RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3751
(967 letters)
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 596 bits (1538), Expect = 0.0
Identities = 200/426 (46%), Positives = 282/426 (66%), Gaps = 13/426 (3%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
++ +LRF+T G+VDDGKSTLIGRLL DSK I+ D L+A++R K +G ++DL+LL
Sbjct: 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLV 79
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
DGL++EREQGITIDVAYRYF+T KRKFIIADTPGHEQYTRNM TGAST D IIL+DA
Sbjct: 80 DGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY 139
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ TQT+RHS IA LL IKHI++A+NKMDL +++ ++ I Y KFAE I
Sbjct: 140 -------GVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIA 192
Query: 500 FQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVA 557
F+ + +P+SAL GDN+++ S WY G +L+ +LE++ + LRFPVQ V
Sbjct: 193 FKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVN 252
Query: 558 RHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTL 617
R + +FRG+ G + SGI+ K D ++V PSGK + +K I L+ A GQ+VTL
Sbjct: 253 RP----NLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTL 308
Query: 618 IIKEYLDISRGNMLVSPFKRPVSLRSINANLCWLSEESLDLRRKYLLKHSTNQILSRILK 677
+++ +DISRG++LV P + +A L W++EE + +KY +K +T+ + I
Sbjct: 309 TMEDEIDISRGDLLVHADNVPQVSDAFDAMLVWMAEEPMLPGKKYDIKRATSYVPGSIAS 368
Query: 678 INALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVA 737
I +++NT + P L LN+IG V +++ PI++D Y + R+TG+FI+ID +T TVA
Sbjct: 369 ITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGTVA 428
Query: 738 AVYIIG 743
A II
Sbjct: 429 AGMIIA 434
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 374 bits (961), Expect = e-122
Identities = 134/296 (45%), Positives = 189/296 (63%), Gaps = 6/296 (2%)
Query: 18 YLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGH 77
+L LE+E+IHI+REV+AE +NPV+L+S GKDS V+L LA KAF P + PFP++H+DT
Sbjct: 27 HLKQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 86
Query: 78 NFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFK 137
F E+ FRD + ++G LI D + +G + + ++ L + + +
Sbjct: 87 KFQEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHG 146
Query: 138 FDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPIS 197
FDA GGARRDEEK+RAKER++SFRD +W+PK+QRPELWN+YN V+ GE+IRVFP+S
Sbjct: 147 FDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLS 206
Query: 198 NWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIP-----FTNLTPAHPGEIIENLM 252
NWTELDIWQYI E I + LYFA +R +I++ G LI I
Sbjct: 207 NWTELDIWQYIYLEGIPIVPLYFAAERDVIEKNGTLIMIDDERILEHLTDEEKSRIVKKK 266
Query: 253 VRFRTVGDILCTCPILSNATTVEDIIKEISVTQITERGATRIDDQNSEASMEKRKK 308
VRFRT+G T + S AT++ DII+E+ +T+ +ER R+ D + SME++K+
Sbjct: 267 VRFRTLGCYPLTGAVESEATSLTDIIQEMLLTRTSERQG-RVIDHDGAGSMEEKKR 321
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 266 bits (681), Expect = 1e-79
Identities = 122/471 (25%), Positives = 204/471 (43%), Gaps = 32/471 (6%)
Query: 284 TQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGR 343
+ + +E + + + + + K K+H + FI G VD GKSTL G
Sbjct: 5 AALKKAAEAAEPATVTEDATDLQNEVDQELLKDMYGKEHVNIVFI--GHVDAGKSTLGGN 62
Query: 344 LLFDSKNIFIDQLDAVSRTKYKRV---MSGHNIDLSLLTDGLESEREQGITIDVAYRYFN 400
+LF + + D + K +R + LS D ERE+G T++V YF
Sbjct: 63 ILFLTGMV-----DKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE 117
Query: 401 TPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAH 460
T R+F + D PGH+ Y NMI GAS AD +++I A + +F QT+ H+++A
Sbjct: 118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR 177
Query: 461 LLRIKHIIIAVNKMDL--INYNQIFYKRIVYAYKKFAEDIHFQNINT----IPISALNGD 514
I H+++ +NKMD + +++ YK V F + N T +P+SA G
Sbjct: 178 TQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ 237
Query: 515 NII--SASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHISKDFRGYMG 572
N+ S+ WY GP+L+ L+S+ E+ P P+ + G I G
Sbjct: 238 NVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYKDLGTIL------EG 291
Query: 573 RIESGIIKKNDCLIVEPSGKKATIKDIQ-MLNKSLDMAITGQSVTLIIK-EYLDISRGNM 630
+IE+G IKKN ++V P + + I ++ + +I G V L ++ + D+ G +
Sbjct: 292 KIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYV 351
Query: 631 LVSPFKRPVSLRSINANLCWLSEESLDLRRKY--LLKHSTNQILSRILKINALLNINTQK 688
L S + A + L E L Y ++ T K+ L+ +K
Sbjct: 352 LTSTKNPVHATTRFIAQIAIL-ELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRK 410
Query: 689 WC-PPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVAA 738
PP + P+ ++ +++ + G F L D+ TVA
Sbjct: 411 SKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQ--GTTVAV 459
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 261 bits (669), Expect = 1e-77
Identities = 123/494 (24%), Positives = 201/494 (40%), Gaps = 75/494 (15%)
Query: 295 DDQNSEASMEKRKKTEAPEKKQSVF------KKHSLLRFITAGSVDDGKSTLIGRLLFDS 348
D++ + + T+ P+K + H + G VD GKSTL+GRLL+D
Sbjct: 1 DEKTVQRYYKTTVPTK-PKKPHDISAFVKSALPHLSFVVL--GHVDAGKSTLMGRLLYDL 57
Query: 349 KNIFIDQLDAVSRT--KYKR--------------VMSGHNIDLSLLTDGLESEREQGITI 392
+ +Q K +R +M D ERE+G+T+
Sbjct: 58 NIV--NQ-----SQLRKLQRESETMGKSSFKFAWIM-----------DQTNEERERGVTV 99
Query: 393 DVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT 452
+ +F+T + F I D PGH + N I G S AD I+ +D S F +L QT
Sbjct: 100 SICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT 159
Query: 453 KRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQ--NINTIPISA 510
K H ++A L I ++IIA+NKMD ++++Q ++ I + DI F NIN +PIS
Sbjct: 160 KEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISG 219
Query: 511 LNGDNII---SASNNMLWYNGPTLISLLESLNTNEKID------KKPLRFPVQLVARHCG 561
+G+ + WYNGP L+S LE+ + P F V +
Sbjct: 220 FSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKK 279
Query: 562 HISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLN--------KSLDMAITGQ 613
S D G++ESG I+ + L + PS + + IQ+ + + D+AI G
Sbjct: 280 -TSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGD 338
Query: 614 SVTLIIK--EYLDISRGNMLVSPFKRPVSL-RSINANLCWLSEESLDLRRKY--LLKHST 668
VTL ++ DI G++ S + + L L +L
Sbjct: 339 FVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRP-LLPGTPFILFIGV 397
Query: 669 NQILSRILKINALLNINTQKWC-PPKLLDLNDIGCVTINIYE---PISVDSYDNIRSTGS 724
+ +RI ++ + ++ + L V I + E I + + G
Sbjct: 398 KEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGR 457
Query: 725 FILIDEITFQTVAA 738
+L + +T+AA
Sbjct: 458 VVLRKD--GRTIAA 469
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 258 bits (662), Expect = 3e-77
Identities = 140/434 (32%), Positives = 215/434 (49%), Gaps = 31/434 (7%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRV---MSGHNIDLS 376
K H L I G VD GKSTL+GRLL D I D + + + + + +
Sbjct: 4 KPHLNLIVI--GHVDHGKSTLVGRLLMDRGFI-----DEKTVKEAEEAAKKLGKESEKFA 56
Query: 377 LLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILID 436
L D L+ ERE+G+TI++ + F T K F I D PGH + +NMITGAS ADA I+++
Sbjct: 57 FLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVS 116
Query: 437 ASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI--NYNQIFYKRIVYAYKKF 494
A K ++ +++ QT+ H I+A + + +I+AVNKMDL Y++ YK IV KF
Sbjct: 117 AKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF 176
Query: 495 AEDIHFQ--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFP 552
F + +P+ A +GDNI S NM WYNGPTL L+ L K KPLR P
Sbjct: 177 MRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIP 236
Query: 553 VQLVARHCGHISKDFRGY--MGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAI 610
+Q V G G +GR+ESG++K D ++ P+GK ++ I+ + +D A
Sbjct: 237 IQDVYSISG------VGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAE 290
Query: 611 TGQSVTLIIK--EYLDISRGNMLVSPFKRPVSLRSINANLCWLSEESLDLRRKY--LLKH 666
G ++ ++ E DI RG+++ P P A + + + L Y +L
Sbjct: 291 PGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHPTA-LANGYTPVLHV 349
Query: 667 STNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGS 724
T + R+ ++ + L+ T + P+ L D+ V +P+ V+ Y+ G
Sbjct: 350 HTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGR 409
Query: 725 FILIDEITFQTVAA 738
F + D +TV
Sbjct: 410 FAMRDM--GKTVGV 421
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 263 bits (673), Expect = 5e-77
Identities = 125/514 (24%), Positives = 199/514 (38%), Gaps = 71/514 (13%)
Query: 269 SNATTVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKKHSLLRFI 328
E + E+ R +K A K H +
Sbjct: 117 DWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSA---LPHLSFVVL 173
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRT--KYKR--------------VMSGHN 372
G VD GKSTL+GRLL+D + +Q K +R +M
Sbjct: 174 --GHVDAGKSTLMGRLLYDLNIV--NQ-----SQLRKLQRESETMGKSSFKFAWIM---- 220
Query: 373 IDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVI 432
D ERE+G+T+ + +F+T + F I D PGH + N I G S AD I
Sbjct: 221 -------DQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAI 273
Query: 433 ILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYK 492
+ +D S F +L QTK H ++A L I ++IIA+NKMD ++++Q ++ I
Sbjct: 274 LCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLL 333
Query: 493 KFAEDIHFQ--NINTIPISALNGDNII---SASNNMLWYNGPTLISLLESLNTNEKID-- 545
+ DI F NIN +PIS +G+ + WYNGP L+S LE+ +
Sbjct: 334 PYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENE 393
Query: 546 ----KKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQM 601
P F V + S D G++ESG I+ + L + PS + + IQ+
Sbjct: 394 GINKDDPFLFSVLEIIPSKK-TSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV 452
Query: 602 LN--------KSLDMAITGQSVTLIIK--EYLDISRGNMLVSPFKRPVSL-RSINANLCW 650
+ + D+AI G VTL ++ DI G++ S + + L
Sbjct: 453 GSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTT 512
Query: 651 LSEESLDLRRKY--LLKHSTNQILSRILKINALLNINTQKWC-PPKLLDLNDIGCVTINI 707
L +L + +RI ++ + ++ + L V I +
Sbjct: 513 FDMNRP-LLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIEL 571
Query: 708 YE---PISVDSYDNIRSTGSFILIDEITFQTVAA 738
E I + + G +L + +T+AA
Sbjct: 572 IEVKRWIPLLTAHENDRLGRVVLRKD--GRTIAA 603
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 251 bits (643), Expect = 5e-73
Identities = 119/505 (23%), Positives = 209/505 (41%), Gaps = 72/505 (14%)
Query: 266 PILSNATTVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAPEKKQSVFKKHSLL 325
L+ + + + + + + + +QS K L
Sbjct: 121 LSLNKNDEPAFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKPVVHL 180
Query: 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRT--KYKR--------------VMS 369
G VD GKST++GR++F+ I + R+ K ++
Sbjct: 181 VVT--GHVDSGKSTMLGRIMFELGEI--NS-----RSMQKLHNEAANSGKGSFSYAWLL- 230
Query: 370 GHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTAD 429
D E ER +G+T+DVA F + K+ + I D PGH + MI GAS+AD
Sbjct: 231 ----------DTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSAD 280
Query: 430 AVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIV- 488
++++D+S+ F QT+ H+ + L I I+++VNK+DL+++++ ++ I
Sbjct: 281 FAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKN 340
Query: 489 ----YAYKKF---AEDIHFQNINTIPISALNGDNII--SASNNMLWYNGPTLISLLESLN 539
+ K ++HF +PISA++G N+I +S+ WY GPTL+S L+ L
Sbjct: 341 IVSDFLIKMVGFKTSNVHF-----VPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395
Query: 540 TNEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDI 599
EK +KPLR + V R ++ GR+E+G ++ N L S + A +K++
Sbjct: 396 PPEKPYRKPLRLSIDDVYRSPRSVT-----VTGRVEAGNVQVNQVLYDVSSQEDAYVKNV 450
Query: 600 QM-LNKSLDMAITGQSVTLIIK--EYLDISRGNMLVSPFKRPVSLRSINANLCWLSEESL 656
+ S A+ G +VTL + E + G++L + +RS A +
Sbjct: 451 IRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDIHGP 510
Query: 657 DLRRKY--LLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEP-ISV 713
+ +L + KI + N + + V I+ + +
Sbjct: 511 -ILSGSTLVLHLGRTVTSVSL-KIVTVNNKR------SRHIASRKRALVRISFLDGLFPL 562
Query: 714 DSYDNIRSTGSFILIDEITFQTVAA 738
+ + G FIL TVAA
Sbjct: 563 CLAEECPALGRFILRRS--GDTVAA 585
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 247 bits (632), Expect = 8e-73
Identities = 127/445 (28%), Positives = 211/445 (47%), Gaps = 42/445 (9%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRV---MSGHNIDLS 376
K H + I G VD GKST G L++ I D + K+++ + + +
Sbjct: 5 KSHINVVVI--GHVDSGKSTTTGHLIYKCGGI-----DKRTIEKFEKEAAELGKGSFKYA 57
Query: 377 LLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILID 436
+ D L++ERE+GITID+A F TPK + + D PGH + +NMITG S AD I++I
Sbjct: 58 WVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIA 117
Query: 437 ASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAE 496
+F ++ QT+ H+++A L ++ +I+AVNKMD + +++ ++ IV F +
Sbjct: 118 GGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIK 177
Query: 497 DIHFQ--NINTIPISALNGDNIISASNNMLWY------------NGPTLISLLESLNTNE 542
+ + + +PIS NGDN+I A+ N WY G TL+ ++++
Sbjct: 178 KVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPS 237
Query: 543 KIDKKPLRFPVQLVARHCGHISKDFRG--YMGRIESGIIKKNDCLIVEPSGKKATIKDIQ 600
+ KPLR P+Q V + G G +GR+E+G+IK + P+G +K ++
Sbjct: 238 RPTDKPLRLPLQDVYKIGG------IGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVE 291
Query: 601 MLNKSLDMAITGQSVTLIIK--EYLDISRGNMLVSPFKRPVS-LRSINANLCWLSEESLD 657
M ++ L+ + G +V +K +I RGN+ P S NA + L+
Sbjct: 292 MHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQ- 350
