BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3752
(1012 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P87|B Chain B, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AVY|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AW7|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2P|B Chain B, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2U|B Chain B, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOU|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|2QOW|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2QOY|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QP0|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QAL|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAN|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QB9|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBB|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBD|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBF|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBH|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBJ|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4K|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4M|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2VHO|B Chain B, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
pdb|2VHP|B Chain B, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
pdb|3DF1|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3DF3|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3J00|B Chain B, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|4ADV|B Chain B, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
pdb|3J0U|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0V|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0X|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J0Z|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J10|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J13|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
Length = 240
Score = 234 bits (597), Expect = 2e-61, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 167/240 (69%), Gaps = 8/240 (3%)
Query: 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
+++AGVHFGHQTR+WNPKM +IFG RNK+HIINLEKT+ M+ +A+ + ++ KG +L
Sbjct: 8 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 67
Query: 236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
FVGTKR A + + A+ F++ RWLGG+LTN+KT++ SI+RLK+++ +G+ K
Sbjct: 68 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 127
Query: 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
L+KKEAL+ R+ KL +GGIK+M +PDA+F+ID + A+ EA L IP+ +VD
Sbjct: 128 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 187
Query: 356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 415
TN PDG+++VIPGNDD+ +++ LY + A TV E RS+ LA + +++ +EA
Sbjct: 188 TNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRSQDLAS--QAEESFVEA 239
>pdb|1VS5|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS7|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3E1A|B Chain B, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|B Chain B, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
pdb|3I1M|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1O|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Q|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1S|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Z|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I21|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KC4|B Chain B, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
pdb|3OR9|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
pdb|3ORA|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3IZV|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
pdb|3SFS|B Chain B, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOQ|B Chain B, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAQ|B Chain B, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAS|B Chain B, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 241
Score = 234 bits (596), Expect = 2e-61, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 167/240 (69%), Gaps = 8/240 (3%)
Query: 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
+++AGVHFGHQTR+WNPKM +IFG RNK+HIINLEKT+ M+ +A+ + ++ KG +L
Sbjct: 9 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 68
Query: 236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
FVGTKR A + + A+ F++ RWLGG+LTN+KT++ SI+RLK+++ +G+ K
Sbjct: 69 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 128
Query: 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
L+KKEAL+ R+ KL +GGIK+M +PDA+F+ID + A+ EA L IP+ +VD
Sbjct: 129 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 188
Query: 356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 415
TN PDG+++VIPGNDD+ +++ LY + A TV E RS+ LA + +++ +EA
Sbjct: 189 TNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRSQDLAS--QAEESFVEA 240
>pdb|2GY9|B Chain B, Structure Of The 30s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYB|B Chain B, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 236
Score = 234 bits (596), Expect = 2e-61, Method: Composition-based stats.
Identities = 112/240 (46%), Positives = 167/240 (69%), Gaps = 8/240 (3%)
Query: 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
+++AGVHFGHQTR+WNPKM +IFG RNK+HIINLEKT+ M+ +A+ + ++ KG +L
Sbjct: 4 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 63
Query: 236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
FVGTKR A + + A+ F++ RWLGG+LTN+KT++ SI+RLK+++ +G+ K
Sbjct: 64 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 123
Query: 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
L+KKEAL+ R+ KL +GGIK+M +PDA+F+ID + A+ EA L IP+ +VD
Sbjct: 124 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 183
Query: 356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 415
TN PDG+++VIPGNDD+ +++ LY + A TV E RS+ LA + +++ +EA
Sbjct: 184 TNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRSQDLAS--QAEESFVEA 235
>pdb|3FIH|B Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|2WWL|B Chain B, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 30s, The P-Site
Trna And The Tnac Leader Peptide (Part 1 Of 2).
pdb|3OFO|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFP|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3OFA|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The First 70s Ribosome.
pdb|3OFB|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The Second 70s Ribosome.
pdb|3OFX|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFY|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
pdb|3OAQ|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OAR|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|2YKR|B Chain B, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
pdb|4A2I|B Chain B, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
pdb|3J18|B Chain B, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
pdb|4GD1|B Chain B, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|4GD2|B Chain B, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 218
Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 157/224 (70%), Gaps = 6/224 (2%)
Query: 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
+++AGVHFGHQTR+WNPKM +IFG RNK+HIINLEKT+ M+ +A+ + ++ KG +L
Sbjct: 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60
Query: 236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
FVGTKR A + + A+ F++ RWLGG+LTN+KT++ SI+RLK+++ +G+ K
Sbjct: 61 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 120
Query: 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
L+KKEAL+ R+ KL +GGIK+M +PDA+F+ID + A+ EA L IP+ +VD
Sbjct: 121 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 180
Query: 356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRS 399
TN PDG+++VIPGNDD+ +++ LY + A TV E RS
Sbjct: 181 TNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRS 218
>pdb|4HOJ|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Neisseria Gonorrhoeae, Target Efi-501841, With Bound
Glutathione
Length = 210
Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 103/178 (57%), Positives = 135/178 (75%), Gaps = 2/178 (1%)
Query: 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
MDFEI+DID++NKP+++ MNPY QVP+LVERDL+L+ESNIINEYIDERFP+PQLM DP
Sbjct: 27 MDFEIKDIDIYNKPEDLAVMNPYNQVPVLVERDLVLHESNIINEYIDERFPHPQLMPGDP 86
Query: 61 XXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYM 120
EKE+F H+ +LEN + K +ARE I + L L+P F K+KY+
Sbjct: 87 VMRGRGRLVLYRMEKELFNHVQVLENP--AAANKEQAKAREAIGNGLTMLSPSFSKSKYI 144
Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQ 178
LG++FSM+DV +APLLWRLD+Y + L KSA+PL+KYAERIF R +++E+LTPAEK M+
Sbjct: 145 LGEDFSMIDVALAPLLWRLDHYDVKLGKSAAPLLKYAERIFQREAFIEALTPAEKAMR 202
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I95|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1I96|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|2ZM6|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
Length = 255
Score = 209 bits (532), Expect = 7e-54, Method: Composition-based stats.
Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
+++++AGVHFGH+ + WNPK + YI+ RN IHII+L+KT+ E+ R+I L GT
Sbjct: 7 KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 66
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
+LFVGTK+QA+ ++ EA RAGMP+++QRWLGG+LTNFKTI + RL+E++ + I
Sbjct: 67 ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 126
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
+ KKE + + +L + + G + + +PDAIF++D AV EA KL IP+I +
Sbjct: 127 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 186
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
DT+ PD ++Y+IPGNDD+ +SI L VD + A+
Sbjct: 187 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 225
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
pdb|1HR0|B Chain B, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNW|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1HNZ|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1GIX|E Chain E, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1IBK|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1IBL|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1JGO|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGQ|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1J5E|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1N32|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
pdb|1N33|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
pdb|1N34|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
pdb|1N36|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
pdb|1ML5|E Chain E, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1XMO|B Chain B, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
pdb|1XMQ|B Chain B, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
pdb|1XNQ|B Chain B, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
pdb|1XNR|B Chain B, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
pdb|1YL4|E Chain E, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
pdb|2B64|B Chain B, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|2B9M|B Chain B, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
pdb|2B9O|B Chain B, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2F4V|B Chain B, 30s Ribosome + Designer Antibiotic
pdb|2HHH|B Chain B, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
pdb|2J00|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4).
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule I.
pdb|2J02|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4)
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule Ii.
pdb|2HGI|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
pdb|2HGP|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
pdb|2HGR|E Chain E, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
pdb|2OW8|CC Chain c, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
2ow8, Contains The 30s Ribosome Subunit, Two Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File
1vsa.
pdb|2UU9|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gug-codon In The
A-site And Paromomycin.
pdb|2UUA|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guc-Codon In The
A-Site And Paromomycin.
pdb|2UUB|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guu-Codon In The
A-Site And Paromomycin.
pdb|2UUC|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gua-codon In The
A-site And Paromomycin.
pdb|2UXC|B Chain B, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Ucgu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2UXB|B Chain B, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Gggu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2V46|B Chain B, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
pdb|2V48|B Chain B, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
pdb|2UXD|B Chain B, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Cggg In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2QNH|CC Chain c, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 2qnh, Contains The 30s
Ribosome Subunit, Two Trna, And Mrna Molecules. 50s
Ribosome Subunit Is In The File 1vsp.
pdb|2OM7|N Chain N, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2VQE|B Chain B, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
pdb|2VQF|B Chain B, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
pdb|3D5A|B Chain B, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5C|B Chain B, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1E|B Chain B, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
pdb|3F1G|B Chain B, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|2WDG|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule I.
pdb|2WDH|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule Ii.
pdb|2WDK|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule I.
pdb|2WDM|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule Ii.
pdb|2WH1|B Chain B, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH3|B Chain B, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome). This File Contains The
30s Subunit.
pdb|3HUW|B Chain B, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule I.
pdb|3HUY|B Chain B, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule Ii.
pdb|2WRI|B Chain B, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|B Chain B, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2WRN|B Chain B, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|B Chain B, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4).
pdb|3KIQ|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 1 Of 4)
pdb|3KIS|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 3 Of 4)
pdb|3KIU|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 1 Of 4)
pdb|3KIX|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 3 Of 4)
pdb|3KNH|B Chain B, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule I
pdb|3KNJ|B Chain B, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule Ii'
pdb|3KNL|B Chain B, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule I
pdb|3KNN|B Chain B, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule Ii
pdb|3I8G|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s
Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8H|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s
Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9B|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B.
The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9D|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A.
The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9R|B Chain B, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9T|B Chain B, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XFZ|B Chain B, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
pdb|2XG1|B Chain B, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
pdb|3OTO|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
pdb|3OGE|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OGY|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHC|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHD|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHY|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI0|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI2|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI4|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQD|B Chain B, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XSY|B Chain B, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|B Chain B, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0U|B Chain B, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|B Chain B, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Y|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|B Chain B, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|B Chain B, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVO|B Chain B, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3T1H|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
pdb|3T1Y|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
pdb|3UXS|B Chain B, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXT|B Chain B, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.'
pdb|3TVF|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVG|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3UYD|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYF|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ3|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ4|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ6|E Chain E, Structure Analysis Of Ribosomal Decoding. This Entry
Contains The 30s Ribosomal Subunit Of The First 70s
Molecule In The Asymmetric Unit For The Cognate Trna-Tyr
Complex
pdb|3UZ7|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZG|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZI|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZL|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZM|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABR|B Chain B, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DH9|B Chain B, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHB|B Chain B, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V22|B Chain B, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 1st Ribosome In The Asu
pdb|3V24|B Chain B, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 2nd Ribosome In The Asu
pdb|3V26|B Chain B, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 1st Ribosome In The Asu
pdb|3V28|B Chain B, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 2nd Ribosome In The Asu
pdb|3V2C|B Chain B, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 1st Ribosome In The Asu
pdb|3V2E|B Chain B, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 2nd Ribosome In The Asu
pdb|4AQY|B Chain B, Structure Of Ribosome-Apramycin Complexes
pdb|4DR1|B Chain B, Crystal Structure Of The Apo 30s Ribosomal Subunit From
Thermus Thermophilus (hb8)
pdb|4DR2|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR3|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Streptomycin Bound
pdb|4DR4|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Cognate Transfer Rna
Anticodon Stem-loop And Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR5|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Cognate Transfer Rna Anticodon Stem-loop And
Streptomycin Bound
pdb|4DR6|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Near-cognate Transfer Rna
Anticodon Stem-loop Mismatched At The First Codon
Position And Streptomycin Bound
pdb|4DR7|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Near-cognate Transfer Rna Anticodon Stem-loop
Mismatched At The Second Codon Position, And
Streptomycin Bound
pdb|4G5K|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5M|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4G5T|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5V|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4DUY|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c
pdb|4DUZ|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c, Bound
With Streptomycin
pdb|4DV0|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g
pdb|4DV1|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g, Bound
With Streptomycin
pdb|4DV2|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a
pdb|4DV3|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a, Bound
With Streptomycin
pdb|4DV4|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g
pdb|4DV5|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g, Bound
With Streptomycin
pdb|4DV6|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g
pdb|4DV7|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g, Bound
With Streptomycin
Length = 256
Score = 209 bits (532), Expect = 7e-54, Method: Composition-based stats.
Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
+++++AGVHFGH+ + WNPK + YI+ RN IHII+L+KT+ E+ R+I L GT
Sbjct: 8 KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 67
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
+LFVGTK+QA+ ++ EA RAGMP+++QRWLGG+LTNFKTI + RL+E++ + I
Sbjct: 68 ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 127
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
+ KKE + + +L + + G + + +PDAIF++D AV EA KL IP+I +
Sbjct: 128 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 187
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
DT+ PD ++Y+IPGNDD+ +SI L VD + A+
Sbjct: 188 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 226
>pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
pdb|1PNX|B Chain B, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
pdb|1VOQ|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOS|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOV|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOX|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOZ|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|3MR8|B Chain B, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|3MS0|B Chain B, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s).
pdb|3PYN|B Chain B, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYQ|B Chain B, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The Second 70s
Ribosome.
pdb|3PYS|B Chain B, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYU|B Chain B, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The Second 70s Ribosome
Length = 234
Score = 209 bits (531), Expect = 8e-54, Method: Composition-based stats.
Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
+++++AGVHFGH+ + WNPK + YI+ RN IHII+L+KT+ E+ R+I L GT
Sbjct: 2 KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 61
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
+LFVGTK+QA+ ++ EA RAGMP+++QRWLGG+LTNFKTI + RL+E++ + I
Sbjct: 62 ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 121
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
+ KKE + + +L + + G + + +PDAIF++D AV EA KL IP+I +
Sbjct: 122 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 181
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
DT+ PD ++Y+IPGNDD+ +SI L VD + A+
Sbjct: 182 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220
>pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
Length = 235
Score = 209 bits (531), Expect = 9e-54, Method: Composition-based stats.
Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
+++++AGVHFGH+ + WNPK + YI+ RN IHII+L+KT+ E+ R+I L GT
Sbjct: 2 KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 61
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
+LFVGTK+QA+ ++ EA RAGMP+++QRWLGG+LTNFKTI + RL+E++ + I
Sbjct: 62 ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 121
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
+ KKE + + +L + + G + + +PDAIF++D AV EA KL IP+I +
Sbjct: 122 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 181
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
DT+ PD ++Y+IPGNDD+ +SI L VD + A+
Sbjct: 182 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220
>pdb|2E5L|B Chain B, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via
The Shine- Dalgarno Interaction
Length = 227
Score = 208 bits (529), Expect = 1e-53, Method: Composition-based stats.
Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
+++++AGVHFGH+ + WNPK + YI+ RN IHII+L+KT+ E+ R+I L GT
Sbjct: 7 KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 66
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
+LFVGTK+QA+ ++ EA RAGMP+++QRWLGG+LTNFKTI + RL+E++ + I
Sbjct: 67 ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 126
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
+ KKE + + +L + + G + + +PDAIF++D AV EA KL IP+I +
Sbjct: 127 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 186
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
DT+ PD ++Y+IPGNDD+ +SI L VD + A+
Sbjct: 187 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 225
>pdb|1X18|E Chain E, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 231
Score = 202 bits (514), Expect = 8e-52, Method: Composition-based stats.
Identities = 98/219 (44%), Positives = 147/219 (67%), Gaps = 3/219 (1%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
+++++AGVHFGH+ + WNPK + YI+ RN IHII+L+KT+ E+ R+I L GT
Sbjct: 2 KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 61
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
+LFVGTK+QA+ ++ EA RAGMP+++QRWLGG+LTNFKTI+ + RL+E++ + I
Sbjct: 62 ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTIQ-RVHRLEELEALFASPEI 120
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
+ KKE L + +L + + G + + +PDAIF++D AV EA KL IP+I +
Sbjct: 121 EERPKKEQRL--HELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 178
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
DT+ PD ++Y+IPGNDD+ +SI L VD + A+
Sbjct: 179 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 217
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|B Chain B, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|C Chain C, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
Length = 239
Score = 176 bits (445), Expect = 8e-44, Method: Composition-based stats.
Identities = 93/182 (51%), Positives = 119/182 (65%)
Query: 641 NICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYI 700
NI RG+S + + DR+TADY G AT+ N+LAL D GI + V SA+S ++ E+Y
Sbjct: 57 NIFRGVSAQAGSXDRATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETYA 116
Query: 701 PLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGIYNSDPNKC 760
AI+YLEEGKVVIFA G GNPFFTTD VDG+Y +DP K
Sbjct: 117 RPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEXNCDVXLKATNVDGVYTADPKKD 176
Query: 761 LSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 820
SA Y+ ITFDE + K L++ D+TAF+ CR++KL I VF I K G+LKRVI G++EGTL
Sbjct: 177 PSATRYETITFDEALLKNLKVXDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTL 236
Query: 821 VY 822
V+
Sbjct: 237 VH 238
>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
Length = 243
Score = 175 bits (443), Expect = 1e-43, Method: Composition-based stats.
Identities = 97/236 (41%), Positives = 126/236 (53%), Gaps = 2/236 (0%)
Query: 586 EKEYSLAVLKAQQLGEALMKGDAYXXXXXXXXXXXXXXXXXXXXXXXLAIVIGGGNICRG 645
E Y +LK GEALM Y +A+VIGGGNI RG
Sbjct: 6 ELSYRRILLKLS--GEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRG 63
Query: 646 ISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI 705
+DR T D+MGMLAT+IN+LA+ D L K G VMSAI I E +I AI
Sbjct: 64 AGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAI 123
Query: 706 KYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGIYNSDPNKCLSAII 765
++LE+G++ IFA G GNPFFTTD VDG+Y+ DP K A+
Sbjct: 124 RHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVR 183
Query: 766 YKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
Y +T+DEVI + LE+MD+ AF+ RD LP+R+F + + G L R++ G GTLV
Sbjct: 184 YDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLV 239
>pdb|3BBN|B Chain B, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 231
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 128/220 (58%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
E++M+AGVHFGH TR WNP+MS YI IHIINL +T +A ++
Sbjct: 7 EEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQ 66
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
L VGTK +A +A A+RA +++++WLGG+LTN+ T +T + + +++ + T G +
Sbjct: 67 FLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRL 126
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
+L K++A + R+ L +GGIK M +PD + I+D A+ E I L IP I +
Sbjct: 127 ARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICL 186
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
+DTN +PD + IP NDD+ SI L +V A + ++
Sbjct: 187 IDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRS 226
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp
pdb|2BND|B Chain B, The Structure Of E.Coli Ump Kinase In Complex With Udp
Length = 241
Score = 162 bits (410), Expect = 1e-39, Method: Composition-based stats.
Identities = 80/191 (41%), Positives = 119/191 (62%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
+ +VIGGGN+ RG ++R D+MGMLAT++N LA+ D L+++ + + +MSAI +
Sbjct: 51 VGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPL 110
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
+SY AI L +VVI + G GNPFFTTD VDG+
Sbjct: 111 NAVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGV 170
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
+ +DP K +A +Y+++T+ EV+ K+L++MD AF+ RD KLPIRVF++ K GAL+RV+
Sbjct: 171 FTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVV 230
Query: 813 EGKNEGTLVYE 823
G+ EGTL+ E
Sbjct: 231 MGEKEGTLITE 241
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2BNE|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2V4Y|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|C Chain C, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|D Chain D, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|E Chain E, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|F Chain F, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
Length = 241
Score = 162 bits (409), Expect = 1e-39, Method: Composition-based stats.
Identities = 80/191 (41%), Positives = 119/191 (62%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
+ +VIGGGN+ RG ++R D+MGMLAT++N LA+ D L+++ + + +MSAI +
Sbjct: 51 VGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPL 110
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
+SY AI L +VVI + G GNPFFTTD VDG+
Sbjct: 111 NGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGV 170
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
+ +DP K +A +Y+++T+ EV+ K+L++MD AF+ RD KLPIRVF++ K GAL+RV+
Sbjct: 171 FTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVV 230
Query: 813 EGKNEGTLVYE 823
G+ EGTL+ E
Sbjct: 231 MGEKEGTLITE 241
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 159 bits (402), Expect = 7e-39, Method: Composition-based stats.
Identities = 75/189 (39%), Positives = 115/189 (60%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
+A+VIGGGN RG + ++R+ +DYMGML T++NSLAL D L K GI++ V +AI++
Sbjct: 91 IAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITM 150
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
+ E Y+PL A+++LE+G+VVIF G+G P+F+TD VDG+
Sbjct: 151 GQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGV 210
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
+ DP A + ++ EV+ + L + D+TAFS C D +PI VF+++ G + R +
Sbjct: 211 FAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAV 270
Query: 813 EGKNEGTLV 821
G+ GTLV
Sbjct: 271 RGEKIGTLV 279
>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase
pdb|2A1F|B Chain B, Crystal Structure Of Uridylate Kinase
pdb|2A1F|C Chain C, Crystal Structure Of Uridylate Kinase
pdb|2A1F|D Chain D, Crystal Structure Of Uridylate Kinase
pdb|2A1F|E Chain E, Crystal Structure Of Uridylate Kinase
pdb|2A1F|F Chain F, Crystal Structure Of Uridylate Kinase
Length = 247
Score = 156 bits (395), Expect = 5e-38, Method: Composition-based stats.
Identities = 78/191 (40%), Positives = 117/191 (61%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
+++V+GGGN+ RG ++R D+MGMLAT++N LA+ D L ++ + + +MSA +
Sbjct: 50 VSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQL 109
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
++Y AIK L E +VVIF+ G GNPFFTTD VDG+
Sbjct: 110 NGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGV 169
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
Y+ DP K A +YK +++ EVI K+L++MD +AF+ RD +PIRVF++ K GAL++V+
Sbjct: 170 YDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVV 229
Query: 813 EGKNEGTLVYE 823
G EGT + E
Sbjct: 230 TGTEEGTTICE 240
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp
pdb|2BNF|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Utp
Length = 241
Score = 148 bits (373), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/191 (39%), Positives = 110/191 (57%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
+ +VIGGGN+ RG +R D+ G LAT+ N LA D L+++ + + + SAI +
Sbjct: 51 VGVVIGGGNLFRGAGLAKAGXNRVVGDHXGXLATVXNGLAXRDALHRAYVNARLXSAIPL 110
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
+SY AI L +VVI + G GNPFFTTD VDG+
Sbjct: 111 NGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGV 170
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
+ +DP K +A Y+++T+ EV+ K+L++ D AF+ RD KLPIRVF+ K GAL+RV+
Sbjct: 171 FTADPAKDPTATXYEQLTYSEVLEKELKVXDLAAFTLARDHKLPIRVFNXNKPGALRRVV 230
Query: 813 EGKNEGTLVYE 823
G+ EGTL+ E
Sbjct: 231 XGEKEGTLITE 241
>pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio
Parahaemolyticus
Length = 185
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 125/185 (67%)
Query: 828 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 887
+I++IKK+ +++M +++ LK NL KVRTGRA+ +L I V+Y+ T L ++AN+
Sbjct: 1 MINEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAE 60
Query: 888 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 947
++ T++I F+KE++ ++KAI ++LGLNP G II V +PPLT+ERR+++VK+++
Sbjct: 61 DARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGE 120
Query: 948 TEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 1007
E ++++R IRRD+N S D + +AQ +IQKLTD + +I+++L KEK
Sbjct: 121 AEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEK 180
Query: 1008 EILTL 1012
E++ +
Sbjct: 181 ELMEV 185
>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf)
From Escherichia Coli
pdb|1ZN0|A Chain A, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
pdb|1ZN1|A Chain A, Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 70s Post-
Termination Complex
pdb|2RDO|8 Chain 8, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|4GAS|Y Chain Y, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 185
Score = 139 bits (350), Expect = 7e-33, Method: Composition-based stats.
Identities = 69/183 (37%), Positives = 120/183 (65%)
Query: 828 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 887
+ISDI+K+ + +M ++ K + K+RTGRA+ +LD I V+Y+ T L ++A++T+
Sbjct: 1 MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60
Query: 888 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 947
+S T+ I F++ MS ++KAI ++LGLNP G+ I V +PPLT+ERR+++ K+++
Sbjct: 61 DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120
Query: 948 TEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 1007
E+ ++++R +RRD+N+ S D++ R+Q D+QKLTD I +I L +KE
Sbjct: 121 AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180
Query: 1008 EIL 1010
E++
Sbjct: 181 ELM 183
>pdb|4GD1|Y Chain Y, Structures Of The Bacterial Ribosome In Classical And Hybrid
States Of Trna Binding
Length = 183
Score = 139 bits (349), Expect = 1e-32, Method: Composition-based stats.
Identities = 69/182 (37%), Positives = 119/182 (65%)
Query: 829 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
ISDI+K+ + +M ++ K + K+RTGRA+ +LD I V+Y+ T L ++A++T+ +
Sbjct: 2 ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61
Query: 889 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
S T+ I F++ MS ++KAI ++LGLNP G+ I V +PPLT+ERR+++ K+++
Sbjct: 62 SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEA 121
Query: 949 EETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
E+ ++++R +RRD+N+ S D++ R+Q D+QKLTD I +I L +KE E
Sbjct: 122 EQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181
Query: 1009 IL 1010
++
Sbjct: 182 LM 183
>pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor
From Escherichia Coli, Arg132gly
Length = 185
Score = 136 bits (342), Expect = 6e-32, Method: Composition-based stats.
Identities = 68/183 (37%), Positives = 119/183 (65%)
Query: 828 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 887
+ISDI+K+ + +M ++ K + K+RTGRA+ +LD I V+Y+ T L ++A++T+
Sbjct: 1 MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60
Query: 888 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 947
+S T+ I F++ MS ++KAI ++LGLNP G+ I V +PPLT+ERR+++ K+++
Sbjct: 61 DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120
Query: 948 TEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 1007
E+ ++++R + RD+N+ S D++ R+Q D+QKLTD I +I L +KE
Sbjct: 121 AEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180
Query: 1008 EIL 1010
E++
Sbjct: 181 ELM 183
>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7W|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|C Chain C, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|D Chain D, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|E Chain E, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|F Chain F, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
Length = 240
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 98/161 (60%)
Query: 653 IDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGK 712
I R++ DYMGMLAT+IN++A+ + L G+ + V SAI I++ ESYI AI++LE+G+
Sbjct: 70 IRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGR 129
Query: 713 VVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGIYNSDPNKCLSAIIYKKITFD 772
VVIF G GNPFFTTD VDGIY+ DPNK A ++++
Sbjct: 130 VVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYN 189
Query: 773 EVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 813
+ + +E+MD TA S +D KLPI V ++ K G L +VI+
Sbjct: 190 DALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIK 230
>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus
pdb|2V46|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
pdb|2V48|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
pdb|2QBE|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia
Coli In Complex With Ribosome Recycling Factor (Rrf).
This File Contains The 50s Subunit Of The First 70s
Ribosome, With Rrf Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBG|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia
Coli In Complex With Ribosome Recycling Factor (Rrf).
