 1
Q ss_pred CCeEEEEEecCCccCcCHHHHHHH--HHHHHHHHHHcCCccceEEeccccC-----CCccccc
Q psy3751 464 IKHIIIAVNKMDLINYNQIFYKRI--VYAYKKFAEDIHFQNINTIPISALN-----GDNIISA 519 (967)
Q Consensus 464 ~~~iivviNK~D~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~ii~iSa~~-----g~gi~~l 519 (967)
..++|++.||+|+.+.+.+.+-.. ...++.+++.++. .++++++.. +.|+.+|
T Consensus 139 ~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~---~~~~~~~~~~~~~~~~~v~~L 198 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG---RVCAFDNRATGREQEAQVEQL 198 (247)
T ss_dssp GGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT---CEEECCTTCCHHHHHHHHHHH
T ss_pred ccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC---eEEEEeCCCCccccHHHHHHH
Confidence 235899999999976543322111 1347778888775 445555443 5788774
No 191
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=146.78 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=91.1
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....++|+++|.+|+|||||+++|++.. +. .+..+ ..|.+.. ....+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~------------------------~~----~~~~~---t~~~~~~-~~~~~ 64 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKR------------------------FI----SEYDP---NLEDTYS-SEETV 64 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSS------------------------CC----SCCCT---TCCEEEE-EEEEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCC------------------------CC----cccCC---Cccceee-EEEEE
Confidence 34567999999999999999999999721 00 00000 0011110 01112
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH------cCCCeEEEEEec
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL------LRIKHIIIAVNK 473 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~------~~~~~iivviNK 473 (967)
......+.+|||||+++|.. +...++.+|++++|+|+++.. ........+..+.. .+++ +|+|+||
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~------s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK 136 (187)
T 3c5c_A 65 DHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQ------SFDSSSSYLELLALHAKETQRSIP-ALLLGNK 136 (187)
T ss_dssp TTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHH------HHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEC
T ss_pred CCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhhccCCCCC-EEEEEEC
Confidence 22235688999999987654 245678899999999998711 11112222222222 2445 9999999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccc-cCCCccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISA-LNGDNIISA 519 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa-~~g~gi~~l 519 (967)
+|+.+..+.. .++...+.+.+++ +++++|| ++|.|++++
T Consensus 137 ~Dl~~~~~v~----~~~~~~~~~~~~~---~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 137 LDMAQYRQVT----KAEGVALAGRFGC---LFFEVSACLDFEHVQHV 176 (187)
T ss_dssp GGGGGGCSSC----HHHHHHHHHHHTC---EEEECCSSSCSHHHHHH
T ss_pred cchhhcCccC----HHHHHHHHHHcCC---cEEEEeecCccccHHHH
Confidence 9997532211 1234445566665 8999999 899999985
No 192
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.53 E-value=5e-14 Score=143.81 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=94.1
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....++|+++|++|+|||||+++|++.. . . ....++ +.+.....+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~--~--------~--~~~~~t----------------------~~~~~~~~~ 61 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG--Y--------P--TEYIPT----------------------AFDNFSAVV 61 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------------------CC----------------------SSEEEEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC--C--------C--CCCCCc----------------------ccceeEEEE
Confidence 34567899999999999999999998621 0 0 000000 001111223
Q ss_pred ecCC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH-H-HHHHHHHH-cCCCeEEEEEecC
Q psy3751 400 NTPK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT-K-RHSIIAHL-LRIKHIIIAVNKM 474 (967)
Q Consensus 400 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t-~-~~~~~~~~-~~~~~iivviNK~ 474 (967)
..++ ..+.++||||+++|.......+..+|++|+|+|+++ ...-+. . ..+..+.. ..-.++++|+||+
T Consensus 62 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 134 (201)
T 2q3h_A 62 SVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS-------PSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134 (201)
T ss_dssp EETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHCSSSCEEEEEECG
T ss_pred EECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC-------HHHHHHHHHHHHHHHHHhCCCCCEEEEEECH
Confidence 3344 357799999999887666667889999999999987 211111 1 12222222 2233499999999
Q ss_pred CccCcCHHHHHH---------HHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKR---------IVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+.+.... ... ..++...+.+.++. .+++++||++|.|++++
T Consensus 135 Dl~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l 185 (201)
T 2q3h_A 135 DLREDVKV-LIELDKCKEKPVPEEAAKLLAEEIKA--ASYIECSALTQKNLKEV 185 (201)
T ss_dssp GGGGCHHH-HHHHHTTTCCCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHHH
T ss_pred hhhhchhh-hhhhcccccccCCHHHHHHHHHhcCC--cEEEEEecCCCCCHHHH
Confidence 99753211 000 12234445555553 37899999999999985
No 193
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.53 E-value=1.7e-14 Score=158.24 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=97.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
...+|+++|.+|+|||||+++|+...-.+ ......|++.....+..+
T Consensus 157 ~la~V~lvG~~nvGKSTLln~L~~~~~~i---------------------------------~~~~ftTl~p~~g~v~~~ 203 (342)
T 1lnz_A 157 VLADVGLVGFPSVGKSTLLSVVSSAKPKI---------------------------------ADYHFTTLVPNLGMVETD 203 (342)
T ss_dssp CCCCEEEESSTTSSHHHHHHHSEEECCEE---------------------------------SSTTSSCCCCCEEEEECS
T ss_pred hcCeeeeeCCCCCCHHHHHHHHHcCCCcc---------------------------------ccCCccccCceEEEEEeC
Confidence 34579999999999999999998621110 011233444444456666
Q ss_pred C-ceEEEeeChhhHH-------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc----CCCeEEEE
Q psy3751 403 K-RKFIIADTPGHEQ-------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL----RIKHIIIA 470 (967)
Q Consensus 403 ~-~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~----~~~~iivv 470 (967)
+ ..+.++||||+.+ +....++.+..+|++|+|||++..... ....+....+..+... .-.++++|
T Consensus 204 ~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~---~~~~~~~~~~~eL~~~~~~l~~~p~ilV 280 (342)
T 1lnz_A 204 DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR---DPYDDYLTINQELSEYNLRLTERPQIIV 280 (342)
T ss_dssp SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCC---CHHHHHHHHHHHHHHSCSSTTTSCBCBE
T ss_pred CCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccccc---ChHHHHHHHHHHHHHhhhhhcCCCEEEE
Confidence 5 7899999999643 445566667789999999999752100 2222333333334432 23458999
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+||+|+.+.. + .++.+.+.+.. ..+++++||++|.|++++
T Consensus 281 ~NK~Dl~~~~-e-------~~~~l~~~l~~-~~~v~~iSA~tg~gi~eL 320 (342)
T 1lnz_A 281 ANKMDMPEAA-E-------NLEAFKEKLTD-DYPVFPISAVTREGLREL 320 (342)
T ss_dssp EECTTSTTHH-H-------HHHHHHHHCCS-CCCBCCCSSCCSSTTHHH
T ss_pred EECccCCCCH-H-------HHHHHHHHhhc-CCCEEEEECCCCcCHHHH
Confidence 9999998531 1 22334444442 147899999999999985
No 194
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.53 E-value=6.7e-14 Score=140.69 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=96.0
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|++..-. . +....+..+. ...+..
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~-----------------------------~----~~~~t~~~~~-~~~~~~ 50 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-----------------------------E----NYVPTVFENY-TASFEI 50 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-----------------------------S----SCCCCSEEEE-EEEEEC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------C----CCCCccceeE-EEEEEE
Confidence 45689999999999999999999872110 0 0000011111 111222
Q ss_pred --CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-H-HHHHHHHHH-cCCCeEEEEEecCCc
Q psy3751 402 --PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-T-KRHSIIAHL-LRIKHIIIAVNKMDL 476 (967)
Q Consensus 402 --~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t-~~~~~~~~~-~~~~~iivviNK~D~ 476 (967)
....+.+|||||+++|.......+..+|++|+|+|+++ ...-+ . ...+..+.. ..-.++++|+||+|+
T Consensus 51 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 123 (184)
T 1m7b_A 51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR-------PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123 (184)
T ss_dssp SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC-------HHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchh
Confidence 33578899999999987766777899999999999987 21111 1 112222222 233459999999999
Q ss_pred cCcCHHHHHHH---------HHHHHHHHHHcCCccceEEecccc-CCCccccc
Q psy3751 477 INYNQIFYKRI---------VYAYKKFAEDIHFQNINTIPISAL-NGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~-~g~gi~~l 519 (967)
.+... ...++ .++...+.+.++. .+++++||+ +|.|++++
T Consensus 124 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~gi~~l 173 (184)
T 1m7b_A 124 RTDVS-TLVELSNHRQTPVSYDQGANMAKQIGA--ATYIECSALQSENSVRDI 173 (184)
T ss_dssp GGCHH-HHHHHHTTTCCCCCHHHHHHHHHHHTC--SEEEECBTTTBHHHHHHH
T ss_pred hcchh-hHhhhhhcccCCCCHHHHHHHHHHcCC--cEEEEeeecCCCcCHHHH
Confidence 75311 11111 1334555666552 489999999 68999984
No 195
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.53 E-value=6e-14 Score=143.66 Aligned_cols=155 Identities=17% Similarity=0.136 Sum_probs=96.4
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
.+..++|+++|.+|+|||||+++|++.. +. .+....+..+. ...+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~------------------------~~---------~~~~~t~~~~~-~~~~~ 70 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDC------------------------FP---------ENYVPTVFENY-TASFE 70 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSC------------------------CC---------SSCCCCSEEEE-EEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC------------------------CC---------CCcCCccceeE-EEEEE
Confidence 3467899999999999999999998721 10 00000111111 11222
Q ss_pred c--CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhH-HHHHHHHHH-cCCCeEEEEEecCC
Q psy3751 401 T--PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQT-KRHSIIAHL-LRIKHIIIAVNKMD 475 (967)
Q Consensus 401 ~--~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t-~~~~~~~~~-~~~~~iivviNK~D 475 (967)
. ....+.||||||+++|.......+..+|++|+|+|+++ ... ... ...+..+.. ..-.++|+|+||+|
T Consensus 71 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~-------~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 143 (205)
T 1gwn_A 71 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR-------PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143 (205)
T ss_dssp SSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred ECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHHCCCCCEEEEEechh
Confidence 2 33578999999999987766677889999999999987 111 111 122222222 23345999999999
Q ss_pred ccCcCHHHHHH---------HHHHHHHHHHHcCCccceEEecccc-CCCccccc
Q psy3751 476 LINYNQIFYKR---------IVYAYKKFAEDIHFQNINTIPISAL-NGDNIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~~ii~iSa~-~g~gi~~l 519 (967)
+.+... ...+ ..++.+.+.+.++. .+++++||+ +|.|++++
T Consensus 144 l~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~SAk~~~~gv~~l 194 (205)
T 1gwn_A 144 LRTDVS-TLVELSNHRQTPVSYDQGANMAKQIGA--ATYIECSALQSENSVRDI 194 (205)
T ss_dssp GGGCHH-HHHHHHTTTCCCCCHHHHHHHHHHHTC--SEEEECCTTTCHHHHHHH
T ss_pred hccchh-hhhhhcccccCCCCHHHHHHHHHHcCC--CEEEEeeeccCCcCHHHH
Confidence 975311 1111 11334555666552 388999999 68999985
No 196
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=156.38 Aligned_cols=160 Identities=14% Similarity=0.071 Sum_probs=96.2
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
..+..++|+++|.+|+|||||+++|++.. ... ... ..+.+.....+
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~----------~~~----------------------~t~~~~~~~~~ 71 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNA--FPG----------EYI----------------------PTVFDNYSANV 71 (204)
Confidence 34567899999999999999999998621 000 000 00001111112
Q ss_pred ec--CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc--CCCeEEEEEecCC
Q psy3751 400 NT--PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL--RIKHIIIAVNKMD 475 (967)
Q Consensus 400 ~~--~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~--~~~~iivviNK~D 475 (967)
.. ....+.+|||||+++|.......+..+|++|+|+|+++... +.......+..+... ++ ++++|+||+|
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s-----~~~~~~~~~~~l~~~~~~~-piilv~NK~D 145 (204)
T 3th5_A 72 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS-----FENVRAKWYPEVRHHCPNT-PIILVGTKLD 145 (204)
Confidence 22 23456799999999998888888899999999999987321 111001122222221 44 4899999999
Q ss_pred ccCcCHHH--H------HHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 476 LINYNQIF--Y------KRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 476 ~~~~~~~~--~------~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
+.+..... . ....++...+.+.++. .+++++||++|.|++++.+
T Consensus 146 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKTVFD 197 (204)
Confidence 97532100 0 0111223333434432 3789999999999998643
No 197
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.50 E-value=6.9e-14 Score=147.02 Aligned_cols=157 Identities=12% Similarity=0.178 Sum_probs=93.9
Q ss_pred cCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeee
Q psy3751 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYF 399 (967)
Q Consensus 320 ~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 399 (967)
.....++|+++|++|+|||||+|+|++..... ......++|.+.....+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~-------------------------------~~~~~~~~t~~~~~~~~ 73 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFH-------------------------------SGTAAKSITKKCEKRSS 73 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSC-------------------------------C-------CCSCEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCc-------------------------------cCCCCCceeeeEEEEEE
Confidence 44577999999999999999999999732110 00111245665555667
Q ss_pred ecCCceEEEeeChh-----------hHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcC---C
Q psy3751 400 NTPKRKFIIADTPG-----------HEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLR---I 464 (967)
Q Consensus 400 ~~~~~~~~liDtpG-----------~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~---~ 464 (967)
..++..+.+||||| .+.+...+......+|++|+|+|++. .. ....+.+..+ ..++ .
T Consensus 74 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-------~~-~~~~~~l~~~~~~~~~~~~ 145 (239)
T 3lxx_A 74 SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-------YT-EEEHKATEKILKMFGERAR 145 (239)
T ss_dssp EETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-------CS-SHHHHHHHHHHHHHHHHHG
T ss_pred EeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-------CC-HHHHHHHHHHHHHhhhhcc
Confidence 77888999999999 33455555566678899999999875 11 1222222222 1111 1
Q ss_pred CeEEEEEecCCccCcCH--HHHHHHHHHHHHHHHHcCCccceEEeccccCC-----Ccccc
Q psy3751 465 KHIIIAVNKMDLINYNQ--IFYKRIVYAYKKFAEDIHFQNINTIPISALNG-----DNIIS 518 (967)
Q Consensus 465 ~~iivviNK~D~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g-----~gi~~ 518 (967)
.++++|+||+|+.+... +......+.++.+++.++. .++++++..+ .++.+
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~v~~ 203 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD---RYCALNNKATGAEQEAQRAQ 203 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHHHHHHHSS---SEEECCTTCCHHHHHHHHHH
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC---EEEEEECCCCccccHHHHHH
Confidence 35999999999875321 1111122356777777775 4566666544 46665
No 198
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.49 E-value=6.2e-14 Score=140.01 Aligned_cols=145 Identities=18% Similarity=0.112 Sum_probs=87.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.+.+||+++|.+|+|||||+++|++.. +. ..... .|... ...+..
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~------------------------~~--~~~~t------~~~~~---~~~~~~ 49 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGS------------------------YQ--VLEKT------ESEQY---KKEMLV 49 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSC------------------------CC--CCSSC------SSSEE---EEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC------------------------CC--CcCCC------cceeE---EEEEEE
Confidence 356899999999999999999998721 10 00000 01110 112233
Q ss_pred CC--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhh-HHHHHHHHHHc-----CCCeEEEEEec
Q psy3751 402 PK--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQ-TKRHSIIAHLL-----RIKHIIIAVNK 473 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~-t~~~~~~~~~~-----~~~~iivviNK 473 (967)
++ ..+.+|||||++++ ..++.+|++|+|+|+++ ...-+ ....+..+... .-.++++|.||
T Consensus 50 ~~~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (178)
T 2iwr_A 50 DGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLED-------ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117 (178)
T ss_dssp TTEEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred CCEEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcC-------HHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 33 46789999998762 34567999999999987 21111 11211112221 12459999999
Q ss_pred CCccC--cCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 474 MDLIN--YNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 474 ~D~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|+.+ ..... .++.+.+.+..+ ..+++++||++|.|++++
T Consensus 118 ~Dl~~~~~~~v~----~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l 159 (178)
T 2iwr_A 118 DRISASSPRVVG----DARARALXADMK--RCSYYETXATYGLNVDRV 159 (178)
T ss_dssp TTCBTTBCCCSC----HHHHHHHHHHHS--SEEEEEEBTTTTBTHHHH
T ss_pred ccccccccCcCC----HHHHHHHHHhhc--CCeEEEEeccccCCHHHH
Confidence 99842 11111 122333444442 248999999999999985
No 199
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.48 E-value=1.4e-13 Score=161.22 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=101.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|++.. +. . ...|++..+..+..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~------------------------~~-----~-------~~~T~~~~~~~~~~ 363 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQ------------------------SV-----T-------TIPTVGFNVETVTY 363 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSS------------------------CC-----C-------CCCCSSEEEEEEES
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCC------------------------CC-----C-------cCCccceeEEEEEe
Confidence 457899999999999999999998721 10 0 01144444555777
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH--cCCCeEEEEEecCCccCc
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL--LRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~--~~~~~iivviNK~D~~~~ 479 (967)
++..+.|+||||+++|...+...+..+|++|+|+|+++.. .+.........+... ..-.++|+|+||+|+.+.
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~-----s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD-----RIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGG-----GHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchh-----HHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 7889999999999999888888889999999999998721 121211122222221 122459999999999764
Q ss_pred CHHHHHHHHHHHHHHHHH--cCCccceEEeccccCCCccccc
Q psy3751 480 NQIFYKRIVYAYKKFAED--IHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~--~~~~~~~ii~iSa~~g~gi~~l 519 (967)
... .++. ..+.. ......+++++||++|.|++++
T Consensus 439 ~~~--~~~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 474 (497)
T 3lvq_E 439 MKP--HEIQ----EKLGLTRIRDRNWYVQPSCATSGDGLYEG 474 (497)
T ss_dssp CCH--HHHH----HHTTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred CCH--HHHH----HHhchhhhhcCCeEEEEEECCCCCCHHHH
Confidence 221 1121 11111 1112457999999999999984
No 200
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=8.7e-14 Score=144.04 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=85.4
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeee
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 400 (967)
....++|+++|++|+|||||+++|++..-.. .......+++. .
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~------------------------------~~~~~~~~~~~-------~ 51 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP------------------------------TVVSQEPLSAA-------D 51 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCC------------------------------BCCCSSCEEET-------T
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC------------------------------eeeecCceEEE-------E
Confidence 4567899999999999999999998722100 00000111111 1
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhccc----CCEEEEEEeCC-CCCCCCCCCchhhHHHHHHHHHH------cCCCeEEE
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGAST----ADAVIILIDAS-KIKFNPSVNLLTQTKRHSIIAHL------LRIKHIII 469 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~----aD~~ilVvda~-~~~~~~~~g~~~~t~~~~~~~~~------~~~~~iiv 469 (967)
.....+.++||||+++|...+...+.. +|++|+|+|++ ... .+.........+... .++| +++
T Consensus 52 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p-~il 125 (218)
T 1nrj_B 52 YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK-----KLTTTAEFLVDILSITESSCENGID-ILI 125 (218)
T ss_dssp GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTT-----CCHHHHHHHHHHHHHHHHHSTTCCC-EEE
T ss_pred eeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChH-----HHHHHHHHHHHHHhcccccccCCCC-EEE
Confidence 145679999999999887666666655 89999999998 310 222222222222221 2444 999
Q ss_pred EEecCCccCcCH--HHHHHHHHHHHHHHHHcCCccceEEeccccCCCcc
Q psy3751 470 AVNKMDLINYNQ--IFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516 (967)
Q Consensus 470 viNK~D~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi 516 (967)
|+||+|+.+... ...+.+.+++..+....+ .+++++||++|.+-
T Consensus 126 v~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 126 ACNKSELFTARPPSKIKDALESEIQKVIERRK---KSLNEVERKINEED 171 (218)
T ss_dssp EEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH---HHHHC---------
T ss_pred EEEchHhcccCCHHHHHHHHHHHHHHHHHHHh---cccccccccccccc
Confidence 999999986542 222333444455544443 37899999999874
No 201
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.48 E-value=1e-14 Score=148.22 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=105.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhccc---ccC
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTV---RLR 114 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~---~~~ 114 (967)
++++|++|||+||+++++++.+. +.++.++|+|+|... ..++++++|+++|++++++..+..++.... ...
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~----g~~v~~~~v~~~~~~--~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKL----GYNPHLITINFGVIP--SYKLAEETAKILGFKHKVITLDRKIVEKAADMIIEH 80 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHT----TEEEEEEEEECSSSC--TTHHHHHHHHHHTCEEEEEECCTHHHHHHHHHHHHH
T ss_pred CeEEEEEECcHHHHHHHHHHHHc----CCCeEEEEEeCCCch--HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHhc
Confidence 57899999999999999999875 567899999999865 568999999999999999988765432110 011
Q ss_pred CCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEe
Q psy3751 115 KPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVF 194 (967)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~ 194 (967)
..++..|..|++..+.+.++ |++++++||++||..++..+.-+..-.. ..+...++
T Consensus 81 ~~~~~~c~~~~~~~l~~~A~--g~~~i~tGh~~dD~~et~~~~gl~~~~~----------------------~~~~~iir 136 (203)
T 3k32_A 81 KYPGPAIQYVHKTVLEILAD--EYSILADGTRRDDRVPKLSYSEIQSLEM----------------------RKNIQYIT 136 (203)
T ss_dssp SSSHHHHHHHHHHHHHHHTT--TCSEEECCCCTTCCSSCCCHHHHHHHHH----------------------HHTCEEEC
T ss_pred CCCccHHHHHHHHHHHHHhc--CCCEEEECCCcccchhhcchhhccCccc----------------------ccCCeEEe
Confidence 22445677777765555544 8999999999998875432210000000 00135689
Q ss_pred eCCCCcHHHHHHHHHHcCCC
Q psy3751 195 PISNWTELDIWQYIEREKII 214 (967)
Q Consensus 195 Pl~~wt~~dV~~yi~~~~lp 214 (967)
||+.|+++||++|++++ ++
T Consensus 137 PLl~~~k~eI~~~a~~~-l~ 155 (203)
T 3k32_A 137 PLMGFGYKTLRHLASEF-FI 155 (203)
T ss_dssp GGGGCCHHHHHHHHHHH-EE
T ss_pred ccCCCCHHHHHHHHHHh-CC
Confidence 99999999999999988 54
No 202
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.47 E-value=1.3e-13 Score=138.49 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=91.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec--
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT-- 401 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-- 401 (967)
.++|+++|.+|+|||||+++|++...... .+....++++.....+..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~-------------------------------~~~~~t~g~~~~~~~~~~~~ 50 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDL-------------------------------GMQSATVGIDVKDWPIQIRD 50 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC------------------------------------------CSEEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccC-------------------------------CCcceeccEEeEEeeecccc
Confidence 36899999999999999999986211100 000011122222222211
Q ss_pred ---CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCc--hhhHHHHHHHHHH-cCCCeEEEEEecCC
Q psy3751 402 ---PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL--LTQTKRHSIIAHL-LRIKHIIIAVNKMD 475 (967)
Q Consensus 402 ---~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~--~~~t~~~~~~~~~-~~~~~iivviNK~D 475 (967)
....+.++||||+++|.......++.+|++++|+|.++ +. .......+..+.. ..-.++|+|.||+|
T Consensus 51 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~~s~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 51 KRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK-------GQAEVDAMKPWLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp -----CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG-------CHHHHHTHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred CCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc-------chhHHHHHHHHHHHHHhhCCCCcEEEEEECCC
Confidence 34578999999998887655555678999999999987 21 1122233322222 22345899999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCc-cceEEeccccCCC-ccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQ-NINTIPISALNGD-NIISA 519 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~ii~iSa~~g~-gi~~l 519 (967)
+.+.... -.......+.+.+.+++. ..+++++||++|. |+.++
T Consensus 124 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l 168 (184)
T 2zej_A 124 VSDEKQR-KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKL 168 (184)
T ss_dssp GCCHHHH-HHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHH
T ss_pred cccchhh-HHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHH
Confidence 9753211 111122233444445552 1248999999997 88874
No 203
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=3.2e-13 Score=138.42 Aligned_cols=152 Identities=18% Similarity=0.111 Sum_probs=90.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|++....+... . ..++.+.....+..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-------------------------------~-~~~g~d~~~~~i~~ 82 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-------------------------------C-EVLGEDTYERTLMV 82 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----------------------------------CCTTEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-------------------------------C-CccceeeEEEEEEE
Confidence 456899999999999999999998632221000 0 00111111122333
Q ss_pred CC--ceEEEeeChhhHHH-HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecC
Q psy3751 402 PK--RKFIIADTPGHEQY-TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKM 474 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~-~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~ 474 (967)
++ ..+.++||+|.+.. ........+.+|++|+|+|.++.. .+ ....+.+..+.. .++| +|+|.||+
T Consensus 83 ~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~-----sf-~~~~~~~~~l~~~~~~~~~p-iilVgNK~ 155 (211)
T 2g3y_A 83 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA-----SF-EKASELRIQLRRARQTEDIP-IILVGNKS 155 (211)
T ss_dssp TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHH-----HH-HHHHHHHHHHHTSGGGTTSC-EEEEEECT
T ss_pred CCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHHhCCCCCc-EEEEEECh
Confidence 34 35678999997763 222233457799999999998710 01 111222222222 2444 99999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+.+..+... ++.+.+...+++ +++++||++|.|++++
T Consensus 156 DL~~~r~v~~----~e~~~~a~~~~~---~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 156 DLVRCREVSV----SEGRACAVVFDC---KFIETSAAVQHNVKEL 193 (211)
T ss_dssp TCGGGCCSCH----HHHHHHHHHHTC---EEEECBTTTTBSHHHH
T ss_pred HHhcCceEeH----HHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 9975322111 122233444554 8999999999999985
No 204
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.45 E-value=2.7e-13 Score=140.36 Aligned_cols=157 Identities=11% Similarity=0.034 Sum_probs=101.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhh--------hc
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIM--------KG 109 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~--------~~ 109 (967)
++++|++|||+||+++++++.+. +.++.++|+|++....+..++++++++++|++++++..+.... ..
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~l~~~~ 79 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLAPNALTRND 79 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGSTGGGC---
T ss_pred CCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhccccccccc
Confidence 57889999999999999999987 3478999999997655678999999999999999987764111 01
Q ss_pred ccc-----cCCCCcccchhhcH-HHHHHHHHHcCCcEEEEeccchhhHhhhcc--ccccccccCCCCCCCCCCccccccc
Q psy3751 110 TVR-----LRKPNTDSRNAAQS-ITLLETIKEFKFDACIGGARRDEEKARAKE--RIFSFRDKFGQWNPKSQRPELWNLY 181 (967)
Q Consensus 110 ~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~R~des~~R~~~--~~~~~~~~~~~~~~~~~~p~~~~~~ 181 (967)
... ..+..+..|...+. ..+.+.++++|.+++++||+.||....... ..+..-. ...
T Consensus 80 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~~~~~~~~~~~l~---------------~~~ 144 (219)
T 3bl5_A 80 IEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCN---------------VTV 144 (219)
T ss_dssp -----------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCGGGSHHHHHHHH---------------HHH
T ss_pred ccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCCCCCCCHHHHHHHH---------------HHH
Confidence 100 01112223333344 344678888999999999999986431000 0000000 000
Q ss_pred cccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 182 NTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 182 ~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
... .......++||++|++.||+.|++++|+|
T Consensus 145 ~~~-~~~~~~ii~PL~~~~K~ei~~~a~~~glp 176 (219)
T 3bl5_A 145 NLA-MEKPFVIHTPLMWLNKAETWKLADELGAL 176 (219)
T ss_dssp HHH-HTSCCEEECTTTTCCHHHHHHHHHHTTCH
T ss_pred Hhc-cCCCeEEEeccccCCHHHHHHHHHHcCCC
Confidence 000 00123578999999999999999999994
No 205
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.45 E-value=4.4e-13 Score=149.44 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=94.7
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+|+|++.... .....+.|.+.....+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~---------------------------------~~~~~~~t~~~~~~~~~~ 211 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE---------------------------------IASYPFTTRGINVGQFED 211 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE---------------------------------EECCTTCSSCEEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc---------------------------------cCCCCCeeeceeEEEEEe
Confidence 45679999999999999999999872210 001123343444444555
Q ss_pred CCceEEEeeChhhHHH--------HHHHH-hhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHc-CCCeEEEE
Q psy3751 402 PKRKFIIADTPGHEQY--------TRNMI-TGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLL-RIKHIIIA 470 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~--------~~~~~-~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~-~~~~iivv 470 (967)
++..+.++||||+.++ ..... .....+|.+++|+|++... +.....+ .+.+..+ ... +.+ +|+|
T Consensus 212 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~~~~-~~~~~~i~~~~~~~p-iilV 286 (357)
T 2e87_A 212 GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPLEEQ-IHLFEEVHGEFKDLP-FLVV 286 (357)
T ss_dssp TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCHHHH-HHHHHHHHHHTTTSC-EEEE
T ss_pred cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCHHHH-HHHHHHHHHhcCCCC-EEEE
Confidence 6778999999996432 12222 2335699999999987621 0112222 2222222 223 444 9999
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+||+|+.+.. .. ++...+++..+. +++++||++|+|++++.
