RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3751
(967 letters)
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 213 bits (543), Expect = 8e-64
Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 18/233 (7%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
K H + + G VD GKST G L++ I ++ + + + + + +
Sbjct: 4 KSH--INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAE--LGKGSFKYAWVL 59
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D L++ERE+GITID+A F TPK + + D PGH + +NMITG S AD I++I
Sbjct: 60 DKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 119
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+F ++ QT+ H+++A L ++ +I+AVNKMD + +++ ++ IV F + +
Sbjct: 120 GEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG 179
Query: 500 F--QNINTIPISALNGDNIISASNNMLWY------------NGPTLISLLESL 538
+ + + +PIS NGDN+I A+ N WY G TL+ ++++
Sbjct: 180 YNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAI 232
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 183 bits (465), Expect = 2e-53
Identities = 105/204 (51%), Positives = 142/204 (69%)
Query: 18 YLDWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGH 77
+L LE+E+IHI+REV+AE +NPV+L+S GKDS V+L LA KAF P + PFP++H+DT
Sbjct: 7 HLKQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 66
Query: 78 NFPEVISFRDNCISKLGETLIVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFK 137
F E+ FRD + ++G LI D + +G + + ++ L + + +
Sbjct: 67 KFQEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHG 126
Query: 138 FDACIGGARRDEEKARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPIS 197
FDA GGARRDEEK+RAKER++SFRD +W+PK+QRPELWN+YN V+ GE+IRVFP+S
Sbjct: 127 FDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLS 186
Query: 198 NWTELDIWQYIEREKIILPSLYFA 221
NWTELDIWQYI E I + LYFA
Sbjct: 187 NWTELDIWQYIYLEGIPIVPLYFA 210
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 182 bits (462), Expect = 6e-53
Identities = 90/228 (39%), Positives = 124/228 (54%), Gaps = 8/228 (3%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
K H L I G VD GKSTL+GRLL D I + K + + + L
Sbjct: 1 KPH--LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKK--LGKESEKFAFLL 56
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D L+ ERE+G+TI++ + F T K F I D PGH + +NMITGAS ADA I+++ A K
Sbjct: 57 DRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK 116
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLI--NYNQIFYKRIVYAYKKFAED 497
++ +++ QT+ H I+A + + +I+AVNKMDL Y++ YK IV KF
Sbjct: 117 GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRS 176
Query: 498 IHF--QNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEK 543
F + +P+ A +GDNI S NM WYNGPTL L+ L K
Sbjct: 177 YGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPK 224
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 177 bits (450), Expect = 3e-51
Identities = 123/220 (55%), Positives = 161/220 (73%), Gaps = 9/220 (4%)
Query: 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTD 380
+ +LRF+T G+VDDGKSTLIGRLL DSK I+ D L+A++R K +G ++DL+LL D
Sbjct: 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVD 65
Query: 381 GLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKI 440
GL++EREQGITIDVAYRYF+T KRKFIIADTPGHEQYTRNM TGAST D IIL+DA
Sbjct: 66 GLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY- 124
Query: 441 KFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHF 500
+ TQT+RHS IA LL IKHI++A+NKMDL +++ ++ I Y KFAE I F
Sbjct: 125 ------GVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAF 178
Query: 501 Q--NINTIPISALNGDNIISASNNMLWYNGPTLISLLESL 538
+ + +P+SAL GDN+++ S WY G +L+ +LE++
Sbjct: 179 KPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETV 218
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 160 bits (405), Expect = 6e-45
Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 12/248 (4%)
Query: 299 SEASMEKRKKTEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDA 358
+E + + + + + K K+H + + G VD GKSTL G +LF + + ++
Sbjct: 1 TEDATDLQNEVDQELLKDMYGKEH--VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEK 58
Query: 359 VSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYT 418
+ R + + LS D ERE+G T++V YF T R+F + D PGH+ Y
Sbjct: 59 IEREA--KEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYV 116
Query: 419 RNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDL-- 476
NMI GAS AD +++I A + +F QT+ H+++A I H+++ +NKMD
Sbjct: 117 TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPS 176
Query: 477 INYNQIFYKRIVYAYKKFAEDIH----FQNINTIPISALNGDNII--SASNNMLWYNGPT 530
+ +++ YK V F + ++ +P+SA G N+ S+ WY GP+
Sbjct: 177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPS 236
Query: 531 LISLLESL 538
L+ L+S+
Sbjct: 237 LLEYLDSM 244
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 149 bits (377), Expect = 1e-41
Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 31/229 (13%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
K H + T G VD GK+TL L + + + K
Sbjct: 1 KPH--VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDK-------------- 44
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
ER +GITI+ A+ + T KR + D PGH Y +NMITGA+ D I+++ A+
Sbjct: 45 --APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD 102
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++A + + +I++ +NK+D+++ ++ + +
Sbjct: 103 -------GPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELL-DLVEMEVRDLLNQYE 154
Query: 500 F--QNINTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDK 546
F + I SAL + + + + E L + ID+
Sbjct: 155 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELL---DAIDE 200
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 251
Score = 141 bits (356), Expect = 3e-38
Identities = 41/229 (17%), Positives = 79/229 (34%), Gaps = 6/229 (2%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIA 798
+ +G G I+V+G +R+AD V + L+ + F GKR + +
Sbjct: 3 LTFVGLGLWDVKDISVKGLEAVREADEVYVEYYT--SKLLSSIEEMEEFFGKRVVELERS 60
Query: 799 QYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAAS 858
N + K VV L GDPM+ ++ +K ++I G + + A
Sbjct: 61 DLEENSFRLIERAKSKSVVLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCG 120
Query: 859 ESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNNIF----LTAKKLLK 914
+ + S +V S T + + TL+ + +
Sbjct: 121 LTGLHNYRFGKSATVSWHRSQTPVNVIKANRSIDAHTLLFLDLHPEPMTIGHAVENLIAE 180
Query: 915 LGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSL 963
+ + + + + L +LKK F V+ ++ K+L
Sbjct: 181 DAQMKDLYAVGIARAGSGEEVVKCDRLENLKKIDFGKPLHVMVVLAKTL 229
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT,
UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]}
Length = 265
Score = 135 bits (341), Expect = 4e-36
Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 8/236 (3%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLC-PKAKHIFVGKRFKKHSI 797
V+++GAGPG L+T+ A LR+ADV+++DAL+ + L L P A F GKR K S
Sbjct: 12 VWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGKPSP 71
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
Q I+ +V+ A N V+RLKGGDP +FGR EE L ++ + +++PGITA +
Sbjct: 72 KQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGL 131
Query: 858 SESKQSLTKRNISRSVVLFTSST-----MLKNNYLKNIPISDTLVEYMGGNNIFLTAKKL 912
+ + +T R ++ +V T + N+ S +V YM +I L
Sbjct: 132 AYAGIPVTHREVNHAVTFLTGHDSSGLVPDRINWQGIASGSPVIVMYMAMKHIGAITANL 191
Query: 913 LKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSLKSH 966
+ G P PV V N + Q + L + + E P + ++G+ ++
Sbjct: 192 IAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRLR 247
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 265
Score = 134 bits (337), Expect = 1e-35