Query: 658 LRRKY--LLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPISV 713
+ Y +L T I R ++ + + K PK L D V +P+ V
Sbjct: 351 ISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCV 410
Query: 714 DSYDNIRSTGSFILIDEITFQTVAA 738
+++ G F + D QTVA
Sbjct: 411 EAFSEYPPLGRFAVRDM--RQTVAV 433
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: c.90.1.1
Length = 235
Score = 226 bits (578), Expect = 5e-68
Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 7/223 (3%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIA 798
VY++GAG G + +T++ R+L A+VVL+D L+ +L L + + VGK
Sbjct: 5 VYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALAK-GELVPVGKEGYGGKTP 63
Query: 799 QYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAAS 858
Q I ++ A + +V RLKGGDPM+FGR EE AL++ I +V+PG+T+A+ A S
Sbjct: 64 QEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALS 123
Query: 859 ESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFL 918
LT R ++RS + T ++ +P +DTLV M + + ++LL+ F
Sbjct: 124 ALGLPLTHRGLARSFAVATG-----HDPALPLPRADTLVLLMPLHTLGGLKERLLE-RFP 177
Query: 919 PTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGK 961
P TP+ ++ + + + DL P L ++GK
Sbjct: 178 PETPLALLARVGWPGEAVRLGRVEDLPGLGEGLPSPALLVVGK 220
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 232 bits (594), Expect = 2e-67
Identities = 85/226 (37%), Positives = 129/226 (57%), Gaps = 3/226 (1%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPK-AKHIFVGKRFKKHSI 797
V ++GAGPG A L+T++G + +++AD+V+YD L++++++ L + A +FVGKR H +
Sbjct: 218 VVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCV 277
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
Q IN+I+++ A K VVRLKGGDP +FGR EEL L I V+PGITAA +
Sbjct: 278 PQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCS 337
Query: 858 SESKQSLTKRNISRSVVLFTSSTMLKN--NYLKNIPISDTLVEYMGGNNIFLTAKKLLKL 915
+ S LT R+ ++SV L T ++ TLV YMG N +KL+
Sbjct: 338 AYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIAF 397
Query: 916 GFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGK 961
G PV +VEN + Q++ +L L + Q E P L ++G+
Sbjct: 398 GMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGR 443
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH;
2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Length = 294
Score = 223 bits (571), Expect = 3e-66
Identities = 84/232 (36%), Positives = 134/232 (57%), Gaps = 11/232 (4%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPK-AKHIFVGKRFKKHSI 797
V ++GAGPG L+T+R LL++A+VV+YD L+ EL+ L P+ + I+VGKR HS+
Sbjct: 27 VALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSL 86
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
Q IN ++V+ A + VVRLKGGDP +FGR EEL L + + +V+PG+TAA +
Sbjct: 87 PQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCS 146
Query: 858 SESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIP------ISDTLVEYMGGNNIFLTAKK 911
+ + LT R++++S T L+N+ ++ TLV YMG N+ A +
Sbjct: 147 TYAGIPLTHRDLAQSCTFVTGH--LQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAAR 204
Query: 912 LLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGK 961
L++ G TP +V + + Q++TR L +L +Q + P L ++G+
Sbjct: 205 LVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQ 256
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis,
cobalamin, SAM, SAH, uroporphyrin methyltransferase;
HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP:
c.90.1.1
Length = 280
Score = 221 bits (565), Expect = 1e-65
Identities = 72/231 (31%), Positives = 111/231 (48%), Gaps = 10/231 (4%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPK-AKHIFVGKRFKKHSI 797
V+++GAGPG L+T+ A LR+ADV+++DAL+ + L L A F GKR K S
Sbjct: 17 VWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKPSP 76
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
Q I+ +V+ A N V+RLKGGDP +FGR EE L ++ + +++PGITA +
Sbjct: 77 KQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGL 136
Query: 858 SESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIP------ISDTLVEYMGGNNIFLTAKK 911
+ + +T R ++ +V T I S +V YM +I
Sbjct: 137 AYAGIPVTHREVNHAVTFLTGHDS-SGLVPDRINWQGIASGSPVIVMYMAMKHIGAITAN 195
Query: 912 LLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIG 960
L+ G P PV V N + Q + L + + E P + ++G
Sbjct: 196 LIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVG 246
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.97A
{Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Length = 239
Score = 218 bits (559), Expect = 2e-65
Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 11/226 (4%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIA 798
VY++GAGPG +L+T++ RLL++A VVLYD L+ +L L P + ++VGK + S
Sbjct: 3 VYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLALAP-GEKVYVGKE-EGESEK 60
Query: 799 QYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAAS 858
Q I+R++++ A + VVRLKGGDPM+FGR EE+ L ++ + V+V+PG+T+ LA+
Sbjct: 61 QEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLASGL 120
Query: 859 ESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPI---SDTLVEYMGGNNIFLTAKKLLKL 915
LT R ++ + +L+ ++ TLV MG AK+LL+L
Sbjct: 121 ----PLTHRGLAHGFAAVSG--VLEGGGYPDLRPFARVPTLVVLMGVGRRVWIAKELLRL 174
Query: 916 GFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGK 961
G P P + VE S ++ L ++ + + P L+++G+
Sbjct: 175 GRDPREPTLFVERASTPKERRVHARLEEVAEGKVEVRPPALWILGE 220
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.49A
{Clostridium difficile}
Length = 253
Score = 200 bits (511), Expect = 1e-58
Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 12/241 (4%)
Query: 734 QTVAAVYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRF 792
+ V+ +GAGPG +LIT++G +LL ADVV+Y +L+ ELL C + +
Sbjct: 2 NAMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKED-----CQIH 56
Query: 793 KKHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITA 852
+ I ++ + VVRL+ GD ++G E++ L K NI PG+++
Sbjct: 57 NSAHMDLQEIIDVMREGIENNKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCTPGVSS 116
Query: 853 ALAAASESKQSLTKRNISRSVVLFTSST---MLKNNYLKNI-PISDTLVEYMGGNNIFLT 908
L AAS T IS+SV++ + + +++ ++V ++ I
Sbjct: 117 FLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSYAKHQTSMVIFLSVQEIEKV 176
Query: 909 AKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLKSH 966
KLL+ G+ TP+ V+ + +++KI + L D+ K+ K L M+G+ L
Sbjct: 177 VSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMVGRFLGEE 236
Query: 967 Y 967
Y
Sbjct: 237 Y 237
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase,
cobalamin biosynth methyltransferase; HET: SAH; 2.40A
{Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Length = 285
Score = 196 bits (501), Expect = 8e-57
Identities = 63/233 (27%), Positives = 122/233 (52%), Gaps = 12/233 (5%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSI 797
+YIIGAGPG DLITV+G +LL++ADVVLY D+L++ +L+ + K +
Sbjct: 23 LYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPG-----AEVLKTAGM 77
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
+ ++ + +VVR+ GDP ++G E++ LK+ + ++++PG+T+ AAA
Sbjct: 78 HLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAA 137
Query: 858 SESKQSLTKRNISRSVVLFTSST---MLKNNYLKNI-PISDTLVEYMGGNNIFLTAKKLL 913
+ ++ LT +++++V+L + + + L ++ T+ ++ K+ +
Sbjct: 138 AAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKKVMKEFI 197
Query: 914 KLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLK 964
G+ TPV+VV + ++KI R + DL + K + + G +L
Sbjct: 198 NAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWALD 250
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 195 bits (498), Expect = 1e-56
Identities = 65/237 (27%), Positives = 108/237 (45%), Gaps = 17/237 (7%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPK-AKHIFVGKRFKKHS 796
V+ IGAGPGAADLIT+RG L+ V LY +L+ LL CP AK +
Sbjct: 6 VHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPM----- 60
Query: 797 IAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAA 856
+ I I + V RL GD ++ E+L L+ NI V PG+ + AA
Sbjct: 61 -SLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAA 119
Query: 857 ASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISD------TLVEYMGGNNIFLTAK 910
A+ LT +++SV+ T ++ + + + L ++ + + +
Sbjct: 120 AATLGAELTLPGVAQSVI-LTRTSGRASAMPAGETLENFARTGAVLAIHLSVHVLDEVVQ 178
Query: 911 KLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI-FQFEKPVLFMIGKSLKSH 966
KL+ + PV +V S +Q++ R L L+ + + E+ L ++G+SL +
Sbjct: 179 KLVP-HYGEDCPVAIVWRASWPDQRVVRATLATLQTSLGAELERTALILVGRSLATE 234
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole,
S-adenosylmethi transferase; HET: SAH; 2.00A
{Chlorobaculum tepidum} PDB: 2e0k_A*
Length = 259
Score = 167 bits (426), Expect = 6e-47
Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 22/217 (10%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLC---------------PKA 783
+ + GPG LITV+ LR+ADV+ Y ++ + +
Sbjct: 7 IISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRG 66
Query: 784 KHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIK 843
+ + + + + + V + GD + + ++ +
Sbjct: 67 MLVPMSRSRGAAEASYAANYASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDGLD 126
Query: 844 VKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGN 903
+ PGI A +AA S + L ++ VL + + + T+V
Sbjct: 127 CSMTPGIPAFIAAGSAAGMPLALQS---DSVLVLAQIDEIGELERALVTHSTVVVMKLST 183
Query: 904 NIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLI 940
L + P + E ++ + IT +
Sbjct: 184 VRDELVSFLERYA----KPFLYAEKVGMAGEFITMEV 216
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 232
Score = 151 bits (383), Expect = 2e-41
Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 22/221 (9%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDAL----------ITNELLMLCPKAKHIF- 787
+ +G GPG ++L+T+R +LR V+ I ++L I
Sbjct: 5 LIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILD 64
Query: 788 ----VGKRFKKHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIK 843
+ + R++ V + GDP ++ ++ K
Sbjct: 65 PVFPMTDDRDELESHWDSAARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFK 124
Query: 844 VKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGN 903
+++PG+T+ A A+ + ++L + + VV + + + + + D V
Sbjct: 125 TEMVPGVTSFTACAATAGRTLVEGDEILLVV-----PRVDDRFERVLRDVDACVIMKTSR 179
Query: 904 NIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDL 944
+ + + V+ V NCS+ ++ + R
Sbjct: 180 HGRRAMEVVESDP--RGKDVVSVANCSMDDEVVERGFASGG 218
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 145 bits (367), Expect = 4e-37
Identities = 84/427 (19%), Positives = 145/427 (33%), Gaps = 83/427 (19%)
Query: 320 KKHSLLRFI---TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLS 376
+ H + I G +D GK+TL L T+ + S
Sbjct: 12 RPHMDFKNINLGIFGHIDHGKTTLSKVL-----------------TE---IASTSAH--- 48
Query: 377 LLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILID 436
D L +++GITID+ + F + + D PGH R +++ A D +I++D
Sbjct: 49 ---DKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVD 105
Query: 437 ASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI-----FYKRIVYAY 491
A + TQT H +I I I+ + K D +I K I+ +
Sbjct: 106 AKE-------GPKTQTGEHMLILDHFNIPI-IVVITKSDNAGTEEIKRTEMIMKSILQST 157
Query: 492 KKFAED-IHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDK---K 547
I IPISA G + L +L+ + N +I +
Sbjct: 158 HNLKNSSI-------IPISAKTGFGV------------DELKNLIITTLNNAEIIRNTES 198
Query: 548 PLRFPVQLVARHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKS 605
+ P+ H I G + G I GI+K D L V P ++ IQ +S
Sbjct: 199 YFKMPLD----HAFPIKG--AGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKES 252
Query: 606 LDMAITGQSVTL----IIKEYLDISRGNMLVSPFKRPVSLRSINANLCWLSEESLDLRRK 661
+ A G V + + + I RG +L S + ++ I A + +L K
Sbjct: 253 VMEAKAGDRVGMAIQGVDAK--QIYRGXILTSKDTKLQTVDKIVAKIKISDIFKYNLTPK 310
Query: 662 YLLK--HSTNQILSRILKINALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYD-- 717
+ + + + + T++ + + + E + + D
Sbjct: 311 MKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRV 370
Query: 718 NIRSTGS 724
I
Sbjct: 371 LITRLDL 377
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 138 bits (350), Expect = 8e-37
Identities = 43/233 (18%), Positives = 84/233 (36%), Gaps = 14/233 (6%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDA----LITNELLMLCPKAKHIFVGKRFKK 794
+ +G G I+V+G +R+AD V + L+++ M K + +R
Sbjct: 15 LTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSSIEEMEEFFGKRVVELERSDL 74
Query: 795 HSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAAL 854
+ +I R K VV L GDPM+ ++ +K ++I G + +
Sbjct: 75 EENSFRLIERA------KSKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASIST 128
Query: 855 AAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLV---EYMGGNNIFLTAKK 911
A + + S +V S T + + TL+ + I +
Sbjct: 129 AVCGLTGLHNYRFGKSATVSWHRSQTPVNVIKANRSIDAHTLLFLDLHPEPMTIGHAVEN 188
Query: 912 LLKL-GFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSL 963
L+ + + + + + L +LKK F V+ ++ K+L
Sbjct: 189 LIAEDAQMKDLYAVGIARAGSGEEVVKCDRLENLKKIDFGKPLHVMVVLAKTL 241
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine,
transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii}
PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A*
2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A*
2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A*
...