This File Contains The 50s Subunit Of The Second 70s
Ribosome, With Rrf Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBI|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia
Coli In Complex With Gentamicin And Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Gentamicin And Rrf Bound. The
Entire Crystal Structure Contains Two 70s Ribosomes And
Is Described In Remark 400.
pdb|2QBK|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia
Coli In Complex With Gentamicin And Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Gentamicin And Rrf Bound. The
Entire Crystal Structure Contains Two 70s Ribosomes And
Is Described In Remark 400.
pdb|2Z4L|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia
Coli In Complex With Paromomycin And Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Paromomycin And Rrf Bound. The
Entire Crystal Structure Contains Two 70s Ribosomes And
Is Described In Remark 400.
pdb|2Z4N|6 Chain 6, Crystal Structure Of The Bacterial Ribosome From Escherichia
Coli In Complex With Paromomycin And Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Paromomycin And Rrf Bound. The
Entire Crystal Structure Contains Two 70s Ribosomes And
Is Described In Remark 400.
pdb|3J0D|J Chain J, Models For The T. Thermophilus Ribosome Recycling Factor
Bound To The E. Coli Post-Termination Complex
pdb|3J0E|G Chain G, Models For The T. Thermophilus Ribosome Recycling Factor And
The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 185
Score = 132 bits (332), Expect = 9e-31, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 120/184 (65%)
Query: 827 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 886
M + ++ T+ M ++++L+ NL +RTGRAN +L +++V+Y+ L +IA +T
Sbjct: 1 MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60
Query: 887 FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 946
+ T+ +Q +++ I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++
Sbjct: 61 PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120
Query: 947 ITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKE 1006
EE +++IR IRR++ + S D RA+ +IQK+TD+FI + +QL KE
Sbjct: 121 YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180
Query: 1007 KEIL 1010
+EIL
Sbjct: 181 QEIL 184
>pdb|1YY7|A Chain A, Crystal Structure Of Stringent Starvation Protein A
(Sspa), An Rna Polymerase-Associated Transcription
Factor
pdb|1YY7|B Chain B, Crystal Structure Of Stringent Starvation Protein A
(Sspa), An Rna Polymerase-Associated Transcription
Factor
Length = 213
Score = 132 bits (331), Expect = 1e-30, Method: Composition-based stats.
Identities = 66/176 (37%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4 EIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXX 63
EI ++ N P ++ +NPY VP LV+R+L LYES II EY+DERFP+P LM P
Sbjct: 37 EIEQVEADNLPQDLIDLNPYRTVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVAR 96
Query: 64 XXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGD 123
E + + LY +E + + + AR+++R+ L+++AP+F + + + +
Sbjct: 97 GSSRLMMHRIEHDWYSLLYKIEQGNAQEA----EAARKQLREELLSIAPVFNETPFFMSE 152
Query: 124 EFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFSRPSYMESLTPAEKIMQ 178
EFS++D +APLLWRL GI + + S +K Y R+F R +++ SLT AE+ M
Sbjct: 153 EFSLVDCYLAPLLWRLPVLGIEFTGAGSKELKGYMTRVFERDAFLASLTEAEREMH 208
>pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome
Recycling Factor (Frr) From Bacillus Anthracis
Length = 209
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 110/179 (61%)
Query: 834 KNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTIS 893
K + +KM + L VR GRA+ +LD +QV Y+ T ++++ANIT+ + +
Sbjct: 31 KFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLV 90
Query: 894 IQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 953
IQP++K I+KAI +A+LGLNP+ G +I ++ P LT+ERR ++VK++K EE K+
Sbjct: 91 IQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKV 150
Query: 954 SIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL 1012
++R +RRD N+ + D+ DIQK TDK+I +++++ NKEKEI+ +
Sbjct: 151 AVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 209
>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|B Chain B, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|C Chain C, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
Length = 255
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDIL-NKSGIISHVMSAIS 691
++IVIGGGNI RG + IDR AD +G L TIINSL L +L +K+ VM++I
Sbjct: 54 VSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIP 113
Query: 692 IEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDX-XXXXXXXXXXXXXXXXXXXVD 750
E YI L A+ +L+ G +VIF GG G PF TTD VD
Sbjct: 114 FNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVD 173
Query: 751 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR 810
G++ SDP SA +Y+K+ +++V+ + +++MD A RD LP VF+ + G ++R
Sbjct: 174 GVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRR 233
Query: 811 VIEGKNEGTLV 821
+ G++ GTL+
Sbjct: 234 ICLGEHVGTLI 244
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
++IV+GGGNI RG K ++DR+ AD MGM+ATIIN LAL + LN + + V+SAI
Sbjct: 65 VSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC 124
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXX-XXXVDG 751
+K + N K +E+ +V+IF G G P+FTTD VDG
Sbjct: 125 DKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDG 184
Query: 752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRV 811
+Y+SDP +A Y+ ITF+ +++ L++MD+TA + C++ + + VF+I K A+ V
Sbjct: 185 VYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDV 244
Query: 812 IEGKNEGTLV 821
+E KN+ T+V
Sbjct: 245 LEKKNKYTIV 254
>pdb|3LYK|A Chain A, Structure Of Stringent Starvation Protein A Homolog From
Haemophilus Influenzae
pdb|3LYK|B Chain B, Structure Of Stringent Starvation Protein A Homolog From
Haemophilus Influenzae
Length = 216
Score = 127 bits (319), Expect = 3e-29, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 9/174 (5%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
+E ++DL P+++ +NPYG VP LV+RDL+L+ S II EY+DERFP+P L P
Sbjct: 32 YENAEVDLQALPEDLXELNPYGTVPTLVDRDLVLFNSRIIXEYLDERFPHPPLXQVYPVS 91
Query: 63 XXXXXXXXXNFEKEIFIHLYMLEN--ERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYM 120
E++ + L EN E+ KTS A +++++ L+ +AP+F + Y
Sbjct: 92 RAKDRLLXLRIEQDWYPTLAKAENGTEKEKTS------ALKQLKEELLGIAPIFQQXPYF 145
Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFSRPSYMESLTPA 173
+EF ++D +APLLW+L + G+ + + S IK Y ER+F+R S+++S+ A
Sbjct: 146 XNEEFGLVDCYVAPLLWKLKHLGVEFTGTGSKAIKAYXERVFTRDSFLQSVGEA 199
>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|B Chain B, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|C Chain C, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
Length = 252
Score = 127 bits (318), Expect = 4e-29, Method: Composition-based stats.
Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
+A+VIGGGN+ RG DR ADY G L T+ N+L D L G+ + V +AI
Sbjct: 49 IALVIGGGNLWRGEPAADAGXDRVQADYTGXLGTVXNALVXADSLQHYGVDTRVQTAIPX 108
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXX-VDG 751
+ E YI A+++LE+ ++V+F GIG+P+F+TD VDG
Sbjct: 109 QNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILXAKNGVDG 168
Query: 752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRV 811
+YN+DP K +A+ + ++T EVI + L+I D+TA + D + + VF+ ++G ++RV
Sbjct: 169 VYNADPKKDANAVKFDELTHGEVIKRGLKIXDATASTLSXDNDIDLVVFNXNEAGNIQRV 228
Query: 812 IEGKNEGTLV 821
+ G++ GT V
Sbjct: 229 VFGEHIGTTV 238
>pdb|3LYP|A Chain A, Structure Of Stringent Starvation Protein A Homolog From
Pseudomonas Fluorescens
pdb|3LYP|B Chain B, Structure Of Stringent Starvation Protein A Homolog From
Pseudomonas Fluorescens
Length = 215
Score = 125 bits (315), Expect = 8e-29, Method: Composition-based stats.
Identities = 59/177 (33%), Positives = 102/177 (57%), Gaps = 2/177 (1%)
Query: 4 EIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXX 63
EI ++ +P + +NPYG +P LV+RDL L+ES ++ EY+DER+P+P L+ P
Sbjct: 35 EIISVEAGRQPPKLIEVNPYGSLPTLVDRDLALWESTVVXEYLDERYPHPPLLPVYPVAR 94
Query: 64 XXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGD 123
+++ + ++ + R K + + +AR+E+R+ L ++PLF + L +
Sbjct: 95 ANSRLLIHRIQRDWCGQVDLILDPRTKEAAR--VQARKELRESLTGVSPLFADKPFFLSE 152
Query: 124 EFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAG 180
E S++D + P+LWRL GI L + A PL+ Y ER F+R ++ SL+ E+ + G
Sbjct: 153 EQSLVDCCLLPILWRLPVLGIELPRQAKPLLDYXERQFAREAFQASLSGVERDXREG 209
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 120/224 (53%), Gaps = 27/224 (12%)
Query: 387 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 442
A + A V ELR +T A +M+CKKAL EANG + A E +R IK KK N+ A
Sbjct: 2 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 57
Query: 443 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKK-----IAKLITENTPXXXXXXX 497
DGVI I G ++E+NC+TDFVAK+ F F+ K +A IT+
Sbjct: 58 ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITD---------- 107
Query: 498 XXXXXXXXXTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNE 557
+E+ L+++IGENI IRR + + L SY H +IGV+V G +E
Sbjct: 108 ---VEVLKAQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADE 163
Query: 558 SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 601
VK +AMH+AA KP + + + +++EKEY + + A Q G+
Sbjct: 164 ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGK 207
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 27/223 (12%)
Query: 387 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 442
A + A V ELR +T A +M+CKKAL EANG + A E +R IK KK N+ A
Sbjct: 2 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 57
Query: 443 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKK-----IAKLITENTPXXXXXXX 497
DGVI I G ++E+NC+TDFVAK+ F F+ K +A IT+
Sbjct: 58 ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITD---------- 107
Query: 498 XXXXXXXXXTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNE 557
+E+ L+++IGENI IRR + + L SY H +IGV+V G +E
Sbjct: 108 ---VEVLKAQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADE 163
Query: 558 SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 600
VK +AMH+AA KP + + + +++EKEY + + A Q G
Sbjct: 164 ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSG 206
>pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|D Chain D, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 282
Score = 119 bits (298), Expect = 8e-27, Method: Composition-based stats.
Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 17/219 (7%)
Query: 387 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 442
A + A V ELR +T A +M+CKKAL EANG + A E +R IK KK N+ A
Sbjct: 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 56
Query: 443 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPXXXXXXXXXXXX 502
DGVI I G ++E+NC+TDFVAK+ F F+ K+
Sbjct: 57 ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAG--------KITDVE 108
Query: 503 XXXXTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKD 562
+E+ L+++IGENI IRR + + L SY H +IGV+V G +E VK
Sbjct: 109 VLKAQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADEELVKH 167
Query: 563 VAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 601
+AMH+AA KP + + + +++EKEY + + A Q G+
Sbjct: 168 IAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGK 206
>pdb|4DEJ|A Chain A, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|B Chain B, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|C Chain C, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|D Chain D, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|E Chain E, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|F Chain F, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|G Chain G, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|H Chain H, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|I Chain I, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|J Chain J, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|K Chain K, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|L Chain L, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
Length = 231
Score = 119 bits (298), Expect = 9e-27, Method: Composition-based stats.