Identities = 42/241 (17%), Positives = 76/241 (31%), Gaps = 20/241 (8%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGK-RFKKHSI 797
+Y IG G ITV+G + +K D V + + + + + + R
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSRED 62
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
+ I++ A K N V L GDP++ E K+ ++ VI + +A
Sbjct: 63 VELNFENIVLPLA-KENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIY-SAV 120
Query: 858 SESKQSLTKRNISRSVVLFTSSTMLKNNYLK-----------------NIPISDTLVEYM 900
+ + K S +V + + Y +
Sbjct: 121 GITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANE 180
Query: 901 GGNNIFLTAKKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIG 960
+ F T V+V+ N I + DL ++ F +L + G
Sbjct: 181 AMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPG 240
Query: 961 K 961
K
Sbjct: 241 K 241
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 129 bits (326), Expect = 7e-35
Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
K H + T G VD GK+TL + K G
Sbjct: 1 KPH--VNVGTIGHVDHGKTTLTAAIT-----------------KILAEGGGAKFKKYEEI 41
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
D ER +GITI+ A+ ++T R + D PGH Y +NMITG + D I+++ A+
Sbjct: 42 DNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND 101
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
+ QT+ H ++A + ++H+++ VNK D + +++ + + ++ +
Sbjct: 102 -------GPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMV-ELVELEIRELLTEFG 153
Query: 500 F--QNINTIPISALNGDNIISASNNMLWYNGPTLISLLES 537
+ + I SAL + + + L+ +++
Sbjct: 154 YKGEETPIIVGSALCA--LEQRDPELGLKSVQKLLDAVDT 191
>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus
thermophilus [TaxId: 274]}
Length = 225
Score = 130 bits (328), Expect = 7e-35
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 5/226 (2%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIA 798
VY++GAGPG +L+T++ RLL++A VVLYD L+ +L L P + + S
Sbjct: 3 VYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLALAP--GEKVYVGKEEGESEK 60
Query: 799 QYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAAS 858
Q I+R++++ A + VVRLKGGDPM+FGR EE+ L ++ + V+V+PG+T+ LA+
Sbjct: 61 QEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLASGL 120
Query: 859 ESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFL 918
+ L+ TLV MG AK+LL+LG
Sbjct: 121 PLTHRGLAHGF---AAVSGVLEGGGYPDLRPFARVPTLVVLMGVGRRVWIAKELLRLGRD 177
Query: 919 PTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLK 964
P P + VE S ++ L ++ + + P L+++G+ ++
Sbjct: 178 PREPTLFVERASTPKERRVHARLEEVAEGKVEVRPPALWILGEVVR 223
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and
5 {Salmonella typhimurium [TaxId: 90371]}
Length = 242
Score = 130 bits (326), Expect = 2e-34
Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 3/231 (1%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCP-KAKHIFVGKRFKKHSI 797
V ++GAGPG A L+T++G + +++AD+V+YD L++++++ L A +FVGKR H +
Sbjct: 3 VVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCV 62
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAAL--A 855
Q IN+I+++ A K VVRLKGGDP +FGR EEL L I V+PGITAA +
Sbjct: 63 PQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCS 122
Query: 856 AASESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKL 915
A S + S +V T + ++ TLV YMG N +KL+
Sbjct: 123 AYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIAF 182
Query: 916 GFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLKSH 966
G PV +VEN + Q++ +L L + Q E P L ++G+ +
Sbjct: 183 GMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALR 233
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix
[TaxId: 56636]}
Length = 289
Score = 131 bits (329), Expect = 3e-34
Identities = 34/245 (13%), Positives = 73/245 (29%), Gaps = 24/245 (9%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPK-AKHIFVGKRFKKHSI 797
+ ++G G + T+ +R+ADVV ++ L + + +
Sbjct: 5 LLLVGWGYAP-GMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRR 63
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
+R IV A +V + GDPM+ + + V+ IPG++ AA
Sbjct: 64 DLEERSREIVSRA-LDAVVAVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAAR 122
Query: 858 SESKQSLTKRNISRSVVLFTSSTM-----------LKNN-----YLKNIPISDTLVEYMG 901
+ S + + ++ L L L G
Sbjct: 123 GATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDERGVQLSPGQG 182
Query: 902 GNNIFLTAKKLLKLGFLPT-----TPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVL 956
+ + ++ + P V+V ++ + L L + +
Sbjct: 183 VSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYSI 242
Query: 957 FMIGK 961
+ +
Sbjct: 243 VIPAR 247
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase
(SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}
Length = 235
Score = 126 bits (318), Expect = 2e-33
Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 7/228 (3%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIA 798
VY++GAG G + +T++ R+L A+VVL+D L+ +L L K + + VGK
Sbjct: 5 VYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALA-KGELVPVGKEGYGGKTP 63
Query: 799 QYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAAS 858
Q I ++ A + +V RLKGGDPM+FGR EE AL++ I +V+PG+T+A+ A S
Sbjct: 64 QEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALS 123
Query: 859 ESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFL 918
LT R ++RS + T + + + + K+ L F
Sbjct: 124 ALGLPLTHRGLARSFAVATGHDPALPLPRADTLV------LLMPLHTLGGLKERLLERFP 177
Query: 919 PTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEKPVLFMIGKSLKSH 966
P TP+ ++ + + + DL P L ++GK + +
Sbjct: 178 PETPLALLARVGWPGEAVRLGRVEDLPGLGEGLPSPALLVVGKVVGLY 225
>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF
{Bacillus megaterium [TaxId: 1404]}
Length = 239
Score = 103 bits (256), Expect = 3e-25
Identities = 62/232 (26%), Positives = 119/232 (51%), Gaps = 12/232 (5%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLY-DALITNELLMLCPKAKHIFVGKRFKKHSI 797
+YIIGAGPG DLITV+G +LL++ADVVLY D+L++ +L+ + K +
Sbjct: 11 LYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGA-----EVLKTAGM 65
Query: 798 AQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAA 857
+ ++ + +VVR+ GDP ++G E++ LK+ + ++++PG+T+ AAA
Sbjct: 66 HLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAA 125
Query: 858 SESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIP----ISDTLVEYMGGNNIFLTAKKLL 913
+ ++ LT +++++V+L + + + T+ ++ K+ +
Sbjct: 126 AAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKKVMKEFI 185
Query: 914 KLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKI--FQFEKPVLFMIGKSL 963
G+ TPV+VV + ++KI R + DL + K + + G +L
Sbjct: 186 NAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWAL 237
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 100 bits (248), Expect = 2e-24
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 12/207 (5%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
+ + G VD GK+TL+ + + ++L K + NI +
Sbjct: 6 QPE--VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAET--NIGVCESC 61
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
E+ + R+ D PGHE M++GA+ D I+++ A++
Sbjct: 62 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
P QT+ H + ++ +K++II NK+D+++ K+F +
Sbjct: 122 PFPQP------QTREHFVALGIIGVKNLIIVQNKVDVVSKE--EALSQYRQIKQFTKGTW 173
Query: 500 FQNINTIPISALNGDNIISASNNMLWY 526
+N+ IP+SAL+ NI S + Y
Sbjct: 174 AENVPIIPVSALHKINIDSLIEGIEEY 200
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
{Escherichia coli [TaxId: 562]}
Length = 215
Score = 99.4 bits (247), Expect = 4e-24
Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 36/189 (19%)
Query: 38 NNPVLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETL 97
VL S G + V L L + P++ DTG+ FPE F D KL L