Length = 265
Score = 137 bits (346), Expect = 3e-36
Identities = 42/242 (17%), Positives = 77/242 (31%), Gaps = 22/242 (9%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFK--KHS 796
+Y IG G ITV+G + +K D V + T+ + +GK +
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFY-TSLMAGTTLGRIQRLIGKEIRVLSRE 61
Query: 797 IAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAA 856
+ I++ A + + V L GDP++ E K+ ++ VI + +A
Sbjct: 62 DVELNFENIVLPLAKEND-VAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIY-SA 119
Query: 857 ASESKQSLTKRNISRSVVLFTSSTMLKNNYLK-----------------NIPISDTLVEY 899
+ + K S +V + + Y +
Sbjct: 120 VGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTAN 179
Query: 900 MGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMI 959
+ F T V+V+ N I + DL ++ F +L +
Sbjct: 180 EAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVP 239
Query: 960 GK 961
GK
Sbjct: 240 GK 241
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 139 bits (353), Expect = 5e-36
Identities = 53/326 (16%), Positives = 104/326 (31%), Gaps = 72/326 (22%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
++ S L+ R S + + + T + ++
Sbjct: 3 SSHHHHHHSSGLVPRG---SHMANVAIIGTEKSGR---------------TSLAANLGKK 44
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
G + D+ + R + D + + +++IT + +D ++ I +
Sbjct: 45 GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPPQGLD--A---- 98
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFY-----KRIVYAYKKFAEDIHFQNI 503
T I LL KH IIA+ + D + + I K I Q+
Sbjct: 99 --HTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSGTV-------LQDW 149
Query: 504 NTIPISALNGDNIISASNNMLWYNGPTLISLLESLNT-----NEKIDKKPLRFPVQLVAR 558
I ++ A N L + + + N +++ P R +
Sbjct: 150 ECISLNTNKS-----AKNPFEG--VDELKARINEVAEKIEAENAELNSLPARIFIDHA-- 200
Query: 559 HCGHISKDF----RGYM--GRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITG 612
F +G + G ++ GI K D + P + I+ IQ + +D A G
Sbjct: 201 --------FNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAG 252
Query: 613 QSVTL----IIKEYLDISRGNMLVSP 634
V + + + DI RG ++
Sbjct: 253 TRVGMRLKNVQAK--DIERGFIISDK 276
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin,
methyltransferase, transfera; HET: SAH; 2.22A
{Rhodobacter capsulatus}
Length = 251
Score = 130 bits (330), Expect = 3e-34
Identities = 43/234 (18%), Positives = 88/234 (37%), Gaps = 20/234 (8%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKAD-VVLYDALITNELLMLCPKAKHIFVGKRFKKHSI 797
V + G GPG DL+T L +A +V Y + + A + + +
Sbjct: 11 VTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYV--ARI-----APREGLTLHPTDNRV 63
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKY----NIKVKVIPGITAA 853
++ A + VV + GDP +F AL+ + +++++PGITA
Sbjct: 64 ELDRA-THALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAM 122
Query: 854 LAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISD-TLVEYMG----GNNIFLT 908
LAAA+ + L + ++ + L++ D + Y + F
Sbjct: 123 LAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAMAFYNPRSKSRPHQFTR 182
Query: 909 AKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKS 962
++L+ P ++ + Q I+ + L D + + + ++G +
Sbjct: 183 VLEILREECEPGRLILFARAVTTPEQAISVVELRDATPE--MADMRTVVLVGNA 234
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SAH; 2.00A {Thermus
thermophilus} PDB: 2zvc_A*
Length = 295
Score = 130 bits (330), Expect = 9e-34
Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 37/252 (14%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIA 798
++++G GPG +T R L A+VV+ + L + + GK + +
Sbjct: 4 LFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYVKLL-----EEMGLLAGKEVVRKGMT 58
Query: 799 QYI-INRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYN---------------- 841
+ + ++ A V + GGDP ++G L +++
Sbjct: 59 EELDRAEEALERALSGQRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAG 118
Query: 842 ----IKVKVIPGITAALAAASESKQSLTKRN--ISRSVVLFTSSTMLKNNYLKNIPISD- 894
+ + VIPG+TAA A AS L IS S +L + + L D
Sbjct: 119 EEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDLLTPWPLIERR--LHAAGQGDF 176
Query: 895 TLVEYMGGNNI----FLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQ 950
+V Y + + ++L TP +V++ Q++ L L++ +
Sbjct: 177 VVVLYNPQSKRRDWQLRKSAEILLEYRPKETPAALVKSAYRKRQEVALTTLEGLREA--E 234
Query: 951 FEKPVLFMIGKS 962
+IG
Sbjct: 235 AGMLTTVVIGNR 246
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 124 bits (314), Expect = 1e-32
Identities = 42/211 (19%), Positives = 70/211 (33%), Gaps = 37/211 (17%)
Query: 16 NLYLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDT 75
N L+ L++E + + VL S G + V L L + P++ DT
Sbjct: 24 NAELEKLDAEGR-VAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPD----IPVILTDT 78
Query: 76 GHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSIT------- 128
G+ FPE F D KL L V +S R K +
Sbjct: 79 GYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEP 138
Query: 129 LLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPG 188
+ +KE G RR++ +RA + + +
Sbjct: 139 MNRALKELNAQTWFAGLRREQSGSRANLPVLAIQ-------------------------R 173
Query: 189 ENIRVFPISNWTELDIWQYIEREKIILPSLY 219
+V PI +W I+QY+++ + L+
Sbjct: 174 GVFKVLPIIDWDNRTIYQYLQKHGLKYHPLW 204
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD,
struc genomics, SAM, S-adenosylmethionine, MCSG; HET:
MSE SAM; 1.60A {Corynebacterium diphtheriae}
Length = 251
Score = 121 bits (304), Expect = 8e-31
Identities = 38/236 (16%), Positives = 76/236 (32%), Gaps = 39/236 (16%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY-----------------------DALITNE 775
+Y+IG G G+ + +T++ LR A ++ I
Sbjct: 5 IYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAV 64
Query: 776 LLMLCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTD---E 832
+ + + + H+ +++ I + V L GDP L+ T E
Sbjct: 65 TDPERDRNPDNYEEEVRRWHAERAHLLASTIRERTPDDGAVAFLVWGDPSLYDSTLRIIE 124
Query: 833 ELNALKKYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPI 892
+ L+ + VKVIPGITA +E + + + T+ L K+
Sbjct: 125 HMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIG---EAIHITTGRNLPETSAKD--- 178
Query: 893 SDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI 948
V + G + T + Q + + + ++ ++
Sbjct: 179 RRNCVVMLDGKTAWQDVAT-------EHTYMWWGAFLGTEQQVLRKGYVHEIGAQV 227
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 121 bits (305), Expect = 1e-30
Identities = 47/261 (18%), Positives = 84/261 (32%), Gaps = 43/261 (16%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDAL----ITNELLMLCPKAKHIFVGKRFKK 794
+YIIG G ITVRG ++ D+V + + + K + +G R
Sbjct: 23 LYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEFYGKKVIIGDRDLV 82
Query: 795 HSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAAL 854
+ A I++ A N V L GD + +K I+VKVI +
Sbjct: 83 ETEAD-----QILEPAKTKN-VALLVVGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMN 136
Query: 855 AAASESKQSLTKRNISRSVVLFT---SSTMLKNNYLKNIPISDTLVEYMGGNN------- 904
A S L + + SV ++ + N + + +
Sbjct: 137 AIGC-SGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKINRDNNMHTLVLLDIKVKERSEES 195
Query: 905 ---------------IFLTAKKLLKL-------GFLPTTPVIVVENCSLSNQKITRLILL 942
I ++LL++ + T V+ + + ++QKI +
Sbjct: 196 IIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKIVYGKMK 255
Query: 943 DLKKKIFQFEKPVLFMIGKSL 963
DL F L + +
Sbjct: 256 DLLHYDFGAPMHCLLIPAPQV 276
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS
reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 116 bits (293), Expect = 3e-29
Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 36/215 (16%)
Query: 16 NLYLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDT 75
N L LE+ I+ + + G +V + + K + ++ IDT
Sbjct: 21 NEQLIKLET-PQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLS-EKYYMPELLFIDT 78
Query: 76 GHNFPEVISFRDNCISKLGETLIVR----------SVEDSIMKGTVRLRKPNTDSRNAAQ 125
H+FP+ ++ ++ K + S D K L + + D +
Sbjct: 79 LHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLA 138
Query: 126 SI-TLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTR 184
+ KE A G R+ + AR++ I + G
Sbjct: 139 KVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDELNGI----------------- 181
Query: 185 VHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219
+++ P+ NWT + QYI+ + L
Sbjct: 182 ------LKINPLINWTFEQVKQYIDANNVPYNELL 210
>1wde_A Probable diphthine synthase; structural genomics, conserved
hypothetical protein, riken S genomics/proteomics
initiative, RSGI, transferase; 2.00A {Aeropyrum pernix}
SCOP: c.90.1.1
Length = 294
Score = 117 bits (294), Expect = 3e-29
Identities = 33/245 (13%), Positives = 71/245 (28%), Gaps = 24/245 (9%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPK-AKHIFVGKRFKKHSI 797
+ ++G G T+ +R+ADVV ++ L + + +
Sbjct: 10 LLLVGWGYAPGM-QTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRR 68
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
+R IV A V + GDPM+ + + V+ IPG++ AA
Sbjct: 69 DLEERSREIVSRALDAV-VAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAAR 127
Query: 858 SESKQSLTKRNISRSVVLFTSSTMLKNNY----------------LKNIPISDTLVEYMG 901
+ S + + ++ + L L G
Sbjct: 128 GATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQG 187
Query: 902 GNNIFLTAKKLLKLGFLP-----TTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVL 956
+ + ++ + P V+V ++ + L L + +
Sbjct: 188 VSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYSI 247
Query: 957 FMIGK 961
+ +
Sbjct: 248 VIPAR 252
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 113 bits (284), Expect = 4e-28
Identities = 39/203 (19%), Positives = 64/203 (31%), Gaps = 37/203 (18%)
Query: 25 EAIHIMREVSAE-CNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVI 83
+A + VL S G + V L L + P++ DTG+ FPE
Sbjct: 32 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPD----IPVILTDTGYLFPETY 87
Query: 84 SFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSIT-------LLETIKEF 136
F D KL L V +S R K + + +KE
Sbjct: 88 RFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKEL 147
Query: 137 KFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPI 196
G RR++ +RA + + + +V PI
Sbjct: 148 NAQTWFAGLRREQSGSRANLPVLAIQR-------------------------GVFKVLPI 182
Query: 197 SNWTELDIWQYIEREKIILPSLY 219
+W I+QY+++ + L+
Sbjct: 183 IDWDNRTIYQYLQKHGLKYHPLW 205
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase,
transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Length = 275
Score = 109 bits (274), Expect = 1e-26
Identities = 45/237 (18%), Positives = 79/237 (33%), Gaps = 39/237 (16%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY------------------DALITN----EL 776
+ +IG G G IT + + AD++L A +TN +
Sbjct: 24 LSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVI 83
Query: 777 LMLCPKAKHIFVGKRFKK----HSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDE 832
P R +IA+ ++ I V L GDP L+ T
Sbjct: 84 DFALPVRDASNPSYRKGVDDWHDAIAETWLSEITAHVPGLEGRVALLVWGDPSLYDSTLR 143
Query: 833 ELNALK-KYNIKVKVIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIP 891
LK + + KVIPGITA A + L VV+ T + + +
Sbjct: 144 IAERLKSRLPLTTKVIPGITAIQALCAAHAIPLNDIG--APVVITTGRQLRDHGWPAG-- 199
Query: 892 ISDTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI 948
++T+V + G F + + ++ + + R + ++ +I
Sbjct: 200 -TETVVAMLDGECSFQSLPP-------DGLTIFWGACVAMPEEVLIRGPVAEVTDEI 248
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 105 bits (261), Expect = 1e-24
Identities = 32/220 (14%), Positives = 59/220 (26%), Gaps = 58/220 (26%)
Query: 22 LESEAIHIMREVSAE----CNNPVLLFSGGKDSVVLLRLAEKAFRPSRF----------- 66
+ +++ E+ ++GGKD VLL L F
Sbjct: 34 IRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFE 93
Query: 67 -------PFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTD 119
P V ID FP + +F + +L + +
Sbjct: 94 FQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRD--- 150
Query: 120 SRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWN 179
++ E + A + G R + A + D P
Sbjct: 151 ---------FIKIYPETE--AIVIGIRHTDPFGEALK-PIQRTDS---NWPDF------- 188
Query: 180 LYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLY 219
+R+ P+ +W +IW ++ + LY
Sbjct: 189 -----------MRLQPLLHWDLTNIWSFLLYSNEPICGLY 217
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 98.9 bits (245), Expect = 1e-22
Identities = 38/287 (13%), Positives = 67/287 (23%), Gaps = 67/287 (23%)
Query: 22 LESEAIHIMREV----SAECNNPVLLFSGGKDSVVLLRLAEKAF---------------- 61
+ + ++ E S ++GGKD VLL L
Sbjct: 39 INTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGK 98
Query: 62 --RPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTD 119
R P V ID F + +F + + +L +
Sbjct: 99 FHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAE--------- 149
Query: 120 SRNAAQSITLLETIKEFK-FDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELW 178
++ F A + G R + + + W
Sbjct: 150 --------AFETFLQVFPETKAIVIGIRHTDPFGE---HLKPIQKTDANW---------- 188
Query: 179 NLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKII-----KRKGLL 233
+ R+ P+ +W +IW ++ + LY + L
Sbjct: 189 ---------PDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHL 239
Query: 234 IPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVEDIIKE 280
N TP E PI + + E
Sbjct: 240 RKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHE 286
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 98.5 bits (246), Expect = 6e-22
Identities = 81/360 (22%), Positives = 123/360 (34%), Gaps = 113/360 (31%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
G VD GK++L A++ TD E +
Sbjct: 13 MVGHVDHGKTSLTK---------------ALTGV---------------WTDRHSEELRR 42
Query: 389 GITIDVAYRYFNTPK-----------------------RKFIIADTPGHEQYTRNMITGA 425
GI+I + Y K R+ D+PGHE M++GA
Sbjct: 43 GISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGA 102
Query: 426 STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF-- 483
S D I++I A++ P QTK H + +L I III NK+DL++ Q
Sbjct: 103 SLMDGAILVIAANEPCPQP------QTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEEN 156
Query: 484 YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTN-- 541
Y++I K+F + +N IPISA + NI LL+++
Sbjct: 157 YEQI----KEFVKGTIAENAPIIPISAHHEANI---------------DVLLKAIQDFIP 197
Query: 542 --EKIDKKPLRFPVQLV----ARHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSGK- 592
++ R V G KD +G + G I G+ K D + + P K
Sbjct: 198 TPKRDPDATPRMYVARSFDINKP--GTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKV 255
Query: 593 -----------KATIKDIQMLNKSLDMAITGQSV---TLII----KEYLDISRGNMLVSP 634
I + N L A G + T + K D G+++ P
Sbjct: 256 TEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKS--DALTGSVVGLP 313
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 96.9 bits (242), Expect = 2e-21
Identities = 82/360 (22%), Positives = 131/360 (36%), Gaps = 113/360 (31%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
G VD GK+TL A++ TD E +
Sbjct: 15 MVGHVDHGKTTLTK---------------ALTGV---------------WTDTHSEELRR 44
Query: 389 GITIDVAY------------RYFNTPK-----------RKFIIADTPGHEQYTRNMITGA 425
GITI + + RY +P R+ D PGHE M+ GA
Sbjct: 45 GITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGA 104
Query: 426 STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF-- 483
S D I++I A++ P QT+ H + ++ K+IIIA NK++L++ +
Sbjct: 105 SLMDGAILVIAANEPCPRP------QTREHLMALQIIGQKNIIIAQNKIELVDKEKALEN 158
Query: 484 YKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTN-- 541
