Query psy3752
Match_columns 1012
No_of_seqs 944 out of 6254
Neff 8.0
Searched_HMMs 46136
Date Sat Aug 17 00:37:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0052 RpsB Ribosomal protein 100.0 3.6E-73 7.9E-78 576.6 22.8 224 169-394 3-226 (252)
2 PRK12311 rpsB 30S ribosomal pr 100.0 2E-65 4.3E-70 555.3 23.9 221 173-393 1-221 (326)
3 TIGR01011 rpsB_bact ribosomal 100.0 4.9E-64 1.1E-68 525.5 23.9 222 170-392 2-223 (225)
4 PRK05299 rpsB 30S ribosomal pr 100.0 6.8E-64 1.5E-68 532.7 24.6 224 169-393 3-226 (258)
5 CHL00067 rps2 ribosomal protei 100.0 9.4E-62 2E-66 509.9 23.3 223 169-392 7-229 (230)
6 COG0233 Frr Ribosome recycling 100.0 2E-57 4.2E-62 442.9 20.6 185 828-1012 3-187 (187)
7 PF00318 Ribosomal_S2: Ribosom 100.0 1.9E-56 4E-61 467.3 21.6 211 176-392 1-211 (211)
8 COG0264 Tsf Translation elonga 100.0 4.6E-56 1E-60 462.8 23.6 217 389-612 4-226 (296)
9 cd01425 RPS2 Ribosomal protein 100.0 3.8E-54 8.1E-59 444.1 20.8 193 176-390 1-193 (193)
10 TIGR01012 Sa_S2_E_A ribosomal 100.0 1.2E-53 2.5E-58 430.8 17.4 171 173-393 6-177 (196)
11 PRK00083 frr ribosome recyclin 100.0 6.5E-53 1.4E-57 425.8 22.3 183 830-1012 3-185 (185)
12 PRK04020 rps2P 30S ribosomal p 100.0 3.6E-53 7.8E-58 429.9 18.2 184 170-406 10-194 (204)
13 PRK09377 tsf elongation factor 100.0 1.7E-52 3.6E-57 448.3 23.7 205 390-596 5-211 (290)
14 TIGR00116 tsf translation elon 100.0 1.8E-52 3.8E-57 448.1 23.0 205 390-596 4-211 (290)
15 TIGR00496 frr ribosome recycli 100.0 1.1E-51 2.4E-56 413.4 20.8 175 838-1012 2-176 (176)
16 PTZ00254 40S ribosomal protein 100.0 8.9E-52 1.9E-56 428.2 17.1 183 173-406 15-198 (249)
17 cd00520 RRF Ribosome recycling 100.0 2.6E-50 5.6E-55 407.1 21.7 178 833-1010 2-179 (179)
18 KOG0832|consensus 100.0 5.4E-50 1.2E-54 396.7 14.9 198 167-393 45-242 (251)
19 PF01765 RRF: Ribosome recycli 100.0 2.8E-44 6.1E-49 360.9 19.4 165 846-1010 1-165 (165)
20 PRK12332 tsf elongation factor 100.0 1.6E-41 3.4E-46 345.1 16.1 147 390-536 4-198 (198)
21 CHL00098 tsf elongation factor 100.0 8.6E-41 1.9E-45 339.1 15.3 147 391-537 2-197 (200)
22 KOG4759|consensus 100.0 2.4E-40 5.3E-45 337.3 18.3 193 818-1012 70-263 (263)
23 KOG1071|consensus 100.0 2.7E-40 5.9E-45 342.9 16.6 187 390-576 46-281 (340)
24 COG0528 PyrH Uridylate kinase 100.0 5.8E-38 1.3E-42 318.5 17.7 233 589-823 5-238 (238)
25 PRK14556 pyrH uridylate kinase 100.0 1.6E-36 3.4E-41 318.9 18.5 233 589-823 15-248 (249)
26 PRK14558 pyrH uridylate kinase 100.0 3E-33 6.6E-38 299.1 20.4 229 591-823 2-230 (231)
27 PF00889 EF_TS: Elongation fac 100.0 1.4E-33 3E-38 295.0 17.2 154 442-597 1-159 (221)
28 PRK00358 pyrH uridylate kinase 100.0 3.8E-33 8.2E-38 298.9 19.3 229 592-822 3-231 (231)
29 PRK14557 pyrH uridylate kinase 100.0 6.3E-33 1.4E-37 296.2 17.3 236 589-826 4-241 (247)
30 cd04239 AAK_UMPK-like AAK_UMPK 100.0 1.8E-32 3.9E-37 292.9 20.6 228 592-822 2-229 (229)
31 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 1E-32 2.2E-37 294.8 18.2 229 592-822 3-231 (231)
32 TIGR02075 pyrH_bact uridylate 100.0 1.3E-32 2.9E-37 294.1 18.4 231 590-822 2-233 (233)
33 COG0263 ProB Glutamate 5-kinas 100.0 3.7E-31 8E-36 282.4 16.0 224 589-825 6-261 (369)
34 KOG0830|consensus 100.0 1.6E-30 3.5E-35 259.6 11.5 155 191-392 2-157 (254)
35 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 9.1E-28 2E-32 255.1 16.6 209 592-822 2-221 (221)
36 PRK12314 gamma-glutamyl kinase 100.0 1E-27 2.2E-32 260.4 17.0 231 589-823 9-264 (266)
37 PTZ00489 glutamate 5-kinase; P 100.0 1.5E-27 3.2E-32 256.8 17.1 228 589-824 8-260 (264)
38 cd04256 AAK_P5CS_ProBA AAK_P5C 99.9 1.3E-27 2.9E-32 260.8 16.8 230 589-822 8-284 (284)
39 TIGR02076 pyrH_arch uridylate 99.9 3E-27 6.6E-32 251.4 19.0 209 593-822 2-221 (221)
40 PRK13402 gamma-glutamyl kinase 99.9 2.4E-27 5.3E-32 266.3 17.3 231 589-824 5-258 (368)
41 cd04242 AAK_G5K_ProB AAK_G5K_P 99.9 1E-26 2.2E-31 251.8 18.3 226 592-822 2-251 (251)
42 PRK05429 gamma-glutamyl kinase 99.9 1.3E-26 2.8E-31 263.3 18.3 231 589-824 8-262 (372)
43 TIGR01027 proB glutamate 5-kin 99.9 2E-26 4.3E-31 260.5 17.5 229 591-824 2-254 (363)
44 cd02115 AAK Amino Acid Kinases 99.9 3E-26 6.5E-31 249.1 17.7 208 613-821 12-248 (248)
45 cd04261 AAK_AKii-LysC-BS AAK_A 99.9 3.8E-26 8.3E-31 245.8 17.6 201 612-822 13-239 (239)
46 cd04246 AAK_AK-DapG-like AAK_A 99.9 3.8E-26 8.3E-31 245.9 16.8 201 612-822 13-239 (239)
47 COG1608 Predicted archaeal kin 99.9 1.3E-26 2.8E-31 235.0 12.1 225 593-822 4-251 (252)
48 cd04241 AAK_FomA-like AAK_FomA 99.9 2.6E-26 5.7E-31 249.5 13.8 220 592-821 2-252 (252)
49 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 2.6E-25 5.6E-30 239.7 19.3 212 592-822 33-262 (262)
50 KOG1154|consensus 99.9 9.3E-26 2E-30 225.2 11.6 232 589-824 9-276 (285)
51 COG0527 LysC Aspartokinases [A 99.9 2.3E-24 5E-29 247.4 22.5 332 592-948 4-444 (447)
52 PRK08841 aspartate kinase; Val 99.9 1.3E-24 2.9E-29 247.9 19.6 215 591-824 3-243 (392)
53 cd04234 AAK_AK AAK_AK: Amino A 99.9 8.7E-25 1.9E-29 233.1 16.7 190 612-822 13-227 (227)
54 cd04235 AAK_CK AAK_CK: Carbama 99.9 6.6E-25 1.4E-29 238.6 15.7 223 592-822 2-308 (308)
55 PRK09481 sspA stringent starva 99.9 2.4E-24 5.2E-29 228.1 18.6 167 1-171 34-201 (211)
56 cd04260 AAK_AKi-DapG-BS AAK_AK 99.9 1.9E-24 4.1E-29 232.9 17.0 202 611-822 12-244 (244)
57 TIGR00746 arcC carbamate kinas 99.9 2.4E-24 5.1E-29 236.0 17.1 224 591-822 2-309 (310)
58 PRK06635 aspartate kinase; Rev 99.9 1.8E-23 3.9E-28 243.0 24.5 278 591-931 3-312 (404)
59 PRK14058 acetylglutamate/acety 99.9 4.1E-24 9E-29 233.4 15.3 200 618-823 16-267 (268)
60 TIGR00656 asp_kin_monofn aspar 99.9 6E-24 1.3E-28 246.8 17.1 203 611-823 13-243 (401)
61 COG0548 ArgB Acetylglutamate k 99.9 1.9E-23 4.1E-28 220.2 19.1 214 606-823 10-265 (265)
62 TIGR01092 P5CS delta l-pyrroli 99.9 1.6E-23 3.5E-28 256.6 19.2 235 589-827 7-279 (715)
63 PRK12454 carbamate kinase-like 99.9 2.2E-23 4.8E-28 226.0 15.8 225 591-823 4-313 (313)
64 PRK12353 putative amino acid k 99.9 2.3E-23 5.1E-28 230.5 15.7 226 590-823 3-314 (314)
65 CHL00202 argB acetylglutamate 99.9 9.3E-23 2E-27 224.0 19.1 208 612-822 37-283 (284)
66 PLN02512 acetylglutamate kinas 99.9 4.6E-23 9.9E-28 228.7 16.7 208 613-823 62-309 (309)
67 PLN02418 delta-1-pyrroline-5-c 99.9 1E-22 2.3E-27 248.8 19.4 233 589-826 15-286 (718)
68 PRK08210 aspartate kinase I; R 99.9 7.6E-23 1.6E-27 237.2 16.7 215 591-824 3-248 (403)
69 cd04244 AAK_AK-LysC-like AAK_A 99.9 1.3E-22 2.7E-27 223.6 17.4 149 665-822 125-298 (298)
70 PRK12686 carbamate kinase; Rev 99.9 1.2E-22 2.6E-27 221.1 14.6 224 591-822 4-311 (312)
71 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.9 7.4E-23 1.6E-27 225.2 13.0 218 591-821 16-279 (279)
72 PRK10542 glutathionine S-trans 99.9 1.8E-22 4E-27 212.1 14.8 168 1-171 23-196 (201)
73 PRK07431 aspartate kinase; Pro 99.9 2.5E-22 5.4E-27 243.5 18.0 214 592-824 4-245 (587)
74 PRK00942 acetylglutamate kinas 99.9 1.5E-22 3.2E-27 223.5 13.3 217 591-823 25-282 (283)
75 KOG0868|consensus 99.9 2.5E-22 5.3E-27 192.3 12.5 170 1-171 29-206 (217)
76 KOG0406|consensus 99.9 9.8E-22 2.1E-26 202.4 17.5 175 1-178 33-217 (231)
77 PLN02395 glutathione S-transfe 99.9 4.7E-22 1E-26 211.3 15.7 171 1-171 25-209 (215)
78 PRK06291 aspartate kinase; Pro 99.9 2.4E-20 5.3E-25 219.2 31.4 206 610-824 12-304 (465)
79 PLN02473 glutathione S-transfe 99.9 6E-22 1.3E-26 210.4 16.2 171 1-171 26-210 (214)
80 cd04259 AAK_AK-DapDC AAK_AK-Da 99.9 2.1E-21 4.6E-26 212.8 20.6 202 610-822 11-295 (295)
81 cd04238 AAK_NAGK-like AAK_NAGK 99.9 2.9E-22 6.2E-27 218.2 13.0 201 614-821 14-256 (256)
82 PRK13972 GSH-dependent disulfi 99.9 5.3E-22 1.1E-26 210.9 13.1 168 1-171 24-204 (215)
83 COG0625 Gst Glutathione S-tran 99.9 1.8E-21 4E-26 206.2 16.9 166 1-167 24-199 (211)
84 PRK15113 glutathione S-transfe 99.9 1E-21 2.3E-26 208.4 14.9 167 1-171 31-207 (214)
85 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.9 8E-22 1.7E-26 213.9 14.0 193 616-821 13-257 (257)
86 TIGR00657 asp_kinases aspartat 99.9 1.7E-21 3.6E-26 228.5 17.8 206 610-824 12-284 (441)
87 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.9 7.2E-22 1.6E-26 214.4 13.2 201 614-821 14-252 (252)
88 cd04245 AAK_AKiii-YclM-BS AAK_ 99.9 7.5E-21 1.6E-25 207.3 20.6 153 661-822 113-288 (288)
89 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.9 2.7E-21 5.8E-26 212.2 17.1 153 661-822 118-294 (294)
90 TIGR01262 maiA maleylacetoacet 99.9 3.2E-21 6.8E-26 204.2 15.6 170 1-171 23-203 (210)
91 PRK10357 putative glutathione 99.9 6.9E-21 1.5E-25 200.4 18.0 170 1-171 24-199 (202)
92 TIGR00862 O-ClC intracellular 99.9 6.9E-21 1.5E-25 202.0 17.5 160 1-171 34-219 (236)
93 PRK12352 putative carbamate ki 99.9 5.7E-21 1.2E-25 209.6 17.3 225 591-823 4-315 (316)
94 PRK08373 aspartate kinase; Val 99.9 7.6E-21 1.6E-25 211.1 17.9 155 659-824 103-280 (341)
95 cd04243 AAK_AK-HSDH-like AAK_A 99.9 1.4E-20 3.1E-25 206.3 19.6 153 661-822 117-293 (293)
96 PRK11752 putative S-transferas 99.8 1.4E-20 3.1E-25 205.6 17.2 169 1-171 73-257 (264)
97 cd04258 AAK_AKiii-LysC-EC AAK_ 99.8 4.2E-20 9.2E-25 201.7 19.7 157 657-822 112-292 (292)
98 PRK12354 carbamate kinase; Rev 99.8 8.8E-21 1.9E-25 205.3 13.6 224 592-824 3-301 (307)
99 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.8 1.9E-20 4.2E-25 205.2 16.5 153 662-823 127-305 (306)
100 PRK09411 carbamate kinase; Rev 99.8 3.6E-20 7.9E-25 198.6 18.1 216 599-822 9-296 (297)
101 PLN02378 glutathione S-transfe 99.8 2.3E-20 4.9E-25 197.9 16.1 161 1-176 35-202 (213)
102 cd04240 AAK_UC AAK_UC: Unchara 99.8 1.2E-20 2.6E-25 196.8 13.7 180 616-821 12-203 (203)
103 PLN02551 aspartokinase 99.8 2.1E-19 4.6E-24 211.1 25.8 155 661-824 166-349 (521)
104 PF00696 AA_kinase: Amino acid 99.8 4.3E-21 9.3E-26 207.9 9.5 185 616-801 19-242 (242)
105 TIGR02078 AspKin_pair Pyrococc 99.8 4.9E-20 1.1E-24 203.6 16.1 142 673-824 107-271 (327)
106 TIGR00761 argB acetylglutamate 99.8 2.9E-20 6.2E-25 199.4 12.5 178 616-799 15-230 (231)
107 PRK09084 aspartate kinase III; 99.8 1.8E-19 3.9E-24 210.2 20.0 157 658-824 107-290 (448)
108 PRK09034 aspartate kinase; Rev 99.8 2E-19 4.3E-24 210.4 20.3 261 661-931 113-434 (454)
109 PLN02817 glutathione dehydroge 99.8 1.3E-19 2.7E-24 196.9 16.8 157 1-171 88-250 (265)
110 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.8 1.1E-19 2.5E-24 199.0 13.9 214 590-821 19-280 (280)
111 PRK09436 thrA bifunctional asp 99.8 8.9E-18 1.9E-22 208.8 27.8 155 661-824 120-298 (819)
112 PRK05925 aspartate kinase; Pro 99.8 1.5E-18 3.2E-23 200.6 18.5 155 661-824 103-281 (440)
113 cd04252 AAK_NAGK-fArgBP AAK_NA 99.8 6.7E-19 1.5E-23 190.0 14.7 196 616-821 14-248 (248)
114 KOG0867|consensus 99.8 4.4E-19 9.6E-24 188.9 13.1 170 1-170 26-207 (226)
115 COG0549 ArcC Carbamate kinase 99.8 2.6E-18 5.7E-23 178.2 18.0 219 599-823 8-312 (312)
116 PRK05279 N-acetylglutamate syn 99.8 2.1E-18 4.6E-23 202.5 19.2 217 590-824 26-292 (441)
117 PRK09466 metL bifunctional asp 99.8 1.4E-18 3.1E-23 213.9 18.1 154 661-823 123-300 (810)
118 cd04236 AAK_NAGS-Urea AAK_NAGS 99.8 2.3E-18 5E-23 185.4 15.5 195 611-821 48-271 (271)
119 TIGR01890 N-Ac-Glu-synth amino 99.8 4.8E-18 1E-22 198.5 19.3 201 616-824 34-280 (429)
120 PRK08961 bifunctional aspartat 99.8 2.7E-18 5.8E-23 215.9 13.3 217 590-824 8-306 (861)
121 PTZ00057 glutathione s-transfe 99.8 1.1E-17 2.4E-22 176.3 15.4 160 1-171 28-198 (205)
122 PRK09181 aspartate kinase; Val 99.7 1.6E-16 3.5E-21 185.1 22.3 159 655-823 136-311 (475)
123 PRK10387 glutaredoxin 2; Provi 99.7 8E-17 1.7E-21 170.5 14.8 160 1-167 24-208 (210)
124 cd04248 AAK_AK-Ectoine AAK_AK- 99.7 1.4E-16 3E-21 171.9 15.3 159 654-822 129-304 (304)
125 KOG1695|consensus 99.7 3.1E-16 6.7E-21 161.3 13.7 168 1-171 27-199 (206)
126 PRK04531 acetylglutamate kinas 99.7 1.1E-15 2.4E-20 174.0 15.4 176 616-825 52-251 (398)
127 TIGR02182 GRXB Glutaredoxin, G 99.6 1.8E-15 3.8E-20 160.0 14.8 159 1-167 23-207 (209)
128 COG2054 Uncharacterized archae 99.6 8.1E-15 1.8E-19 141.8 15.9 173 630-823 26-210 (212)
129 KOG0456|consensus 99.6 4.7E-15 1E-19 158.3 13.4 235 609-869 160-432 (559)
130 PLN02907 glutamate-tRNA ligase 99.6 1.8E-14 3.9E-19 174.9 14.1 125 20-165 32-159 (722)
131 KOG4420|consensus 99.6 1.7E-14 3.6E-19 146.7 11.4 171 1-171 50-286 (325)
132 PLN02825 amino-acid N-acetyltr 99.5 1.6E-13 3.5E-18 160.2 20.3 202 615-824 33-365 (515)
133 KOG1422|consensus 99.4 2.2E-12 4.8E-17 128.6 13.4 165 1-176 36-208 (221)
134 COG0264 Tsf Translation elonga 99.4 4.5E-12 9.8E-17 133.8 13.4 158 350-537 72-279 (296)
135 TIGR00116 tsf translation elon 99.4 4.5E-12 9.7E-17 137.0 13.5 156 350-537 69-274 (290)
136 PF00889 EF_TS: Elongation fac 99.3 3.6E-12 7.7E-17 134.0 10.3 109 417-535 63-221 (221)
137 PRK09377 tsf elongation factor 99.3 1.2E-11 2.7E-16 133.7 14.0 155 350-537 70-274 (290)
138 cd03186 GST_C_SspA GST_N famil 99.3 1.7E-11 3.7E-16 115.0 10.5 106 60-169 1-106 (107)
139 cd03182 GST_C_GTT2_like GST_C 99.2 9.8E-11 2.1E-15 111.6 12.2 108 59-166 1-117 (117)
140 cd03196 GST_C_5 GST_C family, 99.2 5E-11 1.1E-15 113.4 9.5 111 58-169 2-114 (115)
141 cd03189 GST_C_GTT1_like GST_C 99.2 2.6E-10 5.7E-15 109.0 11.8 107 57-164 2-119 (119)
142 cd03188 GST_C_Beta GST_C famil 99.1 1.4E-10 3E-15 109.9 8.7 107 62-169 2-113 (114)
143 cd03185 GST_C_Tau GST_C family 99.1 2.7E-10 5.8E-15 110.1 10.9 107 61-171 2-114 (126)
144 cd03177 GST_C_Delta_Epsilon GS 99.1 3.5E-10 7.7E-15 108.1 8.2 105 62-170 2-110 (118)
145 cd03203 GST_C_Lambda GST_C fam 99.1 7.5E-10 1.6E-14 106.1 10.3 108 59-177 1-116 (120)
146 cd03187 GST_C_Phi GST_C family 99.1 4.6E-10 1E-14 107.0 8.8 108 62-169 2-117 (118)
147 cd03190 GST_C_ECM4_like GST_C 99.1 9E-10 2E-14 108.9 10.8 108 61-171 3-117 (142)
148 cd03191 GST_C_Zeta GST_C famil 99.0 5.3E-10 1.1E-14 107.3 8.5 110 61-171 2-118 (121)
149 cd03178 GST_C_Ure2p_like GST_C 99.0 2.2E-10 4.9E-15 108.4 5.7 109 62-170 1-112 (113)
150 cd03180 GST_C_2 GST_C family, 99.0 1.2E-09 2.7E-14 102.6 10.5 104 62-166 2-110 (110)
151 cd03183 GST_C_Theta GST_C fami 99.0 6.7E-10 1.4E-14 107.4 8.5 80 92-171 39-121 (126)
152 cd03184 GST_C_Omega GST_C fami 99.0 6.5E-10 1.4E-14 107.3 8.2 105 62-172 2-113 (124)
153 PF00043 GST_C: Glutathione S- 99.0 1.2E-09 2.6E-14 99.9 8.5 72 93-164 23-95 (95)
154 cd03061 GST_N_CLIC GST_N famil 99.0 8.7E-10 1.9E-14 98.8 6.9 53 1-53 37-89 (91)
155 CHL00098 tsf elongation factor 99.0 6.5E-10 1.4E-14 113.9 6.5 68 529-596 50-128 (200)
156 cd03208 GST_C_Alpha GST_C fami 99.0 1.6E-09 3.5E-14 106.4 8.9 109 62-171 3-114 (137)
157 cd03209 GST_C_Mu GST_C family, 99.0 2.4E-09 5.3E-14 102.8 9.4 107 62-171 2-108 (121)
158 cd03200 GST_C_JTV1 GST_C famil 99.0 2.4E-09 5.1E-14 98.2 8.7 95 43-162 1-95 (96)
159 cd03198 GST_C_CLIC GST_C famil 99.0 1.6E-09 3.5E-14 104.5 7.9 77 97-174 28-125 (134)
160 cd03201 GST_C_DHAR GST_C famil 99.0 2.9E-09 6.2E-14 102.1 9.6 74 98-171 30-109 (121)
161 COG0435 ECM4 Predicted glutath 98.9 1.2E-09 2.7E-14 113.0 7.1 144 23-171 127-285 (324)
162 cd03181 GST_C_EFB1gamma GST_C 98.9 2.1E-09 4.5E-14 103.4 8.0 110 62-171 1-115 (123)
163 cd03195 GST_C_4 GST_C family, 98.9 1.8E-09 4E-14 102.5 7.4 107 60-170 1-111 (114)
164 cd03204 GST_C_GDAP1 GST_C fami 98.9 2.9E-09 6.3E-14 99.6 7.9 75 92-166 23-111 (111)
165 cd03210 GST_C_Pi GST_C family, 98.9 6.9E-09 1.5E-13 100.4 9.1 106 62-171 3-111 (126)
166 PRK12332 tsf elongation factor 98.9 4E-09 8.7E-14 108.3 7.4 70 528-597 52-131 (198)
167 cd03206 GST_C_7 GST_C family, 98.8 6.6E-09 1.4E-13 96.1 6.7 69 97-166 32-100 (100)
168 PF13417 GST_N_3: Glutathione 98.8 9.6E-09 2.1E-13 89.7 6.3 53 1-53 22-74 (75)
169 cd03179 GST_C_1 GST_C family, 98.8 8.7E-09 1.9E-13 96.0 6.4 99 62-161 2-105 (105)
170 KOG4244|consensus 98.8 4.4E-08 9.6E-13 101.7 12.0 153 1-163 76-273 (281)
171 KOG2903|consensus 98.8 4.7E-09 1E-13 107.5 4.3 146 23-174 121-289 (319)
172 PF13410 GST_C_2: Glutathione 98.8 1.6E-08 3.5E-13 86.6 6.5 65 95-159 3-69 (69)
173 cd03194 GST_C_3 GST_C family, 98.7 3.5E-08 7.6E-13 93.6 7.9 66 101-170 44-112 (114)
174 cd03207 GST_C_8 GST_C family, 98.7 1.6E-08 3.6E-13 93.9 5.6 73 97-171 29-101 (103)
175 cd03059 GST_N_SspA GST_N famil 98.7 2.6E-08 5.7E-13 86.2 6.2 50 1-50 24-73 (73)
176 cd03052 GST_N_GDAP1 GST_N fami 98.7 2.2E-08 4.7E-13 86.9 5.7 47 1-47 24-73 (73)
177 cd03057 GST_N_Beta GST_N famil 98.7 2.9E-08 6.3E-13 87.0 5.9 51 1-51 23-77 (77)
178 cd03046 GST_N_GTT1_like GST_N 98.6 4.7E-08 1E-12 85.4 6.4 51 1-51 23-76 (76)
179 cd03050 GST_N_Theta GST_N fami 98.6 5.3E-08 1.1E-12 85.2 6.2 50 1-50 24-76 (76)
180 cd03058 GST_N_Tau GST_N family 98.6 5.8E-08 1.3E-12 84.4 6.1 50 1-50 24-74 (74)
181 cd03048 GST_N_Ure2p_like GST_N 98.6 7.1E-08 1.5E-12 85.5 6.1 51 1-51 24-80 (81)
182 PF02798 GST_N: Glutathione S- 98.6 7.9E-08 1.7E-12 84.1 6.0 48 1-48 24-76 (76)
183 cd03076 GST_N_Pi GST_N family, 98.6 5.3E-08 1.1E-12 84.5 4.4 49 1-49 25-73 (73)
184 cd03192 GST_C_Sigma_like GST_C 98.6 2E-07 4.3E-12 86.8 8.4 98 62-160 2-104 (104)
185 PF14497 GST_C_3: Glutathione 98.6 5.2E-08 1.1E-12 90.0 4.1 64 97-162 34-99 (99)
186 cd03045 GST_N_Delta_Epsilon GS 98.6 1.1E-07 2.3E-12 82.7 5.8 48 1-48 24-74 (74)
187 cd03202 GST_C_etherase_LigE GS 98.5 1.8E-07 4E-12 90.2 7.0 66 97-162 57-123 (124)
188 cd03044 GST_N_EF1Bgamma GST_N 98.5 1.5E-07 3.3E-12 82.1 5.3 48 1-48 24-74 (75)
189 cd03053 GST_N_Phi GST_N family 98.5 1.9E-07 4E-12 81.6 5.9 49 1-49 25-76 (76)
190 cd03075 GST_N_Mu GST_N family, 98.5 1.7E-07 3.6E-12 83.3 5.6 50 1-50 24-82 (82)
191 cd03060 GST_N_Omega_like GST_N 98.5 2E-07 4.3E-12 80.4 5.5 46 1-46 24-70 (71)
192 cd00299 GST_C_family Glutathio 98.5 2.3E-07 5E-12 85.0 6.1 68 93-160 31-100 (100)
193 PF13409 GST_N_2: Glutathione 98.5 2.7E-07 5.8E-12 79.3 5.7 49 1-49 17-70 (70)
194 cd03043 GST_N_1 GST_N family, 98.5 2.8E-07 6E-12 79.9 5.8 47 1-47 25-73 (73)
195 cd03047 GST_N_2 GST_N family, 98.4 3.1E-07 6.8E-12 79.6 5.7 47 1-47 24-73 (73)
196 cd03193 GST_C_Metaxin GST_C fa 98.4 1E-06 2.2E-11 79.4 8.5 64 98-161 19-88 (88)
197 cd03041 GST_N_2GST_N GST_N fam 98.4 3.4E-07 7.3E-12 80.3 5.1 50 1-50 25-77 (77)
198 cd03056 GST_N_4 GST_N family, 98.4 5.1E-07 1.1E-11 78.0 5.7 47 1-47 24-73 (73)
199 cd03049 GST_N_3 GST_N family, 98.4 3.7E-07 8.1E-12 79.1 4.8 47 1-47 26-73 (73)
200 cd03042 GST_N_Zeta GST_N famil 98.4 5.1E-07 1.1E-11 78.0 5.7 47 1-47 24-73 (73)
201 cd03039 GST_N_Sigma_like GST_N 98.4 3.1E-07 6.8E-12 79.3 4.2 48 1-48 24-72 (72)
202 cd03038 GST_N_etherase_LigE GS 98.3 5.4E-07 1.2E-11 80.5 5.2 50 1-51 31-84 (84)
203 cd03077 GST_N_Alpha GST_N fami 98.3 1.2E-06 2.6E-11 77.3 5.6 48 1-51 25-77 (79)
204 cd03055 GST_N_Omega GST_N fami 98.3 1E-06 2.2E-11 79.6 5.2 47 1-47 42-89 (89)
205 cd03051 GST_N_GTT2_like GST_N 98.2 1.8E-06 3.9E-11 74.7 5.0 47 1-47 24-74 (74)
206 cd03205 GST_C_6 GST_C family, 98.2 9.4E-06 2E-10 74.7 9.1 69 89-160 28-98 (98)
207 cd03080 GST_N_Metaxin_like GST 98.1 3.2E-06 6.9E-11 73.7 5.4 44 1-51 32-75 (75)
208 COG2999 GrxB Glutaredoxin 2 [P 98.1 3.2E-05 6.9E-10 75.5 11.5 141 22-166 44-207 (215)
209 KOG3029|consensus 98.1 2E-05 4.4E-10 82.1 10.2 61 101-162 291-354 (370)
210 KOG3027|consensus 98.0 4.3E-05 9.4E-10 76.3 11.5 141 20-162 62-247 (257)
211 KOG2436|consensus 98.0 2.9E-05 6.2E-10 88.0 10.4 147 612-758 107-288 (520)
212 cd03211 GST_C_Metaxin2 GST_C f 98.0 7.3E-06 1.6E-10 79.2 5.0 65 97-161 56-126 (126)
213 cd03037 GST_N_GRX2 GST_N famil 97.9 1.2E-05 2.7E-10 69.1 5.1 47 1-48 24-71 (71)
214 cd03212 GST_C_Metaxin1_3 GST_C 97.9 1.5E-05 3.3E-10 78.1 6.3 67 96-162 62-134 (137)
215 PF14834 GST_C_4: Glutathione 97.9 3.2E-05 6.9E-10 71.0 7.6 109 59-171 1-113 (117)
216 cd03040 GST_N_mPGES2 GST_N fam 97.9 1.2E-05 2.6E-10 70.4 4.0 48 1-50 25-76 (77)
217 cd03054 GST_N_Metaxin GST_N fa 97.8 2.7E-05 5.8E-10 67.2 5.4 42 1-49 31-72 (72)
218 cd00570 GST_N_family Glutathio 97.8 3.7E-05 8E-10 65.0 5.9 47 1-47 24-71 (71)
219 cd03197 GST_C_mPGES2 GST_C fam 97.8 3.4E-05 7.3E-10 75.5 5.9 61 101-162 82-145 (149)
220 cd03079 GST_N_Metaxin2 GST_N f 97.7 5.2E-05 1.1E-09 65.4 5.2 43 1-49 32-74 (74)
221 KOG3028|consensus 97.5 0.0023 4.9E-08 69.0 14.4 143 20-162 44-233 (313)
222 PF00627 UBA: UBA/TS-N domain; 97.4 0.00013 2.9E-09 54.0 3.4 34 392-426 4-37 (37)
223 PRK05441 murQ N-acetylmuramic 96.9 0.036 7.8E-07 61.8 17.2 195 210-429 41-274 (299)
224 PRK12570 N-acetylmuramic acid- 96.6 0.086 1.9E-06 58.7 17.4 193 211-428 38-269 (296)
225 cd05007 SIS_Etherase N-acetylm 96.2 0.052 1.1E-06 59.2 12.8 189 210-423 28-255 (257)
226 TIGR00274 N-acetylmuramic acid 95.8 0.38 8.1E-06 53.4 17.4 192 209-429 35-269 (291)
227 cd03078 GST_N_Metaxin1_like GS 95.6 0.024 5.2E-07 49.0 5.6 30 20-49 43-72 (73)
228 PRK06369 nac nascent polypepti 95.4 0.013 2.7E-07 54.6 3.1 72 349-428 43-114 (115)
229 KOG1147|consensus 95.3 0.0023 5.1E-08 72.8 -2.4 104 32-158 44-150 (712)
230 TIGR00264 alpha-NAC-related pr 95.0 0.017 3.6E-07 53.6 2.8 74 345-428 43-116 (116)
231 smart00165 UBA Ubiquitin assoc 94.8 0.031 6.8E-07 41.2 3.2 26 401-426 11-36 (37)
232 KOG1071|consensus 94.7 0.012 2.6E-07 63.4 1.2 109 418-535 192-332 (340)
233 cd00194 UBA Ubiquitin Associat 94.7 0.034 7.4E-07 41.3 3.2 32 395-427 6-37 (38)
234 PF04399 Glutaredoxin2_C: Glut 94.6 0.066 1.4E-06 51.7 5.6 66 97-166 58-124 (132)
235 cd03199 GST_C_GRX2 GST_C famil 94.1 0.28 6.1E-06 47.0 8.7 65 98-166 60-125 (128)
236 TIGR02190 GlrX-dom Glutaredoxi 93.3 0.1 2.3E-06 45.7 4.1 47 1-47 33-79 (79)
237 cd03029 GRX_hybridPRX5 Glutare 88.6 0.74 1.6E-05 39.3 4.7 47 1-47 26-72 (72)
238 PRK10638 glutaredoxin 3; Provi 87.5 0.72 1.6E-05 40.8 4.0 47 1-47 27-74 (83)
239 PRK00414 gmhA phosphoheptose i 87.5 15 0.00033 38.1 14.5 128 213-371 26-164 (192)
240 TIGR03127 RuMP_HxlB 6-phospho 86.0 8.2 0.00018 39.5 11.5 38 323-360 71-112 (179)
241 PF10568 Tom37: Outer mitochon 85.4 0.92 2E-05 39.1 3.4 27 20-46 44-71 (72)
242 PF13580 SIS_2: SIS domain; PD 84.4 14 0.00031 36.1 11.8 115 214-354 18-137 (138)
243 COG2103 Predicted sugar phosph 83.1 33 0.00072 37.0 14.2 196 208-428 37-271 (298)
244 TIGR02196 GlrX_YruB Glutaredox 82.1 1.9 4.1E-05 36.3 4.1 46 1-46 25-73 (74)
245 COG1308 EGD2 Transcription fac 81.2 1.5 3.2E-05 41.2 3.2 34 394-427 88-121 (122)
246 PF14555 UBA_4: UBA-like domai 80.8 1.6 3.6E-05 33.3 2.8 36 393-428 3-38 (43)
247 cd05006 SIS_GmhA Phosphoheptos 80.4 27 0.00059 35.6 12.7 51 323-373 100-158 (177)
248 PRK10886 DnaA initiator-associ 80.3 29 0.00062 36.2 12.8 116 214-357 24-146 (196)
249 PRK13936 phosphoheptose isomer 78.7 21 0.00046 37.2 11.3 36 323-358 110-149 (197)
250 PRK11557 putative DNA-binding 76.8 41 0.00088 37.0 13.7 46 323-368 174-225 (278)
251 PRK13938 phosphoheptose isomer 76.8 49 0.0011 34.5 13.3 133 211-371 25-166 (196)
252 cd02976 NrdH NrdH-redoxin (Nrd 76.0 2.5 5.5E-05 35.4 3.0 38 1-38 25-63 (73)
253 PF03943 TAP_C: TAP C-terminal 75.3 1.8 3.9E-05 34.5 1.7 37 393-429 3-39 (51)
254 PF10087 DUF2325: Uncharacteri 75.0 11 0.00025 34.3 7.2 29 233-261 1-29 (97)
255 PRK10892 D-arabinose 5-phospha 74.8 56 0.0012 36.9 14.4 37 324-360 94-134 (326)
256 cd02066 GRX_family Glutaredoxi 74.6 4.3 9.2E-05 33.8 4.0 45 1-45 25-70 (72)
257 PRK02947 hypothetical protein; 72.1 47 0.001 36.0 12.2 31 214-244 23-53 (246)
258 cd05005 SIS_PHI Hexulose-6-pho 70.9 28 0.00061 35.5 9.8 48 324-371 75-130 (179)
259 PRK15482 transcriptional regul 70.9 61 0.0013 35.8 13.2 45 324-368 182-232 (285)
260 COG0279 GmhA Phosphoheptose is 69.1 1.3E+02 0.0029 30.3 14.6 136 211-373 21-166 (176)
261 smart00804 TAP_C C-terminal do 68.8 6.6 0.00014 32.8 3.6 37 392-428 14-50 (63)
262 PF02845 CUE: CUE domain; Int 68.7 6.8 0.00015 29.7 3.4 36 393-428 4-40 (42)
263 PRK15408 autoinducer 2-binding 68.3 2E+02 0.0043 32.7 16.9 44 323-367 79-124 (336)
264 TIGR00441 gmhA phosphoheptose 63.1 1.4E+02 0.0029 29.7 12.6 49 323-371 78-132 (154)
265 PRK08674 bifunctional phosphog 61.8 64 0.0014 36.7 11.3 63 324-387 78-151 (337)
266 cd03027 GRX_DEP Glutaredoxin ( 61.3 11 0.00024 32.2 3.8 43 1-43 26-69 (73)
267 PRK13937 phosphoheptose isomer 60.6 1.2E+02 0.0027 31.2 12.3 30 214-243 21-50 (188)
268 cd06295 PBP1_CelR Ligand bindi 58.9 18 0.00039 39.3 6.0 47 323-370 63-109 (275)
269 PF12685 SpoIIIAH: SpoIIIAH-li 58.2 37 0.0008 35.4 7.8 62 944-1005 84-147 (196)
270 PRK11070 ssDNA exonuclease Rec 57.5 87 0.0019 38.4 11.9 104 209-357 48-160 (575)
271 PRK08006 replicative DNA helic 57.0 95 0.0021 37.1 12.0 162 192-371 212-400 (471)
272 PRK10329 glutaredoxin-like pro 56.7 11 0.00025 33.1 3.2 37 1-37 26-62 (81)
273 COG1778 Low specificity phosph 56.3 12 0.00026 37.1 3.5 54 746-810 12-67 (170)
274 PF13433 Peripla_BP_5: Peripla 56.3 35 0.00075 39.0 7.6 48 230-278 132-185 (363)
275 TIGR02183 GRXA Glutaredoxin, G 56.2 20 0.00044 31.8 4.7 50 2-51 31-83 (86)
276 cd05009 SIS_GlmS_GlmD_2 SIS (S 56.2 94 0.002 30.3 10.2 67 323-389 60-135 (153)
277 PF12732 YtxH: YtxH-like prote 55.8 82 0.0018 27.1 8.3 33 929-961 20-52 (74)
278 PF11287 DUF3088: Protein of u 55.3 20 0.00044 33.4 4.5 48 4-51 45-108 (112)
279 PF08938 HBS1_N: HBS1 N-termin 54.9 5.9 0.00013 34.8 1.0 34 404-437 45-78 (79)
280 PRK11337 DNA-binding transcrip 54.8 1.7E+02 0.0037 32.4 13.0 48 323-370 186-241 (292)
281 PF11801 Tom37_C: Tom37 C-term 54.3 23 0.00049 36.0 5.3 51 103-157 113-167 (168)
282 PRK11200 grxA glutaredoxin 1; 53.7 22 0.00049 31.2 4.7 51 1-51 31-84 (85)
283 PF09635 MetRS-N: MetRS-N bind 53.6 9.9 0.00022 36.0 2.3 34 19-52 29-64 (122)
284 PF04007 DUF354: Protein of un 53.5 1.1E+02 0.0023 35.0 11.0 109 208-358 5-114 (335)
285 PRK06904 replicative DNA helic 53.3 92 0.002 37.3 11.1 152 194-362 211-389 (472)
286 PRK11302 DNA-binding transcrip 52.7 1.1E+02 0.0023 33.7 10.9 46 324-369 175-225 (284)
287 PRK11543 gutQ D-arabinose 5-ph 52.5 2.7E+02 0.0059 31.2 14.4 38 323-360 88-129 (321)
288 PF13528 Glyco_trans_1_3: Glyc 52.2 71 0.0015 35.6 9.6 114 216-360 14-127 (318)
289 PRK07004 replicative DNA helic 52.0 94 0.002 37.1 10.8 147 197-361 206-378 (460)
290 TIGR02200 GlrX_actino Glutared 51.3 10 0.00022 32.3 2.0 46 1-46 25-75 (77)
291 PRK08506 replicative DNA helic 51.1 1.1E+02 0.0025 36.5 11.4 134 209-361 202-356 (472)
292 PRK11382 frlB fructoselysine-6 51.1 1.4E+02 0.0029 34.1 11.6 94 324-424 92-192 (340)
293 PTZ00295 glucosamine-fructose- 51.0 1.1E+02 0.0023 38.3 11.6 47 324-370 369-421 (640)
294 TIGR02181 GRX_bact Glutaredoxi 51.0 22 0.00047 30.7 4.0 48 1-48 24-72 (79)
295 PRK08840 replicative DNA helic 50.9 1.3E+02 0.0027 36.0 11.6 159 194-370 207-392 (464)
296 cd03418 GRX_GRXb_1_3_like Glut 50.7 22 0.00048 30.2 4.0 47 1-47 25-73 (75)
297 cd05710 SIS_1 A subgroup of th 48.5 40 0.00088 31.9 5.8 49 324-372 47-101 (120)
298 PF04413 Glycos_transf_N: 3-De 47.4 82 0.0018 32.5 8.3 30 324-353 95-124 (186)
299 CHL00118 atpG ATP synthase CF0 47.4 94 0.002 31.1 8.5 75 935-1009 52-127 (156)
300 PRK10780 periplasmic chaperone 47.1 1.8E+02 0.0039 29.4 10.5 89 922-1010 24-118 (165)
301 smart00546 CUE Domain that may 46.9 26 0.00057 26.6 3.4 36 393-428 5-41 (43)
302 PF08285 DPM3: Dolichol-phosph 46.1 10 0.00023 34.2 1.2 28 404-431 62-89 (91)
303 PRK01919 tatB sec-independent 44.8 1.9E+02 0.004 29.3 9.7 67 934-1009 22-88 (169)
304 cd06294 PBP1_ycjW_transcriptio 44.1 51 0.0011 35.4 6.6 58 324-385 60-118 (270)
305 TIGR02726 phenyl_P_delta pheny 41.9 35 0.00075 34.7 4.4 59 746-814 11-70 (169)
306 PLN02372 violaxanthin de-epoxi 41.8 1.1E+02 0.0024 35.1 8.4 72 897-968 327-405 (455)
307 PRK14101 bifunctional glucokin 41.8 2.2E+02 0.0047 35.6 12.3 47 324-370 515-566 (638)
308 cd03419 GRX_GRXh_1_2_like Glut 41.6 55 0.0012 28.1 5.2 48 1-48 25-76 (82)
309 PRK00331 glucosamine--fructose 41.0 61 0.0013 40.1 7.3 97 323-424 335-446 (604)
310 PRK13454 F0F1 ATP synthase sub 40.4 1.3E+02 0.0028 30.9 8.4 25 944-968 81-105 (181)
311 TIGR01470 cysG_Nterm siroheme 40.2 89 0.0019 32.8 7.3 26 230-256 8-33 (205)
312 KOG0100|consensus 39.6 2.6E+02 0.0056 32.1 10.8 116 875-991 451-609 (663)
313 cd06278 PBP1_LacI_like_2 Ligan 39.5 55 0.0012 35.0 5.9 60 323-386 53-112 (266)
314 PRK09165 replicative DNA helic 39.3 3.2E+02 0.007 32.9 12.8 162 195-372 208-408 (497)
315 cd05013 SIS_RpiR RpiR-like pro 38.6 72 0.0016 30.3 6.0 47 324-370 60-112 (139)
316 TIGR02919 accessory Sec system 38.4 2.8E+02 0.0061 32.9 11.8 47 325-371 348-397 (438)
317 PF03480 SBP_bac_7: Bacterial 38.3 1.3E+02 0.0028 33.1 8.8 63 932-997 219-285 (286)
318 PF09851 SHOCT: Short C-termin 38.2 44 0.00096 23.6 3.1 26 962-987 4-29 (31)
319 cd06271 PBP1_AglR_RafR_like Li 38.0 61 0.0013 34.7 6.0 57 324-384 59-115 (268)
320 PRK13461 F0F1 ATP synthase sub 37.9 1.6E+02 0.0035 29.4 8.5 63 947-1009 47-110 (159)
321 PF10740 DUF2529: Protein of u 37.9 1.6E+02 0.0035 29.9 8.2 89 215-354 22-115 (172)
322 TIGR03590 PseG pseudaminic aci 37.2 4.6E+02 0.0099 28.8 12.8 48 324-371 80-127 (279)
323 PF13407 Peripla_BP_4: Peripla 36.6 2.6E+02 0.0057 29.6 10.7 63 324-390 55-121 (257)
324 cd06299 PBP1_LacI_like_13 Liga 36.5 72 0.0016 34.1 6.3 45 323-368 54-98 (265)