T Consensus 287 ~NK~Dl~~~~--~~----~~~~~~~~~~~~---~~~~iSA~~g~gi~~l~ 327 (357)
T 2e87_A 287 INKIDVADEE--NI----KRLEKFVKEKGL---NPIKISALKGTGIDLVK 327 (357)
T ss_dssp ECCTTTCCHH--HH----HHHHHHHHHTTC---CCEECBTTTTBTHHHHH
T ss_pred EECcccCChH--HH----HHHHHHHHhcCC---CeEEEeCCCCcCHHHHH
Confidence 9999998532 12 223334444443 78999999999999854
No 206
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.44 E-value=1.7e-13 Score=149.38 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=67.0
Q ss_pred CceEEEeeChhhH-------------HHHHHHHhhcccCCEEE-EEEeCCCCCCCCCCCchhhHH-HHHHHHHHcCCCeE
Q psy3751 403 KRKFIIADTPGHE-------------QYTRNMITGASTADAVI-ILIDASKIKFNPSVNLLTQTK-RHSIIAHLLRIKHI 467 (967)
Q Consensus 403 ~~~~~liDtpG~~-------------~~~~~~~~~~~~aD~~i-lVvda~~~~~~~~~g~~~~t~-~~~~~~~~~~~~~i 467 (967)
...++||||||+. .+...+...+..+|.++ +|+|++. +...+.. ..+..+...+.+ +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-------~~~~~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-------DLANSDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS-------CGGGCHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc-------chhhhHHHHHHHHhCCCCCe-E
Confidence 4689999999952 34455566677888776 6899987 5555543 334444444555 9
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+|+||+|+.+.... ..+.++..+..+.....+++++||++|.|++++.
T Consensus 196 i~V~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~ 244 (299)
T 2aka_B 196 IGVITKLDLMDEGTD----ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 244 (299)
T ss_dssp EEEEECGGGSCTTCC----CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHH
T ss_pred EEEEEccccCCCCch----HHHHHhCCcCcCCCCcEEEECCChhhccccccHH
Confidence 999999999864321 1111111111111122478999999999999854
No 207
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.44 E-value=3.7e-13 Score=149.04 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=98.0
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|+...-. . ...+.+.+.....+..
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~-----------------------------~-----~~~~t~~~~~~~~~~~ 198 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFP-----------------------------G-----EYIPTVFDNYSANVMV 198 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCC-----------------------------C-----SCCCCSEEEEEEEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCC-----------------------------c-----ccCCcccceeEEEEEE
Confidence 45689999999999999999999862110 0 0011111222222334
Q ss_pred CCc--eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHH--HHHHHHHHc-CCCeEEEEEecCCc
Q psy3751 402 PKR--KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK--RHSIIAHLL-RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~~--~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~--~~~~~~~~~-~~~~iivviNK~D~ 476 (967)
++. .+.++||||+++|.......+..+|++++|+|+++ ....+.. ..+..+... ...++++|+||+|+
T Consensus 199 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS-------PASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC-------HHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHH
T ss_pred CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhc
Confidence 444 45599999999998777778899999999999987 2211111 122223322 23449999999999
Q ss_pred cCcCHHHHHHH---------HHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRI---------VYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i---------~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+... ..+.. .++...+.+..+. .+++++||++|.|++++
T Consensus 272 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l 320 (332)
T 2wkq_A 272 RDDKD-TIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKTV 320 (332)
T ss_dssp HTCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHH
T ss_pred ccccc-hhhhccccccccccHHHHHHHHHHcCC--cEEEEecCCCCcCHHHH
Confidence 75321 11111 2234445555553 37899999999999984
No 208
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=99.43 E-value=3.5e-13 Score=122.41 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=89.4
Q ss_pred cCchHHHHHHHhcCCccccCceeeEEEeecccccccccccccCCCCCcEEEEeccccHHHHHHHHHhcCCCCCCcEEEEE
Q psy3751 848 PGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVE 927 (967)
Q Consensus 848 PGiss~~aa~a~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~ 927 (967)
||+||+.+|.+.+|+|.+ ++.+.+++ +........|..+...+.|+||||+++++.++++.|.+. +++++|+++++
T Consensus 1 PG~sA~~~Al~~sGlp~~-~F~F~Gfl--p~~~~r~~~l~~la~~~~TlVfyesp~Rl~~~l~~L~~~-~g~~~~v~v~r 76 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNE-KFCFEGFL--PQKKGRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEY-FGPERQVSVSR 76 (115)
T ss_dssp -CTTTHHHHHHHTTSCCS-SEEEEESC--CSSTTHHHHHHHTTTCCSEEEEEECTTTHHHHHHHHHHH-HCTTCEEEEEE
T ss_pred CchhHHHHHHHHcCCCCC-cEEEEeeC--CCCccHHHHHHHHhCCCCeEEEEechHHHHHHHHHHHHh-cCCCCEEEeee
Confidence 899999999999999964 33222222 211112245777777889999999999999999999987 88899999999
Q ss_pred ecCCCCeEEEEEehhhHHHhh--ccCCCcEEEEEcCC
Q psy3751 928 NCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKS 962 (967)
Q Consensus 928 ~l~~~~E~i~~~~l~~l~~~~--~~~~~~~vi~vg~~ 962 (967)
++|+++|++++||++++.+.. ...+++.||||+..
T Consensus 77 elTk~~E~~~rgtl~el~~~~~~~~~kGe~vivv~~~ 113 (115)
T 3ffy_A 77 EISKIHEETVRGTLSELIEHFTATDPRGEIVIVLAGI 113 (115)
T ss_dssp ESSSSCEEEEEEEHHHHHHHHHHSCCCSSEEEEECCC
T ss_pred ccCCCceEEEEeeHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 999999999999999999764 35799999999753
No 209
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.43 E-value=1.9e-13 Score=146.41 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=76.5
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+|+|++..... .....+.|.+.....+..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~--------------------------------~~~~~~~t~~~~~~~~~~ 84 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS--------------------------------ISPFQSEGPRPVMVSRSR 84 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC--------------------------------CCSSSCCCSSCEEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc--------------------------------ccCCCCcceeeEEEEEee
Confidence 356899999999999999999999732110 001123333333344566
Q ss_pred CCceEEEeeChhhHHH-------HHHHHhh--cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH-HcCC---CeEE
Q psy3751 402 PKRKFIIADTPGHEQY-------TRNMITG--ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH-LLRI---KHII 468 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~-------~~~~~~~--~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~-~~~~---~~ii 468 (967)
++..+++|||||+.++ ...+... ...+|++|+|+|.+.. .......+.+..+. ..+. .++|
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~------~~~~~~~~~~~~l~~~~~~~~~~~ii 158 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY------RVDNLDKLVAKAITDSFGKGIWNKAI 158 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC------CCCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC------cCCHHHHHHHHHHHHHhCcccccCEE
Confidence 7788999999997543 2222222 2479999999988652 22233334444333 3343 3599
Q ss_pred EEEecCCccCc
Q psy3751 469 IAVNKMDLINY 479 (967)
Q Consensus 469 vviNK~D~~~~ 479 (967)
+|+||+|+.+.
T Consensus 159 vV~nK~Dl~~~ 169 (270)
T 1h65_A 159 VALTHAQFSPP 169 (270)
T ss_dssp EEEECCSCCCG
T ss_pred EEEECcccCCc
Confidence 99999999754
No 210
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.43 E-value=2e-13 Score=151.49 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=113.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCC--------ChhhHHHHHHHHHHhCCcEEEEecchhhhhc
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHN--------FPEVISFRDNCISKLGETLIVRSVEDSIMKG 109 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~--------~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~ 109 (967)
++++|++|||+||+|+++++.+. +.++.++|++++.+ .++..+.++++|+++|+|++++.....++..
T Consensus 10 ~kVlVa~SGGvDSsv~a~lL~~~----G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~~~~ 85 (376)
T 2hma_A 10 TRVVVGMSGGVDSSVTALLLKEQ----GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYWDR 85 (376)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHH
T ss_pred CeEEEEEeCHHHHHHHHHHHHHc----CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHHHHH
Confidence 67999999999999999999987 66899999999864 2457889999999999999999887655432
Q ss_pred cc-------c--cCCCCcccchh-hcHHHHHHHHHHcCCcEEEEeccchhhH-hhhccccccccccCCCCCCCCCCcccc
Q psy3751 110 TV-------R--LRKPNTDSRNA-AQSITLLETIKEFKFDACIGGARRDEEK-ARAKERIFSFRDKFGQWNPKSQRPELW 178 (967)
Q Consensus 110 ~~-------~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~R~des~-~R~~~~~~~~~~~~~~~~~~~~~p~~~ 178 (967)
.. . ..+.+|..|.. +|...+.+.+++.|.+.++|||+.++.. ....+.++....... .+...++
T Consensus 86 v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~k-----dqsyfL~ 160 (376)
T 2hma_A 86 VFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGK-----DQTYFLS 160 (376)
T ss_dssp THHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTT-----CCGGGGT
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhCCCchhhhhhcccccc-----ccchhcc
Confidence 11 1 11223334433 3566788899999999999999999864 222222332211100 0000000
Q ss_pred ccccccCCC-CCceEEeeCCCCcHHHHHHHHHHcCCCC
Q psy3751 179 NLYNTRVHP-GENIRVFPISNWTELDIWQYIEREKIIL 215 (967)
Q Consensus 179 ~~~~~~~~~-~~~~~i~Pl~~wt~~dV~~yi~~~~lp~ 215 (967)
. ... .....++||.+|+++||++|++++|+|+
T Consensus 161 ~-----l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~ 193 (376)
T 2hma_A 161 Q-----LSQEQLQKTMFPLGHLEKPEVRRLAEEAGLST 193 (376)
T ss_dssp T-----CCHHHHTTEECTTTTCCHHHHHHHHHHTTCTT
T ss_pred C-----CChhhcCcEEecCcCCCHHHHHHHHHHcCCCc
Confidence 0 000 0135789999999999999999999985
No 211
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.42 E-value=2.1e-13 Score=158.48 Aligned_cols=182 Identities=17% Similarity=0.132 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHH-HHHHHHHhCCcE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISF-RDNCISKLGETL 97 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~-~~~~~~~~gi~i 97 (967)
++..+++.++.+++.+.. +++++++|||+||+|+++++.+++ +.++.++|+|+|...++..+. ++.+|+++|+++
T Consensus 213 ~~~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~---G~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~ 288 (527)
T 3tqi_A 213 TKHIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAI---GDQLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKV 288 (527)
T ss_dssp SHHHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHH---GGGEEEEEECCSCSCTTHHHHHHHHHTTSSCCEE
T ss_pred HHHHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHh---CCeEEEEEeccCCCChhHHHHHHHHHHHHcCCcE
Confidence 345566777778777765 889999999999999999999874 347999999999876544444 455999999999
Q ss_pred EEEecchhhhhcccccCCCCcccc---hhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhcccccc---ccccCCCCCCC
Q psy3751 98 IVRSVEDSIMKGTVRLRKPNTDSR---NAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFS---FRDKFGQWNPK 171 (967)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~---~~~~~~~~~~~ 171 (967)
+++.....+........ .+...| ++.+...+.+.+++.|.+.+++||+.+|..+...++.-. .....+..
T Consensus 289 ~vv~~~~~~~~~l~g~~-~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~--- 364 (527)
T 3tqi_A 289 ICVDAKDRFMKALKGIS-DPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHNVG--- 364 (527)
T ss_dssp EEECCHHHHHSSSSSCC-CHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHHCC---------------------
T ss_pred EEEeChHHHHHhhcCCC-ChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccccccccCCChhheeeeecccc---
Confidence 99988776654332221 112223 333444566677778999999999999987654332100 00000000
Q ss_pred CCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 172 SQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 172 ~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
..| .......++||.+|+++||++|.+++|+|+.-.+
T Consensus 365 -gl~----------~~~~~~iirPL~~l~K~EIr~~a~~lGlp~~~v~ 401 (527)
T 3tqi_A 365 -GLP----------LNMELKLIEPLRELFKDEVRKLGLELGLPADLIY 401 (527)
T ss_dssp -------------------CEECTTTTCCHHHHHHHHHHHTCCHHHHT
T ss_pred -cCc----------ccccCccccchhcCCHHHHHHHHHHcCCChhhhc
Confidence 000 0112347899999999999999999999986555
No 212
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.41 E-value=2e-13 Score=160.82 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=92.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeec------
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVA------ 395 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~------ 395 (967)
...+||+++|.+|+|||||+++|++..-. .....+ .|.++...
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~------------~~~~~t-------------------~g~~~~~~~~~~~~ 87 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD------------PKESQT-------------------HGLNVVTKQAPNIK 87 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------------------------------------CCCEEEEEGGGSG
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC------------CCCCCc-------------------cceEEEEecccccc
Confidence 46689999999999999999999972100 000000 11111110
Q ss_pred eeee--ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcC-CCeEEEEEe
Q psy3751 396 YRYF--NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLR-IKHIIIAVN 472 (967)
Q Consensus 396 ~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~-~~~iivviN 472 (967)
...+ ...+..+.++||||++.|.......++.+|++|+|+|++. . ......+..+...+ -.++|+|+|
T Consensus 88 ~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~-------~--~~~~~~~~~l~~~~~~~pvilV~N 158 (535)
T 3dpu_A 88 GLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT-------D--SNKHYWLRHIEKYGGKSPVIVVMN 158 (535)
T ss_dssp GGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG-------G--GGHHHHHHHHHHHSSSCCEEEEEC
T ss_pred ceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC-------c--hhHHHHHHHHHHhCCCCCEEEEEE
Confidence 0011 1225789999999988876655556778999999999976 2 23344444444443 234899999
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+.+..+.. .+.++.++...+. +++++||++|.|++++
T Consensus 159 K~Dl~~~~~v~----~~~~~~~~~~~~~---~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 159 KIDENPSYNIE----QKKINERFPAIEN---RFHRISCKNGDGVESI 198 (535)
T ss_dssp CTTTCTTCCCC----HHHHHHHCGGGTT---CEEECCC-----CTTH
T ss_pred CCCcccccccC----HHHHHHHHHhcCC---ceEEEecCcccCHHHH
Confidence 99997643211 2334455555554 7999999999999985
No 213
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.40 E-value=2.6e-13 Score=150.32 Aligned_cols=167 Identities=15% Similarity=0.119 Sum_probs=114.6
Q ss_pred HcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC--------hhhHHHHHHHHHHhCCcEEEEecchhh
Q psy3751 35 AECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF--------PEVISFRDNCISKLGETLIVRSVEDSI 106 (967)
Q Consensus 35 ~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~--------pet~~~~~~~~~~~gi~i~~~~~~~~~ 106 (967)
...++++|++|||+||+|+++++.+. +.++.++|+|++.+. ++..+.++++|+++|+|++++.....+
T Consensus 15 ~~~~kVvVa~SGGvDSsv~a~lL~~~----G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f 90 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLLQQQ----GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEY 90 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHHHTT----CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECHHHH
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHc----CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 34478999999999999999999987 668999999987642 356789999999999999999887655
Q ss_pred hhccc---------ccCCCCcccchh-hcHHHHHHHHHH-cCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCc
Q psy3751 107 MKGTV---------RLRKPNTDSRNA-AQSITLLETIKE-FKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRP 175 (967)
Q Consensus 107 ~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p 175 (967)
++... ...+.+|..|.. +|...+.+.+.+ .|.+.++|||..++......+.++....... .+..
T Consensus 91 ~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~k-----dqsy 165 (380)
T 2der_A 91 WDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNK-----DQSY 165 (380)
T ss_dssp HHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTT-----CCGG
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccccccchHHHhccccccc-----ccce
Confidence 42211 112233444544 356678888888 9999999999999764333333333221110 0000
Q ss_pred cccccccccCCC-CCceEEeeCCCCcHHHHHHHHHHcCCCC
Q psy3751 176 ELWNLYNTRVHP-GENIRVFPISNWTELDIWQYIEREKIIL 215 (967)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~i~Pl~~wt~~dV~~yi~~~~lp~ 215 (967)
.++. ... .....++||.+|+++||++|++++|+|+
T Consensus 166 ~L~~-----l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~ 201 (380)
T 2der_A 166 FLYT-----LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVT 201 (380)
T ss_dssp GGSS-----CCHHHHHHEECCGGGSCHHHHHHHHHHTTCC-
T ss_pred eecC-----CChhhcceeEccCCCCCHHHHHHHHHHcCCCC
Confidence 0100 000 1135799999999999999999999984
No 214
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.40 E-value=7.7e-13 Score=133.88 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=86.6
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|.+|+|||||+++|++....+... . ..++.+.....+..+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-------------------------------~-~~~~~~~~~~~~~~~ 52 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-------------------------------X-EVLGEDTYERTLMVD 52 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC------------------------------------GGGCTTEEEEEEEET
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-------------------------------c-cccceeEEEEEEEEC
Confidence 46899999999999999999998632221100 0 011111111223334
Q ss_pred Cc--eEEEeeChhhHHHHHH-HHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH----cCCCeEEEEEecCC
Q psy3751 403 KR--KFIIADTPGHEQYTRN-MITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL----LRIKHIIIAVNKMD 475 (967)
Q Consensus 403 ~~--~~~liDtpG~~~~~~~-~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~----~~~~~iivviNK~D 475 (967)
+. .+.++||+|.+..... .....+.+|++++|+|.++.. .+ ....+.+..+.. .+++ +|+|.||+|
T Consensus 53 ~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~-----s~-~~~~~~~~~l~~~~~~~~~p-iilV~NK~D 125 (192)
T 2cjw_A 53 GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA-----SF-EKASELRIQLRRARQTEDIP-IILVGNKSD 125 (192)
T ss_dssp TEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHH-----HH-HHHHHHHHHHHHHTTTSCCC-EEEEEECTT
T ss_pred CeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHH-----HH-HHHHHHHHHHHHhhCCCCCe-EEEEEechh
Confidence 43 5678999996552111 122346799999999998711 11 111222222222 2444 999999999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+........ ++.+.+....+. +++++||++|.|++++.
T Consensus 126 l~~~r~v~~----~~~~~~a~~~~~---~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 126 LVRXREVSV----SEGRAXAVVFDX---KFIETSAAVQHNVKELF 163 (192)
T ss_dssp CGGGCCSCH----HHHHHHHHHTTC---EEEECBTTTTBSHHHHH
T ss_pred hhccccccH----HHHHHHHHHhCC---ceEEeccccCCCHHHHH
Confidence 875322111 112233344443 88999999999999853
No 215
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.39 E-value=3.9e-13 Score=143.21 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=77.5
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.+.++|+++|++|+|||||+|+|++..... .....+.|.+.....+..
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~--------------------------------~~~~~~~t~~~~~~~~~~ 81 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR--------------------------------VSPFQAEGLRPVMVSRTM 81 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC--------------------------------CCSSCC-CCCCEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc--------------------------------cCCCCCcceeeEEEEEEE
Confidence 357899999999999999999999732211 011234455555556677
Q ss_pred CCceEEEeeChhhHHH-------HHHHHhhc--ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cC---CCeEE
Q psy3751 402 PKRKFIIADTPGHEQY-------TRNMITGA--STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LR---IKHII 468 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~-------~~~~~~~~--~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~---~~~ii 468 (967)
++..++||||||+.+| .+.+...+ ..+|++++|+|.+.. .......+.+..+.. .+ ..+++
T Consensus 82 ~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~------~~~~~~~~~~~~l~~~~~~~~~~~~i 155 (262)
T 3def_A 82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY------AVDELDKQVVIAITQTFGKEIWCKTL 155 (262)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCS------CCCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCC------CCCHHHHHHHHHHHHHhchhhhcCEE
Confidence 8889999999998654 22222222 378999999988762 222223333333332 23 23689
Q ss_pred EEEecCCccCc
Q psy3751 469 IAVNKMDLINY 479 (967)
Q Consensus 469 vviNK~D~~~~ 479 (967)
+|+||+|+.+.
T Consensus 156 vv~nK~Dl~~~ 166 (262)
T 3def_A 156 LVLTHAQFSPP 166 (262)
T ss_dssp EEEECTTCCCS
T ss_pred EEEeCcccCCC
Confidence 99999999643
No 216
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.38 E-value=4.4e-12 Score=130.26 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=92.6
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.+..+|+++|++|+|||||+++|++.... ... ....|.|..... +..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~---------~~~----------------------~~~~G~~~~~~~--~~~ 70 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSL---------ART----------------------SKTPGRTQLINL--FEV 70 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC--------------------------------------------CCEEE--EEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc---------ccc----------------------cCCCccceeeEE--EEe
Confidence 45578999999999999999999862100 000 011233332222 222
Q ss_pred CCceEEEeeChhhH----------HHHH---HHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEE
Q psy3751 402 PKRKFIIADTPGHE----------QYTR---NMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHII 468 (967)
Q Consensus 402 ~~~~~~liDtpG~~----------~~~~---~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~ii 468 (967)
++ .+.++||||+. .+.. ........+|.+++++|+.. +......+....+...+++ ++
T Consensus 71 ~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-------~~~~~~~~~~~~~~~~~~~-~~ 141 (210)
T 1pui_A 71 AD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH-------PLKDLDQQMIEWAVDSNIA-VL 141 (210)
T ss_dssp ET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-------CCCHHHHHHHHHHHHTTCC-EE
T ss_pred cC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC-------CCchhHHHHHHHHHHcCCC-eE
Confidence 23 68899999973 2222 22233357899999999987 3333333444445566777 77
Q ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 469 IAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 469 vviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+|.||+|+.+..+ .......+..++.+.+. ...++|+||+++.|++++
T Consensus 142 ~v~nK~D~~s~~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sal~~~~~~~l 189 (210)
T 1pui_A 142 VLLTKADKLASGA--RKAQLNMVREAVLAFNG-DVQVETFSSLKKQGVDKL 189 (210)
T ss_dssp EEEECGGGSCHHH--HHHHHHHHHHHHGGGCS-CEEEEECBTTTTBSHHHH
T ss_pred EEEecccCCCchh--HHHHHHHHHHHHHhcCC-CCceEEEeecCCCCHHHH
Confidence 8899999875322 11223344555555442 347899999999999984
No 217
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.38 E-value=1.2e-12 Score=157.74 Aligned_cols=108 Identities=12% Similarity=0.137 Sum_probs=70.3
Q ss_pred ceEEEeeChhhHH---HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHHHcCCCeEEEEEecCCccCc
Q psy3751 404 RKFIIADTPGHEQ---YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 404 ~~~~liDtpG~~~---~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~~~~~~~iivviNK~D~~~~ 479 (967)
..++||||||+.+ ....+...+..+|++|+|+|++. +......+.+. .+...+.+ +++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~-------~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ-------PCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS-------TTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC-------ccchhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 4699999999665 44556677789999999999988 55444444443 23334555 9999999998753
Q ss_pred C---H---HHHHHHHHHHH----HHHHHc-C-----CccceEEecccc--------------CCCccccc
Q psy3751 480 N---Q---IFYKRIVYAYK----KFAEDI-H-----FQNINTIPISAL--------------NGDNIISA 519 (967)
Q Consensus 480 ~---~---~~~~~i~~~~~----~~~~~~-~-----~~~~~ii~iSa~--------------~g~gi~~l 519 (967)
. . +.++++.+.+. ..+... + ....+++++||+ +|.|++++
T Consensus 246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L 315 (695)
T 2j69_A 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKF 315 (695)
T ss_dssp GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHH
T ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHH
Confidence 2 1 12222222222 222221 2 124579999999 99999884
No 218
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.38 E-value=1.1e-12 Score=136.70 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=104.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc-EEEEecc--hhhhh-----c
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET-LIVRSVE--DSIMK-----G 109 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~-i~~~~~~--~~~~~-----~ 109 (967)
++++|+||||+||+++++++.+.. .++.++|+|+|...++..++++++++++|++ ++++..+ ..+.. .
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~~~l~~~ 78 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATSSLTRD 78 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHHHHHHT
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhhhhcccc
Confidence 578999999999999999999873 4789999999986667789999999999999 9988776 22211 0
Q ss_pred -c-cc---c-CCCCcccchhhcHHH---H-HHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccc
Q psy3751 110 -T-VR---L-RKPNTDSRNAAQSIT---L-LETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWN 179 (967)
Q Consensus 110 -~-~~---~-~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~ 179 (967)
. .. . ....+..|..+|... + ...+.+.|.+.+++||+.+|...-.. .+|.++.
T Consensus 79 ~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~~~~-----------------~r~~~~~ 141 (232)
T 2pg3_A 79 SIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPD-----------------CRDEFVK 141 (232)
T ss_dssp TCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCGG-----------------GSHHHHH
T ss_pred cccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCCCCC-----------------CCHHHHH
Confidence 0 00 0 111233444444433 3 56778889999999999998642000 0000000
Q ss_pred cccc---cCCCCCceEEeeCCCCcHHHHHHHHHHcCC-CC
Q psy3751 180 LYNT---RVHPGENIRVFPISNWTELDIWQYIEREKI-IL 215 (967)
Q Consensus 180 ~~~~---~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~l-p~ 215 (967)
.++. .........++||++|++.|||.|++++|+ |+
T Consensus 142 ~~~~~~~~~~~~~~~i~~PL~~~~K~ei~~~a~~~gl~~~ 181 (232)
T 2pg3_A 142 ALNQAIVLGIARDIRFETPLMWLNKAETWALADYYQQLDT 181 (232)
T ss_dssp HHHHHHHHHHTSCCEEECTTTTCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHcCCCcc
Confidence 0000 000012356899999999999999999998 63
No 219
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.36 E-value=1.9e-12 Score=131.90 Aligned_cols=151 Identities=26% Similarity=0.268 Sum_probs=94.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP 402 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 402 (967)
..++|+++|+.|+|||||+++|++..-.. +....++.+.....+..+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~---------------------------------~~~~t~~~~~~~~~i~~~ 50 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL---------------------------------ESKSTIGVEFATRSIQVD 50 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------------------CCCSCEEEEEEEEET
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC---------------------------------CCCCccceeEEEEEEEEC
Confidence 45899999999999999999999722110 001112222222334444
Q ss_pred C--ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHHc--CCCeEEEEEecCCcc
Q psy3751 403 K--RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHLL--RIKHIIIAVNKMDLI 477 (967)
Q Consensus 403 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~~--~~~~iivviNK~D~~ 477 (967)
+ ..+.++||||++.|..........+|++++|+|... ... ......+...... ...++++|+||+|+.
T Consensus 51 g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 51 GKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK-------HLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp TEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC-------HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 4 356789999998876544445578999999999987 211 1122222222221 234589999999997
Q ss_pred CcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 478 NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 478 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+...... .+.+.+....++ .++.+||+++.|+.++.
T Consensus 124 ~~~~~~~----~~a~~l~~~~~~---~~~d~Sal~~~~i~~l~ 159 (199)
T 2f9l_A 124 HLRAVPT----DEARAFAEKNNL---SFIETSALDSTNVEEAF 159 (199)
T ss_dssp GGCCSCH----HHHHHHHHHTTC---EEEECCTTTCTTHHHHH
T ss_pred cccCcCH----HHHHHHHHHcCC---eEEEEeCCCCCCHHHHH
Confidence 5322111 223445555554 78999999999999854
No 220
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.36 E-value=1.5e-12 Score=135.84 Aligned_cols=164 Identities=11% Similarity=0.046 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET 96 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~ 96 (967)
.+...+.....|+.+++.. ++++|++|||+||+++++++.++++ .++.+++++++...++..+.++++++.+|++
T Consensus 6 ~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~g---~~v~av~~~~~~~~~~~~~~a~~~a~~lgi~ 82 (249)
T 3p52_A 6 WQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALK---ENVFALLMPTQISNKANLEDALRLCADLNLE 82 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHHT---TSEEEEECCSCCSSCHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHcC---CcEEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 4566677778888887764 6799999999999999999998753 4799999999987778899999999999999
Q ss_pred EEEEecchhhhhcccccC-CCC---cccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCC
Q psy3751 97 LIVRSVEDSIMKGTVRLR-KPN---TDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKS 172 (967)
Q Consensus 97 i~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~ 172 (967)
++++.....+........ ... |..|.++|...+...+.++|..++.||+. +|...- ....++.