Y++I K+F E +N IPISAL+G NI L++++
Sbjct: 159 YRQI----KEFIEGTVAENAPIIPISALHGANI---------------DVLVKAIEDFIP 199
Query: 542 --EKIDKKPLRFPVQLV----ARHCGHISKDFRGYM--GRIESGIIKKND------CLIV 587
++ KP + V G + G + G I G +K D +
Sbjct: 200 TPKRDPNKPPKMLVLRSFDVNKP--GTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPY 257
Query: 588 EPSGK------KATIKDIQMLNKSLDMAITGQSVTL-------IIKEYLDISRGNMLVSP 634
E G+ I +Q + ++ A G V + + K D+ GN++ P
Sbjct: 258 EEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKG--DLMAGNVVGKP 315
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 96.5 bits (241), Expect = 3e-21
Identities = 62/340 (18%), Positives = 121/340 (35%), Gaps = 79/340 (23%)
Query: 329 TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSL-LTDGLESERE 387
G VD GK+TL+ A++ + + ++ + +
Sbjct: 13 VVGHVDHGKTTLVQ---------------AITGIWTSKKLGYAETNIGVCESCKKPEAYV 57
Query: 388 QGITIDVAYRYFNTP-KRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSV 446
+ R+ D PGHE M++GA+ D I+++ A++ P
Sbjct: 58 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP-- 115
Query: 447 NLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF--YKRIVYAYKKFAEDIHFQNIN 504
QT+ H + ++ +K++II NK+D+++ + Y++I +F + +N+
Sbjct: 116 ----QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIK----QFTKGTWAENVP 167
Query: 505 TIPISALNGDNIISASNNMLWYNGPTLISLLESLNTN----EKIDKKPLRFPVQLVAR-- 558
IP+SAL+ NI S L+E + + + V R
Sbjct: 168 IIPVSALHKINIDS---------------LIEGIEEYIKTPYRDLSQKPVMLV---IRSF 209
Query: 559 ---HCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSGK------------KATIKDIQM 601
G + +G + G I G+ K + + V P + I I+
Sbjct: 210 DVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF 269
Query: 602 LNKSLDMAITGQSVTL-------IIKEYLDISRGNMLVSP 634
++ A G V + + K D G+++
Sbjct: 270 GDEEFKEAKPGGLVAIGTYLDPSLTKA--DNLLGSIITLA 307
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide
binding, thiosulfonate intermediate, oxidoreductase;
HET: ADX; 2.70A {Pseudomonas aeruginosa}
Length = 275
Score = 92.1 bits (228), Expect = 1e-20
Identities = 46/261 (17%), Positives = 87/261 (33%), Gaps = 52/261 (19%)
Query: 13 NLNNLYLDWLESEAIHIMREVSAECNNPVLL-FSGGKDSVVLLRLAEKAFRPSRFPFPMV 71
+L L + I++ + + + FSG +D VVL+ +A K R +
Sbjct: 29 DLPALASSLADKSPQDILKAAFEHFGDELWISFSGAED-VVLVDMAWKLNRN----VKVF 83
Query: 72 HIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLE 131
+DTG PE F D G + V S + +++ V+ + + R+ +
Sbjct: 84 SLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIR 143
Query: 132 TIKEFKFDACIGGARRDEEKARAKERIFSFRD-KFGQWNPKSQRPELWNLYNTRVHPGEN 190
I+ + G R R + + + + PE
Sbjct: 144 KIE--PLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPE-----------KPL 190
Query: 191 IRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAHPGEIIEN 250
+ P+S+ T ++W YI ++ SL+ +G
Sbjct: 191 YKFNPLSSMTSEEVWGYIRMLELPYNSLHE---------RG------------------- 222
Query: 251 LMVRFRTVGDILCTCPILSNA 271
+ ++G CT P+L N
Sbjct: 223 ----YISIGCEPCTRPVLPNQ 239
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 93.1 bits (231), Expect = 2e-19
Identities = 88/336 (26%), Positives = 144/336 (42%), Gaps = 86/336 (25%)
Query: 329 TAGSVDDGKSTL---IGRLL---FDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGL 382
T G VD GK+TL I +L + DQ+D
Sbjct: 301 TIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPE--------------------- 339
Query: 383 ESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKF 442
E+ +GITI+ ++ ++TP R + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 340 --EKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD--- 394
Query: 443 NPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF------YKRIVYAYKKFAE 496
P + QT+ H ++ + + +II+ +NK D+++ ++ + ++ Y F
Sbjct: 395 GP----MPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY-DFPG 449
Query: 497 DIHFQNINTIPI------SALNGDNIISASNNMLWYNGPTLISLLESLNTN----EKIDK 546
D PI AL GD A ++ L L++ E+
Sbjct: 450 D-------DTPIVRGSALKALEGDAEWEAK----------ILELAGFLDSYIPEPERAID 492
Query: 547 KPLRFPVQLVARHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSGKKATIK----DIQ 600
KP P++ V G RG + GR+E GIIK + VE G K T K ++
Sbjct: 493 KPFLLPIEDVFSISG------RGTVVTGRVERGIIKVGE--EVEIVGIKETQKSTCTGVE 544
Query: 601 MLNKSLDMAITGQSVTLIIK--EYLDISRGNMLVSP 634
M K LD G++V ++++ + +I RG +L P
Sbjct: 545 MFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 580
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 89.9 bits (224), Expect = 3e-19
Identities = 69/268 (25%), Positives = 128/268 (47%), Gaps = 43/268 (16%)
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
ER +GITI+ A+ ++T R + D PGH Y +NMITG + D I+++ A+ P
Sbjct: 47 ERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND---GP 103
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF------YKRIVYAYKKFAEDI 498
+ QT+ H ++A + ++H+++ VNK D + +++ + ++ + + +
Sbjct: 104 ----MPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF-GYKGE- 157
Query: 499 HFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTN----EKIDKKPLRFPVQ 554
I SAL + + L ++ LL++++T + +KP PV+
Sbjct: 158 ---ETPIIVGSALCA---LEQRDPELGL--KSVQKLLDAVDTYIPVPTRDLEKPFLLPVE 209
Query: 555 LVARHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSG----KKATIKDIQMLNKSLDM 608
V G RG + G +E GI+KK D E G + + I+M +KSLD
Sbjct: 210 SVYSIPG------RGTVVTGTLERGILKKGD--ECEFLGHSKNIRTVVTGIEMFHKSLDR 261
Query: 609 AITGQSVTLIIK--EYLDISRGNMLVSP 634
A G ++ +++ + D+ RG ++ P
Sbjct: 262 AEAGDNLGALVRGLKREDLRRGLVMAKP 289
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 89.9 bits (224), Expect = 4e-19
Identities = 71/275 (25%), Positives = 128/275 (46%), Gaps = 48/275 (17%)
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
ER +GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+ P
Sbjct: 56 ERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD---GP 112
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF------YKRIVYAYKKFAEDI 498
+ QT+ H ++A + + +I++ +NK+D+++ ++ + ++ Y +F D
Sbjct: 113 ----MPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY-EFPGD- 166
Query: 499 HFQNINTIPI------SALNGDNIISASNNMLWYNGPTLISLLESLNTN----EKIDKKP 548
+P+ AL + + + LL++++ + KP
Sbjct: 167 ------EVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKP 220
Query: 549 LRFPVQLVARHCGHISKDFRGYM--GRIESGIIKKND-CLIV--EPSGKKATIKDIQMLN 603
PV+ V G RG + GRIE G +K D IV P +K + ++M
Sbjct: 221 FLMPVEDVFTITG------RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 604 KSLDMAITGQSVTLII----KEYLDISRGNMLVSP 634
K+L I G +V +++ +E ++ RG +L P
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSRE--EVERGQVLAKP 307
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 76.2 bits (187), Expect = 4e-14
Identities = 97/640 (15%), Positives = 185/640 (28%), Gaps = 249/640 (38%)
Query: 257 TVGDILCTCPI----LSNATTVEDIIKEISVTQITERGATRIDDQNSEASMEKRKKTEAP 312
+ G + + A+ +++ + + + TE A D+ + A +
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAAD-DEPTTPAEL--------- 60
Query: 313 EKKQSVFKKHSLLRFI--TAGSVDDGKSTLIGRLL------FDS-----KNI--FIDQLD 357
+ +F+ + V+ K ++L F++ +I +L
Sbjct: 61 -----------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 358 AVSRTK-----------YK-RVMSGHNIDL---SLLTDGLESERE--------QGITIDV 394
+ T R+M+ D S L + QG T D
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD- 168
Query: 395 AYRYF-------NTPK---RKFI---------IADTPGHEQ--YTRNM-----ITGASTA 428
YF T I + T + +T+ + + S
Sbjct: 169 ---YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 429 DAVIILIDASKIKFNP-SVNL--LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYK 485
L+ P S L + Q L +Y + K
Sbjct: 226 PDKDYLLSI------PISCPLIGVIQ------------------------LAHY-VVTAK 254
Query: 486 RIVYAYKKFAEDI-----HFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNT 540
+ + + + H Q + ++A+ I+ +++ W ES
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGL----VTAV----AIAETDS--W----------ESFFV 294
Query: 541 NEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIV---EPS------G 591
+ +K + + R + + + + I++ D L PS
Sbjct: 295 S---VRKAITVLFFIGVR--CY--EAYPNT--SLPPSILE--DSLENNEGVPSPMLSISN 343
Query: 592 --KKATIKDIQMLNKSL--DMAITGQSVTLIIKEYLDISRGNMLVS-PFKRPVSLRSINA 646
++ + N L + ++L+ N++VS P P SL +N
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQV---EISLVN------GAKNLVVSGP---PQSLYGLNL 391
Query: 647 NLCWLSEESLDLRRKYLLKHSTNQILSRI------LKI-NALLNINTQKWCPP---KLLD 696
L RK +Q SRI LK N L + + P LL
Sbjct: 392 TL-----------RKAKAPSGLDQ--SRIPFSERKLKFSNRFLPVAS-----PFHSHLLV 433
Query: 697 ------LNDIGCVTINIYEP---ISV-DSYD--NIRSTGSFI---LIDEITFQTV----- 736
D+ ++ I V D++D ++R I ++D I V
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 737 ---AAVYIIGAGPGAADLITV--------RGARLLRKADV 765
A +I+ GPG A + V G R++ +
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 72.4 bits (177), Expect = 7e-13
Identities = 95/536 (17%), Positives = 171/536 (31%), Gaps = 159/536 (29%)
Query: 501 QNINTIPISALNGD----NIISASNNMLWYNGPTL----ISLLESLNTNEKIDKKPLRFP 552
+T P++ +G ++ + ++ L +L D +P P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTA---SFFIASQLQEQFNKILPEPTEGFAADDEPTT-P 57
Query: 553 VQLVARHCGHIS----KDFRGYMGRI--------ESGIIKKNDCLIVEPSGKKATIKDIQ 600
+LV + G++S G ++ E+ ++ ND I
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND---------------IH 102
Query: 601 MLNKSL--DMAITGQSVTLIIKEYLDISRGNMLVSPFKRPVS---LRSI---NANLC--- 649
L L + T +IK Y+ M PF + + R++ NA L
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITAR--IMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 650 --------WLSEESLDLRRKY-----LLK---HSTNQILSRILKINALLNINTQKWCPPK 693
+ E LR Y L+ + + LS +++ + +K +
Sbjct: 161 GGQGNTDDYFEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTL----DAEKVFT-Q 211
Query: 694 LLDLNDIGCVTINIYEPISVDSYDNIRSTG-SFILIDEITFQTVAAVYII-----GAGPG 747
L++ + + P + D + S S LI A Y++ G PG
Sbjct: 212 GLNILEW------LENPSNTPDKDYLLSIPISCPLI----GVIQLAHYVVTAKLLGFTPG 261
Query: 748 AADLIT-VRGARLLRKADVVLYDALIT------NELLMLCPKAKHI--FVGKRFKKHSIA 798
+L + ++GA +V A+ + KA + F+G R +
Sbjct: 262 --ELRSYLKGA-TGHSQGLVT--AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 799 QYIINRIIVKCAFKYNLVVRLKGGD----PML--FGRTDEELNA-LKKYNIKVKVIPGIT 851
+ I+ L+ + PML T E++ + K N
Sbjct: 317 TSLPPSILEDS---------LENNEGVPSPMLSISNLTQEQVQDYVNKTN---------- 357
Query: 852 AALAAASESKQ---SLTKRNISRSVVL--FTSSTMLKNNYLKNIPISDTLVEYMGGNNIF 906
+ KQ SL N ++++V+ S N L+ L + + I
Sbjct: 358 ---SHLPAGKQVEISL--VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ----SRIP 408
Query: 907 LTAKKL-LKLGFLP-TTPVIVVENCSLSNQKITRLILLDLKKKIFQFEK-----PV 955
+ +KL FLP +P + L + LI DL K F PV
Sbjct: 409 FSERKLKFSNRFLPVASPF----HSHL-LVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 61.2 bits (148), Expect = 2e-09
Identities = 92/555 (16%), Positives = 159/555 (28%), Gaps = 190/555 (34%)
Query: 97 LIVRSVEDSIMKG------TVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDE- 149
L + E+ ++G +L + N + + + IK + A I R +
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-----IKNY-ITARIMAKRPFDK 139
Query: 150 -------EKARAKE-RIFSFRDKF-GQWNPKSQRPELWNLYNT---RV------------ 185
++ + F GQ N EL +LY T V
Sbjct: 140 KSNSALFRAVGEGNAQLVAI---FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 186 ----HPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKR---KIIKRKGLL----- 233
+ +VF L+I +++E Y +I G++
Sbjct: 197 ELIRTTLDAEKVFTQG----LNILEWLENPSNTPDKDYLLSIPISCPLI---GVIQLAHY 249
Query: 234 IPFTNLTPAHPGEIIENLMVRFRTVGDILCTCPILSNATTVED----IIKEISV------ 283
+ L PGE+ L ++ T ++ + E + K I+V
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLV-TAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 284 -TQITERGATRIDDQNSEASMEKRKKTEAP-------EKKQSVFKKHSLLRFI--TAGSV 333
T + E S+E + +P ++Q + ++ T +
Sbjct: 309 RCYEA-YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-------VQDYVNKTNSHL 360
Query: 334 DDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITID 393
GK I L + V+SG L
Sbjct: 361 PAGKQVEIS--LVNGAKNL--------------VVSGPPQSL------------------ 386
Query: 394 VAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTK 453
Y N RK G +Q +R I S+ K S L
Sbjct: 387 --YG-LNLTLRK--AKAPSGLDQ-SR---------------IPFSERKLKFSNRFLPVAS 425
Query: 454 R-HSIIAHLLR-IKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI-SA 510
HS HLL +I DL+ N F A+DI IP+
Sbjct: 426 PFHS---HLLVPASDLINK----DLVKNNVSFN----------AKDIQ------IPVYDT 462
Query: 511 LNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFP--VQLVARHCGHISKDF- 567
+G ++ S + + E + + I + P+++ Q A H + DF
Sbjct: 463 FDGSDLRVLSGS-----------ISERI--VDCIIRLPVKWETTTQFKATHI--L--DFG 505
Query: 568 RGYMGRIESGIIKKN 582
G + + +N
Sbjct: 506 PGGASGL-GVLTHRN 519
Score = 53.9 bits (129), Expect = 3e-07
Identities = 62/335 (18%), Positives = 99/335 (29%), Gaps = 108/335 (32%)
Query: 172 SQRP----ELWNLYNTRVHPGENIRVFPISNWTELDIWQYIER-EKIILPSLYFAHKRKI 226
SQ +L Y T + D+W R + + F+ I
Sbjct: 1626 SQEQGMGMDL---YKT----------SKAAQ----DVW---NRADNHFKDTYGFS-ILDI 1664
Query: 227 IKR--KGLLIPFTNLTPAHPGEIIENLM-VRFRTVGDILCTCPILSNATTVEDIIKEI-- 281
+ L I F I EN + F T+ D E I KEI
Sbjct: 1665 VINNPVNLTIHFG---GEKGKRIRENYSAMIFETIVD---------GKLKTEKIFKEINE 1712
Query: 282 SVTQITERG------ATRIDDQN--------SEASMEK-RKKTEAPEKKQSVFKKHSL-- 324
T T R AT Q +A+ E + K P + F HSL
Sbjct: 1713 HSTSYTFRSEKGLLSAT----QFTQPALTLMEKAAFEDLKSKGLIPAD--ATFAGHSLGE 1766
Query: 325 ---LRFITAG--SVDDGKSTLI--GRLLFDSKNIFIDQLDAVSRTKYKRVMSGHN---ID 374
L A S++ + G + + D + R+ Y M N +
Sbjct: 1767 YAAL-ASLADVMSIESLVEVVFYRGMTMQVA-----VPRDELGRSNYG--MIAINPGRVA 1818
Query: 375 LSLLTDGLES-----EREQGITIDVA-YRYFNTPKRKFIIADTPGHEQYTRNMITGASTA 428
S + L+ + G +++ Y N ++QY + G A
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNY---NVE-----------NQQY---VAAGDLRA 1861
Query: 429 -DAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLL 462
D V +++ K++ + L + HL
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 45.8 bits (108), Expect = 8e-05
Identities = 50/303 (16%), Positives = 86/303 (28%), Gaps = 116/303 (38%)
Query: 623 LDISRGNMLVSPFKRPVSL---------RSINANLCWLSEESLD---LRRKYLLKHSTNQ 670
LDI N PV+L + I N + E++ L+ + + K
Sbjct: 1662 LDIVINN--------PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 671 ILSRILKI-NALLNI--NTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFIL 727
S + LL+ TQ P L + +E +++S G
Sbjct: 1714 STSYTFRSEKGLLSATQFTQ----PALT------LMEKAAFE--------DLKSKGLIPA 1755
Query: 728 ID--------EITFQTVAAVYIIGAGP--GAADLITVRGARLLRKADVVLYDALITNELL 777
E A + +++ RG ++ A V D L +
Sbjct: 1756 DATFAGHSLGEYA----ALASLADVMSIESLVEVVFYRG-MTMQVA--VPRDELGRSNYG 1808
Query: 778 M--LCPKAKHIFVGKRFKKHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEEL- 834
M + P V F + ++ QY++ R+ RT +
Sbjct: 1809 MIAINPGR----VAASFSQEAL-QYVVERVG---------------------KRTGWLVE 1842
Query: 835 --NALKKYNIKVK--VIPGITAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNI 890
N YN++ + V G AL + +L L+ I
Sbjct: 1843 IVN----YNVENQQYVAAGDLRALDTVTN---------------------VLNFIKLQKI 1877
Query: 891 PIS 893
I
Sbjct: 1878 DII 1880
Score = 43.9 bits (103), Expect = 3e-04
Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 135/308 (43%)
Query: 342 GRLLFDS----KNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYR 397
G L+ + ++++ ++ D + Y G +I L+ + + +
Sbjct: 1632 GMDLYKTSKAAQDVW-NRADNHFKDTY-----GFSI--------LDIVINNPVNLTI--- 1674