325 PRK08475 F0F1 ATP synthase sub 36.5 1.7E+02 0.0038 29.5 8.5 73 936-1008 53-126 (167)
326 PRK05759 F0F1 ATP synthase sub 35.8 1.8E+02 0.0039 28.8 8.5 32 978-1009 78-109 (156)
327 PRK13455 F0F1 ATP synthase sub 35.6 1.7E+02 0.0037 30.1 8.5 75 935-1009 57-132 (184)
328 PRK07353 F0F1 ATP synthase sub 35.6 1.9E+02 0.0041 28.1 8.5 62 948-1009 48-110 (140)
329 PRK13608 diacylglycerol glucos 35.5 1.2E+02 0.0026 35.2 8.2 34 323-357 103-136 (391)
330 PRK08404 V-type ATP synthase s 35.4 2.3E+02 0.005 26.2 8.3 58 939-1006 3-60 (103)
331 cd06283 PBP1_RegR_EndR_KdgR_li 35.2 80 0.0017 33.7 6.4 59 323-385 54-112 (267)
332 TIGR00661 MJ1255 conserved hyp 35.2 2.6E+02 0.0057 31.3 10.7 30 324-356 93-122 (321)
333 PRK14472 F0F1 ATP synthase sub 35.1 1.8E+02 0.0039 29.6 8.5 50 950-1009 74-123 (175)
334 COG0707 MurG UDP-N-acetylgluco 35.0 1.2E+02 0.0026 34.9 7.8 112 216-361 13-127 (357)
335 TIGR01135 glmS glucosamine--fr 35.0 1E+02 0.0023 38.1 8.0 48 323-370 337-390 (607)
336 PRK06749 replicative DNA helic 34.9 2.8E+02 0.006 32.8 11.1 158 197-372 179-365 (428)
337 PF06518 DUF1104: Protein of u 34.5 1.5E+02 0.0032 27.0 6.7 59 934-998 24-83 (93)
338 cd06270 PBP1_GalS_like Ligand 34.3 67 0.0015 34.5 5.6 60 323-386 54-113 (268)
339 PF11814 DUF3335: Peptidase_C3 34.1 90 0.002 32.7 5.9 65 674-760 102-168 (207)
340 cd05008 SIS_GlmS_GlmD_1 SIS (S 34.0 53 0.0011 31.1 4.1 38 323-360 45-86 (126)
341 PRK14473 F0F1 ATP synthase sub 33.9 2E+02 0.0043 28.9 8.5 27 982-1008 86-112 (164)
342 PRK13460 F0F1 ATP synthase sub 33.6 2E+02 0.0043 29.3 8.5 29 981-1009 93-121 (173)
343 PRK14475 F0F1 ATP synthase sub 33.6 2E+02 0.0044 29.0 8.5 75 935-1009 40-115 (167)
344 COG1879 RbsB ABC-type sugar tr 33.6 1.2E+02 0.0026 33.9 7.7 62 323-388 90-155 (322)
345 COG4008 Predicted metal-bindin 33.5 60 0.0013 30.6 4.0 28 402-430 125-152 (153)
346 cd05014 SIS_Kpsf KpsF-like pro 33.0 77 0.0017 30.0 5.1 46 323-368 46-97 (128)
347 PRK06231 F0F1 ATP synthase sub 32.9 2E+02 0.0043 30.2 8.5 20 981-1000 136-155 (205)
348 TIGR02637 RhaS rhamnose ABC tr 32.8 1.6E+02 0.0035 32.4 8.5 34 323-357 55-90 (302)
349 PF01380 SIS: SIS domain SIS d 32.8 51 0.0011 31.2 3.8 49 325-373 54-110 (131)
350 PRK05892 nucleoside diphosphat 32.8 2.3E+02 0.005 28.5 8.5 68 930-1005 6-73 (158)
351 COG4069 Uncharacterized protei 32.6 43 0.00093 36.4 3.4 36 324-359 266-301 (367)
352 PRK07352 F0F1 ATP synthase sub 32.6 2.1E+02 0.0046 29.1 8.5 76 933-1009 48-124 (174)
353 PF07442 Ponericin: Ponericin; 32.4 39 0.00086 22.8 1.9 17 419-435 6-24 (29)
354 TIGR02180 GRX_euk Glutaredoxin 32.1 1.1E+02 0.0024 26.3 5.6 46 3-48 28-77 (84)
355 PF00462 Glutaredoxin: Glutare 32.1 23 0.0005 28.8 1.1 36 1-36 24-60 (60)
356 cd06274 PBP1_FruR Ligand bindi 32.1 1.1E+02 0.0024 32.7 6.8 60 323-386 54-113 (264)
357 cd06273 PBP1_GntR_like_1 This 32.1 75 0.0016 34.1 5.5 59 324-386 55-113 (268)
358 PRK05595 replicative DNA helic 32.1 3.4E+02 0.0073 32.2 11.3 150 193-361 190-365 (444)
359 PRK01158 phosphoglycolate phos 31.9 57 0.0012 34.4 4.4 28 785-812 27-54 (230)
360 cd05017 SIS_PGI_PMI_1 The memb 31.8 49 0.0011 31.2 3.4 53 323-376 42-105 (119)
361 PRK09174 F0F1 ATP synthase sub 31.8 2.2E+02 0.0047 30.0 8.5 61 946-1006 105-166 (204)
362 cd06267 PBP1_LacI_sugar_bindin 31.7 1.1E+02 0.0023 32.4 6.7 59 323-385 54-112 (264)
363 PRK05748 replicative DNA helic 31.6 3.4E+02 0.0073 32.2 11.3 68 209-281 213-283 (448)
364 COG0695 GrxC Glutaredoxin and 30.9 73 0.0016 27.9 4.1 45 1-45 26-73 (80)
365 COG1648 CysG Siroheme synthase 30.8 5.2E+02 0.011 27.3 11.2 104 230-370 11-116 (210)
366 PTZ00394 glucosamine-fructose- 30.7 1.2E+02 0.0025 38.2 7.3 100 324-429 401-515 (670)
367 PRK14471 F0F1 ATP synthase sub 30.6 2.4E+02 0.0053 28.3 8.5 25 984-1008 88-112 (164)
368 PRK06569 F0F1 ATP synthase sub 30.5 4.7E+02 0.01 26.2 10.1 54 944-1003 67-120 (155)
369 PRK13453 F0F1 ATP synthase sub 30.2 2.5E+02 0.0053 28.6 8.5 21 948-968 72-92 (173)
370 PF00430 ATP-synt_B: ATP synth 29.9 1.7E+02 0.0038 27.8 7.1 71 938-1008 43-114 (132)
371 PRK05412 putative nucleotide-b 29.6 46 0.001 33.2 2.8 83 833-929 49-132 (161)
372 PRK10976 putative hydrolase; P 29.5 68 0.0015 34.9 4.6 29 785-813 26-54 (266)
373 PRK13428 F0F1 ATP synthase sub 29.3 1.9E+02 0.0041 34.3 8.5 74 936-1009 32-106 (445)
374 cd06320 PBP1_allose_binding Pe 28.9 2.8E+02 0.0061 29.8 9.4 60 324-387 57-118 (275)
375 PRK06568 F0F1 ATP synthase sub 28.8 3.1E+02 0.0066 27.5 8.5 53 944-1006 54-106 (154)
376 PTZ00174 phosphomannomutase; P 28.8 70 0.0015 34.5 4.5 29 785-813 29-57 (247)
377 COG3707 AmiR Response regulato 28.7 1.9E+02 0.004 30.0 7.0 107 323-431 49-174 (194)
378 TIGR00587 nfo apurinic endonuc 28.6 1.7E+02 0.0037 32.1 7.6 74 880-953 26-99 (274)
379 CHL00019 atpF ATP synthase CF0 28.6 2.7E+02 0.0058 28.6 8.5 25 983-1007 103-127 (184)
380 PRK12446 undecaprenyldiphospho 28.5 2.7E+02 0.0058 31.9 9.4 34 324-358 91-124 (352)
381 cd06314 PBP1_tmGBP Periplasmic 28.5 2.4E+02 0.0052 30.3 8.8 61 323-388 54-117 (271)
382 TIGR00215 lpxB lipid-A-disacch 28.4 2.1E+02 0.0046 33.2 8.6 31 324-354 89-120 (385)
383 cd06306 PBP1_TorT-like TorT-li 28.3 1.2E+02 0.0026 32.8 6.3 63 323-388 56-119 (268)
384 PF03938 OmpH: Outer membrane 28.2 4.4E+02 0.0095 26.0 9.9 79 922-1000 17-98 (158)
385 cd06300 PBP1_ABC_sugar_binding 28.2 1E+02 0.0022 33.2 5.7 46 324-370 60-107 (272)
386 PRK01021 lpxB lipid-A-disaccha 28.2 1.3E+02 0.0027 37.0 6.7 45 304-353 295-342 (608)
387 COG0800 Eda 2-keto-3-deoxy-6-p 28.0 4.8E+02 0.01 27.5 10.1 84 218-351 25-110 (211)
388 TIGR01144 ATP_synt_b ATP synth 28.0 3E+02 0.0065 26.9 8.5 29 981-1009 72-100 (147)
389 PRK05636 replicative DNA helic 27.9 4.7E+02 0.01 31.6 11.6 75 192-271 253-333 (505)
390 TIGR02194 GlrX_NrdH Glutaredox 27.9 48 0.001 28.1 2.4 34 1-34 24-57 (72)
391 PF01497 Peripla_BP_2: Peripla 27.8 1.4E+02 0.0031 31.4 6.6 36 324-359 60-95 (238)
392 PRK13454 F0F1 ATP synthase sub 27.7 2.9E+02 0.0062 28.4 8.5 75 935-1009 61-136 (181)
393 TIGR03088 stp2 sugar transfera 27.7 7.1E+02 0.015 28.1 12.9 25 337-362 286-310 (374)
394 PF03179 V-ATPase_G: Vacuolar 27.5 2.5E+02 0.0055 25.8 7.4 66 936-1007 26-91 (105)
395 PF03449 GreA_GreB_N: Transcri 27.4 4.1E+02 0.0089 23.0 8.7 66 932-1004 6-71 (74)
396 PF06972 DUF1296: Protein of u 27.2 82 0.0018 25.9 3.3 38 393-430 8-46 (60)
397 cd06279 PBP1_LacI_like_3 Ligan 27.1 1.1E+02 0.0024 33.3 5.8 59 323-386 55-113 (283)
398 PF07946 DUF1682: Protein of u 27.1 1.8E+02 0.0039 32.9 7.5 52 936-987 263-314 (321)
399 PRK10530 pyridoxal phosphate ( 27.0 81 0.0017 34.3 4.7 29 785-813 27-55 (272)
400 PRK09174 F0F1 ATP synthase sub 27.0 4.9E+02 0.011 27.4 10.1 75 935-1009 83-158 (204)
401 PRK08476 F0F1 ATP synthase sub 26.8 3.4E+02 0.0073 26.6 8.5 10 953-962 66-75 (141)
402 cd06318 PBP1_ABC_sugar_binding 26.7 1.1E+02 0.0024 33.1 5.7 58 323-384 54-115 (282)
403 TIGR01487 SPP-like sucrose-pho 26.6 83 0.0018 33.0 4.5 28 785-812 25-52 (215)
404 TIGR03600 phage_DnaB phage rep 26.3 4.6E+02 0.0099 30.8 11.1 57 209-270 204-261 (421)
405 cd06325 PBP1_ABC_uncharacteriz 26.2 3.1E+02 0.0067 29.4 9.2 59 325-383 185-248 (281)
406 cd06302 PBP1_LsrB_Quorum_Sensi 26.2 3.6E+02 0.0078 29.6 9.8 63 323-387 55-119 (298)
407 PRK14089 ipid-A-disaccharide s 25.9 85 0.0018 35.9 4.6 32 323-354 75-109 (347)
408 PRK05718 keto-hydroxyglutarate 25.9 4.9E+02 0.011 27.5 10.0 84 218-351 27-112 (212)
409 TIGR01461 greB transcription e 25.7 3.1E+02 0.0068 27.4 8.1 68 930-1004 3-70 (156)
410 cd03028 GRX_PICOT_like Glutare 25.7 1E+02 0.0022 27.5 4.2 46 1-46 38-84 (90)
411 PF05008 V-SNARE: Vesicle tran 25.4 2.4E+02 0.0052 24.3 6.5 34 929-962 15-48 (79)
412 PF13801 Metal_resist: Heavy-m 25.4 5.3E+02 0.011 23.6 11.5 70 930-1003 40-112 (125)
413 cd06305 PBP1_methylthioribose_ 25.3 1E+02 0.0022 33.1 5.0 59 324-386 55-115 (273)
414 PRK06771 hypothetical protein; 25.2 42 0.00091 30.2 1.5 30 384-413 62-91 (93)
415 PLN02335 anthranilate synthase 25.1 1.8E+02 0.0038 31.0 6.6 37 227-263 14-50 (222)
416 CHL00118 atpG ATP synthase CF0 25.0 3.1E+02 0.0067 27.3 8.0 70 940-1009 68-138 (156)
417 cd01149 HutB Hemin binding pro 25.0 1.6E+02 0.0034 31.3 6.3 30 324-353 58-87 (235)
418 PF06925 MGDG_synth: Monogalac 25.0 1.5E+02 0.0031 29.9 5.7 35 323-357 88-127 (169)
419 PRK06552 keto-hydroxyglutarate 24.9 5.5E+02 0.012 27.1 10.2 93 218-357 25-119 (213)
420 cd06292 PBP1_LacI_like_10 Liga 24.9 98 0.0021 33.3 4.8 60 323-386 54-119 (273)
421 PRK10513 sugar phosphate phosp 24.9 89 0.0019 34.0 4.5 29 785-813 27-55 (270)
422 cd06308 PBP1_sensor_kinase_lik 24.7 1.8E+02 0.004 31.2 6.9 59 324-386 56-117 (270)
423 KOG1664|consensus 24.6 2.7E+02 0.0058 29.0 7.2 54 951-1010 10-63 (220)
424 PRK14474 F0F1 ATP synthase sub 24.6 3.2E+02 0.0069 29.7 8.5 28 981-1008 82-109 (250)
425 PF02684 LpxB: Lipid-A-disacch 24.5 1.6E+02 0.0034 34.1 6.5 29 322-350 80-109 (373)
426 PRK05562 precorrin-2 dehydroge 24.5 1.7E+02 0.0038 31.1 6.3 41 325-369 86-128 (223)
427 cd06289 PBP1_MalI_like Ligand- 24.4 1.3E+02 0.0028 32.1 5.7 58 323-384 54-112 (268)
428 TIGR00315 cdhB CO dehydrogenas 24.3 7.5E+02 0.016 25.0 10.6 33 231-263 28-63 (162)
429 cd06301 PBP1_rhizopine_binding 24.1 4.7E+02 0.01 27.8 10.1 44 324-368 56-103 (272)
430 KOG0225|consensus 24.0 1.3E+02 0.0028 33.7 5.2 58 930-1000 297-355 (394)
431 PRK06774 para-aminobenzoate sy 23.8 2.4E+02 0.0051 29.1 7.1 30 324-354 43-79 (191)
432 COG1519 KdtA 3-deoxy-D-manno-o 23.7 3.1E+02 0.0067 32.0 8.4 29 324-352 123-151 (419)
433 cd06317 PBP1_ABC_sugar_binding 23.7 1.7E+02 0.0036 31.4 6.3 34 324-358 56-91 (275)
434 COG1437 CyaB Adenylate cyclase 23.6 90 0.0019 31.9 3.7 67 402-468 68-141 (178)
435 TIGR00644 recJ single-stranded 23.5 6.4E+02 0.014 30.8 11.8 97 215-355 38-142 (539)
436 PF03474 DMA: DMRTA motif; In 23.5 67 0.0015 24.1 2.0 21 406-426 18-38 (39)
437 PRK09173 F0F1 ATP synthase sub 23.4 3.9E+02 0.0084 26.6 8.4 22 946-967 54-75 (159)
438 PRK05670 anthranilate synthase 23.3 1.8E+02 0.0039 29.9 6.1 30 234-263 2-31 (189)
439 PF00244 14-3-3: 14-3-3 protei 23.2 1.6E+02 0.0034 31.7 5.9 72 930-1001 32-104 (236)
440 PRK07765 para-aminobenzoate sy 22.9 3.6E+02 0.0078 28.4 8.4 31 324-354 46-83 (214)
441 cd06307 PBP1_uncharacterized_s 22.7 2.1E+02 0.0046 30.8 7.0 60 324-387 58-120 (275)
442 COG1638 DctP TRAP-type C4-dica 22.6 4.3E+02 0.0093 30.1 9.4 94 898-997 217-314 (332)
443 TIGR01441 GPR GPR endopeptidas 22.6 61 0.0013 36.5 2.5 83 323-416 173-281 (358)
444 TIGR03321 alt_F1F0_F0_B altern 22.5 3.6E+02 0.0078 29.1 8.5 25 983-1007 84-108 (246)
445 cd06277 PBP1_LacI_like_1 Ligan 22.5 1.7E+02 0.0036 31.4 6.0 57 323-384 57-113 (268)
446 cd06285 PBP1_LacI_like_7 Ligan 22.5 3.3E+02 0.0072 29.0 8.4 58 323-386 54-111 (265)
447 PF03437 BtpA: BtpA family; I 22.2 2.5E+02 0.0054 30.6 7.0 80 735-824 134-233 (254)
448 TIGR02302 aProt_lowcomp conser 22.2 3.5E+02 0.0077 34.7 9.3 70 932-1003 474-548 (851)
449 CHL00198 accA acetyl-CoA carbo 22.0 1.1E+02 0.0024 34.4 4.4 129 206-358 7-165 (322)
450 PRK14472 F0F1 ATP synthase sub 21.9 4.3E+02 0.0093 26.8 8.5 24 944-967 75-98 (175)
451 PF04461 DUF520: Protein of un 21.9 53 0.0011 32.8 1.6 83 833-929 49-132 (160)
452 PF15605 Toxin_52: Putative to 21.7 3.5E+02 0.0077 24.9 6.6 49 950-1003 54-102 (103)
453 PRK07114 keto-hydroxyglutarate 21.6 5.4E+02 0.012 27.4 9.3 92 219-356 28-121 (222)
454 TIGR02189 GlrX-like_plant Glut 21.2 1.6E+02 0.0035 26.9 4.7 45 1-45 33-81 (99)
455 TIGR02634 xylF D-xylose ABC tr 21.2 1.9E+02 0.004 32.1 6.2 60 323-386 53-115 (302)
456 PRK02858 germination protease; 21.1 71 0.0015 36.1 2.6 57 323-388 183-265 (369)
457 cd06298 PBP1_CcpA_like Ligand- 21.0 1.8E+02 0.0038 31.1 5.9 59 324-386 55-113 (268)
458 PRK11148 cyclic 3',5'-adenosin 20.8 1.3E+02 0.0029 32.9 4.9 41 320-374 51-98 (275)
459 COG0825 AccA Acetyl-CoA carbox 20.8 69 0.0015 35.1 2.4 18 341-358 144-161 (317)
460 PRK13453 F0F1 ATP synthase sub 20.6 4.8E+02 0.011 26.4 8.5 74 936-1009 49-123 (173)
461 cd06296 PBP1_CatR_like Ligand- 20.5 1.6E+02 0.0035 31.5 5.4 58 323-384 54-112 (270)
462 PRK00025 lpxB lipid-A-disaccha 20.4 3.3E+02 0.0071 31.1 8.3 30 324-353 85-115 (380)
463 PF02421 FeoB_N: Ferrous iron 20.3 2.8E+02 0.0061 27.8 6.5 104 233-355 2-113 (156)
464 PTZ00372 endonuclease 4-like p 20.3 2.1E+02 0.0045 33.5 6.3 72 880-952 156-228 (413)
465 PF03179 V-ATPase_G: Vacuolar 20.2 6.8E+02 0.015 23.0 10.3 18 954-971 30-47 (105)
466 TIGR01481 ccpA catabolite cont 20.2 7.2E+02 0.016 27.5 10.8 125 220-384 164-306 (329)
467 TIGR02417 fruct_sucro_rep D-fr 20.0 1.5E+02 0.0032 33.1 5.1 46 324-370 116-162 (327)
No 1
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-73 Score=576.56 Aligned_cols=224 Identities=49% Similarity=0.828 Sum_probs=220.5
Q ss_pred ccchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHH
Q psy3752 169 SLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA 248 (1012)
Q Consensus 169 ~lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~ 248 (1012)
.++ +++|+++|+||||++++|||+|++|||+.|||+|||||.+|+.+|+.|+++++.++.+||+|||||||++++++|+
T Consensus 3 ~vs-m~~lLeAGvHfGhqtr~wnpkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~ 81 (252)
T COG0052 3 VVS-MKQLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVK 81 (252)
T ss_pred cCC-HHHHHHcCccccccccccCCcccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHH
Confidence 367 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEE
Q psy3752 249 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI 328 (1012)
Q Consensus 249 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~ 328 (1012)
++|++||++||++||+|||||||+||++++++|++++.+..++ |+.|||||.+.+.|+.+||+++|||||+|+++||++
T Consensus 82 ~~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~-~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l 160 (252)
T COG0052 82 EFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG-FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVL 160 (252)
T ss_pred HHHHHhCCceecCcccCccccCchhHHHHHHHHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEE
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhh
Q psy3752 329 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 394 (1012)
Q Consensus 329 iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v 394 (1012)
||+||..|++||+||+++||||||+|||||||+.||||||||||+++||.|++|+|++||++|+.-
T Consensus 161 ~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~ 226 (252)
T COG0052 161 FVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGG 226 (252)
T ss_pred EEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999863
No 2
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=100.00 E-value=2e-65 Score=555.34 Aligned_cols=221 Identities=47% Similarity=0.813 Sum_probs=218.0
Q ss_pred hhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHH
Q psy3752 173 AEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAV 252 (1012)
Q Consensus 173 ~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~ 252 (1012)
+++|+++|+||||++++|||+|++||||.|+|+|||||++|+.+|++||+||..++.+||+|||||||++++++|+++|+
T Consensus 1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~ 80 (326)
T PRK12311 1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAK 80 (326)
T ss_pred ChhHHhCCeecccCCCCCCCcccCceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeC
Q psy3752 253 RAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID 332 (1012)
Q Consensus 253 ~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~ 332 (1012)
+||++||++||+|||||||+|+++++++|++++++..++.|+.|+|||.+.+.|+.+||+++|+||++|+++||+|||+|
T Consensus 81 ~~g~~yV~~RWlgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~d 160 (326)
T PRK12311 81 RSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVID 160 (326)
T ss_pred HhCCeeeCCeecCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752 333 VGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393 (1012)
Q Consensus 333 ~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~ 393 (1012)
|..|++||+||+++||||||||||||||++|||||||||||++||+||+++|+++|++|+.
T Consensus 161 ~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~ 221 (326)
T PRK12311 161 TNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGIS 221 (326)
T ss_pred CccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 3
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=100.00 E-value=4.9e-64 Score=525.46 Aligned_cols=222 Identities=50% Similarity=0.878 Sum_probs=218.8
Q ss_pred cchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHH
Q psy3752 170 LTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN 249 (1012)
Q Consensus 170 lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~ 249 (1012)
++ +++|+++|+|+||+..+|||+|++||||.|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|++
T Consensus 2 ~~-~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~ 80 (225)
T TIGR01011 2 VS-MKDLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKE 80 (225)
T ss_pred cC-HHHHHHcCcccccccCcCCcccccceeeeeCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 45 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEE
Q psy3752 250 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF 329 (1012)
Q Consensus 250 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~i 329 (1012)
+|++||++||++||+||+||||.|+++++++|++++++..++.|+.+||||.+.+.|+++||+++|+|+++|+++||+||
T Consensus 81 ~a~~~~~~yv~~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vi 160 (225)
T TIGR01011 81 EAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLF 160 (225)
T ss_pred HHHHhCCcccCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhh
Q psy3752 330 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392 (1012)
Q Consensus 330 v~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~ 392 (1012)
|+||.+|++||+||.++||||||||||||||++|||||||||||.+|++|++++|++||.+|+
T Consensus 161 i~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~ 223 (225)
T TIGR01011 161 VIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK 223 (225)
T ss_pred EeCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 4
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=6.8e-64 Score=532.69 Aligned_cols=224 Identities=52% Similarity=0.926 Sum_probs=220.2
Q ss_pred ccchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHH
Q psy3752 169 SLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA 248 (1012)
Q Consensus 169 ~lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~ 248 (1012)
.++ +++|+++|+|+||++++|||+|++||||.|+|+|||||.+|+.+|++||++++.++++||+||||||+++++++|+
T Consensus 3 ~~~-i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~ 81 (258)
T PRK05299 3 VVS-MKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIA 81 (258)
T ss_pred cCC-HHHHHhcCcccccccCcCCCccccceecccCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHH
Confidence 355 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEE
Q psy3752 249 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI 328 (1012)
Q Consensus 249 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~ 328 (1012)
++|++||++||++||+||+||||+|+++++++|++++++..++.|+.+||||.+.+.|+++||+++|+||++|+++||+|
T Consensus 82 ~~A~~~~~~yv~~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~i 161 (258)
T PRK05299 82 EEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDAL 161 (258)
T ss_pred HHHHHhCCeeeCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752 329 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393 (1012)
Q Consensus 329 iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~ 393 (1012)
||+||..|++||+||.++||||||||||||||++|||||||||||.+||+|++++|++||++|+.
T Consensus 162 ii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~ 226 (258)
T PRK05299 162 FVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQ 226 (258)
T ss_pred EEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999985
No 5
>CHL00067 rps2 ribosomal protein S2
Probab=100.00 E-value=9.4e-62 Score=509.92 Aligned_cols=223 Identities=41% Similarity=0.711 Sum_probs=219.3
Q ss_pred ccchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHH
Q psy3752 169 SLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA 248 (1012)
Q Consensus 169 ~lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~ 248 (1012)
.++ ++.|+++|+|+||++.+|||+|++||||.|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|+
T Consensus 7 ~~~-i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v~ 85 (230)
T CHL00067 7 NIN-LEEMLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLVA 85 (230)
T ss_pred ccC-HHHHHhcCeEeccCcCcCCCchhhhhhcccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH
Confidence 456 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEE
Q psy3752 249 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI 328 (1012)
Q Consensus 249 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~ 328 (1012)
++|++||++||++||+||+||||.++++++++|+++++....+.|..++|||.+.+.|++.||+++|+||++|+++||+|
T Consensus 86 ~~a~~~~~~yv~~rWigG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~P~~i 165 (230)
T CHL00067 86 SAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIV 165 (230)
T ss_pred HHHHHhCCcCccCcccCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccCCCEE
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred EEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhh
Q psy3752 329 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392 (1012)
Q Consensus 329 iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~ 392 (1012)
||+||..|++||+||.++||||||||||||||+.|||||||||||.+|++|++++|++||.+|+
T Consensus 166 iv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~ 229 (230)
T CHL00067 166 IIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR 229 (230)
T ss_pred EEeCCcccHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 6
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-57 Score=442.88 Aligned_cols=185 Identities=47% Similarity=0.738 Sum_probs=182.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHH
Q psy3752 828 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKK 907 (1012)
Q Consensus 828 ~~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ 907 (1012)
.++.++++++++|++++++|+++|+++|||||||++||+|.|+|||.++||+|||+||+|++|+|+|+|||++++++|++
T Consensus 3 ~~~~i~~~~e~kM~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~Iek 82 (187)
T COG0233 3 MINEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEK 82 (187)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHH
Q psy3752 908 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI 987 (1012)
Q Consensus 908 ai~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~i 987 (1012)
||+.|||||||.+||++|||++|+||+|||++|+|.+|+++|++|++||||||++++++||+.|++.||||+.++++++|
T Consensus 83 aI~~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~i 162 (187)
T COG0233 83 AILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEI 162 (187)
T ss_pred HHHHcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3752 988 QKLTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus 988 q~~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
|++||+|+++||++++.||||||+|
T Consensus 163 QKlTd~yi~~iD~~~~~KEkEim~v 187 (187)
T COG0233 163 QKLTDEYIKKIDELLKDKEKEIMEV 187 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999986
No 7
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=100.00 E-value=1.9e-56 Score=467.29 Aligned_cols=211 Identities=48% Similarity=0.795 Sum_probs=201.9
Q ss_pred hhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcC
Q psy3752 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 255 (1012)
Q Consensus 176 l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~ 255 (1012)
|+++++|+||+.++|||.|.+||||.|+|+|||||++|+.+|++|+++|..+++++|+||||||+++++++|+++|+++|
T Consensus 1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~~ 80 (211)
T PF00318_consen 1 LLKAGVHLGHKKSRWNPKMKPYIYGKRNGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRTG 80 (211)
T ss_dssp HHHHTTTSCBSSSSSSGGGGGGEEEEETTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHHT
T ss_pred CcccceecCCCcCCCCCCcccceecccCceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCC
Q psy3752 256 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 335 (1012)
Q Consensus 256 ~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~ 335 (1012)
++|+++||+||+||||.++++++.+|+++++... ++||+...+.++++|++++|+|+++|+++||+||++||.+
T Consensus 81 ~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~------~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~ 154 (211)
T PF00318_consen 81 SFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFK------LTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNK 154 (211)
T ss_dssp CEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTT------SSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTT
T ss_pred CCccCceecCcccCcHHHHHHHHHHHHHHHHhhh------ccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccc
Confidence 9999999999999999999999999999877554 8999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhh
Q psy3752 336 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392 (1012)
Q Consensus 336 ~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~ 392 (1012)
|++|++||.++||||||||||||||+.|||||||||||.+|++|++++|++||++|+
T Consensus 155 ~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~ 211 (211)
T PF00318_consen 155 NKNAIREANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK 211 (211)
T ss_dssp THHHHHHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999985
No 8
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-56 Score=462.81 Aligned_cols=217 Identities=44% Similarity=0.626 Sum_probs=201.2
Q ss_pred hhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEe--CCEEEEEEEecCch
Q psy3752 389 LDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETD 466 (1012)
Q Consensus 389 ~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~--~~~~~lve~~~etd 466 (1012)
.++.+||+||++||++||||||||+|++||+|+|++|||++|+++|+||++|+++||+|.+|++ ++.|||||+|||||
T Consensus 4 ita~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETD 83 (296)
T COG0264 4 ITAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETD 83 (296)
T ss_pred ccHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEecccc
Confidence 4567899999999999999999999999999999999999999999999999999999999996 66999999999999
Q ss_pred hhhcchHHHHHHHHHHHHHHhcCCCChhHhhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCC-eeeeeccC-C
Q psy3752 467 FVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN-NLISYLHD-N 544 (1012)
Q Consensus 467 fva~~~~f~~l~~~ia~~iaa~~p~~~~~l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~-~i~~y~H~-~ 544 (1012)
|||+|+.|+.|+++|+.++++.+|.++++|...++.+ ++||++.+.+.++++||||++|||..++.+. .+++|+|+ |
T Consensus 84 FVAkN~~F~~l~~~ia~~~l~~~~~~ve~l~~~~~~~-~~tv~e~~~~~~AkIGENi~lRR~~~~~~~~~~v~~Y~H~~g 162 (296)
T COG0264 84 FVAKNAEFQELANKIAKAALEKKPADVEELKAAFEPG-GKTVEEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNG 162 (296)
T ss_pred ceeCChhHHHHHHHHHHHHHHhCcccHHHHHhhhccc-CccHHHHHHHHHHHhccceeEEEEEEeecCcccEEEEEeCCC
Confidence 9999999999999999999999999999999988865 6799999999999999999999999999877 59999999 8
Q ss_pred ceEEEEEecC--CchHHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCccc
Q psy3752 545 KIGVIVEYNG--DNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNIN 612 (1012)
Q Consensus 545 ~~g~~v~~~~--~~~~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~~~~g~~~~~~~~~~id 612 (1012)
||||||.+++ ..+++++++|||||||+|.|+++++||++++++|++++..++. ..|+|..+-
T Consensus 163 riGVlv~~~~~~~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~~------~~gKP~~i~ 226 (296)
T COG0264 163 RIGVLVALKGGAADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQLK------AEGKPENIV 226 (296)
T ss_pred cEEEEEEEeccchHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHHH------hcCChHHHH
Confidence 9999999998 5678999999999999999999999999999999998877652 236665443
No 9
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=100.00 E-value=3.8e-54 Score=444.12 Aligned_cols=193 Identities=49% Similarity=0.812 Sum_probs=186.3
Q ss_pred hhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcC
Q psy3752 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 255 (1012)
Q Consensus 176 l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~ 255 (1012)
++++|+|+||+..+|||+|++||||.|+|+|||||++|+.+|++|+++++.++.++|+||||||+++++++|+++|++||
T Consensus 1 ll~ag~h~G~~~~~wnp~m~~yiyg~r~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~ 80 (193)
T cd01425 1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG 80 (193)
T ss_pred CCccceEeCCCcCCCCccchhheecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCC
Q psy3752 256 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 335 (1012)
Q Consensus 256 ~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~ 335 (1012)
++|+++||+||+||||.++++++.++++++. .|++++|+|+++|.++||+|||+||..