T Consensus 83 ~~~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~-se~~~g-------~~t~~gd----- 149 (249)
T 3p52_A 83 YKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNK-SELLLG-------YGTIYGD----- 149 (249)
T ss_dssp EEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHHHT-------CSCTTTT-----
T ss_pred EEEEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCH-HHHHcc-------chhhhcc-----
Confidence 998877654332211111 112 33344455667888888888876666654 544210 0001110
Q ss_pred CCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 173 QRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 173 ~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
....++||.++++.||++++++.|+|
T Consensus 150 ----------------~~~~i~PL~~l~K~eV~~la~~~gip 175 (249)
T 3p52_A 150 ----------------LACAFNPIGSLYKSEIYALAKYLNLH 175 (249)
T ss_dssp ----------------TCCSEETTTTSCHHHHHHHHHHTTCC
T ss_pred ----------------ccCccccccCCcHHHHHHHHHHcCCc
Confidence 11348999999999999999999987
No 221
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.35 E-value=3e-12 Score=133.70 Aligned_cols=163 Identities=12% Similarity=0.017 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET 96 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~ 96 (967)
.+...+...+.|+.++... ++++|++|||+||+++++++.++.. +..+++++++...++..++++++++.+|++
T Consensus 9 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~~~----~~~av~~~~~~~~~~~~~~a~~~a~~lgi~ 84 (249)
T 3fiu_A 9 PKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGL----PTTALILPSDNNQHQDMQDALELIEMLNIE 84 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTTS----CEEEEECCCTTSCHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHhCC----CCEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 4566677777888777655 6789999999999999999999753 344999999877778899999999999999
Q ss_pred EEEEecchhhhhccc------ccCCCCcccc-----hhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccC
Q psy3751 97 LIVRSVEDSIMKGTV------RLRKPNTDSR-----NAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKF 165 (967)
Q Consensus 97 i~~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~ 165 (967)
++++...+.+..... ..+...|..| .++|...+...+.++|..++.||+ .+|... ......++
T Consensus 85 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn-~sE~~~--G~~t~~gd--- 158 (249)
T 3fiu_A 85 HYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDN-ACEWYM--GYFTKFGD--- 158 (249)
T ss_dssp EEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHH--TCSCTTTT---
T ss_pred EEEEEChHHHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCC-HHHHhc--CchhccCC---
Confidence 999887765443221 1012334444 334566688888889988888994 555421 11000011
Q ss_pred CCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 166 GQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 166 ~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
+...++||.++++.||++++++.|+|
T Consensus 159 -----------------------~~~~i~PL~~l~K~eVr~lA~~lglp 184 (249)
T 3fiu_A 159 -----------------------GAADILPLVNLKKSQVFELGKYLDVP 184 (249)
T ss_dssp -----------------------TCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred -----------------------CCcceeecccCcHHHHHHHHHHcCCc
Confidence 11357899999999999999999987
No 222
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.35 E-value=7.1e-13 Score=145.56 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=49.7
Q ss_pred CCceEEEeeChhhHH-------------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH-HHHHHHHHHcCCCeE
Q psy3751 402 PKRKFIIADTPGHEQ-------------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT-KRHSIIAHLLRIKHI 467 (967)
Q Consensus 402 ~~~~~~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t-~~~~~~~~~~~~~~i 467 (967)
.+.+++|+||||+.+ +...+...+..+|++++|+|+... ++..+. ...+..+...+.+ +
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~------~~~~~~~~~i~~~~~~~~~~-~ 201 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT------DLANSDALQLAKEVDPEGKR-T 201 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS------CSTTCSHHHHHHHHCSSCSS-E
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc------chhhhHHHHHHHHhCCCCCc-E
Confidence 456899999999642 556667778999999999997431 322222 2344444445655 8
Q ss_pred EEEEecCCccCcC
Q psy3751 468 IIAVNKMDLINYN 480 (967)
Q Consensus 468 ivviNK~D~~~~~ 480 (967)
|+|+||+|+.+..
T Consensus 202 i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 202 IGVITKLDLMDKG 214 (315)
T ss_dssp EEEEECTTSSCSS
T ss_pred EEEEcCcccCCcc
Confidence 9999999998643
No 223
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.34 E-value=2.2e-12 Score=136.53 Aligned_cols=166 Identities=18% Similarity=0.129 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLI 98 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~ 98 (967)
++...+...+.|+++ ..++++|++|||+||+++++++.++.. ..++.+++++++.. +..++++++++.+|++++
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g--~~~v~av~~~~~~~--~~~~~a~~~a~~lgi~~~ 79 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALG--KEKVLGLIMPYFEN--KDVEDAKLVAEKLGIGYK 79 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHC--GGGEEEEECCSSCS--THHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcC--CCcEEEEEeCCCCc--hHHHHHHHHHHHhCCCEE
Confidence 566667777777776 568899999999999999999999863 13689999999964 778999999999999999
Q ss_pred EEecchhhhhcccccC--CCCcccc---hhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCC
Q psy3751 99 VRSVEDSIMKGTVRLR--KPNTDSR---NAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQ 173 (967)
Q Consensus 99 ~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~ 173 (967)
++.....+........ ..+...| .++|...+.+.+.++|..++.||++.++...- ...++
T Consensus 80 ~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e~~~Gy--------~t~~g------- 144 (257)
T 2e18_A 80 VINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFLTGY--------FTKWG------- 144 (257)
T ss_dssp ECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHHHHHTC--------SCTTS-------
T ss_pred EEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhHHhcCC--------eeccC-------
Confidence 8877653221111111 1112223 33556678888888899999999975543110 00000
Q ss_pred CccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 174 RPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 174 ~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
.....++||.+|++.||+.|++++|+|+..+.
T Consensus 145 --------------~~~~~i~Pl~~l~K~ev~~la~~~gip~~i~~ 176 (257)
T 2e18_A 145 --------------DGASDYAPIINLYKTEVWEIAKRIGVPERIVK 176 (257)
T ss_dssp --------------TTCSSBCTTTTSCHHHHHHHHHHHTCCHHHHH
T ss_pred --------------CCccCEeecCCCcHHHHHHHHHHcCCCHHHhC
Confidence 01235789999999999999999999854333
No 224
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.34 E-value=2.8e-12 Score=136.44 Aligned_cols=165 Identities=15% Similarity=0.064 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET 96 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~ 96 (967)
.++..+...+.|+.++... ++++|++|||+||+++++++.++. +.++.+++++++...++..++++++++.+|++
T Consensus 5 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~ 81 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMPSSVSMPENKTDALNLCEKFSIP 81 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECCCSSSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCC
Confidence 4556666777777766543 789999999999999999999985 24689999999987788999999999999999
Q ss_pred EEEEecchhhhhcccccC-CCCcccc---hhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCC
Q psy3751 97 LIVRSVEDSIMKGTVRLR-KPNTDSR---NAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKS 172 (967)
Q Consensus 97 i~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~ 172 (967)
++++.....+........ ..+...| .++|...+.+.+.+.|..++.+|+. +|...-. . ..++
T Consensus 82 ~~~i~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~-~E~~~Gy----~---t~~g------ 147 (268)
T 1xng_A 82 YTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNK-SERMLGY----G---TLFG------ 147 (268)
T ss_dssp EEECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH-HHHHHTC----S---CTTT------
T ss_pred EEEEeChHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcH-HHHhcCc----c---cccC------
Confidence 999876653221111111 0112223 3355667888888889888888864 5543111 0 0000
Q ss_pred CCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCC
Q psy3751 173 QRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIIL 215 (967)
Q Consensus 173 ~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~ 215 (967)
.....++||.+|++.||++|++.+|+|.
T Consensus 148 ---------------d~~~~i~PL~~l~K~ev~~la~~~gip~ 175 (268)
T 1xng_A 148 ---------------DLACAINPIGELFKTEVYELARRLNIPK 175 (268)
T ss_dssp ---------------TTCCSEETTTTSCHHHHHHHHHHTTCCH
T ss_pred ---------------CCCeeEEecCCCCHHHHHHHHHHcCCcH
Confidence 0124689999999999999999999983
No 225
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=1.8e-12 Score=145.29 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=24.3
Q ss_pred ceEEEeeChhhHHH-------HHHHHhhcccCCEEEEEEeCCCC
Q psy3751 404 RKFIIADTPGHEQY-------TRNMITGASTADAVIILIDASKI 440 (967)
Q Consensus 404 ~~~~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~~ 440 (967)
.++.|+||||+.+. ....+..++.+|++++|+|+.++
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 46899999997542 22334567899999999999873
No 226
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=2e-12 Score=143.66 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=75.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|++|+|||||+++|++... ..... .+....+...+++++.....+..
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~-~~~~~-----------------------~~~~~~~~~~ti~~~~~~~~~~~ 90 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDL-YPERV-----------------------IPGAAEKIERTVQIEASTVEIEE 90 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------------------------------CEEEEEEEEC---
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCC-CCCCc-----------------------ccCCCcccCCceeEEEEEEEeec
Confidence 3558899999999999999999976311 10000 00011111223333333233333
Q ss_pred CCc--eEEEeeChhhHHHHH-----------------HHHhhcc----------cCCEEEEEEeCCCCCCCCCCCchhhH
Q psy3751 402 PKR--KFIIADTPGHEQYTR-----------------NMITGAS----------TADAVIILIDASKIKFNPSVNLLTQT 452 (967)
Q Consensus 402 ~~~--~~~liDtpG~~~~~~-----------------~~~~~~~----------~aD~~ilVvda~~~~~~~~~g~~~~t 452 (967)
++. .++++||||+.++.. ..+.... .+|+++++|+.... ++....
T Consensus 91 ~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~------~l~~~d 164 (361)
T 2qag_A 91 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH------GLKPLD 164 (361)
T ss_dssp -CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS------SCCHHH
T ss_pred CCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC------CcchhH
Confidence 333 689999999833221 1111111 23578888887431 343433
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 453 KRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 453 ~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.+.+..+ ..+++ +|+|+||+|+... ......++.+..+++..++ +++++||++|.| ++
T Consensus 165 ~~~~~~l-~~~~p-iIlV~NK~Dl~~~--~ev~~~k~~i~~~~~~~~i---~~~~~Sa~~~~~-~e 222 (361)
T 2qag_A 165 VAFMKAI-HNKVN-IVPVIAKADTLTL--KERERLKKRILDEIEEHNI---KIYHLPDAESDE-DE 222 (361)
T ss_dssp HHHHHHT-CS-SC-EEEEEECCSSSCH--HHHHHHHHHHHHHTTCC-C---CSCCCC---------
T ss_pred HHHHHHh-ccCCC-EEEEEECCCCCCH--HHHHHHHHHHHHHHHHCCC---CEEeCCCcCCCc-ch
Confidence 3333322 23344 9999999999853 2233444556666666554 889999999998 54
No 227
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=135.50 Aligned_cols=80 Identities=20% Similarity=0.103 Sum_probs=48.7
Q ss_pred cCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHH----HcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCcc
Q psy3751 427 TADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH----LLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQN 502 (967)
Q Consensus 427 ~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~----~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~ 502 (967)
.||++|+|+|+++... ..+. .....+..+. ..++| +|+|+||+|+.+... + ++.+.+.+... .
T Consensus 162 ~ad~vilV~D~t~~~~---~s~~-~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~-----v-~~~~~~~~~~~--~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMN---RNFD-DQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVERY-----I-RDAHTFALSKK--N 228 (255)
T ss_dssp ECCEEEEEEECBC-------CHH-HHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCHHH-----H-HHHHHHHHTSS--S
T ss_pred cCCEEEEEEECCCCch---hhHH-HHHHHHHHHHHHhccCCCC-EEEEEEcccccccHH-----H-HHHHHHHHhcC--C
Confidence 6999999999987200 0111 1222222221 23455 999999999974211 1 34445554421 2
Q ss_pred ceEEeccccCCCccccc
Q psy3751 503 INTIPISALNGDNIISA 519 (967)
Q Consensus 503 ~~ii~iSa~~g~gi~~l 519 (967)
.+++++||++|.|++++
T Consensus 229 ~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 229 LQVVETSARSNVNVDLA 245 (255)
T ss_dssp CCEEECBTTTTBSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 48999999999999984
No 228
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.29 E-value=8e-12 Score=126.27 Aligned_cols=151 Identities=25% Similarity=0.249 Sum_probs=94.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|..|+|||||+++|++..-. .+....++.+.....+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~i~~ 73 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN---------------------------------LESKSTIGVEFATRSIQV 73 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCC---------------------------------CSCCCCCSEEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC---------------------------------CCCCCccceEEEEEEEEE
Confidence 45689999999999999999999872111 001122233333334445
Q ss_pred CCc--eEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch-hhHHHHHHHHHH--cCCCeEEEEEecCCc
Q psy3751 402 PKR--KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL-TQTKRHSIIAHL--LRIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~~--~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~-~~t~~~~~~~~~--~~~~~iivviNK~D~ 476 (967)
++. .+.++||||+++|...+......+|.+++|+|..+ ... ......+..... ....++++|+||+|+
T Consensus 74 ~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl 146 (191)
T 1oix_A 74 DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK-------HLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146 (191)
T ss_dssp TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC-------HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 554 45579999988765554555677899999999886 111 111222222222 123458999999998
Q ss_pred cCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 477 INYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 477 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+..+... ...+.+..+.++ .++.+||+++.|+.++
T Consensus 147 ~~~~~~~~----~~a~~l~~~~~~---~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 147 RHLRAVPT----DEARAFAEKNGL---SFIETSALDSTNVEAA 182 (191)
T ss_dssp GGGCCSCH----HHHHHHHHHTTC---EEEECCTTTCTTHHHH
T ss_pred ccccccCH----HHHHHHHHHcCC---EEEEEeCCCCCCHHHH
Confidence 75322111 223445555554 7899999999999984
No 229
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.27 E-value=5.6e-12 Score=140.18 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=66.5
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
...+..+.||||||...-. ...+..+|++++|+|+..+.... .+..+ .+..+ .++|+||+|+.+.
T Consensus 168 ~~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~--~l~~~---------~~~~p-~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQ--GIKKG---------VLELA-DIVVVNKADGEHH 232 (355)
T ss_dssp HHTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTT--TCCTT---------SGGGC-SEEEEECCCGGGH
T ss_pred hhCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHH--HHHHh---------HhhcC-CEEEEECCCCcCh
Confidence 4467889999999944322 22248899999999987622110 11100 12234 7889999999742
Q ss_pred CHHHHHHHHHHHHHHHHHcCC----ccceEEeccccCCCccccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHF----QNINTIPISALNGDNIISASN 521 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~----~~~~ii~iSa~~g~gi~~l~~ 521 (967)
........++...+..++. ...+++++||++|.|++++.+
T Consensus 233 --~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 233 --KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp --HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred --hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 2334445555555544431 135899999999999998643
No 230
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.27 E-value=4.2e-12 Score=143.15 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=107.0
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCC-CCChhhHHHHHHHHHHh-----CCcEEEEecchhhhhccc
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTG-HNFPEVISFRDNCISKL-----GETLIVRSVEDSIMKGTV 111 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg-~~~pet~~~~~~~~~~~-----gi~i~~~~~~~~~~~~~~ 111 (967)
+++++++|||+||+++++++.+. +.++.++|+|++ +..+...+.++++++.+ |++++++........ .
T Consensus 188 ~kvlvalSGGvDS~vll~ll~~~----G~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~~-i- 261 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTMKR----GVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKT-I- 261 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHB----TEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHHHH-H-
T ss_pred CeEEEEeCCCChHHHHHHHHHHc----CCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcHHHHH-H-
Confidence 46889999999999999999886 668899999986 44456678888888888 899999877654321 1
Q ss_pred ccCCCCcccchhhcHHH---HHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCC
Q psy3751 112 RLRKPNTDSRNAAQSIT---LLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPG 188 (967)
Q Consensus 112 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 188 (967)
....+.+..|..||+.. +.+.+++.|.+++++|++.+|..+...+++...... .
T Consensus 262 ~~~~~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ae~~l~~l~~~~~~-----------------------~ 318 (413)
T 2c5s_A 262 NKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEV-----------------------T 318 (413)
T ss_dssp HHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGGG-----------------------C
T ss_pred HhcCCcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHhccccc-----------------------C
Confidence 11223334455555533 357788899999999999998765433332211110 1
Q ss_pred CceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 189 ENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 189 ~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
+...++||+.|+++||.+|+++.|++
T Consensus 319 ~~~virPL~~l~K~eI~~~a~~~Gl~ 344 (413)
T 2c5s_A 319 NYPVIRPLITMDKLEIIKIAEEIGTY 344 (413)
T ss_dssp CSCEECTTTTCCHHHHHHHHHHTTCH
T ss_pred CCEEEeccCCCCHHHHHHHHHHcCCC
Confidence 13578999999999999999999984
No 231
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.27 E-value=6.8e-12 Score=138.26 Aligned_cols=153 Identities=15% Similarity=0.074 Sum_probs=96.8
Q ss_pred hhhhhhhcccccccccchhhHHhhhcccCcc----cccccccCCCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHH
Q psy3751 283 VTQITERGATRIDDQNSEASMEKRKKTEAPE----KKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDA 358 (967)
Q Consensus 283 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~ 358 (967)
....||....++..+......+......... ............+|+|||.||+|||||+|+|++....+
T Consensus 27 k~k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v------- 99 (376)
T 4a9a_A 27 KNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEA------- 99 (376)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCG-------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcc-------
Confidence 3555665555555555555544432222211 11223456677899999999999999999999732221
Q ss_pred HhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCceEEEeeChhhH-------HHHHHHHhhcccCCEE
Q psy3751 359 VSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHE-------QYTRNMITGASTADAV 431 (967)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~liDtpG~~-------~~~~~~~~~~~~aD~~ 431 (967)
....+.|++.....+.+++.++.|+||||.. .....++..++.||++
T Consensus 100 --------------------------~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~i 153 (376)
T 4a9a_A 100 --------------------------AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLL 153 (376)
T ss_dssp --------------------------GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEE
T ss_pred --------------------------cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCcc
Confidence 1124567777777788899999999999942 2345667778999999
Q ss_pred EEEEeCCCCCCCCCCCchhhHHHHHHHHHHc----CCCeEEEEEecCCc
Q psy3751 432 IILIDASKIKFNPSVNLLTQTKRHSIIAHLL----RIKHIIIAVNKMDL 476 (967)
Q Consensus 432 ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~----~~~~iivviNK~D~ 476 (967)
++|||+.+ .. .+.......+... .-++.++++||+|.
T Consensus 154 l~vvD~~~-------p~-~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 154 FIILDVNK-------PL-HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEETTS-------HH-HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ccccccCc-------cH-HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999987 21 1111111112222 23456788999996
No 232
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.27 E-value=1e-11 Score=137.22 Aligned_cols=103 Identities=20% Similarity=0.103 Sum_probs=64.8
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
..+..++|+||||+.++...+ ...+|++++|+|+..+. ..+.... ...+.+ .++|+||+|+.+.
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~-------~~~~l~~----~~~~~p-~ivv~NK~Dl~~~- 209 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGD-------DLQGIKK----GLMEVA-DLIVINKDDGDNH- 209 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTCH-
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccH-------HHHHHHH----hhhccc-CEEEEECCCCCCh-
Confidence 567889999999977655443 47899999999997621 1111000 112334 6889999999753
Q ss_pred HHHHHHHHHHHHHHHHHcCCc----cceEEeccccCCCcccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQ----NINTIPISALNGDNIISAS 520 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~----~~~ii~iSa~~g~gi~~l~ 520 (967)
..+....++++..+..++.. ..+++++||++|.|++++.
T Consensus 210 -~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~ 252 (341)
T 2p67_A 210 -TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIW 252 (341)
T ss_dssp -HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred -HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHH
Confidence 22344444555544443320 2478999999999999854
No 233
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.27 E-value=1e-11 Score=133.32 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=92.5
Q ss_pred EEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCce
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRK 405 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 405 (967)
||+++|..|+|||||++++.+.... ......+.|+.+.+..+. ...+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~--------------------------------~~~~~~~~Tig~~~~~v~-~~v~ 47 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP--------------------------------LDTLYLESTSNPSLEHFS-TLID 47 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS--------------------------------GGGTTCCCCCSCCCEEEC-SSSC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC--------------------------------CccceecCeeeeeeEEEc-cEEE
Confidence 5899999999999999987641100 000112344444443332 2367
Q ss_pred EEEeeChhhHHHHH---HHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHH-cCCCeEEEEEecCCccCcCH
Q psy3751 406 FIIADTPGHEQYTR---NMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLINYNQ 481 (967)
Q Consensus 406 ~~liDtpG~~~~~~---~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~-~~~~~iivviNK~D~~~~~~ 481 (967)
+.+|||||+++|.. .....++.++++|+|+|+++. |. .......+.+..+.. ..-.++++|.||+|+.+.++
T Consensus 48 LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~---~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~ 123 (331)
T 3r7w_B 48 LAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YI---NAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDF 123 (331)
T ss_dssp EEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TT---HHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHH
T ss_pred EEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HH---HHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhh
Confidence 99999999999853 234567899999999999983 21 111111222222221 22234899999999986422
Q ss_pred --HHHHHHHHHHHHHHHHcCC--ccceEEeccccCCCcccccc
Q psy3751 482 --IFYKRIVYAYKKFAEDIHF--QNINTIPISALNGDNIISAS 520 (967)
Q Consensus 482 --~~~~~i~~~~~~~~~~~~~--~~~~ii~iSa~~g~gi~~l~ 520 (967)
+...++..+..+-+.+.++ -+++|+.+||++ .||.+..
T Consensus 124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAF 165 (331)
T 3r7w_B 124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAF 165 (331)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHH
T ss_pred hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHH
Confidence 1122333322222222221 146899999998 5887753
No 234
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.27 E-value=1.3e-11 Score=143.69 Aligned_cols=185 Identities=15% Similarity=0.086 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHH-HHHHhCCcE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDN-CISKLGETL 97 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~-~~~~~gi~i 97 (967)
++..++..++.|++.+.. +++++++|||+||+|+++++.+++. .++.++|+|+|.......+.+.+ +++.+|+++
T Consensus 210 ~~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~G---~~v~av~v~~g~~~~~e~~~~~~~la~~lgi~~ 285 (525)
T 1gpm_A 210 PAKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAIG---KNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNI 285 (525)
T ss_dssp HHHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHHG---GGEEEEEEECSCSCTTHHHHHHHHHTTTTCCCE
T ss_pred HHHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHhC---CCEEEEEEeCCCCCchHHHHHHHHHHHHhCCcE
Confidence 566777788888887755 7899999999999999999998753 47999999999865555566644 899999999
Q ss_pred EEEecchhhhhcccccCCCC--cccchhhcHHHHHHHHHHc-CCcEEEEeccchhhHhhhccccccccccCCCCCCCCCC
Q psy3751 98 IVRSVEDSIMKGTVRLRKPN--TDSRNAAQSITLLETIKEF-KFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQR 174 (967)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~ 174 (967)
+++.....+.........|. +..|+..+...+.+.+++. |.+.+++|++.+|..+.... ....... .++..
T Consensus 286 ~~v~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~D~~E~~~~-~~~~s~~-----iks~~ 359 (525)
T 1gpm_A 286 VHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAAS-ATGKAHV-----IKSHH 359 (525)
T ss_dssp EEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTTC-------------------
T ss_pred EEEeccHHHHHhhcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCcchhhhcCc-ccccccc-----ccccc
Confidence 99988775544222111111 1123333445577778887 88999999998877654210 0000000 00000
Q ss_pred ccccccccccCC-CCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 175 PELWNLYNTRVH-PGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 175 p~~~~~~~~~~~-~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
.+ .... ......++||.+|+++||++|.++.|+|....+
T Consensus 360 -~l-----~gl~~~~~~~~i~PL~~l~K~EVr~la~~lglp~~i~~ 399 (525)
T 1gpm_A 360 -NV-----GGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLY 399 (525)
T ss_dssp ---------------CCEEECTTTTCCHHHHHHHHHHTTCCHHHHT
T ss_pred -cc-----cccccccCCcEEehhhcCCHHHHHHHHHHcCCCHHhcc
Confidence 00 0000 112357899999999999999999999976555
No 235
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.26 E-value=1.5e-11 Score=136.01 Aligned_cols=104 Identities=20% Similarity=0.138 Sum_probs=59.6
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
..+..+.|+||||..... ......+|++++|+|+.. +...+ .+.. ..+..+ .++|+||+|+.+..
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~-------~~~~~---~i~~-~il~~~-~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAG-------GDELQ---GIKR-GIIEMA-DLVAVTKSDGDLIV 228 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGGGHH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCc-------chhHH---HhHH-HHHhcC-CEEEEeeecCCCch
Confidence 467789999999953221 122468999999999987 22111 1111 123445 67889999997421
Q ss_pred HHHHHHHHHHHHHHHHHcCC----ccceEEeccccCCCccccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHF----QNINTIPISALNGDNIISASN 521 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~----~~~~ii~iSa~~g~gi~~l~~ 521 (967)
........+...++.... ..++++++||++|.|++++.+
T Consensus 229 --~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~ 271 (349)
T 2www_A 229 --PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWD 271 (349)
T ss_dssp --HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHH
T ss_pred --hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHH
Confidence 122222333333322211 135789999999999998543
No 236
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.24 E-value=8.1e-12 Score=126.34 Aligned_cols=115 Identities=24% Similarity=0.287 Sum_probs=68.3
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
...++|+++|.+|+|||||+++|++..-.. .......+++.+ .
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~------------------------------~~~~~~~~~~~~-------~ 88 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP------------------------------TVVSQEPLSAAD-------Y 88 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------------------------------C-------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------ccccCCCceeee-------e
Confidence 466899999999999999999999732100 000001112211 1
Q ss_pred CCceEEEeeChhhHHHHHHHHhhc----ccCCEEEEEEeCC-CCCCCCCCCchhhHHHHHH-HHHH------cCCCeEEE
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGA----STADAVIILIDAS-KIKFNPSVNLLTQTKRHSI-IAHL------LRIKHIII 469 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~----~~aD~~ilVvda~-~~~~~~~~g~~~~t~~~~~-~~~~------~~~~~iiv 469 (967)
....+.+|||||+.+|...+...+ ..+|++|+|+|++ .. .......+.+. +... .++| +++
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p-~il 161 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP------KKLTTTAEFLVDILSITESSCENGID-ILI 161 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH------HHHHHHHHHHHHHHHHHHHHSTTCCC-EEE
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc------hhHHHHHHHHHHHHhhhhhccccCCC-EEE
Confidence 456789999999876543333333 4489999999998 30 11111122221 1111 2455 999
Q ss_pred EEecCCccCcC
Q psy3751 470 AVNKMDLINYN 480 (967)
Q Consensus 470 viNK~D~~~~~ 480 (967)
|+||+|+.+..
T Consensus 162 v~nK~Dl~~~~ 172 (193)
T 2ged_A 162 ACNKSELFTAR 172 (193)
T ss_dssp EEECTTSTTCC
T ss_pred EEEchHhcCCC
Confidence 99999998643
No 237
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.22 E-value=5.7e-12 Score=140.18 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=61.1
Q ss_pred CceEEEeeChhhH-------------HHHHHHHhhcccC-CEEEEEEeCCCCCCCCCCCchhhHHH-HHHHHHHcCCCeE
Q psy3751 403 KRKFIIADTPGHE-------------QYTRNMITGASTA-DAVIILIDASKIKFNPSVNLLTQTKR-HSIIAHLLRIKHI 467 (967)
Q Consensus 403 ~~~~~liDtpG~~-------------~~~~~~~~~~~~a-D~~ilVvda~~~~~~~~~g~~~~t~~-~~~~~~~~~~~~i 467 (967)
..+++||||||.. .+...+...+..+ +++++|+|++. ++..+... .+..+...+.+ +
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-------~~~~~~~~~i~~~~~~~~~~-~ 200 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-------DLANSDALKVAKEVDPQGQR-T 200 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-------CGGGCHHHHHHHHHCTTCTT-E
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-------ccchhHHHHHHHHhCcCCCc-e
Confidence 4689999999942 2333344445444 46666778776 45444432 33333334555 8
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+|+||+|+.+.... ..+.++.....+.....+++++||++|.|++++.
T Consensus 201 i~V~NK~Dl~~~~~~----~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~ 249 (353)
T 2x2e_A 201 IGVITKLDLMDEGTD----ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 249 (353)
T ss_dssp EEEEECGGGSCTTCC----CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHH
T ss_pred EEEeccccccCcchh----HHHHHhCCcccccCCceEEEeCCcccccccccHH
Confidence 999999999864321 1111110000111112478999999999998854
No 238
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.20 E-value=3e-11 Score=141.38 Aligned_cols=68 Identities=25% Similarity=0.288 Sum_probs=52.5
Q ss_pred ceEEEeeChhhHH-----------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEe
Q psy3751 404 RKFIIADTPGHEQ-----------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472 (967)
Q Consensus 404 ~~~~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviN 472 (967)
.+++||||||+.+ |...+...+..+|++|+|+|+++. +...+..+.+..+...+.+ +++|+|
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~------~~~~~~~~~l~~l~~~~~p-vilVlN 226 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL------EISDEFSEAIGALRGHEDK-IRVVLN 226 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC------CCCHHHHHHHHHTTTCGGG-EEEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC------CCCHHHHHHHHHHHhcCCC-EEEEEE
Confidence 4789999999764 666677778999999999999872 3445666666655555555 899999
Q ss_pred cCCccC
Q psy3751 473 KMDLIN 478 (967)
Q Consensus 473 K~D~~~ 478 (967)
|+|+++
T Consensus 227 K~Dl~~ 232 (550)
T 2qpt_A 227 KADMVE 232 (550)
T ss_dssp CGGGSC
T ss_pred CCCccC
Confidence 999985
No 239
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.19 E-value=2.8e-11 Score=134.87 Aligned_cols=152 Identities=13% Similarity=0.015 Sum_probs=106.9
Q ss_pred HcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchhhhhccc--
Q psy3751 35 AECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDSIMKGTV-- 111 (967)
Q Consensus 35 ~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~~~~~~~-- 111 (967)
...++++|+||||+||+++++++.+. +.++.++|+|+|...++..+++++.|+++|+ +++++.....+.....