Identities = 62/164 (37%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 14 PDNIFRMNPYGQV-PILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXXXN 72
P+++ ++NPY + P LV+R+L+LY + II EY+DERFP+P LM P
Sbjct: 49 PEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYR 108
Query: 73 FEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVI 132
E++ Y L + K +AR+E+++ +++LAP+F Y + +EFS++D +
Sbjct: 109 IERD----WYSLAEKIQKND----AQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYL 160
Query: 133 APLLWRLDYYGINLSKSASPLIK-YAERIFSRPSYMESLTPAEK 175
APLLWRL YGI+L + IK Y R+F R ++ +SLT EK
Sbjct: 161 APLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEK 204
>pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
pdb|1WQG|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
pdb|1WQH|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
Length = 185
Score = 118 bits (295), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/176 (34%), Positives = 105/176 (59%)
Query: 835 NTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISI 894
+ ++KM + + +++L +RTGRAN GM I + Y+ T + ++A+I + + + I
Sbjct: 8 DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67
Query: 895 QPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKIS 954
+P+E I+ AI ++LG+NPT G +I V++P LT+ERR E+VK K+ EE K+S
Sbjct: 68 KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVS 127
Query: 955 IRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 1010
+R IRR + E D RA+ D+ K T +++ +I++L+ +KE E+L
Sbjct: 128 VRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELL 183
>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Recycling
Factor, Rrf
pdb|1T1M|C Chain C, Binding Position Of Ribosome Recycling Factor (Rrf) On The
E. Coli 70s Ribosome
Length = 185
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 113/177 (63%)
Query: 834 KNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTIS 893
K K+KM T++ +++ L+K+RTG+ + +L+ I+V Y+ T + ++A I++ T+
Sbjct: 7 KEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLV 66
Query: 894 IQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 953
I+P++K + S+I+KAIN ++LGLNP GN+I + P T E+RE+ VK K I EE KI
Sbjct: 67 IKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKI 126
Query: 954 SIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 1010
+IR IRR+ + D+ R + +IQKLTD+FI +++++ K++EI+
Sbjct: 127 AIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIM 183
>pdb|3MDK|A Chain A, Structure Of Stringent Starvation Protein A (Sspa) From
Pseudomonas Putida
pdb|3MDK|B Chain B, Structure Of Stringent Starvation Protein A (Sspa) From
Pseudomonas Putida
Length = 217
Score = 114 bits (285), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 4 EIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXX 63
++ D+D + P + +NPYG VP LV+RDL LYES ++ EY++ER+P+P L P
Sbjct: 35 QLIDVDPAHLPRKLAEVNPYGSVPTLVDRDLALYESTVVXEYLEERYPHPPLXPVYPVAR 94
Query: 64 XXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGD 123
+++ + + R+ + + AR+ +R+ L ++PLF + D
Sbjct: 95 GNSRLLXHRIQRDWCALADTVLDPRSSEAAR--TEARKALRESLTGVSPLFSEFACFXSD 152
Query: 124 EFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEK 175
E S++D + P+LWRL GI L + A PL+ Y ER F+R + SL+ E+
Sbjct: 153 EQSLVDCCLLPILWRLPVLGIELPRQAKPLLDYXERQFAREPFQASLSSVER 204
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 115/184 (62%), Gaps = 4/184 (2%)
Query: 829 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
+ DI K ++ M ++ K + +RT RA+ +++ I+V+Y+ + ++ I++
Sbjct: 5 LEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPE 64
Query: 889 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
+ I IQ +++ I+KAI E L LNPT+QGN+I V++PPLT+ERR E+V+L+ IT
Sbjct: 65 HNQIVIQVWDQNAVPAIEKAIRE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKIT 123
Query: 949 EETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
EE ++ +R +RR++ E S D + RA +QKLTDK+I EIN+L+ KEKE
Sbjct: 124 EEARVRVRNVRREAKE---MIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEKE 180
Query: 1009 ILTL 1012
I+++
Sbjct: 181 IMSV 184
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 394 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYI-- 451
+ +LR T A +M+ K+AL +A KA ++LR + K ++R A++G+I YI
Sbjct: 7 IKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHH 66
Query: 452 SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP 490
+++VG LVE+NCETDFVA+N F +K +A I P
Sbjct: 67 NQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNP 105
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 15/80 (18%)
Query: 542 HDNKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKE---Y 589
H+ ++GV+VE N + ++ KD+AMHIA M P +S+++IP + +EKE Y
Sbjct: 66 HNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIY 125
Query: 590 SLAVL---KAQQLGEALMKG 606
A L K QQ+ E + +G
Sbjct: 126 IQAALNEGKPQQIAEKIAEG 145
>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens
Length = 241
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 7/179 (3%)
Query: 4 EIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
E+ +I+L NKP+ F+ NP+G VP+L + ++YES I EY+DE +P +L+ DP
Sbjct: 50 EVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYE 109
Query: 63 XXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYM 120
F K + + ++ NK G K EE R L + K +
Sbjct: 110 KACQKMILELFSKVPSLVGSFIRSQ-NKEDYAGLK---EEFRKEFTKLEEVLTNKKTTFF 165
Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQA 179
G+ SM+D +I P RL+ +N +P +K + +L +EK Q
Sbjct: 166 GGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQG 224
>pdb|3VLN|A Chain A, Human Glutathione Transferase O1-1 C32s Mutant In Complex
With Ascorbic Acid
Length = 241
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 7/179 (3%)
Query: 4 EIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
E+ +I+L NKP+ F+ NP+G VP+L + ++YES I EY+DE +P +L+ DP
Sbjct: 50 EVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYE 109
Query: 63 XXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYM 120
F K + + ++ NK G K EE R L + K +
Sbjct: 110 KACQKMILELFSKVPSLVGSFIRSQ-NKEDYAGLK---EEFRKEFTKLEEVLTNKKTTFF 165
Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQA 179
G+ SM+D +I P RL+ +N +P +K + +L +EK Q
Sbjct: 166 GGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQG 224
>pdb|3LFL|A Chain A, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|B Chain B, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|C Chain C, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
Length = 240
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 6/178 (3%)
Query: 4 EIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
E+ +I+L NKP+ F+ NP+G VP+L + ++YES I EY+DE +P +L+ DP
Sbjct: 50 EVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYE 109
Query: 63 XXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF-LKNKYML 121
F K + + ++ NK G K EE R L L K +
Sbjct: 110 KACQKMILELFSKVPSLVGSFIRSQ-NKEDYAGLK---EEFRKEFTKLEVLTNKKTTFFG 165
Query: 122 GDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQA 179
G+ SM+D +I P RL+ +N +P +K + +L +EK Q
Sbjct: 166 GNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQG 223
>pdb|3QAG|A Chain A, Human Glutathione Transferase O2 With Glutathione -New
Crystal Form
pdb|3Q18|A Chain A, Human Glutathione Transferase O2
pdb|3Q18|B Chain B, Human Glutathione Transferase O2
pdb|3Q19|A Chain A, Human Glutathione Transferase O2
pdb|3Q19|B Chain B, Human Glutathione Transferase O2
Length = 239
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Query: 4 EIRDIDLFNKPDNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
E+ +I+L NKP+ + +P+G +P+L + ++YES I EY+D+ +P +L DP
Sbjct: 50 EVVNINLRNKPEWYYTKHPFGHIPVLETSQSQLIYESVIACEYLDDAYPGRKLFPYDPYE 109
Query: 63 XXXXXXXXXNFEKEIFIH---LYMLENERNKTSIKGYKRAR----EEIRDRLITLAPLFL 115
F K + L L + R T++K R EEI + +
Sbjct: 110 RARQKMLLELFSKVPHLTKECLVALRSGRESTNLKAALRQEFSNLEEILE--------YQ 161
Query: 116 KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK 155
+ G SM+D ++ P RLD YGI S +P ++
Sbjct: 162 NTTFFGGTSISMIDYLLWPWFERLDVYGILDCVSHTPALR 201
>pdb|1Y69|8 Chain 8, Rrf Domain I In Complex With The 50s Ribosomal Subunit From
Deinococcus Radiodurans
Length = 113
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 933 TKERREEIVKLIKNITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTD 992
T+ERR+++ K+++ E+ ++++R +RRD+N+ S D++ R+Q D+QKLTD
Sbjct: 34 TEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTD 93
Query: 993 KFILEINQLLINKEKEIL 1010
I +I L +KE E++
Sbjct: 94 AAIKKIEAALADKEAELM 111
>pdb|1XB2|B Chain B, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 291
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 396 ELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGK----KILNISNRNAKDGVIAIYI 451
+LR KT + CKKAL G L +AE L + K K + R K+G+I +
Sbjct: 10 KLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQ 69
Query: 452 SEKVGSLVEINCETDFVAKNNEFIKFSKKIA 482
LVE+NCETDFV++N +F + +++A
Sbjct: 70 EGDTTVLVEVNCETDFVSRNLKFQQLVQQVA 100
>pdb|3QAV|A Chain A, Crystal Structure Of A Glutathione S-transferase From
Antarctic Clam Laternula Elliptica
pdb|3QAW|A Chain A, Crystal Structure Of A Glutathione-s-transferase From
Antarctic Clam Laternula Elliptica In A Complex With
Glutathione
Length = 243
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 12 NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXXX 71
+K + I +NP GQVP + D+++ ES I Y++E++P L SD
Sbjct: 64 HKSEEILELNPRGQVPTFTDGDVVVNESTAICMYLEEKYPKVPLFPSDTTIRAK------ 117
Query: 72 NFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK------------- 118
++ M E T++ + + + + +D ++ + LK K
Sbjct: 118 -------VYQRMFETSNISTNVMEFVQYKMKNKD---SIDQVLLKEKKDKAHVELGHWEN 167
Query: 119 -------YMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
++ EF+M DV P++ + G NL S + KY + RP+ ++++
Sbjct: 168 YLKQTGGFVATKEFTMADVFFFPMVALIVRQGANLKDSYPNIFKYYNMMMDRPTIVKTMP 227
Query: 172 P 172
P
Sbjct: 228 P 228
>pdb|1VI6|A Chain A, Crystal Structure Of Ribosomal Protein S2p
pdb|1VI6|B Chain B, Crystal Structure Of Ribosomal Protein S2p
pdb|1VI6|C Chain C, Crystal Structure Of Ribosomal Protein S2p
pdb|1VI6|D Chain D, Crystal Structure Of Ribosomal Protein S2p
Length = 208
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 57/250 (22%)
Query: 168 ESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQ 226
E L P + + AGVH G Q + + M +IF R + ++++++ K A +++ +
Sbjct: 8 EYLVPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR 65
Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
SK +L V ++ A + + G +I R++ G LTN
Sbjct: 66 YEPSK--ILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTN---------------- 107
Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
L YR+ P+ +F+ D K AVSEA +
Sbjct: 108 -------------PMLSEYRE-----------------PEVVFVNDPAIDKQAVSEATAV 137
Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM 406
IP++ + D+N+S ++ VIP N+ +++A+ +L A+ + ++R + +
Sbjct: 138 GIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVY------WLLAREIAKIRGQDFTYSI 191
Query: 407 ECKKALIEAN 416
E +A +E
Sbjct: 192 EDFEAELEGG 201
>pdb|1AW9|A Chain A, Structure Of Glutathione S-Transferase Iii In Apo Form
Length = 216
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 30/191 (15%)
Query: 1 MDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS 57
+DFEI +DL +K + +NP+GQ+P LV+ D +L+ES IN YI ++ +
Sbjct: 26 LDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYIASKY------A 79
Query: 58 SDPXXXXXXXXXXXNFEKEIFI---HLY--------------MLENERNKTSIKGYKRAR 100
S+ E + + H Y +L + + +
Sbjct: 80 SEGTDLLPATASAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHA--- 136
Query: 101 EEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAER 159
E++ L +NKY+ GDEF++ D A L L +A P +K + E
Sbjct: 137 EQLAKVLDVYEAHLARNKYLAGDEFTLADANHASYLLYLSKTPKAGLVAARPHVKAWWEA 196
Query: 160 IFSRPSYMESL 170
I +RP++ +++
Sbjct: 197 IVARPAFQKTV 207
>pdb|1VI5|A Chain A, Crystal Structure Of Ribosomal Protein S2p
pdb|1VI5|B Chain B, Crystal Structure Of Ribosomal Protein S2p
pdb|1VI5|C Chain C, Crystal Structure Of Ribosomal Protein S2p
pdb|1VI5|D Chain D, Crystal Structure Of Ribosomal Protein S2p
Length = 208
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 57/249 (22%)
Query: 168 ESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQ 226
E L P + + AGVH G Q + + K +IF R + ++++++ K A +++ +
Sbjct: 8 EYLVPPDDYLAAGVHIGTQIKTGDXK--KFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR 65
Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
SK +L V ++ A + + G +I R++ G LTN
Sbjct: 66 YEPSK--ILLVAARQYAHKPVQXFSKVVGSDYIVGRFIPGTLTN---------------- 107
Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