Sbjct: 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLFPETYRFIDELTDKLKLNL 100
Query: 98 IVRSVEDSIMKGTVRLRKPNTDSRNAAQSITLL-------ETIKEFKFDACIGGARRDEE 150
V +S R K + + +KE G RR++
Sbjct: 101 KVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS 160
Query: 151 KARAKERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIER 210
+RA + + + +V PI +W I+QY+++
Sbjct: 161 GSRANLPVLAIQRGV-------------------------FKVLPIIDWDNRTIYQYLQK 195
Query: 211 EKIILPSLY 219
+ L+
Sbjct: 196 HGLKYHPLW 204
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 93.1 bits (231), Expect = 2e-23
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 545 DKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNK 604
+ LRFPVQ V R +FRG+ G + SGI+ K D ++V PSGK + +K I
Sbjct: 3 NYTDLRFPVQYVNRPNL----NFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEG 58
Query: 605 SLDMAITGQSVTLIIKEYLDISRGNMLVSPFKRP 638
L+ A GQ+VTL +++ +DISRG++LV P
Sbjct: 59 ELEQAGPGQAVTLTMEDEIDISRGDLLVHADNVP 92
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 105
Score = 92.8 bits (230), Expect = 4e-23
Identities = 38/101 (37%), Positives = 63/101 (62%)
Query: 642 RSINANLCWLSEESLDLRRKYLLKHSTNQILSRILKINALLNINTQKWCPPKLLDLNDIG 701
+ +A L W++EE + +KY +K +T+ + I I +++NT + P L LN+IG
Sbjct: 4 DAFDAMLVWMAEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIG 63
Query: 702 CVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYII 742
V +++ PI++D Y + R+TG+FI+ID +T TVAA II
Sbjct: 64 RVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGTVAAGMII 104
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 195
Score = 92.2 bits (228), Expect = 7e-22
Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 27/209 (12%)
Query: 739 VYIIGAGPGAADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRFKKHSIA 798
++I+G+G T R ++ +A+V+ A + + S
Sbjct: 2 IWIVGSGTCRGQT-TERAKEIIERAEVIYGSRR-------ALELAGVVDDSRARILRSFK 53
Query: 799 QYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITAALAAAS 858
I RI+ + V + GDPM+ G + IK++ A
Sbjct: 54 GDEIRRIM--EEGREREVAVISTGDPMVAGLGRVLREIAEDVEIKIEPAISSVQVALARL 111
Query: 859 ESKQSLTKRNISRSVVLFTSSTMLKNNYLKNIPISDTLVEYMGGNNIFLTAKKLLKLGFL 918
+ S V L E + ++ + A L L
Sbjct: 112 ---------KVDLSEVAVVDCHAK--------DFDAELTELLKYRHLLILADSHFPLERL 154
Query: 919 PTTPVIVVENCSLSNQKITRLILLDLKKK 947
V+++EN + ++I ++ +
Sbjct: 155 GKRRVVLLENLCMEGERIREGNADSIELE 183
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 85.1 bits (210), Expect = 1e-18
Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 23/162 (14%)
Query: 327 FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESER 386
A +D GK+T R+L+ + I K V G + D +E ER
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRI----------HKIGEVHEG-----AATMDFMEQER 53
Query: 387 EQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSV 446
E+GITI A + I D PGH +T + D I++ D+S+
Sbjct: 54 ERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQ------- 106
Query: 447 NLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIV 488
+ Q++ A ++ I NKMD + R +
Sbjct: 107 GVEPQSETVWRQAEKYKVP-RIAFANKMDKTGADLWLVIRTM 147
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 82.0 bits (201), Expect = 3e-18
Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 17/197 (8%)
Query: 321 KHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTD 380
+ + + G VD GK+TL L + +R ++
Sbjct: 2 RQAEVNIGMVGHVDHGKTTLTKALTG--------VWTDTHSEELRRGITIKIGFADAEIR 53
Query: 381 GLESEREQGITIDVAYR-YFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
+ + Y + R+ D PGHE M+ GAS D I++I A++
Sbjct: 54 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 113
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
P QT+ H + ++ K+IIIA NK++L++ + K+F E
Sbjct: 114 PCPRP------QTREHLMALQIIGQKNIIIAQNKIELVDKEKA--LENYRQIKEFIEGTV 165
Query: 500 FQNINTIPISALNGDNI 516
+N IPISAL+G NI
Sbjct: 166 AENAPIIPISALHGANI 182
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 73.7 bits (181), Expect = 1e-16
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 539 NTNEKIDKKPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKD 598
+ K++ P P+ + G I G+IE+G IKKN ++V P + +
Sbjct: 1 HLERKVNA-PFIMPIASKYKDLGTI------LEGKIEAGSIKKNSNVLVMPINQTLEVTA 53
Query: 599 IQ-MLNKSLDMAITGQSVTLIIK-EYLDISRGNMLVSPFKRPV 639
I ++ + +I G V L ++ + D+ G +L S K PV
Sbjct: 54 IYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTST-KNPV 95
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 73.7 bits (181), Expect = 1e-16
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 547 KPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSL 606
KPLR P+Q V + I +GR+E+G+IK + P+G +K ++M ++ L
Sbjct: 2 KPLRLPLQDVYK----IGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQL 57
Query: 607 DMAITGQSVTLIIK--EYLDISRGNMLVSPFKRP 638
+ + G +V +K +I RGN+ P
Sbjct: 58 EQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDP 91
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 73.4 bits (180), Expect = 2e-16
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 547 KPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKSL 606
KPLR P+Q V IS +GR+ESG++K D ++ P+GK ++ I+ + +
Sbjct: 4 KPLRIPIQDVYS----ISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKM 59
Query: 607 DMAITGQSVTLIIK--EYLDISRGNMLVSPFKRP 638
D A G ++ ++ E DI RG+++ P P
Sbjct: 60 DKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPP 93
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 70.3 bits (172), Expect = 3e-15
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 547 KPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKND---CLIVEPSGKKATIKDIQMLN 603
KP PV+ V I+ GRIE G +K D + + P +K + ++M
Sbjct: 7 KPFLMPVEDVFT----ITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 62
Query: 604 KSLDMAITGQSVTLIIK--EYLDISRGNMLVSP 634
K+L I G +V ++++ ++ RG +L P
Sbjct: 63 KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 95
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 75.2 bits (184), Expect = 6e-15
Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 44/208 (21%)
Query: 313 EKKQSVFKKHSLLRFI-TAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGH 371
++ +S+ K + +R + VD GKSTL L+ + I S
Sbjct: 5 DQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGII-----------------SAA 47
Query: 372 NIDLSLLTDGLESEREQGITIDVAYRYFNTP----------------KRKFIIADTPGHE 415
+ TD + E+E+GITI + + D+PGH
Sbjct: 48 KAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHV 107
Query: 416 QYTRNMITGASTADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMD 475
++ + D ++++D + + QT+ A RI ++ +NK+D
Sbjct: 108 DFSSEVTAALRVTDGALVVVDTIE-------GVCVQTETVLRQALGERI-KPVVVINKVD 159
Query: 476 LINYNQIFYKRIVYAYKKFAEDIHFQNI 503
Y+ FA + N+
Sbjct: 160 RALLE--LQVSKEDLYQTFARTVESVNV 185
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 62.8 bits (153), Expect = 9e-13
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 547 KPLRFPVQLVARHCGHISKDFRG--YMGRIESGIIKKNDCLIVEPSG--KKATIKDIQML 602
KP P++ V S RG GR+E GIIK + + + +K+T ++M
Sbjct: 4 KPFLLPIEDV------FSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF 57
Query: 603 NKSLDMAITGQSVTLIIK--EYLDISRGNMLVSP 634
K LD G++V ++++ + +I RG +L P
Sbjct: 58 RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 91
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 233
Score = 66.1 bits (160), Expect = 2e-12
Identities = 31/233 (13%), Positives = 76/233 (32%), Gaps = 9/233 (3%)
Query: 737 AAVYIIGAGPG---AADLITVRGARLLRKADVVLY-DALITNELL-MLCPKAKHIFVGKR 791
A+Y++ G ++ ++R + D L + + +
Sbjct: 2 TALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFY 61
Query: 792 FKKHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGIT 851