T Consensus 81 ~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~----------------------~~~~k~~~g~~~~~~~Pdlviv~~~~~ 138 (193)
T cd01425 81 SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEK----------------------EKLEKNLGGIKDMFRLPDLVIVLDPRK 138 (193)
T ss_pred CeeecCeecCCcCCCHHHHHHHHHHHHHHHH----------------------HHHHHhcccccccccCCCEEEEeCCcc
Confidence 9999999999999999999999998876632 678999999999999999999999999
Q ss_pred chhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhh
Q psy3752 336 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 390 (1012)
Q Consensus 336 ~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~ 390 (1012)
|++|++||.++||||||+|||||||+.|||||||||||.+|++|++++|++||++
T Consensus 139 ~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~ 193 (193)
T cd01425 139 EHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALILWLLARAILE 193 (193)
T ss_pred chHHHHHHHHcCCCEEEEecCCCCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999863
No 10
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=100.00 E-value=1.2e-53 Score=430.85 Aligned_cols=171 Identities=24% Similarity=0.366 Sum_probs=163.4
Q ss_pred hhhhhhcccccCccccccCCCCcceeeccc-CCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHH
Q psy3752 173 AEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA 251 (1012)
Q Consensus 173 ~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r-~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a 251 (1012)
+++|+++|+|+||+. |||+|++||||+| +|+|||||++|+++|++|+++++.++ +|+|||||||++++++|+++|
T Consensus 6 i~~ll~agvH~Gh~~--~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~--~~~ILfVgtk~~~~~~V~~~A 81 (196)
T TIGR01012 6 VDKYLAAGVHIGTQN--KTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE--PEDILVVSARIYGQKPVLKFA 81 (196)
T ss_pred HHHHHhCCeecCCCc--CCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh--CCeEEEEecCHHHHHHHHHHH
Confidence 889999999999984 8999999999999 69999999999999999999999996 999999999999999999999
Q ss_pred HHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEe
Q psy3752 252 VRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFII 331 (1012)
Q Consensus 252 ~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~ 331 (1012)
++||++||++||+|||||||.+- .| ++||++||+
T Consensus 82 ~~~g~~~v~~RWlgGtLTN~~~~-----------------~~-----------------------------~~Pdlliv~ 115 (196)
T TIGR01012 82 KVTGARAIAGRFTPGTFTNPMQK-----------------AF-----------------------------REPEVVVVT 115 (196)
T ss_pred HHhCCceECCeeCCCCCCCcccc-----------------cc-----------------------------CCCCEEEEE
Confidence 99999999999999999999630 01 489999999
Q ss_pred CCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752 332 DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393 (1012)
Q Consensus 332 ~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~ 393 (1012)
||..|++||+||+++||||||||||||||++|||||||||||.+|++|++|+|+++|++++.
T Consensus 116 dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~Si~li~~lla~ail~~~g 177 (196)
T TIGR01012 116 DPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHSLALIYWLLAREILRMRG 177 (196)
T ss_pred CCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 11
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=100.00 E-value=6.5e-53 Score=425.77 Aligned_cols=183 Identities=48% Similarity=0.729 Sum_probs=180.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHHH
Q psy3752 830 SDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAI 909 (1012)
Q Consensus 830 ~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai 909 (1012)
+.++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++||
T Consensus 3 ~~~~~~~~~~m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI 82 (185)
T PRK00083 3 NEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAI 82 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHH
Q psy3752 910 NEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQK 989 (1012)
Q Consensus 910 ~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~ 989 (1012)
++||||+||++||++|||+||+||+|+|++++|.+|+.+|+||++||||||++++++|+++|++.+|||+.++++++||+
T Consensus 83 ~~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQk 162 (185)
T PRK00083 83 RASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQK 162 (185)
T ss_pred HHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q psy3752 990 LTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus 990 ~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
+||+|+++||+++++||||||+|
T Consensus 163 ltd~~i~~id~~~~~Kekeim~v 185 (185)
T PRK00083 163 LTDKYIKKIDELLAAKEKEIMEV 185 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986
No 12
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=3.6e-53 Score=429.93 Aligned_cols=184 Identities=26% Similarity=0.420 Sum_probs=170.6
Q ss_pred cchhhhhhhcccccCccccccCCCCcceeeccc-CCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHH
Q psy3752 170 LTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA 248 (1012)
Q Consensus 170 lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r-~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~ 248 (1012)
++ +++|+++|+|+||+. |||+|++||||.| +|+|||||++|+++|++||++|..+ ++|+|||||||++++++|+
T Consensus 10 v~-i~~ll~ag~H~Gh~~--~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ILfVgTk~~~~~~v~ 84 (204)
T PRK04020 10 VP-LEEYLAAGVHIGTQQ--KTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY--EPEKILVVSSRQYGQKPVQ 84 (204)
T ss_pred ee-HHHHHhCCeEcCCCc--CCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHH
Confidence 45 899999999999986 7999999999999 6999999999999999999999997 7999999999999999999
Q ss_pred HHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEE
Q psy3752 249 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI 328 (1012)
Q Consensus 249 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~ 328 (1012)
++|++||++||++||+||+||||+. + ++ .+||++
T Consensus 85 k~A~~~g~~~v~~RWlgG~LTN~~~-----~---------------------------------~~--------~~Pdli 118 (204)
T PRK04020 85 KFAEVVGAKAITGRFIPGTLTNPSL-----K---------------------------------GY--------IEPDVV 118 (204)
T ss_pred HHHHHhCCeeecCccCCCcCcCcch-----h---------------------------------cc--------CCCCEE
Confidence 9999999999999999999999972 0 01 289999
Q ss_pred EEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChH
Q psy3752 329 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM 406 (1012)
Q Consensus 329 iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~ 406 (1012)
||+||..|++||+||+++||||||||||||||++|||||||||||++||+|++|+|+++|++|+ .+|++...|+++
T Consensus 119 iv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~SI~li~~ll~~aIl~~k--g~~~~~~~~~v~ 194 (204)
T PRK04020 119 VVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALVYWLLAREILRER--GEIKPDEDLPVP 194 (204)
T ss_pred EEECCcccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHHHHHHHHHHHHHHHHhh--CccCCCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 457666666553
No 13
>PRK09377 tsf elongation factor Ts; Provisional
Probab=100.00 E-value=1.7e-52 Score=448.27 Aligned_cols=205 Identities=43% Similarity=0.624 Sum_probs=194.4
Q ss_pred hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEeCCEEEEEEEecCchhhh
Q psy3752 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 469 (1012)
Q Consensus 390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~~~~~~lve~~~etdfva 469 (1012)
+...+|+||++||+|||||||||.++|||+|+|++|||++|.++|+||++|.|+||+|+++++++.|+|||+||||||||
T Consensus 5 s~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~akA~Kk~~R~a~EG~I~~~~~~~~~~~vElncETDFVA 84 (290)
T PRK09377 5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAAKVDGNKGVLVEVNSETDFVA 84 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhhHHHhcCccccceEEEEEeCCCEEEEEEEecCCcccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhHhhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeec-CCeeeeeccC-CceE
Q psy3752 470 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKT-NNNLISYLHD-NKIG 547 (1012)
Q Consensus 470 ~~~~f~~l~~~ia~~iaa~~p~~~~~l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~-g~~i~~y~H~-~~~g 547 (1012)
||+.|+.|+++++.++++..|.++++|.+..+ ++.||+|.+.+.++++||||+|+||.+++. |+.+++|+|+ ||||
T Consensus 85 rne~F~~l~~~i~~~~l~~~~~~~e~ll~~~~--~g~tv~d~i~~~~~~iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkig 162 (290)
T PRK09377 85 KNEDFQALANEVAEAALAAKPADVEALLALKL--DGGTVEEARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIG 162 (290)
T ss_pred CChHHHHHHHHHHHHHHhcCCCCHHHHHhccc--cCCcHHHHHHHHHHHhcCceEEEEEEEEeecCCEEEEEEcCCCcEE
Confidence 99999999999999999999999999887766 356999999999999999999999999974 5679999998 6999
Q ss_pred EEEEecCCchHHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHH
Q psy3752 548 VIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA 596 (1012)
Q Consensus 548 ~~v~~~~~~~~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~ 596 (1012)
+||.+++..++++++||||||||+|.|++++++|++++++|++++..++
T Consensus 163 vlV~~~~~~~~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~E~~i~~~~~ 211 (290)
T PRK09377 163 VLVALEGGDEELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQA 211 (290)
T ss_pred EEEEEccCcHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHH
Confidence 9999999888899999999999999999999999999999999888775
No 14
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=100.00 E-value=1.8e-52 Score=448.07 Aligned_cols=205 Identities=38% Similarity=0.556 Sum_probs=191.7
Q ss_pred hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEeCCEEEEEEEecCchhhh
Q psy3752 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 469 (1012)
Q Consensus 390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~~~~~~lve~~~etdfva 469 (1012)
+...+|+||++||+|||||||||.++|||+|+|++|||++|.++|+||++|.|+||+|++|++++.|+|||+||||||||
T Consensus 4 sa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncETDFVA 83 (290)
T TIGR00116 4 TAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSETDFVA 83 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecCCcccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhHhhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecC-CeeeeeccC-CceE
Q psy3752 470 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTN-NNLISYLHD-NKIG 547 (1012)
Q Consensus 470 ~~~~f~~l~~~ia~~iaa~~p~~~~~l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g-~~i~~y~H~-~~~g 547 (1012)
||+.|++|+++|++++++.++.+++.+.+..+. ++.|| |.+.+.++++||||+|+||.++..+ ..+++|+|+ ||+|
T Consensus 84 rne~F~~l~~~ia~~~~~~~~~~~e~l~~~~~~-~~~tv-d~i~~~~a~iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkig 161 (290)
T TIGR00116 84 KNAGFKEFANKLLDELKANKITTLEELQAQELE-NREKV-EYLAALAAKIGENINLRRVAVLEGDSNVIGSYLHAGARIG 161 (290)
T ss_pred CChHHHHHHHHHHHHHHhcCCCCHHHHhhcccc-CCCcH-HHHHHHHHHhccceEEEEEEEEecCCCcEEEEEcCCCcEE
Confidence 999999999999999999999999998887664 45699 9999999999999999999999753 369999996 7999
Q ss_pred EEEEecCC-chHHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHH
Q psy3752 548 VIVEYNGD-NESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA 596 (1012)
Q Consensus 548 ~~v~~~~~-~~~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~ 596 (1012)
+||.+++. .++++++||||||||+|.|++++++|++++++|++++..++
T Consensus 162 vlv~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~vie~Erei~~~~~ 211 (290)
T TIGR00116 162 VLVALKGKADEELAKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTDQA 211 (290)
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCccCchhhCCHHHHHHHHHHHHHHH
Confidence 99999985 45789999999999999999999999999999999877775
No 15
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=100.00 E-value=1.1e-51 Score=413.44 Aligned_cols=175 Identities=46% Similarity=0.731 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHHHHhcCCCCC
Q psy3752 838 QKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLN 917 (1012)
Q Consensus 838 ~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~ 917 (1012)
++|++++++|+++|+++|+||+||++||+|+|+|||+++||+|||+|+++++++|+|+|||++++++|++||++||||+|
T Consensus 2 ~~M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lgln 81 (176)
T TIGR00496 2 ERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLN 81 (176)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHH
Q psy3752 918 PTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILE 997 (1012)
Q Consensus 918 p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~ 997 (1012)
|++||+.|||+||+||+|+|++++|.+|+.+|++|++||||||++++++|+++|++.+|||+.++++++||++||+|+++
T Consensus 82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~ 161 (176)
T TIGR00496 82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKK 161 (176)
T ss_pred cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q psy3752 998 INQLLINKEKEILTL 1012 (1012)
Q Consensus 998 id~~~~~kekel~~~ 1012 (1012)
+|+++++||||||+|
T Consensus 162 id~~~~~Kekeim~v 176 (176)
T TIGR00496 162 IDEILKDKEKELMEV 176 (176)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 16
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=100.00 E-value=8.9e-52 Score=428.24 Aligned_cols=183 Identities=24% Similarity=0.343 Sum_probs=168.9
Q ss_pred hhhhhhcccccCccccccCCCCcceeecc-cCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHH
Q psy3752 173 AEKIMQAGVHFGHQTRFWNPKMSSYIFGH-RNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA 251 (1012)
Q Consensus 173 ~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~-r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a 251 (1012)
+++|+++|+|+||+ +|||+|++||||+ ++|+|||||.+||++|++|+++|..+ .++++|||||||++++++|+++|
T Consensus 15 i~~lL~agvHlG~~--~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i-~~~~~Il~Vstr~~~~~~V~k~A 91 (249)
T PTZ00254 15 IKKMLACKCHIGTK--NLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAI-ENPADVVVVSSRPYGQRAVLKFA 91 (249)
T ss_pred HHHHHhcCceeccC--cCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHH-hCCCcEEEEEcCHHHHHHHHHHH
Confidence 78999999999985 6999999999997 59999999999999999999999998 78999999999999999999999
Q ss_pred HHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEe
Q psy3752 252 VRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFII 331 (1012)
Q Consensus 252 ~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~ 331 (1012)
.+||++||++||+|||||||.+- .| ++||+|||+
T Consensus 92 ~~tg~~~i~~Rw~pGtlTN~~~~-----------------~f-----------------------------~~P~llIV~ 125 (249)
T PTZ00254 92 QYTGASAIAGRFTPGTFTNQIQK-----------------KF-----------------------------MEPRLLIVT 125 (249)
T ss_pred HHhCCeEECCcccCCCCCCcccc-----------------cc-----------------------------CCCCEEEEe
Confidence 99999999999999999998630 01 489999999
Q ss_pred CCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChH
Q psy3752 332 DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM 406 (1012)
Q Consensus 332 ~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~ 406 (1012)
||..|++||+||+++||||||||||||||++|||||||||||++||+|++|+|+++|++++. ++-+...|++|
T Consensus 126 Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~~SI~li~~lLar~Vl~~rG--~~~r~~~~~v~ 198 (249)
T PTZ00254 126 DPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAREVLRLRG--TLPRDEEWDVM 198 (249)
T ss_pred CCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchHHHHHHHHHHHHHHHHHhhC--ccccCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999885 44445555554
No 17
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=100.00 E-value=2.6e-50 Score=407.07 Aligned_cols=178 Identities=49% Similarity=0.724 Sum_probs=176.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHHHHhc
Q psy3752 833 KKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEA 912 (1012)
Q Consensus 833 ~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai~~s 912 (1012)
+++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++++++|+|+|||++++++|++||++|
T Consensus 2 ~~~~~~~m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s 81 (179)
T cd00520 2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS 81 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHH
Q psy3752 913 NLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTD 992 (1012)
Q Consensus 913 ~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~ 992 (1012)
|||+||++||++|||+||+||+|+|++++|.+|+.+|++|++|||+||++++++|++++++.+|||+.++++++||++||
T Consensus 82 ~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd 161 (179)
T cd00520 82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD 161 (179)
T ss_pred CCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy3752 993 KFILEINQLLINKEKEIL 1010 (1012)
Q Consensus 993 ~~~~~id~~~~~kekel~ 1010 (1012)
+|++++|++++.||||||
T Consensus 162 ~~i~~id~~~~~Kekeim 179 (179)
T cd00520 162 EYIKKIDELLKSKEKELL 179 (179)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999999998
No 18
>KOG0832|consensus
Probab=100.00 E-value=5.4e-50 Score=396.67 Aligned_cols=198 Identities=35% Similarity=0.622 Sum_probs=177.5
Q ss_pred ccccchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHH
Q psy3752 167 MESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGV 246 (1012)
Q Consensus 167 ~~~lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~ 246 (1012)
...++ ++.|+.+|+|+||++..|||.|+|||||.|+|+|||||++|..+|++|++|++.++..||.||||||++.+...
T Consensus 45 ~~~~~-v~~L~~agvHlGh~t~~wn~~m~pyiyG~R~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ 123 (251)
T KOG0832|consen 45 PELIS-VEELFNAGVHLGHKTGKWNPRMKPYIYGKRLGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDL 123 (251)
T ss_pred hhhcc-HHHHHhccccccccccccCcccchhhcccccCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHH
Confidence 34566 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCC
Q psy3752 247 IANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPD 326 (1012)
Q Consensus 247 v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~ 326 (1012)
|+.+|+++|++|++.+|+||+||||.++..+..+ .|..++++- .| -.+-.||
T Consensus 124 ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~-----------~~~~~pd~~-------------~f----~~t~~~D 175 (251)
T KOG0832|consen 124 VERAARRAGGYSHNRKWLGGLLTNARELFGALVR-----------KFLSLPDAL-------------CF----LPTLTPD 175 (251)
T ss_pred HHHHHHHhcCceeeeeeccceeecchhhcccccc-----------cccCCCcce-------------ee----cccCCcc
Confidence 9999999999999999999999999987554432 121122211 11 1223679
Q ss_pred EEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752 327 AIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393 (1012)
Q Consensus 327 ~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~ 393 (1012)
+|||+||.+++.|++||.+++|||||||||||+|++|||||||||||+.|+.|+++++..||.+|+.
T Consensus 176 ~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~ 242 (251)
T KOG0832|consen 176 LVVVLNPEENHSAILEAAKMAIPTIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQ 242 (251)
T ss_pred eeEecCcccccHHHHHHHHhCCCeEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 19
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=100.00 E-value=2.8e-44 Score=360.90 Aligned_cols=165 Identities=48% Similarity=0.713 Sum_probs=160.7
Q ss_pred HHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHHHHhcCCCCCcccCCCeE
Q psy3752 846 ILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNII 925 (1012)
Q Consensus 846 ~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~p~~~~~~i 925 (1012)
||+++|+++|+||+||++||+|+|++||+++||+++|||+++++++|+|+|||++++++|++||++|+||+||+.||+.|
T Consensus 1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i 80 (165)
T PF01765_consen 1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI 80 (165)
T ss_dssp HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 926 YVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 1005 (1012)
Q Consensus 926 ~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~k 1005 (1012)
+|+||+||+|+|++++|.+|+.+|+||++||++|+++++++|++++++.+|+|+.++++++||++||+|++++|++++.|
T Consensus 81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 160 (165)
T PF01765_consen 81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK 160 (165)
T ss_dssp EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy3752 1006 EKEIL 1010 (1012)
Q Consensus 1006 ekel~ 1010 (1012)
|||||
T Consensus 161 ekell 165 (165)
T PF01765_consen 161 EKELL 165 (165)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 99998
No 20
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=100.00 E-value=1.6e-41 Score=345.13 Aligned_cols=147 Identities=46% Similarity=0.631 Sum_probs=140.2
Q ss_pred hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEe--CCEEEEEEEecCchh
Q psy3752 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDF 467 (1012)
Q Consensus 390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~--~~~~~lve~~~etdf 467 (1012)
+..++|+||++||+||||||+||.+++||+|+|++|||++|.++|+||++|.|+||+|++|+| ++.|+|||+||||||
T Consensus 4 ~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDF 83 (198)
T PRK12332 4 TAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCETDF 83 (198)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEeccCCc
Confidence 456799999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred hhcchHHHHHHHHHHHHHHhcCCCChhH----------------------------------------------hhcccc
Q psy3752 468 VAKNNEFIKFSKKIAKLITENTPINLDQ----------------------------------------------LNNLKI 501 (1012)
Q Consensus 468 va~~~~f~~l~~~ia~~iaa~~p~~~~~----------------------------------------------l~q~~~ 501 (1012)
||+|+.|+.|+++||||||+++|.+++. +.|+|+
T Consensus 84 Va~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~~~gKP~~i~ekiv~Grl~K~~~E~~Ll~Q~fv 163 (198)
T PRK12332 84 VARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFI 163 (198)
T ss_pred cccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHHHHHHHhhhhhhcCccc
Confidence 9999999999999999999999987544 578999
Q ss_pred cCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCe
Q psy3752 502 KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNN 536 (1012)
Q Consensus 502 ~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~ 536 (1012)
.|++.||++++.+.++++||||+|+||.||++|||
T Consensus 164 ~d~~~TV~e~l~e~~a~iGEnI~V~rF~R~evGeg 198 (198)
T PRK12332 164 KDPSKTVEDLIKEAIAKIGENIVVRRFARFELGEG 198 (198)
T ss_pred CCCCccHHHHHHHHHHHhCCCeEEEEEEEEEcCCC
Confidence 98889999999999999999999999999999985
No 21
>CHL00098 tsf elongation factor Ts
Probab=100.00 E-value=8.6e-41 Score=339.10 Aligned_cols=147 Identities=46% Similarity=0.601 Sum_probs=140.6
Q ss_pred hhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEe--CCEEEEEEEecCchhh
Q psy3752 391 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFV 468 (1012)
Q Consensus 391 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~--~~~~~lve~~~etdfv 468 (1012)
..++|+||++||+||||||+||.+++||+|+|++|||++|.++|+||++|.|++|.|++|+| +++|||||+|||||||
T Consensus 2 a~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a~kk~~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfV 81 (200)
T CHL00098 2 AELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIESYIHTGGKLGVLVEINCETDFV 81 (200)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhccccccCeEEEEEecCCCEEEEEEEecCcccc
Confidence 45789999999999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHhc-CCCChhH----------------------------------------------hhcccc
Q psy3752 469 AKNNEFIKFSKKIAKLITEN-TPINLDQ----------------------------------------------LNNLKI 501 (1012)
Q Consensus 469 a~~~~f~~l~~~ia~~iaa~-~p~~~~~----------------------------------------------l~q~~~ 501 (1012)
|+|+.|++||++|||||||+ +|.+++. |+|+|+
T Consensus 82 Arn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~~~~gKp~~i~ekiv~Grl~k~~~e~~LLeQ~fv 161 (200)
T CHL00098 82 ARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFI 161 (200)
T ss_pred cccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhHHHHHHHHhhhhcCccc
Confidence 99999999999999999999 6876544 789999
Q ss_pred cCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCee
Q psy3752 502 KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 537 (1012)
Q Consensus 502 ~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~i 537 (1012)
+|++.||++++++.++++|||++|+||.||++|||+
T Consensus 162 ~D~~~TV~~~l~e~~akiGeni~V~rF~R~~vGegi 197 (200)
T CHL00098 162 RDQSITVEELIKQNIAKLGENIQIRRFARFTLGEGE 197 (200)
T ss_pred CCCCccHHHHHHHHHHhcCCCcEEEEEEEEEecCCc
Confidence 999999999999999999999999999999999986
No 22
>KOG4759|consensus
Probab=100.00 E-value=2.4e-40 Score=337.29 Aligned_cols=193 Identities=39% Similarity=0.521 Sum_probs=180.3
Q ss_pred ceEEEEeeehhhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeec
Q psy3752 818 GTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPF 897 (1012)
Q Consensus 818 GT~I~~~~~~~~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~ 897 (1012)
||....+.....+.+..++.++|+++++.|+++|.++++||++|.++|+|.|+++|.+.||++||+||+++|++|+|+||
T Consensus 70 ~~~~in~~~~e~~~~~~~~~sqmek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn~~ 149 (263)
T KOG4759|consen 70 GTEKINEAELEENAVEAKANSQMEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILINPF 149 (263)
T ss_pred chhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEecc
Confidence 44433333344567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-cccHHHHHHHHHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3752 898 E-KEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILS 976 (1012)
Q Consensus 898 d-~~~~~~i~~ai~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s 976 (1012)
| |..+++|++||.+|+||+||++||++|+|+|||+|.|+|++|+|.+++++|++|.+||++|++++++++|.++. ++
T Consensus 150 d~p~~ikai~kAI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~--~~ 227 (263)
T KOG4759|consen 150 DFPVDIKAILKAIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS--LS 227 (263)
T ss_pred cCchHHHHHHHHHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CC
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999988876543 99
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3752 977 VDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus 977 ~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
+|+++++++++|+++|+|++++|++++.||||||..
T Consensus 228 ~D~vkkae~~l~~l~k~~v~~ld~llkskeKellk~ 263 (263)
T KOG4759|consen 228 EDEVKKAEAELQKLAKDAVNKLDDLLKSKEKELLKQ 263 (263)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999863
No 23
>KOG1071|consensus
Probab=100.00 E-value=2.7e-40 Score=342.91 Aligned_cols=187 Identities=33% Similarity=0.482 Sum_probs=164.3
Q ss_pred hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhh----hhhhhhccccccCceEEEEEeCCEEEEEEEecCc
Q psy3752 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLG----KKILNISNRNAKDGVIAIYISEKVGSLVEINCET 465 (1012)
Q Consensus 390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~----~~a~k~~~r~~~eG~v~~~~~~~~~~lve~~~et 465 (1012)
.-..+|+||++||++|++|||||+|||||+.+|.+||+|+++ .+|+|+++|.|+||+|++|+|+..+||||+||||
T Consensus 46 ~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k~aqk~g~~~A~K~~sR~t~eGlIgv~~~~~r~vlvElNCET 125 (340)
T KOG1071|consen 46 SKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHKKAQKEGWSKAAKKASRTTKEGLIGVLQEDGRTVLVELNCET 125 (340)
T ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhhHHhhhcccccccceeEEEEeCCeEEEEEeeccc
Confidence 344689999999999999999999999999999999999965 4599999999999999999997777999999999
Q ss_pred hhhhcchHHHHHHHHHHHHHHh------cCCCChh-------------------HhhcccccCCCccHHHHHHHHHHHhC
Q psy3752 466 DFVAKNNEFIKFSKKIAKLITE------NTPINLD-------------------QLNNLKIKNNLLTVDEKCKELISRIG 520 (1012)
Q Consensus 466 dfva~~~~f~~l~~~ia~~iaa------~~p~~~~-------------------~l~q~~~~~~~~tv~~~~~~~~~~~g 520 (1012)
||||||+.||.|+.+||+.+++ .+|..++ -+.+.+..+++.||+|.+.+.|+++|
T Consensus 126 DFVARn~~Fq~Lv~~iA~~~l~~~~~~~~~~s~~s~e~~l~~~~~g~kl~~~~~~l~~~~d~~gkvsl~d~l~~~i~~~G 205 (340)
T KOG1071|consen 126 DFVARNDIFQDLVDQIALSVLAHCQTLKTKHSSYSKEKELEMDGRGFKLSESLSLLPNLPDVEGKVSLKDQLALAIGKLG 205 (340)
T ss_pred chhhccchHHHHHHHHHHHHHHhhhhcccChhhhhhhhhccccchHHHhhHHHhhccCCCCcccceeHHHHHHHHHHHhc
Confidence 9999999999999999998877 2333222 15677777788899999999999999
Q ss_pred CceEEEEEEEeecCCe--eeeeccC------------CceEEEEEecCCch------HHHHHHHHHHhccCCcccC
Q psy3752 521 ENIKIRRFKLFKTNNN--LISYLHD------------NKIGVIVEYNGDNE------SAVKDVAMHIAAMKPIALS 576 (1012)
Q Consensus 521 eni~v~rf~~~~~g~~--i~~y~H~------------~~~g~~v~~~~~~~------~~~~~~amhi~a~~p~~~~ 576 (1012)
|||+|+|+.+|..++| +++|.|+ |++|+||.++...+ .+++.||+||++|+|..+.
T Consensus 206 ENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~~~~~~~~~i~q~ivgm~p~s~~ 281 (340)
T KOG1071|consen 206 ENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLTSLEDVAKQICQHIVGMSPESVG 281 (340)
T ss_pred cceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhhhHHHHHHHHHHHhhccChhhhc
Confidence 9999999999998664 9999995 38999998876433 4789999999999999876
No 24
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.8e-38 Score=318.47 Aligned_cols=233 Identities=50% Similarity=0.796 Sum_probs=223.2
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 668 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
++++++|+ +|+++.++.+..+|.+.+.+++++|+++.+.|.+|.||.|||+.++++.....++++...|+++|+++.+
T Consensus 5 ~~rillkL--sGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvm 82 (238)
T COG0528 5 YMRILLKL--SGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVM 82 (238)
T ss_pred eEEEEEEe--ecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHH
Confidence 45678898 8998887777889999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeec
Q psy3752 669 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 748 (1012)
Q Consensus 669 ~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTD 748 (1012)
|+.+|.++|...|++++.+|+..+.++.++++.+...+.|+.|.|+|++|+.|+|++|+|+.|+++|..++||.|+..|+
T Consensus 83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn 162 (238)
T COG0528 83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATN 162 (238)
T ss_pred HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEecc
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999995
Q ss_pred -cccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 749 -VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 749 -VdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
|||||++||+++|+|+++++++|.|+++.+..++|++|+.+++++++|++++|..+++++.+++.|+.+||+|.+
T Consensus 163 ~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~ 238 (238)
T COG0528 163 KVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238)
T ss_pred CCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999863
No 25
>PRK14556 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.6e-36 Score=318.89 Aligned_cols=233 Identities=45% Similarity=0.681 Sum_probs=218.9
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-cCCCcchHHHHHHHHHH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-QNIDRSTADYMGMLATI 667 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 667 (1012)
++++++|+ +|+++.+.++..+|.+.+..++++|+++.+.|+++.||+|||+.+++..... .++++..+|+++|+++.
T Consensus 15 ~~rvllKl--sGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~ 92 (249)
T PRK14556 15 LKRILLKL--SGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATM 92 (249)
T ss_pred hCEEEEEE--ehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHH
Confidence 57889998 9999887777789999999999999999999999999999999999855553 46899999999999999
Q ss_pred HHHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeee
Q psy3752 668 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT 747 (1012)
Q Consensus 668 ~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilT 747 (1012)
+|+.+|.++|.+.|++++.+++.......++++.+.+.+.++.|.|||++|+.|+|++|+|++|+++|..++||+|+++|
T Consensus 93 iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~T 172 (249)
T PRK14556 93 INALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKAT 172 (249)
T ss_pred HHHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 748 KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 748 DVdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
|||||||+||+.+|+|++++++++.+..+.+..+++..|+++|.++|+|++|+|+.+|++|.+++.|+.+||+|+-
T Consensus 173 dVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 173 TVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred CCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 9999999999999999999999999888777788899999999999999999999999999999999999999963
No 26
>PRK14558 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=3e-33 Score=299.06 Aligned_cols=229 Identities=41% Similarity=0.655 Sum_probs=196.3
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHH
Q psy3752 591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS 670 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1012)
++|+|+ +|+.++++++..++.+.+++++++|+++++.|++++||||||+++++... .+++....+.+++....+++
T Consensus 2 riviKl--Ggs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~--~~~~~~~~d~ig~~~~~ln~ 77 (231)
T PRK14558 2 RVLLKL--SGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVEL--KELSPTRADQIGMLGTVINA 77 (231)
T ss_pred eEEEEe--eHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhc--cCCChHHHHHHHHHHHHHHH
Confidence 467884 44444444456799999999999999999999999999999988775432 24555567888887777777
Q ss_pred HHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeeccc
Q psy3752 671 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 750 (1012)
Q Consensus 671 ~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVd 750 (1012)
.++..+|..+|++++.+++............+.+..+++.|.|||++|+.|.+..++|++|+++|..++||.|+++||||
T Consensus 78 ~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVd 157 (231)
T PRK14558 78 LYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVD 157 (231)
T ss_pred HHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCC
Confidence 77899999999999887764322222345578889999999999999998889999999999999999999999999999
Q ss_pred cccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 751 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 751 GVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
||||+||+.+|+|+++++++++|+.+.|.+++|+.|+++|.++|++++|+||.+|+++.+++.|+.+||+|.+
T Consensus 158 Gvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 158 GIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred eeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 9999999999999999999999998888899999999999999999999999999999999999999999965
No 27
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....
Probab=100.00 E-value=1.4e-33 Score=295.00 Aligned_cols=154 Identities=43% Similarity=0.692 Sum_probs=134.7
Q ss_pred ccCceEEEEEeCCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhHhhcccccCCCccHHHHHHHHHHHhCC
Q psy3752 442 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGE 521 (1012)
Q Consensus 442 ~~eG~v~~~~~~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~l~q~~~~~~~~tv~~~~~~~~~~~ge 521 (1012)
|+||+|+++++++.|+|||+||||||||||+.|++|+++||..++...+.+++++.+..+.+ .||+|.+.++++++||
T Consensus 1 a~EG~V~~~v~~~~a~~vElncETDFVArn~~F~~l~~~ia~~~~~~~~~~~~~l~~~~~~~--~tv~d~i~~~i~~igE 78 (221)
T PF00889_consen 1 AAEGLVGIAVSGDKAAMVELNCETDFVARNEEFQNLAKEIADAALENKASDVEELLALPLAS--KTVKDAIAELIAKIGE 78 (221)
T ss_dssp --EEEEEEEEETTEEEEEEEEESSHHHHTSHHHHHHHHHHHHHHHCTTEESHHHHHHSB--S--SHHHHHHHHHHHHH-S
T ss_pred CCceEEEEEEeCCcEEEEEEEccccceecCHHHHHHHHHHHHHHHHhCCCCHHHHHhccccc--ccHHHHHHHHHHHhCC
Confidence 57999999999888999999999999999999999999999999988888999998887765 7999999999999999
Q ss_pred ceEEEEEEEeec-CCeeeeeccC-CceEEEEEecCCch---HHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHH
Q psy3752 522 NIKIRRFKLFKT-NNNLISYLHD-NKIGVIVEYNGDNE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA 596 (1012)
Q Consensus 522 ni~v~rf~~~~~-g~~i~~y~H~-~~~g~~v~~~~~~~---~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~ 596 (1012)
||+|+||.+++. ++.+++|+|+ ||+|+||.+++.++ ++|++||||||||+|.+++++++|++++++|++++..++
T Consensus 79 nI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~~~~~E~~i~~~~~ 158 (221)
T PF00889_consen 79 NIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSAKEFAKDIAMHIAAMNPKYLSEEDVPAEVLEKEKEIAKEQA 158 (221)
T ss_dssp -EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGGHHHHHHHHHHHHHH--SBSSCTGS-CCHHHHHHHHHHHHH
T ss_pred CEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchHHHHHHHHHHHHhhhCccccCcccCCHHHHHHHHHHHHHHh
Confidence 999999999987 3569999999 89999999999876 799999999999999999999999999999999888776
Q ss_pred H
Q psy3752 597 Q 597 (1012)
Q Consensus 597 ~ 597 (1012)
.
T Consensus 159 ~ 159 (221)
T PF00889_consen 159 K 159 (221)
T ss_dssp H
T ss_pred h
Confidence 3
No 28
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=3.8e-33 Score=298.89 Aligned_cols=229 Identities=52% Similarity=0.841 Sum_probs=199.2
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHH
Q psy3752 592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 671 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1012)
+|+|+ +|+++..+.+..++.+.+++++++|+++++.|+++|||||||+.++++.....+++...+++.+++++.+++.
T Consensus 3 iViK~--GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (231)
T PRK00358 3 VLLKL--SGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATADYMGMLATVMNAL 80 (231)
T ss_pred EEEEe--ccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Confidence 56785 5665554555678999999999999999999999999999998888765322355556788999988888988
Q ss_pred HHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecccc
Q psy3752 672 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG 751 (1012)
Q Consensus 672 ~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVdG 751 (1012)
+|+..|..+|+++..+++.........+..+.+.++|++|.|||++|+.|++..++|++|+++|.+|+||+|+++|||||
T Consensus 81 ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVdG 160 (231)
T PRK00358 81 ALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDG 160 (231)
T ss_pred HHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcCc
Confidence 89999999999998776655544444455677889999999999999888888999999999999999999999999999
Q ss_pred ccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 752 Vy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
|||+||+.+|+|++|++++++++.+.|++++|++|+++|.++|++++|+||.+|+++.++++|+..||+|.
T Consensus 161 Vy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 161 VYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred eEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 99999999999999999999988777888999999999999999999999999999999999999999984
No 29
>PRK14557 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=6.3e-33 Score=296.16 Aligned_cols=236 Identities=39% Similarity=0.641 Sum_probs=206.9
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 668 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
++++|+|+ +|+++.+++...++.+.+++++++|+++.+.|++++||||||+.+++......++++..+|+++++++.+
T Consensus 4 ~~riViKl--GG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~~~~~D~ig~~g~~l 81 (247)
T PRK14557 4 YKRVLIKL--SGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTII 81 (247)
T ss_pred ccEEEEEe--CceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 56788998 8888876555678899999999999999999999999999998887544444456777889999999999
Q ss_pred HHHHHHHHHHhc-CCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEee-
Q psy3752 669 NSLALFDILNKS-GIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA- 746 (1012)
Q Consensus 669 ~~~~l~~~l~~~-gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liil- 746 (1012)
++.++..+|... +..+..++...+.....++....+.+.|++|.|||++|++|.+.+|+|++|+++|..++||.|+++
T Consensus 82 na~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~t 161 (247)
T PRK14557 82 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAK 161 (247)
T ss_pred HHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEec
Confidence 999999998874 677666676666666666666778888999999999999999999999999999999999999999
Q ss_pred eccccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEeee
Q psy3752 747 TKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI 826 (1012)
Q Consensus 747 TDVdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~ 826 (1012)
||||||||+||+.+|+|++|+++++.|+...+..+++..|+++|.++|++++|+||.+|++|.++++|+.+||+|.+.+.