L YR+ P+ +F+ D K AVSEA +
Sbjct: 108 -------------PXLSEYRE-----------------PEVVFVNDPAIDKQAVSEATAV 137
Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM 406
IP++ + D+N+S ++ VIP N+ +++A+ +L A+ + ++R + +
Sbjct: 138 GIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVY------WLLAREIAKIRGQDFTYSI 191
Query: 407 ECKKALIEA 415
E +A +E
Sbjct: 192 EDFEAELEG 200
>pdb|4IQ1|A Chain A, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica,
Substrate-free
pdb|4IQ1|B Chain B, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica,
Substrate-free
pdb|4IQ1|C Chain C, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica,
Substrate-free
pdb|4IW9|A Chain A, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica, Gsh
Complex
pdb|4IW9|B Chain B, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica, Gsh
Complex
pdb|4IW9|C Chain C, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica, Gsh
Complex
Length = 231
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 11 FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXX 70
F K +NP G VP+LV+ DL L ++ I Y+DE +P +L S
Sbjct: 60 FIKSAEYLALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTARDKAKAARW 119
Query: 71 XNF----EKEIFIHLYMLEN--ERNKTSIKGYK-RAREEIRDRLITLAPLFLKNKYMLGD 123
F + F+ L+ L + E N+T K + ++ E+I ++L A L+N G+
Sbjct: 120 LAFFNSDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQL-AFANAHLENHIFFGE 178
Query: 124 EFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERI 160
E S+ D + +L G++ S S L + +R+
Sbjct: 179 EISVADAYLYIMLNWCRLLGLDFSH-LSQLSAFMQRV 214
>pdb|3UAP|A Chain A, Crystal Structure Of Glutathione Transferase (Target
Efi-501774) From Methylococcus Capsulatus Str. Bath
pdb|3UAR|A Chain A, Crystal Structure Of Glutathione Transferase (Target
Efi-501774) From Methylococcus Capsulatus Str. Bath With
Gsh Bound
Length = 227
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 41/201 (20%)
Query: 1 MDFEIRDIDLFNKPD----NIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQL 55
+DFE+ ++DL K + ++NP G VP L ++ +L E +I +Y+ + P L
Sbjct: 25 LDFELENVDLGTKKTGSGADFLQVNPKGYVPALQLDDGQVLTEDQVILQYLADLKPESGL 84
Query: 56 MSSDPXXXXXXXXXXXNFEKEIFIH-LYMLENERNKT----------------SIKGYKR 98
M FE+ + L + E +KT ++ R
Sbjct: 85 MPPS-----------GTFERYRLLEWLAFISTEIHKTFGPFWNPESPEASKQIALGLLSR 133
Query: 99 AREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAE 158
+ + DRL P +++GD +S+ D ++ +L +Y I+LSK ++ Y E
Sbjct: 134 RLDYVEDRLEAGGP------WLMGDRYSVADAYLSTVLGWCEYLKIDLSKWPR-ILAYLE 186
Query: 159 RIFSRPSYMESLTPAEKIMQA 179
R +RP+ +++ AE ++QA
Sbjct: 187 RNQARPA-VQAAMKAEGLIQA 206
>pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus
Length = 145
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 442 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP 490
A++G+I YI +++VG LVE+NCETDFVA+N F +K +A I P
Sbjct: 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNP 51
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 15/80 (18%)
Query: 542 HDNKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKE---Y 589
H+ ++GV+VE N + ++ KD+AMHIA M P +S+++IP + +EKE Y
Sbjct: 12 HNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIY 71
Query: 590 SLAVL---KAQQLGEALMKG 606
A L K QQ+ E + +G
Sbjct: 72 IQAALNEGKPQQIAEKIAEG 91
>pdb|3LF9|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold
4e10_d0_1is1a_001_c
Length = 121
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 933 TKERREEIVKLIKNITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTD 992
T+ERR+++VK+++ E ++++R I RD+ + + +A ++IQKLTD
Sbjct: 34 TEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTD 93
Query: 993 KFILEINQLLINKEKEIL 1010
+ +I+++L KEKE++
Sbjct: 94 VAVKKIDEVLAAKEKELM 111
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 828 IISDIKKNTKQKMLNTIKILKENLKKVRTG 857
+I++IKK+ +++M +++ LK NL KVRTG
Sbjct: 1 MINEIKKDAQERMDKSVEALKNNLSKVRTG 30
>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Ricinus Communis, Target Efi-501866
Length = 223
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 3 FEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPX 61
+E + DLFNK + + NP + ++P+LV + ES II EY+DE +P L+ SDP
Sbjct: 30 YEYVEEDLFNKSPLLLQYNPVHKKIPVLVHGGKPICESTIILEYLDETWPENPLLPSDPH 89
Query: 62 XXXXXXXXXXNFEKE--IFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKY 119
E + +++ + E + ++K + I + + ++ +KY
Sbjct: 90 ERAVARFWVKFIEDKGTAIWNIFRTKGEELEKAVKNCLEVLKTIEEHAMGVS----DDKY 145
Query: 120 MLGDEFSMLDV 130
GD+ ++D+
Sbjct: 146 FGGDKIGIVDI 156
>pdb|2VO4|A Chain A, Glutathione Transferase From Glycine Max
pdb|2VO4|B Chain B, Glutathione Transferase From Glycine Max
pdb|3FHS|A Chain A, Glutathione Transferase From Glycine Max At 2.7 Resolution
pdb|3FHS|B Chain B, Glutathione Transferase From Glycine Max At 2.7 Resolution
Length = 219
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 20/187 (10%)
Query: 3 FEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDE----RFPYPQLMS 57
+E ++ DL NK + +MNP + ++P+L+ + ES I +YI+E R P L+
Sbjct: 30 YEYKEEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIEEVWNDRNP---LLP 86
Query: 58 SDPXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKR--AREEIRDRLITLAPLFL 115
SDP +K+I+ + R + KG ++ A++E + L L
Sbjct: 87 SDPYQRAQTRFWADYVDKKIY------DLGRKIWTSKGEEKEAAKKEFIEALKLLEEQLG 140
Query: 116 KNKYMLGDEFSMLDVVIAPLL-WRLDY--YG-INLSKSASPLIKYAERIFSRPSYMESLT 171
Y GD +D+ + P W Y +G +N+ I +A+R + S +SL
Sbjct: 141 DKTYFGGDNLGFVDIALVPFYTWFKAYETFGTLNIESECPKFIAWAKRCLQKESVAKSLP 200
Query: 172 PAEKIMQ 178
+K+ +
Sbjct: 201 DQQKVYE 207
>pdb|4G9H|A Chain A, Crystal Structure Of Glutahtione S-Transferase Homolog
From Yersinia Pestis, Target Efi-501894, With Bound
Glutathione
pdb|4G9H|B Chain B, Crystal Structure Of Glutahtione S-Transferase Homolog
From Yersinia Pestis, Target Efi-501894, With Bound
Glutathione
pdb|4GCI|A Chain A, Crystal Structure Of Glutahtione S-Transferase Homolog
From Yersinia Pestis, Target Efi-501894, With Bound
Glutathione, Monoclinic Form
pdb|4GCI|B Chain B, Crystal Structure Of Glutahtione S-Transferase Homolog
From Yersinia Pestis, Target Efi-501894, With Bound
Glutathione, Monoclinic Form
Length = 211
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 10/189 (5%)
Query: 1 MDFEIRDIDLFNKPD----NIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQL 55
+DF I +DL K + +NP GQVP LV D +L E I +Y+ ++ P L
Sbjct: 26 LDFSIERVDLVTKKTETGADYLSINPKGQVPALVLDDGSLLTEGVAIVQYLADKVPDRHL 85
Query: 56 MSSDPXXXXXXXXXXXNF-EKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
++ NF E+ L N K RE + + + +
Sbjct: 86 IAPSGTLSRYHAIEWLNFIATELHKGFSPLFNPNTPDEYKTI--VRERLDKQFSYVDSVL 143
Query: 115 LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAE 174
++ Y+LG +FS+ D + + + + + K S L +Y R+ RP+ +L AE
Sbjct: 144 AEHDYLLGKKFSVADAYLFTVSRWANALNLQI-KERSHLDQYMARVAERPAVKAALA-AE 201
Query: 175 KIMQAGVHF 183
I ++F
Sbjct: 202 DIKAENLYF 210
>pdb|3TOT|A Chain A, Crystal Structure Of Glutathione Transferase (Target
Efi-501058) From Ralstonia Solanacearum Gmi1000
pdb|3TOT|B Chain B, Crystal Structure Of Glutathione Transferase (Target
Efi-501058) From Ralstonia Solanacearum Gmi1000
pdb|3TOU|A Chain A, Crystal Structure Of Glutathione Transferase (Target
Efi-501058) From Ralstonia Solanacearum Gmi1000 With Gsh
Bound
pdb|3TOU|B Chain B, Crystal Structure Of Glutathione Transferase (Target
Efi-501058) From Ralstonia Solanacearum Gmi1000 With Gsh
Bound
Length = 226
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 7/183 (3%)
Query: 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQLM--S 57
+D++ D++N I + NP G+VP LV D L++S +I EY D P +L+ S
Sbjct: 26 IDYQFVLEDVWNADTQIHQFNPLGKVPCLVMDDGGALFDSRVIAEYADTLSPVARLIPPS 85
Query: 58 SDPXXXXXXXXXXXNFEKEIFIHLYMLENERN--KTSIKGYKRAREEIRDRLITLAPLFL 115
+ + + L + + +R + S R +I + L ++
Sbjct: 86 GRERVEVRCWEALADGLLDAAVALRVEQTQRTPEQRSESWITRQHHKIDEALKAMSRGLA 145
Query: 116 KNKYMLGDEFSMLDVVIAPLLWRLDYY--GINLSKSASPLIKYAERIFSRPSYMESLTPA 173
+ G+ ++ D+ + L LD+ ++ + + L + RI RPS++E+ A
Sbjct: 146 DRTWCNGNHLTLADIAVGCALAYLDFRQPQVDWREQHANLAAFYTRIEKRPSFLETQPQA 205
Query: 174 EKI 176
E +
Sbjct: 206 ENL 208
>pdb|1OYJ|A Chain A, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|B Chain B, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|C Chain C, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|D Chain D, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione
Length = 231
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 1 MDFEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERFP-YPQLM 56
++FE R+ DL NK D + R NP + ++P+L+ + ES +I +Y+D+ FP P L+
Sbjct: 30 LEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLL 87
>pdb|2YCD|A Chain A, Structure Of A Novel Glutathione Transferase From
Agrobacterium Tumefaciens
Length = 230
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 22 PYGQVPILVERDLILYESNIINEYIDER----FPYPQLMSSDPXXXXXXXXXXXNFEKEI 77
P+GQ+P + DLIL+ES I +I + P QL + E I
Sbjct: 69 PFGQIPSYEQGDLILFESGAIVMHIAQHHSGLLPEDQLRRA--RTVAWMFAALNTIEPSI 126
Query: 78 FIHLYMLENERNKTSIKG-YKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 136
+ ERN+ + R +E++ RL L+ +L ++ L FS D+++ +L
Sbjct: 127 LNFTTVWLFERNEPWHEARLARTKEQLLKRLDELSA-WLGDREWLEGSFSAADILMICVL 185
Query: 137 WRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
RL+ GI K L+ Y ER +RP++ +
Sbjct: 186 RRLESSGI--LKDYGNLLAYVERGKARPAFKRAF 217
>pdb|3LQ7|A Chain A, Crystal Structure Of Glutathione S-Transferase From
Agrobacterium Tumefaciens Str. C58
pdb|3LQ7|B Chain B, Crystal Structure Of Glutathione S-Transferase From
Agrobacterium Tumefaciens Str. C58
pdb|3LQ7|C Chain C, Crystal Structure Of Glutathione S-Transferase From
Agrobacterium Tumefaciens Str. C58
Length = 240
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 22 PYGQVPILVERDLILYESNIINEYIDER----FPYPQLMSSDPXXXXXXXXXXXNFEKEI 77
P+GQ+P + DLIL+ES I +I + P QL + E I
Sbjct: 71 PFGQIPSYEQGDLILFESGAIVMHIAQHHSGLLPEDQLRRA--RTVAWMFAALNTIEPSI 128
Query: 78 FIHLYMLENERNKTSIKG-YKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 136
+ ERN+ + R +E++ RL L+ +L ++ L FS D+++ +L
Sbjct: 129 LNFTTVWLFERNEPWHEARLARTKEQLLKRLDELSA-WLGDREWLEGSFSAADILMICVL 187
Query: 137 WRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
RL+ GI K L+ Y ER +RP++ +
Sbjct: 188 RRLESSGI--LKDYGNLLAYVERGKARPAFKRAF 219
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 31/203 (15%)
Query: 633 LAIVIGGGNICRG---ISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSA 689
+A+V+GGG + R ++ K N + D++G+ T N++ L L +
Sbjct: 40 VAVVVGGGKLARKYIEVAEKF-NSSETFKDFIGIQITRANAMLLIAALREKAY------P 92
Query: 690 ISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXV 749
+ +E F E++ K ++ K+ + G +P TTD V
Sbjct: 93 VVVEDFWEAW------KAVQLKKIPVMGGT--HPGHTTDAVAALLAEFLKADLLVVITNV 144
Query: 750 DGIYNSDPNKCLSAIIYKKITFD---EVISKKLE------IMDSTAFSFCRDQKLPIRVF 800
DG+Y +DP K +A KK+ + E++ K +E ++D A + I+
Sbjct: 145 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKII--ARTGIKTI 202
Query: 801 SIIKSGA--LKRVIEGKNEGTLV 821
I K A L RVI+G + GT +
Sbjct: 203 VIGKEDAKDLFRVIKGDHNGTTI 225
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 27/201 (13%)
Query: 633 LAIVIGGGNICRG---ISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSA 689
+A+V+GGG + R ++ K N + D++G+ T N++ L L +
Sbjct: 57 VAVVVGGGKLARKYIEVAEKF-NSSETFKDFIGIQITRANAMLLIAALREKAY------P 109
Query: 690 ISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXV 749
+ +E F E++ K ++ K+ + G +P TTD V
Sbjct: 110 VVVEDFWEAW------KAVQLKKIPVMGGT--HPGHTTDAVAALLAEFLKADLLVVITNV 161
Query: 750 DGIYNSDPNKCLSAIIYKKITFD---EVISKKLE------IMDSTAFSFCRDQKLPIRVF 800
DG+Y +DP K +A KK+ + E++ K +E ++D A + V
Sbjct: 162 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 221
Query: 801 SIIKSGALKRVIEGKNEGTLV 821
+ L RVI+G + GT +
Sbjct: 222 GKEDAKDLFRVIKGDHNGTTI 242
>pdb|3J20|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 202
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 45/213 (21%), Positives = 85/213 (39%), Gaps = 51/213 (23%)
Query: 168 ESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQ 226
E L P ++ + AGVH G Q + M +I+ R + ++++++ KT + A +++ +
Sbjct: 4 EYLVPLDQYLAAGVHIGTQQK--TKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAK 61
Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
F ++L V + + + G I R+L G +TN
Sbjct: 62 --FEPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTN---------------- 103
Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
+KN PD + + D A+ EA+++
Sbjct: 104 -----------------------------PAVKNF-FEPDVLIVTDPRADHQAMREAVEI 133
Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
IPI+ +VDT + ++ IP N+ K++AL