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~eef~~~v~p~ 83 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAA 83 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECHHHHHHHHHHH
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeChHHHHHHhHHH
Confidence 34578999999999999999999886 5689999999997544567899999999999 8999988654442210
Q ss_pred -cc---C-------CCC-cccchhhcHHHHHHHHHHcCCcEEEEeccc--hhhHhhhccccccccccCCCCCCCCCCccc
Q psy3751 112 -RL---R-------KPN-TDSRNAAQSITLLETIKEFKFDACIGGARR--DEEKARAKERIFSFRDKFGQWNPKSQRPEL 177 (967)
Q Consensus 112 -~~---~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~--des~~R~~~~~~~~~~~~~~~~~~~~~p~~ 177 (967)
.. + .+. ...++.+....+.+.+++.|.+++++|++. +|. .|....+...
T Consensus 84 i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq-~rf~~~~~al---------------- 146 (455)
T 1k92_A 84 IQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDI-ERFYRYGLLT---------------- 146 (455)
T ss_dssp HHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHH-HHHHHHHHHH----------------
T ss_pred HHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcCCCCCH-HHHHHHHHhc----------------
Confidence 00 0 000 011122334567888888999999999963 332 2322111000
Q ss_pred cccccccCCCCCceEEeeCCC-------CcHHHHHHHHHHcCCCCC
Q psy3751 178 WNLYNTRVHPGENIRVFPISN-------WTELDIWQYIEREKIILP 216 (967)
Q Consensus 178 ~~~~~~~~~~~~~~~i~Pl~~-------wt~~dV~~yi~~~~lp~~ 216 (967)
..+...+.|+.+ |+++||.+|++++|+|+.
T Consensus 147 ---------~p~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~ 183 (455)
T 1k92_A 147 ---------NAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYK 183 (455)
T ss_dssp ---------CTTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCC
T ss_pred ---------CCCCEEECeeccccccccCCCHHHHHHHHHHcCCCcc
Confidence 001346789988 699999999999999986
No 240
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.19 E-value=5.3e-11 Score=133.50 Aligned_cols=148 Identities=20% Similarity=0.270 Sum_probs=89.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK 403 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 403 (967)
.-.|+++|++|||||||+++|++....+ .+. ...|.......+..++
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i---------------------------~~~------~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKI---------------------------APY------PFTTLSPNLGVVEVSE 203 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEE---------------------------CCC------TTCSSCCEEEEEECSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccc---------------------------cCc------ccceecceeeEEEecC
Confidence 3469999999999999999998732111 000 1112222222344444
Q ss_pred -ceEEEeeChhhHH-------HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhH----HHHHHHHHH-cCCCeEEEE
Q psy3751 404 -RKFIIADTPGHEQ-------YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT----KRHSIIAHL-LRIKHIIIA 470 (967)
Q Consensus 404 -~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t----~~~~~~~~~-~~~~~iivv 470 (967)
..++++|+||+.+ +.......+..+|.+++|+|++. ....+. ++...++.. ...| .|+|
T Consensus 204 ~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~-------~~~~~ls~g~~el~~la~aL~~~P-~ILV 275 (416)
T 1udx_A 204 EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD-------EPLKTLETLRKEVGAYDPALLRRP-SLVA 275 (416)
T ss_dssp SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTS-------CHHHHHHHHHHHHHHHCHHHHHSC-EEEE
T ss_pred cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCcc-------CCHHHHHHHHHHHHHHhHHhhcCC-EEEE
Confidence 6799999999621 12233444577999999999962 121122 122222222 2344 7778
Q ss_pred EecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 471 VNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 471 iNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
+||+|+... .. .+.+...++..+. +++++||++++|++++.+
T Consensus 276 lNKlDl~~~--~~----~~~l~~~l~~~g~---~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 276 LNKVDLLEE--EA----VKALADALAREGL---AVLPVSALTGAGLPALKE 317 (416)
T ss_dssp EECCTTSCH--HH----HHHHHHHHHTTTS---CEEECCTTTCTTHHHHHH
T ss_pred EECCChhhH--HH----HHHHHHHHHhcCC---eEEEEECCCccCHHHHHH
Confidence 899999853 22 2333444444443 789999999999998543
No 241
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.18 E-value=3e-11 Score=143.67 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=65.4
Q ss_pred CceEEEeeChhhH-------------HHHHHHHhhc-ccCCEEEEEEeCCCCCCCCCCCchhhHH-HHHHHHHHcCCCeE
Q psy3751 403 KRKFIIADTPGHE-------------QYTRNMITGA-STADAVIILIDASKIKFNPSVNLLTQTK-RHSIIAHLLRIKHI 467 (967)
Q Consensus 403 ~~~~~liDtpG~~-------------~~~~~~~~~~-~~aD~~ilVvda~~~~~~~~~g~~~~t~-~~~~~~~~~~~~~i 467 (967)
..+++|+||||.. .+...+...+ ..+|++++|+|++. ++..+.. ..+..+...+.+ +
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~-------~~~~~d~l~ll~~L~~~g~p-v 220 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-------DLANSDALKIAKEVDPQGQR-T 220 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS-------CSSSCHHHHHHHHHCTTCSS-E
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC-------CcchhHHHHHHHHHHhcCCC-E
Confidence 4579999999932 1222233333 57899999999998 5555544 444445455655 8
Q ss_pred EEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 468 IIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 468 ivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+|+||+|+++.... ...+. ..-...+.....+++++||++|.|++++.
T Consensus 221 IlVlNKiDlv~~~~~-~~~il---~~~~~~l~lg~~~VV~iSA~~G~GvdeL~ 269 (772)
T 3zvr_A 221 IGVITKLDLMDEGTD-ARDVL---ENKLLPLRRGYIGVVNRSQKDIDGKKDIT 269 (772)
T ss_dssp EEEEECTTSSCTTCC-SHHHH---TTCSSCCSSCEEECCCCCCEESSSSEEHH
T ss_pred EEEEeCcccCCcchh-hHHHH---HHHhhhhhccCCceEEecccccccchhHH
Confidence 999999999864321 11110 00000011123578999999999999853
No 242
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.12 E-value=3e-11 Score=134.84 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=64.1
Q ss_pred CceEEEeeChhhHHH-------------HHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEE
Q psy3751 403 KRKFIIADTPGHEQY-------------TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIII 469 (967)
Q Consensus 403 ~~~~~liDtpG~~~~-------------~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iiv 469 (967)
...++||||||..++ ...+...+..+|++|+|+|+.... ....+....+..+...+.+ +|+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~-----~~~~~~~~l~~~~~~~~~~-~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD-----LATSDAIKISREVDPSGDR-TFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC-----GGGCHHHHHHHHSCTTCTT-EEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC-----cCCHHHHHHHHHhcccCCC-EEE
Confidence 457999999996554 445566678999999999876411 1112222232322333445 899
Q ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 470 AVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 470 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+||+|+.+..... .+.++.....+ ..+++++|+.++.++++.
T Consensus 209 V~nK~Dl~~~~~~~----~~~~~~~~~~~---~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 209 VLTKIDLMDKGTDA----VEILEGRSFKL---KYPWVGVVNRSQADINKN 251 (360)
T ss_dssp EEECGGGCCTTCCS----HHHHTTSSSCC---SSCCEEECCCCHHHHHTT
T ss_pred EEeCCccCCCcccH----HHHHcCccccc---cCCeEEEEECChHHhccC
Confidence 99999998643211 11121111122 347899999999988764
No 243
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.11 E-value=1.9e-10 Score=128.29 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=104.2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCc-EEEEecchhhhhccc----
Q psy3751 37 CNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGET-LIVRSVEDSIMKGTV---- 111 (967)
Q Consensus 37 ~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~-i~~~~~~~~~~~~~~---- 111 (967)
.++++++||||+||+++++++.+. +.++.++|+|+|.. +..++++++|+++|++ ++++.....+.....
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g~~--~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i 78 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIGQK--EDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAI 78 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESSCC--CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHH
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECCcH--HHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHH
Confidence 367899999999999999999886 56789999999974 5579999999999998 888777644432211
Q ss_pred -cc-CCCCcccch-----hhcHHHHHHHHHHcCCcEEEEeccchhh-HhhhccccccccccCCCCCCCCCCccccccccc
Q psy3751 112 -RL-RKPNTDSRN-----AAQSITLLETIKEFKFDACIGGARRDEE-KARAKERIFSFRDKFGQWNPKSQRPELWNLYNT 183 (967)
Q Consensus 112 -~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~G~R~des-~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 183 (967)
.. ....+..|. .++...+.+.+++.|.+++++||+.++. ..|..+... ..
T Consensus 79 ~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~lg~~---~l------------------- 136 (413)
T 2nz2_A 79 QSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCY---SL------------------- 136 (413)
T ss_dssp HTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHH---HH-------------------
T ss_pred HhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHHHHHHH---hc-------------------
Confidence 00 011223332 2334567788888999999999998322 123211000 00
Q ss_pred cCCCCCceEEeeCC------CC-cHHHHHHHHHHcCCCCC
Q psy3751 184 RVHPGENIRVFPIS------NW-TELDIWQYIEREKIILP 216 (967)
Q Consensus 184 ~~~~~~~~~i~Pl~------~w-t~~dV~~yi~~~~lp~~ 216 (967)
......++|+. +| +++||.+|++++|+|+.
T Consensus 137 ---~p~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~ 173 (413)
T 2nz2_A 137 ---APQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIP 173 (413)
T ss_dssp ---CTTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCC
T ss_pred ---CCCCceeccccchhhhccCCCHHHHHHHHHHcCCCee
Confidence 01135689999 89 99999999999999986
No 244
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.11 E-value=4.1e-11 Score=124.05 Aligned_cols=99 Identities=10% Similarity=0.129 Sum_probs=58.8
Q ss_pred cCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcC
Q psy3751 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYN 480 (967)
Q Consensus 401 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~ 480 (967)
..+..+.+|||+|..... . .....++.+++|+|+.. +...+. . .....+.+ +++|+||+|+.+..
T Consensus 106 ~~~~d~iiidt~G~~~~~--~-~~~~~~~~~i~vvd~~~-------~~~~~~-~---~~~~~~~~-~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICP--V-DFDLGENYRVVMVSVTE-------GDDVVE-K---HPEIFRVA-DLIVINKVALAEAV 170 (221)
T ss_dssp GTTCSEEEEEEEEBSSGG--G-GCCCSCSEEEEEEEGGG-------CTTHHH-H---CHHHHHTC-SEEEEECGGGHHHH
T ss_pred cCCCCEEEEeCCCCCCCC--c-hhccccCcEEEEEeCCC-------cchhhh-h---hhhhhhcC-CEEEEecccCCcch
Confidence 345689999999941100 0 00124689999999987 322111 1 12223555 78889999986421
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 481 QIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 481 ~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
....+++.+. ++.++ ...+++++||++|.|++++
T Consensus 171 ~~~~~~~~~~----~~~~~-~~~~i~~~Sa~~g~gi~~l 204 (221)
T 2wsm_A 171 GADVEKMKAD----AKLIN-PRAKIIEMDLKTGKGFEEW 204 (221)
T ss_dssp TCCHHHHHHH----HHHHC-TTSEEEECBTTTTBTHHHH
T ss_pred hhHHHHHHHH----HHHhC-CCCeEEEeecCCCCCHHHH
Confidence 1112333333 33333 2358999999999999984
No 245
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.10 E-value=2.6e-10 Score=132.98 Aligned_cols=183 Identities=11% Similarity=0.037 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCCh-hhHHHHHHHHHHh-CCc
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFP-EVISFRDNCISKL-GET 96 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~p-et~~~~~~~~~~~-gi~ 96 (967)
++..+++.++.|++. ...+++++++|||+||+|+++|+.+++. .++.++|+|+|...+ |..+.++.+++.+ |++
T Consensus 238 ~~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~G---~~v~~v~vd~g~~~~~e~~~~~~~~~~~l~gi~ 313 (556)
T 3uow_A 238 PIRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIFK---ERFFGIFIDNGLLRKNEAENVYTFLKSTFPDMN 313 (556)
T ss_dssp HHHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHHG---GGEEEEEEECSCSCTTHHHHHHHHHHHHCTTSE
T ss_pred cccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHhC---CeEEEEEEecCCCChHHHHHHHHHHHHhcCCCC
Confidence 556667777777766 3367899999999999999999998753 379999999998654 4555567899999 999
Q ss_pred EEEEecchhhhhcccccCCCC--cccchhhcHHHHHHHHHHcCC----cEEEEeccchhhHhhhcccccc--ccccCCCC
Q psy3751 97 LIVRSVEDSIMKGTVRLRKPN--TDSRNAAQSITLLETIKEFKF----DACIGGARRDEEKARAKERIFS--FRDKFGQW 168 (967)
Q Consensus 97 i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~G~R~des~~R~~~~~~~--~~~~~~~~ 168 (967)
++++.....++........|. +..|+......+.+.+++.+. +.+++|+..+|-.+.....-.. ........
T Consensus 314 ~~~vd~~~~f~~~l~g~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ies~~~~g~~~~iks~~n~~ 393 (556)
T 3uow_A 314 ITKIDASENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDIIESKCSKNLSDTIKTHHNVG 393 (556)
T ss_dssp EEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHHHHHSCC--------------
T ss_pred eEEeccHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHHHhhcccccccceeccccccc
Confidence 999998876655432221111 112222344556777777775 8999999998876554321000 00000000
Q ss_pred CCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 169 NPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 169 ~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
..| .......++||.+++++||+.|.++.|+|..-.+
T Consensus 394 ----gl~----------~~~~~~li~PL~~l~K~EVr~la~~lGlp~~~~~ 430 (556)
T 3uow_A 394 ----GLP----------KNLKFKLFEPFKYLFKDDVKTLSRELNLPEEITN 430 (556)
T ss_dssp -------------------CCCEEECTTTTCCHHHHHHHHHTTTCCHHHHH
T ss_pred ----ccc----------cccccceEeecccCcHHHHHHHHHHcCCCHHHhC
Confidence 000 0112347899999999999999999999966555
No 246
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.09 E-value=3.3e-10 Score=134.66 Aligned_cols=190 Identities=19% Similarity=0.174 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEE
Q psy3751 19 LDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLI 98 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~ 98 (967)
++..+++.++.|++.+.. +++++++|||+||+|+++|+.+++. +.++.++|+|+|.......+.++++++++|++++
T Consensus 223 ~~~~~~~~i~~Ir~~v~~-~~vvv~lSGGvDSsVla~Ll~~alG--~~~V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~ 299 (697)
T 2vxo_A 223 VQNRELECIREIKERVGT-SKVLVLLSGGVDSTVCTALLNRALN--QEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVK 299 (697)
T ss_dssp HHHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHSC--GGGEEEEEEECSCCCSSTTHHHHHHHHHTTCCEE
T ss_pred hhHHHHHHHHHHHHHhcc-cceEEEccCchHHHHHHHHHHHhcC--CceEEEEEeccccCCcchHHHHHHHHHHhCCcEE
Confidence 567777888888887753 7899999999999999999999853 1479999999998766677899999999999999
Q ss_pred EEecchhhhhcccccC-------------CCCcccchhh-cHH----HH----HHHHHHcCCc----EEEEeccchhhHh
Q psy3751 99 VRSVEDSIMKGTVRLR-------------KPNTDSRNAA-QSI----TL----LETIKEFKFD----ACIGGARRDEEKA 152 (967)
Q Consensus 99 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~----~~----~~~~~~~~~~----~~~~G~R~des~~ 152 (967)
++..+..+........ ...+..|... ++. .+ .+.+++.|.+ .+++|+..+|..+
T Consensus 300 vvdi~~~f~~~~~~l~~~~~~~~Y~~g~~~~l~~v~~~~~kR~iig~~~~~v~~~~A~~~g~~~~~~~LatG~~~~D~iE 379 (697)
T 2vxo_A 300 VINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLIE 379 (697)
T ss_dssp EEECHHHHHTCCCBCC----------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSCCSBC
T ss_pred EecchHHHHhhhhhhcccccccchhcccCcCcccccCHHHHHhHHHHHHHHHHHHHHHHcCCCcccEEEEEeccChhhhh
Confidence 9988776554221110 0112223221 121 12 4445677877 8999999987654
Q ss_pred hhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCCCCcc
Q psy3751 153 RAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219 (967)
Q Consensus 153 R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~~~lY 219 (967)
+....+..+....+.-......+.. + ......++||.+++++||++|.++.|+|..-.+
T Consensus 380 s~~~~l~~g~~~iks~~nv~g~~~~---~-----~~~~~~i~PL~~L~K~EVr~la~~lGlP~~i~~ 438 (697)
T 2vxo_A 380 SASLVASGKAELIKTHHNDTELIRK---L-----REEGKVIEPLKDFHKDEVRILGRELGLPEELVS 438 (697)
T ss_dssp CHHHHHHSCCCGGGSCCSSCHHHHH---H-----HHTTCEECGGGGSCHHHHHHHHHHTTCCHHHHT
T ss_pred hhhhhhhcCccccccccccchhhHH---h-----ccCCEEEEecccCCHHHHHHHHHHcCCCcceee
Confidence 4322111110000000000000000 0 001247899999999999999999999975444
No 247
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.05 E-value=2.5e-10 Score=125.05 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=54.1
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCC-
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPK- 403 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 403 (967)
++|+++|.+|+|||||+|+|++.... .+ ...+.|++.....+..++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~-----------v~----------------------~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE-----------AA----------------------NYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------------------------------------CCCCCCCCSSEEECCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc-----------cc----------------------CCCCceECceEEEEecCCc
Confidence 57999999999999999999973210 00 011223333222233332
Q ss_pred ----------------ceEEEeeChhhHHHHH-------HHHhhcccCCEEEEEEeCCC
Q psy3751 404 ----------------RKFIIADTPGHEQYTR-------NMITGASTADAVIILIDASK 439 (967)
Q Consensus 404 ----------------~~~~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvda~~ 439 (967)
..+.++||||..++.. ..+..++.+|++++|+|+++
T Consensus 50 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 50 RLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 4699999999765432 23445689999999999986
No 248
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.99 E-value=2.1e-09 Score=114.27 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=62.2
Q ss_pred ceEEEeeChhhHHHH------HHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHH-----HHHHHHHcCCCeEEEEEe
Q psy3751 404 RKFIIADTPGHEQYT------RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKR-----HSIIAHLLRIKHIIIAVN 472 (967)
Q Consensus 404 ~~~~liDtpG~~~~~------~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~-----~~~~~~~~~~~~iivviN 472 (967)
+.+.||||||..++. ..+...+.. +++++|+|+.. ........ ........+.+ +++|+|
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~-------~~~~~~~~~~~~~~~~~~~~~~~p-~~iv~N 179 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEI-------LKKPNDYCFVRFFALLIDLRLGAT-TIPALN 179 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGG-------CCSHHHHHHHHHHHHHHHHHHTSC-EEEEEC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhh-------hcCHHHHHHHHHHHHHHhcccCCC-eEEEEe
Confidence 579999999976653 223345566 89999999875 22222211 11122334666 789999
Q ss_pred cCCccCcCHHHHHHHHHH---HHH---------------------HHHHcCCccceEEeccccCCCccccc
Q psy3751 473 KMDLINYNQIFYKRIVYA---YKK---------------------FAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~---~~~---------------------~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|+|+....+ .+++.+. +.. +++.++. ..+++++||++|.|++++
T Consensus 180 K~D~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 180 KVDLLSEEE--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP-PVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp CGGGCCHHH--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC-CCCCEECCTTTCTTHHHH
T ss_pred ccccccccc--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC-cccceEEEecCcccHHHH
Confidence 999975321 1222211 111 1233332 237899999999999984
No 249
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.98 E-value=1e-09 Score=120.87 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=103.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCC-cEEEEecchhhhhcccc----
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGE-TLIVRSVEDSIMKGTVR---- 112 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi-~i~~~~~~~~~~~~~~~---- 112 (967)
++++|+||||.||+|++.++.+. +.++.++++|.|.. +.++.+++.|+++|+ +++++.....|+.....
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~----G~eViavt~d~Gq~--~Ele~A~~vA~~lGi~~~~VvDl~eef~~~v~~p~i~ 88 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEK----GFDVIAYVANVGQK--DDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALL 88 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEESSCC--CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHT
T ss_pred CCEEEEeCCcHHHHHHHHHHHHC----CCeEEEEEEEcCCH--HHHHHHHHHHHHcCCceEEEEecHHHHHHhhhhHHHh
Confidence 67899999999999999999887 56899999999974 567889999999999 99999887655432110
Q ss_pred cC--CCCccc-----chhhcHHHHHHHHHHcCCcEEEEeccchh-hHhhhccccccccccCCCCCCCCCCcccccccccc
Q psy3751 113 LR--KPNTDS-----RNAAQSITLLETIKEFKFDACIGGARRDE-EKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTR 184 (967)
Q Consensus 113 ~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~G~R~de-s~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 184 (967)
.. ...+.. |+.|....+.+.+++.|.+.+++|+.... ...|....+ ....
T Consensus 89 ~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf~~~~-~al~--------------------- 146 (421)
T 1vl2_A 89 GNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTY-AALN--------------------- 146 (421)
T ss_dssp TTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHH-HHHC---------------------
T ss_pred cCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHHHHHH-HhcC---------------------
Confidence 00 011111 33344455788888899999999999631 112322110 0000
Q ss_pred CCCCCceEEeeCCC-------CcHHHHHHHHHHcCCCCC
Q psy3751 185 VHPGENIRVFPISN-------WTELDIWQYIEREKIILP 216 (967)
Q Consensus 185 ~~~~~~~~i~Pl~~-------wt~~dV~~yi~~~~lp~~ 216 (967)
.....+.|+.+ ++++||.+|.+++|+|+.
T Consensus 147 ---p~~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~ 182 (421)
T 1vl2_A 147 ---PNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIK 182 (421)
T ss_dssp ---TTSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCC
T ss_pred ---CCCeEEcccCchhhccccCCHHHHHHHHHHcCCCcc
Confidence 01246789999 599999999999999985
No 250
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=1.8e-09 Score=121.14 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=77.9
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
.-.++|+++|..|+|||||++.|++...... +..+... +. ...+..+.....+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~--------------~~~~~~~------~~-----~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSP--------------EYPGPSH------RI-----KKTVQVEQSKVLIKE 83 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCC--------------CCCSCC----------------CCEEEEEECC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCC--------------CCCCccc------CC-----ccceeeeeEEEEEec
Confidence 3457899999999999999999987322100 0000000 00 000111111111222
Q ss_pred CC--ceEEEeeChhhHHHHH------HHH------------------h-hccc--CCEEEEEEeCC-CCCCCCCCCchhh
Q psy3751 402 PK--RKFIIADTPGHEQYTR------NMI------------------T-GAST--ADAVIILIDAS-KIKFNPSVNLLTQ 451 (967)
Q Consensus 402 ~~--~~~~liDtpG~~~~~~------~~~------------------~-~~~~--aD~~ilVvda~-~~~~~~~~g~~~~ 451 (967)
.+ ..++++||||...+.. .+. + .+.. +|++|++++++ . ++.+.
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~-------~L~~~ 156 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-------GLKPL 156 (418)
T ss_dssp ---CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC-------SCCHH
T ss_pred CCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc-------CCCHH
Confidence 22 3688999999765421 110 1 1222 45566766665 4 55555
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 452 TKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 452 t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
..+.+..+.. ++ ++|+|+||+|+... ......++.+...++..++ +++.+|+.++.|+.+
T Consensus 157 d~~~lk~L~~-~v-~iIlVinK~Dll~~--~ev~~~k~~i~~~~~~~~i---~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 157 DIEFMKRLHE-KV-NIIPLIAKADTLTP--EECQQFKKQIMKEIQEHKI---KIYEFPETDDEEENK 216 (418)
T ss_dssp HHHHHHHHTT-TS-EEEEEEESTTSSCH--HHHHHHHHHHHHHHHHHTC---CCCCCC---------
T ss_pred HHHHHHHHhc-cC-cEEEEEEcccCccH--HHHHHHHHHHHHHHHHcCC---eEEeCCCCCCcCHHH
Confidence 5445544432 44 49999999999853 3345555667777777665 789999999988875
No 251
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.92 E-value=8.9e-10 Score=121.62 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=28.6
Q ss_pred ceEEEeeChhhHHH-------HHHHHhhcccCCEEEEEEeCCC
Q psy3751 404 RKFIIADTPGHEQY-------TRNMITGASTADAVIILIDASK 439 (967)
Q Consensus 404 ~~~~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~ 439 (967)
..+.++||||..++ ....+..++.+|++++|+|+.+
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 46999999996542 3445666789999999999986
No 252
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.92 E-value=2.7e-09 Score=115.41 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=41.4
Q ss_pred CCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEe
Q psy3751 428 ADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIP 507 (967)
Q Consensus 428 aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~ 507 (967)
+++++++++.+.. ++.+...+.+..+. -++ ++++|+||.|+.... .....++++.++++..++ ++++
T Consensus 127 a~~ll~ldePt~~------~Ld~~~~~~l~~l~-~~~-~iilV~~K~Dl~~~~--e~~~~~~~~~~~~~~~~~---~~~e 193 (301)
T 2qnr_A 127 VHCCFYFISPFGH------GLKPLDVAFMKAIH-NKV-NIVPVIAKADTLTLK--ERERLKKRILDEIEEHNI---KIYH 193 (301)
T ss_dssp CCEEEEEECSSSS------SCCHHHHHHHHHHT-TTS-CEEEEECCGGGSCHH--HHHHHHHHHHHHHHHTTC---CCCC
T ss_pred hhheeeeecCccc------CCCHHHHHHHHHHH-hcC-CEEEEEEeCCCCCHH--HHHHHHHHHHHHHHHcCC---eEEe
Confidence 4556666665441 34444443333222 123 489999999998532 233345566677777765 8899
Q ss_pred ccccCCCccccc
Q psy3751 508 ISALNGDNIISA 519 (967)
Q Consensus 508 iSa~~g~gi~~l 519 (967)
+||++| |++++
T Consensus 194 ~Sa~~~-~v~e~ 204 (301)
T 2qnr_A 194 LPDAES-DEDED 204 (301)
T ss_dssp CC----------
T ss_pred cCCccc-cccHH
Confidence 999999 99885
No 253
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.91 E-value=2.1e-09 Score=118.06 Aligned_cols=106 Identities=18% Similarity=0.101 Sum_probs=59.5
Q ss_pred ecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc
Q psy3751 400 NTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY 479 (967)
Q Consensus 400 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~ 479 (967)
+..+..+.|+||||..+--. .....+|++++|+|+..+.. ...+.... . ..+ .++++||+|+...
T Consensus 144 ~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~--~~~i~~~i------~---~~~-~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 144 EAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE--LQGIKKGI------F---ELA-DMIAVNKADDGDG 208 (337)
T ss_dssp HHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH------H---HHC-SEEEEECCSTTCC
T ss_pred hcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc--HHHHHHHH------h---ccc-cEEEEEchhccCc
Confidence 34678999999999543111 12368999999999865110 00011110 0 123 4666799997642
Q ss_pred CHHHHHHHHHHHHHHHHHcCC----ccceEEeccccCCCccccccc
Q psy3751 480 NQIFYKRIVYAYKKFAEDIHF----QNINTIPISALNGDNIISASN 521 (967)
Q Consensus 480 ~~~~~~~i~~~~~~~~~~~~~----~~~~ii~iSa~~g~gi~~l~~ 521 (967)
.+ ......+.+...+..+.. ...+++++||++|.|++++.+
T Consensus 209 ~~-~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 209 ER-RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWS 253 (337)
T ss_dssp HH-HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHH
T ss_pred hh-HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 22 122223333333322221 035789999999999998543
No 254
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.77 E-value=4e-08 Score=86.16 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=57.7
Q ss_pred eEEEEEEEeeeecCCCEEEEecCC-cEEEEEEEEeCccccceeecCCeEEEEEcccc-CCCCCccccc
Q psy3751 568 RGYMGRIESGIIKKNDCLIVEPSG-KKATIKDIQMLNKSLDMAITGQSVTLIIKEYL-DISRGNMLVS 633 (967)
Q Consensus 568 ~v~~G~v~~G~l~~g~~v~i~p~~-~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~-~i~~G~vl~~ 633 (967)
.++.|+|++|+|++|+.| |++ ...+|+||+++++++++|.+||+|++++++.. ++++||+|-.