T Consensus 162 tdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~~ 241 (247)
T PRK14557 162 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS 241 (247)
T ss_pred CCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCcc
Confidence 59999999999999999999999998886666677888999999999999999999999999999999999999987654
No 30
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00 E-value=1.8e-32 Score=292.90 Aligned_cols=228 Identities=49% Similarity=0.814 Sum_probs=203.3
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHH
Q psy3752 592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 671 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1012)
+|+|+ |++++++++..++.+.+++++++|+++++.|++++||||||..+.++.....++++...+++++.++.+++.
T Consensus 2 iViKi---GGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (229)
T cd04239 2 IVLKL---SGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATADYIGMLATVMNAL 78 (229)
T ss_pred EEEEE---CcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCChhhHHHHHHHHHHHHHH
Confidence 46674 444555545589999999999999999999999999999998877766555556666789999999999999
Q ss_pred HHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecccc
Q psy3752 672 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG 751 (1012)
Q Consensus 672 ~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVdG 751 (1012)
+|+.+|..+|+++..+++.++......++.+.+..+++.|.|||++|+.|.+..++|++|+++|..++||+|+++|||||
T Consensus 79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdG 158 (229)
T cd04239 79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDG 158 (229)
T ss_pred HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCc
Confidence 99999999999999999988766656678889999999999999999989888999999999999999999999999999
Q ss_pred ccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 752 Vy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
|||+||+.+|++++|++++++++.+.+++++|++|++++.++|++++|+||+.|+++.++++|+..||+|.
T Consensus 159 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 159 VYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred ccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 99999999999999999999998887779999999999999999999999999999999999998999873
No 31
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00 E-value=1e-32 Score=294.80 Aligned_cols=229 Identities=54% Similarity=0.873 Sum_probs=202.1
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHH
Q psy3752 592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 671 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1012)
+|+|+ +|++++++++..++.+.+++++++|+++...|+++|||||||+++++......+......++++++....+..
T Consensus 3 iViKl--GGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~~~~~~~d~~g~~~~~~n~~ 80 (231)
T cd04254 3 VLLKL--SGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATADYMGMLATVINAL 80 (231)
T ss_pred EEEEe--CceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcCCCchhhhHHHHHHHHHHHH
Confidence 56786 7777776667888999999999999999888999999999998754433333344444668888887777888
Q ss_pred HHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecccc
Q psy3752 672 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG 751 (1012)
Q Consensus 672 ~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVdG 751 (1012)
+++..|..+|+++..+++.+...+...++...+..++++|.|||++|+.|.+.+++|++|+++|..++||+|+++|||||
T Consensus 81 ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdG 160 (231)
T cd04254 81 ALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDG 160 (231)
T ss_pred HHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCE
Confidence 89999999999999999988754445677899999999999999999988999999999999999999999999999999
Q ss_pred ccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 752 Vy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
||++||+.+|+++++++++++++.+.|..++|++++++|.++|++++|+||.+|++|.++|+|+.+||+|+
T Consensus 161 vy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 161 VYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 99999999999999999999998887888899999999999999999999999999999999999999984
No 32
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=100.00 E-value=1.3e-32 Score=294.09 Aligned_cols=231 Identities=57% Similarity=0.845 Sum_probs=203.4
Q ss_pred HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHH
Q psy3752 590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 669 (1012)
Q Consensus 590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1012)
+++|+|+ +|+++...++..++.+.+++++++|+++...|+++|||||||+.+.+......+.+....++++++.+.++
T Consensus 2 ~~iViKl--GGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~~~d~~g~~~~~l~ 79 (233)
T TIGR02075 2 KRVLLKL--SGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRVTADYMGMLATVIN 79 (233)
T ss_pred CEEEEEe--ChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 3567886 67766665566789999999999999998889999999999988766543333455555789999999999
Q ss_pred HHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeec-
Q psy3752 670 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK- 748 (1012)
Q Consensus 670 ~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTD- 748 (1012)
+.+++.+|..+|+++..+++.++......+..+.+.+++++|.|||+.|+.|.+..++|++|++||..++||+|+|+||
T Consensus 80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~ 159 (233)
T TIGR02075 80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG 159 (233)
T ss_pred HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence 9999999999999999999988763333456788999999999999999988999999999999999999999999999
Q ss_pred cccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 749 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 749 VdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
||||||+||+.+|++++|++++++|+.+.|....|++++++|.++|++++|+||.+|++|.++++|+.+||+|+
T Consensus 160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 99999999999999999999999998877777899999999999999999999999999999999999999984
No 33
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=3.7e-31 Score=282.37 Aligned_cols=224 Identities=18% Similarity=0.220 Sum_probs=192.9
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc----chHhhhhcccccCCCcchHHHHHHH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQNIDRSTADYMGML 664 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG----G~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1012)
.+++|+| .|+++++.+.+.++...+..++++|+.|+..|++||||+|| |...+++... |..+...+.+
T Consensus 6 ~~riVvK---iGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~r-----p~~l~~kQA~ 77 (369)
T COG0263 6 ARRIVVK---IGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKR-----PKTLAEKQAA 77 (369)
T ss_pred ceEEEEE---ECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCC-----CcchHHHHHH
Confidence 3578899 78888888788899999999999999999999999999888 4444444444 4556777789
Q ss_pred HHHHHHHHHHHH---HHhcCCce--eEeehhchhhhhhhcch-HHHHHHhhCCCEEEEcCcCCCCCCc----------cH
Q psy3752 665 ATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGIGNPFFT----------TD 728 (1012)
Q Consensus 665 ~~~~~~~~l~~~---l~~~gi~a--~~l~~~~~~~~~~~~~~-~~l~~~L~~g~VPVi~G~~g~~~~s----------~D 728 (1012)
++.+|..+|..| |..+|+.. +.++..++....+..|. ..+..+|+.|.||||+ ++++ ||
T Consensus 78 AAVGQ~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIIN-----ENDtva~~EikfGDND 152 (369)
T COG0263 78 AAVGQVRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIIN-----ENDTVATEEIKFGDND 152 (369)
T ss_pred HHhCHHHHHHHHHHHHHhcCCeeeEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeec-----CCCceeeeeeeecCCc
Confidence 999999999888 88998877 78888888777776765 5788889999999994 3333 99
Q ss_pred HHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCH--HHHHh----------hhcCcccHHHHHHHHhCCCc
Q psy3752 729 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLP 796 (1012)
Q Consensus 729 ~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~--~e~~~----------~G~~v~~~~aa~~a~~~gi~ 796 (1012)
++||.+|.+++||+|++||||||+||+||+.+|+|++|++++. .++.. +|||.+|+.|+++|.++|++
T Consensus 153 ~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~ 232 (369)
T COG0263 153 TLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVP 232 (369)
T ss_pred hHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999998874 34433 79999999999999999999
Q ss_pred EEEEecCCchhHHHHhcCCCcceEEEEee
Q psy3752 797 IRVFSIIKSGALKRVIEGKNEGTLVYEIY 825 (1012)
Q Consensus 797 v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~ 825 (1012)
++|++|..|+.+.+++.|+..||+|.|..
T Consensus 233 ~iI~~g~~~~~i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 233 VIIASGSKPDVILDALEGEAVGTLFEPQA 261 (369)
T ss_pred EEEecCCCcchHHHHHhCCCCccEEecCC
Confidence 99999999999999999999999999763
No 34
>KOG0830|consensus
Probab=99.97 E-value=1.6e-30 Score=259.58 Aligned_cols=155 Identities=23% Similarity=0.302 Sum_probs=146.7
Q ss_pred CCCCcceeeccc-CCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCcccc
Q psy3752 191 NPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT 269 (1012)
Q Consensus 191 np~m~~yi~~~r-~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lT 269 (1012)
+..|.+|+|++| +|+|||||.+||++|..|++.|..+ +|+..|.++++|+.++++|.+||..+|...|.+||+||+||
T Consensus 2 ~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~ai-enp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft 80 (254)
T KOG0830|consen 2 NFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT 80 (254)
T ss_pred CcccccccccccCCceEEeeccccHHHHHHHHHHHhhc-cCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccc
Confidence 678999999998 5999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCCC
Q psy3752 270 NFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 349 (1012)
Q Consensus 270 N~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~iP 349 (1012)
|+.+ ++ | +.|.++||+||+.|++++.|++..|+|
T Consensus 81 n~iq--~~---------------f-----------------------------~epr~lvvtdpr~d~q~~~E~s~~n~p 114 (254)
T KOG0830|consen 81 NQIQ--AA---------------F-----------------------------REPRLLVVTDPRADHQPLTEASYVNLP 114 (254)
T ss_pred hHHH--Hh---------------h-----------------------------cCCceeeecCcccccchhhhhhhcCCc
Confidence 9653 11 1 489999999999999999999999999
Q ss_pred eEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhh
Q psy3752 350 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392 (1012)
Q Consensus 350 ~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~ 392 (1012)
||+||||||+..+||..|||||+|..||.+.+|+|++++++.+
T Consensus 115 ~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~ww~LareVLrmr 157 (254)
T KOG0830|consen 115 TIALCNTDSPLCYVDIAIPCNNKGAHSVGVMWWMLAREVLRMR 157 (254)
T ss_pred eEEEecCCCccceeeeeeecCCCCcccchhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999998855
No 35
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.95 E-value=9.1e-28 Score=255.11 Aligned_cols=209 Identities=26% Similarity=0.394 Sum_probs=174.4
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccccc--CCCcchHHHHHHHHHHHH
Q psy3752 592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIIN 669 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 669 (1012)
+|+|+ +|++ ++++. +.+.+++++++|+++.. |++++||||||+.++.+..... +++....+++++..+.++
T Consensus 2 iViKl--GGs~-l~~~~---~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln 74 (221)
T cd04253 2 IVISL--GGSV-LAPEK---DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLN 74 (221)
T ss_pred EEEEe--ccce-eCCCC---ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 46775 5554 44433 78899999999998765 7899999999988877654432 244456789999999888
Q ss_pred HHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecc
Q psy3752 670 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 749 (1012)
Q Consensus 670 ~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDV 749 (1012)
+.++...+. .|++++.+ +.+.+.++|+.|.|||++|+. +++|+|++|+++|..++||.|+++|||
T Consensus 75 ~~~~~~~l~-~~~~~~~~------------~~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdV 139 (221)
T cd04253 75 ARLLIAALG-DAYPPVPT------------SYEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNV 139 (221)
T ss_pred HHHHHHHHh-cCCCcCCC------------CHHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCC
Confidence 888877776 67765543 345667889999999999975 578999999999999999999999999
Q ss_pred ccccccCCcCCcCcccccccCHHHHHh---h-----h-cCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceE
Q psy3752 750 DGIYNSDPNKCLSAIIYKKITFDEVIS---K-----K-LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 820 (1012)
Q Consensus 750 dGVy~~dP~~~~~a~~i~~i~~~e~~~---~-----G-~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~ 820 (1012)
||||++||+.+|++++|++++++++.+ . | ++++|+++++++.++|++++|+||.+|++|.++|+|+.+||+
T Consensus 140 dGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~ 219 (221)
T cd04253 140 DGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI 219 (221)
T ss_pred CeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeE
Confidence 999999999999999999999988766 1 3 368899999999999999999999999999999999999999
Q ss_pred EE
Q psy3752 821 VY 822 (1012)
Q Consensus 821 I~ 822 (1012)
|.
T Consensus 220 I~ 221 (221)
T cd04253 220 IE 221 (221)
T ss_pred eC
Confidence 83
No 36
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.95 E-value=1e-27 Score=260.39 Aligned_cols=231 Identities=18% Similarity=0.194 Sum_probs=172.1
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccccCCCcchHHHHHHHHHH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRSTADYMGMLATI 667 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1012)
.+++|+|+ |++.++++.+.++.+.+++++++|+++++.|+++|||+|| |...+...... ..+....+....++.|
T Consensus 9 ~~~iViK~---Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~-~~~~~~~~~~a~aa~G 84 (266)
T PRK12314 9 AKRIVIKV---GSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLD-KRPTSLAEKQALAAVG 84 (266)
T ss_pred CCEEEEEe---CCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccc-cCCCCHHHHHHHHHHh
Confidence 34678995 4455555556799999999999999999999999998565 44433333221 1111122223333333
Q ss_pred H--HHHHHHHHHHhcCCce--eEeehhchhhhhh-hcchHHHHHHhhCCCEEEEcCcC-----CCC--CCccHHHHHHHH
Q psy3752 668 I--NSLALFDILNKSGIIS--HVMSAISIEKFLE-SYIPLNAIKYLEEGKVVIFAGGI-----GNP--FFTTDTTAALRA 735 (1012)
Q Consensus 668 ~--~~~~l~~~l~~~gi~a--~~l~~~~~~~~~~-~~~~~~l~~~L~~g~VPVi~G~~-----g~~--~~s~D~~Aa~lA 735 (1012)
+ ...++..+|..+|+++ +.++..++..... ......+..+++.|+||||++.. +.. ..++|++|++||
T Consensus 85 q~~l~~~~~~~~~~~g~~~~q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA 164 (266)
T PRK12314 85 QPELMSLYSKFFAEYGIVVAQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVA 164 (266)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHH
Confidence 3 3455666699999987 3445555532222 22356888889999999998521 111 345999999999
Q ss_pred HhcCCceEEeeeccccccccCCcCCcCcccccccCH--HHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecC
Q psy3752 736 AEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSII 803 (1012)
Q Consensus 736 ~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~--~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~ 803 (1012)
.+++||.|+|+|||||||++||+.+|+|++|+.+++ .+..+ +|+|++|+.|+..|.++|++++|+||+
T Consensus 165 ~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~ 244 (266)
T PRK12314 165 KLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGF 244 (266)
T ss_pred HHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCC
Confidence 999999999999999999999999999999998875 33322 379999999999999999999999999
Q ss_pred CchhHHHHhcCCCcceEEEE
Q psy3752 804 KSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 804 ~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
+|++|.+++.|+.+||+|.+
T Consensus 245 ~~~~i~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 245 NPSDILDFLEGESIGTLFAP 264 (266)
T ss_pred CchHHHHHHcCCCCceEEcc
Confidence 99999999999989999976
No 37
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.95 E-value=1.5e-27 Score=256.76 Aligned_cols=228 Identities=19% Similarity=0.300 Sum_probs=174.5
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 668 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
.+++|+| .|++++++++ .++...+..++++++++++ ++++||||||| .++++... ++.......-+++++.+
T Consensus 8 ~~riVIK---lG~Svit~~~-~~~~~~~~~l~~~i~~l~~-~~~vilVssGa-va~g~~~~--~~~~~~~~~~qa~aaiG 79 (264)
T PTZ00489 8 VKRIVVK---VGSSILVDNQ-EIAAHRIEALCRFIADLQT-KYEVILVTSGA-VAAGYTKK--EMDKSYVPNKQALASMG 79 (264)
T ss_pred CCEEEEE---eccceeeCCC-CcCHHHHHHHHHHHHHHhc-CCeEEEEecCh-HhcChhhc--CCCccccHHHHHHHHhC
Confidence 4678999 5666776543 5888899999999999976 79999999776 55444421 22223333455566666
Q ss_pred HHHHHHHH---HHhcCCcee--Eeehhchhhhhhh-cchHHHHHHhhCCCEEEEcCcCCCCC----C-ccHHHHHHHHHh
Q psy3752 669 NSLALFDI---LNKSGIISH--VMSAISIEKFLES-YIPLNAIKYLEEGKVVIFAGGIGNPF----F-TTDTTAALRAAE 737 (1012)
Q Consensus 669 ~~~~l~~~---l~~~gi~a~--~l~~~~~~~~~~~-~~~~~l~~~L~~g~VPVi~G~~g~~~----~-s~D~~Aa~lA~~ 737 (1012)
+..+|..+ |..+|+.+. .++..++....+. .....+..+|+.|.|||++|....+. + +||++|++||..
T Consensus 80 q~~L~~~y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~ 159 (264)
T PTZ00489 80 QPLLMHMYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHH 159 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHH
Confidence 66665555 889999874 3444444333222 23567888999999999987432222 2 699999999999
Q ss_pred cCCceEEeeeccccccccCCcCCcCccc---ccccCHHHHHh---------hhcCcccHHHHHHHHhCCCcEEEEecCCc
Q psy3752 738 IKAEIILKATKVDGIYNSDPNKCLSAII---YKKITFDEVIS---------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS 805 (1012)
Q Consensus 738 l~Ad~liilTDVdGVy~~dP~~~~~a~~---i~~i~~~e~~~---------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~ 805 (1012)
++||+|+|+|||||||++||+.+|+|++ +++++.++... +|||.+|+.|+..|.+.|++++|++|.+|
T Consensus 160 l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~ 239 (264)
T PTZ00489 160 FKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHL 239 (264)
T ss_pred hCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 9999999999999999999999999998 67777765521 79999999999999999999999999999
Q ss_pred hhHHHHhcCC--CcceEEEEe
Q psy3752 806 GALKRVIEGK--NEGTLVYEI 824 (1012)
Q Consensus 806 ~~i~~~l~Ge--~~GT~I~~~ 824 (1012)
++|.+++.|+ ..||+|.+.
T Consensus 240 ~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 240 EKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred hHHHHHHcCCCCCCceEEeec
Confidence 9999999875 379999764
No 38
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.95 E-value=1.3e-27 Score=260.79 Aligned_cols=230 Identities=17% Similarity=0.155 Sum_probs=178.9
Q ss_pred HHHHHHHHHhhhhhhhcCCCC-cccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccc-----------cCC--
Q psy3752 589 YSLAVLKAQQLGEALMKGDAY-NINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI-----------QNI-- 653 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~-~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~-----------~~~-- 653 (1012)
.+++|+| .|++++++++. .++.+.+..++++|+.|++.|+++|||+|| |...+.+.... .+.
T Consensus 8 ~~~iVvK---iGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~ 84 (284)
T cd04256 8 AKRIVVK---LGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQL 84 (284)
T ss_pred CCEEEEE---eCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccc
Confidence 5678999 67777765444 799999999999999999999999977666 33333322211 111
Q ss_pred --CcchHHHHHHHHHHHHHHHHHHH---HHhcCCce--eEeehhchhhh-hhhcchHHHHHHhhCCCEEEEcCcCC----
Q psy3752 654 --DRSTADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIG---- 721 (1012)
Q Consensus 654 --~~~~~~~~~~~~~~~~~~~l~~~---l~~~gi~a--~~l~~~~~~~~-~~~~~~~~l~~~L~~g~VPVi~G~~g---- 721 (1012)
.+......+++++.++..+|..| |..+++++ +.++..++... ........+..+|+.|+||||+|+..
T Consensus 85 ~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~~ 164 (284)
T cd04256 85 KDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPP 164 (284)
T ss_pred cCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCccccc
Confidence 23445556777777787777776 88888877 44455444332 22234567888899999999986222
Q ss_pred ----------CCCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh----------hhcCc
Q psy3752 722 ----------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEI 781 (1012)
Q Consensus 722 ----------~~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~----------~G~~v 781 (1012)
+...++|++|++||..++||.|+++|||||||++||+ +|++++|++++..+... +|+|.
T Consensus 165 ~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~ 243 (284)
T cd04256 165 PEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGME 243 (284)
T ss_pred ccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCcH
Confidence 1235799999999999999999999999999999996 69999999998755532 69999
Q ss_pred ccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 782 MDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 782 ~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
+|+.|+..|.++|++++|++|..|++|.+++.|+.+||+|.
T Consensus 244 ~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 244 AKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 99999999999999999999999999999999999999983
No 39
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.95 E-value=3e-27 Score=251.41 Aligned_cols=209 Identities=26% Similarity=0.391 Sum_probs=174.4
Q ss_pred HHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccccc--CCCcchHHHHHHHHHHHHH
Q psy3752 593 VLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIINS 670 (1012)
Q Consensus 593 v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 670 (1012)
|+|+ +|+ +++++. +.+.+++++++|+++.+. ++++||||||+.++.+..... +.+....+++++..+.++.
T Consensus 2 ViKl--GGs-~l~~~~---~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~ 74 (221)
T TIGR02076 2 VISL--GGS-VLSPEI---DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNA 74 (221)
T ss_pred EEEe--chh-hcCCCC---CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHH
Confidence 4564 444 554443 789999999999999876 899999999988877654433 3345567899999998898
Q ss_pred HHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeeccc
Q psy3752 671 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 750 (1012)
Q Consensus 671 ~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVd 750 (1012)
.++...|...+++++..+ .....+.++.|.+||++|+. +++|+|++|+++|.+++||+|+++||||
T Consensus 75 ~~l~~ll~~~~~~~~~~~------------~~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVd 140 (221)
T TIGR02076 75 MLLIAALGDDAYPKVPEN------------FEEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVD 140 (221)
T ss_pred HHHHHHHHhcCCCCcCCC------------HHHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence 888877877777765432 33446678999999999974 7889999999999999999999999999
Q ss_pred cccccCCcCCcCcccccccCHHHHHh--------hh-cCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEE
Q psy3752 751 GIYNSDPNKCLSAIIYKKITFDEVIS--------KK-LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821 (1012)
Q Consensus 751 GVy~~dP~~~~~a~~i~~i~~~e~~~--------~G-~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I 821 (1012)
|||++||+.+|++++|++++++++.+ .| +|.+|++|++++.+.|++++|+||..|+++.+++.|+..||+|
T Consensus 141 Gvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 220 (221)
T TIGR02076 141 GVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220 (221)
T ss_pred cccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence 99999999999999999999988765 14 5688999999999999999999999999999999999899998
Q ss_pred E
Q psy3752 822 Y 822 (1012)
Q Consensus 822 ~ 822 (1012)
.
T Consensus 221 ~ 221 (221)
T TIGR02076 221 E 221 (221)
T ss_pred C
Confidence 3
No 40
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.95 E-value=2.4e-27 Score=266.26 Aligned_cols=231 Identities=16% Similarity=0.179 Sum_probs=174.0
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 668 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
.+++|+|+ |++.+++..+.++.+.+..++++|+++++.|+++|||||||. +.+..... ..........+++++.+
T Consensus 5 ~kriVIKi---Ggs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGav-a~G~~~l~-~~~~~~~~~~qalaavG 79 (368)
T PRK13402 5 WKRIVVKV---GSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAV-AAGYHKLG-FIDRPSVPEKQAMAAAG 79 (368)
T ss_pred CcEEEEEE---chhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChh-hcCccccC-CCCCCCccHHHHHHHhh
Confidence 45789995 555555556679999999999999999999999999999972 12221110 01111222234444444
Q ss_pred H---HHHHHHHHHhcCCceeEe--ehhchhhhhhhcc-hHHHHHHhhCCCEEEEcCcCCC-----CCCccHHHHHHHHHh
Q psy3752 669 N---SLALFDILNKSGIISHVM--SAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIGN-----PFFTTDTTAALRAAE 737 (1012)
Q Consensus 669 ~---~~~l~~~l~~~gi~a~~l--~~~~~~~~~~~~~-~~~l~~~L~~g~VPVi~G~~g~-----~~~s~D~~Aa~lA~~ 737 (1012)
+ ...+...|..+|+++..+ +..++....+..+ ...+..+|+.|.||||+++... ...+||++|+++|.+
T Consensus 80 q~~l~~~~~~~f~~~g~~~aqvLlT~~d~~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~ 159 (368)
T PRK13402 80 QGLLMATWSKLFLSHGFPAAQLLLTHGDLRDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAAL 159 (368)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHH
Confidence 3 344555699999998654 5555422111111 3678888999999999852211 112489999999999
Q ss_pred cCCceEEeeeccccccccCCcCCcCcccccccCH--HHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecCCc
Q psy3752 738 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS 805 (1012)
Q Consensus 738 l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~--~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~ 805 (1012)
++||.|+|+||||||||+||+.+|++++|+++++ +++.. +|+|.+|+.|+..|.++|++++|+||..|
T Consensus 160 l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~ 239 (368)
T PRK13402 160 ADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTA 239 (368)
T ss_pred hCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCc
Confidence 9999999999999999999999999999999985 44432 68899999999999999999999999999
Q ss_pred hhHHHHhcCCCcceEEEEe
Q psy3752 806 GALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 806 ~~i~~~l~Ge~~GT~I~~~ 824 (1012)
+.|.+++.|+..||+|.+.
T Consensus 240 ~~l~~~l~g~~~GT~i~~~ 258 (368)
T PRK13402 240 DIFNQLLKGQNPGTYFTPE 258 (368)
T ss_pred hHHHHHhcCCCCceEEecC
Confidence 9999999999999999875
No 41
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.94 E-value=1e-26 Score=251.76 Aligned_cols=226 Identities=18% Similarity=0.198 Sum_probs=169.1
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccccCCCcch-HHHHHHHHHHH-
Q psy3752 592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRST-ADYMGMLATII- 668 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 668 (1012)
+|+|+ +|++ +++....++.+.+.+++++|++++..|+++|||||| |...+.......+. .. .....+++.|+
T Consensus 2 iViK~--GGs~-i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~~~~~--~~~~~~~~~~~~Gq~ 76 (251)
T cd04242 2 IVVKV--GSSL-LTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEKRP--KTLPEKQALAAVGQS 76 (251)
T ss_pred EEEEe--CCCe-eeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhccCcCC--CchhHHHHHHHHhHH
Confidence 46774 4554 444444468999999999999999999999999987 34433322221111 12 22233334443
Q ss_pred -HHHHHHHHHHhcCCceeE--eehhchhhhhhhc-chHHHHHHhhCCCEEEEcCcCC-----CCCCccHHHHHHHHHhcC
Q psy3752 669 -NSLALFDILNKSGIISHV--MSAISIEKFLESY-IPLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAEIK 739 (1012)
Q Consensus 669 -~~~~l~~~l~~~gi~a~~--l~~~~~~~~~~~~-~~~~l~~~L~~g~VPVi~G~~g-----~~~~s~D~~Aa~lA~~l~ 739 (1012)
...+++.+|..+|+++.. ++..++....... ..+.+..+++.|+|||++++.. ....++|++|+++|.+++
T Consensus 77 ~l~~~~~~~l~~~Gi~~~q~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~ 156 (251)
T cd04242 77 LLMALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVN 156 (251)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcC
Confidence 345567779999999854 4444432111111 2467888899999999985211 123469999999999999
Q ss_pred CceEEeeeccccccccCCcCCcCcccccccC--HHHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecCCchh
Q psy3752 740 AEIILKATKVDGIYNSDPNKCLSAIIYKKIT--FDEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGA 807 (1012)
Q Consensus 740 Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~--~~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~ 807 (1012)
||.|+|+|||||||++||+.+|++++|++++ ++++.+ .|+|.+|+.|+..+.++|++++|+||..|++
T Consensus 157 Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~ 236 (251)
T cd04242 157 ADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDV 236 (251)
T ss_pred CCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 9999999999999999999999999999998 776543 5789899999999999999999999999999
Q ss_pred HHHHhcCCCcceEEE
Q psy3752 808 LKRVIEGKNEGTLVY 822 (1012)
Q Consensus 808 i~~~l~Ge~~GT~I~ 822 (1012)
+.++++|+..||+|.
T Consensus 237 i~~~l~g~~~GT~i~ 251 (251)
T cd04242 237 LLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHcCCCCCeEeC
Confidence 999999999999983
No 42
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.94 E-value=1.3e-26 Score=263.26 Aligned_cols=231 Identities=22% Similarity=0.237 Sum_probs=175.3
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchH-hhhhcccccCCCcchHHHHHHHHHH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATI 667 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1012)
.+++|+|+ |++.++++++.++.+.+.+++++|+++++.|+++||||||+-. ......... .+......+++++.
T Consensus 8 ~~~iVIKi---GGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGai~~g~~~l~l~~--~~~~~~~~qa~aav 82 (372)
T PRK05429 8 ARRIVVKV---GSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGAVAAGRERLGLPE--RPKTLAEKQAAAAV 82 (372)
T ss_pred CCEEEEEe---ChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccHhhhhHhhcCCCC--CCCchHHHHHHHHH
Confidence 45678994 5555555677899999999999999999999999999988411 111111111 11122223344433
Q ss_pred HH---HHHHHHHHHhcCCceeEe--ehhchhhhhhhcc-hHHHHHHhhCCCEEEEcCcCC-----CCCCccHHHHHHHHH
Q psy3752 668 IN---SLALFDILNKSGIISHVM--SAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAA 736 (1012)
Q Consensus 668 ~~---~~~l~~~l~~~gi~a~~l--~~~~~~~~~~~~~-~~~l~~~L~~g~VPVi~G~~g-----~~~~s~D~~Aa~lA~ 736 (1012)
++ ...+...|..+|+++..+ +..++.......+ ...+..+++.|.|||++++.. ....++|++|++||.
T Consensus 83 Gq~~L~~~~~~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~ 162 (372)
T PRK05429 83 GQSRLMQAYEELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVAN 162 (372)
T ss_pred hHHHHHHHHHHHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHH
Confidence 33 344566699999998654 5555543333344 467888899999999985211 123569999999999
Q ss_pred hcCCceEEeeeccccccccCCcCCcCcccccccCH--HHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecCC
Q psy3752 737 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIK 804 (1012)
Q Consensus 737 ~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~--~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~~ 804 (1012)
+++||.|+|+|||||||++||+.+|++++|+++++ +++.+ +|+|.+|+.|+..|.++|++++|+||..
T Consensus 163 ~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~ 242 (372)
T PRK05429 163 LVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGRE 242 (372)
T ss_pred HcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 99999999999999999999999999999999976 33322 5789999999999999999999999999
Q ss_pred chhHHHHhcCCCcceEEEEe
Q psy3752 805 SGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 805 ~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
|+++.+++.|+..||+|.+.
T Consensus 243 ~~~l~~~l~g~~~GT~i~~~ 262 (372)
T PRK05429 243 PDVLLRLLAGEAVGTLFLPQ 262 (372)
T ss_pred ccHHHHHhcCCCCCEEEeeC
Confidence 99999999999999999976
No 43
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.94 E-value=2e-26 Score=260.54 Aligned_cols=229 Identities=20% Similarity=0.199 Sum_probs=171.8
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHh-hhhcccccCCCcchHHHHHHHHHHHH
Q psy3752 591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNIC-RGISNKIQNIDRSTADYMGMLATIIN 669 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1012)
++|+| .|++.+++....++.+.+..++++|+++++.|+++|||||||..+ +...+.. -.+..+...+.+++.++
T Consensus 2 riVIK---iGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~g~~~lg~~--~~~~~l~~~qa~aa~Gq 76 (363)
T TIGR01027 2 RIVVK---VGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEALGLP--ERPKTLAEKQALAAVGQ 76 (363)
T ss_pred eEEEE---eccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhcCccccCCC--CCccchHHHHHHHHhCh
Confidence 35778 455555554445999999999999999999999999999997432 2222211 11222333344444444
Q ss_pred HHH---HHHHHHhcCCcee--Eeehhchhhhhhhcch-HHHHHHhhCCCEEEEcCcC-----CCCCCccHHHHHHHHHhc
Q psy3752 670 SLA---LFDILNKSGIISH--VMSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGI-----GNPFFTTDTTAALRAAEI 738 (1012)
Q Consensus 670 ~~~---l~~~l~~~gi~a~--~l~~~~~~~~~~~~~~-~~l~~~L~~g~VPVi~G~~-----g~~~~s~D~~Aa~lA~~l 738 (1012)
..+ +...|..+|+++. .++..++.......+. ..+..+|+.|.|||++.+. +....++|++|+++|.++
T Consensus 77 ~~l~~~~~~~l~~~Gi~~aqillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l 156 (363)
T TIGR01027 77 VRLMQLYEQLFSQYGIKVAQILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILV 156 (363)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHc
Confidence 443 4456999999973 3344444433333443 6778889999999998421 122346999999999999
Q ss_pred CCceEEeeeccccccccCCcCCcCcccccccCHH--HHH--h--------hhcCcccHHHHHHHHhCCCcEEEEecCCch
Q psy3752 739 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD--EVI--S--------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG 806 (1012)
Q Consensus 739 ~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~--e~~--~--------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~ 806 (1012)
+||.|+|+|||||||++||+.+|+|++|++++.. +.. . +|+|.+|+.|+..|.+.|++++|+|+..|+
T Consensus 157 ~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~ 236 (363)
T TIGR01027 157 GADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPE 236 (363)
T ss_pred CCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 9999999999999999999999999999999753 221 1 578999999999999999999999999999
Q ss_pred hHHHHhcCCCcceEEEEe
Q psy3752 807 ALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 807 ~i~~~l~Ge~~GT~I~~~ 824 (1012)
++.+++.|+.+||+|.+.
T Consensus 237 ~l~~~l~g~~~GT~i~~~ 254 (363)
T TIGR01027 237 KIADALEGAPVGTLFHAQ 254 (363)
T ss_pred HHHHHhcCCCCcEEEeeC
Confidence 999999999999999875
No 44
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.94 E-value=3e-26 Score=249.13 Aligned_cols=208 Identities=23% Similarity=0.299 Sum_probs=174.4
Q ss_pred chhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc---------cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy3752 613 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---------QNIDRSTADYMGMLATIINSLALFDILNKSGII 683 (1012)
Q Consensus 613 ~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~ 683 (1012)
.+.+++++++|+.+.+.|+++|||||||.......... ...+....+.....+.+.++.+++.+|.++|++
T Consensus 12 ~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 91 (248)
T cd02115 12 EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIK 91 (248)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36799999999999888999999999974443322211 123344455666666667888999999999999
Q ss_pred eeEeehhchhh---------hhhhcchHHHHHHhhCCCEEEEcCcCCC--------CCCccHHHHHHHHHhcCCceEEee
Q psy3752 684 SHVMSAISIEK---------FLESYIPLNAIKYLEEGKVVIFAGGIGN--------PFFTTDTTAALRAAEIKAEIILKA 746 (1012)
Q Consensus 684 a~~l~~~~~~~---------~~~~~~~~~l~~~L~~g~VPVi~G~~g~--------~~~s~D~~Aa~lA~~l~Ad~liil 746 (1012)
+..+++.+... ....++.+.+..+|+.|.|||++|+.+. .+.++|++|+.+|.+|+||+|+++
T Consensus 92 a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~ 171 (248)
T cd02115 92 AVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVIL 171 (248)
T ss_pred eEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEE
Confidence 99998876522 3455678899999999999999996543 346699999999999999999999
Q ss_pred eccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEE
Q psy3752 747 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821 (1012)
Q Consensus 747 TDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I 821 (1012)
|||||||++||+.+|++++|++++++|+.+ .|+|+.|+.++..+.++|++++|+|+..|+.+ +++.++..||+|
T Consensus 172 tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I 248 (248)
T cd02115 172 TDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248 (248)
T ss_pred ecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence 999999999999999999999999977765 78999999999999999999999999999999 999998899986
No 45
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.94 E-value=3.8e-26 Score=245.79 Aligned_cols=201 Identities=23% Similarity=0.305 Sum_probs=159.5
Q ss_pred cchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccc----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Q psy3752 612 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI----QNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 686 (1012)
Q Consensus 612 d~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~ 686 (1012)
+.+.+++++++|+.+.+.|+++|||||| |.....+.... ...+...++.+.......+..+++..|..+|+++++
T Consensus 13 ~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~ 92 (239)
T cd04261 13 SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAIS 92 (239)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 5678999999999999999999999998 42222222111 111233334433333344666788899999999999
Q ss_pred eehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCC------CC---ccHHHHHHHHHhcCCceEEeeec
Q psy3752 687 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FF---TTDTTAALRAAEIKAEIILKATK 748 (1012)
Q Consensus 687 l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~------~~---s~D~~Aa~lA~~l~Ad~liilTD 748 (1012)
+++.+.... +...+.+.+..++++|.|||++|+.|.+ ++ ++|++|+.+|.+++||.|+++||
T Consensus 93 l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~td 172 (239)
T cd04261 93 LTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTD 172 (239)
T ss_pred echhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeC
Confidence 998875221 2234668899999999999999975532 12 59999999999999999999999
Q ss_pred cccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 749 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 749 VdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
|||||++||+.+|++++|++++++|+.+ .|.+++|+.|+.+|.++|+|++|.|+++| + .||+|+
T Consensus 173 V~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~---------~-~gt~i~ 239 (239)
T cd04261 173 VDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSE---------E-PGTLIT 239 (239)
T ss_pred CCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCC---------C-CCcEeC
Confidence 9999999999999999999999988876 79999999999999999999999999987 3 699984
No 46
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.94 E-value=3.8e-26 Score=245.94 Aligned_cols=201 Identities=25% Similarity=0.333 Sum_probs=161.1
Q ss_pred cchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccc---c-CCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Q psy3752 612 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI---Q-NIDRSTADYMGMLATIINSLALFDILNKSGIISHV 686 (1012)
Q Consensus 612 d~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~ 686 (1012)
+.+.+++++++|+.+.+.|+++|||||| |.....+.... . ..+...++.+.++.+..++.+++..|.++|+++++
T Consensus 13 ~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~ 92 (239)
T cd04246 13 DIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAIS 92 (239)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEE
Confidence 5678999999999999899999999996 43332222211 1 11344455544444455777889999999999999
Q ss_pred eehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCC---CC---C---ccHHHHHHHHHhcCCceEEeeec
Q psy3752 687 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F---TTDTTAALRAAEIKAEIILKATK 748 (1012)
Q Consensus 687 l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~---~~---~---s~D~~Aa~lA~~l~Ad~liilTD 748 (1012)
+++.+.... +...+.+.+..++++|.|||++|+.|. +. + ++|++|+.+|.+++||+|+++||
T Consensus 93 l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~td 172 (239)
T cd04246 93 LTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTD 172 (239)
T ss_pred eccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEEC
Confidence 988875211 233467889999999999999997542 11 2 48999999999999999999999
Q ss_pred cccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 749 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 749 VdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
||||||+||+.+|++++|++++++|+.+ .|++++|+.|+++|.++|+|++|.|+++| + .||+|+
T Consensus 173 V~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~---------~-~gt~i~ 239 (239)
T cd04246 173 VDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSE---------N-PGTLIT 239 (239)
T ss_pred CCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCC---------C-CCcEeC
Confidence 9999999999999999999999988876 78999999999999999999999999986 3 699984
No 47
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=235.02 Aligned_cols=225 Identities=21% Similarity=0.232 Sum_probs=172.5
Q ss_pred HHHHHhhhhhhhcC-CCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCC------CcchHHHHHHHH
Q psy3752 593 VLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI------DRSTADYMGMLA 665 (1012)
Q Consensus 593 v~K~~~~g~~~~~~-~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~------~~~~~~~~~~~~ 665 (1012)
++|+ +|+.++.+ .+..++++.++++|.+|+. ..-.++|||||||++.+...... ++ .....-.....+
T Consensus 4 IlKl--GGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~-~~~~~~~~~s~~G~~~~~~a 78 (252)
T COG1608 4 ILKL--GGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEF-GLEGLKNYLSPLGFSLTHLA 78 (252)
T ss_pred EEEe--cceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHh-CccccccccCccchHHHHHH
Confidence 5664 55544443 5778899999999999985 21236899999997766544332 22 011111222223
Q ss_pred HHHHHHHHHHHHHhcCCceeEeehhchh---hhhhhcchHHHHHHhhCCCEEEEcC------cCCCCCCccHHHHHHHHH
Q psy3752 666 TIINSLALFDILNKSGIISHVMSAISIE---KFLESYIPLNAIKYLEEGKVVIFAG------GIGNPFFTTDTTAALRAA 736 (1012)
Q Consensus 666 ~~~~~~~l~~~l~~~gi~a~~l~~~~~~---~~~~~~~~~~l~~~L~~g~VPVi~G------~~g~~~~s~D~~Aa~lA~ 736 (1012)
+..-+..++..|.++|+.++...|.++. .....-..+.+.++++.|+|||++| ..|...+|+|.++.+||.