+ I+ + A ++ V + G P + + + ++ +KV + G +
Sbjct: 62 PLNKHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPS 121
Query: 852 AALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYL--KNIPISDTLVEYMGGNNIFLTA 909
+ + + S + + + K L + S T +
Sbjct: 122 SIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKMI 181
Query: 910 KKLLKLGFLPTTPVIVVENCSLSNQKITRLILLDLKKKIFQFEK-PVLFMIGK 961
+ +L+ P T + + N + + I + D K I + K P +F++ K
Sbjct: 182 EDILQ-NCRPQTKLCIAANITCEGEFIQTRTVKDWKGHIPELSKIPCIFLLYK 233
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 61.9 bits (150), Expect = 2e-12
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 547 KPLRFPVQLVARHCGHISKDFRG--YMGRIESGIIKKNDCLIVEPSGKKATIKDIQMLNK 604
+ P+ G G I GI+K D L V P ++ IQ +
Sbjct: 5 SYFKMPLDHA------FPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKE 58
Query: 605 SLDMAITGQSVTLIIK--EYLDISRGNMLVSP 634
S+ A G V + I+ + I RG +L S
Sbjct: 59 SVMEAKAGDRVGMAIQGVDAKQIYRGCILTSK 90
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 64.2 bits (155), Expect = 7e-12
Identities = 23/227 (10%), Positives = 55/227 (24%), Gaps = 44/227 (19%)
Query: 331 GSVDDGKSTLIGRLLFDSKNIFIDQL----------------DAVSRTKYKRVMSGHNID 374
G+ GK+TL G ++ + D + +M
Sbjct: 7 GTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGP 66
Query: 375 LSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIIL 434
+ + + + +++ DTPG + G + +
Sbjct: 67 -NGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYP 125
Query: 435 IDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHI----IIAVNKMDLINYNQ-IFYKRIVY 489
+ LL + I A+NK+DL++ + +++
Sbjct: 126 LVVYISDPEILKK--PNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFE 183
Query: 490 AYKKFAEDIHF--------------------QNINTIPISALNGDNI 516
+ + + +SA +
Sbjct: 184 DIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF 230
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 57.5 bits (139), Expect = 6e-11
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 542 EKIDKKPL-RFPVQLVARHCGHISKDFRGYMGRIESGIIKKNDCLIVEPSGKKATIKDIQ 600
E + KKP + V+ V G +G +ESG+I V+ I I+
Sbjct: 2 EILSKKPAGKVVVEEVVNIMGK-----DVIIGTVESGMIGVGF--KVKGPSGIGGIVRIE 54
Query: 601 MLNKSLDMAITGQSVTLIIK-EYLDISRGNMLVSP 634
+ ++ AI G + + I+ + + +G++L
Sbjct: 55 RNREKVEFAIAGDRIGISIEGKIGKVKKGDVLEIY 89
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 57.7 bits (139), Expect = 1e-10
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 19/100 (19%)
Query: 552 PVQLVARHC-----GHISKDFRG--YMGRIESGIIKKNDCLIVEPSGK------------ 592
PV LV R G + +G G I G+ K + + V P +
Sbjct: 7 PVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPI 66
Query: 593 KATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGNMLV 632
I I+ ++ A G V + +++ + L+
Sbjct: 67 FTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLL 106
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 57.8 bits (139), Expect = 1e-10
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 546 KKPLRFPVQLV--ARHCGHISKDFRGYM--GRIESGIIKKNDCLIVEPSGK--------- 592
KP + V G + G + G I G +K D + + P
Sbjct: 6 NKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKY 65
Query: 593 ---KATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGNMLV 632
I +Q + ++ A G V + K +++G+++
Sbjct: 66 EPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMA 108
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 57.5 bits (139), Expect = 1e-10
Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 31/139 (22%)
Query: 551 FPVQLVARHCGHISKDFRGYM-----GRIESGIIKKNDCLIVEPSGKKATIKDIQMLNKS 605
P + + FR + +G+I++ L+ + T++ +Q ++
Sbjct: 3 KPASIRLIP-KLV---FRQSKPAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQDKGEN 58
Query: 606 LDMAITGQSVTLIIKEYL---DISRGNMLVSPFKRPVSLRSINANLCWLSEESLDLRRKY 662
L A GQ V + IK+ + I G+ L + E + ++
Sbjct: 59 LKSASRGQKVAMAIKDAVYGKTIHEGDTLYV----------------DIPENHYHILKEQ 102
Query: 663 LLKHSTN---QILSRILKI 678
L T+ ++ +I +I
Sbjct: 103 LSGDLTDEELDLMDKIAEI 121
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 55.0 bits (132), Expect = 1e-09
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 16/103 (15%)
Query: 546 KKPLRFPVQLV--ARHCGHISKDFRG--YMGRIESGIIKKNDCLIVEPSGK--------- 592
R V G KD +G G I G+ K D + + P K
Sbjct: 4 DATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFW 63
Query: 593 ---KATIKDIQMLNKSLDMAITGQSVTLIIKEYLDISRGNMLV 632
I + N L A G + + +++ + L
Sbjct: 64 KPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALT 106
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 54.1 bits (130), Expect = 1e-09
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 547 KPLRFPVQLVARHCGHISKDFRGYMGRIESGIIKKND--CLIVEPSGKKATIKDIQMLNK 604
KP PV+ I G +E GI+KK D + + + I+M +K
Sbjct: 6 KPFLLPVE----SVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61
Query: 605 SLDMAITGQSVTLIIK--EYLDISRGNMLVSP 634
SLD A G ++ +++ + D+ RG ++ P
Sbjct: 62 SLDRAEAGDNLGALVRGLKREDLRRGLVMAKP 93
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 52.6 bits (125), Expect = 8e-08
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 16/114 (14%)
Query: 324 LLR-FITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGL 382
++R G GK+TL LL+ + K +R TD
Sbjct: 1 MIRTVALVGHAGSGKTTLTEALLYKTG------------AKERRGRVEEGTTT---TDYT 45
Query: 383 ESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILID 436
+ T+ + + D PG+ + + ADA ++ +
Sbjct: 46 PEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVS 99
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 51.2 bits (121), Expect = 1e-07
Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 54/217 (24%)
Query: 331 GSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGI 390
G VD GK+TL+ + + + + +++ + E
Sbjct: 12 GHVDHGKTTLLDHIRGSA--VASREAGGITQHIGATEIPMDV-------------IEGIC 56
Query: 391 TIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLT 450
+ DTPGHE +T G + AD I+++D ++ + L
Sbjct: 57 GDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN 116
Query: 451 QTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINT----- 505
+ + ++A NK+D I+ ++ R + Q ++T
Sbjct: 117 ILRMYRT--------PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYEL 168
Query: 506 --------------------------IPISALNGDNI 516
IPISA+ G+ I
Sbjct: 169 VGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGI 205
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 46.6 bits (109), Expect = 3e-06
Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 37/197 (18%)
Query: 320 KKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLT 379
K+ + G +D GK+TL L + D+L
Sbjct: 3 FKN--INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLP---------------------- 38
Query: 380 DGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASK 439
+++GITID+ + F + + D PGH R +++ A ID +
Sbjct: 39 ----ESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI-------IDLAL 87
Query: 440 IKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIH 499
I + TQT H +I I I++ + + I+ + + +
Sbjct: 88 IVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQ--STHN 145
Query: 500 FQNINTIPISALNGDNI 516
+N + IPISA G +
Sbjct: 146 LKNSSIIPISAKTGFGV 162
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 45.8 bits (107), Expect = 5e-06
Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 30/192 (15%)
Query: 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLES 384
++ G + GKSTL +L + + V + + T G
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG--- 65
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
+RK + + ++ AD V+I++DA++
Sbjct: 66 -----------------LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ 108
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNIN 504