T Consensus 49 pvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~~I~~GdVLyv 113 (116)
T 1xe1_A 49 DVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIGKVKKGDVLEI 113 (116)
T ss_dssp EEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCCCCCTTCEEEE
T ss_pred CeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCccccCCCcEEEE
Confidence 688999999999999999 888 78999999999999999999999999998743 8999999854
No 255
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.73 E-value=4.8e-09 Score=108.81 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=53.7
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF 483 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 483 (967)
..+.++|++|.-.. . ...-...+..+.|+|+..+. ...... ...++.+ .++|+||+|+.+..+..
T Consensus 119 ~d~~~id~~g~i~~-~--~s~~~~~~~~~~v~~~~~~~-----~~~~~~------~~~~~~~-~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 119 IDLLFIENVGNLIC-P--ADFDLGTHKRIVVISTTEGD-----DTIEKH------PGIMKTA-DLIVINKIDLADAVGAD 183 (226)
T ss_dssp CSEEEEECCSCSSG-G--GGCCCSCSEEEEEEEGGGCT-----TTTTTC------HHHHTTC-SEEEEECGGGHHHHTCC
T ss_pred CCEEEEeCCCCccC-c--chhhhccCcEEEEEecCcch-----hhHhhh------hhHhhcC-CEEEEeccccCchhHHH
Confidence 47889999993110 0 01113457778889875411 010000 1113445 78899999987421111
Q ss_pred HHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 484 YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 484 ~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.++ +...++.++. ..+++++||++|.|++++
T Consensus 184 ~~~----~~~~~~~~~~-~~~~~~~Sa~~g~gv~~l 214 (226)
T 2hf9_A 184 IKK----MENDAKRINP-DAEVVLLSLKTMEGFDKV 214 (226)
T ss_dssp HHH----HHHHHHHHCT-TSEEEECCTTTCTTHHHH
T ss_pred HHH----HHHHHHHhCC-CCeEEEEEecCCCCHHHH
Confidence 222 3333333331 358999999999999984
No 256
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.67 E-value=4.3e-08 Score=112.27 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=42.0
Q ss_pred CCceEEEeeChhhH----HHHHHHHhh--cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 402 PKRKFIIADTPGHE----QYTRNMITG--ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 402 ~~~~~~liDtpG~~----~~~~~~~~~--~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
.++.++||||||.. .+...+... +..+|.+++|+|+.. +.. ..+.+...... ++-.++|+||+|
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~-------g~~--~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI-------GQA--CEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC-------CTT--HHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc-------ccc--HHHHHHHHHhh-cCceEEEEeCCc
Confidence 67789999999953 344333222 237899999999988 422 22222222211 331277899999
Q ss_pred ccCc
Q psy3751 476 LINY 479 (967)
Q Consensus 476 ~~~~ 479 (967)
....
T Consensus 252 ~~~~ 255 (504)
T 2j37_W 252 GHAK 255 (504)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8753
No 257
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.62 E-value=3.2e-08 Score=104.14 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCC-------CCCCeeEEEeeCCCCChhhHHHHHHH
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRP-------SRFPFPMVHIDTGHNFPEVISFRDNC 89 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~-------~~~~i~~v~idtg~~~pet~~~~~~~ 89 (967)
.+..++...+.|+.+++.. ++++|++|||.||++++.++.++... .+.++.+++++.+. .+..+.++++
T Consensus 20 ~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~--~~~~~~A~~~ 97 (279)
T 3q4g_A 20 PQFEIERRVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGE--QKDEDEAQLA 97 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSS--CSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCC--hHHHHHHHHH
Confidence 3445556667777776654 68999999999999999997766321 13467888888553 4467889999
Q ss_pred HHHhCC-cEEEEecchhhhhc-------cccc-----CC--CCcccc---hhhcHHHHHHHHHHcCCcEEEEeccchhhH
Q psy3751 90 ISKLGE-TLIVRSVEDSIMKG-------TVRL-----RK--PNTDSR---NAAQSITLLETIKEFKFDACIGGARRDEEK 151 (967)
Q Consensus 90 ~~~~gi-~i~~~~~~~~~~~~-------~~~~-----~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~R~des~ 151 (967)
++.+|+ +++++..++.+... +... +. .++..| .++|...++..+.++|.-++-|| +.+|..
T Consensus 98 a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTg-n~sE~~ 176 (279)
T 3q4g_A 98 LSFIRPTHSVSVNIKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTD-HSAENI 176 (279)
T ss_dssp HHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCC-CHHHHH
T ss_pred HHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCc-cHHhhh
Confidence 999999 88888776544321 1111 11 111123 34566668888888786333334 445543
Q ss_pred hhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 152 ARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 152 ~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
-. +...++. +..-++||.+.++.||++.+++.|+|
T Consensus 177 ~G-------y~TkyGD---------------------~~~di~Pl~dl~Kt~Vr~LA~~lgiP 211 (279)
T 3q4g_A 177 TG-------FYTKFGD---------------------GACDLAPLFGLNKRQVRLLAKTLGAP 211 (279)
T ss_dssp HT-------CSCTTTT---------------------TCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred cc-------chhhcCC---------------------cccceeecCCCcHHHHHHHHHHhCCc
Confidence 11 1111110 01247899999999999999999986
No 258
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.61 E-value=3.9e-08 Score=103.97 Aligned_cols=166 Identities=12% Similarity=0.087 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHcCC---CcEEEEecChhHHHHHHHHHHhcCC-------CCCCeeEEEeeCCCCChhhHHHHHH
Q psy3751 19 LDWLESEAIHIMREVSAECN---NPVLLFSGGKDSVVLLRLAEKAFRP-------SRFPFPMVHIDTGHNFPEVISFRDN 88 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~~---~i~va~SGGKDS~vlL~l~~~~~~~-------~~~~i~~v~idtg~~~pet~~~~~~ 88 (967)
.+..+......|+.+++..+ +++|++|||.||++++.|+.++... .+.++.+++++.+. +...+.+++
T Consensus 19 ~~~~i~~~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~--~~~~~dA~~ 96 (275)
T 1wxi_A 19 AEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGV--QADEQDCQD 96 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSS--CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCC--ccCHHHHHH
Confidence 44555566778888877644 8999999999999999999887521 12367888888653 346888999
Q ss_pred HHHHhCC-cEEEEecchhhhhcc---cccCCC--Ccccch---hhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccc
Q psy3751 89 CISKLGE-TLIVRSVEDSIMKGT---VRLRKP--NTDSRN---AAQSITLLETIKEFKFDACIGGARRDEEKARAKERIF 159 (967)
Q Consensus 89 ~~~~~gi-~i~~~~~~~~~~~~~---~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~ 159 (967)
+++.+|+ +++++.....+.... ...+.+ ++..|+ ++|...+...+.+.|..++.||+. +|... . .+
T Consensus 97 va~~lgi~~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTgn~-~E~~~--G--y~ 171 (275)
T 1wxi_A 97 AIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHA-AEAIT--G--FF 171 (275)
T ss_dssp HHHHHCCSEEEECCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHTT--T--CS
T ss_pred HHHHcCCCeEEEEecHHHHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECccH-HHHcc--C--cc
Confidence 9999999 888886654332211 111111 111222 233445666777777766666654 33310 0 00
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCC
Q psy3751 160 SFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIIL 215 (967)
Q Consensus 160 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~ 215 (967)
..++. ...-++||.++++.||+...++.|+|.
T Consensus 172 ---t~~gd---------------------~~~~~~PL~~l~K~eVr~la~~lglp~ 203 (275)
T 1wxi_A 172 ---TKYGD---------------------GGTDINPLYRLNKRQGKQLLAALACPE 203 (275)
T ss_dssp ---CTTTT---------------------TCCSBCTTTTCCHHHHHHHHHHTTCCG
T ss_pred ---cccCC---------------------CccceeeccCCCHHHHHHHHHHhCCcH
Confidence 00000 012378999999999999999999973
No 259
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.60 E-value=1.3e-07 Score=111.91 Aligned_cols=165 Identities=15% Similarity=0.065 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhC
Q psy3751 17 LYLDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLG 94 (967)
Q Consensus 17 ~~l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~g 94 (967)
...++..+.....|++.++.. ++++|++|||.||++++.|+.++++ ..++.+++++++...+.+.+.++++++.+|
T Consensus 304 ~~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG--~~~v~~v~m~~~~~~~~~~~~A~~la~~lg 381 (590)
T 3n05_A 304 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--AQNVYGVSMPSKYSSDHSKGDAAELARRTG 381 (590)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHC--GGGEEEEECCCSSCCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhC--cccEEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 346677777778888877765 6899999999999999999998754 147899999998878889999999999999
Q ss_pred CcEEEEecchhhhhcccccCCCC---cccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCC
Q psy3751 95 ETLIVRSVEDSIMKGTVRLRKPN---TDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPK 171 (967)
Q Consensus 95 i~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~ 171 (967)
++++++.....+........... ...+.+++...+...+.+.|..++.|| +.+|...-. ...++.
T Consensus 382 i~~~~i~i~~~~~~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy-------~t~~gd---- 449 (590)
T 3n05_A 382 LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVGY-------STLYGD---- 449 (590)
T ss_dssp CEEEECCSHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHTC-------CCSSCT----
T ss_pred CcEEEEEChHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcCc-------hhhcCC----
Confidence 99999877665433221111111 112234556667788888899999999 666654211 111000
Q ss_pred CCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcC
Q psy3751 172 SQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREK 212 (967)
Q Consensus 172 ~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~ 212 (967)
....++||.++++.||+...++.|
T Consensus 450 -----------------~~~~~~Pl~~l~K~eVr~la~~lg 473 (590)
T 3n05_A 450 -----------------SVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
T ss_dssp -----------------TSCSBCTTTTSCHHHHHHHHHHHH
T ss_pred -----------------CccceeecCCCcHHHHHHHHHHhC
Confidence 012367999999999999999887
No 260
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=98.57 E-value=6.5e-08 Score=102.32 Aligned_cols=166 Identities=13% Similarity=0.063 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCC---C--CCeeEEEeeCCCCChhhHHHHHHHHH
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPS---R--FPFPMVHIDTGHNFPEVISFRDNCIS 91 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~---~--~~i~~v~idtg~~~pet~~~~~~~~~ 91 (967)
.+..+++....|+.+++.. .+++|++|||.||++++.|+.++.... + .++.+++++.+.. ...+.++++++
T Consensus 18 ~~~~i~~~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~~~~--~d~~~A~~va~ 95 (271)
T 1kqp_A 18 PKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQ--QDEDDAQLALK 95 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSSC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCCCCC--CCHHHHHHHHH
Confidence 3444555667777776543 678999999999999999998875210 1 3677888876533 35788999999
Q ss_pred HhCC-cEEEEecchhhhhcc---ccc-CCCC--cccch---hhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccc
Q psy3751 92 KLGE-TLIVRSVEDSIMKGT---VRL-RKPN--TDSRN---AAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSF 161 (967)
Q Consensus 92 ~~gi-~i~~~~~~~~~~~~~---~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~ 161 (967)
.+|+ +++++.....+.... ... +.+. +..|+ ++|...+...+.+.+..++.||+. +|... ..
T Consensus 96 ~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvl~tgn~-~E~~~--Gy----- 167 (271)
T 1kqp_A 96 FIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA-AEAVT--GF----- 167 (271)
T ss_dssp HHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH-HHHTT--TC-----
T ss_pred hcCCCeEEEeccHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCCEEEECccH-HHhcc--CC-----
Confidence 9999 888876654332211 010 2221 11222 244455667777778766555554 54411 00
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCCC
Q psy3751 162 RDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIIL 215 (967)
Q Consensus 162 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp~ 215 (967)
...++. ...-++||.++++.||+...++.|+|-
T Consensus 168 ~t~~gd---------------------~~~~~~Pl~~l~K~eVr~la~~lglp~ 200 (271)
T 1kqp_A 168 FTKYGD---------------------GGADLLPLTGLTKRQGRTLLKELGAPE 200 (271)
T ss_dssp SCTTTT---------------------TCCSBCTTTTCCHHHHHHHHHHTTCCT
T ss_pred cccccc---------------------ccccccccccCCHHHHHHHHHHcCCCH
Confidence 000000 012378999999999999999999973
No 261
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.56 E-value=2.1e-07 Score=103.67 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=38.5
Q ss_pred EEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEecc
Q psy3751 430 AVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPIS 509 (967)
Q Consensus 430 ~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iS 509 (967)
+++||+|+.. +......+.+..+. .+ .++|+|+||+|.... ......+..+..-++.. .++++.+|
T Consensus 151 ~v~fI~d~~~-------~l~~~Dieilk~L~-~~-~~vI~Vi~KtD~Lt~--~E~~~l~~~I~~~L~~~---gi~I~~is 216 (427)
T 2qag_B 151 CLYFIAPTGH-------SLKSLDLVTMKKLD-SK-VNIIPIIAKADAISK--SELTKFKIKITSELVSN---GVQIYQFP 216 (427)
T ss_dssp EEEEECCCC----------CHHHHHHHHHTC-SC-SEEEEEESCGGGSCH--HHHHHHHHHHHHHHBTT---BCCCCCCC
T ss_pred EEEEEeCCCC-------CCCHHHHHHHHHHh-hC-CCEEEEEcchhccch--HHHHHHHHHHHHHHHHc---CCcEEecC
Confidence 4666778776 66555555444433 23 459999999999853 23444555555434333 45778888
Q ss_pred c
Q psy3751 510 A 510 (967)
Q Consensus 510 a 510 (967)
.
T Consensus 217 ~ 217 (427)
T 2qag_B 217 T 217 (427)
T ss_dssp -
T ss_pred C
Confidence 4
No 262
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.55 E-value=8.1e-08 Score=100.97 Aligned_cols=165 Identities=13% Similarity=-0.011 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhc---CCCCC--CeeEEEeeCCCCChhhHHHHHHHHH
Q psy3751 19 LDWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAF---RPSRF--PFPMVHIDTGHNFPEVISFRDNCIS 91 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~---~~~~~--~i~~v~idtg~~~pet~~~~~~~~~ 91 (967)
.+..+++....|+.+++.. ++++|++|||.||+++++|+.++. +..+. ++.++++..+ .+...+.++++++
T Consensus 26 ~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~--~~~~~~dA~~~a~ 103 (285)
T 3dpi_A 26 ARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYG--AQHDEADARRALA 103 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSC--C---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCC--CHHHHHHHHHHHH
Confidence 3555667778888777654 789999999999999998877653 21122 3455555533 3456678899999
Q ss_pred HhC-CcEEEEecchhhhhc---ccccCCC-------Ccccc---hhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccc
Q psy3751 92 KLG-ETLIVRSVEDSIMKG---TVRLRKP-------NTDSR---NAAQSITLLETIKEFKFDACIGGARRDEEKARAKER 157 (967)
Q Consensus 92 ~~g-i~i~~~~~~~~~~~~---~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~ 157 (967)
.+| ++++++...+.+... ....+.+ ++..| .++|...+...+.++|.-++-||+ ++|..-...
T Consensus 104 ~lg~i~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn-~sE~~~Gy~-- 180 (285)
T 3dpi_A 104 FVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDH-AAESVMGFF-- 180 (285)
T ss_dssp HHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHHHHHH--
T ss_pred HcCCCcEEEEEChHHHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCcc-HHhhhCCcc--
Confidence 999 799988776543321 1111111 11223 345666677888887764444444 444321111
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHcCCC
Q psy3751 158 IFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 158 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
...++. ..-++||.++++.||+...++.|+|
T Consensus 181 T~~GD~--------------------------~~~~~Pl~~l~K~eV~~la~~lg~p 211 (285)
T 3dpi_A 181 TKFGDG--------------------------GADVLPLAGLTKRRVRALARMLGAD 211 (285)
T ss_dssp HCCCCC--------------------------CCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred cccCCC--------------------------ceeEeeecCCcHHHHHHHHHHcCCC
Confidence 001111 1247899999999999999999986
No 263
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.53 E-value=4.9e-09 Score=116.65 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=81.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
.+|+++|.+|+|||||+|+|++... +.+ +........|.|.+.....+ + .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~-----------------~~~----------~~~~~~~~~gtT~~~~~~~~--~-~ 212 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEAT-----------------GKG----------NVITTSYFPGTTLDMIEIPL--E-S 212 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHH-----------------HTT----------CCCEEEECTTSSCEEEEEEC--S-T
T ss_pred CcEEEEcCCCCchHHHHHHHHhhcc-----------------CCc----------cceeecCCCCeEEeeEEEEe--C-C
Confidence 3699999999999999999997210 000 00011122455555443332 2 2
Q ss_pred eEEEeeChhhHH------HH-HHHHhhc---ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 405 KFIIADTPGHEQ------YT-RNMITGA---STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 405 ~~~liDtpG~~~------~~-~~~~~~~---~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
.+.++||||..+ ++ ...+..+ ...|.+++++++.+..|..+... +..+...+. ++++++||+
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~-~~~~v~~k~ 284 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRR-SFVCYMANE 284 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSE-EEEEEECTT
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCc-eEEEEecCC
Confidence 489999999321 11 1112222 67899999999965222111111 111112233 489999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
|.....+ +.+....+.+.+|. .+.|.++.+..++.+
T Consensus 285 d~~~~~~-----~~~~~~~~~~~~g~---~l~p~~~~~~~~~~~ 320 (369)
T 3ec1_A 285 LTVHRTK-----LEKADSLYANQLGE---LLSPPSKRYAAEFPP 320 (369)
T ss_dssp SCEEEEE-----GGGHHHHHHHHBTT---TBCSSCGGGTTTCCC
T ss_pred ccccccc-----HHHHHHHHHHhcCC---ccCCCCchhhhhccC
Confidence 9875322 11222334445564 667777776666554
No 264
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.48 E-value=9.5e-08 Score=105.58 Aligned_cols=85 Identities=20% Similarity=0.169 Sum_probs=49.5
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
....+|+++|.+|+|||||+|+|++..- ..+ ...+.|++.....+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-----------~~~----------------------~~p~tTi~p~~g~v~v 66 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-----------SAE----------------------NFPFCTIDPNESRVPV 66 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC----------------------------------------------CCSEEEEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-----------ccc----------------------CCCccccCceeEEEEE
Confidence 3457899999999999999999997211 001 1112233322222222
Q ss_pred C-----------------CceEEEeeChhhHHHHH-------HHHhhcccCCEEEEEEeCCC
Q psy3751 402 P-----------------KRKFIIADTPGHEQYTR-------NMITGASTADAVIILIDASK 439 (967)
Q Consensus 402 ~-----------------~~~~~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvda~~ 439 (967)
+ ...+.++||||...+.. ..+..++.+|++++|+|+.+
T Consensus 67 ~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 67 PDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 23589999999766443 45667789999999999976
No 265
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.48 E-value=1.7e-07 Score=101.29 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=79.1
Q ss_pred eeEeeceeeeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC-C--C-CCCCchhhHHHHHHHHHH---c
Q psy3751 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK-F--N-PSVNLLTQTKRHSIIAHL---L 462 (967)
Q Consensus 390 ~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~-~--~-~~~g~~~~t~~~~~~~~~---~ 462 (967)
.|+.+....+..++..+.+|||+|++.|...+...++.++++|+|+|.++.. . + ....-.......+..... +
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 3444445556677788999999999999999999999999999999876310 0 0 011112222222222221 2
Q ss_pred CCCeEEEEEecCCccCcC----------------HHHHHHHHHHHHHHHHHcC---CccceEEeccccCCCccccc
Q psy3751 463 RIKHIIIAVNKMDLINYN----------------QIFYKRIVYAYKKFAEDIH---FQNINTIPISALNGDNIISA 519 (967)
Q Consensus 463 ~~~~iivviNK~D~~~~~----------------~~~~~~i~~~~~~~~~~~~---~~~~~ii~iSa~~g~gi~~l 519 (967)
.-.++|++.||+|+.+.. ....++..+-+......+. -..+.+..+||+++.||...
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~v 308 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV 308 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHH
Confidence 234599999999986311 0112333333332222221 12457788999999999874
No 266
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.45 E-value=1.1e-08 Score=113.80 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=79.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeecCCc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKR 404 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 404 (967)
.+|+++|.+|+|||||+|+|++.... .+. +........|.|.+.....+ ++
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~-----------------~~~---------~~~~~~~~~gtT~~~~~~~~--~~- 211 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSD-----------------ETE---------NVITTSHFPGTTLDLIDIPL--DE- 211 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTT-----------------SCS---------SCCEEECCC----CEEEEES--SS-
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcc-----------------ccc---------cceecCCCCCeecceEEEEe--cC-
Confidence 36999999999999999999972100 000 00011122455655443332 22
Q ss_pred eEEEeeChhhH------H-HHHHHHhh---cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecC
Q psy3751 405 KFIIADTPGHE------Q-YTRNMITG---ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474 (967)
Q Consensus 405 ~~~liDtpG~~------~-~~~~~~~~---~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~ 474 (967)
.+.++||||.. + .....+.. ....+.+++++|+....+..+..... .+...+. ++++++||+
T Consensus 212 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d-------~l~~~~~-~~~~v~nk~ 283 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFD-------YVSGGRR-AFTCHFSNR 283 (368)
T ss_dssp SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEE-------EEESSSE-EEEEEECTT
T ss_pred CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEE-------EecCCCc-eEEEEecCc
Confidence 38999999932 1 11222222 36789999999986522221111111 1112233 489999999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
|.....+ ..+....+.+.+|. .+.|.++.++.++.+
T Consensus 284 d~~~~~~-----~~~~~~~~~~~~g~---~l~p~~~~~~~~~~~ 319 (368)
T 3h2y_A 284 LTIHRTK-----LEKADELYKNHAGD---LLSPPTPEELENMPE 319 (368)
T ss_dssp SCEEEEE-----HHHHHHHHHHHBTT---TBCSSCHHHHHTSCC
T ss_pred ccccccc-----HHHHHHHHHHHhCC---ccCCCchhhHhhccC
Confidence 9886432 22223334455664 567777765555544
No 267
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.43 E-value=6e-07 Score=97.34 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=59.5
Q ss_pred eeEeeceeeeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC---CCC-CCCchhhHHHHHHHHHH---c
Q psy3751 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK---FNP-SVNLLTQTKRHSIIAHL---L 462 (967)
Q Consensus 390 ~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~---~~~-~~g~~~~t~~~~~~~~~---~ 462 (967)
.|+.+....+..++..+.+|||+|++.|...+...++.++++|+|+|.++.. .+. ...-.......+..... +
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3444555566777888999999999999999999999999999999998310 000 11122223333322221 2
Q ss_pred CCCeEEEEEecCCccC
Q psy3751 463 RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 463 ~~~~iivviNK~D~~~ 478 (967)
.-.++|++.||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 2345999999999863
No 268
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.43 E-value=1.5e-06 Score=92.03 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=45.2
Q ss_pred ccCCEEEEEEeCC-CCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCC
Q psy3751 426 STADAVIILIDAS-KIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF 500 (967)
Q Consensus 426 ~~aD~~ilVvda~-~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~ 500 (967)
..++++++++|.. + +..+...+.+..+... ..+|+|+||+|.... ......+..++..++..+.
T Consensus 110 aRal~~lllldep~~-------gL~~lD~~~l~~L~~~--~~vI~Vi~K~D~lt~--~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 110 TRVHCCLYFISPTGH-------SLRPLDLEFMKHLSKV--VNIIPVIAKADTMTL--EEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp CSCCEEEEEECCCSS-------SCCHHHHHHHHHHHTT--SEEEEEETTGGGSCH--HHHHHHHHHHHHHHHHTTC
T ss_pred heeeeeeEEEecCCC-------cCCHHHHHHHHHHHhc--CcEEEEEeccccCCH--HHHHHHHHHHHHHHHHcCc
Confidence 3478999999965 4 6777777777666654 459999999999853 3345566666666666664
No 269
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=98.37 E-value=3.3e-07 Score=98.49 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=86.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHh-------CCcEEEEe-cchhhhhc
Q psy3751 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKL-------GETLIVRS-VEDSIMKG 109 (967)
Q Consensus 38 ~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~-------gi~i~~~~-~~~~~~~~ 109 (967)
+++++++|| .||+|+++++.+. +.++.++|++++ +...+.++++|+.+ +++++++. ....+
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~----G~~v~~v~~~~~---~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~~~~--- 248 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKR----GVEVIPVYIGKD---DKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDRVL--- 248 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHB----TCEEEEEEESCS---SHHHHHHHHHHHHHHTTCTTSCCCCEEESSHHHHH---
T ss_pred CcEEEEEeC-CcHHHHHHHHHhC----CCeEEEEEEEEC---HHHHHHHHHHHHHHhhhccCCCCcEEEeCCCHHHH---
Confidence 467899999 9999999999987 678999999944 34567788888888 67777664 22111
Q ss_pred ccccCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhh-HhhhccccccccccCCCCCCCCCCccccccccccCCCC
Q psy3751 110 TVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEE-KARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPG 188 (967)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des-~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 188 (967)
+.+.+.|++.++|||..+|. .++..+.... .. .
T Consensus 249 ---------------------~~A~~~ga~~I~tG~~~~~~~~qt~~l~~~~--~~-----------------------~ 282 (307)
T 1vbk_A 249 ---------------------KLIRDFGVKGVIKGLRPNDLNSEVSEITEDF--KM-----------------------F 282 (307)
T ss_dssp ---------------------HHHHHHTCCEEECCCCGGGCCTTCHHHHHHH--HH-----------------------C
T ss_pred ---------------------HHHHHcCCCEEEECcccchhccccHHHhhhc--cC-----------------------c
Confidence 67777899999999997653 1222111111 00 0
Q ss_pred CceEEeeCCCCcHHHHHHHHHHcCC
Q psy3751 189 ENIRVFPISNWTELDIWQYIEREKI 213 (967)
Q Consensus 189 ~~~~i~Pl~~wt~~dV~~yi~~~~l 213 (967)
....++||..|++.||.++.++.|+
T Consensus 283 ~~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 283 PVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp SSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred CCeEEEccCCCCHHHHHHHHHHcCC
Confidence 1246899999999999999998875
No 270
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.33 E-value=2.3e-06 Score=96.50 Aligned_cols=67 Identities=24% Similarity=0.284 Sum_probs=42.4
Q ss_pred CCceEEEeeChhhH----HHHHHH--HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCC-CeEEEEEecC
Q psy3751 402 PKRKFIIADTPGHE----QYTRNM--ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKM 474 (967)
Q Consensus 402 ~~~~~~liDtpG~~----~~~~~~--~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~-~~iivviNK~ 474 (967)
.++.+.||||||.. .+...+ +..+..+|.+++|+|+.. +. .....+.... .++ +...+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~-------g~--~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTI-------GQ--QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGG-------GG--GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccc-------cH--HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 56789999999943 234333 223347999999999987 42 2222222221 234 4478899999
Q ss_pred CccC
Q psy3751 475 DLIN 478 (967)
Q Consensus 475 D~~~ 478 (967)
|...
T Consensus 249 D~~~ 252 (432)
T 2v3c_C 249 DGSA 252 (432)
T ss_dssp SSCS
T ss_pred CCcc
Confidence 9864
No 271
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.29 E-value=4.3e-06 Score=93.35 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=83.6
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhc----cCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceee
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFD----SKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRY 398 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 398 (967)
....++++|++|||||||+|.|++. .|.+ . .+.....+ .++ .