T Consensus 79 m~~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~ 158 (252)
T COG1608 79 MLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAK 158 (252)
T ss_pred HHHHHHHHHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHH
Confidence 3334566778899999999876676652 1122223678899999999999999 235567899999999999
Q ss_pred hcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCCcEEEEecCCchhHH
Q psy3752 737 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK 809 (1012)
Q Consensus 737 ~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~ 809 (1012)
.+++|+++|+|||||||+.||...|+++.++++....... +|||..|+.++....+++.+++++||.+|++|.
T Consensus 159 ~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~ 238 (252)
T COG1608 159 ELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIY 238 (252)
T ss_pred HhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHH
Confidence 9999999999999999999999999999999887743332 899999999998888999999999999999999
Q ss_pred HHhcCCCcceEEE
Q psy3752 810 RVIEGKNEGTLVY 822 (1012)
Q Consensus 810 ~~l~Ge~~GT~I~ 822 (1012)
++|+|+.+||+|.
T Consensus 239 ~~l~G~~vGT~I~ 251 (252)
T COG1608 239 RALRGENVGTRID 251 (252)
T ss_pred HHhcCCCCceEec
Confidence 9999999999985
No 48
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.93 E-value=2.6e-26 Score=249.49 Aligned_cols=220 Identities=19% Similarity=0.221 Sum_probs=172.6
Q ss_pred HHHHHHhhhhhhhcC--CCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCC-------CcchHHHHH
Q psy3752 592 AVLKAQQLGEALMKG--DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI-------DRSTADYMG 662 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~--~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~-------~~~~~~~~~ 662 (1012)
+|+| .|++++++ .+..++.+.++++++++++++ |+++|||||||++.+...... ++ ++..+....
T Consensus 2 iVIK---iGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~-g~~~g~~~~~~~~l~~~~ 75 (252)
T cd04241 2 IILK---LGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEY-GLPDGDGSFSAEGVAETH 75 (252)
T ss_pred EEEE---EeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHh-CCCcCCCchhhhhHHHHH
Confidence 3567 45555543 356789999999999999887 999999999986655333221 22 223333444
Q ss_pred HHHHHHHHHHHHHHHHhcCCceeEeehhchhh----hhhhcchHHHHHHhhCCCEEEEcCcCC------CCCCccHHHHH
Q psy3752 663 MLATIINSLALFDILNKSGIISHVMSAISIEK----FLESYIPLNAIKYLEEGKVVIFAGGIG------NPFFTTDTTAA 732 (1012)
Q Consensus 663 ~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~----~~~~~~~~~l~~~L~~g~VPVi~G~~g------~~~~s~D~~Aa 732 (1012)
.... ..+..+.++|..+|+++.++++.++.. .+..++.+.+.++|+.|.|||++|..+ ..++++|++|+
T Consensus 76 ~~~~-~ln~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~ 154 (252)
T cd04241 76 EAML-ELNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVV 154 (252)
T ss_pred HHHH-HHHHHHHHHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHH
Confidence 3332 344567888999999999999887522 245678899999999999999987321 23457999999
Q ss_pred HHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh------------hhcCcccHHHHHHHHhCCCcEEEE
Q psy3752 733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS------------KKLEIMDSTAFSFCRDQKLPIRVF 800 (1012)
Q Consensus 733 ~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~------------~G~~v~~~~aa~~a~~~gi~v~I~ 800 (1012)
.+|.+++||+|+++|||||||++|| |++++|++++++++.+ +|+|..|+.++..+.++|++++|+
T Consensus 155 ~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~ 231 (252)
T cd04241 155 ELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIF 231 (252)
T ss_pred HHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEE
Confidence 9999999999999999999999999 8899999998744321 588999999999999999999999
Q ss_pred ecCCchhHHHHhcCCCcceEE
Q psy3752 801 SIIKSGALKRVIEGKNEGTLV 821 (1012)
Q Consensus 801 ~g~~~~~i~~~l~Ge~~GT~I 821 (1012)
+|..|+++.+++.|+.+||+|
T Consensus 232 ~g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 232 NGDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred eCCCHHHHHHHHcCCCCceEC
Confidence 999999999999999999986
No 49
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.93 E-value=2.6e-25 Score=239.74 Aligned_cols=212 Identities=21% Similarity=0.294 Sum_probs=167.3
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhc--ccccCCCcchHHHHHHHHHHHH
Q psy3752 592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRSTADYMGMLATIIN 669 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 669 (1012)
+|+| .|+++++++. .+.+.++|++|+++.+ |++++||||||+.++.+. ....+++....+..++.+++++
T Consensus 33 ~ViK---iGGSvitdk~----~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln 104 (262)
T cd04255 33 NVVK---IGGQSIIDRG----AEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQN 104 (262)
T ss_pred EEEE---eccceecCCc----HHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 5788 5666665543 4689999999999876 789999999998886544 2234566667788888888888
Q ss_pred HHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCC------------CCCCccHHHHHHHHHh
Q psy3752 670 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------------NPFFTTDTTAALRAAE 737 (1012)
Q Consensus 670 ~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g------------~~~~s~D~~Aa~lA~~ 737 (1012)
..++...|..+|++++. . .+...+..+|+.|.|||++|+.+ .++.++|++|+++|.+
T Consensus 105 ~lv~~~~l~~~g~~~i~--~---------~~~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~ 173 (262)
T cd04255 105 AEMLATLLAKHGGSKVG--H---------GDLLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEV 173 (262)
T ss_pred HHHHHHHHHHcCCCccc--c---------ccHHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHH
Confidence 77776778888887631 1 22346888999999999999742 4677899999999999
Q ss_pred cCCceEEeeeccccccccCCcCCcCcccccccCHHHHHhh--hcCcccHHHHHHHH--hCCCcEEEEecCCchhHHHHhc
Q psy3752 738 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK--KLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIE 813 (1012)
Q Consensus 738 l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~~--G~~v~~~~aa~~a~--~~gi~v~I~~g~~~~~i~~~l~ 813 (1012)
++||.|+++|||||||++||+.+|++++|+++++.++.+. +..+++-.+...+. +..++++|+||..|+++.+++.
T Consensus 174 l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~ 253 (262)
T cd04255 174 IGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALR 253 (262)
T ss_pred hCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHc
Confidence 9999999999999999999999999999999999877652 22223434444443 3336999999999999999999
Q ss_pred CCCcceEEE
Q psy3752 814 GKNEGTLVY 822 (1012)
Q Consensus 814 Ge~~GT~I~ 822 (1012)
|+.+||+|.
T Consensus 254 g~~~GT~i~ 262 (262)
T cd04255 254 GEHVGTIIR 262 (262)
T ss_pred CCCCceEeC
Confidence 999999983
No 50
>KOG1154|consensus
Probab=99.93 E-value=9.3e-26 Score=225.16 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=174.6
Q ss_pred HHHHHHHHHhhhhhhhcC-CCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc-hHhhhh---ccccc-----CC-Ccch
Q psy3752 589 YSLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NICRGI---SNKIQ-----NI-DRST 657 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~-~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG-~~~~~~---~~~~~-----~~-~~~~ 657 (1012)
..++|+| .|++++++ +...+...++..|++++++|++.|++++||+||| .+.++. ..... .+ +...
T Consensus 9 a~rIVVK---LGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~ 85 (285)
T KOG1154|consen 9 AYRIVVK---LGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSE 85 (285)
T ss_pred ceEEEEE---ecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCccc
Confidence 3468899 67777765 4455889999999999999999999999999996 222221 11110 01 2223
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhcCCce--eEeehhchhhhhhhcc-hHHHHHHhhCCCEEEEcCcCC-----CCCC-
Q psy3752 658 ADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIG-----NPFF- 725 (1012)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~---l~~~gi~a--~~l~~~~~~~~~~~~~-~~~l~~~L~~g~VPVi~G~~g-----~~~~- 725 (1012)
.....+.++.+++.+|+-| |..+|+.. +.++-.|+..--...| ...+.++|..|.|||+..... .++-
T Consensus 86 l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D 165 (285)
T KOG1154|consen 86 LAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGD 165 (285)
T ss_pred hhhHHHHHHhCcchHHHHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCC
Confidence 4555566666777777776 88998876 6667667644333333 357888999999999965221 1111
Q ss_pred --ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHH-h----------hhcCcccHHHHHHHHh
Q psy3752 726 --TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFCRD 792 (1012)
Q Consensus 726 --s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~-~----------~G~~v~~~~aa~~a~~ 792 (1012)
.||++||.+|..++||+||++|||||+||.+|.. ..+++|+..+..+-. . +|||-.|+.||..|..
T Consensus 166 ~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~ 244 (285)
T KOG1154|consen 166 SSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALN 244 (285)
T ss_pred CCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhc
Confidence 1999999999999999999999999999977653 456778776654332 1 7999999999999999
Q ss_pred CCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 793 QKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 793 ~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
.|++|+|+||..|++|.+++.|..+||.|...
T Consensus 245 ~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 245 AGVSVIITNGDAPENITDIVEGKKVGTFFEQL 276 (285)
T ss_pred CCceEEEeCCCChHHHHHHHhhhhhhhhhhhc
Confidence 99999999999999999999999999998643
No 51
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.92 E-value=2.3e-24 Score=247.42 Aligned_cols=332 Identities=17% Similarity=0.200 Sum_probs=232.5
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccc-----------------
Q psy3752 592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKI----------------- 650 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~----------------- 650 (1012)
+|.|+ +|+| .-+.+.+.++++.|.+..+.|.++|+|+|++ +.+..+....
T Consensus 4 iV~KF--GGTS-------va~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~ 74 (447)
T COG0527 4 IVQKF--GGTS-------VADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIAS 74 (447)
T ss_pred EEEEe--CCcc-------cCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 46676 5554 3567889999999999888899999999983 3333222210
Q ss_pred -cCCCc--------------------------chHHHHHHHHHHH--HHHHHHHHHHhcCCceeEeehhchhhh------
Q psy3752 651 -QNIDR--------------------------STADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF------ 695 (1012)
Q Consensus 651 -~~~~~--------------------------~~~~~~~~~~~~~--~~~~l~~~l~~~gi~a~~l~~~~~~~~------ 695 (1012)
...++ .+.....+++.|+ ++.+|+.+|+..|+++..+++++....
T Consensus 75 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~ 154 (447)
T COG0527 75 ELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHG 154 (447)
T ss_pred HHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCccc
Confidence 00111 3455666666665 688899999999999999999876322
Q ss_pred ---hhhcchHH-HHHHhhCCCEEEEcCcCCCCC---Cc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcC
Q psy3752 696 ---LESYIPLN-AIKYLEEGKVVIFAGGIGNPF---FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLS 762 (1012)
Q Consensus 696 ---~~~~~~~~-l~~~L~~g~VPVi~G~~g~~~---~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~ 762 (1012)
+....... +..+++.|.|||++||+|... .+ +|++|+.||..|+||++.||||||||||+|||..|+
T Consensus 155 ~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~ 234 (447)
T COG0527 155 NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPD 234 (447)
T ss_pred ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCc
Confidence 22334445 788899999999999998532 22 999999999999999999999999999999999999
Q ss_pred cccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEee---ehhh------h
Q psy3752 763 AIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY---IMII------S 830 (1012)
Q Consensus 763 a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~---~~~~------~ 830 (1012)
|++|++++|+|+.+ .|+++.|++|+++|.+++||++|.|.++|+ ..||+|.+.. ...+ +
T Consensus 235 Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~~~~~v~gIa~~~ 305 (447)
T COG0527 235 ARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPD---------APGTLITAETESDEPVVKGIALDD 305 (447)
T ss_pred ceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCC---------CCceEEecCCcCCCCceEEEEeCC
Confidence 99999999999988 899999999999999999999999999873 4799999762 1111 1
Q ss_pred h--hhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccc------cceEEEecCcccc-------------------ccceee
Q psy3752 831 D--IKKNTKQKMLNTIKILKENLKKVRTGRANIGML------DNIQVKYHEHLTK-------------------LLKIAN 883 (1012)
Q Consensus 831 ~--i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l------~~i~V~~~g~~~~-------------------l~~~a~ 883 (1012)
+ .+.-....|......+.+-|.-+.-...++.++ +++...+.+...+ -.++|-
T Consensus 306 ~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~ 385 (447)
T COG0527 306 NVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLAL 385 (447)
T ss_pred CeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeE
Confidence 1 111123445555556666677777777887776 2333333333211 124444
Q ss_pred EeecCCceEEEeecCcccHHHHHHHHHhcCCCCCcccC-CCeEEEeCCCCCHHHHHHHHHHHHHHH
Q psy3752 884 ITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQ-GNIIYVSIPPLTKERREEIVKLIKNIT 948 (1012)
Q Consensus 884 i~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~p~~~-~~~i~v~iP~~t~E~R~~l~k~~k~~~ 948 (1012)
|++-+..+- -.+.....+.+|+.+.+.|+--... .-.|.+-|+ ++..++.++.+.+.+
T Consensus 386 vsiVG~gm~----~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~---~~~~~~av~~LH~~~ 444 (447)
T COG0527 386 VSIVGAGMR----SNPGVAARIFQALAEENINIIMISSSEISISFVVD---EKDAEKAVRALHEAF 444 (447)
T ss_pred EEEEccccc----cCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEc---cHHHHHHHHHHHHHH
Confidence 444443321 1356788888999888887765553 346666664 455555566555544
No 52
>PRK08841 aspartate kinase; Validated
Probab=99.92 E-value=1.3e-24 Score=247.86 Aligned_cols=215 Identities=22% Similarity=0.273 Sum_probs=167.8
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccccCC-CcchHHHHHHHH
Q psy3752 591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNI-DRSTADYMGMLA 665 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~~~-~~~~~~~~~~~~ 665 (1012)
++|+|+ +|++ .-+.+.+++++++|+.+.+.|+++|+||||| +.+.+........ ++.+.+.....+
T Consensus 3 ~~V~Kf--GGts-------v~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~G 73 (392)
T PRK08841 3 LIVQKF--GGTS-------VGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAG 73 (392)
T ss_pred eEEEeE--Cccc-------CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHH
Confidence 346676 4444 3567889999999999999999999999984 4443322221111 222333333333
Q ss_pred HHHHHHHHHHHHHhcCCceeEeehhchhh---------hhhhcchHHHHHHhhCCCEEEEcCcCCC---CCC------cc
Q psy3752 666 TIINSLALFDILNKSGIISHVMSAISIEK---------FLESYIPLNAIKYLEEGKVVIFAGGIGN---PFF------TT 727 (1012)
Q Consensus 666 ~~~~~~~l~~~l~~~gi~a~~l~~~~~~~---------~~~~~~~~~l~~~L~~g~VPVi~G~~g~---~~~------s~ 727 (1012)
......+++.+|++.|+++.++++.+... .+..++.+.+..+++.|.|||++||.|. +.. .+
T Consensus 74 E~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggs 153 (392)
T PRK08841 74 EQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGS 153 (392)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCCh
Confidence 33467778888999999999999987521 1233456788899999999999998762 222 38
Q ss_pred HHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCC
Q psy3752 728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIK 804 (1012)
Q Consensus 728 D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~ 804 (1012)
|++|+.+|..|+||.|++||||||||++||+.+|+|++|++++++|+.+ .|++++|+.|+++|.++|+|++|.|+++
T Consensus 154 D~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~ 233 (392)
T PRK08841 154 DTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFE 233 (392)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCC
Confidence 9999999999999999999999999999999999999999999998776 7999999999999999999999999986
Q ss_pred chhHHHHhcCCCcceEEEEe
Q psy3752 805 SGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 805 ~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
+ ..||+|...
T Consensus 234 ~----------~~GT~I~~~ 243 (392)
T PRK08841 234 V----------GEGTLIKGE 243 (392)
T ss_pred C----------CCCeEEEec
Confidence 4 249999643
No 53
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.92 E-value=8.7e-25 Score=233.10 Aligned_cols=190 Identities=24% Similarity=0.276 Sum_probs=155.2
Q ss_pred cchhhHhHHHHHHHHHhCCCeEEEEEccchH-hhhhcccccCCCcchHHHHHHHHHH--HHHHHHHHHHHhcCCceeEee
Q psy3752 612 NSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATI--INSLALFDILNKSGIISHVMS 688 (1012)
Q Consensus 612 d~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~a~~l~ 688 (1012)
+++.+++++++|+.+ +.|+++|||||||.. ...+.... .+++.| .+..+++.+|.++|+++..++
T Consensus 13 ~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~-----------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~ 80 (227)
T cd04234 13 SAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA-----------LLLSFGERLSARLLAAALRDRGIKARSLD 80 (227)
T ss_pred CHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence 456899999999999 889999999998522 22111111 333344 356778888999999999999
Q ss_pred hhchhh---------hhhhcchHHHHHHhhC-CCEEEEcCcCCC---CCC------ccHHHHHHHHHhcCCceEEeeecc
Q psy3752 689 AISIEK---------FLESYIPLNAIKYLEE-GKVVIFAGGIGN---PFF------TTDTTAALRAAEIKAEIILKATKV 749 (1012)
Q Consensus 689 ~~~~~~---------~~~~~~~~~l~~~L~~-g~VPVi~G~~g~---~~~------s~D~~Aa~lA~~l~Ad~liilTDV 749 (1012)
+.++.. .....+.+.+..+++. |.|||++|+.|. +.. ++|++|+.+|.+|+||+|+++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV 160 (227)
T cd04234 81 ARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDV 160 (227)
T ss_pred HHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECC
Confidence 887532 1344567889999999 999999997652 222 389999999999999999999999
Q ss_pred ccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 750 DGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 750 dGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
|||||+||+.+|++++|++++++|+.+ .|++++++.|+++|.++|++++|.|+.+|+ ..||+|+
T Consensus 161 ~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~ 227 (227)
T cd04234 161 DGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT 227 (227)
T ss_pred CccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence 999999999999999999999998876 688999999999999999999999999874 3599984
No 54
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.92 E-value=6.6e-25 Score=238.59 Aligned_cols=223 Identities=22% Similarity=0.248 Sum_probs=167.6
Q ss_pred HHHHHHhhhhhhhcCC---CCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccccCCCcchHHHHHHH
Q psy3752 592 AVLKAQQLGEALMKGD---AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGML 664 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~~---~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1012)
+|+++ +|.++...+ ....+...++..|++|+.+.+.|++++||||+| +.+++........++.+++.+...
T Consensus 2 ivial--gGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~ 79 (308)
T cd04235 2 IVVAL--GGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAM 79 (308)
T ss_pred EEEEe--cHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcch
Confidence 45666 788887654 356788999999999999999999999999997 777765544222334455555555
Q ss_pred HHHHHHHHHH----HHHHhcCCceeEeehhchhhh---------------------------------------------
Q psy3752 665 ATIINSLALF----DILNKSGIISHVMSAISIEKF--------------------------------------------- 695 (1012)
Q Consensus 665 ~~~~~~~~l~----~~l~~~gi~a~~l~~~~~~~~--------------------------------------------- 695 (1012)
.+|+.+++|+ ..|...|++....+......+
T Consensus 80 ~~G~ig~~~~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv 159 (308)
T cd04235 80 SQGMIGYMLQQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence 5555555544 447887876644443221000
Q ss_pred ------hhhcchHHHHHHhhCCCEEEEcCcCCCCCCc-------------cHHHHHHHHHhcCCceEEeeeccccccccC
Q psy3752 696 ------LESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIYNSD 756 (1012)
Q Consensus 696 ------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s-------------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~d 756 (1012)
.+-++.+.+..+|++|+|||++|+.|+|.++ +|++|+++|..++||.|+++|||||||+++
T Consensus 160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~ 239 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence 1123457788899999999999988877643 499999999999999999999999999976
Q ss_pred CcCCcCcccccccCHHHHHh--------hhcCcccHHHHH-HHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 757 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFS-FCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 757 P~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~-~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
| .|++++|++++++++.+ .|+|.+|+.|+. ++.+.+.+++|++ ++++.++|.|+ .||+|.
T Consensus 240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 5 48999999999988754 588999998774 4555567888876 67799999998 799983
No 55
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.92 E-value=2.4e-24 Score=228.14 Aligned_cols=167 Identities=42% Similarity=0.764 Sum_probs=140.5
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~ 80 (1012)
+|||.+.|++..++++|+++||.|+||+|++||.+|+||.||++||+++||+..|+|.++.+|+++++|+.++...+...
T Consensus 34 l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~ 113 (211)
T PRK09481 34 VSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVARGESRLMMHRIEKDWYSL 113 (211)
T ss_pred CCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999998888999999999999999999999999999999999999988899999999999999977665544322
Q ss_pred HHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccccc-CCCchhHHHHHH
Q psy3752 81 LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLS-KSASPLIKYAER 159 (1012)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~-~~~P~L~aw~~r 159 (1012)
.... ... .....+.....+.+.|..+|++|++++||+|+++|+||+++++++.++...+.++. +.||+|.+|+++
T Consensus 114 ~~~~-~~~---~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 189 (211)
T PRK09481 114 MNKI-VNG---SASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRLPVLGIELSGPGAKELKGYMTR 189 (211)
T ss_pred HHHH-hcC---CHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHH
Confidence 2111 111 12233556677888999999999999999999999999999999988876676654 568999999999
Q ss_pred HhcCCccccccc
Q psy3752 160 IFSRPSYMESLT 171 (1012)
Q Consensus 160 i~~rp~~~~~lt 171 (1012)
+.+||+|++++.
T Consensus 190 ~~~rp~~~~~~~ 201 (211)
T PRK09481 190 VFERDSFLASLT 201 (211)
T ss_pred HhccHHHHHHcC
Confidence 999999998876
No 56
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.92 E-value=1.9e-24 Score=232.90 Aligned_cols=202 Identities=23% Similarity=0.331 Sum_probs=156.9
Q ss_pred ccchhhHhHHHHHHHHHhCCCeEEEEEcc-----chH----hhhhccc-ccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q psy3752 611 INSSIIKNIISEISEIVSCGIELAIVIGG-----GNI----CRGISNK-IQNIDRSTADYMGMLATIINSLALFDILNKS 680 (1012)
Q Consensus 611 id~~~i~~ia~~I~~l~~~G~~vvIVhGG-----G~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 680 (1012)
-+++.+++++++|+.+.+.|+++|||||| |.. ..+.... ....++..++.+........+..++++|+++
T Consensus 12 ~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~ 91 (244)
T cd04260 12 STKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIISAVVLTSTLRAQ 91 (244)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 35667899999999999999988888753 211 1111111 1123333444443333334566789999999
Q ss_pred CCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCC---CC---C---ccHHHHHHHHHhcCCce
Q psy3752 681 GIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F---TTDTTAALRAAEIKAEI 742 (1012)
Q Consensus 681 gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~---~~---~---s~D~~Aa~lA~~l~Ad~ 742 (1012)
|++++.+++.+...+ +..++.+.+..+++.|.|||++|+.|. +. + ++|++|+.+|.+|+|++
T Consensus 92 Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~ 171 (244)
T cd04260 92 GLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEY 171 (244)
T ss_pred CCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCE
Confidence 999999988765221 234577889999999999999997442 22 2 38999999999999999
Q ss_pred EEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcce
Q psy3752 743 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 819 (1012)
Q Consensus 743 liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT 819 (1012)
|+++|||||||++||+.+|++++|++++++|+.+ .|.+++|+.|+++|.++|++++|.|+++| + .||
T Consensus 172 l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~---------~-~gt 241 (244)
T cd04260 172 VEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSE---------N-PGT 241 (244)
T ss_pred EEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCC---------C-CCC
Confidence 9999999999999999999999999999988876 78899999999999999999999999876 3 599
Q ss_pred EEE
Q psy3752 820 LVY 822 (1012)
Q Consensus 820 ~I~ 822 (1012)
+|+
T Consensus 242 ~i~ 244 (244)
T cd04260 242 LIT 244 (244)
T ss_pred EeC
Confidence 984
No 57
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.92 E-value=2.4e-24 Score=235.97 Aligned_cols=224 Identities=21% Similarity=0.242 Sum_probs=169.5
Q ss_pred HHHHHHHhhhhhhhcCC-CC--cccchhhHhHHHHHHHHHhCCCeEEEEEccchHh----hhhcccccCCCcchHHHHHH
Q psy3752 591 LAVLKAQQLGEALMKGD-AY--NINSSIIKNIISEISEIVSCGIELAIVIGGGNIC----RGISNKIQNIDRSTADYMGM 663 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~-~~--~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~----~~~~~~~~~~~~~~~~~~~~ 663 (1012)
++|+|+ +|++++..+ .. .++...++.+|++|+.|.+.|+++|||||||... ++........++.+++.+..
T Consensus 2 riVikl--GgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A 79 (310)
T TIGR00746 2 RVVVAL--GGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGA 79 (310)
T ss_pred eEEEEE--CHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHH
Confidence 467786 777777432 22 4668899999999999999999999999997443 32222222244556788999
Q ss_pred HHHHHHHHHHHHHHH----hcCCce--------eEeehhc--hhhh----------------------------------
Q psy3752 664 LATIINSLALFDILN----KSGIIS--------HVMSAIS--IEKF---------------------------------- 695 (1012)
Q Consensus 664 ~~~~~~~~~l~~~l~----~~gi~a--------~~l~~~~--~~~~---------------------------------- 695 (1012)
..+++.+++++.+|. .+|+.. +.++..| +...
T Consensus 80 ~~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rr 159 (310)
T TIGR00746 80 MSQGMIGYMLQQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRR 159 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceE
Confidence 999988888877766 777443 3334333 2100
Q ss_pred -------hhhcchHHHHHHhhCCCEEEEcCcCCCCC-------------CccHHHHHHHHHhcCCceEEeeecccccccc
Q psy3752 696 -------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYNS 755 (1012)
Q Consensus 696 -------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~-------------~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~ 755 (1012)
.+.++.+.+..+|++|.++|.+|+.|.|. +++|++|+++|.+++||+|+++|||||||++
T Consensus 160 vv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~ 239 (310)
T TIGR00746 160 VVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN 239 (310)
T ss_pred eecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC
Confidence 11245678899999999777666666554 2699999999999999999999999999997
Q ss_pred CCcCCcCcccccccCHHHHHh--------hhcCcccHHHH-HHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 756 DPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 756 dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
++ +|++++|++++.+++.. .|+|.+|+.|| +.+.+++.+++|++ ++++.++|.|+ .||+|.
T Consensus 240 ~~--~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 240 YG--KPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CC--CCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 53 58899999999887755 48999999888 66666678999987 67899999999 899986
No 58
>PRK06635 aspartate kinase; Reviewed
Probab=99.91 E-value=1.8e-23 Score=243.02 Aligned_cols=278 Identities=23% Similarity=0.296 Sum_probs=203.0
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc-hHh---hhhcccccCC-CcchHHHHHHHH
Q psy3752 591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NIC---RGISNKIQNI-DRSTADYMGMLA 665 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG-~~~---~~~~~~~~~~-~~~~~~~~~~~~ 665 (1012)
++|+|+ +|+++ -+.+.+++++++|+.+.+.|+++||||||| ... .......... +....+.+...+
T Consensus 3 ~iViK~--GGs~l-------~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~G 73 (404)
T PRK06635 3 LIVQKF--GGTSV-------GDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTG 73 (404)
T ss_pred eEEEeE--CCccc-------CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhh
Confidence 457785 44443 356789999999999998999999999974 222 2222111111 333444444444
Q ss_pred HHHHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCC---C---C---cc
Q psy3752 666 TIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TT 727 (1012)
Q Consensus 666 ~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~---~---~---s~ 727 (1012)
...++.+++.+|+.+|++++++++.++... +...+.+.+..+++.|.|||++|+.|.+ . + ++
T Consensus 74 e~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~s 153 (404)
T PRK06635 74 EQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGS 153 (404)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCCh
Confidence 445777899999999999999998876321 2345678899999999999999976532 1 2 48
Q ss_pred HHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCC
Q psy3752 728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIK 804 (1012)
Q Consensus 728 D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~ 804 (1012)
|++|+++|..++||.|++||||||||++||+.+|++++|++++++|+.+ .|++++++.|+.++.++|++++|.|+++
T Consensus 154 D~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~ 233 (404)
T PRK06635 154 DTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS 233 (404)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCC
Confidence 9999999999999999999999999999999999999999999998877 7999999999999999999999999886
Q ss_pred chhHHHHhcCCCcceEEEEeeehhhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeE
Q psy3752 805 SGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANI 884 (1012)
Q Consensus 805 ~~~i~~~l~Ge~~GT~I~~~~~~~~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i 884 (1012)
+ ..||+|...... .| ....+..|. -..+++.|
T Consensus 234 ~----------~~gT~i~~~~~~-----------~~-------------------~~~~i~~I~--------~~~~v~~I 265 (404)
T PRK06635 234 D----------NPGTLITGEEEE-----------IM-------------------EQPVVTGIA--------FDKDEAKV 265 (404)
T ss_pred C----------CCCCEEeeCCcc-----------cc-------------------ccCceEEEE--------ecCCeEEE
Confidence 4 359999764320 00 001122222 24667888
Q ss_pred eecCCceEEEeecCcccHHHHHHHHHhcCCCCCcccCC------CeEEEeCCC
Q psy3752 885 TLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQG------NIIYVSIPP 931 (1012)
Q Consensus 885 ~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~p~~~~------~~i~v~iP~ 931 (1012)
++.+ -+-.+..+..|-+++.+++.++.-...+ ..+.+.+|.
T Consensus 266 sv~g------~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~ 312 (404)
T PRK06635 266 TVVG------VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR 312 (404)
T ss_pred EECC------CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH
Confidence 8765 1335678889999999888766533222 467777753
No 59
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.91 E-value=4.1e-24 Score=233.35 Aligned_cols=200 Identities=17% Similarity=0.212 Sum_probs=161.3
Q ss_pred hHHHHHHHHHhCCCeEEEEEccchHhhhhcccc---c-------C-----CCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3752 618 NIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q-------N-----IDRSTADYMGMLATIINSLALFDILNKSGI 682 (1012)
Q Consensus 618 ~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~---~-------~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi 682 (1012)
.++.+|+.+...|.++|||||||.+........ . + .++.+++...++.. ..+..+.++|.++|+
T Consensus 16 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~-~ln~~lv~~L~~~Gv 94 (268)
T PRK14058 16 DALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMA-LINKQLVERLQSLGV 94 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence 568999999899999999999986655433221 1 1 14445555555545 556666779999999
Q ss_pred ceeEeehhchhhh--------------------------hhhcchHHHHHHhhCCCEEEEcCcC----CC-CCCccHHHH
Q psy3752 683 ISHVMSAISIEKF--------------------------LESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTTA 731 (1012)
Q Consensus 683 ~a~~l~~~~~~~~--------------------------~~~~~~~~l~~~L~~g~VPVi~G~~----g~-~~~s~D~~A 731 (1012)
+++++++.+.+.+ +..++.+.+..++++|.|||++|.. |. .++++|++|
T Consensus 95 ~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A 174 (268)
T PRK14058 95 NAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAA 174 (268)
T ss_pred CccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHH
Confidence 9999999875221 3456789999999999999999832 11 135699999
Q ss_pred HHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-----hhcCcccHHHHHHHHhCCC-cEEEEecCCc
Q psy3752 732 ALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIKS 805 (1012)
Q Consensus 732 a~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-----~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~ 805 (1012)
+.+|.+++||+|+|+|||||||++||+ ++++|++++.+++.+ +|+|..|+.++..+.++|+ +++|++|..|
T Consensus 175 ~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~ 251 (268)
T PRK14058 175 AAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVD 251 (268)
T ss_pred HHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 999999999999999999999999984 478999999887655 6999999999999999999 8999999999
Q ss_pred hhHHHHhcCCCcceEEEE
Q psy3752 806 GALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 806 ~~i~~~l~Ge~~GT~I~~ 823 (1012)
+++.++|+|+ ||+|.+
T Consensus 252 ~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 252 DPISAALAGE--GTVIVN 267 (268)
T ss_pred chHHHHhCCC--ceEEec
Confidence 9999999886 999975
No 60
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.91 E-value=6e-24 Score=246.78 Aligned_cols=203 Identities=22% Similarity=0.242 Sum_probs=161.3
Q ss_pred ccchhhHhHHHHHHHHHhCCCeEEEEEccch-Hhhhhcccc-----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCce
Q psy3752 611 INSSIIKNIISEISEIVSCGIELAIVIGGGN-ICRGISNKI-----QNIDRSTADYMGMLATIINSLALFDILNKSGIIS 684 (1012)
Q Consensus 611 id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a 684 (1012)
-+.+.+++++++|+.+.+.|++++||||||. ....+.... ...+....+.+...+...++.+++.+|+++|+++
T Consensus 13 ~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a 92 (401)
T TIGR00656 13 GSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKA 92 (401)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCce
Confidence 3567899999999999889999999999952 111111111 1122333444555444457888999999999999
Q ss_pred eEeehhchhh---------hhhhcch-HHHHHHhhCCCEEEEcCcCCC--CC-C------ccHHHHHHHHHhcCCceEEe
Q psy3752 685 HVMSAISIEK---------FLESYIP-LNAIKYLEEGKVVIFAGGIGN--PF-F------TTDTTAALRAAEIKAEIILK 745 (1012)
Q Consensus 685 ~~l~~~~~~~---------~~~~~~~-~~l~~~L~~g~VPVi~G~~g~--~~-~------s~D~~Aa~lA~~l~Ad~lii 745 (1012)
+.+++.+... .+...+. +.+..+++.|.|||++|+.|. .+ . ++|++|+.+|..|+||.|++
T Consensus 93 ~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i 172 (401)
T TIGR00656 93 IWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDI 172 (401)
T ss_pred EEeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEE
Confidence 9998776421 1223344 789999999999999997662 12 1 26999999999999999999
Q ss_pred eeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 746 ATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 746 lTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
||||||||++||+.+|+++++++++++|+.+ .|++++|++|+.+|.++++|++|.|+++|+ .||+|.
T Consensus 173 ~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~ 242 (401)
T TIGR00656 173 YTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLIT 242 (401)
T ss_pred EECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEE
Confidence 9999999999999999999999999999887 799999999999999999999999999873 489996
Q ss_pred E
Q psy3752 823 E 823 (1012)
Q Consensus 823 ~ 823 (1012)
+
T Consensus 243 ~ 243 (401)
T TIGR00656 243 N 243 (401)
T ss_pred e
Confidence 5
No 61
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.91 E-value=1.9e-23 Score=220.17 Aligned_cols=214 Identities=19% Similarity=0.192 Sum_probs=177.3
Q ss_pred CCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchH---hhhhccccc----C---CCcchHHHHHHHHHHHHHHHHHH
Q psy3752 606 GDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI---CRGISNKIQ----N---IDRSTADYMGMLATIINSLALFD 675 (1012)
Q Consensus 606 ~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~---~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~l~~ 675 (1012)
|+..+.+++...+++++|+.|+..|.++|||||||.. .+....... + .++.+++...++..|..+..+++
T Consensus 10 GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iva 89 (265)
T COG0548 10 GGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIVA 89 (265)
T ss_pred CceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567778999999999999999999999999944 333333322 2 27788999999999999999999
Q ss_pred HHHhcCCceeEeehhchhhh------------------hhhcchHHHHHHhhCCCEEEEcC-c---CCC-CCCccHHHHH
Q psy3752 676 ILNKSGIISHVMSAISIEKF------------------LESYIPLNAIKYLEEGKVVIFAG-G---IGN-PFFTTDTTAA 732 (1012)
Q Consensus 676 ~l~~~gi~a~~l~~~~~~~~------------------~~~~~~~~l~~~L~~g~VPVi~G-~---~g~-~~~s~D~~Aa 732 (1012)
.|..+|..++++++.|.+.+ ++.+|+..+..++++|.|||+++ + .|. -++++|++|+
T Consensus 90 ~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~ 169 (265)
T COG0548 90 RLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAG 169 (265)
T ss_pred HHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHH
Confidence 99999999999999885221 56778999999999999999997 2 222 2466999999
Q ss_pred HHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCC-cEEEEecCC
Q psy3752 733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIK 804 (1012)
Q Consensus 733 ~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~ 804 (1012)
.+|.+|+|++|+++|||+|||+++|+ + .+|++++.+++.+ .|+|++++.+|..|.+.|+ +++|+||+.