Sbjct: 134 GIPIVALVDTENLLSYVDLAIPTNNKGRKALAL 166
>pdb|4ISD|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Burkholderia Gl Bgr1, Target Efi-501803, With Bound
Glutathione
pdb|4ISD|B Chain B, Crystal Structure Of Glutathione Transferase Homolog From
Burkholderia Gl Bgr1, Target Efi-501803, With Bound
Glutathione
pdb|4ISD|C Chain C, Crystal Structure Of Glutathione Transferase Homolog From
Burkholderia Gl Bgr1, Target Efi-501803, With Bound
Glutathione
pdb|4ISD|D Chain D, Crystal Structure Of Glutathione Transferase Homolog From
Burkholderia Gl Bgr1, Target Efi-501803, With Bound
Glutathione
pdb|4ISD|E Chain E, Crystal Structure Of Glutathione Transferase Homolog From
Burkholderia Gl Bgr1, Target Efi-501803, With Bound
Glutathione
Length = 220
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 1 MDFEIRDIDLFNKPD--NIFR-MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS 57
+DFEIR +DL +K + +R ++ +VP L L ES+ I EY+DE +P P +
Sbjct: 33 LDFEIRTVDLKSKQQHGSAYREVSLTRRVPTLQHDRFTLSESSAIAEYLDEVYPAPHYAA 92
Query: 58 SDPXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSI------KGYKRAREEIRDRLITLA 111
P + I L++ER I K A + ++L++ A
Sbjct: 93 VLP-ADRETRALARQLQAWIRSDFMPLKSERQADRIYFPEPVKPLGEAAQLACEKLLSAA 151
Query: 112 PLFLKN-KYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYME 168
+ + +Y + ++ + D A +L RL G +++Y ER ++RPS +
Sbjct: 152 DRLIDDERYGVFGDWCIADTDFALMLNRLVACG---DPVPPKVLRYVERQWARPSVQQ 206
>pdb|2GDR|A Chain A, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|B Chain B, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|C Chain C, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|D Chain D, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|E Chain E, Crystal Structure Of A Bacterial Glutathione Transferase
pdb|2GDR|F Chain F, Crystal Structure Of A Bacterial Glutathione Transferase
Length = 202
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 9/176 (5%)
Query: 1 MDFEIRDIDLFNKP----DNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQL 55
++FE+ +DL +K + +NP G VP L ++ L E I +Y+ ++ P QL
Sbjct: 23 LNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQL 82
Query: 56 MSSDPXXXXXXXXXXXNF-EKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
++ NF E+ L N + K R+ + RL +A
Sbjct: 83 APANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWK--NAVRQSLNTRLGQVARQL 140
Query: 115 LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
Y+LGD+ S+ D+ + +L Y I+LS S L + R+ R + +L
Sbjct: 141 EHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPS-LQAFQGRVGGREAVQSAL 195
>pdb|2DSA|A Chain A, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|B Chain B, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|C Chain C, Ternary Complex Of Bphk, A Bacterial Gst
pdb|2DSA|D Chain D, Ternary Complex Of Bphk, A Bacterial Gst
Length = 203
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 9/176 (5%)
Query: 1 MDFEIRDIDLFNKP----DNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQL 55
++FE+ +DL +K + +NP G VP L ++ L E I +Y+ ++ P QL
Sbjct: 23 LNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQL 82
Query: 56 MSSDPXXXXXXXXXXXNF-EKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
++ NF E+ L N + K R+ + RL +A
Sbjct: 83 APANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWK--NAVRQSLNTRLGQVARQL 140
Query: 115 LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
Y+LGD+ S+ D+ + +L Y I+LS S L + R+ R + +L
Sbjct: 141 EHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLSPWPS-LQAFQGRVGGREAVQSAL 195
>pdb|1E6B|A Chain A, Crystal Structure Of A Zeta Class Glutathione
S-Transferase From Arabidopsis Thaliana
Length = 221
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 1 MDFEIRDIDLF--NKPDNIFR-MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS 57
+D+E ++L ++ D+ F+ +NP G VP LV+ D+++ +S I Y+DE++P P L+
Sbjct: 32 LDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYLDEKYPEPPLLP 91
Query: 58 SD 59
D
Sbjct: 92 RD 93
>pdb|3CBU|A Chain A, Crystal Structure Of A Putative Glutathione S-Transferase
(Reut_a1011) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
pdb|3CBU|B Chain B, Crystal Structure Of A Putative Glutathione S-Transferase
(Reut_a1011) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
Length = 214
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 22 PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXXXNFEKEIFIHL 81
P G+VP + L ES +INEY++ +P L+ DP E ++L
Sbjct: 44 PAGKVPYXITESGSLCESEVINEYLEAAYPQTPLLPRDPXQAGKVREIVTFLE----LYL 99
Query: 82 YMLENERNKTSIKGYKRAREEIRDRLITL----APLFLK----NKYMLGDEFSMLDVVIA 133
+ E + G K + +++R + L P F K + Y+ GD F++ D A
Sbjct: 100 ELTARELYPEAFFGGK-VSDNVKERQLKLLSRYVPAFAKLAKFSPYVAGDTFTLADCAAA 158
Query: 134 ---PLLWRLD--YYGINLSKSASPLIKYAERIFSRPS 165
PL+ YG +L P+ +Y + + RPS
Sbjct: 159 VHLPLVSSCTKIIYGKDLLADL-PVKEYLKTLSERPS 194
>pdb|1GNW|A Chain A, Structure Of Glutathione S-Transferase
pdb|1GNW|B Chain B, Structure Of Glutathione S-Transferase
pdb|1BX9|A Chain A, Glutathione S-Transferase In Complex With Herbicide
Length = 211
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50
+DFE+ ++L + K + NP+GQVP + DL L+ES I +YI R+
Sbjct: 26 LDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRY 78
>pdb|2CZ2|A Chain A, Crystal Structure Of Glutathione Transferase Zeta 1-1
(Maleylacetoacetate Isomerase) From Mus Musculus (Form-1
Crystal)
pdb|2CZ3|A Chain A, Crystal Structure Of Glutathione Transferase Zeta 1-1
(Maleylacetoacetate Isomerase) From Mus Musculus (Form-2
Crystal)
pdb|2CZ3|B Chain B, Crystal Structure Of Glutathione Transferase Zeta 1-1
(Maleylacetoacetate Isomerase) From Mus Musculus (Form-2
Crystal)
Length = 223
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Query: 1 MDFEIRDIDLFNKPDNIFR-----MNPYGQVPILVERDLILYESNIINEYIDERFPYPQL 55
+D+EI I+L F +NP QVP L + + +S I EY++E P P+L
Sbjct: 36 IDYEIVPINLIKDGGQQFTEEFQTLNPXKQVPALKIDGITIVQSLAIXEYLEETRPIPRL 95
Query: 56 MSSDPXXXXXXXXXXXNFEKEI--FIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL 113
+ DP I +L +L+ + + A++ I L +
Sbjct: 96 LPQDPQKRAIVRXISDLIASGIQPLQNLSVLKQVGQENQXQW---AQKVITSGFNALEKI 152
Query: 114 F--LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLS 147
KY +GDE S DV + P + + + ++LS
Sbjct: 153 LQSTAGKYCVGDEVSXADVCLVPQVANAERFKVDLS 188
>pdb|4GF0|A Chain A, Crystal Structure Of Glutahtione Transferase Homolog From
Sulfitobacter, Target Efi-501084, With Bound Glutathione
pdb|4GF0|B Chain B, Crystal Structure Of Glutahtione Transferase Homolog From
Sulfitobacter, Target Efi-501084, With Bound Glutathione
Length = 215
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 13 KPDNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXXX 71
KPD + +NP G+VP L +E D IL E+ + +Y+ P L+ +DP
Sbjct: 42 KPDYL-AINPKGRVPALRLEDDTILTETGALLDYVAAIAPKAGLVPTDPTAAAQMRSAMY 100
Query: 72 NFEKEIFI-HLYMLENERNKTSIKGYKRAREEIRDRLITLAPL----FLKNKYMLGDEFS 126
+ + H + + R ++ ++ + + A L+ Y+LG++FS
Sbjct: 101 YLASTMHVAHAHKMRGSRWAKQQSSFEDMTAQVPETMAACADFVESDILRGPYVLGEDFS 160
Query: 127 MLDVVIAPLLWRLDYYGINLSKSASPLI-KYAERIFSRPS 165
+ D + + LD G++ +A P I + +++ +R S
Sbjct: 161 LADPYLFVVCNWLDGDGVD--TAAYPKITTFMQQMTARAS 198
>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
pdb|2IJ9|B Chain B, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
Length = 219
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 635 IVIGGGNICRGISNKIQNIDRST--ADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
+V+GGG + R + + S DY+G+ AT +N++ L IS + SA
Sbjct: 37 VVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLL---------ISAIPSA--- 84
Query: 693 EKFLESYIPLNAIKYLEEGKV--VIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVD 750
+P++ ++ E K+ V+ GG P TTD VD
Sbjct: 85 ----AKKVPVDFMEAEELSKLYRVVVMGGT-FPGHTTDATAALLAEFIKADVFINATNVD 139
Query: 751 GIYNSDPNKCLSAIIYKKITFDEVI 775
G+Y++DP SA+ Y +++ +++
Sbjct: 140 GVYSADPKSDTSAVKYDRLSPQQLV 164
>pdb|1GWC|A Chain A, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|B Chain B, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|C Chain C, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
Length = 230
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 1 MDFEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERFPY--PQLMS 57
+ +E + DL+ K + + + NP + ++P+L+ + ES II +YIDE F P L+
Sbjct: 30 LSYEDVEEDLYKKSELLLKSNPVHKKIPVLIHNGAPVCESMIILQYIDEVFASTGPSLLP 89
Query: 58 SDP 60
+DP
Sbjct: 90 ADP 92
>pdb|2XZM|B Chain B, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|B Chain B, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 241
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 49/191 (25%)
Query: 191 NPKMSSYIFGHR--NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA 248
N +M YI H+ N IH IN+E+T + A R I + + ++ R I
Sbjct: 26 NNQMKRYI-SHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIK 84
Query: 249 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQ 308
RW G LTN++T+K R+ L +T+
Sbjct: 85 FAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRV----LIVTD------------------ 122
Query: 309 MKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIP 368
P + F A+ EA +NIP+I + D++ ++ VIP
Sbjct: 123 ----------------PRSDF--------QAIKEASYVNIPVIALCDSDSPLAYVDVVIP 158
Query: 369 GNDDSAKSIAL 379
N+ S +SI++
Sbjct: 159 CNNRSTESISM 169
>pdb|3LHP|S Chain S, Crystal Structure Of Hiv Epitope-Scaffold
4e10_d0_1isea_004_n 4e10 Fv Complex
pdb|3LHP|T Chain T, Crystal Structure Of Hiv Epitope-Scaffold
4e10_d0_1isea_004_n 4e10 Fv Complex
Length = 123
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 42/74 (56%)
Query: 933 TKERREEIVKLIKNITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTD 992
T+ER ++ +K+++ E+ ++++R + RD+N+ + + ++ +D+QKLTD
Sbjct: 44 TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTD 103
Query: 993 KFILEINQLLINKE 1006
I +I L + E
Sbjct: 104 AAIKKIEAALADME 117
>pdb|3RBT|A Chain A, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|B Chain B, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|C Chain C, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|D Chain D, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
Length = 246
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 22/149 (14%)
Query: 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILV----ERDLILYESNIINEYIDERFPYPQLM 56
+ +E+ +D P+ NP ++P+L + D L+ES +I +Y+DE++ L
Sbjct: 50 IKYEVYRLDPLRLPEWFRAKNPRLKIPVLEIPTDQGDRFLFESVVICDYLDEKYTRHTLH 109
Query: 57 SSDPXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK 116
S DP F NE K S++ + +++I +F K
Sbjct: 110 SHDPYVKAQDRLLIERF------------NELIKGSLECFDTNFAFGSEQIIQTLEIFEK 157
Query: 117 ------NKYMLGDEFSMLDVVIAPLLWRL 139
Y G+ MLD ++ P + RL
Sbjct: 158 ELTNRGTNYFGGNRPGMLDYMVWPWVERL 186
>pdb|4GLT|A Chain A, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
pdb|4GLT|B Chain B, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
pdb|4GLT|C Chain C, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
pdb|4GLT|D Chain D, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
Length = 225
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 21 NPYGQVPILVERD-LILYESNIINEYIDERFPYPQLMSSD 59
NP G++P+L+ D LY+S +I EY+D R P L+ D
Sbjct: 66 NPLGKIPVLILPDGESLYDSRVIVEYLDHRTPVAHLIPQD 105
>pdb|2PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|B Chain B, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|C Chain C, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|D Chain D, Glutathione Transferase From Proteus Mirabilis
pdb|1PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
Length = 203
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 15/179 (8%)
Query: 1 MDFEIRDIDLFNKP----DNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQL 55
+DF I IDL K + +NP GQVP+L ++ IL E I +Y+ + P L
Sbjct: 23 LDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLKPDRNL 82
Query: 56 MSSDPXXXXXXXXXXXNF-EKEI---FIHLYMLENERNKTSIKGYKRAREEIRDRLITLA 111
++ NF E+ + L+ + + + + +++ + + +
Sbjct: 83 IAPPKALERYHQIEWLNFLASEVHKGYSPLFSSDTPESYLPV-----VKNKLKSKFVYIN 137
Query: 112 PLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
+ K K + GD F++ D + L + ++L+ S L Y RI RP+ +L
Sbjct: 138 DVLSKQKCVCGDHFTVADAYLFTLSQWAPHVALDLT-DLSHLQDYLARIAQRPNVHSAL 195
>pdb|1F2E|A Chain A, Structure Of Sphingomonad, Glutathione S-Transferase
Complexed With Glutathione
pdb|1F2E|B Chain B, Structure Of Sphingomonad, Glutathione S-Transferase
Complexed With Glutathione
pdb|1F2E|C Chain C, Structure Of Sphingomonad, Glutathione S-Transferase
Complexed With Glutathione
pdb|1F2E|D Chain D, Structure Of Sphingomonad, Glutathione S-Transferase
Complexed With Glutathione
Length = 201
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 7/174 (4%)