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI----------------------~----~~g~~~t~-~~~-------v 113 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAA----------------------K----TGVVEVTM-ERH-------P 113 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSC----------------------C----CCC----C-CCE-------E
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceE----------------------E----ECCeecce-eEE-------e
Confidence 3357999999999999999999982 2221 0 11111111 121 1
Q ss_pred eecC-CceEEEeeChhhHH---HHHHHHh--hcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEe
Q psy3751 399 FNTP-KRKFIIADTPGHEQ---YTRNMIT--GASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVN 472 (967)
Q Consensus 399 ~~~~-~~~~~liDtpG~~~---~~~~~~~--~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviN 472 (967)
+... ...++++|+||... -....+. ++...|..++ ++... .+.|....+..+...+.+ +++|+|
T Consensus 114 ~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~--------~~kqrv~la~aL~~~~~p-~~lV~t 183 (413)
T 1tq4_A 114 YKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR--------FKKNDIDIAKAISMMKKE-FYFVRT 183 (413)
T ss_dssp EECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC--------CCHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred ccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC--------ccHHHHHHHHHHHhcCCC-eEEEEe
Confidence 2222 23689999999421 1222222 3444566555 67642 234544444555555654 999999
Q ss_pred cCCccCc-------CHHHHHHHHHHHHHHH----HHcCCccceEEeccc--cCCCccccc
Q psy3751 473 KMDLINY-------NQIFYKRIVYAYKKFA----EDIHFQNINTIPISA--LNGDNIISA 519 (967)
Q Consensus 473 K~D~~~~-------~~~~~~~i~~~~~~~~----~~~~~~~~~ii~iSa--~~g~gi~~l 519 (967)
|.|+.-- +....+++.+.++++. ++.|.+...+|++|+ .++.|++++
T Consensus 184 kpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L 243 (413)
T 1tq4_A 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVL 243 (413)
T ss_dssp CHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHH
T ss_pred cCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHH
Confidence 9996511 1001123344444443 333433347899999 666678874
No 272
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.21 E-value=8e-06 Score=91.51 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCceEEEeeChhh----HHHHHHH--HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 402 PKRKFIIADTPGH----EQYTRNM--ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 402 ~~~~~~liDtpG~----~~~~~~~--~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
.++.+.||||||. ......+ +..+..+|.++||+||.. |. +....+.... -.++...||+||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~-------gq--~a~~~a~~f~-~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTI-------GQ--QAYNQALAFK-EATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-------GG--GHHHHHHHHH-HSCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCC-------ch--hHHHHHHHHH-hhCCCeEEEEECCC
Confidence 4578999999992 2233322 223456899999999987 32 1222222222 12343568899999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASN 521 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~ 521 (967)
....... ...+....+. |+.+++. |++++++..
T Consensus 251 ~~~~gG~--------~ls~~~~~g~---PI~fig~--Ge~vddL~~ 283 (443)
T 3dm5_A 251 GSAKGGG--------ALSAVAATGA---PIKFIGT--GEKIDDIEP 283 (443)
T ss_dssp SCSSHHH--------HHHHHHTTCC---CEEEEEC--SSSTTCEEE
T ss_pred CcccccH--------HHHHHHHHCC---CEEEEEc--CCChHHhhh
Confidence 8753221 1123334444 7777774 999987653
No 273
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.16 E-value=2.4e-06 Score=92.20 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=68.4
Q ss_pred ceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHH
Q psy3751 404 RKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF 483 (967)
Q Consensus 404 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 483 (967)
..+.+||| +++|..-....++.+|++|+|+|++++.+ ........+..+...+++ +|+|+||+|+.+..+
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~-----s~~~l~~~l~~~~~~~~p-iilv~NK~DL~~~~~-- 132 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET-----STYIIDKFLVLAEKNELE-TVMVINKMDLYDEDD-- 132 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC-----CHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHH--
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC-----CHHHHHHHHHHHHHCCCC-EEEEEeHHHcCCchh--
Confidence 37899999 77776666677899999999999997321 112233334444445655 889999999985321
Q ss_pred HHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 484 YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 484 ~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
. ++.+++++.++.. .+++++||++|.|++++
T Consensus 133 v----~~~~~~~~~~~~~-~~~~~~SAktg~gv~~l 163 (301)
T 1u0l_A 133 L----RKVRELEEIYSGL-YPIVKTSAKTGMGIEEL 163 (301)
T ss_dssp H----HHHHHHHHHHTTT-SCEEECCTTTCTTHHHH
T ss_pred H----HHHHHHHHHHhhh-CcEEEEECCCCcCHHHH
Confidence 1 2233444444411 48999999999999984
No 274
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.16 E-value=9.4e-07 Score=97.07 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=80.3
Q ss_pred eeEeeceeeeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC---CCC-CCCchhhHHHHHHHHHH---c
Q psy3751 390 ITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK---FNP-SVNLLTQTKRHSIIAHL---L 462 (967)
Q Consensus 390 ~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~---~~~-~~g~~~~t~~~~~~~~~---~ 462 (967)
.|+.+....+..++..+.+|||+|++.|...+...+..+|++|+|+|.++.. .|. ...-.......+..... +
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3444444556677888999999999999999999999999999999998721 000 00112223333322221 2
Q ss_pred CCCeEEEEEecCCccCcC---------------HHHHHHHHHHHHHHHHHcC----CccceEEeccccCCCccccc
Q psy3751 463 RIKHIIIAVNKMDLINYN---------------QIFYKRIVYAYKKFAEDIH----FQNINTIPISALNGDNIISA 519 (967)
Q Consensus 463 ~~~~iivviNK~D~~~~~---------------~~~~~~i~~~~~~~~~~~~----~~~~~ii~iSa~~g~gi~~l 519 (967)
.-.++|+|+||+|+.... ....++..+.+......+. -..+.++++||++|.||.++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v 334 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 334 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence 234599999999985210 0012233332222222221 13568899999999999984
No 275
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.16 E-value=2.2e-06 Score=95.10 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccCCCChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeeceeeeec
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNT 401 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 401 (967)
....+|+++|++|+|||||+|+|++..... . ....+.|++.....+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~----------~----------------------~~~p~tTi~p~~G~v~v 65 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGN----------P----------------------ANYPYATIDPEEAKVAV 65 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTS----------T----------------------TCCSSCCCCTTEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccc----------c----------------------cCCCceeecceeeeeee
Confidence 345789999999999999999999732100 0 01122333333222333
Q ss_pred CC-----------------ceEEEeeChhhHH-------HHHHHHhhcccCCEEEEEEeCCC
Q psy3751 402 PK-----------------RKFIIADTPGHEQ-------YTRNMITGASTADAVIILIDASK 439 (967)
Q Consensus 402 ~~-----------------~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 439 (967)
.+ ..+.++|+||... +.......++.+|.+++|+|+.+
T Consensus 66 ~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 66 PDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 3578999999422 33345666788999999999975
No 276
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.10 E-value=6e-06 Score=87.98 Aligned_cols=93 Identities=24% Similarity=0.320 Sum_probs=60.4
Q ss_pred EeeChhhH-HHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHH
Q psy3751 408 IADTPGHE-QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKR 486 (967)
Q Consensus 408 liDtpG~~-~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~ 486 (967)
+-+.|||. +..+.+...+..+|++++|+||..+.. .. +..+.+.++.++.++|+||+|+++. ..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~---~~~l~~~l~~kp~ilVlNK~DL~~~--~~--- 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SR---NPMIEDILKNKPRIMLLNKADKADA--AV--- 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TS---CHHHHHHCSSSCEEEEEECGGGSCH--HH---
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cC---CHHHHHHHCCCCEEEEEECcccCCH--HH---
Confidence 34579986 677888899999999999999998322 11 1112222355668999999999852 21
Q ss_pred HHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 487 IVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 487 i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+...++++..++ +++++||.+|.|+.++
T Consensus 68 -~~~~~~~~~~~g~---~~i~iSA~~~~gi~~L 96 (282)
T 1puj_A 68 -TQQWKEHFENQGI---RSLSINSVNGQGLNQI 96 (282)
T ss_dssp -HHHHHHHHHTTTC---CEEECCTTTCTTGGGH
T ss_pred -HHHHHHHHHhcCC---cEEEEECCCcccHHHH
Confidence 1223334444454 7899999999999984
No 277
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.08 E-value=2.4e-06 Score=94.17 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=71.3
Q ss_pred eEeeceeeeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCC---CCCC-CCchhhHHHHHHHHHH---cC
Q psy3751 391 TIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK---FNPS-VNLLTQTKRHSIIAHL---LR 463 (967)
Q Consensus 391 Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~---~~~~-~g~~~~t~~~~~~~~~---~~ 463 (967)
|+.+....+..++..+.+|||+|++.|...+...+..++++|+|+|.++.. +|.. ..-.......+..... +.
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 433444556667888999999999999999999999999999999998711 0000 0111222222222221 22
Q ss_pred CCeEEEEEecCCccCcC----------------HHHHHHHHHHHHHHHHHcC----CccceEEeccccCCCccccc
Q psy3751 464 IKHIIIAVNKMDLINYN----------------QIFYKRIVYAYKKFAEDIH----FQNINTIPISALNGDNIISA 519 (967)
Q Consensus 464 ~~~iivviNK~D~~~~~----------------~~~~~~i~~~~~~~~~~~~----~~~~~ii~iSa~~g~gi~~l 519 (967)
-.++|+++||+|+.... ....++..+.+......+. -..+.++++||++|.||.++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v 343 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 343 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence 34599999999986210 0112233322221111211 12457899999999999985
No 278
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.03 E-value=2.5e-05 Score=87.57 Aligned_cols=95 Identities=22% Similarity=0.142 Sum_probs=55.7
Q ss_pred CCceEEEeeChhhHH------HHHHHHh--hcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcCCCeEEEEEe
Q psy3751 402 PKRKFIIADTPGHEQ------YTRNMIT--GASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLRIKHIIIAVN 472 (967)
Q Consensus 402 ~~~~~~liDtpG~~~------~~~~~~~--~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~~~~iivviN 472 (967)
.+..+.|+||||... +...+.. .+..+|.++||+|+.. |.. ..+.+... ..+++ ..||+|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~-------gq~--a~~~a~~f~~~~~~--~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI-------GQK--AYDLASRFHQASPI--GSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG-------GGG--GHHHHHHHHHHCSS--EEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc-------chH--HHHHHHHHhcccCC--cEEEEe
Confidence 467899999999422 3333322 2235799999999987 321 11222222 23333 577899
Q ss_pred cCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 473 KMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 473 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
|+|.... .. .+. .+....+. |+.+++. |++++++.
T Consensus 247 KlD~~a~-~G---~al----s~~~~~g~---Pi~fig~--Ge~v~dL~ 281 (433)
T 3kl4_A 247 KMDGTAK-GG---GAL----SAVVATGA---TIKFIGT--GEKIDELE 281 (433)
T ss_dssp CGGGCSC-HH---HHH----HHHHHHTC---EEEEEEC--CSSSSCEE
T ss_pred ccccccc-ch---HHH----HHHHHHCC---CEEEEEC--CCChHhCc
Confidence 9998742 21 111 12223344 8888875 88887654
No 279
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.02 E-value=1.3e-05 Score=81.76 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=84.6
Q ss_pred CcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCC------hhhHHHHHHHHHHhCCcEEEEecchhhhhcccc
Q psy3751 39 NPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNF------PEVISFRDNCISKLGETLIVRSVEDSIMKGTVR 112 (967)
Q Consensus 39 ~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~------pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~ 112 (967)
++++++||||||++.++++.+. +.++.+++...+... ....+.++++++.+|+|+.++......
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~----G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~------ 75 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKN----RFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEK------ 75 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC----------
T ss_pred EEEEEecCcHHHHHHHHHHHHc----CCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCc------
Confidence 5789999999999999999887 556776665544321 123467889999999999988654210
Q ss_pred cCCCCcccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceE
Q psy3751 113 LRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIR 192 (967)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 192 (967)
.-....+.+.+++.+.+++++|--..+...+...+..+ .. +..-
T Consensus 76 ----------~~e~e~l~~~l~~~~i~~vv~Gdi~s~yqr~r~e~vc~---~~-----------------------gl~~ 119 (237)
T 3rjz_A 76 ----------EKEVEDLKRVLSGLKIQGIVAGALASKYQRKRIEKVAK---EL-----------------------GLEV 119 (237)
T ss_dssp ------------CHHHHHHHHTTSCCSEEECC---CCSHHHHHHHHHH---HT-----------------------TCEE
T ss_pred ----------hHHHHHHHHHHHhcCCcEEEECCcchHHHHHHHHHHHH---Hc-----------------------CCEE
Confidence 01124466666667889999998876553322222222 11 1345
Q ss_pred EeeCCCCcHHHHHHHHHHcCCC
Q psy3751 193 VFPISNWTELDIWQYIEREKII 214 (967)
Q Consensus 193 i~Pl~~wt~~dV~~yi~~~~lp 214 (967)
+.||.....+++..-+...|+.
T Consensus 120 ~~PLW~~d~~~Ll~e~i~~G~~ 141 (237)
T 3rjz_A 120 YTPAWGRDAKEYMRELLNLGFK 141 (237)
T ss_dssp ECSSSSCCHHHHHHHHHHTTCE
T ss_pred EccccCCCHHHHHHHHHHCCCE
Confidence 7899999999998888888763
No 280
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.01 E-value=7.7e-06 Score=97.65 Aligned_cols=163 Identities=12% Similarity=-0.070 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCC---CCeeEEEeeCCCCChhhHHHHHHHHHHhC
Q psy3751 20 DWLESEAIHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSR---FPFPMVHIDTGHNFPEVISFRDNCISKLG 94 (967)
Q Consensus 20 ~~~~~~a~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~---~~i~~v~idtg~~~pet~~~~~~~~~~~g 94 (967)
++..+.....|+++++.. ++++|++|||.||++++.++.++....+ .++.+++++.....+++.+.++++++.+|
T Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~~~~~~~~~~A~~la~~lg 421 (680)
T 3sdb_A 342 YEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFATGEHTKNNAIKLARALG 421 (680)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC--------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 344445555666666655 5689999999999998888877652222 46889999977666778899999999999
Q ss_pred CcEEEEecchhhhhcccccC------C--CCcccc---hhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccc
Q psy3751 95 ETLIVRSVEDSIMKGTVRLR------K--PNTDSR---NAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRD 163 (967)
Q Consensus 95 i~i~~~~~~~~~~~~~~~~~------~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~ 163 (967)
++++++.....+........ . +....| .++|...+...+.+.|..++-||+ .+|..-- +..
T Consensus 422 i~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn-~sE~~~G-------y~T 493 (680)
T 3sdb_A 422 VTFSEIDIGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGD-LSELALG-------WST 493 (680)
T ss_dssp CEEEECCCHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCC-HHHHHHT-------CSC
T ss_pred CCEEEEECHHHHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCc-HHhHhcC-------eee
Confidence 99999887765433221111 1 111122 224445566777777764444443 4444211 000
Q ss_pred cC-CCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHc
Q psy3751 164 KF-GQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIERE 211 (967)
Q Consensus 164 ~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~ 211 (967)
.+ +- ..--++||.++++.+|+..+++.
T Consensus 494 ~~~gD---------------------~~~~~~Pl~~l~K~eVr~lar~l 521 (680)
T 3sdb_A 494 YGVGD---------------------QMSHYNVNAGVPKTLIQHLIRWV 521 (680)
T ss_dssp CSSST---------------------TCCSEETTTTSCHHHHHHHHHHH
T ss_pred ccCCC---------------------ccccccccCCCcHHHHHHHHHHH
Confidence 00 00 01127899999999999988876
No 281
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.01 E-value=2.7e-05 Score=83.45 Aligned_cols=96 Identities=24% Similarity=0.157 Sum_probs=57.1
Q ss_pred CCceEEEeeChhhHH--H----HHHH--HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEec
Q psy3751 402 PKRKFIIADTPGHEQ--Y----TRNM--ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNK 473 (967)
Q Consensus 402 ~~~~~~liDtpG~~~--~----~~~~--~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK 473 (967)
.++.+.||||||... . ...+ +..+..+|.+++|+|+.. + .+..+.+..... ..+...+|+||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-------g--~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI-------G--QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG-------G--GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc-------h--HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 567899999999544 2 2211 124457999999999975 3 223333332222 34436778999
Q ss_pred CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 474 MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 474 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+|.... . .. +..+...++. |+.+++ +|++++++.
T Consensus 249 ~D~~~~-~---g~----~~~~~~~~~~---pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 249 MDGTAK-G---GG----ALSAVAATGA---TIKFIG--TGEKIDELE 282 (297)
T ss_dssp GGGCTT-H---HH----HHHHHHTTTC---CEEEEE--CSSSTTCEE
T ss_pred CCCCcc-h---HH----HHHHHHHHCc---CEEEEe--CCCChhhcc
Confidence 997642 1 11 1234444554 677766 688887653
No 282
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.86 E-value=1.9e-05 Score=87.63 Aligned_cols=87 Identities=23% Similarity=0.248 Sum_probs=57.9
Q ss_pred eEeeceeeeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCC---CCCCC-CCchhhHHHHHHHHHH---cC
Q psy3751 391 TIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKI---KFNPS-VNLLTQTKRHSIIAHL---LR 463 (967)
Q Consensus 391 Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~---~~~~~-~g~~~~t~~~~~~~~~---~~ 463 (967)
|+.+....+..++..+.+|||+|++.|...+...++.++++|+|+|.++. -+|.. ..-.......+..... ..
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 44444455666778899999999999999999999999999999999861 11110 1112223333322222 12
Q ss_pred CCeEEEEEecCCcc
Q psy3751 464 IKHIIIAVNKMDLI 477 (967)
Q Consensus 464 ~~~iivviNK~D~~ 477 (967)
-.++|+|.||+|+.
T Consensus 284 ~~piiLvgNK~DL~ 297 (402)
T 1azs_C 284 TISVILFLNKQDLL 297 (402)
T ss_dssp SCCEEEEEECHHHH
T ss_pred CCeEEEEEEChhhh
Confidence 23499999999985
No 283
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=97.81 E-value=4.7e-05 Score=90.45 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=100.2
Q ss_pred HHHHHHHHHcC--CCcEEEEecChhHHHHHHHHH-------HhcCCCC------------C------C------------
Q psy3751 27 IHIMREVSAEC--NNPVLLFSGGKDSVVLLRLAE-------KAFRPSR------------F------P------------ 67 (967)
Q Consensus 27 ~~~i~~~~~~~--~~i~va~SGGKDS~vlL~l~~-------~~~~~~~------------~------~------------ 67 (967)
..-++.++++. ++++|++|||.||++++.|+. ++++..+ . .
T Consensus 291 ~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (634)
T 3ilv_A 291 SLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVF 370 (634)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHhhhhe
Confidence 33444444444 689999999999999888743 3332100 0 0
Q ss_pred eeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhhhcccc----cCC-CC-----ccc---chhhcHHHHHHHHH
Q psy3751 68 FPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVR----LRK-PN-----TDS---RNAAQSITLLETIK 134 (967)
Q Consensus 68 i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~----~~~-~~-----~~~---~~~~~~~~~~~~~~ 134 (967)
+..+|..+....+++.+-++++++.+|+++.++...+.+...... .+. +. ... +.++|...+...+.
T Consensus 371 ~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R~~~l~~~A~ 450 (634)
T 3ilv_A 371 LTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQARGRAPIIWMLTN 450 (634)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHHHHHHH
T ss_pred eeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhhhhHHHHHHHHHHHHH
Confidence 668888876667789999999999999999999887655432210 011 11 111 12244556777778
Q ss_pred HcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCccccccccccCCCCCceEEeeCCCCcHHHHHHHHHHc---
Q psy3751 135 EFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIERE--- 211 (967)
Q Consensus 135 ~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~--- 211 (967)
+.|..++-||+ .+|..-- +...++. ...-++||.++++.||+..+++.
T Consensus 451 ~~g~lvlgTgn-ksE~~~G-------y~T~ygD---------------------~~~~~~Pl~~l~KteVr~la~~l~~~ 501 (634)
T 3ilv_A 451 VKQALLITTSN-RSEGDVG-------YATMDGD---------------------TAGGIAPIAGVDKDFIRSWLRWAEKN 501 (634)
T ss_dssp HHTCEEBCCCC-HHHHHTT-------CSCTTTT---------------------TCSSBBTTTTSCHHHHHHHHHHHHHH
T ss_pred hcCCEEeccCc-hhhHhhC-------CccccCC---------------------cccCCcccCCCcHHHHHHHHHHHHHc
Confidence 88886666665 3444211 0111000 00126799999999999999988
Q ss_pred -CCC
Q psy3751 212 -KII 214 (967)
Q Consensus 212 -~lp 214 (967)
++|
T Consensus 502 ~glp 505 (634)
T 3ilv_A 502 RNQH 505 (634)
T ss_dssp SCCG
T ss_pred CCCc
Confidence 887
No 284
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.79 E-value=1.6e-05 Score=84.57 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
...++|+++|.+|+|||||+|+|++.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC
Confidence 35689999999999999999999973
No 285
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.78 E-value=2.2e-05 Score=91.35 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.+..+|+|+|.+|+|||||+|+|++.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC
Confidence 46688999999999999999999973
No 286
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.77 E-value=5.4e-05 Score=81.53 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=58.2
Q ss_pred hhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCcc
Q psy3751 423 TGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQN 502 (967)
Q Consensus 423 ~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~ 502 (967)
..++++|.+++|+|++++.+ .. ....+.+..+...+++ +|+|+||+|+.+..+ . +..++...+.+..++
T Consensus 75 ~~~~naD~vliV~d~~~p~~----s~-~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~~--v-~~~~~~~~~~~~~g~-- 143 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEF----NN-YLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEE--K-KELERWISIYRDAGY-- 143 (302)
T ss_dssp TEEESCCEEEEEECSTTTTC----CH-HHHHHHHHHHHHTTCE-EEEEECCGGGCCHHH--H-HHHHHHHHHHHHTTC--
T ss_pred HHHHhcCEEEEEEECCCCCC----CH-HHHHHHHHHHHhCCCC-EEEEEEcccCCCccc--c-HHHHHHHHHHHHCCC--
Confidence 36799999999999997432 11 1233444455556766 788999999985321 1 112334455556665
Q ss_pred ceEEeccccCCCcccccc
Q psy3751 503 INTIPISALNGDNIISAS 520 (967)
Q Consensus 503 ~~ii~iSa~~g~gi~~l~ 520 (967)
+++++||++|.|++++.
T Consensus 144 -~~~~~SA~~g~gi~~L~ 160 (302)
T 2yv5_A 144 -DVLKVSAKTGEGIDELV 160 (302)
T ss_dssp -EEEECCTTTCTTHHHHH
T ss_pred -eEEEEECCCCCCHHHHH
Confidence 78999999999999853
No 287
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.74 E-value=3.9e-05 Score=85.03 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=62.5
Q ss_pred hHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHH
Q psy3751 414 HEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKK 493 (967)
Q Consensus 414 ~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~ 493 (967)
.++|.+.+....+.+|++++|+|+.++.. .+.....+ .++-.++++|+||+|+.+... ..+.+.+.++.
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~----~~~~~l~~------~~~~~p~ilV~NK~DL~~~~~-~~~~~~~~l~~ 124 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNG----SWLPGLHR------FVGNNKVLLVGNKADLIPKSV-KHDKVKHWMRY 124 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHH----HCCTTHHH------HSSSSCEEEEEECGGGSCTTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcc----cHHHHHHH------HhCCCcEEEEEEChhcCCccc-CHHHHHHHHHH
Confidence 46677666666678889999999987210 11122222 233455899999999976421 12334444555
Q ss_pred HHHHcCCccceEEeccccCCCccccc
Q psy3751 494 FAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 494 ~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
+.+..|+...+++++||++|.|++++
T Consensus 125 ~~~~~g~~~~~v~~iSA~~g~gi~~L 150 (368)
T 3h2y_A 125 SAKQLGLKPEDVFLISAAKGQGIAEL 150 (368)
T ss_dssp HHHHTTCCCSEEEECCTTTCTTHHHH
T ss_pred HHHHcCCCcccEEEEeCCCCcCHHHH
Confidence 66777775457899999999999984
No 288
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.72 E-value=2.4e-05 Score=86.76 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=64.0
Q ss_pred EEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHH
Q psy3751 406 FIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYK 485 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~ 485 (967)
+.-+++| +++|.+.+......+|++++|+|+.++.. .+.+...+. ++.+++++|+||+|+.+... ..+
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~------l~~~piilV~NK~DLl~~~~-~~~ 118 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRF------AADNPILLVGNKADLLPRSV-KYP 118 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHH------CTTSCEEEEEECGGGSCTTC-CHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHH------hCCCCEEEEEEChhcCCCcc-CHH
Confidence 3344554 66777766666688999999999998331 222333222 34456899999999986421 113
Q ss_pred HHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 486 RIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 486 ~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
.+.+.+..+++..|+...+++++||++|.|++++
T Consensus 119 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L 152 (369)
T 3ec1_A 119 KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKV 152 (369)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHH
T ss_pred HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHH
Confidence 3444455566777765447899999999999984
No 289
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.64 E-value=4.2e-05 Score=83.82 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=49.0
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCC---CCCC-CCCchhhHHHHHHHHHH---cCCCeEEEEEecCC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKI---KFNP-SVNLLTQTKRHSIIAHL---LRIKHIIIAVNKMD 475 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~---~~~~-~~g~~~~t~~~~~~~~~---~~~~~iivviNK~D 475 (967)
...+.+|||+|++.|...+...++.+|++|+|+|.++. -++. ...-.......+..... ..-.++|+|.||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 46789999999999999999999999999999998720 0010 11122223333322221 22345999999999
Q ss_pred cc
Q psy3751 476 LI 477 (967)
Q Consensus 476 ~~ 477 (967)
+.
T Consensus 262 L~ 263 (354)
T 2xtz_A 262 IF 263 (354)
T ss_dssp HH
T ss_pred hh
Confidence 84
No 290
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.63 E-value=0.00027 Score=76.60 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=55.9
Q ss_pred CceEEEeeChhhH----HHHHHHH--hhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcCCCeEEEEEecCC
Q psy3751 403 KRKFIIADTPGHE----QYTRNMI--TGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLRIKHIIIAVNKMD 475 (967)
Q Consensus 403 ~~~~~liDtpG~~----~~~~~~~--~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~~~~iivviNK~D 475 (967)
+..+.++||+|.. .+...+. ..+-.+|-.++++|+.. + .+..+.+... ..+++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t-------~--~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALA-------G--NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGG-------T--THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHH-------H--HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 4567889999942 2333322 12235799999999877 3 2333333333 245655 66799999
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 476 LINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
....-.. + ..+....+. |+.+++ +|++++++.
T Consensus 280 ~~a~~G~----~----l~~~~~~~~---pi~~i~--~Ge~v~dl~ 311 (328)
T 3e70_C 280 ADARGGA----A----LSISYVIDA---PILFVG--VGQGYDDLR 311 (328)
T ss_dssp GCSCCHH----H----HHHHHHHTC---CEEEEE--CSSSTTCEE
T ss_pred CccchhH----H----HHHHHHHCC---CEEEEe--CCCCccccc
Confidence 7543222 1 223444454 778877 888887653
No 291
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.58 E-value=0.00014 Score=81.93 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=39.4
Q ss_pred CCceEEEeeChhhHHH----HHHH--HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH-HHHcCCCeEEEEEecC
Q psy3751 402 PKRKFIIADTPGHEQY----TRNM--ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSII-AHLLRIKHIIIAVNKM 474 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~----~~~~--~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~-~~~~~~~~iivviNK~ 474 (967)
.++.++||||||...+ ...+ +..+..+|.+++|+|+.. +. .....+.. ...+++. -+|+||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~-------g~--~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMT-------GQ--DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB-------CT--THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecch-------hH--HHHHHHHHHhccCCCe--EEEEecC
Confidence 4678999999994322 2221 122457899999999986 31 12222221 2233433 4579999
Q ss_pred CccC
Q psy3751 475 DLIN 478 (967)
Q Consensus 475 D~~~ 478 (967)
|...
T Consensus 251 D~~~ 254 (433)
T 2xxa_A 251 DGDA 254 (433)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 9754
No 292
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.55 E-value=9.5e-05 Score=63.03 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=67.4
Q ss_pred EEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEeCccccceeecCCeEEEEEccccCCCCCc
Q psy3751 553 VQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGK---KATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGN 629 (967)
Q Consensus 553 i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~---~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~~i~~G~ 629 (967)
|..+|+.+..| ++...+|.+|.++.+..+.+.+.+. ..++.|+..+..++.++..|.-|+|.+.+..|++.||
T Consensus 11 Vr~vF~isk~g----~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~~dik~GD 86 (99)
T 1d1n_A 11 VRQTFKVSKVG----TIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNFNDIKEGD 86 (99)
T ss_dssp ECCCCCCSSSC----CCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTCSSCSSCS
T ss_pred EEEEEEcCCce----EEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCcCCCCCCC
Confidence 44567766555 7777889999999999999999984 5689999999999999999999999999988999999
Q ss_pred cccc
Q psy3751 630 MLVS 633 (967)
Q Consensus 630 vl~~ 633 (967)
+|-.
T Consensus 87 ~Ie~ 90 (99)
T 1d1n_A 87 VIEA 90 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8854
No 293
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.52 E-value=0.00016 Score=71.36 Aligned_cols=178 Identities=10% Similarity=0.056 Sum_probs=79.7
Q ss_pred CCeeEEEEEec-CCCChHHHHhHHHhccCCC-----ChHHHHHHhHHHhhcccCCCceeeeeccCCchhhhccceeEeec
Q psy3751 322 HSLLRFITAGS-VDDGKSTLIGRLLFDSKNI-----FIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVA 395 (967)
Q Consensus 322 ~~~~~v~ivG~-~~~GKSTLi~~L~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~g~Ti~~~ 395 (967)
....++|+.|+ -..=+.+|+.+|+...... ..+.++.+..--.-.-.....|++-++..++..||++..--+.+
T Consensus 14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~ 93 (227)
T 3l82_B 14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS 93 (227)
T ss_dssp CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------------
T ss_pred CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhh
Confidence 34567888886 2333457888888733111 11111100000000000112455566666777777754322111
Q ss_pred eeeeecCCceEEEeeCh------hhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHH----HHH-HH---
Q psy3751 396 YRYFNTPKRKFIIADTP------GHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHS----IIA-HL--- 461 (967)
Q Consensus 396 ~~~~~~~~~~~~liDtp------G~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~----~~~-~~--- 461 (967)
. ..++..-.+| |+..+...+...+..+|++|+|||+++... . ..++-+ .++ ..