Query: 398 YFNTPKRKFIIADTPGHEQYT----RNMITGASTADAVIILID--ASKIKFNPSVNLLTQ 451
+F K K I E Y+ ++ G + + I+ ++ F LL+
Sbjct: 1675 HFGGEKGKRI------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 452 TKR------------------------------HSI--------IA---------HLLRI 464
T+ HS+ +A ++
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 465 -----------------KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIP 507
+ +IA+N R+ F+++ Q +
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPG-----------RVA---ASFSQEA-LQYVVE-R 1832
Query: 508 ISALNGDNIISASNNMLWYNGP--------------TLISLLESLNTNEKIDKKPLR--F 551
+ G ++ N YN T+ ++L + KID L+
Sbjct: 1833 VGKRTGW-LVEIVN----YNVENQQYVAAGDLRALDTVTNVLNFIKLQ-KIDIIELQKSL 1886
Query: 552 PVQLVARH 559
++ V H
Sbjct: 1887 SLEEVEGH 1894
Score = 42.7 bits (100), Expect = 7e-04
Identities = 59/329 (17%), Positives = 107/329 (32%), Gaps = 97/329 (29%)
Query: 710 PISVDSYDNIR-----STGSFILIDEI--TFQ-TVAAVYIIGAG---PGA-ADLIT---- 753
P+++ S+ ++ T SF + ++ F + A P A+L+
Sbjct: 8 PLTL-SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 754 -VRGARLLRKADVVLYDALITNELL-----MLCPKAKHIFVGKRFKKHSIAQYIINRIIV 807
V + L+ + V +D ++ L L H K +++ +I
Sbjct: 67 YV--SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI- 123
Query: 808 KCAFKYNLVVR---LKGGDPMLF-----------------GRTD---EELNAL-KKYNIK 843
K ++ + K + LF G TD EEL L + Y+
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH-- 181
Query: 844 VKVIPGITAALAAASESKQSLTKRNISRSVV----------LFTSSTMLKNNYLKNIPIS 893
+ + ++E+ L + + V L S +YL +IPIS
Sbjct: 182 ----VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 894 ------DTLVEYMGGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKI--TRLI----- 940
L Y+ +TAK LGF P ++ + +Q + I
Sbjct: 238 CPLIGVIQLAHYV------VTAK---LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 941 ---LLDLKKKIFQFEKPVLFMIGKSLKSH 966
+K VLF IG ++ +
Sbjct: 289 WESFFVSVRKAIT----VLFFIG--VRCY 311
Score = 30.4 bits (68), Expect = 3.9
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 17/82 (20%)
Query: 33 VSAECNNPVLLFSGGKDSVVLLRLAEK--AFRPSRFPFPMVHIDTGHNFPEVISFRDNCI 90
V++ ++ +L ++ L + +F P+ G + R
Sbjct: 423 VASPFHSHLL---VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD------LRVL-- 471
Query: 91 SKLGETLIVRSVEDSIMKGTVR 112
I + D I++ V+
Sbjct: 472 ----SGSISERIVDCIIRLPVK 489
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 71.1 bits (175), Expect = 5e-14
Identities = 39/202 (19%), Positives = 85/202 (42%), Gaps = 15/202 (7%)
Query: 547 KPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSL 606
P+R P+ + G + +G++ESG I K L++ P+ + I +
Sbjct: 5 SPIRLPIVDKYKDMGTVV------LGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVET 58
Query: 607 DMAITGQSVTLIIK--EYLDISRGNMLVSPFKRPVSLRSINANLCWLSEESLDLRRKY-- 662
D G+++ + +K E +I G +L P S R+ +A + + +S+ + Y
Sbjct: 59 DTVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIEHKSI-ICPGYNA 117
Query: 663 LLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLNDIGCVTINIYEPISVDSYDNIR 720
+L T I + L++ + + P+ + + + + I ++++ +
Sbjct: 118 VLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFP 177
Query: 721 STGSFILIDEITFQTVAAVYII 742
G F L DE +T+A ++
Sbjct: 178 QMGRFTLRDE--GKTIAIGKVL 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.6 bits (164), Expect = 2e-11
Identities = 88/573 (15%), Positives = 181/573 (31%), Gaps = 150/573 (26%)
Query: 474 MDL-INYNQIFYKRIVYAY-KKFAEDIHFQNINTIPISALNG---DNIISASNNM--LWY 526
MD +Q YK I+ + F ++ +++ +P S L+ D+II + + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 527 NGPTLISLLESLNTN------EKIDKKPLRF---PVQLVARHCGHISKDFRGYMGRIESG 577
L L S E++ + +F P++ R +++ + R+ +
Sbjct: 67 ----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 578 --IIKKNDCLIVEPSG--KKATIKDIQMLNKSLD-MAITGQSVTLIIKEYLDISRGNMLV 632
+ K + ++P ++A ++ N +D + +G++ + + L +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKM- 180
Query: 633 SPFK----------RPVSLRSINANLCWLSEESLDLRRKYL--LKHSTNQI---LSRILK 677
FK P ++ + L + + + R + +K + I L R+LK
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 678 I----NALL---NINTQKWCPPKLLDLNDIGC---VTINIYEPISVDSYDNIRSTGSFIL 727
N LL N+ K + ++ C +T T +
Sbjct: 240 SKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLT-----------------TRFKQV 277
Query: 728 IDEITFQTVAAVYIIGAGPGAADLITVRGARLLRK-ADVVLYD----ALITNELLM-LCP 781
D ++ T + + L LL K D D L TN + +
Sbjct: 278 TDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 782 KAKHIFVG--KRFKKHSIAQYIINRIIVKC-----------AFKYNLVV----------- 817
++ + +K + + + II F L V
Sbjct: 335 ESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTIL 391
Query: 818 ------RLKGGDPMLFGRTDEELNALKKYNIKVKV-IPGITAALAAASESKQSLTKR--- 867
+ D M+ + + ++K + + IP I L E++ +L +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 868 --NISRSVVLFTSSTMLKNNY--------LKNIPISDTLVEYMGGNNIFL----TAKKLL 913
NI ++ + Y LKNI + + + +FL +K+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF---RMVFLDFRFLEQKIR 508
Query: 914 KLGFLPTTPVIVVENCSLSNQKITRLILLDLKK 946
S+ N L LK
Sbjct: 509 HDSTAWNAS------GSILN------TLQQLKF 529
Score = 61.4 bits (148), Expect = 1e-09
Identities = 110/702 (15%), Positives = 211/702 (30%), Gaps = 218/702 (31%)
Query: 310 EAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMS 369
+ + +S+ K + I + G L LL + + ++ V R YK +MS
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 370 G---HNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYT--RNMITG 424
S++T +R+ R +N + F + + Y R +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRD---------RLYNDN-QVFAKYNVSRLQPYLKLRQALLE 146
Query: 425 ASTADAVII--LIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482
A V+I ++ + K + + + + KMD +I
Sbjct: 147 LRPAKNVLIDGVLGSGK-----TW--VA--------LDVCLSYKV---QCKMD----FKI 184
Query: 483 FYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNGPTLISLLES----- 537
F+ ++ +N N+ + ++ +L+ P S +
Sbjct: 185 FW-------------LNLKNCNSP-------ETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 538 LNTNEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIK 597
L + + LR +L+ + Y +CL+V +
Sbjct: 225 LRIHSIQAE--LR---RLLKS---------KPY-----------ENCLLV--------LL 251
Query: 598 DIQMLNKSLDMAITGQSVTLIIKEYLDISRGNMLVSPFKRPVSLRSINANLCWLSEESLD 657
++Q N A L+ + L + +SL + L +E
Sbjct: 252 NVQ--NAKAWNAFNLSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTL--TPDEVKS 305
Query: 658 LRRKYL------LKHSTNQILSRILK-INALL--NINT-QKWCPPKLLDLNDIGCVTINI 707
L KYL L R L I + + T W L I ++N+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 708 YEPISV-DSYDNIRSTGSFILIDEITFQTVAAVYIIGAGPGAADLITVRGARLLRKADVV 766
EP +D + + +I P LL +
Sbjct: 366 LEPAEYRKMFDRL-----SVFPPS--------AHI----P----------TILL----SL 394
Query: 767 LYDALITNEL-LMLCPKAKHIFVGKRFKK-----HSI---------AQYIINRIIVKCAF 811
++ +I +++ +++ K+ V K+ K+ SI +Y ++R IV
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--- 451
Query: 812 KYNLVVRLKGGD---PMLFG-------------RTDEELNALKK----YN-IKVKVIPGI 850
YN+ D P L E + + + ++ K+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 851 TAALAAASESKQSLTKRNISRSVVLFTSSTMLK-NNYLKNIPISDTLVEYMGGNNIFLTA 909
TA A+ S +T+ + Y I +D E +
Sbjct: 512 TAWNASGS------------------ILNTLQQLKFYKPYICDNDPKYERL--------V 545
Query: 910 KKLLKLGFLPTTPVIVVENCSLSNQK-ITRLILLDLKKKIFQ 950
+L FLP + EN S + R+ L+ + IF+
Sbjct: 546 NAILD--FLPK----IEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 59.5 bits (143), Expect = 4e-09
Identities = 96/655 (14%), Positives = 192/655 (29%), Gaps = 203/655 (30%)
Query: 9 FYKNNLNNLYLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPF 68
F + L Y +L M + E P S + R ++ + ++ F
Sbjct: 82 FVEEVLRINY-KFL-------MSPIKTEQRQP----SMMTRMYIEQR--DRLYNDNQ-VF 126
Query: 69 PMVHIDTGHNFPEVISFRDNCISKLGETLIVRSVEDSI----MKGTVRLRKPNTDSRNAA 124
++ R KL + L+ ++ + G +
Sbjct: 127 AKYNVS-----------RLQPYLKLRQALLELRPAKNVLIDGVLG-------------SG 162
Query: 125 QSITLLETIKEFKFDACIGGARRDEEKARAKERIFSFRDKFGQWN-PKSQRPELWNLYNT 183
++ L+ +K + +IF N P++ L L
Sbjct: 163 KTWVALDVCLSYKVQCKMDF------------KIFWL--NLKNCNSPETVLEMLQKLL-Y 207
Query: 184 RVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIPFTNLTPAH 243
++ P R SN I I + L K LL+ L
Sbjct: 208 QIDPNWTSRSDHSSN-----IKLRIHSIQAEL-RRLLKSKPY---ENCLLV----LLNVQ 254
Query: 244 PGEIIENLMVRFRTVGDILCTCPILSNATT----VEDIIKEISVTQITERGATRIDDQNS 299
+ F ++ +C IL TT V D + + T I
Sbjct: 255 NAKAWNA----F----NL--SCKIL--LTTRFKQVTDFLSAATTTHI------------- 289
Query: 300 EASMEKRKKTEAPEKKQSVF------KKHSLLRFITAGS---VDDGKSTLIGRLLFDSKN 350
S++ T P++ +S+ + L R + + + ++I + D
Sbjct: 290 --SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-----SIIAESIRDGLA 342
Query: 351 IFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFII-- 408
+ D V+ K + I+ SL + LE + + F + +
Sbjct: 343 TW-DNWKHVNCDKLTTI-----IESSL--NVLEPAEYR--------KMF----DRLSVFP 382
Query: 409 ADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHII 468
++I V+++++ K + + Q K +I + ++ +
Sbjct: 383 PSAHIPTI-LLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 469 IAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYNG 528
N+ L ++ IV Y + D++I + +Y+
Sbjct: 438 KLENEYAL-------HRSIVDHYN--------------IPKTFDSDDLIPPYLDQYFYS- 475
Query: 529 PTLISL-LESLNTNEKIDKKP-----LRFPVQLVARHCG----------HISKDFRGYMG 572
I L+++ E++ RF ++ RH + + + Y
Sbjct: 476 --HIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 573 RIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISR 627
I ND P K +++N LD + LI +Y D+ R
Sbjct: 533 Y-----ICDND-----P-------KYERLVNAILDF-LPKIEENLICSKYTDLLR 569
Score = 38.7 bits (89), Expect = 0.010
Identities = 37/297 (12%), Positives = 74/297 (24%), Gaps = 97/297 (32%)
Query: 3 NFKNDIFYKN------------NLNNLYLDWLESEAIHIMREVSAECN---NPVLLFSGG 47
IF+ N L L I ++ + N L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLY--------QIDPNWTSRSDHSSNIKLRIHSI 230
Query: 48 KDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVI-SFRDNCISKLGETLIV---RSVE 103
+ L RL + + ++ + N + +F +C + L+ + V
Sbjct: 231 QAE--LRRL----LKSKPYENCLLVLLNVQN-AKAWNAFNLSC-----KILLTTRFKQVT 278
Query: 104 DSIMKGTVRLR--KPNTDSRNAAQSITLLETIKEFKFD-----ACIG--------GARRD 148
D + T ++ + + +LL + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 149 EEKARAKERIFSFRDKFGQWNPKS---QRP-ELWNLYNTRVHPGENIRVFP----ISN-- 198
+ A DK S P E ++ + + VFP I
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-------DRLSVFPPSAHIPTIL 391
Query: 199 ----WTELDIWQYIEREKII-------------------LPSLYFAHKRKIIKRKGL 232
W ++ + ++ +PS+Y K K+ L
Sbjct: 392 LSLIWFDVI---KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Score = 34.8 bits (79), Expect = 0.19
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 862 QSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFLPTT 921
Q K N+SR L+ L+ P + L++ + G + K + L +
Sbjct: 124 QVFAKYNVSRLQPY----LKLRQALLELRPAKNVLIDGVLG-----SGKTWVALDVCLSY 174
Query: 922 PVIVVENC-----SLSNQKITRLILLDLKKKIFQFEKP 954
V + +L N +L L+K ++Q +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function,
protein structure INI secsg, conserved hypothetical
protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP:
b.43.3.1
Length = 116
Score = 59.3 bits (144), Expect = 7e-11
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 525 WYNGPTLISLLESLNTNEKIDKKPL-RFPVQLVARHCGHISKDFRGYM-GRIESGIIKKN 582
+ + + E + KKP + V+ V G + + G +ESG+I
Sbjct: 14 FLKRKEVKEEEKI----EILSKKPAGKVVVEEVVNIMG------KDVIIGTVESGMIGVG 63
Query: 583 DCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIK-EYLDISRGNML 631
V+ I I+ + ++ AI G + + I+ + + +G++L
Sbjct: 64 F--KVKGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIGKVKKGDVL 111
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta,
alpha-beta-alpha sandwich, structural genomics, PSI, P
structure initiative; HET: SAH; 2.27A {Archaeoglobus
fulgidus} SCOP: c.90.1.1
Length = 221
Score = 55.5 bits (134), Expect = 1e-08
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 14/121 (11%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVL-YDALITNELLMLCPKAKHIFVGKRFKKHSI 797
++I+G+G T R ++ +A+V+ + EL + ++ +
Sbjct: 24 IWIVGSGTCRGQT-TERAKEIIERAEVIYGSRRAL--ELAGVVDDSRARILRSFKGDE-- 78
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
I RI+ + V + GDPM+ G + +K+ P I++ A
Sbjct: 79 ----IRRIM--EEGREREVAVISTGDPMVAGLGRVLREIAEDVE--IKIEPAISSVQVAL 130
Query: 858 S 858
+
Sbjct: 131 A 131
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 53.5 bits (128), Expect = 3e-07
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 43/163 (26%)
Query: 330 AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQG 389
VD GKSTL L+ + I S + TD + E+E+G
Sbjct: 25 IAHVDHGKSTLTDSLVQRAGII-----------------SAAKAGEARFTDTRKDEQERG 67
Query: 390 ITI--------------DVAYRYFNTPKRKFII--ADTPGHEQYTRNMITGASTADAVII 433
ITI DV T F+I D+PGH ++ + D ++
Sbjct: 68 ITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALV 127
Query: 434 LIDASKIKFNPSVNLLTQTKRHSIIAHLLRIK-HIIIAVNKMD 475
++D + + QT+ ++ L + ++ +NK+D
Sbjct: 128 VVDTIE-------GVCVQTET--VLRQALGERIKPVVVINKVD 161
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 52.1 bits (126), Expect = 4e-07
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 26/123 (21%)
Query: 406 FIIADTPG-HEQYTRN-----MITGASTA----DAVIILIDASKIKFNPSVNLLTQTKRH 455
I DTPG +E + M+ A + D ++ +IDA++ + P
Sbjct: 61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE-GWRPRDEE------- 112
Query: 456 SIIAHLLRIKH--IIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNG 513
I + ++ + +I+ +NK+D I + I +KK E I +PISAL G
Sbjct: 113 -IYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPE---LTEI--VPISALKG 166
Query: 514 DNI 516
N+
Sbjct: 167 ANL 169
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 50.5 bits (121), Expect = 6e-07
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 14/128 (10%)
Query: 398 YFNTPKRKFIIADTPG---HEQYTRNMITGASTA------DAVIILIDASKIKFNPSVNL 448
+F+ K+ I DTPG RN I + ++ +ID S+ + +
Sbjct: 70 HFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISE---QCGLTI 126
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
Q I + K I+I NK+D N + + K D I
Sbjct: 127 KEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDN--KLLIKQILDNVKNPIKFSSF 184
Query: 509 SALNGDNI 516
S L G +
Sbjct: 185 STLTGVGV 192
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 49.6 bits (119), Expect = 6e-07
Identities = 49/190 (25%), Positives = 73/190 (38%), Gaps = 50/190 (26%)
Query: 331 GSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGI 390
G VD GK+TL LDA+ +K V E+ GI
Sbjct: 15 GHVDHGKTTL---------------LDAIRHSK---VTEQ------------EA---GGI 41
Query: 391 TIDV-AYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLL 449
T + AY+ +K DTPGHE +T GA D VI+++ A ++
Sbjct: 42 TQHIGAYQ-VTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD-------GVM 93
Query: 450 TQTK---RHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTI 506
QT H+ A++ II+A+NKMD N + + Y E+ I
Sbjct: 94 PQTVEAINHAKAANV----PIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTI-FC 148
Query: 507 PISALNGDNI 516
+SA + +
Sbjct: 149 KLSAKTKEGL 158
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 50.1 bits (121), Expect = 2e-06
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 26/127 (20%)
Query: 400 NTPKRKFIIADTPG-HEQYT----RNMITGASTA----DAVIILIDASKIKFNPSVNLLT 450
+ I DTPG H + R M AS++ + VI +++ ++