+ +R ++ NK DL+ + + Y +++ I + +
Sbjct: 109 DQRMAGLMERRGR--------ASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL- 159
Query: 505 TIPISALNGDNI 516
I SA G NI
Sbjct: 160 -IFTSADKGWNI 170
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 40.6 bits (94), Expect = 3e-04
Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 42/193 (21%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
+ + + G+ GK++ + R + F
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYA---DDSFTP----------------------------A 33
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
GI V Y N + K I DT G E+Y A I++ D + +
Sbjct: 34 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 93
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503
+++ +IK ++ L+ V + ++ +
Sbjct: 94 -----------NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF 142
Query: 504 NTIPISALNGDNI 516
SA + N+
Sbjct: 143 EFFEASAKDNINV 155
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 40.1 bits (93), Expect = 4e-04
Identities = 29/193 (15%), Positives = 55/193 (28%), Gaps = 42/193 (21%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
L + + G GK+ ++ R ++ F
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFS---EDAFNS----------------------------T 34
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
GI + + + K I DT G E++ A ++++ D + N
Sbjct: 35 FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT----N 90
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503
+ +I H +I NK D+ + Q+ +R I
Sbjct: 91 EKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEK-------LALDYGI 143
Query: 504 NTIPISALNGDNI 516
+ SA N+
Sbjct: 144 KFMETSAKANINV 156
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 39.8 bits (92), Expect = 5e-04
Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 43/194 (22%)
Query: 323 SLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGL 382
S+++ + G GKS L+ R + ++ F
Sbjct: 1 SIMKILLIGDSGVGKSCLLVRFV---EDKFNP---------------------------- 29
Query: 383 ESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKF 442
GI + N K K I DT G E++ A +I++ D + +
Sbjct: 30 SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT 89
Query: 443 NPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQN 502
++ +T ++ V + + + K+
Sbjct: 90 FTNIKQWFKTVNEHANDE-----AQLLLVGNKSDMETRVVTADQGEALAKEL-------G 137
Query: 503 INTIPISALNGDNI 516
I I SA N DN+
Sbjct: 138 IPFIESSAKNDDNV 151
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
C-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 107
Score = 38.4 bits (89), Expect = 5e-04
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 643 SINANLCWLSEES-LDLRRKYLLKHSTNQILSRILKINALLNINTQKWC--PPKLLDLND 699
A + + + L +L T + R+ ++ + L+ T + P+ L D
Sbjct: 3 EFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGD 62
Query: 700 IGCVTINIYEPISVDSYDNIRSTGSFILIDEITFQTVAAVYII 742
+ V +P+ V+ Y+ G F + D +TV I+
Sbjct: 63 VAIVKFKPIKPLCVEKYNEFPPLGRFAMRDM--GKTVGVGIIV 103
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 38.9 bits (89), Expect = 0.001
Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 19/140 (13%)
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGH-------EQYTRNMITGASTADAVIILID 436
+ + + +F +AD PG + + + ++ ++D
Sbjct: 29 APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLD 88
Query: 437 ASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAE 496
A+ L + + + ++A+NK+DL+ + K A+
Sbjct: 89 AADEPLKTLETLRKEVGAYDPALL---RRPSLVALNKVDLLEEEAV---------KALAD 136
Query: 497 DIHFQNINTIPISALNGDNI 516
+ + + +P+SAL G +
Sbjct: 137 ALAREGLAVLPVSALTGAGL 156
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 38.4 bits (88), Expect = 0.002
Identities = 29/193 (15%), Positives = 62/193 (32%), Gaps = 42/193 (21%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
L +F+ G+ GKS L+ + + + F D + ++ +
Sbjct: 5 LFKFLVIGNAGTGKSCLLHQFI---EKKFKDDSNHTIGVEFGSKI--------------- 46
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
K I DT G E++ + A +++ D + +
Sbjct: 47 -------------INVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY 93
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503
++ R ++ II+ NK DL ++ + ++ +
Sbjct: 94 NALTNWLTDARMLASQNI----VIILCGNKKDLDADREVTFLEASRFAQEN-------EL 142
Query: 504 NTIPISALNGDNI 516
+ SAL G+N+
Sbjct: 143 MFLETSALTGENV 155
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 37.9 bits (87), Expect = 0.002
Identities = 34/193 (17%), Positives = 55/193 (28%), Gaps = 42/193 (21%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
L + + G GKS L+ R +N F E
Sbjct: 4 LFKVVLIGDSGVGKSNLLSRFT---RNEFNL----------------------------E 32
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
S+ G+ + K I DT G E+Y R A +++ D
Sbjct: 33 SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDI----AK 88
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503
+ + H I++ NK DL + + N+
Sbjct: 89 HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-------EKNNL 141
Query: 504 NTIPISALNGDNI 516
+ I SAL+ N+
Sbjct: 142 SFIETSALDSTNV 154
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 36.7 bits (84), Expect = 0.005
Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 42/192 (21%)
Query: 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLES 384
L+ + G GKS+L+ R + F E
Sbjct: 8 LKILIIGESGVGKSSLLLRFT---DDTFDP----------------------------EL 36
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
G+ V + K K I DT G E++ + A VI++ D ++
Sbjct: 37 AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFV 96
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNIN 504
++ + ++ NK+D N + + +A K ++
Sbjct: 97 KLDNWLNELETYCTRN---DIVNMLVGNKIDKENREVDRNEGLKFARKH--------SML 145
Query: 505 TIPISALNGDNI 516
I SA D +
Sbjct: 146 FIEASAKTCDGV 157
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 36.1 bits (82), Expect = 0.011
Identities = 26/188 (13%), Positives = 51/188 (27%), Gaps = 12/188 (6%)
Query: 41 VLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVR 100
V++FSGG+DS L A + + + D G I KLG
Sbjct: 5 VVVFSGGQDSTTCLIQALQDY----DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKV 60
Query: 101 SVEDSIMK------GTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARA 154
+ + + P+ D+ T + A + +A
Sbjct: 61 LDVGLLNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVI 120
Query: 155 KERIFSFRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQYIEREKII 214
D G + + + + N + P+ + + W + + +
Sbjct: 121 TG--VCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPLMWLNKAETWALADYYQQL 178
Query: 215 LPSLYFAH 222
Y
Sbjct: 179 DTVRYHTL 186
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 35.6 bits (81), Expect = 0.014
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 31/193 (16%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
L++ + G GK+T + R N F + ++ +N + G
Sbjct: 5 LIKLLALGDSGVGKTTFLYRYT---DNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG-- 59
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
K + DT G E++ A +++ D + +
Sbjct: 60 ----------------KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSF 103
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503
+V I++ NK DL + ++ ++ ++ A+ I
Sbjct: 104 LNVR---NWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA----RELADKY---GI 153
Query: 504 NTIPISALNGDNI 516
SA G N+
Sbjct: 154 PYFETSAATGQNV 166
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 35.4 bits (80), Expect = 0.015
Identities = 38/184 (20%), Positives = 57/184 (30%), Gaps = 28/184 (15%)
Query: 336 GKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGITIDVA 395
GKSTLI RL K + + V+R + H I