T Consensus 94 ~------~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R------~-eak~EL~eL~~mL~ee~~L 160 (227)
T 3l82_B 94 A------VNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR------H-EWQDEFSHIMAMTDPAFGS 160 (227)
T ss_dssp -----------------------------CCHHHHHHHCSEEEEEEECBTTCC------C-CHHHHHHHHHHHSCTTSSC
T ss_pred h------hhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhH------H-HHHHHHHHHHHHhcchhhh
Confidence 1 0123333444 677777777778889999999999997321 1 133322 122 11
Q ss_pred cCCCeEEEEEecC-CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 462 LRIKHIIIAVNKM-DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 462 ~~~~~iivviNK~-D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
.+++ ++|..||. |+.+.-.. .++.+.+. +..+. ..+.+.++||++|+|+.+
T Consensus 161 ~gap-LLVlANKqqDlp~Ams~--~EI~e~L~--L~~l~-R~W~Iq~csA~TGeGL~E 212 (227)
T 3l82_B 161 SGRP-LLVLSCISQGDVKRMPC--FYLAHELH--LNLLN-HPWLVQDTEAETLTGFLN 212 (227)
T ss_dssp SCSC-EEEEEEESSTTSCBCCH--HHHHHHTT--GGGGC-SCEEEEEEETTTCTTHHH
T ss_pred CCCe-EEEEeCCCcCccCCCCH--HHHHHHcC--CcCCC-CCEEEEEeECCCCcCHHH
Confidence 2445 88889995 67654221 23333221 22232 467899999999999876
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.52 E-value=0.00048 Score=77.75 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=53.0
Q ss_pred CCceEEEeeChhhH----HHHHH---HHhhc-----ccCCEEEEEEeCCCCCCCCCCCchhhHHHHHH-HHHHcCCCeEE
Q psy3751 402 PKRKFIIADTPGHE----QYTRN---MITGA-----STADAVIILIDASKIKFNPSVNLLTQTKRHSI-IAHLLRIKHII 468 (967)
Q Consensus 402 ~~~~~~liDtpG~~----~~~~~---~~~~~-----~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~-~~~~~~~~~ii 468 (967)
.+..+.|+||+|.. .+... +...+ ...+-++||+|+.. |.. ....+. +...+++. .
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt-------Gq~--al~~ak~f~~~~~it--g 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST-------GQN--AVSQAKLFHEAVGLT--G 442 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG-------THH--HHHHHHHHHHHTCCS--E
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc-------cHH--HHHHHHHHHhhcCCC--E
Confidence 35678999999932 22222 11111 23678999999987 421 122222 23346766 4
Q ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccccc
Q psy3751 469 IAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520 (967)
Q Consensus 469 vviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~ 520 (967)
+++||+|-...-.. +..++..++. |+.+++ +|++++++.
T Consensus 443 vIlTKLD~takgG~--------~lsi~~~~~~---PI~fig--~Ge~vdDL~ 481 (503)
T 2yhs_A 443 ITLTKLDGTAKGGV--------IFSVADQFGI---PIRYIG--VGERIEDLR 481 (503)
T ss_dssp EEEECGGGCSCCTH--------HHHHHHHHCC---CEEEEE--CSSSGGGEE
T ss_pred EEEEcCCCcccccH--------HHHHHHHHCC---CEEEEe--cCCChhhcc
Confidence 67999997533221 2233444554 666643 677777653
No 295
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.50 E-value=0.00018 Score=75.63 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=54.0
Q ss_pred hhhHH-HHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHH
Q psy3751 412 PGHEQ-YTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYA 490 (967)
Q Consensus 412 pG~~~-~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~ 490 (967)
|||.. ..+.+...+..+|++++|+||..+...... .. + + + + ++.|+|+||+|+++. ... +.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~----~l-~-l--l---~-k~~iivlNK~DL~~~--~~~----~~ 66 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY----GV-D-F--S---R-KETIILLNKVDIADE--KTT----KK 66 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT----TS-C-C--T---T-SEEEEEEECGGGSCH--HHH----HH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh----HH-H-h--c---C-CCcEEEEECccCCCH--HHH----HH
Confidence 88864 346777888999999999999984432111 11 1 1 1 4 458899999999863 212 22
Q ss_pred HHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 491 YKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 491 ~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
..+++++.|+ ++ ++||.+|.|+.+
T Consensus 67 ~~~~~~~~g~---~v-~iSa~~~~gi~~ 90 (262)
T 3cnl_A 67 WVEFFKKQGK---RV-ITTHKGEPRKVL 90 (262)
T ss_dssp HHHHHHHTTC---CE-EECCTTSCHHHH
T ss_pred HHHHHHHcCC---eE-EEECCCCcCHHH
Confidence 3334445555 66 999999999887
No 296
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.38 E-value=8.6e-05 Score=78.06 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHhHHHh
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
++++++|.+|+|||||+|+|++
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 6899999999999999999997
No 297
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.36 E-value=0.00027 Score=75.56 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=57.9
Q ss_pred hcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCccc
Q psy3751 424 GASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503 (967)
Q Consensus 424 ~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 503 (967)
.+.++|.+++|+|+..+.|. . ....+.+..+...+++ .++|+||+|+.+..+ ..+..+.+.+..+..|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~----~-~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~~--~~~~~~~~~~~y~~~g~--- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFS----T-ALLDRFLVLVEANDIQ-PIICITKMDLIEDQD--TEDTIQAYAEDYRNIGY--- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCC----H-HHHHHHHHHHHTTTCE-EEEEEECGGGCCCHH--HHHHHHHHHHHHHHHTC---
T ss_pred HHHhCCEEEEEEeCCCCCCC----H-HHHHHHHHHHHHCCCC-EEEEEECCccCchhh--hHHHHHHHHHHHHhCCC---
Confidence 57899999999999975542 2 2334444455566776 678899999986422 00112334445555676
Q ss_pred eEEeccccCCCccccc
Q psy3751 504 NTIPISALNGDNIISA 519 (967)
Q Consensus 504 ~ii~iSa~~g~gi~~l 519 (967)
+++++||.+|.|++++
T Consensus 152 ~v~~~sa~~~~g~~~L 167 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADI 167 (307)
T ss_dssp CEEECCHHHHTTCTTT
T ss_pred eEEEEecCCCCCHHHH
Confidence 7899999999998874
No 298
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.35 E-value=0.00031 Score=62.06 Aligned_cols=82 Identities=12% Similarity=0.207 Sum_probs=67.8
Q ss_pred eeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEeCccccceeecCCeEEEEEcccc-CCC
Q psy3751 551 FPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGK---KATIKDIQMLNKSLDMAITGQSVTLIIKEYL-DIS 626 (967)
Q Consensus 551 ~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~---~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~~-~i~ 626 (967)
.-|..+|+.+..| ...++...+|..|.++.+..+.+.+.+. ..++.|+..+..++.++..|.-|+|.+.+.. |++
T Consensus 13 AeVr~vF~isk~g-~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~fniDik 91 (120)
T 2crv_A 13 ASILATFTVTEGK-KKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEEKVEFK 91 (120)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCTTSCCC
T ss_pred EEEeEEEEeCCCC-ceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccCCCCCC
Confidence 4466777766544 0012677789999999999999999984 4578899999999999999999999999988 999
Q ss_pred CCccccc
Q psy3751 627 RGNMLVS 633 (967)
Q Consensus 627 ~G~vl~~ 633 (967)
.||+|-.
T Consensus 92 ~GDiIE~ 98 (120)
T 2crv_A 92 PGDQVIC 98 (120)
T ss_dssp TTEEEEE
T ss_pred CCCEEEE
Confidence 9999865
No 299
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=97.32 E-value=0.00069 Score=79.03 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEecChhHHHHHHHHHHhcCCCC----------CCeeEEEeeCCCCChhhHHHHHHHHHHhC
Q psy3751 25 EAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSR----------FPFPMVHIDTGHNFPEVISFRDNCISKLG 94 (967)
Q Consensus 25 ~a~~~i~~~~~~~~~i~va~SGGKDS~vlL~l~~~~~~~~~----------~~i~~v~idtg~~~pet~~~~~~~~~~~g 94 (967)
...+.++.-+.....+.+.+|||.||++++.++.+...+.. +++..+++... .....++++++++.+|
T Consensus 214 ~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~--~~~E~~~A~~vA~~lg 291 (553)
T 1ct9_A 214 ALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP--GSPDLKAAQEVANHLG 291 (553)
T ss_dssp HHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC--CCcHHHHHHHHHHHhC
Confidence 33333333333445677999999999999999998764310 23666666442 2235688999999999
Q ss_pred CcEEEEecchh-hhhc---cc-ccCCCCc-ccchhhcHHHHHHHHHHcCCcEEEEeccchhhH
Q psy3751 95 ETLIVRSVEDS-IMKG---TV-RLRKPNT-DSRNAAQSITLLETIKEFKFDACIGGARRDEEK 151 (967)
Q Consensus 95 i~i~~~~~~~~-~~~~---~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~ 151 (967)
++++.+..... +... .. ....+.. ..++......+.+.+++.|.+++++|+..||-.
T Consensus 292 ~~h~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElf 354 (553)
T 1ct9_A 292 TVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVF 354 (553)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHH
T ss_pred CCCEEEECCHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHcCCeEEEECCCchhcc
Confidence 99998876542 1111 00 1111111 111223344566777788999999999999864
No 300
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.29 E-value=0.00091 Score=78.08 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=103.1
Q ss_pred HHHHHHcC--CCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhCCcEEEEecchhhh
Q psy3751 30 MREVSAEC--NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIM 107 (967)
Q Consensus 30 i~~~~~~~--~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~gi~i~~~~~~~~~~ 107 (967)
++.++.+. ++++|+.|||.||++++.++.+++.. .++..+++-+-...+.+.+-++++++.+|+.+..+.....+.
T Consensus 291 l~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~--~~v~~v~mp~~~ts~~t~~~a~~la~~lg~~~~~i~i~~~~~ 368 (565)
T 4f4h_A 291 VRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA--ERVRAVMMPSRYTAGISTTDAADMARRVGVRYDEIAIAPMFD 368 (565)
T ss_dssp HHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG--GGEEEEECCCTTCCHHHHHHHHHHHHHHTCEEEECCCHHHHH
T ss_pred HHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC--ccEEEEeccccccccchHHHHHHHHHHhCCceeeeecchHHH
Confidence 34444433 78999999999999999999998763 367788877777778899999999999999999987766443
Q ss_pred hcccccC----CCC-----cccchhhcHHHHHHHHHHcCCcEEEEeccchhhHhhhccccccccccCCCCCCCCCCcccc
Q psy3751 108 KGTVRLR----KPN-----TDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELW 178 (967)
Q Consensus 108 ~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~R~~~~~~~~~~~~~~~~~~~~~p~~~ 178 (967)
....... ... .....++|...++..+.++|.-++-|| +++|..-- +...++.
T Consensus 369 ~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTg-n~sE~a~G-------y~T~~Gd----------- 429 (565)
T 4f4h_A 369 AFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTG-NKSEMAVG-------YCTLYGD----------- 429 (565)
T ss_dssp HHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECC-CHHHHHHT-------CSCTTTT-----------
T ss_pred HHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCC-chhhHhhc-------cccccCC-----------
Confidence 2211111 111 112344666678888888786555556 45553221 1111111
Q ss_pred ccccccCCCCCceEEeeCCCCcHHHHHHHHHHcC
Q psy3751 179 NLYNTRVHPGENIRVFPISNWTELDIWQYIEREK 212 (967)
Q Consensus 179 ~~~~~~~~~~~~~~i~Pl~~wt~~dV~~yi~~~~ 212 (967)
..--++||.+.++.+|+..+++.+
T Consensus 430 ----------~~~~~~pi~~l~Kt~v~~l~~~~~ 453 (565)
T 4f4h_A 430 ----------MAGGFAVIKDIAKTLVYRLCRYRN 453 (565)
T ss_dssp ----------TCSSEETTTTCCHHHHHHHHHHHH
T ss_pred ----------cccCchhccCccHHHHHHHHHHHh
Confidence 012489999999999999998755
No 301
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.21 E-value=0.0013 Score=70.52 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+.-.|+++|.+|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345689999999999999999986
No 302
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.21 E-value=0.0021 Score=69.35 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+...|+++|..|+||||++..|.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999876
No 303
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.19 E-value=0.0015 Score=69.74 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHh
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
...|+++|..|+||||++..|.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999975
No 304
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=97.18 E-value=0.00056 Score=79.01 Aligned_cols=127 Identities=12% Similarity=0.073 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHc----CCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhC
Q psy3751 19 LDWLESEAIHIMREVSAE----CNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLG 94 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~~----~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~g 94 (967)
.++..++..+.++++++. ...+.+.+|||.||++++.++.+... ++..+++.... ....++++++++.+|
T Consensus 219 ~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~~----~v~tfti~~~~--~~E~~~A~~vA~~lg 292 (513)
T 1jgt_A 219 EGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAAG----ELDTVSMGTDT--SNEFREARAVVDHLR 292 (513)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHHS----SCEEEEEECSS--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhCC----CceEEEcCCCC--CCHHHHHHHHHHHhC
Confidence 344455555555555443 35778999999999999999998753 46677775532 345688999999999
Q ss_pred CcEEEEecchh-hhhcccc----cCCCCc-ccchhhcHHHHHHHHHHcCCcEEEEeccchhhHh
Q psy3751 95 ETLIVRSVEDS-IMKGTVR----LRKPNT-DSRNAAQSITLLETIKEFKFDACIGGARRDEEKA 152 (967)
Q Consensus 95 i~i~~~~~~~~-~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~ 152 (967)
++++.+..... +...... ...+.+ ..+.......+.+.+ +.+.+++++|+..||-..
T Consensus 293 ~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~GaDElfg 355 (513)
T 1jgt_A 293 TRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPLG 355 (513)
T ss_dssp CEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHHT
T ss_pred CCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcCCCEEEeCCChhhccc
Confidence 99998877653 2221110 011111 111112222233333 468899999999998753
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.12 E-value=0.0025 Score=68.32 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=21.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+.-.|+++|+.|||||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999986
No 306
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=97.05 E-value=0.00081 Score=77.53 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHH----cCCCcEEEEecChhHHHHHHHHHHhcCCCCCCeeEEEeeCCCCChhhHHHHHHHHHHhC
Q psy3751 19 LDWLESEAIHIMREVSA----ECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLG 94 (967)
Q Consensus 19 l~~~~~~a~~~i~~~~~----~~~~i~va~SGGKDS~vlL~l~~~~~~~~~~~i~~v~idtg~~~pet~~~~~~~~~~~g 94 (967)
.++..++..+.++++++ ....+.+.+|||.||++++.++.+.. .++..+++... .+...++++++++.+|
T Consensus 216 ~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~~----~~~~~~t~~~~--~~~E~~~A~~vA~~lg 289 (503)
T 1q15_A 216 REPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRHF----KKLNTYSIGTE--LSNEFEFSQQVADALG 289 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTTC----SEEEEEEEEET--TBCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHhC----CCcEEEEEeCC--CccHHHHHHHHHHHhC
Confidence 34444444555544433 33567799999999999999988763 24666666543 2345688999999999
Q ss_pred CcEEEEecchh-hhhcccc----cCCCC-cccchhhcHHHHHHHHHHcCCcEEEEeccchhhHh
Q psy3751 95 ETLIVRSVEDS-IMKGTVR----LRKPN-TDSRNAAQSITLLETIKEFKFDACIGGARRDEEKA 152 (967)
Q Consensus 95 i~i~~~~~~~~-~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~des~~ 152 (967)
++++.+..... +...... ...+. ...+.......+.+.+ +.+..++++|...||-..
T Consensus 290 ~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~~~~VvltG~GaDElf~ 352 (503)
T 1q15_A 290 THHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNVYRQA-QGQVSCMLTGYGSDLLFG 352 (503)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-BTTBSEEECCTTHHHHHT
T ss_pred CceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHH-HCCCCEEEeCCChhhhcc
Confidence 99998876652 2111100 11111 1112222223344444 468899999999998753
No 307
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.02 E-value=0.0022 Score=75.95 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.|+++|+.|||||||++.|++.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999999984
No 308
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.95 E-value=0.00054 Score=71.13 Aligned_cols=136 Identities=7% Similarity=-0.028 Sum_probs=66.7
Q ss_pred ceeeeeccCCchhhhccceeEeecee--eeecCCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCch
Q psy3751 372 NIDLSLLTDGLESEREQGITIDVAYR--YFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449 (967)
Q Consensus 372 ~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~ 449 (967)
.|++-++..++..||++..-.+.+.. -|...+. .==|..|+..+...+...+..+|++|+|||+++.+. ....
T Consensus 155 ~fni~tLYs~tr~ER~r~~~e~~~~~~k~f~~~~~--~~~~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR---leak 229 (312)
T 3l2o_B 155 KFNILILYSTTRKERDRAREEHTSAVNKMFSRHNE--GDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HEWQ 229 (312)
T ss_dssp EEEEEECSCCCC--------------------------------CCCCCHHHHHHHHHCSEEEECCBCBTTCC---CCHH
T ss_pred eEEEEEeccccHHHHhhhhhhhhhhhhhhccccCC--CCcCCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH---HHHH
Confidence 46666777788888887553322211 1111000 001234667777777778889999999999998322 1111
Q ss_pred hhHHHHHHHH-H--H-cCCCeEEEEEec-CCccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCcccc
Q psy3751 450 TQTKRHSIIA-H--L-LRIKHIIIAVNK-MDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIIS 518 (967)
Q Consensus 450 ~~t~~~~~~~-~--~-~~~~~iivviNK-~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~ 518 (967)
....+...++ . . .+++ ++|..|| .|+.+.-.. .++.+.+. +..+. ....+.++||++|+|+.+
T Consensus 230 ~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams~--~EI~e~L~--L~~l~-r~W~Iq~csA~tGeGL~E 297 (312)
T 3l2o_B 230 DEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMPC--FYLAHELH--LNLLN-HPWLVQDTEAETLTGFLN 297 (312)
T ss_dssp HHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCCH--HHHHHHTT--GGGGC-SCEEEEEEETTTCTTHHH
T ss_pred HHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCCH--HHHHHHcC--CccCC-CcEEEEecccCCCcCHHH
Confidence 1111111222 1 1 3565 8888897 588654321 23333221 22232 467899999999999886
No 309
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.90 E-value=0.0076 Score=67.33 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=51.5
Q ss_pred CCceEEEeeChhhH----HHHHHH--HhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHH-HHHcCCCeEEEEEecC
Q psy3751 402 PKRKFIIADTPGHE----QYTRNM--ITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSII-AHLLRIKHIIIAVNKM 474 (967)
Q Consensus 402 ~~~~~~liDtpG~~----~~~~~~--~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~-~~~~~~~~iivviNK~ 474 (967)
.++.+.||||||.. .....+ +..+..+|.++||+|+.. + ......+.. ...+++ .-||+||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t-------g--q~av~~a~~f~~~l~i--~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-------G--QEALSVARAFDEKVGV--TGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-------T--THHHHHHHHHHHHTCC--CEEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc-------h--HHHHHHHHHHHhcCCc--eEEEEeCc
Confidence 46789999999932 233332 122346899999999976 3 112222221 223443 45679999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|....-.. + ..+....+. |+..++ .|+.++++
T Consensus 248 D~~~~~g~----a----lsi~~~~g~---PI~flg--~Ge~~~dl 279 (425)
T 2ffh_A 248 DGDARGGA----A----LSARHVTGK---PIYFAG--VSEKPEGL 279 (425)
T ss_dssp GGCSSCHH----H----HHHHHHHCC---CEEEEE--CSSSGGGE
T ss_pred CCcccHHH----H----HHHHHHHCC---CEEEEe--CCCChhhc
Confidence 97543221 1 123334454 666554 45556554
No 310
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.76 E-value=0.0033 Score=71.86 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=76.3
Q ss_pred HhhcccCCCcCCCCCceeeEEEeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEeCccccceee
Q psy3751 534 LLESLNTNEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGK---KATIKDIQMLNKSLDMAI 610 (967)
Q Consensus 534 ~l~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~~---~~~V~~i~~~~~~v~~a~ 610 (967)
+++.+..|.....-.-..-|..+|+.+..+ .+...+|..|.++.|..+.+.+.+. ..+|.||+.++.+++++.
T Consensus 394 ~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~----~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~ 469 (501)
T 1zo1_I 394 AMSGMLSPELKQQIIGLAEVRDVFKSPKFG----AIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVR 469 (501)
T ss_dssp HHTTTSSTTCCCCCCCCEEEEECSSCCCSS----CEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEE
T ss_pred HHHhhcCceeeeeeeeEEEEEEEEecCCCC----EEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEEC
Confidence 444444444333333344566788776545 7888899999999999999998884 679999999999999999
Q ss_pred cCCeEEEEEccccCCCCCccccc
Q psy3751 611 TGQSVTLIIKEYLDISRGNMLVS 633 (967)
Q Consensus 611 ~G~~v~l~l~~~~~i~~G~vl~~ 633 (967)
.|+-|++.+.+..+++.||+|-.
T Consensus 470 ~g~ecgi~~~~~~~~~~gd~~~~ 492 (501)
T 1zo1_I 470 NGMECGIGVKNYNDVRTGDVIEV 492 (501)
T ss_dssp TTCCEEEEBCCCTTCCTTCEEEE
T ss_pred CCCEEEEEEcCcCCCCCCCEEEE
Confidence 99999999999889999999865
No 311
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.56 E-value=0.0034 Score=68.36 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=54.1
Q ss_pred hhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHHHHHHHHHHHHHHHcCCcc
Q psy3751 423 TGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQN 502 (967)
Q Consensus 423 ~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~ 502 (967)
..+.++|.+++| ||..+.+ .. ....+.+..+...+++ .|+|+||+|+.+... . +..+......+..|+
T Consensus 126 ~i~anvD~v~iv-~a~~P~~----~~-~~i~r~L~~a~~~~~~-~iivlNK~DL~~~~~--~-~~~~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 126 PIAANIDQIVIV-SAILPEL----SL-NIIDRYLVGCETLQVE-PLIVLNKIDLLDDEG--M-DFVNEQMDIYRNIGY-- 193 (358)
T ss_dssp EEEECCCEEEEE-EESTTTC----CH-HHHHHHHHHHHHHTCE-EEEEEECGGGCCHHH--H-HHHHHHHHHHHTTTC--
T ss_pred HHHhcCCEEEEE-EeCCCCC----CH-HHHHHHHHHHHhcCCC-EEEEEECccCCCchh--H-HHHHHHHHHHHhCCC--
Confidence 346889999966 5555433 21 2334455556667887 578899999986321 1 112223334456676
Q ss_pred ceEEeccccCCCccccc
Q psy3751 503 INTIPISALNGDNIISA 519 (967)
Q Consensus 503 ~~ii~iSa~~g~gi~~l 519 (967)
+++++||.+|.|++++
T Consensus 194 -~v~~~Sa~~~~gl~~L 209 (358)
T 2rcn_A 194 -RVLMVSSHTQDGLKPL 209 (358)
T ss_dssp -CEEECBTTTTBTHHHH
T ss_pred -cEEEEecCCCcCHHHH
Confidence 6899999999998874
No 312
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.50 E-value=0.023 Score=60.53 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=47.8
Q ss_pred CCceEEEeeChhhH--H--HHHHHHhh--cccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHH-HHcCCCeEEEEEecC
Q psy3751 402 PKRKFIIADTPGHE--Q--YTRNMITG--ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIA-HLLRIKHIIIAVNKM 474 (967)
Q Consensus 402 ~~~~~~liDtpG~~--~--~~~~~~~~--~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~-~~~~~~~iivviNK~ 474 (967)
.++.+.|+||||.. + ....+... ...+|.+++|+|+.. + ....+.+... ..+++ .-+|+||+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-------~--~~~~~~~~~~~~~~~i--~givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-------G--QEALSVARAFDEKVGV--TGLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-------T--HHHHHHHHHHHHHTCC--CEEEEECG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-------c--HHHHHHHHHHhhcCCC--CEEEEECC
Confidence 45789999999832 1 22222111 135899999999875 3 1222222222 23333 34679999
Q ss_pred CccCcCHHHHHHHHHHHHHHHHHcCCccceEEeccccCCCccccc
Q psy3751 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISA 519 (967)
Q Consensus 475 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l 519 (967)
|....-.. + ..+....+. |+.+++ +|++++++
T Consensus 248 d~~~~~g~----~----~~~~~~~~~---pi~~i~--~g~~~~dl 279 (295)
T 1ls1_A 248 DGDARGGA----A----LSARHVTGK---PIYFAG--VSEKPEGL 279 (295)
T ss_dssp GGCSSCHH----H----HHHHHHHCC---CEEEEC--------CC
T ss_pred CCCccHHH----H----HHHHHHHCc---CEEEEe--CCCCcccc
Confidence 97643221 1 223344554 777765 56666554
No 313
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.44 E-value=0.017 Score=57.73 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=46.0
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCC----CeEEEEEecCCcc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI----KHIIIAVNKMDLI 477 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~----~~iivviNK~D~~ 477 (967)
.+.+.++|||+... ..+...+..+|.+|+++.+.. .- ..+...+..+..++. .++.+|+||+|.-
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~-------~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSP-------LD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCT-------TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCH-------HH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 57899999998542 334455677999999999877 44 556666666665541 2368899999954
No 314
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.43 E-value=0.0074 Score=67.75 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHh
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.+..-|+|+|.+++|||||+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4667799999999999999999997
No 315
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.98 E-value=0.073 Score=58.07 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+.-.++++|..|||||||++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345699999999999999999987
No 316
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=95.88 E-value=0.021 Score=65.82 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=120.7
Q ss_pred EEEeeChhhHHHHHHHHhhccc-CCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCcCHHHH
Q psy3751 406 FIIADTPGHEQYTRNMITGAST-ADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFY 484 (967)
Q Consensus 406 ~~liDtpG~~~~~~~~~~~~~~-aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~ 484 (967)
+.=-|+-|.-.-+...+..+.. -.+-+=|+.+ ++-+-+...+.++...+- +|+.+|= .+ +..
T Consensus 343 iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~---------~vG~i~~~Dv~~a~~~~a--~i~~fnv--~~--~~~-- 405 (537)
T 3izy_P 343 IVKGDVDGSVEAILNVMDTYDASHECELDLVHF---------GVGDISENDVNLAETFHG--VIYGFNV--NA--GNV-- 405 (537)
T ss_dssp EEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCC---------CBSCBCHHHHHHHHHHSC--CEEESSC--CB--CHH--
T ss_pred EEEeCCcchHHHHHHHHHhcCCCCcEEEEEEEe---------cCCCCCHHHHHHHHhcCC--eEEEecC--CC--CHH--
Confidence 4446999988877777777654 3344444444 333445556666666543 5777763 11 211
Q ss_pred HHHHHHHHHHHHHcCCccceEEeccccCCCcccccccCCCCCCCCcHHHHhhcccCCCcCCCCCceeeEEEeecCCCccC
Q psy3751 485 KRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHIS 564 (967)
Q Consensus 485 ~~i~~~~~~~~~~~~~~~~~ii~iSa~~g~gi~~l~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 564 (967)
.+.+.++.+. .+..-+ =|.++.+ .+.+.+..+..|.....-.-..-|..+|.... +.