T Consensus 170 ~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~ 245 (265)
T COG0548 170 ALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRV 245 (265)
T ss_pred HHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCC
Confidence 99999999999999999999998875 3 6788888877655 5899999999999999999 799999999
Q ss_pred chhHHH-HhcCCCcceEEEE
Q psy3752 805 SGALKR-VIEGKNEGTLVYE 823 (1012)
Q Consensus 805 ~~~i~~-~l~Ge~~GT~I~~ 823 (1012)
++.+.. ++.+..+||.|.+
T Consensus 246 ~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 246 PHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred cchHHHHHhcCCCcceEecC
Confidence 999765 5677789999863
No 62
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.90 E-value=1.6e-23 Score=256.62 Aligned_cols=235 Identities=18% Similarity=0.175 Sum_probs=177.8
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhccccc----C----CCcchHH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQ----N----IDRSTAD 659 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~~----~----~~~~~~~ 659 (1012)
.+++|+| .|+++++++++.++.+.+.+++++|+.+++.|+++|||+|| |...+....... + ..+....
T Consensus 7 ~~~iViK---iGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (715)
T TIGR01092 7 VKRIVVK---VGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPEL 83 (715)
T ss_pred CCEEEEE---eCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchH
Confidence 4678999 56666666667899999999999999999999999997776 333332222110 0 1233444
Q ss_pred HHHHHHHHHHHHHHHHH---HHhcCCce--eEeehhchhhhhh-hcchHHHHHHhhCCCEEEEcCcCCCC----------
Q psy3752 660 YMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLE-SYIPLNAIKYLEEGKVVIFAGGIGNP---------- 723 (1012)
Q Consensus 660 ~~~~~~~~~~~~~l~~~---l~~~gi~a--~~l~~~~~~~~~~-~~~~~~l~~~L~~g~VPVi~G~~g~~---------- 723 (1012)
..+++++.+++.++..| |..+++.+ +.++..++..... ......+..+|+.|.||||+++....
T Consensus 84 ~~qa~aa~gq~~L~~~y~~~f~~~~i~~aQ~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~ 163 (715)
T TIGR01092 84 DGKACAAVGQSGLMALYETMFTQLDITAAQILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQ 163 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeEEEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCccccccccccccc
Confidence 55666666666666555 88888876 3444444432222 23457888999999999998622110
Q ss_pred --CCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHH---h--------hhcCcccHHHHHHH
Q psy3752 724 --FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI---S--------KKLEIMDSTAFSFC 790 (1012)
Q Consensus 724 --~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~---~--------~G~~v~~~~aa~~a 790 (1012)
+.++|++|++||.+++||+|+++|||||||++||+ +|++++|++++..+.. . +|||..|+.|+..|
T Consensus 164 g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a 242 (715)
T TIGR01092 164 GIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWA 242 (715)
T ss_pred ceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHH
Confidence 45699999999999999999999999999999996 6999999988653221 1 68999999999999
Q ss_pred HhCCCcEEEEecCCchhHHHHhcCCCcceEEEEeeeh
Q psy3752 791 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIM 827 (1012)
Q Consensus 791 ~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~~ 827 (1012)
.++|++++|+||..+++|.+++.|+..||+|.+..+|
T Consensus 243 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 243 AYGGTPVIIASGTAPKNITKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred HHCCCeEEEeCCCCcchHHHHhcCCCCceEecccchh
Confidence 9999999999999999999999999999999877554
No 63
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.90 E-value=2.2e-23 Score=226.01 Aligned_cols=225 Identities=21% Similarity=0.223 Sum_probs=172.6
Q ss_pred HHHHHHHhhhhhhhcCCCCcccc---hhhHhHHHHHHHHHhCCCeEEEEEccch----Hhhhhccccc-CCCcchHHHHH
Q psy3752 591 LAVLKAQQLGEALMKGDAYNINS---SIIKNIISEISEIVSCGIELAIVIGGGN----ICRGISNKIQ-NIDRSTADYMG 662 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~~~~id~---~~i~~ia~~I~~l~~~G~~vvIVhGGG~----~~~~~~~~~~-~~~~~~~~~~~ 662 (1012)
++|+++ +|.++...+...... +.++..|++|+.+.+.|++++|+||+|+ .+++...... +.++.++|.++
T Consensus 4 ~ivval--gGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~ 81 (313)
T PRK12454 4 RIVIAL--GGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAG 81 (313)
T ss_pred eEEEEe--ChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhh
Confidence 567776 888888654332332 4899999999999999999999999974 5555433333 36778899999
Q ss_pred HHHHHHHHHHHHHH----HHhcCCceeEeehhch-----------------h----------------------------
Q psy3752 663 MLATIINSLALFDI----LNKSGIISHVMSAISI-----------------E---------------------------- 693 (1012)
Q Consensus 663 ~~~~~~~~~~l~~~----l~~~gi~a~~l~~~~~-----------------~---------------------------- 693 (1012)
..++|+.++.|+.+ |...|+.....+..+. +
T Consensus 82 a~sqG~igy~l~~al~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~R 161 (313)
T PRK12454 82 AMTQGWIGYMIQQALRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGWR 161 (313)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCceE
Confidence 99999988887776 6777766533332211 0
Q ss_pred ------hhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCc-------------cHHHHHHHHHhcCCceEEeeeccccccc
Q psy3752 694 ------KFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIYN 754 (1012)
Q Consensus 694 ------~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s-------------~D~~Aa~lA~~l~Ad~liilTDVdGVy~ 754 (1012)
...+.++.+.+..+|++|.|||++|+.|+|.++ +|.+|+++|..|+||+|+|+|||||||+
T Consensus 162 rvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~ 241 (313)
T PRK12454 162 RVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYL 241 (313)
T ss_pred EEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeC
Confidence 002234578899999999999999987776543 5999999999999999999999999998
Q ss_pred cCCcCCcCcccccccCHHHHHh--------hhcCcccHHHH-HHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 755 SDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 755 ~dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
+++ .|++++|++++..++.+ .|+|.+|+.|+ +++.+.+.+++|++ ++++.++|.|+ .||+|.+
T Consensus 242 ~~~--~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 242 NYG--KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CCC--CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 743 47899999999887654 58899999988 55555567888874 56799999998 7999963
No 64
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.90 E-value=2.3e-23 Score=230.48 Aligned_cols=226 Identities=22% Similarity=0.216 Sum_probs=160.5
Q ss_pred HHHHHHHHhhhhhhhcC-CCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhccccc---CCCcchHHHH
Q psy3752 590 SLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ---NIDRSTADYM 661 (1012)
Q Consensus 590 ~i~v~K~~~~g~~~~~~-~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~---~~~~~~~~~~ 661 (1012)
+++|+|+ +|+++.++ ++..++.+.+..++++|+.+...|+++||||||| +.+++...... .....+.+..
T Consensus 3 ~~iVIkl--GG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (314)
T PRK12353 3 KKIVVAL--GGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVC 80 (314)
T ss_pred cEEEEEE--CHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHH
Confidence 4567885 56666543 2345899999999999999999999999999995 44443322210 1112223333
Q ss_pred HHHHHHHHHH----HHHHHHHhcCCce--------eEeehhchh--h-------h------------------------h
Q psy3752 662 GMLATIINSL----ALFDILNKSGIIS--------HVMSAISIE--K-------F------------------------L 696 (1012)
Q Consensus 662 ~~~~~~~~~~----~l~~~l~~~gi~a--------~~l~~~~~~--~-------~------------------------~ 696 (1012)
....+++.+. .+...|..+|+.. +.+++.+.. . + .
T Consensus 81 ~a~~qg~l~~~l~~~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (314)
T PRK12353 81 GAMSQGYIGYHLQNALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGY 160 (314)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCcee
Confidence 3444443333 3444477777622 222332210 0 0 0
Q ss_pred ----------hhcchHHHHHHhhCCCEEEEcCcCCCCC-------------CccHHHHHHHHHhcCCceEEeeecccccc
Q psy3752 697 ----------ESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIY 753 (1012)
Q Consensus 697 ----------~~~~~~~l~~~L~~g~VPVi~G~~g~~~-------------~s~D~~Aa~lA~~l~Ad~liilTDVdGVy 753 (1012)
..++.+.+..+|+.|.|||++|+.|.|. .++|++|+++|.+++||+|+++|||||||
T Consensus 161 r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy 240 (314)
T PRK12353 161 RRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVY 240 (314)
T ss_pred EeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 0135688999999999999998765543 33699999999999999999999999999
Q ss_pred ccCCcCCcCcccccccCHHHHHh--------hhcCcccHHHHHHHH--hCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 754 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 754 ~~dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~~a~--~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
++|| +|++++|+++++.++.+ +|+|.+|+.||..+. +.|++++|++ ++++.++++|+ .||+|.+
T Consensus 241 ~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 241 INFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK 314 (314)
T ss_pred CCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence 9766 48899999999876644 588999999886665 7789999997 67899999998 8999964
No 65
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.90 E-value=9.3e-23 Score=224.02 Aligned_cols=208 Identities=18% Similarity=0.162 Sum_probs=167.2
Q ss_pred cchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-------cCC---CcchHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3752 612 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QNI---DRSTADYMGMLATIINSLALFDILNKSG 681 (1012)
Q Consensus 612 d~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~g 681 (1012)
++.....++++|+.|...|.++|||||||.+........ .|+ ++.+++...++.++..+..+++.|..+|
T Consensus 37 ~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~L~~~G 116 (284)
T CHL00202 37 NLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVGSINANG 116 (284)
T ss_pred CcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCC
Confidence 334566899999999999999999999996654333221 122 4556777777777888888999999999
Q ss_pred CceeEeehhchhh---------------hhhhcchHHHHHHhhCCCEEEEcCc----CCC-CCCccHHHHHHHHHhcCCc
Q psy3752 682 IISHVMSAISIEK---------------FLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAE 741 (1012)
Q Consensus 682 i~a~~l~~~~~~~---------------~~~~~~~~~l~~~L~~g~VPVi~G~----~g~-~~~s~D~~Aa~lA~~l~Ad 741 (1012)
++++++++.+.+. .+..++.+.+..+|++|.|||+++. .|. -++++|++|+.+|.+|+||
T Consensus 117 v~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad 196 (284)
T CHL00202 117 GKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAE 196 (284)
T ss_pred CCeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCC
Confidence 9999999987531 1455788999999999999999973 121 2457999999999999999
Q ss_pred eEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCCc-EEEEecCCchh-HHHHh
Q psy3752 742 IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGA-LKRVI 812 (1012)
Q Consensus 742 ~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi~-v~I~~g~~~~~-i~~~l 812 (1012)
+|+|+|||||||+++. +| .++|++++.+++.+ +|+|..|+.+|..|.++|++ ++|++|+.|+. +.+++
T Consensus 197 ~li~lTdv~Gv~~~~~--d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~ 273 (284)
T CHL00202 197 KLILLTDTPGILADIN--DP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEIL 273 (284)
T ss_pred EEEEEeCChhhcCCCC--CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHh
Confidence 9999999999998532 13 37899998877654 58999999999999999986 78999999987 57889
Q ss_pred cCCCcceEEE
Q psy3752 813 EGKNEGTLVY 822 (1012)
Q Consensus 813 ~Ge~~GT~I~ 822 (1012)
.++..||+|.
T Consensus 274 ~~~g~GT~i~ 283 (284)
T CHL00202 274 TEKGIGSMLV 283 (284)
T ss_pred cCCCCceEEe
Confidence 8888999985
No 66
>PLN02512 acetylglutamate kinase
Probab=99.90 E-value=4.6e-23 Score=228.72 Aligned_cols=208 Identities=17% Similarity=0.194 Sum_probs=166.6
Q ss_pred chhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccc---c----cCC---CcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3752 613 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---I----QNI---DRSTADYMGMLATIINSLALFDILNKSGI 682 (1012)
Q Consensus 613 ~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~---~----~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~gi 682 (1012)
++....++++|+.+...|.++|||||||.+....... . .|+ +...++.+.++..+..+..+++.|.++|+
T Consensus 62 ~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv 141 (309)
T PLN02512 62 PELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGG 141 (309)
T ss_pred hhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 3456678899998888999999999999665543322 1 122 44556667777777788889999999999
Q ss_pred ceeEeehhchh----------------hhhhhcchHHHHHHhhCCCEEEEcCcC----CC-CCCccHHHHHHHHHhcCCc
Q psy3752 683 ISHVMSAISIE----------------KFLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTTAALRAAEIKAE 741 (1012)
Q Consensus 683 ~a~~l~~~~~~----------------~~~~~~~~~~l~~~L~~g~VPVi~G~~----g~-~~~s~D~~Aa~lA~~l~Ad 741 (1012)
+++++++.+.+ ..+..++.+.+..+|+.|.|||++|.. |. -++++|++|+.+|..|+||
T Consensus 142 ~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad 221 (309)
T PLN02512 142 TAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAE 221 (309)
T ss_pred CeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCC
Confidence 99999987742 124567889999999999999999831 11 2357999999999999999
Q ss_pred eEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCCc-EEEEecCCchhHH-HHh
Q psy3752 742 IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGALK-RVI 812 (1012)
Q Consensus 742 ~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi~-v~I~~g~~~~~i~-~~l 812 (1012)
+|+++|||||||+++| +++++|++++.+++.+ +|+|..|+.++..+.+.|++ ++|++|..|+.+. .++
T Consensus 222 ~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~ 298 (309)
T PLN02512 222 KLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEIL 298 (309)
T ss_pred EEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHh
Confidence 9999999999999864 3478899999877654 69999999999988898994 8999999998865 678
Q ss_pred cCCCcceEEEE
Q psy3752 813 EGKNEGTLVYE 823 (1012)
Q Consensus 813 ~Ge~~GT~I~~ 823 (1012)
.++..||+|.+
T Consensus 299 ~~~~~GT~I~~ 309 (309)
T PLN02512 299 TDEGAGTMITG 309 (309)
T ss_pred cCCCCeeEEeC
Confidence 88889999964
No 67
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.89 E-value=1e-22 Score=248.85 Aligned_cols=233 Identities=18% Similarity=0.228 Sum_probs=175.0
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc----chHhhhhcccccC----C--CcchH
Q psy3752 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQN----I--DRSTA 658 (1012)
Q Consensus 589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG----G~~~~~~~~~~~~----~--~~~~~ 658 (1012)
.+++|+|+ |++.+++..+.++...+.+++++|+++++.|+++|||+|| |+...+....... + +....
T Consensus 15 ~~~iViK~---G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 91 (718)
T PLN02418 15 VKRVVIKV---GTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMEL 91 (718)
T ss_pred CCEEEEEe---CCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchH
Confidence 45789995 5555556666799999999999999999999999999998 4555544332111 1 12233
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhcCCcee--Eeehhchhhh-hhhcchHHHHHHhhCCCEEEEcCcCCCC---------
Q psy3752 659 DYMGMLATIIN---SLALFDILNKSGIISH--VMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP--------- 723 (1012)
Q Consensus 659 ~~~~~~~~~~~---~~~l~~~l~~~gi~a~--~l~~~~~~~~-~~~~~~~~l~~~L~~g~VPVi~G~~g~~--------- 723 (1012)
+. +.+++.++ ..++..+|..+|+++. .++..++... ........+..+|+.|.|||+++.....
T Consensus 92 ~~-qa~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~ 170 (718)
T PLN02418 92 DG-KACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDS 170 (718)
T ss_pred HH-HHHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccc
Confidence 33 33344333 4455556999999874 3443444322 2233457888899999999998732211
Q ss_pred --CC-ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHH---H--------hhhcCcccHHHHHH
Q psy3752 724 --FF-TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEV---I--------SKKLEIMDSTAFSF 789 (1012)
Q Consensus 724 --~~-s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~---~--------~~G~~v~~~~aa~~ 789 (1012)
.+ .+|++|++||.+++||.|+|+|||||||++||+ +|++++|++++..+. . -+|||.+|+.|+..
T Consensus 171 ~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~ 249 (718)
T PLN02418 171 SGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVN 249 (718)
T ss_pred cCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHH
Confidence 23 399999999999999999999999999999997 589999999865332 1 17899999999999
Q ss_pred HHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEeee
Q psy3752 790 CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI 826 (1012)
Q Consensus 790 a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~ 826 (1012)
+.++|++++|+||..|+++.++|.|+.+||+|.+..+
T Consensus 250 a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 286 (718)
T PLN02418 250 AASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDAH 286 (718)
T ss_pred HHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccccc
Confidence 9999999999999999999999999999999987533
No 68
>PRK08210 aspartate kinase I; Reviewed
Probab=99.89 E-value=7.6e-23 Score=237.24 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=164.0
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chH----h----hhhccc-ccCCCcchHHH
Q psy3752 591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNI----C----RGISNK-IQNIDRSTADY 660 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~----~----~~~~~~-~~~~~~~~~~~ 660 (1012)
++|+|+ +|+++ -+.+.+.+++++|+.+.+.|++++||||| |.. . .+.... ....++...+.
T Consensus 3 ~iViK~--GGs~l-------~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~ 73 (403)
T PRK08210 3 IIVQKF--GGTSV-------STEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDL 73 (403)
T ss_pred eEEEeE--CCccc-------CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHH
Confidence 457785 44433 24466899999999999999999888865 211 1 111111 11123344444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCC---CC---C
Q psy3752 661 MGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F 725 (1012)
Q Consensus 661 ~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~---~~---~ 725 (1012)
+...+....+.+++.+|..+|++++++++.+.... +...+.+.+..+++.|.|||++|+.|. +. +
T Consensus 74 l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l 153 (403)
T PRK08210 74 LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTL 153 (403)
T ss_pred HHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEe
Confidence 43333333566788999999999999998765211 234567889999999999999997542 21 2
Q ss_pred ---ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEE
Q psy3752 726 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV 799 (1012)
Q Consensus 726 ---s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I 799 (1012)
++|++|+.+|.+|+||+++|||||||||++||+.+|++++|++++++|+.+ .|.+++|+.|+++|.++++|++|
T Consensus 154 ~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i 233 (403)
T PRK08210 154 GRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRI 233 (403)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEE
Confidence 489999999999999999999999999999999999999999999998877 79999999999999999999999
Q ss_pred EecCCchhHHHHhcCCCcceEEEEe
Q psy3752 800 FSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 800 ~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
.|++.+ ..||+|.+.
T Consensus 234 ~~~~~~----------~~gT~I~~~ 248 (403)
T PRK08210 234 RSTYSD----------SPGTLITSL 248 (403)
T ss_pred EecCCC----------cCCcEEEec
Confidence 999864 249999764
No 69
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.89 E-value=1.3e-22 Score=223.59 Aligned_cols=149 Identities=19% Similarity=0.292 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHhcCCceeEeehhchhhhh-------------hhcchHHHHHHhhCCCEEEEcCcCCCC--C----C
Q psy3752 665 ATIINSLALFDILNKSGIISHVMSAISIEKFL-------------ESYIPLNAIKYLEEGKVVIFAGGIGNP--F----F 725 (1012)
Q Consensus 665 ~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~~-------------~~~~~~~l~~~L~~g~VPVi~G~~g~~--~----~ 725 (1012)
+..+++.+++.+|++.|++++++++.++..+. .......+..+++.|.|||++||.|.. + .
T Consensus 125 GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~g~~ttl 204 (298)
T cd04244 125 GERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTL 204 (298)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCCCCEEEe
Confidence 33347888999999999999999998763110 001112345667889999999986632 1 1
Q ss_pred ---ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEE
Q psy3752 726 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV 799 (1012)
Q Consensus 726 ---s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I 799 (1012)
.+|++|+.+|.+|+|+.++|||||||||++||+.+|+++++++++++|+.+ .|++++|+.|+.+|.++|||++|
T Consensus 205 gRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i 284 (298)
T cd04244 205 GRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRV 284 (298)
T ss_pred cCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEE
Confidence 389999999999999999999999999999999999999999999999987 69999999999999999999999
Q ss_pred EecCCchhHHHHhcCCCcceEEE
Q psy3752 800 FSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 800 ~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
.|+++|+ ..||+|+
T Consensus 285 ~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 285 KNTFNPE---------APGTLIT 298 (298)
T ss_pred eeCCCCC---------CCCCEeC
Confidence 9999883 4699984
No 70
>PRK12686 carbamate kinase; Reviewed
Probab=99.88 E-value=1.2e-22 Score=221.06 Aligned_cols=224 Identities=17% Similarity=0.199 Sum_probs=167.8
Q ss_pred HHHHHHHhhhhhhhcCC-CCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhccccc-CCCcchHHHHHHH
Q psy3752 591 LAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDRSTADYMGML 664 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~-~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~-~~~~~~~~~~~~~ 664 (1012)
++|+++ +|.++...+ ........++..|++|+.|...|+++||+||+| +.++....... ..++.++|.++..
T Consensus 4 ~iVial--GGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~ 81 (312)
T PRK12686 4 KIVIAL--GGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAM 81 (312)
T ss_pred EEEEEc--ChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhh
Confidence 456776 777776533 223445678999999999999999999999997 34443323322 3578899999999
Q ss_pred HHHHHHHHHHHH----HHhcCCceeE--------eehhch-------------------------h------------hh
Q psy3752 665 ATIINSLALFDI----LNKSGIISHV--------MSAISI-------------------------E------------KF 695 (1012)
Q Consensus 665 ~~~~~~~~l~~~----l~~~gi~a~~--------l~~~~~-------------------------~------------~~ 695 (1012)
++|..+++|+.. |...++..-. ++..+- + .+
T Consensus 82 sqg~iGy~~~q~l~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rrv 161 (312)
T PRK12686 82 SQGMIGYWLQNALNNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRRV 161 (312)
T ss_pred ccchhhHHHHHHHHHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEEe
Confidence 999999988877 4444533211 111110 0 00
Q ss_pred ------hhhcchHHHHHHhhCCCEEEEcCcCCCCC-------------CccHHHHHHHHHhcCCceEEeeeccccccccC
Q psy3752 696 ------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYNSD 756 (1012)
Q Consensus 696 ------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~-------------~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~d 756 (1012)
.+-++.+.+..++++|+|||.+|+.|.|. +++|++|++||.+|+||+|+|+|||||||++
T Consensus 162 V~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~- 240 (312)
T PRK12686 162 VPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN- 240 (312)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-
Confidence 12267889999999999999988755332 3479999999999999999999999999995
Q ss_pred CcCCcCcccccccCHHHHHh--------hhcCcccHHHHHHHHhC--CCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 757 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQ--KLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 757 P~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~~a~~~--gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
|. .|++++|++++.+++.. +|+|.+|+.|+..+.+. |.+++|++ ++++.++|.|+ .||+|.
T Consensus 241 ~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 241 FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 43 48899999999877654 59999999998887754 56888886 67788999998 799985
No 71
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.88 E-value=7.4e-23 Score=225.20 Aligned_cols=218 Identities=20% Similarity=0.241 Sum_probs=167.8
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-------cCC---CcchHHH
Q psy3752 591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QNI---DRSTADY 660 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~ 660 (1012)
.+|+|+ +|+++ + ++.....++++++.+...|.++|||||||.......... .++ ++..++.
T Consensus 16 ~~ViKl--GGs~i-~------~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~ 86 (279)
T cd04250 16 TVVIKY--GGNAM-K------DEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEI 86 (279)
T ss_pred EEEEEE--ChHHh-c------CccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHH
Confidence 567885 44432 2 233567788989888888999999999986554333221 111 3333445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeEeehhchhh---------------------hhhhcchHHHHHHhhCCCEEEEcCc
Q psy3752 661 MGMLATIINSLALFDILNKSGIISHVMSAISIEK---------------------FLESYIPLNAIKYLEEGKVVIFAGG 719 (1012)
Q Consensus 661 ~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~---------------------~~~~~~~~~l~~~L~~g~VPVi~G~ 719 (1012)
..++.++..+..+++.|.++|++++++++.+.+. .+..++.+.+..+|+.|.|||++|
T Consensus 87 ~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~- 165 (279)
T cd04250 87 VEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAP- 165 (279)
T ss_pred HHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcC-
Confidence 5555445566778889999999999999986421 134567899999999999999998
Q ss_pred CCC--C----CCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHH
Q psy3752 720 IGN--P----FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTA 786 (1012)
Q Consensus 720 ~g~--~----~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~a 786 (1012)
.|. . ++++|++|+.+|..|+||.|+++|||||||++||+ .+++|++++++|+.+ +|+|..|+.+
T Consensus 166 ~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~ 242 (279)
T cd04250 166 VGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEA 242 (279)
T ss_pred CccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHH
Confidence 232 1 24599999999999999999999999999999984 378999999877654 6999999999
Q ss_pred HHHHHhCCCc-EEEEecCCchh-HHHHhcCCCcceEE
Q psy3752 787 FSFCRDQKLP-IRVFSIIKSGA-LKRVIEGKNEGTLV 821 (1012)
Q Consensus 787 a~~a~~~gi~-v~I~~g~~~~~-i~~~l~Ge~~GT~I 821 (1012)
|..+.++|++ ++|+||..|++ +.+++.++..||+|
T Consensus 243 a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 243 CIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 9998888885 99999999986 56788888899975
No 72
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.88 E-value=1.8e-22 Score=212.12 Aligned_cols=168 Identities=22% Similarity=0.362 Sum_probs=135.3
Q ss_pred CceEEEEecCCC----CCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCC-CCCHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLM-SSDPLMRARARLMLLNFE 74 (1012)
Q Consensus 1 I~ye~~~Vd~~~----~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~-p~~~~era~v~~~~~~~~ 74 (1012)
|||+.+.|++.. .+++|+++||.|+||+|+ +||.+|+||.+|++||+++||+..++ |.++.+|+++++|+.+..
T Consensus 23 i~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~~~l~~p~~~~~ra~~~~~~~~~~ 102 (201)
T PRK10542 23 LDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVGSLSRYHTIEWLNYIA 102 (201)
T ss_pred CCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcccccCCCCCcHHHHHHHHHHHHHH
Confidence 689999999864 347899999999999998 58899999999999999999987766 567889999999877665
Q ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhH
Q psy3752 75 KEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLI 154 (1012)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~ 154 (1012)
..+...+...... .............+.+.|..+|++|++++||+|+++|+||+++++.+.++...+.++ +.||+|.
T Consensus 103 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~-~~~p~l~ 179 (201)
T PRK10542 103 TELHKGFTPLFRP--DTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYLFTVLRWAYAVKLNL-EGLEHIA 179 (201)
T ss_pred hhhhhhhhhccCC--CChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHHHHHHHHhhccCCCc-ccchHHH
Confidence 5554432222111 111222244567788999999999998999999999999999999998887666654 4699999
Q ss_pred HHHHHHhcCCccccccc
Q psy3752 155 KYAERIFSRPSYMESLT 171 (1012)
Q Consensus 155 aw~~ri~~rp~~~~~lt 171 (1012)
+|++++.+||+|++++.
T Consensus 180 ~w~~~~~~~p~~k~~~~ 196 (201)
T PRK10542 180 AYMQRVAERPAVAAALK 196 (201)
T ss_pred HHHHHHHcCHHHHHHHH
Confidence 99999999999998764
No 73
>PRK07431 aspartate kinase; Provisional
Probab=99.88 E-value=2.5e-22 Score=243.53 Aligned_cols=214 Identities=22% Similarity=0.267 Sum_probs=165.9
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccccCC-CcchHHHHHHHHH-HH
Q psy3752 592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNI-DRSTADYMGMLAT-II 668 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~ 668 (1012)
+|+|+ +|+++ .+.+.+++++++|+.+.+.|+++|||||| |.....+......+ ++...+...++.+ |+
T Consensus 4 iViKf--GGss~-------~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~t~~~~~~~~~~~ls~Ge 74 (587)
T PRK07431 4 IVQKF--GGTSV-------GSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSNPPRREMDMLLSTGE 74 (587)
T ss_pred EEEEE--Cchhc-------CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHhH
Confidence 46675 44443 57889999999999999999999999996 64443332221111 2223333344433 43
Q ss_pred --HHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCCC-----Cc------
Q psy3752 669 --NSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-----FT------ 726 (1012)
Q Consensus 669 --~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~-----~s------ 726 (1012)
+..+++.+|.++|++++++++.++... +..++.+.+..+++.|.|||++|+.|... .+
T Consensus 75 ~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrgg 154 (587)
T PRK07431 75 QVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGG 154 (587)
T ss_pred HHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCc
Confidence 455666789999999999998876322 22345678999999999999999766421 22
Q ss_pred cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecC
Q psy3752 727 TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSII 803 (1012)
Q Consensus 727 ~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~ 803 (1012)
+|++|+++|..|+||+|++||||||||++||+.+|++++|++++++|+.+ .|.+++++.|+.+|.++|+|++|.|++
T Consensus 155 sD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~ 234 (587)
T PRK07431 155 SDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSW 234 (587)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCC
Confidence 79999999999999999999999999999999999999999999998877 689999999999999999999999987
Q ss_pred CchhHHHHhcCCCcceEEEEe
Q psy3752 804 KSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 804 ~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
. +..||+|.+.
T Consensus 235 ~----------~~~GT~i~~~ 245 (587)
T PRK07431 235 S----------DAPGTLVTSP 245 (587)
T ss_pred C----------CCCCeEEEeC
Confidence 3 2359999754
No 74
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.88 E-value=1.5e-22 Score=223.48 Aligned_cols=217 Identities=20% Similarity=0.215 Sum_probs=168.3
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-------cCC---CcchHHH
Q psy3752 591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QNI---DRSTADY 660 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~ 660 (1012)
++|+|+ +|+++ +. .+.+..++++|+.+.+.|.++|||||||.......... .++ +...++.
T Consensus 25 ~iViK~--GGs~l-~~------~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~~ 95 (283)
T PRK00942 25 TIVIKY--GGNAM-TD------EELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETMEV 95 (283)
T ss_pred eEEEEE--ChHHh-cC------cchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHHH
Confidence 468885 44443 22 24577899999999999999999999985554433211 111 2334454
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeEeehhchh----------------hhhhhcchHHHHHHhhCCCEEEEcCcCCC--
Q psy3752 661 MGMLATIINSLALFDILNKSGIISHVMSAISIE----------------KFLESYIPLNAIKYLEEGKVVIFAGGIGN-- 722 (1012)
Q Consensus 661 ~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~----------------~~~~~~~~~~l~~~L~~g~VPVi~G~~g~-- 722 (1012)
..++.++..+..+.+.|..+|++++++++.+.+ ..+..++.+.+..+|++|.|||+++ .|.
T Consensus 96 ~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~-~~~~~ 174 (283)
T PRK00942 96 VEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISP-IGVGE 174 (283)
T ss_pred HHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcC-cEECC
Confidence 445444555677778899999999999987642 1235578899999999999999997 221
Q ss_pred ----CCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHH
Q psy3752 723 ----PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCR 791 (1012)
Q Consensus 723 ----~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~ 791 (1012)
-++++|++|+.||..|+||+|+++|||||||++ ++++|++++++|+.+ +|+|..++.+|..+.
T Consensus 175 ~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~ 248 (283)
T PRK00942 175 DGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAA 248 (283)
T ss_pred CCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence 135599999999999999999999999999986 378899999887654 589999999998888
Q ss_pred hCCC-cEEEEecCCchh-HHHHhcCCCcceEEEE
Q psy3752 792 DQKL-PIRVFSIIKSGA-LKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 792 ~~gi-~v~I~~g~~~~~-i~~~l~Ge~~GT~I~~ 823 (1012)
+.|+ +++|++|..|++ +.+++.|+.+||+|.+
T Consensus 249 ~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 282 (283)
T PRK00942 249 RGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282 (283)
T ss_pred HhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence 8887 699999999999 8889999999999986
No 75
>KOG0868|consensus
Probab=99.88 E-value=2.5e-22 Score=192.28 Aligned_cols=170 Identities=26% Similarity=0.450 Sum_probs=140.7
Q ss_pred CceEEEEecCCC----CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKE 76 (1012)
Q Consensus 1 I~ye~~~Vd~~~----~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~ 76 (1012)
|+||+++|++.. ...+|+++||+++||+|++||.+|+||.||++||+++||+++|+|.|+..|+.+++....+.+.
T Consensus 29 iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ppLLP~d~~KRA~~r~i~~~i~sg 108 (217)
T KOG0868|consen 29 IDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDPPLLPKDPHKRAKARAISLLIASG 108 (217)
T ss_pred CCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 689999999976 3468999999999999999999999999999999999999999999999999999997777766
Q ss_pred HHHHH--HHhhhccccccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCch
Q psy3752 77 IFIHL--YMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP 152 (1012)
Q Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~ 152 (1012)
+.+.. ........+........+...+.+.|.+||+.|. .++|.+||++|+||+++.|.++....+..++.. ||-
T Consensus 109 IQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiADl~L~pqv~nA~rf~vdl~P-YPt 187 (217)
T KOG0868|consen 109 IQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIADLCLPPQVYNANRFHVDLTP-YPT 187 (217)
T ss_pred CCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehhhhccchhhhhhhhccccCCc-Cch
Confidence 54321 1111111122212234455778899999999986 578999999999999999999999888888765 999
Q ss_pred hHHHHHHHhcCCccccccc
Q psy3752 153 LIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 153 L~aw~~ri~~rp~~~~~lt 171 (1012)
+.+..+.+.+.|+|+.+.+
T Consensus 188 i~ri~e~l~elpaFq~ahP 206 (217)
T KOG0868|consen 188 ITRINEELAELPAFQAAHP 206 (217)
T ss_pred HHHHHHHHHhCHHHHhcCC
Confidence 9999999999999998765
No 76
>KOG0406|consensus
Probab=99.88 E-value=9.8e-22 Score=202.42 Aligned_cols=175 Identities=27% Similarity=0.422 Sum_probs=143.6
Q ss_pred CceEEEEecCCCCCchhhhcC-CCCCccEEEeCCEeeccHHHHHHHHhhhCC-CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMN-PYGQVPILVERDLILYESNIINEYIDERFP-YPQLMSSDPLMRARARLMLLNFEKEIF 78 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~in-P~gkVPvL~ddg~~I~ES~aIl~YL~~~~p-~~~L~p~~~~era~v~~~~~~~~~~~~ 78 (1012)
|+||++++|+.++++||++.| |.++||||+++|..|+||..|++||++.+| +++++|.||.+|++++.|..+++..++
T Consensus 33 I~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~iLP~DPy~Ra~arfwa~~id~~~~ 112 (231)
T KOG0406|consen 33 IPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPILPSDPYERAQARFWAEYIDKKVF 112 (231)
T ss_pred CceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHhHHH
Confidence 689999999999999999999 699999999999999999999999999999 699999999999999999998887654
Q ss_pred HHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc-CCCcccCCCcCHHHHHHHHHhhhhhhc----c---ccccCCC
Q psy3752 79 IHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAPLLWRLDYY----G---INLSKSA 150 (1012)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~-~~~fL~Gd~~TlADi~l~~~L~~l~~~----~---~~l~~~~ 150 (1012)
........... .+..+....++...|..||+.|. +++|+.|+++++.|++++|++.+.... + +.....+
T Consensus 113 ~~~~~~~~~~~---~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~ 189 (231)
T KOG0406|consen 113 FVGRFVVAAKG---GEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEET 189 (231)
T ss_pred HHHHHHHhhcC---chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCC
Confidence 43322222111 12224566778899999999998 889999999999999999777544321 1 2334679
Q ss_pred chhHHHHHHHhcCCccccccchhhhhhh
Q psy3752 151 SPLIKYAERIFSRPSYMESLTPAEKIMQ 178 (1012)
Q Consensus 151 P~L~aw~~ri~~rp~~~~~lt~~~~l~~ 178 (1012)
|.|.+|++||.++|++++++++.+.+.+
T Consensus 190 P~L~~W~~~~~~~~~V~~~~p~~e~~~e 217 (231)
T KOG0406|consen 190 PKLIKWIKRMKEDEAVKAVLPDSEKVVE 217 (231)
T ss_pred ccHHHHHHHHhcChhHHhhcCCHHHHHH
Confidence 9999999999999999999886555543
No 77
>PLN02395 glutathione S-transferase
Probab=99.88 E-value=4.7e-22 Score=211.34 Aligned_cols=171 Identities=25% Similarity=0.337 Sum_probs=134.0
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC--CCCCCCCHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY--PQLMSSDPLMRARARLMLLNFEK 75 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~--~~L~p~~~~era~v~~~~~~~~~ 75 (1012)
++|+.+.+++.. .+++|+++||.|+||+|+++|.+|+||.+|++||+++|+. ++|+|.++.+++++++|+.+...
T Consensus 25 l~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~ 104 (215)
T PLN02395 25 VEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQGPDLLGKTIEERGQVEQWLDVEAT 104 (215)
T ss_pred CCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCCcCcCCCChhHHHHHHHHHHHHHH
Confidence 689999999863 5789999999999999999999999999999999999975 36999999999999999776554
Q ss_pred HHHHH----HHHhh---hccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-c-ccc
Q psy3752 76 EIFIH----LYMLE---NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-G-INL 146 (1012)
Q Consensus 76 ~~~~~----~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~-~~l 146 (1012)
.+.+. ..... ...............+.+.+.++.||++|++++|++|+++|+||+++++++.++... + ...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~~~ 184 (215)
T PLN02395 105 SYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGDFVSLADLAHLPFTEYLVGPIGKAYL 184 (215)
T ss_pred hcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcCHHHHHHHHHHHHHhcccchhhh
Confidence 33211 11110 011122233445567788999999999999889999999999999999988776321 2 123
Q ss_pred cCCCchhHHHHHHHhcCCccccccc
Q psy3752 147 SKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 147 ~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
.+.||+|.+|++++.+||+|++++.
T Consensus 185 ~~~~p~L~~w~~~~~~rp~~k~~~~ 209 (215)
T PLN02395 185 IKDRKHVSAWWDDISSRPAWKEVLA 209 (215)
T ss_pred hccCchHHHHHHHHHcChHHHHHHH
Confidence 4568999999999999999998765
No 78
>PRK06291 aspartate kinase; Provisional
Probab=99.88 E-value=2.4e-20 Score=219.15 Aligned_cols=206 Identities=20% Similarity=0.281 Sum_probs=156.3
Q ss_pred cccchhhHhHHHHHHHHHhCCCeEEEEEcc--c--hHhhhhcccc-----------------------------------
Q psy3752 610 NINSSIIKNIISEISEIVSCGIELAIVIGG--G--NICRGISNKI----------------------------------- 650 (1012)
Q Consensus 610 ~id~~~i~~ia~~I~~l~~~G~~vvIVhGG--G--~~~~~~~~~~----------------------------------- 650 (1012)
.-+.+.++++++.|.+....|.++|+|+|+ | +.+.......