Sbjct: 12 GKSTLIYRLT--GKKVRRGKRPGVTRKIIEIEWKNHKIIDM------------------- 50
Query: 396 YRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDAS-KIKFNPSVNLLTQTKR 454
F ++ + A D ++++D + +
Sbjct: 51 -PGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPI 109
Query: 455 HSIIAHLLRI--KHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALN 512
LR I+AVNK+D I Q + +KF + + IPISA
Sbjct: 110 DVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFL---AEKFEVPLSEIDKVFIPISAKF 166
Query: 513 GDNI 516
GDNI
Sbjct: 167 GDNI 170
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 35.2 bits (80), Expect = 0.016
Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 42/193 (21%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
L + + G+ GK+ L+ R + +F
Sbjct: 5 LFKIVLIGNAGVGKTCLVRRFT---QGLFPP----------------------------G 33
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
G+ + N K K I DT G E++ + +A+A+I+ D I
Sbjct: 34 QGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYD---ITCE 90
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503
S L + R ++ +++ + ++ Q++
Sbjct: 91 ESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA--------QDM 142
Query: 504 NTIPISALNGDNI 516
+ SA DN+
Sbjct: 143 YYLETSAKESDNV 155
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 35.2 bits (80), Expect = 0.031
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 19/100 (19%)
Query: 428 ADAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRI 487
D V L+DA P + R+ +I +L+ K I+ +NK D +
Sbjct: 16 IDIVYELVDAR----IP------MSSRNPMIEDILKNKPRIMLLNKADKADA-------- 57
Query: 488 VYAYKKFAEDIHFQNINTIPISALNGDNIISASNNMLWYN 527
+++ E Q I ++ I+++NG +
Sbjct: 58 -AVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL 96
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 34.1 bits (77), Expect = 0.034
Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 44/194 (22%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
+ ++I G + GKS L+ + + F+ +
Sbjct: 4 IFKYIIIGDMGVGKSCLLHQFT---EKKFMA----------------------------D 32
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK-F 442
G+ + K K I DT G E++ + A +++ D ++ +
Sbjct: 33 CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY 92
Query: 443 NPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQN 502
N + LT + + + II+ NK DL + Y+ K+FAE+
Sbjct: 93 NHLSSWLTDARNLTNPNTV-----IILIGNKADLEAQRDVTYEEA----KQFAEEN---G 140
Query: 503 INTIPISALNGDNI 516
+ + SA G+N+
Sbjct: 141 LLFLEASAKTGENV 154
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 33.9 bits (76), Expect = 0.048
Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 35/193 (18%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
+L+ I G GK++L+ R + + + Q A +
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYV---NDKYSQQYKATIGADFLTKE--------------- 43
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
+ DT G E++ + AD +++ D +
Sbjct: 44 ------------VTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSF 91
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503
++ + +I NK+D +I ++ K DI
Sbjct: 92 ENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL--- 148
Query: 504 NTIPISALNGDNI 516
SA N N+
Sbjct: 149 --FLTSAKNAINV 159
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 33.2 bits (74), Expect = 0.096
Identities = 36/191 (18%), Positives = 55/191 (28%), Gaps = 39/191 (20%)
Query: 327 FIT-AGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESE 385
FI G + GKSTL+ +LL + I I +
Sbjct: 7 FIAIVGRPNVGKSTLLNKLL--GQKISI------------------------------TS 34
Query: 386 REQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPS 445
R+ T + I DTPG + I A + D + F
Sbjct: 35 RKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVE 94
Query: 446 VNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINT 505
T + +I+AVNK+D + ++
Sbjct: 95 GTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLL------PHLQFLASQMNFLDI 148
Query: 506 IPISALNGDNI 516
+PISA G N+
Sbjct: 149 VPISAETGLNV 159
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 32.6 bits (73), Expect = 0.12
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 9/131 (6%)
Query: 387 EQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDA-SKIKFNPS 445
TI + K + D G + AVI ++D+ K + + +
Sbjct: 44 TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA 103
Query: 446 VNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINT 505
L + L+ +++ NK D + + ++ ++ +
Sbjct: 104 SKELHLMLQE----EELQDAALLVFANKQDQPGALSA----SEVSKELNLVELKDRSWSI 155
Query: 506 IPISALNGDNI 516
+ SA+ G+ I
Sbjct: 156 VASSAIKGEGI 166
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 32.4 bits (72), Expect = 0.14
Identities = 20/178 (11%), Positives = 40/178 (22%), Gaps = 18/178 (10%)
Query: 41 VLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVR 100
VL +SGG D+ ++L+ ++ +R F SK +
Sbjct: 4 VLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKE 63
Query: 101 SVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFS 160
+ +R + + +
Sbjct: 64 EFVRDFVFPMMRAG----------------AVYEGYYLLGTSIARPLIAKHLVRIAEEEG 107
Query: 161 FRDKFGQWNPKSQRPELWNLYNTRVHPGENIR--VFPISNWTELDIWQYIEREKIILP 216
K + L + P + S ++ Y E I +P
Sbjct: 108 AEAIAHGATGKGNDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVP 165
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 32.8 bits (73), Expect = 0.15
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 38 NNPVLL-FSGGKDSVVLLRLAEKAFRPSR-FPFPMVHIDTGHN 78
+ +L+ FSGG DS VLL + + +H+ G +
Sbjct: 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS 55
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 32.2 bits (72), Expect = 0.16
Identities = 28/194 (14%), Positives = 55/194 (28%), Gaps = 43/194 (22%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
+ + G GK+ L+ R F+
Sbjct: 6 AFKVMLVGDSGVGKTCLLVRFK---DGAFLAG---------------------------T 35
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIK-F 442
GI + K K + DT G E++ A A+++L D + F
Sbjct: 36 FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF 95
Query: 443 NPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQN 502
+ LT+ ++ L + + ++ +K A++
Sbjct: 96 DNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDG---------EKLAKEY---G 143
Query: 503 INTIPISALNGDNI 516
+ + SA G N+
Sbjct: 144 LPFMETSAKTGLNV 157
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 32.1 bits (72), Expect = 0.17
Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 46/232 (19%)
Query: 324 LLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLE 383
L + + G+ GKS L+ R + + + + +K
Sbjct: 6 LFKLLLIGNSGVGKSCLLLRFS---DDTYTNDYISTIGVDFKI----------------- 45
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
T+++ + K I DT G E++ + + +II+ D + +
Sbjct: 46 ------KTVELDGKTV-----KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF 94
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503
V + Q + +L++ L+ + V Y E +
Sbjct: 95 NGVKMWLQEIDRYATSTVLKL-----------LVGNKCDLKDKRVVEYDVAKEFADANKM 143
Query: 504 NTIPISALNGDNIISASNNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQL 555
+ SAL+ N+ A M + + N NE KK + V L
Sbjct: 144 PFLETSALDSTNVEDAFLTMAR----QIKESMSQQNLNETTQKKEDKGNVNL 191
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.0 bits (71), Expect = 0.17
Identities = 12/128 (9%), Positives = 34/128 (26%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
T KF D GH Q R + ++ L+DA+ + +
Sbjct: 29 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARV 88
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ + + ++ + ++ ++ + + +
Sbjct: 89 ELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMC 148
Query: 509 SALNGDNI 516
S + +
Sbjct: 149 SVVMRNGY 156