Sbjct: 52 TEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW---------- 101
Query: 451 QTKRHSIIAHLLRIKH-IIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPIS 509
++ L K +I+AVNK+D + + + A ++F +I +PIS
Sbjct: 102 TPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHL----QFLASQMNFLDI--VPIS 155
Query: 510 ALNGDNI 516
A G N+
Sbjct: 156 AETGLNV 162
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 48.5 bits (116), Expect = 5e-06
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPG---------HEQYTRNMITGASTADAVIILIDASK 439
G+T++ +++F++ D PG E RN I AD ++ ++D++
Sbjct: 35 GVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILD-GNADVIVDIVDSTC 93
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ N + L + + +K+II+ +NK DL+ K KK +++
Sbjct: 94 LMRN--LFLTLELF-------EMEVKNIILVLNKFDLLK-----KKGAKIDIKKMRKEL- 138
Query: 500 FQNINTIPISALNGDNI 516
+ IP +A G+ +
Sbjct: 139 --GVPVIPTNAKKGEGV 153
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 49.1 bits (117), Expect = 5e-06
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Query: 391 TIDVAYRYFNTPKRKFIIADTPG---HEQYTRNMITGAS------TADAVIILIDASKIK 441
T + F ++ I DTPG RN I + + +I + D S+
Sbjct: 201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC 260
Query: 442 FNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQ 501
P L Q + + ++ +NK+D+ + I K+ + + +
Sbjct: 261 GFP---LEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENI---------KRLEKFVKEK 308
Query: 502 NINTIPISALNGDNI 516
+N I ISAL G I
Sbjct: 309 GLNPIKISALKGTGI 323
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 48.5 bits (116), Expect = 7e-06
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 31/138 (22%)
Query: 389 GITIDVAYRYFNT-PKRKFIIADTPG-HEQYT--RNMITGASTA----DAVIILIDASKI 440
G T D Y+ P + DTPG + R + A D I++ D++
Sbjct: 67 GTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP- 125
Query: 441 KFNPSVNLLTQTKRHSIIAHLLRIKHI--IIAVNKMDLINYNQIFYKRIVYAYKKFAEDI 498
T + + +L + I ++ VNK+D++ K E
Sbjct: 126 ---------TPYEDD--VVNLFKEMEIPFVVVVNKIDVLGEKAE-------ELKGLYESR 167
Query: 499 HFQNINTIPISALNGDNI 516
+ + + +SAL
Sbjct: 168 YEAKV--LLVSALQKKGF 183
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 47.8 bits (115), Expect = 8e-06
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 29/128 (22%)
Query: 400 NTPKRKFIIADTPG-HEQYT---RNMITGASTA----DAVIILIDASKIKFNPSVNLLTQ 451
+R+ + DTPG H+ M A +AV+ ++D P L+ +
Sbjct: 51 TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH-PPTPEDELVAR 109
Query: 452 TKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKK---FAEDIHFQNINTIPI 508
+ L+ I++ NK+D Y + + AY + AE +
Sbjct: 110 -----ALKPLVGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAE--------PRML 152
Query: 509 SALNGDNI 516
SAL+ +
Sbjct: 153 SALDERQV 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 48.5 bits (116), Expect = 9e-06
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 21/143 (14%)
Query: 334 DDGKSTLIGRLLFDSKNIFIDQLDAV-SRTKYKRVMSGHNIDLSLLTDGLESEREQGITI 392
D GK+TL +LL I + SR + S D +E E+++GI++
Sbjct: 23 DAGKTTLTEKLLLFGGAI--QLAGTIKSRKAARHATS----------DWMELEKQRGISV 70
Query: 393 DVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT 452
+ F + DTPGH +T + + D+ +++IDA+K + +T
Sbjct: 71 TTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK-------GVEPRT 123
Query: 453 KRHSIIAHLLRIKHIIIAVNKMD 475
+ + L I+ +NKMD
Sbjct: 124 IKLMEVCRLRHTP-IMTFINKMD 145
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 47.8 bits (114), Expect = 2e-05
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 334 DDGKSTLIGRLLFDSKNIFIDQLDAV-SRTKYKRVMSGHNIDLSLLTDGLESEREQGITI 392
D GK+T+ ++L + I V R + S D +E E+++GI+I
Sbjct: 23 DAGKTTITEKVLLFGQAI--QTAGTVKGRGSNQHAKS----------DWMEMEKQRGISI 70
Query: 393 DVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQT 452
+ F + DTPGHE ++ + + D +++IDA+K + +T
Sbjct: 71 TTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK-------GVEDRT 123
Query: 453 KRHSIIAHLLRIKHIIIAVNKMD 475
++ + L I+ +NK+D
Sbjct: 124 RKLMEVTRLRDTP-ILTFMNKLD 145
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 45.4 bits (108), Expect = 2e-05
Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 25/146 (17%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPG----------HEQYTRNMITG-----ASTADAVII 433
G+T + K I D PG ++ ++ I A D ++
Sbjct: 33 GVTRKI--IEIEWKNHKII--DMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVL 88
Query: 434 LIDA-SKIKFNPSVNLLTQTKRHSIIAHLLRIKHI--IIAVNKMDLINYNQIFYKRIVYA 490
++D + + + LR I I+AVNK+D I Q +
Sbjct: 89 VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLA-- 146
Query: 491 YKKFAEDIHFQNINTIPISALNGDNI 516
+KF + + IPISA GDNI
Sbjct: 147 -EKFEVPLSEIDKVFIPISAKFGDNI 171
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 43.6 bits (104), Expect = 5e-05
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 30/138 (21%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPG---------HEQYTRNMITGASTADAVIILIDASK 439
G+T++ F KF + D PG E R+ I D V+ ++DA+
Sbjct: 35 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN-EKPDLVVNIVDATA 93
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDI 498
++ N + L Q L+ + ++++A+NKMDL I I K + +
Sbjct: 94 LERN--LYLTLQ---------LMEMGANLLLALNKMDLAKSLGI---EI--DVDKLEKIL 137
Query: 499 HFQNINTIPISALNGDNI 516
+ +P+SA I
Sbjct: 138 ---GVKVVPLSAAKKMGI 152
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 45.1 bits (106), Expect = 6e-05
Identities = 35/236 (14%), Positives = 69/236 (29%), Gaps = 61/236 (25%)
Query: 329 TAGSVDDGKSTLIGRL---LFDSKNIFIDQLD-AVSRTKYKRVMSGHNIDLSLLTDGLES 384
TAGS GK+TL G L D+ + LD V Y+ + + + + +
Sbjct: 22 TAGS---GKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSID--VREFVTVEEIMRE 76
Query: 385 EREQGITIDVAYRYFNT-------------PKRKFIIADTPGH-EQYT----RNMITGAS 426
I +Y + +++ DTPG E + +
Sbjct: 77 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 136
Query: 427 TADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI--------- 477
V+ + D +K P+ + +I L I +NK+DL+
Sbjct: 137 PYPLVVYISDPEILK-KPN-DYCFVRFFALLIDLRLGATTIPA-LNKVDLLSEEEKERHR 193
Query: 478 -----------------NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
+ + ++ + + + +SA +
Sbjct: 194 KYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRV-----LYLSAKTREGF 244
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 44.1 bits (105), Expect = 6e-05
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 30/138 (21%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPG---------HEQYTRNMITGASTADAVIILIDASK 439
G+T++ F KF + D PG E R+ I D V+ ++DA+
Sbjct: 39 GVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN-EKPDLVVNIVDATA 97
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDI 498
++ N + L Q L+ + ++++A+NKMDL I K + +
Sbjct: 98 LERN--LYLTLQ---------LMEMGANLLLALNKMDLAK-----SLGIEIDVDKLEKIL 141
Query: 499 HFQNINTIPISALNGDNI 516
+ +P+SA I
Sbjct: 142 ---GVKVVPLSAAKKMGI 156
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 44.2 bits (105), Expect = 9e-05
Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 30/138 (21%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPG---------HEQYTRNMITGASTADAVIILIDASK 439
G+T++ F + D PG E+ R+ + AD VI++ D+
Sbjct: 37 GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK-GDADLVILVADSVN 95
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDI 498
+ + + LL + +L + K +I+A+ +D + +I + + +
Sbjct: 96 PEQS--LYLLLE---------ILEMEKKVILAMTAIDEAKKTGM---KI--DRYELQKHL 139
Query: 499 HFQNINTIPISALNGDNI 516
I + S++ G+ +
Sbjct: 140 ---GIPVVFTSSVTGEGL 154
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 41.8 bits (99), Expect = 3e-04
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 19/92 (20%)
Query: 425 ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFY 484
AD V+ ++D + + + IA L I + NK D+
Sbjct: 81 IEQADRVLFMVDGTTTDAVDPAEIWPE-----FIARLPAKLPITVVRNKADITG------ 129
Query: 485 KRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
+ I +SA G+ +
Sbjct: 130 --------ETLGMSEVNGHALIRLSARTGEGV 153
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 42.3 bits (100), Expect = 4e-04
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 34/142 (23%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPG-------------HEQYTRNMITGASTADAVIILI 435
G+T++ F+T + + D PG EQ + I AD +I ++
Sbjct: 35 GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS-GDADLLINVV 93
Query: 436 DASKIKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLINYNQIFYKRIVYAYKKF 494
DAS ++ N + L Q LL + I+A+N +D+ + I
Sbjct: 94 DASNLERN--LYLTLQ---------LLELGIPCIVALNMLDIAE-----KQNIRIEIDAL 137
Query: 495 AEDIHFQNINTIPISALNGDNI 516
+ + IP+ + G I
Sbjct: 138 SARL---GCPVIPLVSTRGRGI 156
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 41.5 bits (98), Expect = 0.001
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 22/115 (19%)
Query: 406 FIIADTPGHEQYTRNMIT-GASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI 464
FI DTPGHE +T + G + AD I+++D ++ QT+ ++ ++LR+
Sbjct: 74 FI--DTPGHEAFT-TLRKRGGALADLAILIVDINE-------GFKPQTQE-AL--NILRM 120
Query: 465 KH--IIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNII 517
++A NK+D I + V+ + F E Q+I ++
Sbjct: 121 YRTPFVVAANKIDRI------HGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELV 169
Score = 30.3 bits (69), Expect = 3.2
Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 22/112 (19%)
Query: 573 RIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSLDMAITGQSVTLIIKEYL---DISRGN 629
+ +G+I++ L+ + T++ +Q ++L A GQ V + IK+ + I G+
Sbjct: 485 EVLTGVIRQGYPLMNDDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIHEGD 544
Query: 630 MLVSPFKRPVSLRSINANLCWLSEESLDLRRKYLLKHSTN---QILSRILKI 678
L + E + ++ L T+ ++ +I +I
Sbjct: 545 TLYV----------------DIPENHYHILKEQLSGDLTDEELDLMDKIAEI 580
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 41.4 bits (98), Expect = 0.001
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 16/92 (17%)
Query: 425 ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFY 484
+ AD ++ L+D + + + + + + + NK+D
Sbjct: 310 MAEADLILYLLDLGTERLDDELTEIRE------LKAAHPAAKFLTVANKLDRAANADALI 363
Query: 485 KRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
+ I I ISALNGD I
Sbjct: 364 RAI----------ADGTGTEVIGISALNGDGI 385
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 41.3 bits (98), Expect = 0.001
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 60/195 (30%)
Query: 331 GSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGI 390
G VD GK++L L+ + TK V SG E+ GI
Sbjct: 11 GHVDHGKTSL---------------LEYIRSTK---VASG------------EA---GGI 37
Query: 391 T--IDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
T I AY T DTPGH +T GA D V++++ A + V
Sbjct: 38 TQHIG-AYH-VETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAA-----DDGV-- 88
Query: 449 LTQTKRHSIIAHLLRIKH-------IIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQ 501
+ QT I+H +++AVNK+D + K + Y E+ +
Sbjct: 89 MPQTIE--------AIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGE 140
Query: 502 NINTIPISALNGDNI 516
+ + +SA G I
Sbjct: 141 SQ-FVHVSAKAGTGI 154
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 41.0 bits (97), Expect = 0.002
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 20/92 (21%)
Query: 425 ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFY 484
AD V+ ++DAS + I ++ K ++ +NK+D++
Sbjct: 321 IEKADIVLFVLDASS----------PLDEEDRKILERIKNKRYLVVINKVDVVEKIN--- 367
Query: 485 KRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
++ ++ + + + ISAL G+ +
Sbjct: 368 -------EEEIKNKLGTDRHMVKISALKGEGL 392
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 40.0 bits (93), Expect = 0.003
Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 17/154 (11%)
Query: 405 KFIIADTPGHEQYTRNMITGA-----STADAVIILIDASKIKFNPSVNLLTQTKRHSIIA 459
+ D G + + N T +I + D + + + +
Sbjct: 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIF-----AKALK 107
Query: 460 HLLRIK---HIIIAVNKMDLI--NYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGD 514
L + I + ++KMDL+ + + ++ ++ + + + F N+ P S +
Sbjct: 108 QLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDES 167
Query: 515 NIISASN--NMLWYNGPTLISLLESLNTNEKIDK 546
+ S L N S L+ +
Sbjct: 168 LYKAWSQIVCSLIPNMSNHQSNLKKFKEIMNALE 201
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 39.6 bits (93), Expect = 0.003
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 34/142 (23%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPG-------------HEQYTRNMITGASTADAVIILI 435
G+T++ F + I D PG EQ + D +I +I
Sbjct: 33 GVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID-LEYDCIINVI 91
Query: 436 DASKIKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLINYNQIFYKRIVYAYKKF 494
DA ++ + + L +Q L + K +++A+N MD+ ++ I +K
Sbjct: 92 DACHLERH--LYLTSQ---------LFELGKPVVVALNMMDIAE-----HRGISIDTEKL 135
Query: 495 AEDIHFQNINTIPISALNGDNI 516
+ + IPI A I
Sbjct: 136 ESLL---GCSVIPIQAHKNIGI 154
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 39.4 bits (93), Expect = 0.005
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 425 ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFY 484
A+TAD V++ IDA+ T I ++ + +I+ +NK+DL+
Sbjct: 301 ANTADLVLLTIDAAT----------GWTTGDQEIYEQVKHRPLILVMNKIDLVE------ 344
Query: 485 KRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
+ + + +A I
Sbjct: 345 -----KQLITSLEYPENITQIVHTAAAQKQGI 371
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 38.4 bits (89), Expect = 0.008
Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 415 EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474
+ + R + + V+ ++D + + +++ NK
Sbjct: 57 DDFLRILNGIGKSDALVVKIVDIFDF----------NGSWLPGLHRFVGNNKVLLVGNKA 106
Query: 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
DLI + + ++ + + A+ + + + ISA G I
Sbjct: 107 DLIP-KSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGI 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 38.6 bits (91), Expect = 0.009
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 45/151 (29%)
Query: 389 GIT---IDVAYRYFNTPKRKFIIADTPG----------HEQY----TRNMITGASTADAV 431
G T +D ++ Y ++F+I DT G E+Y I ++ V
Sbjct: 208 GTTRDAVDTSFTYNQ---QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI---DRSEVV 261
Query: 432 IILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLINYNQIFYKRIVYA 490
+++D + ++ Q KR I + K ++I VNK D ++ ++
Sbjct: 262 AVVLDGEE-------GIIEQDKR--IAGYAHEAGKAVVIVVNKWDAVDKDE-------ST 305
Query: 491 YKKFAEDI-----HFQNINTIPISALNGDNI 516
K+F E+I + +SAL I
Sbjct: 306 MKEFEENIRDHFQFLDYAPILFMSALTKKRI 336
Score = 30.9 bits (71), Expect = 2.4
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 31/123 (25%)
Query: 404 RKFIIADT----PGHEQYTRNMITGA----STADAVIILIDASKIKFNPSVNLLTQTKRH 455
F + DT G E + + A AD +I +++ +T
Sbjct: 51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGR--------EGVTAADEE 102
Query: 456 SIIAHLLR--IKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNG 513
+A +L K +++AVNK+D N I Y + + PIS +G
Sbjct: 103 --VAKILYRTKKPVVLAVNKLD----NTEMRANIYDFYSLGFGEPY-------PISGTHG 149
Query: 514 DNI 516
+
Sbjct: 150 LGL 152
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 38.1 bits (89), Expect = 0.009
Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 31/138 (22%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPG---------HEQYTRNMITGASTADAVIILIDASK 439