T Consensus 12 v~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 91 (465)
T PRK06291 12 VGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRERHYKAIEEAIKDPDIRE 91 (465)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHhhcChhhHH
Confidence 346778999999998766678899999997 4 2221111000
Q ss_pred -----------------------cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhh---------hh-
Q psy3752 651 -----------------------QNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LE- 697 (1012)
Q Consensus 651 -----------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~- 697 (1012)
..+++...|.....+..+++.+++.+|++.|+++.++++.+.+.+ +.
T Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~ 171 (465)
T PRK06291 92 EVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLP 171 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeech
Confidence 001122233333333334788899999999999999999875211 00
Q ss_pred ---hcchHHHHHHhhCCCEEEEcCcCCCC---C---C---ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCccc
Q psy3752 698 ---SYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAII 765 (1012)
Q Consensus 698 ---~~~~~~l~~~L~~g~VPVi~G~~g~~---~---~---s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~ 765 (1012)
......+..+++.|.|||++||.|.. . . ++|++|+.+|..|+||.+++||||||||++||+.+|++++
T Consensus 172 ~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~ 251 (465)
T PRK06291 172 KTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARV 251 (465)
T ss_pred hhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeE
Confidence 11123566678899999999976521 1 1 3899999999999999999999999999999999999999
Q ss_pred ccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 766 YKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 766 i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
+++++++|+.+ .|++++|+.|+.+|.++|+|++|.|+++|+ ..||+|...
T Consensus 252 i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 252 IPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred ccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCC---------CCceEEEec
Confidence 99999999877 699999999999999999999999999873 468999753
No 79
>PLN02473 glutathione S-transferase
Probab=99.88 E-value=6e-22 Score=210.37 Aligned_cols=171 Identities=20% Similarity=0.301 Sum_probs=134.2
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC--CCCCCCHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP--QLMSSDPLMRARARLMLLNFEK 75 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~--~L~p~~~~era~v~~~~~~~~~ 75 (1012)
|||+.+.+++.+ .+++|+++||+|+||+|++||.+|+||.||++||+++||+. +|+|.++.+|+++++|+.+...
T Consensus 26 i~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~ 105 (214)
T PLN02473 26 IEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQGTDLLGKTLEHRAIVDQWVEVENN 105 (214)
T ss_pred CCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 689999999864 67889999999999999999999999999999999999753 6999999999999999765544
Q ss_pred HHHHH----HHH-hh--hccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-c-ccc
Q psy3752 76 EIFIH----LYM-LE--NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-G-INL 146 (1012)
Q Consensus 76 ~~~~~----~~~-~~--~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~-~~l 146 (1012)
.+... ... .. ....+......+.....+.+.|+.||++|++++|++|+++|+||+++++.+.++... . ..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~~~~~~~~~~~~~~~~~~ 185 (214)
T PLN02473 106 YFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDEFTLADLTHMPGMRYIMNETSLSGL 185 (214)
T ss_pred cccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHHHhccccHHH
Confidence 33211 111 11 111222333445566788899999999999889999999999999999998776432 1 123
Q ss_pred cCCCchhHHHHHHHhcCCccccccc
Q psy3752 147 SKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 147 ~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
.+.||+|.+|++++.+||+|++++.
T Consensus 186 ~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 186 VTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred HhcCHHHHHHHHHHhcChhhHHHHH
Confidence 4679999999999999999997654
No 80
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.88 E-value=2.1e-21 Score=212.82 Aligned_cols=202 Identities=19% Similarity=0.219 Sum_probs=153.7
Q ss_pred cccchhhHhHHHHHHHHHhCCCeEEEEEcc--c--hHhhhhcccc-----------------------------------
Q psy3752 610 NINSSIIKNIISEISEIVSCGIELAIVIGG--G--NICRGISNKI----------------------------------- 650 (1012)
Q Consensus 610 ~id~~~i~~ia~~I~~l~~~G~~vvIVhGG--G--~~~~~~~~~~----------------------------------- 650 (1012)
.-+.+.++++++.|....+.|.++++|+|+ | +.+.......
T Consensus 11 v~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L~~~~~~~i~~~~ 90 (295)
T cd04259 11 VSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEVDADALLANDL 90 (295)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 356778999999887655677889999997 4 2211110000
Q ss_pred -------------cCCCcchHHHHHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhhh----------------hhc
Q psy3752 651 -------------QNIDRSTADYMGMLATI--INSLALFDILNKSGIISHVMSAISIEKFL----------------ESY 699 (1012)
Q Consensus 651 -------------~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~~----------------~~~ 699 (1012)
...++. ....+++.| +++.+++.+|++.|+++..+++.++.... ...
T Consensus 91 ~~l~~~l~~~~~~~~~~~~--~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~ 168 (295)
T cd04259 91 AQLQRWLTGISLLKQASPR--TRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEY 168 (295)
T ss_pred HHHHHHHHHhhhhccCCHH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhh
Confidence 001222 234444455 47888999999999999999987651110 112
Q ss_pred chHHHHHHhhC-CCEEEEcCcCCCC--C-Cc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCccccccc
Q psy3752 700 IPLNAIKYLEE-GKVVIFAGGIGNP--F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKI 769 (1012)
Q Consensus 700 ~~~~l~~~L~~-g~VPVi~G~~g~~--~-~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i 769 (1012)
....+...+.. +.|||++||+|.. + .+ +|++|+.+|.+++||.+++||||||||++||+.+|++++|+++
T Consensus 169 ~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~l 248 (295)
T cd04259 169 ADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRL 248 (295)
T ss_pred hHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEecee
Confidence 33556666665 6799999998732 1 22 9999999999999999999999999999999999999999999
Q ss_pred CHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 770 TFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 770 ~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
+++|+.+ .|++++|+.|+.+|.++|+|++|.|+++| +..||+|+
T Consensus 249 s~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p---------~~~GT~I~ 295 (295)
T cd04259 249 DYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERP---------ELSGTLIT 295 (295)
T ss_pred CHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCC---------CCCCcEeC
Confidence 9999876 69999999999999999999999999988 45799984
No 81
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.87 E-value=2.9e-22 Score=218.15 Aligned_cols=201 Identities=19% Similarity=0.177 Sum_probs=158.7
Q ss_pred hhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccccc-------C---CCcchHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy3752 614 SIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ-------N---IDRSTADYMGMLATIINSLALFDILNKSGII 683 (1012)
Q Consensus 614 ~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~ 683 (1012)
..+.+++++|+.+...|.++|||||||........... + .++..++...++.++..+..++++|.++|++
T Consensus 14 ~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i~~~L~~~Gv~ 93 (256)
T cd04238 14 ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKELVSLLNRAGGK 93 (256)
T ss_pred cHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHHHHHhCCCC
Confidence 46788999999888889999999999865543332211 1 1334445555444355667788899999999
Q ss_pred eeEeehhchh-----------------hhhhhcchHHHHHHhhCCCEEEEcCcCCC------CCCccHHHHHHHHHhcCC
Q psy3752 684 SHVMSAISIE-----------------KFLESYIPLNAIKYLEEGKVVIFAGGIGN------PFFTTDTTAALRAAEIKA 740 (1012)
Q Consensus 684 a~~l~~~~~~-----------------~~~~~~~~~~l~~~L~~g~VPVi~G~~g~------~~~s~D~~Aa~lA~~l~A 740 (1012)
++++++.+.+ ..+..++.+.+..+|++|.|||++|. |. .+.++|++|+++|..|+|
T Consensus 94 a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~-~~~~~g~~~~~~~D~~A~~lA~~l~a 172 (256)
T cd04238 94 AVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI-AVDEDGETYNVNADTAAGAIAAALKA 172 (256)
T ss_pred CCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCc-EECCCCcEEEECHHHHHHHHHHHcCC
Confidence 9999998752 22445788999999999999999972 21 134599999999999999
Q ss_pred ceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCC-cEEEEecCCchhHHHHh
Q psy3752 741 EIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVI 812 (1012)
Q Consensus 741 d~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l 812 (1012)
|.|+++|||||||++ ++++|++++++++.+ +|+|..++.+|..+.+.|+ +++|++|..|++|.++|
T Consensus 173 ~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l 246 (256)
T cd04238 173 EKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLEL 246 (256)
T ss_pred CEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHH
Confidence 999999999999987 268899998877644 5899999999988888776 69999999999999999
Q ss_pred cC-CCcceEE
Q psy3752 813 EG-KNEGTLV 821 (1012)
Q Consensus 813 ~G-e~~GT~I 821 (1012)
.| +..||+|
T Consensus 247 ~~~~~~GT~i 256 (256)
T cd04238 247 FTDEGIGTMI 256 (256)
T ss_pred hcCCCCCCCC
Confidence 98 5689976
No 82
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.87 E-value=5.3e-22 Score=210.94 Aligned_cols=168 Identities=21% Similarity=0.280 Sum_probs=129.0
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEe-----CC--EeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVE-----RD--LILYESNIINEYIDERFPYPQLMSSDPLMRARARLML 70 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~d-----dg--~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~ 70 (1012)
||||.+.|++.. ++++|+++||.|+||+|++ || .+|+||.||++||+++|| .++|.++.+|+++++|+
T Consensus 24 l~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~~~~~--~l~p~~~~~ra~~~~~~ 101 (215)
T PRK13972 24 LDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTG--LFLSHETRERAATLQWL 101 (215)
T ss_pred CCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHH
Confidence 689999999865 3689999999999999997 45 589999999999999986 47788999999999997
Q ss_pred HHHHHHHHHHHHH---hhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccccc
Q psy3752 71 LNFEKEIFIHLYM---LENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLS 147 (1012)
Q Consensus 71 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~ 147 (1012)
.+....+.+.+.. .............+.....+.+.|..||.+|.+++||+|+++|+|||++++++.+....+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~- 180 (215)
T PRK13972 102 FWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWTRQRIDL- 180 (215)
T ss_pred HHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCCCCCHHHHHHHHHHHHHhhcCCcc-
Confidence 6665443322110 000011112233445567788899999999998999999999999999988774433334443
Q ss_pred CCCchhHHHHHHHhcCCccccccc
Q psy3752 148 KSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 148 ~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
+.||+|.+|+++|.+||+|++.+.
T Consensus 181 ~~~P~l~~w~~r~~~rp~~~~~~~ 204 (215)
T PRK13972 181 AMYPAVKNWHERIRSRPATGQALL 204 (215)
T ss_pred hhCHHHHHHHHHHHhCHHHHHHHH
Confidence 569999999999999999987765
No 83
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-21 Score=206.17 Aligned_cols=166 Identities=35% Similarity=0.587 Sum_probs=135.4
Q ss_pred CceEEEEecCCC--CCchhhhcCCCCCccEEEeCCE-eeccHHHHHHHHhhhCCCCCCCCCCHH---HHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN--KPDNIFRMNPYGQVPILVERDL-ILYESNIINEYIDERFPYPQLMSSDPL---MRARARLMLLNFE 74 (1012)
Q Consensus 1 I~ye~~~Vd~~~--~~~~~~~inP~gkVPvL~ddg~-~I~ES~aIl~YL~~~~p~~~L~p~~~~---era~v~~~~~~~~ 74 (1012)
+||+.+.|++.. .+++|+++||.|+||+|++||. +|+||.||++||+++||++.|+|.++. +|+++.+|..++.
T Consensus 24 ~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~l~p~~~~~r~~r~~~~~~~~~~~ 103 (211)
T COG0625 24 LPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPADPLARRARALLLWWLFFAA 103 (211)
T ss_pred CCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCCcCCCCchhHHHHHHHHHHHHHHH
Confidence 589999999984 7899999999999999998765 999999999999999997779998885 7777778866665
Q ss_pred HHHHHHHHHhhh---ccccc-cHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCC
Q psy3752 75 KEIFIHLYMLEN---ERNKT-SIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSA 150 (1012)
Q Consensus 75 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~ 150 (1012)
..+.+.+..... ..... .....+.....+...+..+|..|++++|++|++||+||+++++.+.++...+.++ +.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~tiAD~~~~~~~~~~~~~~~~~-~~~ 182 (211)
T COG0625 104 SDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFTIADIALAPLLWRLALLGEEL-ADY 182 (211)
T ss_pred hcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHhhhcCccc-ccC
Confidence 444333222111 11111 3455567778899999999999999999999999999999999999987776665 669
Q ss_pred chhHHHHHHHhcCCccc
Q psy3752 151 SPLIKYAERIFSRPSYM 167 (1012)
Q Consensus 151 P~L~aw~~ri~~rp~~~ 167 (1012)
|++.+|++|+.+||+++
T Consensus 183 p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 183 PALKAWYERVLARPAFR 199 (211)
T ss_pred hHHHHHHHHHHcCCchh
Confidence 99999999999999965
No 84
>PRK15113 glutathione S-transferase; Provisional
Probab=99.87 E-value=1e-21 Score=208.45 Aligned_cols=167 Identities=23% Similarity=0.278 Sum_probs=132.2
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCC---CCCCCHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQ---LMSSDPLMRARARLMLLNFE 74 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~---L~p~~~~era~v~~~~~~~~ 74 (1012)
|+||.+.+++.+ ..++|+++||+|+||+|++||.+|+||.||++||+++||++. |+|.++.+|+++++|+.++.
T Consensus 31 i~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~ 110 (214)
T PRK15113 31 LPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPADLQARARARQIQAWLR 110 (214)
T ss_pred CCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCccccCCCCHHHHHHHHHHHHHHH
Confidence 689999999875 458999999999999999999999999999999999998765 99999999999999987776
Q ss_pred HHHHHHHHHhh---hccccccHHHHHHHHHHHHHHHHHHHhcccC-CCcccCCCcCHHHHHHHHHhhhhhhccccccCCC
Q psy3752 75 KEIFIHLYMLE---NERNKTSIKGYKRAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSA 150 (1012)
Q Consensus 75 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~-~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~ 150 (1012)
..+........ ...........+.....+.+.|..+|++|++ ++|++|+ +|+||+++++.+.++...+.++ .
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~-~TlADi~l~~~l~~~~~~~~~~---~ 186 (214)
T PRK15113 111 SDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFGE-WCIADTDLALMLNRLVLHGDEV---P 186 (214)
T ss_pred hhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeCC-ccHHHHHHHHHHHHHHHcCCCC---C
Confidence 55543211000 0001111112244556788999999999974 5799996 9999999999998877665543 2
Q ss_pred chhHHHHHHHhcCCccccccc
Q psy3752 151 SPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 151 P~L~aw~~ri~~rp~~~~~lt 171 (1012)
|+|.+|++||.+||+|++.+.
T Consensus 187 p~l~~~~~r~~~rp~~~~~~~ 207 (214)
T PRK15113 187 ERLADYATFQWQRASVQRWLA 207 (214)
T ss_pred HHHHHHHHHHhcCHHHHHHHH
Confidence 899999999999999998765
No 85
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.87 E-value=8e-22 Score=213.85 Aligned_cols=193 Identities=19% Similarity=0.241 Sum_probs=153.7
Q ss_pred hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc---c-------C-----CCcchHHHHHHHHHHHHHHHHHHHHHhc
Q psy3752 616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q-------N-----IDRSTADYMGMLATIINSLALFDILNKS 680 (1012)
Q Consensus 616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~---~-------~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 680 (1012)
..+++++|+.+ |.++|||||||.+........ . + .++.+++.+.++. +..+..+++.|.++
T Consensus 13 ~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~-~~ln~~iv~~L~~~ 88 (257)
T cd04251 13 LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVM-GLINKKIVARLHSL 88 (257)
T ss_pred hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 35789999887 889999999996554333221 1 2 1445556666655 55667788899999
Q ss_pred CCceeEeehhchhh--------------------------hhhhcchHHHHHHhhCCCEEEEcCcC----C-CCCCccHH
Q psy3752 681 GIISHVMSAISIEK--------------------------FLESYIPLNAIKYLEEGKVVIFAGGI----G-NPFFTTDT 729 (1012)
Q Consensus 681 gi~a~~l~~~~~~~--------------------------~~~~~~~~~l~~~L~~g~VPVi~G~~----g-~~~~s~D~ 729 (1012)
|++++++++.+.+. .+..++.+.+..+|++|.|||++++. | .-++++|+
T Consensus 89 Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~ 168 (257)
T cd04251 89 GVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDR 168 (257)
T ss_pred CCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHH
Confidence 99999999977521 13456889999999999999998742 1 12466999
Q ss_pred HHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-----hhcCcccHHHHHHHHhCCC-cEEEEecC
Q psy3752 730 TAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSII 803 (1012)
Q Consensus 730 ~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-----~G~~v~~~~aa~~a~~~gi-~v~I~~g~ 803 (1012)
+|+.+|..|+||+|+|+|||||||++ +++|++++.+++.+ +|+|..|+.++..+.++|+ +++|++|+
T Consensus 169 ~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~ 241 (257)
T cd04251 169 AAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDAR 241 (257)
T ss_pred HHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCC
Confidence 99999999999999999999999963 67889998877655 6999999999999999888 68899999
Q ss_pred CchhHHHHhcCCCcceEE
Q psy3752 804 KSGALKRVIEGKNEGTLV 821 (1012)
Q Consensus 804 ~~~~i~~~l~Ge~~GT~I 821 (1012)
.|+++.++|.|+ ||.|
T Consensus 242 ~~~~l~~~l~g~--gT~i 257 (257)
T cd04251 242 ADSPISSALNGG--GTVI 257 (257)
T ss_pred CccHHHHHHcCC--CcCC
Confidence 999999999985 9975
No 86
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.87 E-value=1.7e-21 Score=228.52 Aligned_cols=206 Identities=21% Similarity=0.222 Sum_probs=160.9
Q ss_pred cccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccccCCCc------------------------------
Q psy3752 610 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDR------------------------------ 655 (1012)
Q Consensus 610 ~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~~~~~------------------------------ 655 (1012)
.-+.+.++++++.|....+.|+++|+||||+ +.+..........+.
T Consensus 12 v~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~ 91 (441)
T TIGR00657 12 VGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIPQAIAEELKRL 91 (441)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4567889999999998878899999999983 222111110000000
Q ss_pred ---------chHHHHHHHHHHH--HHHHHHHHHHhcCCceeEeehhchhhh----------hhhcchHHHHHHhhCCCEE
Q psy3752 656 ---------STADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF----------LESYIPLNAIKYLEEGKVV 714 (1012)
Q Consensus 656 ---------~~~~~~~~~~~~~--~~~~l~~~l~~~gi~a~~l~~~~~~~~----------~~~~~~~~l~~~L~~g~VP 714 (1012)
.......+++.|+ ++.+++.+|+++|++++++++.+.... ....+...+..+++.|.||
T Consensus 92 ~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~vp 171 (441)
T TIGR00657 92 LDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIP 171 (441)
T ss_pred HHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCEE
Confidence 0112233445553 677899999999999999999875221 4556788999999999999
Q ss_pred EEcCcCCC---CCC------ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcc
Q psy3752 715 IFAGGIGN---PFF------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIM 782 (1012)
Q Consensus 715 Vi~G~~g~---~~~------s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~ 782 (1012)
|++|+.|. +.. .+|++|+.+|.+|+|+.|++||||||||++||+.+|+++++++++++|+.+ .|++++
T Consensus 172 Vv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~ 251 (441)
T TIGR00657 172 VVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVL 251 (441)
T ss_pred EEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCccc
Confidence 99997542 222 279999999999999999999999999999999999999999999998876 799999
Q ss_pred cHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 783 DSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 783 ~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
++.|+.+|.++++|++|.|++.| +..||+|.+.
T Consensus 252 ~~~a~~~~~~~~i~i~i~~~~~~---------~~~GT~I~~~ 284 (441)
T TIGR00657 252 HPRTLEPAMRAKIPIVVKSTFNP---------EAPGTLIVAS 284 (441)
T ss_pred CHHHHHHHHHcCCeEEEecCCCC---------CCCceEEEeC
Confidence 99999999999999999999987 3459999764
No 87
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.87 E-value=7.2e-22 Score=214.37 Aligned_cols=201 Identities=17% Similarity=0.190 Sum_probs=150.8
Q ss_pred hhhHhHHHHHHHHHh-CCCeEEEEEccchHhhhhcccc-------cCC---CcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3752 614 SIIKNIISEISEIVS-CGIELAIVIGGGNICRGISNKI-------QNI---DRSTADYMGMLATIINSLALFDILNKSGI 682 (1012)
Q Consensus 614 ~~i~~ia~~I~~l~~-~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~gi 682 (1012)
+.+++++++|+.+.. .|.++|||||||.+........ .++ +...++...++..+..+..+.+.+.++|+
T Consensus 14 ~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l~~~Gv 93 (252)
T cd04249 14 AALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQAIKAGL 93 (252)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHHHhCCC
Confidence 568899999998754 5789999999996543322221 111 33444444444344455566677779999
Q ss_pred ceeEeehhchhh--------------hhhhcchHHHHHHhhCCCEEEEcCc----CC-CCCCccHHHHHHHHHhcCCceE
Q psy3752 683 ISHVMSAISIEK--------------FLESYIPLNAIKYLEEGKVVIFAGG----IG-NPFFTTDTTAALRAAEIKAEII 743 (1012)
Q Consensus 683 ~a~~l~~~~~~~--------------~~~~~~~~~l~~~L~~g~VPVi~G~----~g-~~~~s~D~~Aa~lA~~l~Ad~l 743 (1012)
+++++++.+.+. .+..++.+.+..+++.|.|||+++. .| ..++++|++|+++|..|+|| +
T Consensus 94 ~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~ 172 (252)
T cd04249 94 KPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-L 172 (252)
T ss_pred CceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-E
Confidence 999999986521 2445788999999999999999972 11 12466999999999999999 6
Q ss_pred EeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHH-HhCCCcEEEEecCCchhHHHHhcCC
Q psy3752 744 LKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC-RDQKLPIRVFSIIKSGALKRVIEGK 815 (1012)
Q Consensus 744 iilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a-~~~gi~v~I~~g~~~~~i~~~l~Ge 815 (1012)
+++|||||||++|| ++|++++..++.+ +|+|..++.++..+ ...+++++|++|..|+++.+++.|+
T Consensus 173 i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~ 246 (252)
T cd04249 173 VLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGE 246 (252)
T ss_pred EEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCC
Confidence 78999999998765 5778888766544 57888888766555 5556899999999999999999999
Q ss_pred CcceEE
Q psy3752 816 NEGTLV 821 (1012)
Q Consensus 816 ~~GT~I 821 (1012)
.+||+|
T Consensus 247 ~~GT~I 252 (252)
T cd04249 247 PVGTKI 252 (252)
T ss_pred CCCcCC
Confidence 999986
No 88
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.86 E-value=7.5e-21 Score=207.25 Aligned_cols=153 Identities=19% Similarity=0.220 Sum_probs=131.0
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCCC-----
Q psy3752 661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF----- 724 (1012)
Q Consensus 661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~----- 724 (1012)
..+++.| +++.+|+.+|++.|+++..+++.+++.. +.....+.+.+.++.+.|||++||.|.+.
T Consensus 113 d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~t 192 (288)
T cd04245 113 DALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIK 192 (288)
T ss_pred HHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEE
Confidence 3444444 4788899999999999999998876322 11225677888888899999999988542
Q ss_pred ----CccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcE
Q psy3752 725 ----FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI 797 (1012)
Q Consensus 725 ----~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v 797 (1012)
-++|+.|+.+|..|+||.+.+|||||||||+||+.+|+|+.+++++|+|+.+ .|.+++|+.|+.+|.++++|+
T Consensus 193 tLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi 272 (288)
T cd04245 193 TFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPI 272 (288)
T ss_pred EcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcE
Confidence 2399999999999999999999999999999999999999999999999988 799999999999999999999
Q ss_pred EEEecCCchhHHHHhcCCCcceEEE
Q psy3752 798 RVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 798 ~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
+|.|.++|+ ..||+|.
T Consensus 273 ~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 273 NIKNTNHPE---------APGTLIV 288 (288)
T ss_pred EEeeCCCCC---------CCCceeC
Confidence 999999873 4699984
No 89
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.86 E-value=2.7e-21 Score=212.18 Aligned_cols=153 Identities=22% Similarity=0.304 Sum_probs=126.4
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhh---------hhhhcchHHHHHHhhC-CCEEEEcCcCCCC--CCc
Q psy3752 661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEK---------FLESYIPLNAIKYLEE-GKVVIFAGGIGNP--FFT 726 (1012)
Q Consensus 661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~---------~~~~~~~~~l~~~L~~-g~VPVi~G~~g~~--~~s 726 (1012)
..+++.| +++.+++.+|++.|+++..+++.++-. +........+...+.. +.|||++||.|.. +.+
T Consensus 118 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ 197 (294)
T cd04257 118 AKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGET 197 (294)
T ss_pred hhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCE
Confidence 3444444 478889999999999999999877511 0111224566666665 8999999988732 222
Q ss_pred -------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752 727 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 796 (1012)
Q Consensus 727 -------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~ 796 (1012)
+|++|+++|..++||.+++|||||||||+||+.+|+|++|+.++++|+.+ .|.++.++.|+.+|.++|+|
T Consensus 198 ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ip 277 (294)
T cd04257 198 TTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIP 277 (294)
T ss_pred EECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCC
Confidence 79999999999999999999999999999999999999999999999877 79999999999999999999
Q ss_pred EEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 797 IRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 797 v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
++|.|+++| +..||+|+
T Consensus 278 i~i~~~~~p---------~~~GT~I~ 294 (294)
T cd04257 278 ILIKNTFNP---------EAPGTLIS 294 (294)
T ss_pred EEEeeCCCC---------CCCCCEeC
Confidence 999999987 35699984
No 90
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.86 E-value=3.2e-21 Score=204.21 Aligned_cols=170 Identities=23% Similarity=0.432 Sum_probs=133.4
Q ss_pred CceEEEEecCCC----CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKE 76 (1012)
Q Consensus 1 I~ye~~~Vd~~~----~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~ 76 (1012)
|+|+.+.+++.. .+++|+++||+|+||+|++||.+|+||.+|++||+++|++..|+|.++.+++++++|+.++...
T Consensus 23 i~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~ 102 (210)
T TIGR01262 23 IDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPADPIKRARVRALALLIACD 102 (210)
T ss_pred CCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 689999998732 4688999999999999999999999999999999999998789999999999999997666543
Q ss_pred HHHH----HHHhhhcc-ccccHHHHHHHHHHHHHHHHHHHhcccC--CCcccCCCcCHHHHHHHHHhhhhhhccccccCC
Q psy3752 77 IFIH----LYMLENER-NKTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKS 149 (1012)
Q Consensus 77 ~~~~----~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~Le~~L~~--~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~ 149 (1012)
+... ........ ........+...+.+.+.|..||++|++ ++||+|+++|+||+++++++.++...+.++ +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~~~~~l~~~~~~~~~~-~~ 181 (210)
T TIGR01262 103 IHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTLADLCLVPQVYNAERFGVDL-TP 181 (210)
T ss_pred cChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCHHHHHHHHHHHHHHHcCCCc-cc
Confidence 3211 11111111 0111112233455688999999999985 469999999999999999998876555544 56
Q ss_pred CchhHHHHHHHhcCCccccccc
Q psy3752 150 ASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 150 ~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
||+|.+|+++|.+||+|+++..
T Consensus 182 ~p~l~~~~~~~~~rp~~~~~~~ 203 (210)
T TIGR01262 182 YPTLRRIAAALAALPAFQRAHP 203 (210)
T ss_pred chHHHHHHHHHhcCHHHHHhCc
Confidence 9999999999999999998765
No 91
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.86 E-value=6.9e-21 Score=200.35 Aligned_cols=170 Identities=24% Similarity=0.345 Sum_probs=134.3
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFI 79 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~ 79 (1012)
++|+.+.+++...++++.++||.|+||+|+ ++|.+|+||.+|++||++++|++.|+|.++.+++++++|..+....+..
T Consensus 24 v~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~ 103 (202)
T PRK10357 24 ITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDPLAALRVRQLEALADGIMDA 103 (202)
T ss_pred CCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 689999999887888899999999999998 6889999999999999999988789999999999999886544333221
Q ss_pred HH--HH-hhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccc--cccCCCchhH
Q psy3752 80 HL--YM-LENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGI--NLSKSASPLI 154 (1012)
Q Consensus 80 ~~--~~-~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~--~l~~~~P~L~ 154 (1012)
.. .. .............+.....+.+.|+.||++|.+++ |+|+++|+||+++++.+.++..... .+...||+|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~ 182 (202)
T PRK10357 104 ALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLV 182 (202)
T ss_pred HHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHHHHHHHHHHhcccCcchhhcChHHH
Confidence 11 11 11111122233345566788999999999998888 9999999999999999987755322 2345699999
Q ss_pred HHHHHHhcCCccccccc
Q psy3752 155 KYAERIFSRPSYMESLT 171 (1012)
Q Consensus 155 aw~~ri~~rp~~~~~lt 171 (1012)
+|++++.+||+|+++.+
T Consensus 183 ~~~~~i~~rp~~~~~~~ 199 (202)
T PRK10357 183 KLVENLFQRESFARTEP 199 (202)
T ss_pred HHHHHHhcChhhhhcCC
Confidence 99999999999998765
No 92
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.86 E-value=6.9e-21 Score=202.05 Aligned_cols=160 Identities=18% Similarity=0.338 Sum_probs=125.6
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC---CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY---PQLMSSDPLMRARARLMLLNFEKEI 77 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~---~~L~p~~~~era~v~~~~~~~~~~~ 77 (1012)
|+|+.+.||+.++++||+++||.|+||+|+++|.+|+||.+|++||+++|++ +.+.|.++..++....+
T Consensus 34 i~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~~~~~~~~~~l-------- 105 (236)
T TIGR00862 34 VVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKHPESNTAGLDI-------- 105 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHH--------
Confidence 6899999999999999999999999999999999999999999999999975 44666666555432211
Q ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc------------------CCCcccCCCcCHHHHHHHHHhhhh
Q psy3752 78 FIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL------------------KNKYMLGDEFSMLDVVIAPLLWRL 139 (1012)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~------------------~~~fL~Gd~~TlADi~l~~~L~~l 139 (1012)
+..+........ ....+...+.+.+.|..||++|. +++||.|+++|+|||+++|+++++
T Consensus 106 ~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~l~p~l~~l 182 (236)
T TIGR00862 106 FAKFSAYIKNSN---PEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCNLLPKLHIV 182 (236)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhHHHHHHHHHH
Confidence 111111111111 11223344567888888998886 579999999999999999999988
Q ss_pred hhc-----cccccCCCchhHHHHHHHhcCCccccccc
Q psy3752 140 DYY-----GINLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 140 ~~~-----~~~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
... ++++.+.||+|.+|++++.+||+|+.+++
T Consensus 183 ~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p 219 (236)
T TIGR00862 183 KVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCP 219 (236)
T ss_pred HHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCC
Confidence 743 77777889999999999999999999887
No 93
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.86 E-value=5.7e-21 Score=209.63 Aligned_cols=225 Identities=17% Similarity=0.154 Sum_probs=161.0
Q ss_pred HHHHHHHhhhhhhhcCC-CCcc--cchhhHhHHHHHHHHHhCCCeEEEEEccchH---hhhhcccc---cCCCcchHHHH
Q psy3752 591 LAVLKAQQLGEALMKGD-AYNI--NSSIIKNIISEISEIVSCGIELAIVIGGGNI---CRGISNKI---QNIDRSTADYM 661 (1012)
Q Consensus 591 i~v~K~~~~g~~~~~~~-~~~i--d~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~---~~~~~~~~---~~~~~~~~~~~ 661 (1012)
++|+|+ +|.++...+ ...+ ....+..++++|+.|...|+++|||||||.. .+...... .+++..+++.+
T Consensus 4 ~iVI~l--GGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~ 81 (316)
T PRK12352 4 LVVVAI--GGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANC 81 (316)
T ss_pred EEEEEE--ChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHH
Confidence 567776 666664321 1111 2357899999999999999999999999833 22222222 24455666655
Q ss_pred HHHHHHH----HHHHHHHHHHhcCCce-------eEeehhchhh------------------------------------
Q psy3752 662 GMLATII----NSLALFDILNKSGIIS-------HVMSAISIEK------------------------------------ 694 (1012)
Q Consensus 662 ~~~~~~~----~~~~l~~~l~~~gi~a-------~~l~~~~~~~------------------------------------ 694 (1012)
.....+. ....|+..|..+|..+ +.+++.|.+.
T Consensus 82 v~~~~g~i~~~i~~~L~~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~ 161 (316)
T PRK12352 82 VADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY 161 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCe
Confidence 5555543 4555666688777443 4445332211
Q ss_pred --------hhhhcchHHHHHHhhCCCEEEEcCcCCCCC--------------CccHHHHHHHHHhcCCceEEeeeccccc
Q psy3752 695 --------FLESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGI 752 (1012)
Q Consensus 695 --------~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~--------------~s~D~~Aa~lA~~l~Ad~liilTDVdGV 752 (1012)
.++.++.+.+..+|++|+|||.+|+.|.|. +.+|++|+.+|.+|+||+|+|+|||+||
T Consensus 162 rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV 241 (316)
T PRK12352 162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV 241 (316)
T ss_pred EEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhh
Confidence 145678899999999999966665544432 3489999999999999999999999999
Q ss_pred cccCCcCCcCcccccccCHHHHHh--------hhcCcccHHHHHHHHhCCC-cEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 753 YNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 753 y~~dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
|+++|+ |++++|++++..++.+ .|+|.+|+.||..+.+.|+ +++|++ ++.+.++|.|+ .||+|..
T Consensus 242 ~~d~~~--~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 242 CIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred ccCCCC--CCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 988764 7788999999877654 3789999998866666555 788886 77799999998 8999964
No 94
>PRK08373 aspartate kinase; Validated
Probab=99.86 E-value=7.6e-21 Score=211.14 Aligned_cols=155 Identities=24% Similarity=0.296 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhh------------hhhcchHHHHHHhhCCCEEEEcCcCCCC-C-
Q psy3752 659 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNP-F- 724 (1012)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~------------~~~~~~~~l~~~L~~g~VPVi~G~~g~~-~- 724 (1012)
|.....+...++.+++.+|...|+++..++++++-.. ....+.+.+..+++.|.|||++|+.|+. +
T Consensus 103 D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~ 182 (341)
T PRK08373 103 DYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNGF 182 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCCe
Confidence 4444444444788899999999999999998765110 1123457788889999999999988742 2
Q ss_pred C------ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCC
Q psy3752 725 F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL 795 (1012)
Q Consensus 725 ~------s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi 795 (1012)
. ++|++|+.+|..|+|+.++++|||||||++||+.+|+|++|++++++|+.+ .|++++++.|+++|.+ ++
T Consensus 183 ~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~I 261 (341)
T PRK08373 183 RATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-KI 261 (341)
T ss_pred EEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-CC
Confidence 1 279999999999999999999999999999999999999999999999987 7999999999999999 99
Q ss_pred cEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 796 PIRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 796 ~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
|++|.|.++| ..||+|+..
T Consensus 262 pi~v~~t~~~----------~~GT~I~~~ 280 (341)
T PRK08373 262 PIIFGRTRDW----------RMGTLVSNE 280 (341)
T ss_pred cEEEecCCCC----------CCCcEEecC
Confidence 9999998765 259999754
No 95
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.85 E-value=1.4e-20 Score=206.32 Aligned_cols=153 Identities=25% Similarity=0.318 Sum_probs=126.2
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh-------hhhc--chHHHHHHhhC-CCEEEEcCcCCC--CCCc
Q psy3752 661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF-------LESY--IPLNAIKYLEE-GKVVIFAGGIGN--PFFT 726 (1012)
Q Consensus 661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~-------~~~~--~~~~l~~~L~~-g~VPVi~G~~g~--~~~s 726 (1012)
..+++.| +++.+++.+|.+.|+++..+++.++-.. .... ....+..++.. +.|||++||.|. ++.+
T Consensus 117 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ 196 (293)
T cd04243 117 AEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGET 196 (293)
T ss_pred hHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCE
Confidence 3444444 4788899999999999999998654110 0011 13467777776 899999998863 2222
Q ss_pred -------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752 727 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 796 (1012)
Q Consensus 727 -------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~ 796 (1012)
+|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+ .|.++.++.|+.+|.++|+|
T Consensus 197 ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~ 276 (293)
T cd04243 197 TTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIP 276 (293)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCc
Confidence 69999999999999999999999999999999999999999999999887 79999999999999999999
Q ss_pred EEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 797 IRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 797 v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
++|.|+++| +..||+|+
T Consensus 277 i~i~~~~~p---------~~~GT~I~ 293 (293)
T cd04243 277 IFIKNTFNP---------EAPGTLIS 293 (293)
T ss_pred EEEecCCCC---------CCCCCEeC
Confidence 999999988 35799984
No 96
>PRK11752 putative S-transferase; Provisional
Probab=99.85 E-value=1.4e-20 Score=205.58 Aligned_cols=169 Identities=19% Similarity=0.255 Sum_probs=128.8
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeC----CEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVER----DLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNF 73 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~dd----g~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~ 73 (1012)
++||.+.|++.. .+++|+++||.|+||+|+++ |.+|+||.||++||+++|+ +|+|.++.+|+++++|+.+.
T Consensus 73 l~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~--~L~P~~~~era~v~~wl~~~ 150 (264)
T PRK11752 73 AEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFG--AFLPKDLAARTETLNWLFWQ 150 (264)
T ss_pred CceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcC--CcCCCCHHHHHHHHHHHHHH
Confidence 479999999865 46899999999999999974 4799999999999999997 49999999999999997655
Q ss_pred HHHH--HH-HHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc------cc
Q psy3752 74 EKEI--FI-HLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY------GI 144 (1012)
Q Consensus 74 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~------~~ 144 (1012)
.... .. .+...............+....++.+.|+.||++|++++||+|++||+|||++++++.++... ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~ 230 (264)
T PRK11752 151 QGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEF 230 (264)
T ss_pred hhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHhhccccccccc
Confidence 4332 11 111111111111122334556678899999999999899999999999999999988665321 11
Q ss_pred cccCCCchhHHHHHHHhcCCccccccc
Q psy3752 145 NLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 145 ~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
...+.||+|.+|+++|.+||+|++.+.