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.18
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 7/130 (5%)
Query: 387 EQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSV 446
T+ KF + D G ++ + +I ++D +
Sbjct: 39 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 98
Query: 447 NLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTI 506
Q I +R I+I NK DL + + + + + +N
Sbjct: 99 R---QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD----RNWYVQ 151
Query: 507 PISALNGDNI 516
P A +GD +
Sbjct: 152 PSCATSGDGL 161
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 31.9 bits (71), Expect = 0.18
Identities = 13/130 (10%), Positives = 35/130 (26%), Gaps = 7/130 (5%)
Query: 387 EQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSV 446
TI F + D G ++ +I ++D++ +
Sbjct: 27 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 86
Query: 447 NLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTI 506
+ + + +N +I K +++ + + +
Sbjct: 87 REELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH--RNWYI-----Q 139
Query: 507 PISALNGDNI 516
A +GD +
Sbjct: 140 ATCATSGDGL 149
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 32.2 bits (72), Expect = 0.19
Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 1/133 (0%)
Query: 384 SEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFN 443
++ + R F++AD PG + + I +
Sbjct: 29 ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVID 88
Query: 444 PSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNI 503
S + + ++ + + +I N++ + F E + +
Sbjct: 89 MSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-DDY 147
Query: 504 NTIPISALNGDNI 516
PISA+ + +
Sbjct: 148 PVFPISAVTREGL 160
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 32.2 bits (72), Expect = 0.22
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 41 VLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGH 77
++L SGG DS V L K VH +
Sbjct: 8 MVLLSGGIDSPVAAYLTMKRG----VSVEAVHFHSPP 40
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 31.6 bits (70), Expect = 0.23
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 41 VLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVR 100
VL +SGG D+ V+L+ + F + G V + + +
Sbjct: 5 VLAYSGGLDTSVILKWLCEK----GFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVED 60
Query: 101 SVED 104
+
Sbjct: 61 LRRE 64
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 31.5 bits (70), Expect = 0.24
Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 43/192 (22%)
Query: 325 LRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLES 384
LR + G + GKSTL+ RLL + + I D + ++ + + T G+ S
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 385 EREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNP 444
E + R ++ AD V+ ++DA
Sbjct: 61 ETNDLVERLGIERTLQEIEK-----------------------ADIVLFVLDA------- 90
Query: 445 SVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNIN 504
+ L RIK+ V + +I + I
Sbjct: 91 -----SSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRH-------- 137
Query: 505 TIPISALNGDNI 516
+ ISAL G+ +
Sbjct: 138 MVKISALKGEGL 149
>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella
typhimurium [TaxId: 90371]}
Length = 291
Score = 31.6 bits (71), Expect = 0.37
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 20 DWLESEAIHIMREVSAECNNPVLLFSGGKDSVVLLRLAEKAFR 62
S+ + + ++ N P ++ S G D + R A
Sbjct: 201 KGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAME 243
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 30.5 bits (67), Expect = 0.58
Identities = 19/208 (9%), Positives = 54/208 (25%), Gaps = 34/208 (16%)
Query: 309 TEAPEKKQSVFKKHSLLRFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVM 368
AP+ + + + AG + GKS+ + L + ++ +
Sbjct: 3 MSAPDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60
Query: 369 SGHNIDLSLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTA 428
+ R + P + ++ R +
Sbjct: 61 ADG------------------------KRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKR 96
Query: 429 DAVIILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIV 488
++ L+ I+ + I + +++ + K D + K +
Sbjct: 97 QSLQGLVVLMDIRHPL-----KDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR--KAQL 149
Query: 489 YAYKKFAEDIHFQNINTIPISALNGDNI 516
++ ++ S+L +
Sbjct: 150 NMVREAVLA-FNGDVQVETFSSLKKQGV 176
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 30.0 bits (66), Expect = 0.75
Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 7/128 (5%)
Query: 389 GITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNL 448
T+ + K I D G + + D +I ++D++ +
Sbjct: 31 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ- 89
Query: 449 LTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPI 508
+ + ++ L ++I NK DL + I +
Sbjct: 90 --RELQSLLVEERLAGATLLIFANKQDLPGALSC----NAIQEALELDSIRSHHWRIQGC 143
Query: 509 SALNGDNI 516
SA+ G+++
Sbjct: 144 SAVTGEDL 151
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.1 bits (66), Expect = 0.80
Identities = 26/186 (13%), Positives = 48/186 (25%), Gaps = 39/186 (20%)
Query: 331 GSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKRVMSGHNIDLSLLTDGLESEREQGI 390
G + GKSTL+ LL +R +GI
Sbjct: 12 GKPNVGKSTLLNNLLGVKVAPISP------------------------RPQTTRKRLRGI 47
Query: 391 TIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLT 450
+ + E + + + +AV+ ++D
Sbjct: 48 LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE------ 101
Query: 451 QTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISA 510
+ L+ I++ NK+D Y + K A +SA
Sbjct: 102 DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMK---------AYHELLPEAEPRMLSA 152
Query: 511 LNGDNI 516
L+ +
Sbjct: 153 LDERQV 158
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 1.6
Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 7/130 (5%)
Query: 387 EQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSV 446
TI +F++ D G E + T + + VI+++D +
Sbjct: 42 HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD---STDRERI 98
Query: 447 NLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTI 506
++ + + LR ++I NK D+ + + I +
Sbjct: 99 SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV----AEISQFLKLTSIKDHQWHIQ 154
Query: 507 PISALNGDNI 516
AL G+ +
Sbjct: 155 ACCALTGEGL 164
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.8 bits (66), Expect = 1.6
Identities = 32/276 (11%), Positives = 71/276 (25%), Gaps = 37/276 (13%)
Query: 268 LSNATTVEDIIKEISVTQITE--RGATRIDDQNSEASMEKRKKTEAPEKKQSVFKKHSLL 325
L N T+ + I+ + + + T ++ ++ + + + ++L
Sbjct: 1 LINEATLAESIRRLRQGERATLAQAMTLVESRHPR----HQALSTQLLDAIMPYCGNTLR 56
Query: 326 RFITAGSVDDGKSTLIGRLLFDSKNIFIDQLDAVSRTKYKR----------VMSGHNIDL 375
+T G+ GKST + + M+
Sbjct: 57 LGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAE 115
Query: 376 SLLTDGLESEREQGITIDV---AYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVI 432
+ + S G +I +T G Q +
Sbjct: 116 AAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDC----- 170
Query: 433 ILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVY--A 490
+ L+ + +I+ +NK D N+ + R +Y A
Sbjct: 171 -------FISLQIAGGGDDLQGI--KKGLMEVADLIV-INKDDGDNHTNVAIARHMYESA 220
Query: 491 YKKFAEDIHFQNINTIPISALNGDNIISASNNMLWY 526
+ SAL I + ++ +
Sbjct: 221 LHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 256
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 29.2 bits (65), Expect = 1.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 39 NPVLLFSGGKDSVVLLRLAEKA 60
+ +L+SGGKDS L A K+
Sbjct: 5 DVAVLYSGGKDSNYALYWALKS 26
>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 251
Score = 29.5 bits (66), Expect = 2.0
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 12/118 (10%)