G+T++ + I D PG + R+ + AD+++ ++DA+
Sbjct: 35 GVTVERKSGLV-KKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QRADSILNVVDATN 92
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDI 498
++ N + L TQ L+ + IA+N +D+++ + K + +
Sbjct: 93 LERN--LYLTTQ---------LIETGIPVTIALNMIDVLD-----GQGKKINVDKLSYHL 136
Query: 499 HFQNINTIPISALNGDNI 516
+ + SAL +
Sbjct: 137 ---GVPVVATSALKQTGV 151
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 37.4 bits (87), Expect = 0.013
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 396 YRYFNTPKRKFIIADTPGHEQYTRNMITGA--STADAVIILIDASKIKFNPSVNLLTQTK 453
Y+ N + D PGHE R + S+A AV+ ++D++ + +
Sbjct: 46 YKVNNNRGNSLTLIDLPGHESL-RFQLLDRFKSSARAVVFVVDSAAFQ-----REVKDVA 99
Query: 454 R--HSIIAHLLRIKH---IIIAVNKMDLIN 478
+ ++ + +K+ ++IA NK D+
Sbjct: 100 EFLYQVLIDSMALKNSPSLLIACNKQDIAM 129
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 37.9 bits (89), Expect = 0.014
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 41/126 (32%)
Query: 406 FIIADTPGHEQYT----RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL 461
F+ DTPGH ++ R G D VI+++ A + V + QT +
Sbjct: 56 FL--DTPGHAAFSAMRAR----GTQVTDIVILVVAA-----DDGV--MKQTVE----S-- 96
Query: 462 LRIKH-------IIIAVNKMDLINYNQIFYKRIVYAYKKFAE----DIHFQNINTIPISA 510
I+H I++A+NK D + K+ + AY E D+ + +SA
Sbjct: 97 --IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQA-----VHVSA 149
Query: 511 LNGDNI 516
L G+N+
Sbjct: 150 LTGENM 155
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 36.5 bits (85), Expect = 0.028
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 30/111 (27%)
Query: 412 PGHEQYTRNMITG-ASTADAVIILIDA-----SKIKFNPSVNLLTQTKRHSIIAHLLRIK 465
PGH R +T D V L+DA S R+ +I +L+ K
Sbjct: 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSS---------------RNPMIEDILKNK 51
Query: 466 HIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
I+ +NK D + ++ ++ Q I ++ I+++NG +
Sbjct: 52 PRIMLLNKADKADAAVT--QQWKEHFEN-------QGIRSLSINSVNGQGL 93
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 37.1 bits (87), Expect = 0.030
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 30/124 (24%)
Query: 404 RKFIIADTPGHEQYTRNMITGA---------STADAVIILIDASKIKFNPSVNLLTQTKR 454
+ F + DT G +++I+ AD V+ ++D +T+
Sbjct: 49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGK--------RGITKEDE 100
Query: 455 HSIIAHLLR--IKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALN 512
+A LR I+ NK + N + + Y + P+SA +
Sbjct: 101 S--LADFLRKSTVDTILVANKAE--NLREFEREVKPELYSLGFGEPI-------PVSAEH 149
Query: 513 GDNI 516
N+
Sbjct: 150 NINL 153
Score = 35.6 bits (83), Expect = 0.077
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 32/145 (22%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPG-----------HEQY----TRNMITGASTADAVII 433
G T D RK++ DT G E+Y + I AD V+I
Sbjct: 213 GTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI---EKADVVVI 269
Query: 434 LIDASKIKFNPSVNLLTQTKRHSIIAHLLRI-KHIIIAVNKMDLINYNQIFYKRIVYAYK 492
++DA++ + Q +R + + R + ++ NK DL+ + + KR K
Sbjct: 270 VLDATQ-------GITRQDQR--MAGLMERRGRASVVVFNKWDLVVHRE---KRYDEFTK 317
Query: 493 KFAEDIHF-QNINTIPISALNGDNI 516
F E ++F I SA G NI
Sbjct: 318 LFREKLYFIDYSPLIFTSADKGWNI 342
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 36.6 bits (85), Expect = 0.043
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 28 HIMREVSAECNNPVLL-FSGGKDSVVLLRLAEKAFRPSRFPFPMVHID 74
I R V++ SGG DS+ LL + + H+D
Sbjct: 8 FIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVD 55
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 36.3 bits (85), Expect = 0.048
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 23/87 (26%)
Query: 333 VDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITI 392
VD GKSTL RL ++ A+S +R L D L+ ERE+GIT+
Sbjct: 15 VDHGKSTLADRL--------LEYTGAIS----EREKREQ------LLDTLDVERERGITV 56
Query: 393 -----DVAYRYFNTPKRKFIIADTPGH 414
+ Y+ + K + DTPGH
Sbjct: 57 KMQAVRMFYKAKDGNTYKLHLIDTPGH 83
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 36.3 bits (85), Expect = 0.048
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 23/87 (26%)
Query: 333 VDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITI 392
+D GKSTL R+ I +S R M + D ++ ERE+GITI
Sbjct: 13 IDHGKSTLSDRI--------IQICGGLS----DREMEAQ------VLDSMDLERERGITI 54
Query: 393 -----DVAYRYFNTPKRKFIIADTPGH 414
+ Y+ + + DTPGH
Sbjct: 55 KAQSVTLDYKASDGETYQLNFIDTPGH 81
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 35.3 bits (82), Expect = 0.084
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 391 TIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITG-----AST------ADAVIILIDASK 439
T+ RK ++ DT G + R + T +DA+I++ID++
Sbjct: 213 TMSPKRYAIPINNRKIMLVDTVG---FIRGIPPQIVDAFFVTLSEAKYSDALILVIDST- 268
Query: 440 IKFNPSVNLLTQTKR-HSIIAHL-LRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAED 497
L+ + I+ + + K I++ +NK+D IN + +V +K +++
Sbjct: 269 ---FSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLV---EKLSKE 322
Query: 498 IHFQNINTIPISALNGDNI 516
++ + IPISAL N+
Sbjct: 323 LYSPIFDVIPISALKRTNL 341
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 33.9 bits (78), Expect = 0.13
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 15/86 (17%)
Query: 403 KRKFIIADTPGHEQY----TRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKR--HS 456
+ D PGH + + + T A +I ++D++ LT T
Sbjct: 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK-----LTTTAEFLVD 144
Query: 457 IIAHLLRIKH----IIIAVNKMDLIN 478
I++ I+IA NK +L
Sbjct: 145 ILSITESSCENGIDILIACNKSELFT 170
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 34.4 bits (80), Expect = 0.16
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 49/135 (36%)
Query: 404 RKFIIADTPGHEQYTRNMITGAS---------------TADAVII-LIDASKIKFNPSVN 447
+F +AD PG +I GAS T V++ ++DA+ P
Sbjct: 205 ERFTLADIPG-------IIEGASEGKGLGLEFLRHIARTR--VLLYVLDAAD---EPLKT 252
Query: 448 LLTQTKRHSIIAHL------LRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQ 501
L T + + L + ++A+NK+DL+ + K A+ + +
Sbjct: 253 LET------LRKEVGAYDPALLRRPSLVALNKVDLLEEEAV---------KALADALARE 297
Query: 502 NINTIPISALNGDNI 516
+ +P+SAL G +
Sbjct: 298 GLAVLPVSALTGAGL 312
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 34.0 bits (78), Expect = 0.16
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 400 NTPKRKFIIADTPGHEQYTRNM-----ITGASTADAVIILIDASKIKFNPSVNLLTQTKR 454
+ + D PGH + R T A +I ++D++ LT T
Sbjct: 51 DYDGSGVTLVDFPGHVKL-RYKLSDYLKTRAKFVKGLIFMVDSTVDPKK-----LTTTAE 104
Query: 455 --HSIIAHLLRIKH----IIIAVNKMDLIN 478
I++ I+IA NK +L
Sbjct: 105 FLVDILSITESSCENGIDILIACNKSELFT 134
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 34.6 bits (78), Expect = 0.17
Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 43/181 (23%)
Query: 330 AGSVDDGKSTLIGRLLFD-----------------------SKNIFIDQLDAVSRTKYKR 366
G + GKST + L+ + I + + + ++
Sbjct: 75 LGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQN 134
Query: 367 VMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTP--KRKFIIADTPG------HEQYT 418
+ ID + + +++ +D A + ++ I D+PG + +
Sbjct: 135 FKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELS 194
Query: 419 RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL-LRIKHIIIAVNKMDLI 477
+ + A++ ++ AS T +R + ++ R + VN D +
Sbjct: 195 LGYV---NNCHAILFVMRAS--------QPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243
Query: 478 N 478
Sbjct: 244 R 244
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 34.8 bits (81), Expect = 0.17
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 379 TDGLESEREQGITIDVA-------YRYFNTPKRKFIIADTPGH 414
D +E E+E+GITI A + I DTPGH
Sbjct: 50 MDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGH 92
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 34.2 bits (78), Expect = 0.21
Identities = 35/213 (16%), Positives = 63/213 (29%), Gaps = 44/213 (20%)
Query: 307 KKTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKR 366
+ E K ++ G GK++L+ +L+ ++ + Q
Sbjct: 24 QSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQ----------- 72
Query: 367 VMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQY---TRNMIT 423
T GL +Q I + F D G E + +T
Sbjct: 73 ------------THGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMT 120
Query: 424 GASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIF 483
+S ++L+D+ I + + I++ NK+D I
Sbjct: 121 RSS---VYMLLLDSRTDSN-------KHYWLRHIEKYGGKSPVIVVM-NKIDENPSYNIE 169
Query: 484 YKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
K+I + I IS NGD +
Sbjct: 170 QKKI----NERFPAIE---NRFHRISCKNGDGV 195
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 33.2 bits (76), Expect = 0.25
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 405 KFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRI 464
+F + PG Y + D ++ + D++ + + + + R ++ + L +
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM-RNMRENLAEYGLTL 133
Query: 465 KHI--IIAVNKMDL 476
+ +I VNK DL
Sbjct: 134 DDVPIVIQVNKRDL 147
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 34.0 bits (79), Expect = 0.30
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 333 VDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITI 392
GK+TL LL+ + + RV G + TD + T+
Sbjct: 18 AGSGKTTLTEALLYKTGAK----------ERRGRVEEG-----TTTTDYTPEAKLHRTTV 62
Query: 393 DVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDA 437
+ + D PG+ + + ADA ++ + A
Sbjct: 63 RTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSA 107
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 32.8 bits (75), Expect = 0.33
Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 18/147 (12%)
Query: 24 SEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVI 83
S A+ +M +LFSGGKDS + + +K + ++ I+ G P
Sbjct: 1 SNAMKLMDVH--------VLFSGGKDSSLSAVILKKLG----YNPHLITINFGV-IPSYK 47
Query: 84 SFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSI--TLLETIKEFKFDAC 141
+ LG V +++ I++ + + A Q + T+LE + + ++
Sbjct: 48 LAEETA-KILGFKHKVITLDRKIVEKAADMIIEHKYPGPAIQYVHKTVLEILAD-EYSIL 105
Query: 142 IGGARRDEEKAR-AKERIFSFRDKFGQ 167
G RRD+ + + I S +
Sbjct: 106 ADGTRRDDRVPKLSYSEIQSLEMRKNI 132
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 33.5 bits (77), Expect = 0.33
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 38 NNPVLL-FSGGKDSVVLLR-LAEKAFRPSRFPFPMVHIDTGHNF 79
+ +L+ FSGG DS VLL L + +H+ H
Sbjct: 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVH--HGL 54
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 32.5 bits (75), Expect = 0.34
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 34/139 (24%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGA---------STADAVIILIDASK 439
G+T D+ T + +F++ DT G + + A+ V+ +D
Sbjct: 34 GVTRDLKEGVVETDRGRFLLVDTGGLW--SGDKWEKKIQEKVDRALEDAEVVLFAVDGR- 90
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLR--IKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAED 497
LTQ +A LR K +I+ K+D + + Y D
Sbjct: 91 -------AELTQADYE--VAEYLRRKGKPVILVATKVD----DPKHELYLGPLYGLGFGD 137
Query: 498 IHFQNINTIPISALNGDNI 516
P S+ + +
Sbjct: 138 PI-------PTSSEHARGL 149
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 33.1 bits (75), Expect = 0.45
Identities = 29/172 (16%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGA---STADAVIILIDASKIKFNPS 445
T + + +F+T + + PG Y + A++ +ID+ N
Sbjct: 32 ESTSNPSLEHFSTLID-LAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAI 90
Query: 446 VNLLTQTKRHSIIAHLLRIK---HIIIAVNKMDLINYN-QIFYKRIVYAYKKFAEDIHFQ 501
NL II + ++ +I + ++K+D ++ + ++ +R + ++ E++
Sbjct: 91 TNL------AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDI--MQRTGEELLEL 142
Query: 502 NINTIPISA----LNGDNIISASN---NMLWYNGPTLISLLESLNTNEKIDK 546
++ + +S + +I A + L L ++L++L + KI+K
Sbjct: 143 GLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKIEK 194
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A
{Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Length = 286
Score = 32.6 bits (74), Expect = 0.50
Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 826 LFGRTDEEL-NALKKYNIKVKVIPG--ITAALAAASESKQSLTKRNISRSVVLFTSSTML 882
L+G+ L NAL + +V + ++++ + + + F ++ +
Sbjct: 163 LYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVD--ALAFVAAIQV 220
Query: 883 KNNYLKNIPISDTLVEYMGGNNIF-----LTAKKLLKLGFLPTTPVIV 925
+ + L E + +TA L + G P V
Sbjct: 221 E-FLFEGAKDPKALREALNTRVKALAVGRVTADALREWGV---KPFYV 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 32.6 bits (75), Expect = 0.57
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 425 ASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI-F 483
A+ D ++I+ S I S+N++ R+ + L+++ +I +NK+DL++ + F
Sbjct: 128 AANIDQIVIV---SAILPELSLNIID---RYLVGCETLQVE-PLIVLNKIDLLDDEGMDF 180
Query: 484 YKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
+ Y +I ++ + +S+ D +
Sbjct: 181 VNEQMDIY----RNIGYR---VLMVSSHTQDGL 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.58
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 833 ELNALKKYNIKVKVI-PGITAALA--AASE 859
E ALKK +K+ ALA A E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 32.5 bits (75), Expect = 0.65
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 429 DAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIV 488
D +++ A + F+ LL R ++ I+ II + KMDLI + +
Sbjct: 88 DQAVLVFSAVQPSFST--ALLD---RFLVLVEANDIQ-PIICITKMDLIEDQD--TEDTI 139
Query: 489 YAYKKFAEDIHFQNINTIPISALNGDNI 516
AY + +I + S+ + D++
Sbjct: 140 QAYAEDYRNIGYD---VYLTSSKDQDSL 164
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 32.5 bits (74), Expect = 0.85
Identities = 2/20 (10%), Positives = 6/20 (30%)
Query: 719 IRSTGSFILIDEITFQTVAA 738
+ GS +++
Sbjct: 1 MEIPGSLCKKVKLSNNAQNW 20
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} PDB: 1wd7_A 1wcx_A
Length = 261
Score = 31.7 bits (72), Expect = 0.89
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 826 LFGRTDEEL-NALKKYNIKVKVIPG--ITAALAAASESKQSLTKRNISRSVVLFTSSTML 882
L+G+ L NAL + +V + +++L + + + F ++ +
Sbjct: 138 LYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVD--ALAFVAAIQV 195
Query: 883 KNNYLKNIPISDTLVEYMGGNNIF-----LTAKKLLKLGFLPTTPVIV 925
+ + L E + +TA L + G P V
Sbjct: 196 E-FLFEGAKDPKALREALNTRVKALAVGRVTADALREWGV---KPFYV 239
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 32.1 bits (74), Expect = 1.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 16/44 (36%)
Query: 379 TDGLESEREQGITIDVA--------YRYFNTPKRKFIIADTPGH 414
D +E E+++GITI A +R N II DTPGH
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHR-VN------II-DTPGH 85
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 32.1 bits (74), Expect = 1.0
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 16/44 (36%)
Query: 379 TDGLESEREQGITIDVA--------YRYFNTPKRKFIIADTPGH 414
D +E ERE+GITI A +R N II DTPGH
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHR-IN------II-DTPGH 87
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 31.4 bits (72), Expect = 1.2
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 443 NPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI-FYKRIVYAYKKFAEDIHFQ 501
+ LL ++ +++ +I NK+DL+N + +R + Y+
Sbjct: 93 EFNNYLLD---NMLVVYEYFKVE-PVIVFNKIDLLNEEEKKELERWISIYRDA------- 141
Query: 502 NINTIPISALNGDNI 516
+ + +SA G+ I
Sbjct: 142 GYDVLKVSAKTGEGI 156
>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily,
isomerase; 2.00A {Propionibacterium freudenreichiisubsp}