Query: 2 DFEIRDIDLFNKP----DNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQLM 56
DFE +DL + ++ +NP G+VP L ++ L E+ I YI ++ P L
Sbjct: 24 DFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIADQNPASGLA 83
Query: 57 SSDPXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK 116
++ +F F H + TS + A E +++ L L
Sbjct: 84 PAEGSLDRYRLLSRLSFLGSEF-HKAFVPLFAPATSDEAKAAAAESVKNHLAALDKELAG 142
Query: 117 NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
+ G+ FS+ D+ + +L Y GI+++ + L YA +I RP+ +L
Sbjct: 143 RDHYAGNAFSVADIYLYVMLGWPAYVGIDMAAYPA-LGAYAGKIAQRPAVGAAL 195
>pdb|1AXD|A Chain A, Structure Of Glutathione S-transferase-i Bound With The
Ligand Lactoylglutathione
pdb|1AXD|B Chain B, Structure Of Glutathione S-transferase-i Bound With The
Ligand Lactoylglutathione
Length = 209
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 2 DFEIRDIDL----FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLM 56
D+EI I+ P+++ R NP+GQVP L + DL L+ES I +Y R P+L+
Sbjct: 27 DYEIVPINFATAEHKSPEHLVR-NPFGQVPALQDGDLYLFESRAICKYA-ARKNKPELL 83
>pdb|1BYE|A Chain A, Glutathione S-Transferase I From Mais In Complex With
Atrazine Glutathione Conjugate
pdb|1BYE|B Chain B, Glutathione S-Transferase I From Mais In Complex With
Atrazine Glutathione Conjugate
pdb|1BYE|C Chain C, Glutathione S-Transferase I From Mais In Complex With
Atrazine Glutathione Conjugate
pdb|1BYE|D Chain D, Glutathione S-Transferase I From Mais In Complex With
Atrazine Glutathione Conjugate
Length = 213
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 2 DFEIRDIDL----FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLM 56
D+EI I+ P+++ R NP+GQVP L + DL L+ES I +Y R P+L+
Sbjct: 27 DYEIVPINFATAEHKSPEHLVR-NPFGQVPALQDGDLYLFESRAICKYA-ARKNKPELL 83
>pdb|1FW1|A Chain A, Glutathione Transferase ZetaMALEYLACETOACETATE ISOMERASE
Length = 216
Score = 37.0 bits (84), Expect = 0.063, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 20 MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
+NP QVP L + +++S I EY++E P P+L+ DP
Sbjct: 53 LNPMKQVPTLKIDGITIHQSLAIIEYLEETRPTPRLLPQDP 93
>pdb|3R2Q|A Chain A, Crystal Structure Analysis Of Yibf From E. Coli
Length = 202
Score = 36.6 bits (83), Expect = 0.076, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 11 FNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXX 69
+N + + + NP G+VP+LV E ++S II EYI+ P ++ DP
Sbjct: 34 YNADNGVAQFNPLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKI 93
Query: 70 XXNFEKEIFIHLYMLENERNKTSIKGYK---RAREEIRDRLITLAPLFLKNKYMLGDEFS 126
+ + L + + + + R RE+I +R + + +L + + D +
Sbjct: 94 EALADGIMDAGLVSVREQARPAAQQSEDELLRQREKI-NRSLDVLEGYLVDGTLKTDTVN 152
Query: 127 MLDVVIAPLLWRLDYYGI--NLSKSASPLIKYAERIFSRPSYMESLTP 172
+ + IA + L++ + L+K E +FSR S+ + P
Sbjct: 153 LATIAIACAVGYLNFRRVAPGWXVDRPHLVKLVENLFSRESFARTEPP 200
>pdb|1WIH|A Chain A, Solution Structure Of Rsgi Ruh-021, A Domain Ii Of
Ribosome Recycling Factor From Mouse Cdna
Length = 84
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 857 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLG 915
G + LD+I V + L +I I++ + I + E ++ KAI E+ +
Sbjct: 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60
Query: 916 LNPTIQGNIIYVSIPPLT 933
LNP ++G +I V IP +T
Sbjct: 61 LNPEVEGTLIRVPIPKVT 78
>pdb|3UBK|A Chain A, Crystal Structure Of Glutathione Transferase (Target
Efi-501770) From Leptospira Interrogans
pdb|3UBK|B Chain B, Crystal Structure Of Glutathione Transferase (Target
Efi-501770) From Leptospira Interrogans
pdb|3UBL|A Chain A, Crystal Structure Of Glutathione Transferase (Target
Efi-501770) From Leptospira Interrogans With Gsh Bound
pdb|3UBL|B Chain B, Crystal Structure Of Glutathione Transferase (Target
Efi-501770) From Leptospira Interrogans With Gsh Bound
Length = 242
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 15 DNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY-PQLMSSDP 60
++ +++P G++P+L ++ES I E++D FP P+L+ DP
Sbjct: 40 EDFLKISPMGKIPVLEMDGKFIFESGAILEFLDTIFPQTPKLIPEDP 86
>pdb|4IGJ|A Chain A, Crystal Structure Of Maleylacetoacetate Isomerase From
Anaeromyxobacter Dehalogenans 2cp-1, Target Efi-507175
pdb|4IGJ|B Chain B, Crystal Structure Of Maleylacetoacetate Isomerase From
Anaeromyxobacter Dehalogenans 2cp-1, Target Efi-507175
Length = 242
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 1 MDFEIRDIDLFNKPDNIFRM-----NPYGQVPIL-VERD---LILYESNIINEYIDERFP 51
+ +E R +DL + F+ NP QVP+L VE D +L +S I E+++ER P
Sbjct: 48 LAYEYRAVDLLAQEQ--FQAAHQARNPMSQVPVLEVEEDGRTHLLVQSMAILEWLEERHP 105
Query: 52 YPQLMSSD 59
P L+ D
Sbjct: 106 EPALLPPD 113
>pdb|4HZ4|A Chain A, Crystal Structure Of Glutathione S-Transferase B4xh91
(Target Efi- 501787) From Actinobacillus
Pleuropneumoniae
Length = 217
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 40/184 (21%), Positives = 85/184 (46%), Gaps = 27/184 (14%)
Query: 1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLM 56
+D+E++ D P+ + +P G+ P+L + DL+L E N I +++ +R+
Sbjct: 26 LDYELKIYDRLEGTGFAPEELKAQHPLGKAPVLQDGDLVLAEGNAIIQHLLDRYD----- 80
Query: 57 SSDPXXXXXXXXXXXNFEKEIFIHLYMLE-NERNKTSIKG-------YKRAREEIRDRLI 108
+ + N+ + I M N S KG Y A+ + +
Sbjct: 81 TENRFTPAHKTDAYSNYVYWLAISASMFSANLLALVSKKGDLGDFAQYTNAQVGLYFSHV 140
Query: 109 TLAPLFLKNK-YMLGDEFSMLDVVIA-PLLWRLDYYGINLSKSASP-LIKYAERIFSRPS 165
+ L+ K +++G++ + D ++ PL W L+Y ++K+ P + +Y E+I + P+
Sbjct: 141 EKS---LEGKTWIVGEQLTGADFALSFPLQWGLNY----VNKADYPNITRYLEQIETHPA 193
Query: 166 YMES 169
Y+++
Sbjct: 194 YLKA 197
>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 252
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 47/213 (22%), Positives = 73/213 (34%), Gaps = 52/213 (24%)
Query: 170 LTP--AEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQ 226
LTP A+ ++ A H G R Y+F R + +H+IN+ KT A R I
Sbjct: 9 LTPEDAQLLLAANTHLG--ARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAA 66
Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
+ + + R V+ A P I R+ G TN+ T + KE
Sbjct: 67 IPNPEDVVAISSRTFGQRAVLKFAAHTGATP-IAGRFTPGSFTNYIT-----RSFKE--- 117
Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
P + + D A+ EA +
Sbjct: 118 --------------------------------------PRLVIVTDPRSDAQAIKEASYV 139
Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
NIP+I + D + + ++ IP N+ SI L
Sbjct: 140 NIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGL 172
>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 193
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 47/213 (22%), Positives = 73/213 (34%), Gaps = 52/213 (24%)
Query: 170 LTP--AEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQ 226
LTP A+ ++ A H G R Y+F R + +H+IN+ KT A R I
Sbjct: 1 LTPEDAQLLLAANTHLG--ARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAA 58
Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
+ + + R V+ A P I R+ G TN+ T + KE
Sbjct: 59 IPNPEDVVAISSRTFGQRAVLKFAAHTGATP-IAGRFTPGSFTNYIT-----RSFKE--- 109
Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
P + + D A+ EA +
Sbjct: 110 --------------------------------------PRLVIVTDPRSDAQAIKEASYV 131
Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
NIP+I + D + + ++ IP N+ SI L
Sbjct: 132 NIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGL 164
>pdb|4IEL|A Chain A, Crystal Structure Of A Glutathione S-Transferase Family
Protein From Burkholderia Ambifaria, Target Efi-507141,
With Bound Glutathione
pdb|4IEL|B Chain B, Crystal Structure Of A Glutathione S-Transferase Family
Protein From Burkholderia Ambifaria, Target Efi-507141,
With Bound Glutathione
Length = 229
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 20 MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
+NP G VP++ + +L+ESN I Y+ R+ L ++P
Sbjct: 69 LNPNGLVPVIKDDGFVLWESNTIIRYLANRYGGDALYPAEP 109
>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 185
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 325 PDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
P + + D A+ EA +NIP+I + D + + ++ IP N+ SI L
Sbjct: 105 PRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGL 159
>pdb|3BBY|A Chain A, Crystal Structure Of Glutathione S-Transferase
(Np_416804.1) From Escherichia Coli K12 At 1.85 A
Resolution
Length = 215
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
Query: 1 MDFEIRDIDLFNKPDNIFRMNP----YGQ---VPILVERDLILYESNIINEYIDERFPYP 53
+ F I+ IDL D+ + P YGQ VP+L D L ES+ I EY+++RF P
Sbjct: 32 LSFHIKTIDL----DSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPP 87
>pdb|2ON5|A Chain A, Structure Of Nagst-2
pdb|2ON5|B Chain B, Structure Of Nagst-2
pdb|2ON5|C Chain C, Structure Of Nagst-2
pdb|2ON5|D Chain D, Structure Of Nagst-2
pdb|2ON5|E Chain E, Structure Of Nagst-2
pdb|2ON5|F Chain F, Structure Of Nagst-2
pdb|2ON5|G Chain G, Structure Of Nagst-2
pdb|2ON5|H Chain H, Structure Of Nagst-2
Length = 206
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 22 PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXXXNFEKEIFIHL 81
P+GQ+P+L E L +S I Y+ +F + + ++ EI +L
Sbjct: 47 PFGQIPVLEEDGKQLAQSFAIARYLSRKFGFAGKTPFEEALVDSVADQYKDYINEIRPYL 106
Query: 82 YMLENERNKTSIKGYKRAREEIRDRLITLAPLFL---KNKYMLGDEFSMLDVVIA 133
++ K +K R++ FL K+ Y++GD + D+ +A
Sbjct: 107 RVVAGVDQGDPEKLFKELLLPAREKFFGFMKKFLEKSKSGYLVGDSVTYADLCLA 161
>pdb|3QR6|A Chain A, Crystal Structure Analysis Of H185f Mutant Of Human Clic1
Length = 241
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 78/195 (40%), Gaps = 27/195 (13%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF---PYPQLMSSD 59
F + +D + + + ++ P GQ+P L+ + ++N I E+++ YP+L + +
Sbjct: 41 FNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALN 100
Query: 60 PXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL------ 113
P F I L + K +K K + D +T +PL
Sbjct: 101 PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK-----VLDNYLT-SPLPEEVDE 154
Query: 114 -------FLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIF 161
+ K++ G+E ++ D + P L+ + Y G + ++ + +Y +
Sbjct: 155 TSAEDEGVSQRKFLDGNELTLADCNLLPKLFIVQVVCKKYRGFTIPEAFRGVHRYLSNAY 214
Query: 162 SRPSYMESLTPAEKI 176
+R + + E+I
Sbjct: 215 AREEFASTCPDDEEI 229
>pdb|4ECI|A Chain A, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Acetate
pdb|4ECI|B Chain B, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Acetate
pdb|4ECJ|A Chain A, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Glutathione
pdb|4ECJ|B Chain B, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Glutathione
Length = 244
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 13 KPDNIFRMNPYGQVPILVER---DLILYESNIINEYIDERFPYPQLMSSD 59
K R+NP G++P +V+R D ++ES I Y+ E+ QLM +D
Sbjct: 41 KAPEFLRINPNGRIPAIVDRDNDDFAVFESGAILIYLAEK--TGQLMPAD 88
>pdb|3P90|A Chain A, Crystal Structure Analysis Of H207f Mutant Of Human Clic1
Length = 241
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF---PYPQLMSSD 59
F + +D + + + ++ P GQ+P L+ + ++N I E+++ YP+L + +
Sbjct: 41 FNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALN 100
Query: 60 PXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL------ 113
P F I L + K +K K + D +T +PL
Sbjct: 101 PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK-----VLDNYLT-SPLPEEVDE 154
Query: 114 -------FLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIF 161
+ K++ G+E ++ D + P L + Y G + ++ + +Y +
Sbjct: 155 TSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVFRYLSNAY 214
Query: 162 SRPSYMESLTPAEKI 176
+R + + E+I
Sbjct: 215 AREEFASTCPDDEEI 229
>pdb|2C3N|A Chain A, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|B Chain B, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|C Chain C, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|D Chain D, Human Glutathione-S-Transferase T1-1, Apo Form
Length = 247
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 3 FEIRDIDLFNK---PDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53
FE+R +DL D ++NP +VP L + D L ES I Y+ ++ P
Sbjct: 35 FELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVP 88
>pdb|2C3Q|A Chain A, Human Glutathione-S-Transferase T1-1 W234r Mutant,
Complex With S-Hexylglutathione
pdb|2C3Q|B Chain B, Human Glutathione-S-Transferase T1-1 W234r Mutant,
Complex With S-Hexylglutathione
pdb|2C3Q|C Chain C, Human Glutathione-S-Transferase T1-1 W234r Mutant,
Complex With S-Hexylglutathione
pdb|2C3Q|D Chain D, Human Glutathione-S-Transferase T1-1 W234r Mutant,
Complex With S-Hexylglutathione
pdb|2C3T|A Chain A, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|B Chain B, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|C Chain C, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|D Chain D, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