Query: 678 INALLNINTQKWCPPKLLDLNDIGCVTINIYEPISVDSYDNIRST----GSFILIDEITF 733
INA N + + +D V + +P + + G F ++ +
Sbjct: 82 INAYYNNP--QVAREHGVIFSDAKRVEDRMNDPFIMSQNEVKGKKVGVVGHFPHLESL-L 138
Query: 734 QTVAAVYIIGAGPGAADLITVRGARLLRKADVVLYDA--LITN---ELLMLCPKAKHI 786
+ + + I+ P D +L + D V ++ LL L A+ I
Sbjct: 139 EPICDLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNARRI 196
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 28.8 bits (63), Expect = 2.2
Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 12/150 (8%)
Query: 376 SLLTDGLESEREQGITIDVAYRYFNTPKRKFIIADTPGHEQYTRN----MITGASTADAV 431
SLLT + + + D PGH + + T A +
Sbjct: 18 SLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL 77
Query: 432 IILIDASKIK--FNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVY 489
I ++D++ + L + I+IA NK +L +I
Sbjct: 78 IFMVDSTVDPKKLTTTAEFLVDILSI-TESSCENGIDILIACNKSELFTARPP--SKIKD 134
Query: 490 AYKKFAEDI---HFQNINTIPISALNGDNI 516
A + + + +++N + D
Sbjct: 135 ALESEIQKVIERRKKSLNEVERKINEEDYA 164
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 28.8 bits (63), Expect = 2.8
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 41 VLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNC 89
++ FSGG DSVVL + K F V + ++ + RD
Sbjct: 28 LIAFSGGVDSVVLTDVLLKLKN--YFSLKEVALAHFNHMLRESAERDEE 74
>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 230
Score = 28.5 bits (63), Expect = 3.3
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 13/79 (16%)
Query: 461 LLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNIISAS 520
+ R+ H + V ++ A A F + S
Sbjct: 20 IRRLDHAVGNVPELG-------------PALTYVAGFTGFHQFAEFTADDVGTAESGLNS 66
Query: 521 NNMLWYNGPTLISLLESLN 539
+ + L+ + E ++
Sbjct: 67 AVLASNDEMVLLPINEPVH 85
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 28.3 bits (62), Expect = 4.3
Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 10/118 (8%)
Query: 739 VYIIGAGPG---AADLITVRGAR--LLRKADVVLYDALIT-----NELLMLCPKAKHIFV 788
IIGAG A + G + + L++ N + A ++
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ 66
Query: 789 GKRFKKHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKV 846
F K ++A+Y I A + + G ++ + LK K
Sbjct: 67 NPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA 124
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 4.5
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 467 IIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISALNGDNI 516
+++ NK DL K I + I IS DNI
Sbjct: 107 VLVLGNKRDLPGALD----EKELIEKMNLSAIQDREICCYSISCKEKDNI 152
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 27.7 bits (60), Expect = 5.3
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 41 VLLFSGGKDSVVLLRLAEKA 60
+ FSGG D+ L +
Sbjct: 14 GIAFSGGLDTSAALLWMRQK 33
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.7 bits (60), Expect = 5.3
Identities = 21/167 (12%), Positives = 45/167 (26%), Gaps = 10/167 (5%)
Query: 41 VLLFSGGKDSVVLLRLAEKAFRPSRFPFPMVHIDTGHNFPEVISFRDNCISKLGETLIVR 100
+L SGG DS V L +A + + + N E + D G ++
Sbjct: 24 ILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVL--DMFGDHFGLNIVHV 81
Query: 101 SVEDSIMKGTVRLRKPNTDSRNAAQSITLLETIKEFKFDACIGGARRDEEKARAKERIFS 160
ED + P + + + + K D +
Sbjct: 82 PAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKL--------EDVKWLAQGTIYPD 133
Query: 161 FRDKFGQWNPKSQRPELWNLYNTRVHPGENIRVFPISNWTELDIWQY 207
+ K+ + + + V P+ + ++ +
Sbjct: 134 VIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKI 180
>d1ev13_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
echovirus 1 [TaxId: 46633]}
Length = 239
Score = 27.8 bits (62), Expect = 5.9
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 521 NNMLWYNGPTLISLLESLNTNEKIDKKPLRFPVQLVARHC------GHISKDFRGYMGRI 574
NN ++ + L+TN + F + A G I + + G I
Sbjct: 56 NNDSAAKVSSMEAYRVELSTNTNAGTQVFGFQLNPGAESVMNRTLMGEILNYYAHWSGSI 115
Query: 575 E 575
+
Sbjct: 116 K 116
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.6 bits (60), Expect = 5.9
Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 7/126 (5%)
Query: 391 TIDVAYRYFNTPKRKFIIADTPGHEQYTRNMITGASTADAVIILIDASKIKFNPSVNLLT 450
T + + K + D G + + D +I +ID
Sbjct: 47 TQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID---SADRKRFEETG 103
Query: 451 QTKRHSIIAHLLRIKHIIIAVNKMDLINYNQIFYKRIVYAYKKFAEDIHFQNINTIPISA 510
Q + L ++I NK DL+ A I + SA
Sbjct: 104 QELTELLEEEKLSCVPVLIFANKQDLLTAAP----ASEIAEGLNLHTIRDRVWQIQSCSA 159
Query: 511 LNGDNI 516
L G+ +
Sbjct: 160 LTGEGV 165
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.2 bits (60), Expect = 6.2
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 8/124 (6%)
Query: 738 AVYIIG-AGPG----AADLITVRGARLLRKADVVLYDALITNELLMLCPKAKHIFVGKRF 792
V + G +G G A DLI + + + +Y + N L + F+ R
Sbjct: 17 GVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEIY--RLGNRLFGRAQEVAKKFMEIRG 73
Query: 793 KKHSIAQYIINRIIVKCAFKYNLVVRLKGGDPMLFGRTDEELNALKKYNIKVKVIPGITA 852
+ I K + L+V L + + LKK + +
Sbjct: 74 LGIINVERFYGLQITKQRTEIQLMVNLLSLEKQTTVTFERLGTELKKQRLLGVDLSFYEI 133
Query: 853 ALAA 856
++
Sbjct: 134 PISP 137
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
{Helicobacter pylori [TaxId: 210]}
Length = 255
Score = 27.6 bits (60), Expect = 6.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 VLLFSGGKDSVVLLRLAEKAFRPSRFPFPM 70
V SGG DS V+ L +K F+ + M
Sbjct: 27 VYGLSGGLDSAVVGVLCQKVFKENAHALLM 56
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.5 bits (60), Expect = 6.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 41 VLLFSGGKDSVVLLRLAEKAFRPSR 65
VL SGG+DS + +L + A R
Sbjct: 43 VLGISGGQDSTLAGKLCQMAINELR 67
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.3 bits (59), Expect = 7.2
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 375 LSLLTDGLESEREQGITIDVAYR--YFNTPKRKFIIADTPGHEQYTRNMITGASTADAVI 432
L G + + IT A N +I + + S+A AV+
Sbjct: 17 FVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 76
Query: 433 ILIDASKIKFNPSVNLLTQTKRHSIIAHLLRIKHIIIAVNKMDLIN 478
++D++ + + L ++IA NK D+
Sbjct: 77 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 26.9 bits (59), Expect = 7.4
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 610 ITGQSVTLIIKEYLDISRGNMLVSPFKRP 638
T + V ++ + +G+ L+SP K+
Sbjct: 117 FTPEGVAERAQKTIAFYKGDKLISPLKKA 145
>d1nara_ c.1.8.5 (A:) Seed storage protein {Vicia narbonensis,
Narbonin [TaxId: 3912]}
Length = 289
Score = 27.4 bits (60), Expect = 9.2
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 832 EELNALKKYNIKVKVIPGI---TAALAAASESKQSLTKRNISRSVVLFTSSTMLKNNYLK 888
E++ LK+ + +VKV+ I + ++ + N +
Sbjct: 66 EKVKNLKRRHPEVKVVISIGGRGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLID 125
Query: 889 NIPISDTLVEYMGGNNIFLTAKKLLK 914
I D E++ + F T L
Sbjct: 126 GI---DIHYEHIRSDEPFATLMGQLI 148
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 324
Score = 27.3 bits (59), Expect = 9.5
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 2 NNFKNDIFYKNNLNNLYLDWLESEAIHIMREVSAECNNPV-LLFSGGKDSVVLLRLAEKA 60
+ K+++ KN L D S H+M +V P +L SGG DS ++ + +K
Sbjct: 7 DAVKDNVTDKNELRQALED---SVKSHLMSDV------PYGVLLSGGLDSSIISAITKKY 57
Query: 61 FRPSRFPFPMVHIDTGHNFPEVISFRDN 88
+ +
Sbjct: 58 AARRVEDQERSEAWWPQLHSFAVGLPGS 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.397
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,600,623
Number of extensions: 177675
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 103
Length of query: 967
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 873
Effective length of database: 1,116,976
Effective search space: 975120048
Effective search space used: 975120048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.4 bits)