SCOP: d.32.1.4 PDB: 1jc5_A
Length = 148
Score = 30.8 bits (69), Expect = 1.2
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 14/116 (12%)
Query: 461 LLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520
+ I H+ A D +Y+ ++ E+ Q + I ++
Sbjct: 7 FICIDHVAYACPDADE---ASKYYQETFGWHELHREENPEQGVVEIMMAP---------- 53
Query: 521 NNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIES 576
T + ++ LN + K + + H D +
Sbjct: 54 -AAKLTEHMTQVQVMAPLNDESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRE 108
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus}
PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Length = 237
Score = 31.2 bits (70), Expect = 1.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 41 VLLFSGGKDSVVLLRLAEK 59
+L+SGGKDS L A K
Sbjct: 8 AVLYSGGKDSNYALYWAIK 26
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 31.3 bits (72), Expect = 1.3
Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 429 DAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI-FYKRI 487
D VI+++ + + ++ + ++A ++ ++ +NKMDL + + + + +
Sbjct: 86 DQVILVVTVKMPETST--YIID---KFLVLAEKNELE-TVMVINKMDLYDEDDLRKVREL 139
Query: 488 VYAYKKFAEDIHFQNINTIPISALNGDNI 516
Y + SA G I
Sbjct: 140 EEIYSGL--------YPIVKTSAKTGMGI 160
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 31.1 bits (71), Expect = 1.6
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 32/112 (28%)
Query: 412 PGH-EQYTRNMITGASTADAVIILIDA-----SKIKFNPSVNLLTQTKRHSIIAHLLRIK 465
PGH E+ R + + V+ + DA + V+ K
Sbjct: 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATS---AYGVDF--------------SRK 47
Query: 466 HIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNII 517
II +NK+D+ + K+ V +KK Q I ++
Sbjct: 48 ETIILLNKVDIADEKTT--KKWVEFFKK-------QGKRVITTHKGEPRKVL 90
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 31.1 bits (70), Expect = 1.7
Identities = 13/102 (12%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 415 EQYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKM 474
+ + + + V+ ++D + I++ NK
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDI----------FDFNGSFIPGLPRFAADNPILLVGNKA 108
Query: 475 DLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
DL+ + Y +++ ++ AE++ ++ +SA G +
Sbjct: 109 DLLP-RSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGM 149
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 31.3 bits (70), Expect = 1.8
Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 37/172 (21%)
Query: 336 GKSTLIGRLLFDSK-----------NIFIDQLDAVSRTKYKRVMSGH--NIDLSLLTDGL 382
GK++ I LL + F+ AV + + + G+ +D L
Sbjct: 77 GKTSFIQYLLEQEVPGSRVGPEPTTDCFV----AVMHGETEGTVPGNALVVDPEKPFRKL 132
Query: 383 ESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITG-----------ASTADAV 431
+ + + N I DTPG + ++ A D +
Sbjct: 133 NPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLI 192
Query: 432 IILIDASKIKFNPSV-NLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQI 482
I+L DA K++ + + + H I + +NK D++ Q+
Sbjct: 193 ILLFDAHKLEISDEFSEAIGALRGHE--------DKIRVVLNKADMVETQQL 236
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 30.3 bits (68), Expect = 2.0
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 405 KFIIADTPGHEQYTRNMITGA---STADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHL 461
F I D PG + A+I +IDA + T+ H ++
Sbjct: 70 NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQ------DDYMEALTRLHITVSKA 123
Query: 462 LRIK---HIIIAVNKMDLIN 478
++ + + ++K+D ++
Sbjct: 124 YKVNPDMNFEVFIHKVDGLS 143
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA
modification, tRNA, hydrolase; 2.95A {Bacillus
subtilis}
Length = 219
Score = 30.7 bits (70), Expect = 2.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 41 VLLFSGGKDSVVLLRLAEKAF 61
+++FSGG+DS L A K F
Sbjct: 7 IVVFSGGQDSTTCLLWALKEF 27
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 30.7 bits (69), Expect = 2.2
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 748 AADLITVRGARLL----------RKADVVLYDALITNELLMLCPKAKHIFVG 789
+LIT AR L A++++ A + L ++ G
Sbjct: 353 GLNLITHHSARTLNLQDYGIAAGNSANLIILPAENGFDALRRQVPVRYSVRG 404
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical
protein, structural genomics, JOIN for structural
genomics; 2.40A {Pectobacterium atrosepticum SCRI1043}
SCOP: c.26.2.1
Length = 232
Score = 30.3 bits (69), Expect = 2.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 41 VLLFSGGKDSVVLLRLAEKAF 61
V++FSGG+DS L A + +
Sbjct: 6 VVVFSGGQDSTTCLIQALQDY 26
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 30.5 bits (68), Expect = 2.6
Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 9/140 (6%)
Query: 122 NAAQSITLLETIKE--FKFDACIGGARRDEEKARAKERI----FSFRDKFGQWNPKSQRP 175
+ ++T E I A + E RI + ++ +P
Sbjct: 103 SLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP 162
Query: 176 ELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKIILPSLYFAHKRKIIKRKGLLIP 235
++ L ++ V + + + + ++ + A KR ++KR L
Sbjct: 163 DIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKKRVVVKRPRLGEH 222
Query: 236 FTNLTPAHPGEIIENLMVRF 255
PA+ RF
Sbjct: 223 LAGQAPAY---QYTGKSTRF 239
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 30.6 bits (70), Expect = 2.6
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 47/136 (34%)
Query: 404 RKFIIADTPGHEQYTRNMITGAS---------------TADAVII-LIDASKIK-FNPSV 446
R F++AD PG +I GA T VI+ +ID S ++ +P
Sbjct: 206 RSFVMADLPG-------LIEGAHQGVGLGHQFLRHIERTR--VIVHVIDMSGLEGRDPYD 256
Query: 447 NLLTQTKRHSIIAHL------LRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF 500
+ LT I L L + II NKMD+ + + +K +D
Sbjct: 257 DYLT------INQELSEYNLRLTERPQIIVANKMDMPEAAEN-LEAFK---EKLTDDYPV 306
Query: 501 QNINTIPISALNGDNI 516
PISA+ + +
Sbjct: 307 -----FPISAVTREGL 317
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 30.5 bits (69), Expect = 2.6
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 17 LYLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLL---RLAEKAFRPSRFPFPMVHI 73
L +L + EVSA+ PV L G D+VV + ++ ++ S H+
Sbjct: 186 LGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTL-----HL 240
Query: 74 --DTGHNF 79
H F
Sbjct: 241 IEGADHCF 248
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 30.4 bits (68), Expect = 2.6
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 303 MEKRKKTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRT 362
M++ + + + S LR I G GKS +L K F +L + + T
Sbjct: 1 MDQNEHSHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSIL--RKQAFESKLGSQTLT 58
Query: 363 KYKRVMSG 370
K G
Sbjct: 59 KTCSKSQG 66
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.9
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 15/56 (26%)
Query: 131 ETIKEFK--FDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTR 184
E+I++++ + D ++ R+K + +L +
Sbjct: 85 ESIRKWREEQRKRL--QELDAASKVMEQEW---REK--------AKKDLEEWNQRQ 127
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A
{Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB:
2e21_A* 2e89_A*
Length = 317
Score = 30.3 bits (69), Expect = 3.0
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 38 NNPVLL-FSGGKDSVVLLR-LAEKAFRPSRFPFPMVHID 74
VL+ FSGG DSVVL L + S + H +
Sbjct: 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFN 62
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 29.9 bits (68), Expect = 3.3
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 351 IFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
++ID++DAV + + + N +E EQ
Sbjct: 102 VYIDEIDAVGKKRSTTMSGFSN-----------TEEEQ 128
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein,
metal binding protein; NMR {Sulfolobus solfataricus}
Length = 99
Score = 28.5 bits (63), Expect = 3.4
Identities = 14/74 (18%), Positives = 36/74 (48%)
Query: 438 SKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAED 497
K+ FN + +L + + + ++ I + + +D I N+ FY I +++ +
Sbjct: 17 GKVNFNLVMQILDEIELDLRGSDNIKTSIIYVYSSHLDEIRKNKEFYDMIAEILQRYYKK 76
Query: 498 IHFQNINTIPISAL 511
I +N+N + ++ +
Sbjct: 77 IGIENVNQLILTTI 90
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 29.6 bits (67), Expect = 4.0
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 405 KFIIADTPGHEQY---TRNMITGASTADAVIILIDASKIK-FNPSVNLLTQTKRHSIIAH 460
+ DT G E++ ++ A D V++L D + K F + + +
Sbjct: 78 VLQLWDTAGQERFRSIAKSYFRKA---DGVLLLYDVTCEKSFLNIREWVDMIEDAAH--- 131
Query: 461 LLRIKHIIIAV--NKMDLINYNQIFYKRIVYAY--KKFAEDIHFQNINTIPISALNGDNI 516
+ + I + NK D+ + ++ V + +K A T SA +G NI
Sbjct: 132 ----ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCET---SAKDGSNI 184
Query: 517 ISA 519
+ A
Sbjct: 185 VEA 187
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
isopropylaminohydrolase ATZC, structural genomics,
NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
Length = 403
Score = 29.9 bits (67), Expect = 4.3
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 748 AADLITVRGARLLR-----------KADVVLYDALITNELLMLCPKAKHIFVG 789
+IT GAR+L KAD+V+ ++L ++ K +
Sbjct: 339 IWKMITSEGARVLGIEKNYGIEVGKKADLVVLNSLSPQWAIIDQAKRLCVIKN 391
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET:
AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB:
1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 29.7 bits (67), Expect = 4.5
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 20 DWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDT 75
D+L+S + + VL SGG+DS + +L + A R +
Sbjct: 28 DFLKSYL-----QTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQF 78
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 29.5 bits (67), Expect = 5.2
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 17/52 (32%)
Query: 343 RLLFDS--KN----IFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
R LF++ K IFID++DA+ +++ + N EREQ
Sbjct: 93 RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGN-----------DEREQ 133
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 28.9 bits (65), Expect = 5.5
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 462 LRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKF-AEDIHFQNI 503
L I H++ A ++ FY+ + Y A+D F ++
Sbjct: 70 LGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNPFFDL 112
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 29.4 bits (66), Expect = 5.6
Identities = 14/108 (12%), Positives = 25/108 (23%), Gaps = 19/108 (17%)
Query: 383 ESEREQGITIDVAYRYFNTPKRKFIIADTPG-------HEQYTRNM--ITGASTADAVII 433
Q + I DTPG + Q + T D ++
Sbjct: 63 RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLY 122
Query: 434 LIDASKIKFN----PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI 477
+ + V +TQT I ++ +
Sbjct: 123 VDRLDVYAVDELDKQVVIAITQTFGKEIW------CKTLLVLTHAQFS 164
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 29.5 bits (66), Expect = 5.8
Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 14/179 (7%)
Query: 684 INTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVA------ 737
+ P LL +N V I + S + + + + V
Sbjct: 89 LTKSFTDPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFATVAQIHGVLLEVFGV 148
Query: 738 AVYIIG-AGPG----AADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRF 792
V + G +G G A DLI + + D + + N L + F+ R
Sbjct: 149 GVLLTGRSGIGKSECALDLIN-KNHLFV--GDDAIEIYRLGNRLFGRAQEVAKKFMEIRG 205
Query: 793 KKHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGIT 851
+ I K + L+V L + + LKK + +
Sbjct: 206 LGIINVERFYGLQITKQRTEIQLMVNLLSLEKQTTVTFERLGTELKKQRLLGVDLSFYE 264
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 29.3 bits (65), Expect = 5.8
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 7/90 (7%)
Query: 10 YKNNLNNLYLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFP 69
Y N +E + + + PV + G D V + A K
Sbjct: 178 YSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPADDV 237
Query: 70 MVHIDTG--HNFPEVISFRDNCISKLGETL 97
++ + H R I ++ +
Sbjct: 238 VLTLVRDGDHRL-----SRPQDIDRMRNAI 262
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 29.2 bits (66), Expect = 5.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 18/52 (34%)
Query: 343 RLLFDS--KN----IFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
R +F+ K IFID++DAV R + + GH+ EREQ
Sbjct: 94 RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD------------EREQ 133
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 29.3 bits (65), Expect = 5.9
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 310 EAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMS 369
+ ++ F+ S R I G GKS +L + F +L A S T+ S
Sbjct: 7 HSSGRENLYFQGESTRRLILVGRTGAGKSATGNSIL--GQRRFFSRLGATSVTRACTTGS 64
Query: 370 G 370
Sbjct: 65 R 65
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.2 bits (65), Expect = 6.1
Identities = 24/195 (12%), Positives = 58/195 (29%), Gaps = 52/195 (26%)
Query: 301 ASMEKRKKTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVS 360
+S + + +Q ++S LR + G GKS +L + +F A S
Sbjct: 8 SSGRENLYFQGGPGRQE--PRNSQLRIVLVGKTGAGKSATGNSIL--GRKVFHSGTAAKS 63
Query: 361 RTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPG------- 413
TK S + + + ++ DTPG
Sbjct: 64 ITKKCEKRSS-----------------------------SWKETELVVVDTPGIFDTEVP 94
Query: 414 HEQYTRNMITGASTA----DAVIILIDASKIKFN--PSVNLLTQTKRHSIIAHLLRIKHI 467
+ + ++ +I A+++++ + + + + +
Sbjct: 95 NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA------RSFM 148
Query: 468 IIAVNKMDLINYNQI 482
I+ + D + +
Sbjct: 149 ILIFTRKDDLGDTNL 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 28.8 bits (65), Expect = 7.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 18/52 (34%)
Query: 343 RLLFDS--KN----IFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
R LF++ ++ +FID++DAV R + V G++ EREQ
Sbjct: 98 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND------------EREQ 137
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 28.9 bits (65), Expect = 8.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 18/52 (34%)
Query: 343 RLLFDS--KN----IFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
R LF++ ++ +FID++DAV R + V G++ EREQ
Sbjct: 122 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGND------------EREQ 161
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 28.8 bits (64), Expect = 9.4
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 806 IVKCAFKYNLVVRLKGG----DPMLFGRTDEELNALKKYNIKVKVIP-----GITAALAA 856
I++ + + V + G P R + ++ LK N + + G AA A
Sbjct: 385 ILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGSGKGAAAIA 444
Query: 857 ASESKQS 863
AS ++Q+
Sbjct: 445 ASCTRQN 451
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 28.7 bits (65), Expect = 9.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 18/52 (34%)
Query: 343 RLLFDS--KN----IFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQ 388
R LF + +FID++DAV R + + GH+ EREQ
Sbjct: 98 RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD------------EREQ 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,704,243
Number of extensions: 934661
Number of successful extensions: 2618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2409
Number of HSP's successfully gapped: 169
Length of query: 967
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 864
Effective length of database: 3,825,930
Effective search space: 3305603520
Effective search space used: 3305603520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.8 bits)