Length = 247
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 3 FEIRDIDLFNK---PDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53
FE+R +DL D ++NP +VP L + D L ES I Y+ ++ P
Sbjct: 35 FELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVP 88
>pdb|2JL4|A Chain A, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
pdb|2JL4|B Chain B, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
Length = 213
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 20 MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSD 59
+NP VP L +L +S I E+++E++P P L+ +D
Sbjct: 47 LNPQQLVPALDTGAQVLIQSPAIIEWLEEQYPTPALLPAD 86
>pdb|2V6K|A Chain A, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex
With Substrate Analogue Dicarboxyethyl Glutathione
pdb|2V6K|B Chain B, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex
With Substrate Analogue Dicarboxyethyl Glutathione
Length = 214
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 20 MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSD 59
+NP VP L +L +S I E+++E++P P L+ +D
Sbjct: 48 LNPQQLVPALDTGAQVLIQSPAIIEWLEEQYPTPALLPAD 87
>pdb|2ON7|A Chain A, Structure Of Nagst-1
pdb|2ON7|B Chain B, Structure Of Nagst-1
pdb|2ON7|C Chain C, Structure Of Nagst-1
pdb|2ON7|D Chain D, Structure Of Nagst-1
Length = 206
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 22 PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXXXNFEKEIFIHL 81
P+GQVP+L L +S I Y+ +F + + D ++ EI
Sbjct: 47 PFGQVPVLEVDGKQLAQSLAICRYLARQFGFAGKSTFDEAVVDSLADQYSDYRVEIKSFF 106
Query: 82 YMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK---YMLGDEFSMLDVVIA 133
Y + R + K RD+ FLK +++GD + +D++++
Sbjct: 107 YTVIGMREGDVEQLKKEVLLPARDKFFGFITKFLKKSPSGFLVGDSLTWVDLLVS 161
>pdb|3ZEY|C Chain C, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 277
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 325 PDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
P + + D A+ EA +NIP+I DT+ + ++ IP N+ SI++
Sbjct: 155 PRVLVVTDPRTDHQALREASLVNIPVIAFCDTDAPLEFVDIAIPCNNRGRHSISM 209
>pdb|3SWL|A Chain A, Crystal Structure Analysis Of H74a Mutant Of Human Clic1
Length = 236
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF---PYPQLMSSD 59
F + +D + + + ++ P GQ+P L+ + ++N I E+++ YP+L + +
Sbjct: 36 FNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVATDTNKIEEFLEAVLCPPRYPKLAALN 95
Query: 60 PXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL------ 113
P F I L + K +K K + D +T +PL
Sbjct: 96 PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK-----VLDNYLT-SPLPEEVDE 149
Query: 114 -------FLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIF 161
+ K++ G+E ++ D + P L + Y G + ++ + +Y +
Sbjct: 150 TSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAY 209
Query: 162 SRPSYMESLTPAEKI 176
+R + + E+I
Sbjct: 210 AREEFASTCPDDEEI 224
>pdb|3TGZ|A Chain A, Crystal Structure Analysis Of W35fH207W MUTANT OF HUMAN
CLIC1
pdb|3TGZ|B Chain B, Crystal Structure Analysis Of W35fH207W MUTANT OF HUMAN
CLIC1
Length = 241
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF---PYPQLMSSD 59
F + +D + + + ++ P GQ+P L+ + ++N I E+++ YP+L + +
Sbjct: 41 FNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALN 100
Query: 60 PXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL------ 113
P F I L + K +K K + D +T +PL
Sbjct: 101 PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK-----VLDNYLT-SPLPEEVDE 154
Query: 114 -------FLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIF 161
+ K++ G+E ++ D + P L + Y G + ++ + +Y +
Sbjct: 155 TSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVWRYLSNAY 214
Query: 162 SRPSYMESLTPAEKI 176
+R + + E+I
Sbjct: 215 AREEFASTCPDDEEI 229
>pdb|3O3T|A Chain A, Crystal Structure Analysis Of M32a Mutant Of Human Clic1
Length = 241
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF---PYPQLMSSD 59
F + +D + + + ++ P GQ+P L+ + ++N I E+++ YP+L + +
Sbjct: 41 FNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALN 100
Query: 60 PXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL------ 113
P F I L + K +K K + D +T +PL
Sbjct: 101 PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK-----VLDNYLT-SPLPEEVDE 154
Query: 114 -------FLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIF 161
+ K++ G+E ++ D + P L + Y G + ++ + +Y +
Sbjct: 155 TSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAY 214
Query: 162 SRPSYMESLTPAEKI 176
+R + + E+I
Sbjct: 215 AREEFASTCPDDEEI 229
>pdb|1RK4|A Chain A, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
pdb|1RK4|B Chain B, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
Length = 243
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF---PYPQLMSSD 59
F + +D + + + ++ P GQ+P L+ + ++N I E+++ YP+L + +
Sbjct: 43 FNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALN 102
Query: 60 PXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL------ 113
P F I L + K +K K + D +T +PL
Sbjct: 103 PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK-----VLDNYLT-SPLPEEVDE 156
Query: 114 -------FLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIF 161
+ K++ G+E ++ D + P L + Y G + ++ + +Y +
Sbjct: 157 TSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAY 216
Query: 162 SRPSYMESLTPAEKI 176
+R + + E+I
Sbjct: 217 AREEFASTCPDDEEI 231
>pdb|2PVQ|A Chain A, Crystal Structure Of Ochrobactrum Anthropi Glutathione
Transferase Cys10ala Mutant With Glutathione Bound At
The H-Site
Length = 201
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)
Query: 1 MDFEIRDIDLFNKPD----NIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQL 55
+ +E+ +DL K + F +NP G VP L V+ ++ ++ I +YI +
Sbjct: 23 LPYELEAVDLKAKKTADGGDYFAVNPRGAVPALEVKPGTVITQNAAILQYIGDHSDVAAF 82
Query: 56 MSSDPXXXXXXXXXXXNFEKEI---FIHLYM--LENERNKTSIKGYKRAREEIRDRLITL 110
+ F ++ F L+ L E I R ++
Sbjct: 83 KPAYGSIERARLQEALGFCSDLHAAFSGLFAPNLSEEARAGVIANINRRLGQLE------ 136
Query: 111 APLFLKNKYMLGDEFSMLDVVIAPLL-WRLDYYGINLSKSASP-LIKYAERIFSRPSYME 168
A L KN Y LGD+F+ D + ++ W + G L SA P +K ER+ +RP+ +
Sbjct: 137 AMLSDKNAYWLGDDFTQPDAYASVIIGWGV---GQKLDLSAYPKALKLRERVLARPNVQK 193
Query: 169 SL 170
+
Sbjct: 194 AF 195
>pdb|2NTO|A Chain A, Structure Of The Glutathione Transferase From Ochrobactrum
Anthropi In Complex With Glutathione
Length = 201
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)
Query: 1 MDFEIRDIDLFNKPD----NIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQL 55
+ +E+ +DL K + F +NP G VP L V+ ++ ++ I +YI +
Sbjct: 23 LPYELEAVDLKAKKTADGGDYFAVNPRGAVPALEVKPGTVITQNAAILQYIGDHSDVAAF 82
Query: 56 MSSDPXXXXXXXXXXXNFEKEI---FIHLYM--LENERNKTSIKGYKRAREEIRDRLITL 110
+ F ++ F L+ L E I R ++
Sbjct: 83 KPAYGSIERARLQEALGFCSDLHAAFSGLFAPNLSEEARAGVIANINRRLGQLE------ 136
Query: 111 APLFLKNKYMLGDEFSMLDVVIAPLL-WRLDYYGINLSKSASP-LIKYAERIFSRPSYME 168
A L KN Y LGD+F+ D + ++ W + G L SA P +K ER+ +RP+ +
Sbjct: 137 AMLSDKNAYWLGDDFTQPDAYASVIIGWGV---GQKLDLSAYPKALKLRERVLARPNVQK 193
Query: 169 SL 170
+
Sbjct: 194 AF 195
>pdb|3P8W|A Chain A, Crystal Structure Analysis Of R29mE81M DOUBLE MUTANT OF
HUMAN CLIC1
Length = 241
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF---PYPQLMSSD 59
F + +D + + + ++ P GQ+P L+ + ++N I E+++ YP+L + +
Sbjct: 41 FNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIMEFLEAVLCPPRYPKLAALN 100
Query: 60 PXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL------ 113
P F I L + K +K K + D +T +PL
Sbjct: 101 PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK-----VLDNYLT-SPLPEEVDE 154
Query: 114 -------FLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIF 161
+ K++ G+E ++ D + P L + Y G + ++ + +Y +
Sbjct: 155 TSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAY 214
Query: 162 SRPSYMESLTPAEKI 176
+R + + E+I
Sbjct: 215 AREEFASTCPDDEEI 229
>pdb|3UVH|A Chain A, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
pdb|3UVH|B Chain B, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
Length = 241
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF---PYPQLMSSD 59
F + +D + + + ++ P GQ+P L+ + ++N I E+++ YP+L + +
Sbjct: 41 FNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIMEFLEAVLCPPRYPKLAALN 100
Query: 60 PXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL------ 113
P F I L + K +K K + D +T +PL
Sbjct: 101 PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK-----VLDNYLT-SPLPEEVDE 154
Query: 114 -------FLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIF 161
+ K++ G+E ++ D + P L + Y G + ++ + +Y +
Sbjct: 155 TSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAY 214
Query: 162 SRPSYMESLTPAEKI 176
+R + + E+I
Sbjct: 215 AREEFASTCPDDEEI 229
>pdb|4IQA|A Chain A, Crystal Structure Analysis Of The E228l Mutant Of Human
Clic1
pdb|4IQA|B Chain B, Crystal Structure Analysis Of The E228l Mutant Of Human
Clic1
Length = 236
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 80/197 (40%), Gaps = 28/197 (14%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF---PYPQLMSSD 59
F + +D + + + ++ P GQ+P L+ + ++N I E+++ YP+L + +
Sbjct: 36 FNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALN 95
Query: 60 PXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL------ 113
P F I L + K +K K + D +T +PL
Sbjct: 96 PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK-----VLDNYLT-SPLPEEVDE 149
Query: 114 -------FLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIF 161
+ K++ G+E ++ D + P L + Y G + ++ + +Y +
Sbjct: 150 TSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAY 209
Query: 162 SRPSYMESLTPAEKIMQ 178
+R + S P +++++
Sbjct: 210 AREEF-ASTCPDDELIE 225
>pdb|3LG6|A Chain A, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis
pdb|3LG6|B Chain B, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis
pdb|3LG6|C Chain C, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis
pdb|3LG6|D Chain D, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis
pdb|3N5O|A Chain A, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis Bound To Glutathione
pdb|3N5O|B Chain B, Crystal Structure Of Putative Glutathione Transferase From
Coccidioides Immitis Bound To Glutathione
Length = 235
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 118 KYMLGDEFSMLDVVIAPLLWRLDYYGINLSK 148
++ +GDE ++ DV + P +W + G++L++
Sbjct: 171 RFCVGDEITLADVCLVPAVWAAERVGMDLAR 201
>pdb|2WS2|A Chain A, The 2 Angstrom Structure Of A Nu-Class Gst From Haemonchus
Contortus
pdb|2WS2|B Chain B, The 2 Angstrom Structure Of A Nu-Class Gst From Haemonchus
Contortus
Length = 204
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 7/147 (4%)
Query: 22 PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXXXNFEKEIFIHL 81
P+GQ+P+L L +S I Y+ +F Y + + +F E+ +
Sbjct: 47 PFGQLPVLEVDGKQLPQSVAIVRYLARKFGYAGKSAWEEAVVDSIADQFKDFLNEVRPYF 106
Query: 82 YMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK-NK--YMLGDEFSMLDVVIAPLLWR 138
+L K E R + T+ LK NK Y++GD + D+ +A + +
Sbjct: 107 KVLLGMDQGDLKALEKDVFEPARQKFFTIVTKILKENKTGYLVGDSLTFADLYVAEMGFT 166
Query: 139 LDYYGINLSKSASPLIK-YAERIFSRP 164
Y + P +K +AE++ S P
Sbjct: 167 EHYPKL---YDGFPEVKAHAEKVRSNP 190
>pdb|2VXR|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype G
Binding Domain
Length = 482
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 838 QKMLNTIKILKENLKKVRTGRA--NIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQ 895
Q NT+K N + T N GM NI +KY + + + A T FN+ I+ Q
Sbjct: 269 QSSTNTLKDFWGNPLRYDTQYYLFNQGM-QNIYIKYFSKAS-MGETAPRTNFNNAAINYQ 326
Query: 896 PFEKEMSSIIKKAINEANLGLNPTI-QGNIIYVSIPPLTKE 935
+ IIKKA N N+ + + +G+ IY++I ++ E
Sbjct: 327 NLYLGLRFIIKKASNSRNINNDNIVREGDYIYLNIDNISDE 367
>pdb|3MPP|G Chain G, Botulinum Neurotoxin Type G Receptor Binding Domain
Length = 433
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 838 QKMLNTIKILKENLKKVRTGRA--NIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQ 895
Q NT+K N + T N GM NI +KY + + + A T FN+ I+ Q
Sbjct: 220 QSSTNTLKDFWGNPLRYDTQYYLFNQGM-QNIYIKYFSKAS-MGETAPRTNFNNAAINYQ 277
Query: 896 PFEKEMSSIIKKAINEANLGLNPTI-QGNIIYVSIPPLTKE 935
+ IIKKA N N+ + + +G+ IY++I ++ E
Sbjct: 278 NLYLGLRFIIKKASNSRNINNDNIVREGDYIYLNIDNISDE 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,446,205
Number of Sequences: 62578
Number of extensions: 983554
Number of successful extensions: 2846
Number of sequences better than 100.0: 139
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 2697
Number of HSP's gapped (non-prelim): 157
length of query: 1012
length of database: 14,973,337
effective HSP length: 108
effective length of query: 904
effective length of database: 8,214,913
effective search space: 7426281352
effective search space used: 7426281352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)