T Consensus 406 ------~~~~a~~~~v---~i~~~~-----iiy~l~~--------~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~-~~ 462 (537)
T 3izy_P 406 ------IQQLAAKKGV---KIKLHK-----IIYRLIE--------DLQEELSSRLPCIVEEHPIGEASILATFSITE-GK 462 (537)
T ss_dssp ------HHHHHHHHTC---CCBCSC-----SSCCSHH--------HHHHHHSSSSSCSSSCCCSSEEEEEEEESSCS-SS
T ss_pred ------HHHHHHHcCC---eEEEeC-----hHHHHHH--------HHHHHHHhccCCceEEEEEEEEEEcCcEEECC-CC
Confidence 2233444443 222111 1112111 14455666555555444445667778888663 11
Q ss_pred CCceEEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEeCccccceeecCCeEEEEEcc-ccCCCCCcccc
Q psy3751 565 KDFRGYMGRIESGIIKKNDCLIVEPSGK---KATIKDIQMLNKSLDMAITGQSVTLIIKE-YLDISRGNMLV 632 (967)
Q Consensus 565 ~~~~v~~G~v~~G~l~~g~~v~i~p~~~---~~~V~~i~~~~~~v~~a~~G~~v~l~l~~-~~~i~~G~vl~ 632 (967)
...++...+|..|.++.|..+.+.+.+. ..++.|++.++.++.++..|.-|+|.+.+ ..+++.||+|-
T Consensus 463 ~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~~~~~~gd~ie 534 (537)
T 3izy_P 463 KKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIEFKVGDAII 534 (537)
T ss_dssp CCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSCSSCSCCCEEE
T ss_pred ccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcCcccCCCCCCEEE
Confidence 1226788899999999999999999885 56888999999999999999999999998 88999999874
No 317
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.30 E-value=0.074 Score=57.31 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
+...++|+|..|||||||++.|++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3456899999999999999999974
No 318
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.19 E-value=0.047 Score=54.90 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=46.4
Q ss_pred CCceEEEeeChhh-HHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc-CCCeEEEEEecCCccC
Q psy3751 402 PKRKFIIADTPGH-EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL-RIKHIIIAVNKMDLIN 478 (967)
Q Consensus 402 ~~~~~~liDtpG~-~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~-~~~~iivviNK~D~~~ 478 (967)
..+.+.++|||+. ... .+...+..+|.+|+++.+.. .-...+...+..+..+ +.+ +.+|+|++|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-------~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-------LALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-------HHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-------hhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 3567999999986 332 23344578999999999876 4444555566666654 455 788999998653
No 319
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.18 E-value=0.21 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+.-.++++|..|||||||++.|.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345699999999999999999987
No 320
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=94.53 E-value=0.11 Score=60.90 Aligned_cols=73 Identities=26% Similarity=0.296 Sum_probs=63.3
Q ss_pred EeecCCCccCCCceEEEEEEEeeeecCCCEEEEecCC-cEEEEEEEEeCccccceeecCCeEEEEEccc---cCCCCCcc
Q psy3751 555 LVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSG-KKATIKDIQMLNKSLDMAITGQSVTLIIKEY---LDISRGNM 630 (967)
Q Consensus 555 ~v~~~~~~~~~~~~v~~G~v~~G~l~~g~~v~i~p~~-~~~~V~~i~~~~~~v~~a~~G~~v~l~l~~~---~~i~~G~v 630 (967)
.+|+... + .++..+|..|.++.|..|.+ +.+ ...+|.||+.++.+++++..|+-|+|.+.+. .+++.||+
T Consensus 472 ~~f~~~~-~----~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~~~~d~ 545 (594)
T 1g7s_A 472 LVFRQSK-P----AIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIHEGDT 545 (594)
T ss_dssp EEEECSS-S----EEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTBCTTCE
T ss_pred eEEcCCC-C----eEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCCCCCCE
Confidence 5787653 3 67888999999999999998 665 5679999999999999999999999999874 68999999
Q ss_pred ccc
Q psy3751 631 LVS 633 (967)
Q Consensus 631 l~~ 633 (967)
|-.
T Consensus 546 ~~~ 548 (594)
T 1g7s_A 546 LYV 548 (594)
T ss_dssp EEE
T ss_pred EEE
Confidence 866
No 321
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.21 E-value=0.012 Score=62.70 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|++|+|||||+|.|++
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHhcc
Confidence 689999999999999999987
No 322
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.11 E-value=0.024 Score=55.43 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.+++++|++|+|||||++.|.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999873
No 323
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.07 E-value=0.2 Score=53.57 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=42.0
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHc----CCCeEEEEEecCCc
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL----RIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~----~~~~iivviNK~D~ 476 (967)
+.+.++|||||+.... ..+...+..+|.+|+|+.+.. .-...+...+..+..+ +++.+-+|+||.+.
T Consensus 155 ~~yD~ViiD~p~~~~~-~~~~~~l~~aD~viiv~~~~~-------~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVC-GGFAAPLQHADQAVVVTANDF-------DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCC-GGGGGGGGTCSEEEEEECSSH-------HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccch-HHHHHHHHHCCEEEEEecCcH-------HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 3578999999884321 112345678999999998765 3233444445555543 33423488999984
No 324
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.42 E-value=0.032 Score=55.57 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHhHHHh
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
..++++|+.|||||||++.|++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999987
No 325
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.29 E-value=0.038 Score=54.08 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 326
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.02 E-value=0.13 Score=58.84 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
...+|+++|.+||||||+..+|..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 327
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.75 E-value=0.062 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+...|+|+|++|||||||++.|.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999986
No 328
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.49 E-value=0.056 Score=54.19 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999873
No 329
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.42 E-value=0.076 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHhc
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.-.|+++|.+|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999999874
No 330
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.38 E-value=0.06 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHhHHHhc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
-.++++|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999873
No 331
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.30 E-value=0.06 Score=52.91 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHhHHHh
Q psy3751 327 FITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~ 346 (967)
++++|+.|||||||++.|++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999999986
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.28 E-value=0.075 Score=53.32 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
+...|+|+|..|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999874
No 333
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.14 E-value=0.066 Score=58.25 Aligned_cols=23 Identities=39% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHhHHHhcc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
.++++|++|+|||||+|.|++..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999743
No 334
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.08 E-value=0.062 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
-++++|++|||||||++.+..
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 489999999999999998664
No 335
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.07 E-value=0.068 Score=54.12 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|+.|||||||++.|.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999987
No 336
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=91.90 E-value=0.52 Score=52.52 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHh
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
..+..-|+|+|..++|||+|+|.|+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHH
Confidence 34677899999999999999998764
No 337
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.85 E-value=0.076 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
+---++|+|+.|||||||++.|.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3446999999999999999999873
No 338
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.83 E-value=0.079 Score=50.50 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|+.|||||||++.|.+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 339
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.80 E-value=0.077 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
..|+++|.+|||||||.+.|.+..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999987544
No 340
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.78 E-value=0.096 Score=51.78 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.-|+|+|++|+|||||+++|+..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999863
No 341
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.63 E-value=0.076 Score=54.43 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999873
No 342
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.58 E-value=0.081 Score=53.76 Aligned_cols=21 Identities=33% Similarity=0.279 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|+.|||||||++.|.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 343
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.57 E-value=2.9 Score=45.30 Aligned_cols=84 Identities=11% Similarity=0.047 Sum_probs=57.5
Q ss_pred CCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccCc----CHHHHHHHHHHHHHHHHHcCCccc
Q psy3751 428 ADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINY----NQIFYKRIVYAYKKFAEDIHFQNI 503 (967)
Q Consensus 428 aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~~----~~~~~~~i~~~~~~~~~~~~~~~~ 503 (967)
.+.+++|.-+.. .....+++.+..++..|++..-+|+|++..... -..+.+.-...++++.+.++....
T Consensus 237 ~~~~vlV~~p~~-------~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l 309 (349)
T 3ug7_A 237 RTAFRLVVIPEE-------MSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVI 309 (349)
T ss_dssp TEEEEEEECSSH-------HHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEE
T ss_pred CceEEEEECCCc-------cHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 467888888776 566778888888999999987889999975421 112222223445566666665555
Q ss_pred eEEeccccCCCcccc
Q psy3751 504 NTIPISALNGDNIIS 518 (967)
Q Consensus 504 ~ii~iSa~~g~gi~~ 518 (967)
-.+|.....-.|++.
T Consensus 310 ~~iPl~~~e~~g~~~ 324 (349)
T 3ug7_A 310 AYVPLLRTEAKGIET 324 (349)
T ss_dssp EEEECCSSCSCSHHH
T ss_pred EEecCCCCCCCCHHH
Confidence 667877777777776
No 344
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.33 E-value=0.12 Score=49.92 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
...|+++|.+|||||||.+.|.+..|
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 34699999999999999999976433
No 345
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.22 E-value=0.12 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHhcc
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
..-|+++|++|||||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458999999999999999998754
No 346
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.15 E-value=0.096 Score=52.11 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKN 350 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~ 350 (967)
+...|+++|.+|||||||++.|.+..|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3456999999999999999999875443
No 347
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.07 E-value=0.1 Score=55.45 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHhHHHh
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
-.++|+|++|+|||||++.|++
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3599999999999999999987
No 348
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.05 E-value=0.1 Score=53.65 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
-.++++|+.|||||||++.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 349
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.98 E-value=0.1 Score=53.48 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|+.|||||||++.|.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 350
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.96 E-value=0.31 Score=49.68 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=48.5
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~ 478 (967)
.+.+.++|+|+... ..+...+..+|.+|+|+.+.. .....+...+..+...+.+.+-+|+||.|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-------~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI-------SCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH-------HHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCc-------ccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 46799999988433 234455688999999998876 44445566666666678777888999998643
No 351
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.93 E-value=0.12 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
..|+++|.+|||||||++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999874
No 352
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.89 E-value=0.1 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999873
No 353
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.89 E-value=1 Score=53.01 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=32.7
Q ss_pred CEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 429 DAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 429 D~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
+.+++|+.+.. .....+...+..+...|++..-+|+|+++..
T Consensus 199 t~vvlV~~~~~-------~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQK-------STLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCH-------HHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCc-------cHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 47899988876 5566777777788888887777889999754
No 354
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.84 E-value=0.11 Score=53.01 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|+.|||||||++.|.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999987
No 355
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.82 E-value=0.1 Score=52.28 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|+.|||||||++.|.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999987
No 356
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=90.79 E-value=0.36 Score=50.10 Aligned_cols=66 Identities=17% Similarity=0.368 Sum_probs=47.3
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCcc
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~ 477 (967)
.+.+.|||+|+... ..+...+..+|.+|+|+.+.. .....+...+..+...+.+.+-+|+|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-------~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEI-------SSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSH-------HHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCCh-------hHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 56799999997433 334445678999999998765 3344555566666666777777899999864
No 357
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.76 E-value=0.12 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHhHHHh
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
-.++++|++|||||||++.|++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3599999999999999999986
No 358
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.76 E-value=0.11 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.217 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 359
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.76 E-value=0.1 Score=54.53 Aligned_cols=22 Identities=32% Similarity=0.208 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999873
No 360
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.74 E-value=0.1 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.063 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999873
No 361
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.74 E-value=0.13 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHh
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
...++++|..|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999986
No 362
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.68 E-value=0.12 Score=50.88 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|.+|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999976
No 363
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.64 E-value=0.11 Score=54.13 Aligned_cols=22 Identities=32% Similarity=0.234 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999873
No 364
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.63 E-value=0.11 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|+.|+|||||++.|.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 489999999999999999987
No 365
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.59 E-value=0.12 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.125 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 366
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.57 E-value=0.11 Score=54.20 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|+.|||||||++.|.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.52 E-value=0.073 Score=51.51 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|..|||||||++.|++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 368
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.43 E-value=0.12 Score=53.25 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999873
No 369
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.36 E-value=0.12 Score=55.17 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy3751 326 RFITAGSVDDGKSTLIGRLL 345 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~ 345 (967)
.++++|++|+|||||+|.|+
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 370
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.35 E-value=0.13 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999873
No 371
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.33 E-value=0.14 Score=53.08 Aligned_cols=21 Identities=33% Similarity=0.126 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|+.|||||||++.|.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999997
No 372
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.30 E-value=0.15 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
.+|+|+|.+||||||+.+.|.+..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987544
No 373
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.29 E-value=0.16 Score=54.28 Aligned_cols=25 Identities=36% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHh
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
++...|+|+|+.|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456799999999999999999987
No 374
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.26 E-value=0.14 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhcc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
....|+++|.+|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44569999999999999999998643
No 375
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.23 E-value=0.13 Score=53.08 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|+.|||||||++.|.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 489999999999999999987
No 376
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.21 E-value=0.13 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.079 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHhHHHhcc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
.|+++|.+||||||+.+.|....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 377
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.20 E-value=0.13 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4899999999999999999873
No 378
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.17 E-value=0.15 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
.+|+|+|.+||||||+.+.|.+ .|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC
Confidence 3699999999999999999987 44
No 379
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.14 E-value=0.13 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 380
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.13 E-value=0.12 Score=55.24 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|++|+|||||+|.|.+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 4899999999999999999874
No 381
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.02 E-value=0.15 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
+.|+++|.+||||||+.+.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 36899999999999999999 6444
No 382
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.93 E-value=0.15 Score=53.26 Aligned_cols=21 Identities=33% Similarity=0.252 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|+.|||||||++.|.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999987
No 383
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.89 E-value=0.16 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=22.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
...|+++|.+||||||+.+.|....+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999986443
No 384
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.85 E-value=0.15 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.128 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 385
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.82 E-value=0.26 Score=50.63 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=47.6
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCC
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D 475 (967)
..+.+.+||||+.-.. .+...+..+|.+|+|+.+.. .-..........+..++++.+.+|+||.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-------~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNL-------NSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSH-------HHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCH-------HHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 4678999999884432 23344578999999999876 33344555556677788877889999998
No 386
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.79 E-value=0.15 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999873
No 387
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.76 E-value=0.2 Score=49.78 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=24.6
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccCC
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKN 350 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~~ 350 (967)
......|+++|.+||||||+.+.|....+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 344568999999999999999999875553
No 388
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.76 E-value=0.16 Score=52.29 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=22.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKN 350 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~ 350 (967)
...|+++|.+|||||||++.|....|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999954443
No 389
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.72 E-value=0.15 Score=53.26 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|+.|||||||++.|.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 489999999999999999987
No 390
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.64 E-value=0.15 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999873
No 391
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.63 E-value=0.15 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccC
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
.|+++|.+||||||+.+.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999987443
No 392
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.61 E-value=0.72 Score=49.00 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=18.3
Q ss_pred EEEEecCCCChHHHHhHHHh
Q psy3751 327 FITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~ 346 (967)
+.+.|++|+|||||..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999975
No 393
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.57 E-value=0.18 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHh
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
...++++|..|||||||+.+|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999986
No 394
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.55 E-value=0.19 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHhHHHh
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 395
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.54 E-value=0.19 Score=50.14 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKN 350 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~ 350 (967)
+.|+++|.+||||||+.+.|.+ .|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 4699999999999999999976 443
No 396
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.52 E-value=0.17 Score=50.88 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.2
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKN 350 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~ 350 (967)
++|+++|.+||||||+...|....+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36999999999999999999775553
No 397
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.51 E-value=0.15 Score=51.19 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKN 350 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~ 350 (967)
++|++.|.+||||||+.+.|....+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36999999999999999999765543
No 398
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.51 E-value=0.17 Score=50.32 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=22.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
...|+|+|.+|||||||.+.|....+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999987544
No 399
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.48 E-value=0.17 Score=49.55 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHhHHHhc
Q psy3751 327 FITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~~ 347 (967)
|+|+|+.|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999863
No 400
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.47 E-value=0.17 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
..+|+++|.+||||||+...|....+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34799999999999999999987544
No 401
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.45 E-value=0.22 Score=48.90 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
...|+++|.+||||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999976433
No 402
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.42 E-value=0.23 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
++...|+|+|.+|||||||++.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34467999999999999999999874
No 403
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.41 E-value=1.1 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=20.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
...-|+++|.+||||||+..+|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999976
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.39 E-value=0.21 Score=53.48 Aligned_cols=27 Identities=33% Similarity=0.071 Sum_probs=23.1
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.+..+-|+|+|.+|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998763
No 405
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.29 E-value=0.16 Score=54.98 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|++|||||||++.|++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 499999999999999999987
No 406
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.29 E-value=0.21 Score=51.49 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
+...|+|+|..|||||||++.|.+..|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 335699999999999999999987544
No 407
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.27 E-value=0.22 Score=52.68 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHh
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
++...|+|+|.+|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998876
No 408
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.21 E-value=0.22 Score=49.37 Aligned_cols=24 Identities=29% Similarity=0.136 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+...|+++|.+|||||||.+.|.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999976
No 409
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=89.08 E-value=0.56 Score=48.70 Aligned_cols=68 Identities=7% Similarity=0.036 Sum_probs=45.6
Q ss_pred CCceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCc
Q psy3751 402 PKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL 476 (967)
Q Consensus 402 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~ 476 (967)
+.+.++|||||+...........+..+|.+|+|+.+.. .....+...+..++..+++.+-+|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-------~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-------LTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-------CCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-------chHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 45789999999843221111112236899999998876 444556666666777788744489999884
No 410
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.05 E-value=0.12 Score=55.09 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|++.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5999999999999999999873
No 411
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.01 E-value=0.18 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999873
No 412
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.94 E-value=0.19 Score=53.11 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|+.|||||||++.|.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999987
No 413
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.94 E-value=0.17 Score=55.42 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|.+|||||||++.|++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999999987
No 414
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.87 E-value=0.2 Score=54.68 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|++|||||||++.|++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
No 415
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.85 E-value=0.21 Score=50.70 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
...|+++|.+||||||+.+.|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999987655
No 416
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.76 E-value=0.13 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=15.4
Q ss_pred eEEEEEecCCCChHHHHhHHH-hc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLL-FD 347 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~-~~ 347 (967)
..++++|+.|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999998 63
No 417
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.75 E-value=0.2 Score=50.63 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
+.++|+++|.+||||||+.+.|....+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999987544
No 418
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.69 E-value=0.26 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.4
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999876
No 419
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.68 E-value=0.2 Score=50.68 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|++|||||||++.|++
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 420
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.64 E-value=0.2 Score=48.89 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
..+|+++|.+||||||+...|....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999986544
No 421
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.63 E-value=0.25 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.104 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhcc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
..|++.|.+||||||+.+.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999997643
No 422
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.59 E-value=0.24 Score=48.35 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHhc
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
..+|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 423
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.57 E-value=0.25 Score=48.98 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=22.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHhcc
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
...|+++|.+||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
No 424
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.56 E-value=0.28 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
....|+++|..|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999876
No 425
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.52 E-value=0.23 Score=49.23 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=23.9
Q ss_pred CCCeeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 321 ~~~~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
....+.|+++|.+||||||+.+.|....+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456899999999999999999986544
No 426
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.51 E-value=0.23 Score=51.04 Aligned_cols=28 Identities=25% Similarity=0.131 Sum_probs=23.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
++.++|++.|.+||||||+...|....+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999986444
No 427
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.40 E-value=0.24 Score=51.28 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccCC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSKN 350 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~~ 350 (967)
...|+|+|..|||||||++.|....|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357999999999999999999865553
No 428
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.37 E-value=0.21 Score=54.36 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|+.|||||||++.|.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 489999999999999999987
No 429
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.31 E-value=0.28 Score=52.48 Aligned_cols=25 Identities=36% Similarity=0.122 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
....|+|+|..|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999873
No 430
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.21 E-value=0.3 Score=47.68 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+...|+++|.+||||||+...|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 446799999999999999999875
No 431
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.15 E-value=0.26 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHhHHHhcc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
..|+++|.+||||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999998744
No 432
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.13 E-value=0.22 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|++|||||||++.|+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 389999999999999999883
No 433
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.08 E-value=0.26 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.055 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
....|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999975
No 434
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.07 E-value=0.24 Score=48.59 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
...|+++|.+||||||+...|....+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999976544
No 435
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.02 E-value=0.21 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHhHHHh
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
..++++|++|+|||||+.++.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999986
No 436
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.01 E-value=0.22 Score=46.91 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|.+|+|||||++.+.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 437
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.00 E-value=0.21 Score=57.29 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+++++|++|||||||+++|++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999999987
No 438
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.97 E-value=0.2 Score=55.15 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhcc
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
-+++|+|..|||||||++.|.+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998743
No 439
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.89 E-value=0.26 Score=48.50 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
+...|+++|.+||||||+.+.|....+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999986544
No 440
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.86 E-value=0.24 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHhHHHh
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
-.++++|++|||||||++.|++
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999986
No 441
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.82 E-value=2 Score=46.10 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHcCCccceEEeccccCC
Q psy3751 484 YKRIVYAYKKFAEDIHFQNINTIPISALNG 513 (967)
Q Consensus 484 ~~~i~~~~~~~~~~~~~~~~~ii~iSa~~g 513 (967)
..++...++.+.+++++ +++.+|-++.
T Consensus 181 i~~isr~LK~lAkel~v---pVi~lsQl~R 207 (338)
T 4a1f_A 181 IAEISRELKTLARELEI---PIIALVQLNR 207 (338)
T ss_dssp HHHHHHHHHHHHHHHTS---CEEEEEECCG
T ss_pred HHHHHHHHHHHHHHcCC---eEEEEEecCc
Confidence 46677888888888887 8898887664
No 442
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.77 E-value=0.28 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
+...|++.|.+||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999753
No 443
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.77 E-value=0.28 Score=48.01 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
..|++.|.+||||||+.+.|....+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999976443
No 444
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.71 E-value=0.25 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHhHHHhccC
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
+|++.|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999986443
No 445
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.66 E-value=0.25 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3899999999999999999873
No 446
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=87.50 E-value=0.74 Score=48.50 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=50.8
Q ss_pred CceEEEeeChhhHHHHHHHHhhcccCCEEEEEEeCCCCCCCCCCCchhhHHHHHHHHHHcCCCeEEEEEecCCccC
Q psy3751 403 KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478 (967)
Q Consensus 403 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~~~~~~~~g~~~~t~~~~~~~~~~~~~~iivviNK~D~~~ 478 (967)
.+.++|||||..-.... ....+..+|.+|+|+.+.. .......+.+..+...|.+.+-+|+||+|.-.
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-------~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-------NTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-------SBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-------CcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 35699999998543322 2233467999999999987 56667777778888888887788999998653
No 447
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.44 E-value=0.32 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHh
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999976
No 448
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.43 E-value=0.32 Score=48.49 Aligned_cols=25 Identities=20% Similarity=-0.004 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
..|++.|.+||||||+.+.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999986443
No 449
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.42 E-value=0.29 Score=49.06 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
++|+++|.+||||||+.+.|....+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999987544
No 450
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.30 E-value=0.32 Score=50.30 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=23.4
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
...+.|+|.|.+||||||+.+.|....+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999977555
No 451
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.29 E-value=0.24 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHhHHHhccC
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
+|+|+|.+||||||+...|....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999987544
No 452
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.22 E-value=0.27 Score=53.41 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3899999999999999999873
No 453
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.14 E-value=0.31 Score=49.58 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
++..-|+|+|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34467999999999999999999875
No 454
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.13 E-value=0.27 Score=54.79 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++|+|++|||||||+++|++
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999987
No 455
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.01 E-value=0.29 Score=47.48 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHhcc
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
..+|+++|.+||||||+...|....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999997643
No 456
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.95 E-value=0.28 Score=53.36 Aligned_cols=22 Identities=23% Similarity=-0.005 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4899999999999999999873
No 457
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.85 E-value=0.28 Score=49.55 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.2
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
..|+++|.+||||||+.+.|....+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987655
No 458
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.82 E-value=0.29 Score=53.58 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3899999999999999999873
No 459
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=86.75 E-value=2.5 Score=42.48 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=17.6
Q ss_pred eEEEEEecCCCChHHHHhHHHh
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.-+.+.|.+|+||||++-.++.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3477789999999998776664
No 460
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.73 E-value=0.3 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4899999999999999999873
No 461
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.65 E-value=0.39 Score=46.99 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
..|+++|.+||||||+.+.|....+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999986544
No 462
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.49 E-value=0.3 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
++|+++|.+||||||+.+.|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976544
No 463
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.47 E-value=0.31 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 3899999999999999999873
No 464
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.43 E-value=0.36 Score=47.30 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 465
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.34 E-value=0.32 Score=53.24 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4899999999999999999873
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.33 E-value=0.32 Score=48.47 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.3
Q ss_pred eEEEEEecCCCChHHHHhHHHhccCC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSKN 350 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~~ 350 (967)
++|+++|.|||||+|....|....+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 46899999999999999999876543
No 467
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.27 E-value=0.41 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.029 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHh
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 468
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.25 E-value=0.28 Score=47.65 Aligned_cols=25 Identities=16% Similarity=0.008 Sum_probs=17.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
..|++.|.+||||||+.+.|....+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5699999999999999999976544
No 469
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.18 E-value=0.36 Score=46.85 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHhcc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
-.+|+|..|+|||||+.+|....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998743
No 470
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.14 E-value=0.42 Score=50.47 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhcc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
....|+++|.+|||||||...|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998643
No 471
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.12 E-value=0.19 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 472
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.02 E-value=0.35 Score=47.67 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
...|+++|.+||||||+.+.|....+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987554
No 473
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.92 E-value=1.8 Score=46.83 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
-+.|.|.+++|||||+.++..
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999985
No 474
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.91 E-value=0.33 Score=50.23 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.3
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhcc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDS 348 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~ 348 (967)
....|+++|.+||||||+...|....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 44679999999999999999998643
No 475
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.85 E-value=0.4 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHh
Q psy3751 324 LLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 324 ~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 476
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.82 E-value=0.36 Score=46.20 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHhHHHhccC
Q psy3751 325 LRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 325 ~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
-+|++.|.+||||||+...|....|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976544
No 477
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.62 E-value=0.37 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHhHHHhccC
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
.|+++|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976433
No 478
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.52 E-value=0.37 Score=48.92 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
..+.|+|.|.+||||||+.+.|....+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 347899999999999999999986554
No 479
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.41 E-value=0.41 Score=48.79 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
...+|+++|.+||||||+...|....+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999987554
No 480
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=85.33 E-value=0.39 Score=52.89 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|+.|||||||++.|.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 489999999999999999987
No 481
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.23 E-value=0.44 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.132 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 482
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=85.11 E-value=0.27 Score=53.29 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4899999999999999999873
No 483
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.96 E-value=0.49 Score=46.54 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=23.8
Q ss_pred CCeeEEEEEecCCCChHHHHhHHHhccC
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
.....|+++|.+||||||+.+.|....|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999987533
No 484
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.94 E-value=0.38 Score=49.77 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHhHHHhccC
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
.|+|+|.+|||||||...|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 489999999999999999986443
No 485
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.92 E-value=2 Score=46.57 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.+.|.|.+++|||||+.++..
T Consensus 63 iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998875
No 486
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=84.89 E-value=0.37 Score=49.69 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHhHHHhccC
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
+|+++|.+||||||+.+.|....+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 599999999999999999987554
No 487
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.80 E-value=0.35 Score=47.03 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHhHHHhccC
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
+|+++|.+||||||+...|....|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999976444
No 488
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.71 E-value=0.37 Score=46.21 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHhHHHhccC
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFDSK 349 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~~~ 349 (967)
.|+++|.+||||||+.+.|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999986544
No 489
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.65 E-value=0.41 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++|+|+.|||||||++.|++.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4999999999999999999873
No 490
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.58 E-value=0.48 Score=47.36 Aligned_cols=24 Identities=33% Similarity=0.242 Sum_probs=21.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHHh
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~ 346 (967)
....|+++|.+||||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999875
No 491
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=84.53 E-value=0.45 Score=49.89 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHhHHHhc
Q psy3751 327 FITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~~ 347 (967)
++++|++|+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
No 492
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=84.35 E-value=0.52 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.2
Q ss_pred CCeeEEEEEecCCCChHHHHhHHH
Q psy3751 322 HSLLRFITAGSVDDGKSTLIGRLL 345 (967)
Q Consensus 322 ~~~~~v~ivG~~~~GKSTLi~~L~ 345 (967)
+...||.++|..+||||||+.+|-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999999873
No 493
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.32 E-value=0.5 Score=44.34 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.2
Q ss_pred EEEEecCCCChHHHHhHHHh
Q psy3751 327 FITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~ 346 (967)
.+|+|+.|+|||||+.+|..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999975
No 494
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.32 E-value=0.58 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.0
Q ss_pred CeeEEEEEecCCCChHHHHhHHH
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLL 345 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~ 345 (967)
..+.|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 495
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.24 E-value=8.4 Score=40.92 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=18.3
Q ss_pred EEEEecCCCChHHHHhHHHh
Q psy3751 327 FITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 327 v~ivG~~~~GKSTLi~~L~~ 346 (967)
+.|.|.+|+|||||+-.+..
T Consensus 71 ~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 88899999999999998875
No 496
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=83.80 E-value=0.27 Score=53.45 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHhc
Q psy3751 326 RFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
.++++|+.|||||||++.|.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999873
No 497
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.65 E-value=0.66 Score=46.57 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=22.6
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhccCC
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFDSKN 350 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~~~~ 350 (967)
+...|.++|.|||||+|....|....+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3445788999999999999999876553
No 498
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=83.61 E-value=0.56 Score=50.92 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
+++|+|..|+|||||++.|.+
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999987
No 499
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.59 E-value=0.52 Score=47.59 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHhHHHh
Q psy3751 326 RFITAGSVDDGKSTLIGRLLF 346 (967)
Q Consensus 326 ~v~ivG~~~~GKSTLi~~L~~ 346 (967)
.++++|++|+|||||+..|..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999985
No 500
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.41 E-value=0.73 Score=46.78 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCChHHHHhHHHhc
Q psy3751 323 SLLRFITAGSVDDGKSTLIGRLLFD 347 (967)
Q Consensus 323 ~~~~v~ivG~~~~GKSTLi~~L~~~ 347 (967)
....|++.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999864
Done!