T Consensus 231 ~~~~~~P~L~~w~~rv~~rPs~k~~~~ 257 (264)
T PRK11752 231 LDVGSYKHVQRWAKEIAERPAVKRGRI 257 (264)
T ss_pred cCcccCHHHHHHHHHHHhCHHHHHHHh
Confidence 113569999999999999999998765
No 97
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.84 E-value=4.2e-20 Score=201.74 Aligned_cols=157 Identities=25% Similarity=0.315 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhh---------hhhhcch---HHHHHHhhCCCEEEEcCcCCCC-
Q psy3752 657 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIEK---------FLESYIP---LNAIKYLEEGKVVIFAGGIGNP- 723 (1012)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~---------~~~~~~~---~~l~~~L~~g~VPVi~G~~g~~- 723 (1012)
..+.+...+..+++.+++.+|++.|+++..+++.++-. +...... ......+..+.|||++||.|.+
T Consensus 112 ~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~ 191 (292)
T cd04258 112 SRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTE 191 (292)
T ss_pred hHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccCC
Confidence 34555555555688999999999999999999877510 0000011 1222234567999999998853
Q ss_pred --CCc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHh
Q psy3752 724 --FFT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRD 792 (1012)
Q Consensus 724 --~~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~ 792 (1012)
..+ +|++|+.+|..++|+.+++||||||||++||+.+|+|++++.++++|+.+ .|.++.++.|..++.+
T Consensus 192 ~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~ 271 (292)
T cd04258 192 KGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIR 271 (292)
T ss_pred CCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHH
Confidence 222 79999999999999999999999999999999999999999999999987 7999999999999999
Q ss_pred CCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 793 QKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 793 ~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
+++|++|.|.++| +..||+|+
T Consensus 272 ~~ipi~i~~~~~p---------~~~GT~I~ 292 (292)
T cd04258 272 KNIPVFVGSSKDP---------EAGGTLIT 292 (292)
T ss_pred cCCcEEEEeCCCC---------CCCCceeC
Confidence 9999999999987 35799984
No 98
>PRK12354 carbamate kinase; Reviewed
Probab=99.84 E-value=8.8e-21 Score=205.32 Aligned_cols=224 Identities=21% Similarity=0.174 Sum_probs=161.4
Q ss_pred HHHHHHhhhhhhhcC-CCCccc--chhhHhHHHHHHHHHhCCCeEEEEEccchH-h--hhhcccccCCCcchHHHHHHHH
Q psy3752 592 AVLKAQQLGEALMKG-DAYNIN--SSIIKNIISEISEIVSCGIELAIVIGGGNI-C--RGISNKIQNIDRSTADYMGMLA 665 (1012)
Q Consensus 592 ~v~K~~~~g~~~~~~-~~~~id--~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~-~--~~~~~~~~~~~~~~~~~~~~~~ 665 (1012)
+|+++ +|.++... .+.... .+.++..|++|+.+.+ |+++||+||+|.+ . +.........++.+++.++...
T Consensus 3 iVial--GGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~s 79 (307)
T PRK12354 3 IVVAL--GGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAET 79 (307)
T ss_pred EEEEe--ccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhcccc
Confidence 34554 66766653 334444 3488999999999988 9999999999854 1 1111222222567889999899
Q ss_pred HHHHHHHHHHHHHhcC----CceeEee----hh---------chh----------------h-----------------h
Q psy3752 666 TIINSLALFDILNKSG----IISHVMS----AI---------SIE----------------K-----------------F 695 (1012)
Q Consensus 666 ~~~~~~~l~~~l~~~g----i~a~~l~----~~---------~~~----------------~-----------------~ 695 (1012)
+++.++.++..|...= +..+... .. .++ . .
T Consensus 80 qg~iGy~l~q~l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P 159 (307)
T PRK12354 80 EGMIGYMLEQELGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRP 159 (307)
T ss_pred cchHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCC
Confidence 9998888888754322 2221111 00 000 0 0
Q ss_pred hhhcchHHHHHHhhCCCEEEEcCcCCCCC--------------CccHHHHHHHHHhcCCceEEeeeccccccccCCcCCc
Q psy3752 696 LESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL 761 (1012)
Q Consensus 696 ~~~~~~~~l~~~L~~g~VPVi~G~~g~~~--------------~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~ 761 (1012)
...++.+.+..+|++|+|||.+|+.|.|. +++|++|+.||.+++||.|+|+|||||||++++ .|
T Consensus 160 ~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p 237 (307)
T PRK12354 160 KRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KP 237 (307)
T ss_pred cceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CC
Confidence 11357889999999999988887766542 347999999999999999999999999999865 47
Q ss_pred CcccccccCHHHHHh----hhcCcccHHHHHH-HHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 762 SAIIYKKITFDEVIS----KKLEIMDSTAFSF-CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 762 ~a~~i~~i~~~e~~~----~G~~v~~~~aa~~-a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
++++|++++.+++.+ .|+|.+|+.|+.. +.+.+.+++|. .++.+.++|.|+ .||+|.+.
T Consensus 238 ~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 238 TQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPE 301 (307)
T ss_pred CCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecC
Confidence 899999999988765 6999999998855 55556577774 356789999997 79999864
No 99
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.84 E-value=1.9e-20 Score=205.22 Aligned_cols=153 Identities=23% Similarity=0.327 Sum_probs=123.3
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhhhh-------hcc---hHHHHHHhh--CCCEEEEcCcCCCCC---
Q psy3752 662 GMLATI--INSLALFDILNKSGIISHVMSAISIEKFLE-------SYI---PLNAIKYLE--EGKVVIFAGGIGNPF--- 724 (1012)
Q Consensus 662 ~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~-------~~~---~~~l~~~L~--~g~VPVi~G~~g~~~--- 724 (1012)
.+++.| +++.+++.+|++.|+++..+++.++-.... .+. .+.+...+. .+.|||++||+|...
T Consensus 127 ~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~ 206 (306)
T cd04247 127 LVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGGL 206 (306)
T ss_pred HHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCCC
Confidence 444444 478889999999999999999877611100 110 112222222 578999999988422
Q ss_pred Cc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCC
Q psy3752 725 FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL 795 (1012)
Q Consensus 725 ~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi 795 (1012)
.+ +|++|+++|..|+|+.+++||||||||++||+.+|+|++|++++++|+.+ .|+++.|+.++.+|.+++|
T Consensus 207 ~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~I 286 (306)
T cd04247 207 LSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARI 286 (306)
T ss_pred eEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcCC
Confidence 22 99999999999999999999999999999999999999999999999987 6999999999999999999
Q ss_pred cEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 796 PIRVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 796 ~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
|++|.|.++| +..||+|.+
T Consensus 287 pi~i~nt~~P---------~~~GT~I~~ 305 (306)
T cd04247 287 PIRIKNVENP---------RGEGTVIYP 305 (306)
T ss_pred cEEEecCCCC---------CCCCcEEcC
Confidence 9999999988 356999975
No 100
>PRK09411 carbamate kinase; Reviewed
Probab=99.84 E-value=3.6e-20 Score=198.55 Aligned_cols=216 Identities=21% Similarity=0.228 Sum_probs=164.7
Q ss_pred hhhhhhcC-CCCcccch--hhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccccCCCcchHHHHHHHHHHHHHH
Q psy3752 599 LGEALMKG-DAYNINSS--IIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGMLATIINSL 671 (1012)
Q Consensus 599 ~g~~~~~~-~~~~id~~--~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1012)
+|.++... ........ .++..|+.|+.+.+. |++||+||.| +.+++.... ...++.++|.++..++|+.++
T Consensus 9 GGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~-~~~~~~pld~~~a~sqG~iGy 86 (297)
T PRK09411 9 GGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAW-KEVEPYPLDVLVAESQGMIGY 86 (297)
T ss_pred CchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhh-cCCCCCCchhhhhhcccHHHH
Confidence 56666542 22333334 788899999999887 9999999986 444432222 234778999999999999999
Q ss_pred HHHHHHHhcCCceeEee--------hhch------------------------------------------hhhhhhcch
Q psy3752 672 ALFDILNKSGIISHVMS--------AISI------------------------------------------EKFLESYIP 701 (1012)
Q Consensus 672 ~l~~~l~~~gi~a~~l~--------~~~~------------------------------------------~~~~~~~~~ 701 (1012)
+|+..|...++..-..+ +.|- ......++.
T Consensus 87 ~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P~~iVe~ 166 (297)
T PRK09411 87 MLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDS 166 (297)
T ss_pred HHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCCcceECH
Confidence 99999998875431111 1110 000245678
Q ss_pred HHHHHHhhCCCEEEEcCcCCCC----------CCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCH
Q psy3752 702 LNAIKYLEEGKVVIFAGGIGNP----------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF 771 (1012)
Q Consensus 702 ~~l~~~L~~g~VPVi~G~~g~~----------~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~ 771 (1012)
+.+..++++|.|||.+|+.|.| ++++|.+|+.||..|+||+|+|+|||||||++++ .|++++|++++.
T Consensus 167 ~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it~ 244 (297)
T PRK09411 167 EAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHATP 244 (297)
T ss_pred HHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcCH
Confidence 8999999999998888765544 2449999999999999999999999999999764 478999999999
Q ss_pred HHHHh----hhcCcccHHHH-HHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 772 DEVIS----KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 772 ~e~~~----~G~~v~~~~aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
+++.. .|+|.+|+.|+ +++...|.+++|.+ ++.+.++|.|+ .||+|.
T Consensus 245 ~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 245 DELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 88754 69999999987 66666778888864 56788999998 699985
No 101
>PLN02378 glutathione S-transferase DHAR1
Probab=99.84 E-value=2.3e-20 Score=197.89 Aligned_cols=161 Identities=22% Similarity=0.401 Sum_probs=124.0
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~ 80 (1012)
+||+.+.||+..++++|+++||.|+||+|++||.+|+||.+|++||+++||+..+. ++.++++++..+. ..+ ..
T Consensus 35 l~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~--~~~~~a~i~~~~~---~~~-~~ 108 (213)
T PLN02378 35 LTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK--TPAEFASVGSNIF---GTF-GT 108 (213)
T ss_pred CCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHH---HHH-HH
Confidence 68999999998899999999999999999999999999999999999999876663 5677777655321 111 11
Q ss_pred HHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHHHHhhhhhhc-----cccccCCCchh
Q psy3752 81 LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWRLDYY-----GINLSKSASPL 153 (1012)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~~~L~~l~~~-----~~~l~~~~P~L 153 (1012)
+. ...... +.....+.+.|..+|++|. +++|++|+++|+||+++++++.++... +++..+.||+|
T Consensus 109 ~~---~~~~~~-----~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~~~~~~~p~l 180 (213)
T PLN02378 109 FL---KSKDSN-----DGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHV 180 (213)
T ss_pred HH---hcCChh-----hHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCCCchhHhHHH
Confidence 11 111111 2233567788999999997 578999999999999999998776432 22334679999
Q ss_pred HHHHHHHhcCCccccccchhhhh
Q psy3752 154 IKYAERIFSRPSYMESLTPAEKI 176 (1012)
Q Consensus 154 ~aw~~ri~~rp~~~~~lt~~~~l 176 (1012)
.+|+++|.+||+|++++. .+.+
T Consensus 181 ~~w~~~~~~rpa~~~~~~-~~~~ 202 (213)
T PLN02378 181 HNYMKTLFSLDSFEKTKT-EEKY 202 (213)
T ss_pred HHHHHHHhcCCCeecccC-ChHH
Confidence 999999999999998877 4433
No 102
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.84 E-value=1.2e-20 Score=196.82 Aligned_cols=180 Identities=21% Similarity=0.258 Sum_probs=141.6
Q ss_pred hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcc--cccCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchh
Q psy3752 616 IKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIE 693 (1012)
Q Consensus 616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~ 693 (1012)
+..+.+.+..+ .|++++||.|||++++.+.. ...++++..+|+++++++.+++.+|+..+...+
T Consensus 12 ~~~~~~~l~~~--~~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~------------ 77 (203)
T cd04240 12 AVRLLRWLKTL--SGGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLV------------ 77 (203)
T ss_pred HHHHHHHHHhc--cCCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCccc------------
Confidence 44555555544 28899999999988544433 345789999999999999999998764332221
Q ss_pred hhhhhcchHHHHHHhhCCCEEEEcCc--------CC-CCCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcc
Q psy3752 694 KFLESYIPLNAIKYLEEGKVVIFAGG--------IG-NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAI 764 (1012)
Q Consensus 694 ~~~~~~~~~~l~~~L~~g~VPVi~G~--------~g-~~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~ 764 (1012)
..+...+..++..|.|||+.+. .+ .-++|+|++|+++|..++|++|+++|||||||++| ++
T Consensus 78 ----~~~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~ 147 (203)
T cd04240 78 ----ARTLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GK 147 (203)
T ss_pred ----cCCHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------Cc
Confidence 1234567778999999999873 11 12378999999999999999999999999999864 78
Q ss_pred cccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCC-CcceEE
Q psy3752 765 IYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLV 821 (1012)
Q Consensus 765 ~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge-~~GT~I 821 (1012)
++++++..++.. ..+++..+++.+.++|++++|+||..|+++.+++.|+ .+||.|
T Consensus 148 ~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 148 LVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred CccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 999999887643 4445666788899999999999999999999999998 789975
No 103
>PLN02551 aspartokinase
Probab=99.84 E-value=2.1e-19 Score=211.05 Aligned_cols=155 Identities=21% Similarity=0.256 Sum_probs=127.6
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHh-----hCCCEEEEcCcCCCC-
Q psy3752 661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYL-----EEGKVVIFAGGIGNP- 723 (1012)
Q Consensus 661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L-----~~g~VPVi~G~~g~~- 723 (1012)
..+++.| +++.+|+.+|++.|+++..+++.+++.+ +.......+...+ ..+.|||++||+|..
T Consensus 166 d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~ 245 (521)
T PLN02551 166 DYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGW 245 (521)
T ss_pred HHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCC
Confidence 4444455 4788899999999999999999877311 2122333343433 356899999998853
Q ss_pred --C-Cc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHH
Q psy3752 724 --F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR 791 (1012)
Q Consensus 724 --~-~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~ 791 (1012)
+ .+ +|++|+.+|.+|+|+.+.|||||||||++||+..|+|+.+++++|+|+.+ .|++++++.|..+|.
T Consensus 246 ~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~ 325 (521)
T PLN02551 246 KTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAR 325 (521)
T ss_pred CCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHH
Confidence 2 22 89999999999999999999999999999999999999999999999988 799999999999999
Q ss_pred hCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 792 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 792 ~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
+++||++|.|.++| +..||+|+..
T Consensus 326 ~~~Ipi~vknt~~p---------~~~GT~I~~~ 349 (521)
T PLN02551 326 EGDIPVRVKNSYNP---------TAPGTLITKT 349 (521)
T ss_pred HCCceEEEEecCCC---------CCCCcEEecc
Confidence 99999999999887 3569999754
No 104
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.84 E-value=4.3e-21 Score=207.85 Aligned_cols=185 Identities=21% Similarity=0.283 Sum_probs=140.5
Q ss_pred hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCc-----------chHHHHHHHHHHHHHH-----HHHHHHHh
Q psy3752 616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDR-----------STADYMGMLATIINSL-----ALFDILNK 679 (1012)
Q Consensus 616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-----~l~~~l~~ 679 (1012)
+.+++++|+.+.+.|+++|||||||.......... ++.+ ..............+. .+.+.+..
T Consensus 19 ~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 97 (242)
T PF00696_consen 19 LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKY-GIEPKFVDGSRVTDIETGLIITMAAAAELNRDALLDEIVSAGER 97 (242)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHC-THTTSEETHHCHBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhc-cCCcccchhhhhhhhhhhHHHHHHHhhccccchhHHHHHHhhhh
Confidence 99999999999999999999999986665544442 1111 1122222222222223 56667888
Q ss_pred cCCceeEeehhchhhhh-----hhcchHHHHHHhhCCCEEEEcCcCC-----C----CCCccHHHHHHHHHhcCCceEEe
Q psy3752 680 SGIISHVMSAISIEKFL-----ESYIPLNAIKYLEEGKVVIFAGGIG-----N----PFFTTDTTAALRAAEIKAEIILK 745 (1012)
Q Consensus 680 ~gi~a~~l~~~~~~~~~-----~~~~~~~l~~~L~~g~VPVi~G~~g-----~----~~~s~D~~Aa~lA~~l~Ad~lii 745 (1012)
++..++.+.+.+.+... ..++...+..+|++|.|||++|+.+ . .+.++|++|+.||.+|+|+.|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~ 177 (242)
T PF00696_consen 98 LGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIF 177 (242)
T ss_dssp CTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhh
Confidence 89888887777653221 2457889999999999999998542 1 34569999999999999999999
Q ss_pred eeccccccccCCcCCcCcccccccCHHHHHh--------hhcC-cccHHHHHHHHhCCCcEEEEe
Q psy3752 746 ATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLE-IMDSTAFSFCRDQKLPIRVFS 801 (1012)
Q Consensus 746 lTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~--------~G~~-v~~~~aa~~a~~~gi~v~I~~ 801 (1012)
+|||||||++||+.+|+++++++++++|+.+ .|+| +.+..|.+.+++++++++|+|
T Consensus 178 ~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 178 LTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp EESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 9999999999999999999999999998876 3555 455567777788899999986
No 105
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.83 E-value=4.9e-20 Score=203.55 Aligned_cols=142 Identities=20% Similarity=0.256 Sum_probs=117.4
Q ss_pred HHHHHHhcCCceeEeehhchhhh------------hhhcchHHHHHHhhCCCEEEEcCcCCCCC--C------ccHHHHH
Q psy3752 673 LFDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNPF--F------TTDTTAA 732 (1012)
Q Consensus 673 l~~~l~~~gi~a~~l~~~~~~~~------------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~--~------s~D~~Aa 732 (1012)
+++.|-..|+++..++++++-.. ....+.+.+..+++.|.|||++|+.|+.. . ++|++|+
T Consensus 107 lSa~Lla~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa 186 (327)
T TIGR02078 107 LSAVIFAEGINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAV 186 (327)
T ss_pred HHHHHHHccCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHH
Confidence 44444455899999888765110 12335567788899999999999877431 1 3799999
Q ss_pred HHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHH
Q psy3752 733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK 809 (1012)
Q Consensus 733 ~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~ 809 (1012)
.+|..|+||.+++||||||||++||+.+|+|++|++++++|+.+ .|++++|+.|+++|.++|+|++|.|.++|
T Consensus 187 ~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~---- 262 (327)
T TIGR02078 187 ALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDW---- 262 (327)
T ss_pred HHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCc----
Confidence 99999999999999999999999999999999999999999876 68889999999999999999999999875
Q ss_pred HHhcCCCcceEEEEe
Q psy3752 810 RVIEGKNEGTLVYEI 824 (1012)
Q Consensus 810 ~~l~Ge~~GT~I~~~ 824 (1012)
+ .||+|+..
T Consensus 263 -----~-~GT~I~~~ 271 (327)
T TIGR02078 263 -----R-MGTLISNR 271 (327)
T ss_pred -----C-CCcEEecC
Confidence 2 59999754
No 106
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.82 E-value=2.9e-20 Score=199.38 Aligned_cols=178 Identities=21% Similarity=0.213 Sum_probs=138.6
Q ss_pred hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-------cCC---CcchHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy3752 616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QNI---DRSTADYMGMLATIINSLALFDILNKSGIISH 685 (1012)
Q Consensus 616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~ 685 (1012)
+.+++++|+.+++.|.++|||||||.......... .+. ++..++...++..+..+..+.+.|.++|++++
T Consensus 15 ~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~~~L~~~G~~a~ 94 (231)
T TIGR00761 15 LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELVALLNKHGINAI 94 (231)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHHHHHHhCCCCcc
Confidence 88999999999999999999999985443322211 111 33344554555555566777789999999999
Q ss_pred Eeehhchhhh---------------hhhcchHHHHHHhhCCCEEEEcCcCCC------CCCccHHHHHHHHHhcCCceEE
Q psy3752 686 VMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAGGIGN------PFFTTDTTAALRAAEIKAEIIL 744 (1012)
Q Consensus 686 ~l~~~~~~~~---------------~~~~~~~~l~~~L~~g~VPVi~G~~g~------~~~s~D~~Aa~lA~~l~Ad~li 744 (1012)
++++.+.+.+ +..++.+.+..++++|.|||++|. |. .++++|++|+.+|.+|+||+|+
T Consensus 95 ~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~-~~~~~g~~~~l~sD~~A~~lA~~l~A~~li 173 (231)
T TIGR00761 95 GLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL-ALTAEGQALNVNADTAAGALAAALGAEKLV 173 (231)
T ss_pred cccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCC-ccCCCCcEEEeCHHHHHHHHHHHcCCCEEE
Confidence 9988764221 345678999999999999999982 32 2356999999999999999999
Q ss_pred eeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCCcEEE
Q psy3752 745 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRV 799 (1012)
Q Consensus 745 ilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi~v~I 799 (1012)
++|||||||++||+ ++|+.++.+++.+ +|+|..|+.++..|.+.|++.+.
T Consensus 174 ~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~ 230 (231)
T TIGR00761 174 LLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVH 230 (231)
T ss_pred EEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEE
Confidence 99999999999873 6889998877644 58999999999999999987554
No 107
>PRK09084 aspartate kinase III; Validated
Probab=99.82 E-value=1.8e-19 Score=210.15 Aligned_cols=157 Identities=22% Similarity=0.263 Sum_probs=127.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHhcCCceeEeehhchhhh-------------hhhcchHHHHHHhhCCCEEEEcCcCCC
Q psy3752 658 ADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF-------------LESYIPLNAIKYLEEGKVVIFAGGIGN 722 (1012)
Q Consensus 658 ~~~~~~~~~~~--~~~~l~~~l~~~gi~a~~l~~~~~~~~-------------~~~~~~~~l~~~L~~g~VPVi~G~~g~ 722 (1012)
.....+++.|+ ++.+++.+|.+.|+++..+++.++-.. ........+.++++.+ |||++||+|.
T Consensus 107 ~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~ 185 (448)
T PRK09084 107 ALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGS 185 (448)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeec
Confidence 34455555554 688899999999999999998765110 0111113455566778 9999998773
Q ss_pred C--C-C------ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHH
Q psy3752 723 P--F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFC 790 (1012)
Q Consensus 723 ~--~-~------s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a 790 (1012)
. + . .+|++|+++|..++||.+++|||||||||+||+.+|+|+++++++|+|+.+ .|+++.++.+..++
T Consensus 186 ~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~ 265 (448)
T PRK09084 186 DEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPA 265 (448)
T ss_pred CCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHH
Confidence 2 1 1 289999999999999999999999999999999999999999999999987 79999999999999
Q ss_pred HhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 791 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 791 ~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
.++++|++|.|+++|+ ..||+|...
T Consensus 266 ~~~~i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 266 VRSNIPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred HHcCCcEEEEeCCCCC---------CCceEEecC
Confidence 9999999999999873 469999653
No 108
>PRK09034 aspartate kinase; Reviewed
Probab=99.82 E-value=2e-19 Score=210.42 Aligned_cols=261 Identities=17% Similarity=0.172 Sum_probs=176.6
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCC--C-Cc
Q psy3752 661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP--F-FT 726 (1012)
Q Consensus 661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~--~-~s 726 (1012)
..+++.| +++.+++.+|++.|+++..+++.+++.+ +.......+...+..+.|||++||+|.. + .+
T Consensus 113 d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~t 192 (454)
T PRK09034 113 DAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQIV 192 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCEE
Confidence 4445555 4788899999999999999998877322 1122455666666678899999998732 1 22
Q ss_pred ------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcE
Q psy3752 727 ------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI 797 (1012)
Q Consensus 727 ------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v 797 (1012)
+|+.|+.+|.+|+||.+.+||||||||++||+.+|+|+.+++++|+|+.+ .|.+++++.|+.+|.++++|+
T Consensus 193 tlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi 272 (454)
T PRK09034 193 TFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPI 272 (454)
T ss_pred ecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999988 799999999999999999999
Q ss_pred EEEecCCchhHHHHhcCCCcceEEEEeeeh----hh------hhh-hhhhH-HHHHHHHHHHHHHHHhhhcCCCCccccc
Q psy3752 798 RVFSIIKSGALKRVIEGKNEGTLVYEIYIM----II------SDI-KKNTK-QKMLNTIKILKENLKKVRTGRANIGMLD 865 (1012)
Q Consensus 798 ~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~~----~~------~~i-~~~~~-~~m~~~~~~~~~~l~~~~~gr~~p~~l~ 865 (1012)
+|.|.++| +..||+|+..... .+ +++ +-.+. ..|......+.+=|.-+...+.++.++.
T Consensus 273 ~v~~~~~p---------~~~GT~I~~~~~~~~~~~Vk~It~~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ 343 (454)
T PRK09034 273 NIKNTNNP---------EDPGTLIVPDRDNKNKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP 343 (454)
T ss_pred EEEcCCCC---------CCCccEEEeccccCccccceEEEecCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc
Confidence 99999887 3469999754211 01 111 00111 1244444555555555555667777663
Q ss_pred c----eEEEecCccc------c----cc---ceeeEeecCCceEEEee------cCcccHHHHHHHHHhcCCCCCcc---
Q psy3752 866 N----IQVKYHEHLT------K----LL---KIANITLFNSHTISIQP------FEKEMSSIIKKAINEANLGLNPT--- 919 (1012)
Q Consensus 866 ~----i~V~~~g~~~------~----l~---~~a~i~~~~~~~l~i~~------~d~~~~~~i~~ai~~s~l~~~p~--- 919 (1012)
. +.+-...... . |. ....|++.+. .-.|+. -.+.....|..++.+.+.++.-.
T Consensus 344 ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~-va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~ 422 (454)
T PRK09034 344 SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHD-LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQG 422 (454)
T ss_pred CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCC-EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 3 4443332211 0 00 1123444332 122222 23667788888887777665322
Q ss_pred cCCCeEEEeCCC
Q psy3752 920 IQGNIIYVSIPP 931 (1012)
Q Consensus 920 ~~~~~i~v~iP~ 931 (1012)
..+..|.+.+|.
T Consensus 423 ~Se~~Is~vV~~ 434 (454)
T PRK09034 423 SSEISIMFGVKN 434 (454)
T ss_pred CCcceEEEEEcH
Confidence 233566677764
No 109
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.82 E-value=1.3e-19 Score=196.90 Aligned_cols=157 Identities=20% Similarity=0.456 Sum_probs=124.0
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~ 80 (1012)
|||+.+.|++.++++||+++||.|+||+|+++|.+|+||.+|++||+++||++.|. ++.+++.++.++.. .+. .
T Consensus 88 i~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~era~i~~~l~~---~~~-~ 161 (265)
T PLN02817 88 LPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPPEKASVGSKIFS---TFI-G 161 (265)
T ss_pred CCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHH---HHH-H
Confidence 68999999998899999999999999999999999999999999999999987664 57788888765321 111 1
Q ss_pred HHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc-CCCcccCCCcCHHHHHHHHHhhhhhhc-----cccccCCCchhH
Q psy3752 81 LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAPLLWRLDYY-----GINLSKSASPLI 154 (1012)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~-~~~fL~Gd~~TlADi~l~~~L~~l~~~-----~~~l~~~~P~L~ 154 (1012)
++ ...... +...+.+.+.|..||++|. +++||+|+++|+||+++++.+.++... ++++.+.||+|.
T Consensus 162 ~~---~~~~~~-----~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~~i~~~~P~L~ 233 (265)
T PLN02817 162 FL---KSKDPG-----DGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLPFVK 233 (265)
T ss_pred Hh---ccCCcc-----hHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccCHHHH
Confidence 11 111111 1123456778899999997 479999999999999999998776532 334456799999
Q ss_pred HHHHHHhcCCccccccc
Q psy3752 155 KYAERIFSRPSYMESLT 171 (1012)
Q Consensus 155 aw~~ri~~rp~~~~~lt 171 (1012)
+|+++|.++|+|+.+..
T Consensus 234 ~w~~ri~~rps~~~~~~ 250 (265)
T PLN02817 234 SYMKNIFSMESFVKTRA 250 (265)
T ss_pred HHHHHHhcchhHhhcCC
Confidence 99999999999999876
No 110
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.81 E-value=1.1e-19 Score=199.02 Aligned_cols=214 Identities=18% Similarity=0.164 Sum_probs=159.4
Q ss_pred HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcc---ccc----C---CCcchHH
Q psy3752 590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTAD 659 (1012)
Q Consensus 590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~---~~~----~---~~~~~~~ 659 (1012)
+++|+|+ +|+++. .+.+++++.+|+.+.+.|+++|||||||.....+.. ... | .++..++
T Consensus 19 ~~~VIKl--GG~ai~--------~~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~ 88 (280)
T cd04237 19 KTFVIAF--GGEAVA--------HPNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALE 88 (280)
T ss_pred CEEEEEE--ChHHhc--------CchHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHH
Confidence 3578885 454432 135688999999999999999999999955443322 211 2 2455566
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEeeh-----hch------------------hhhhhhcchHHHHHHhhCCCEEEE
Q psy3752 660 YMGMLATIINSLALFDILNKSGIISHVMSA-----ISI------------------EKFLESYIPLNAIKYLEEGKVVIF 716 (1012)
Q Consensus 660 ~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~-----~~~------------------~~~~~~~~~~~l~~~L~~g~VPVi 716 (1012)
...++ .+..+..+.+.|+. |++++++++ .+. ...+..++.+.+..+|++|.|||+
T Consensus 89 ~~~~~-~g~v~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~ 166 (280)
T cd04237 89 CVKEA-AGAVRLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL 166 (280)
T ss_pred HHHHH-HHHHHHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEE
Confidence 66666 47778888888855 887764432 111 011345788999999999999999
Q ss_pred cCcC----CC-CCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh--------hhcCccc
Q psy3752 717 AGGI----GN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMD 783 (1012)
Q Consensus 717 ~G~~----g~-~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~ 783 (1012)
++.. |. -++++|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+++.+ +|+|.+|
T Consensus 167 ~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~K 240 (280)
T cd04237 167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL 240 (280)
T ss_pred CCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHH
Confidence 8721 11 146799999999999999999999999999974 357888888766544 4899999
Q ss_pred HHHHHHHHhCCC-cEEEEecCCchhHHHHhc-CCCcceEE
Q psy3752 784 STAFSFCRDQKL-PIRVFSIIKSGALKRVIE-GKNEGTLV 821 (1012)
Q Consensus 784 ~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~-Ge~~GT~I 821 (1012)
+.++..+.+.|+ +++|+++..|+.+...|. .+..||+|
T Consensus 241 v~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 999999999999 899999999999887655 45679975
No 111
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.79 E-value=8.9e-18 Score=208.77 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=125.7
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhh---------hhhhcchHHHHHHh-hCCCEEEEcCcCCCCC---C
Q psy3752 661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEK---------FLESYIPLNAIKYL-EEGKVVIFAGGIGNPF---F 725 (1012)
Q Consensus 661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~---------~~~~~~~~~l~~~L-~~g~VPVi~G~~g~~~---~ 725 (1012)
..+++.| .++.+|+.+|++.|+++..+++.++-. +........+.+.+ +.+.|||++||+|... .
T Consensus 120 d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ 199 (819)
T PRK09436 120 AAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGEL 199 (819)
T ss_pred hheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCE
Confidence 3334444 468889999999999999998866511 01112234555554 4689999999877321 1
Q ss_pred c------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752 726 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 796 (1012)
Q Consensus 726 s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~ 796 (1012)
+ +|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+ .|.+++|+.|+.+|.++|+|
T Consensus 200 ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ip 279 (819)
T PRK09436 200 VTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIP 279 (819)
T ss_pred EEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCce
Confidence 1 89999999999999999999999999999999999999999999999987 69999999999999999999
Q ss_pred EEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 797 IRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 797 v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
++|.|+++|+ ..||+|+..
T Consensus 280 i~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 280 CLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred EEEccCCCCC---------CCceEEEec
Confidence 9999999873 468888653
No 112
>PRK05925 aspartate kinase; Provisional
Probab=99.79 E-value=1.5e-18 Score=200.55 Aligned_cols=155 Identities=23% Similarity=0.218 Sum_probs=124.2
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhhh-----hhcc----hHHHHH-HhhCCCEEEEcCcCCCC--C-C
Q psy3752 661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKFL-----ESYI----PLNAIK-YLEEGKVVIFAGGIGNP--F-F 725 (1012)
Q Consensus 661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~~-----~~~~----~~~l~~-~L~~g~VPVi~G~~g~~--~-~ 725 (1012)
..+++.| .++.+++.+|+..|+++..+++.++-... ...+ ...+.. .++.+.|||++||+|.. + .
T Consensus 103 d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ 182 (440)
T PRK05925 103 ARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGKT 182 (440)
T ss_pred hhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCCE
Confidence 4444455 47888999999999999999987651100 0111 112222 34567899999998732 1 2
Q ss_pred c------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752 726 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 796 (1012)
Q Consensus 726 s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~ 796 (1012)
+ ||++|+++|.+++||.+++|||||||||+||+.+|+|++|++++++|+.+ .|..+.++.++++|.++|+|
T Consensus 183 ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ip 262 (440)
T PRK05925 183 TVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIP 262 (440)
T ss_pred EEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCc
Confidence 2 99999999999999999999999999999999999999999999999876 68999999999999999999
Q ss_pred EEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 797 IRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 797 v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
++|.|+++|+ ..||+|.+.
T Consensus 263 i~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 263 IFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred EEEecCCCCC---------CCccEEecC
Confidence 9999999884 369999763
No 113
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.79 E-value=6.7e-19 Score=190.03 Aligned_cols=196 Identities=15% Similarity=0.154 Sum_probs=146.6
Q ss_pred hHhHHHHHHHHHhCCCeEEEEEccchHhhhhccc---cc----C---CCcchHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy3752 616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 685 (1012)
Q Consensus 616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~---~~----~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~ 685 (1012)
+.+++++|+.|+..|.++|||||||.+....... .. + .++..++...++.. ..+..+++.|.++|++++
T Consensus 14 l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~-~vn~~iv~~l~~~g~~a~ 92 (248)
T cd04252 14 LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFL-EENLKLVEALERNGARAR 92 (248)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcc
Confidence 7899999999998999999999999655544332 21 1 14455566666554 567778888999999999
Q ss_pred Eeehhchh------------hhhhhcchHHHHHHhhCCCEEEEcCc----CCC-CCCccHHHHHHHHHhcCCceEEeeec
Q psy3752 686 VMSAISIE------------KFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATK 748 (1012)
Q Consensus 686 ~l~~~~~~------------~~~~~~~~~~l~~~L~~g~VPVi~G~----~g~-~~~s~D~~Aa~lA~~l~Ad~liilTD 748 (1012)
++++..+. ..+..++.+.+..+|+.|+|||+++. .|. -++++|.+|+.+|..|+|++|+|+||
T Consensus 93 ~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd 172 (248)
T cd04252 93 PITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE 172 (248)
T ss_pred cccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence 98864221 12456789999999999999999981 121 24679999999999999999999999
Q ss_pred cccccccCCcCCcCcccccccCHH-HH---Hh----hhcCcccHHHHHHHHhC---CCcEEEEecCCchhHHHHhcC-CC
Q psy3752 749 VDGIYNSDPNKCLSAIIYKKITFD-EV---IS----KKLEIMDSTAFSFCRDQ---KLPIRVFSIIKSGALKRVIEG-KN 816 (1012)
Q Consensus 749 VdGVy~~dP~~~~~a~~i~~i~~~-e~---~~----~G~~v~~~~aa~~a~~~---gi~v~I~~g~~~~~i~~~l~G-e~ 816 (1012)
|+|||+++ .++|++++.. +. .+ +|+|..|+.++..+.+. ...++|++ ++.+...|.+ +.
T Consensus 173 v~GV~~~~------g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g 243 (248)
T cd04252 173 TGGLLDGT------GKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSG 243 (248)
T ss_pred CcccCCCC------CCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCC
Confidence 99999752 5678888753 32 22 69999999988888776 34577776 4667665544 45
Q ss_pred cceEE
Q psy3752 817 EGTLV 821 (1012)
Q Consensus 817 ~GT~I 821 (1012)
.||.|
T Consensus 244 ~GT~i 248 (248)
T cd04252 244 AGTLI 248 (248)
T ss_pred CCccC
Confidence 89975
No 114
>KOG0867|consensus
Probab=99.79 E-value=4.4e-19 Score=188.85 Aligned_cols=170 Identities=23% Similarity=0.347 Sum_probs=136.0
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC-CCC-CCCCCHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP-YPQ-LMSSDPLMRARARLMLLNFEK 75 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p-~~~-L~p~~~~era~v~~~~~~~~~ 75 (1012)
++||.+.|++.. .+|+|+++||.|+||+|+|+|..++||.||+.||+++|. ... |+|.++.+|+.+++|+.+...
T Consensus 26 l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~~~l~p~~~~~ra~v~~~l~~~~~ 105 (226)
T KOG0867|consen 26 LEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLGGILLPKDLKERAIVDQWLEFENG 105 (226)
T ss_pred CceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCCcccCCcCHHHHHHHHHHHHhhhc
Confidence 578899888765 779999999999999999999999999999999999996 333 999999999999999755554
Q ss_pred HHHHHHH-H---hh-hccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhh--hhccccccC
Q psy3752 76 EIFIHLY-M---LE-NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRL--DYYGINLSK 148 (1012)
Q Consensus 76 ~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l--~~~~~~l~~ 148 (1012)
.+..... . .+ .................+.+.++.+|.+|.++.|++|+++|+||+.+.+.+..+ .........
T Consensus 106 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~tlADl~~~~~~~~~~~~~~~~~~~~ 185 (226)
T KOG0867|consen 106 VLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQLTLADLSLASTLSQFQGKFATEKDFE 185 (226)
T ss_pred ccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcccHHHHHHhhHHHHHhHhhhhhhhhh
Confidence 4433321 0 11 122222444456777889999999999999999999999999999999998876 333233456
Q ss_pred CCchhHHHHHHHhcCCcccccc
Q psy3752 149 SASPLIKYAERIFSRPSYMESL 170 (1012)
Q Consensus 149 ~~P~L~aw~~ri~~rp~~~~~l 170 (1012)
+||++.+|++++.++|++.+..
T Consensus 186 ~~p~v~~W~~~~~~~P~~~e~~ 207 (226)
T KOG0867|consen 186 KYPKVARWYERIQKRPAYEEAN 207 (226)
T ss_pred hChHHHHHHHHHHhCccHHHHH
Confidence 7999999999999999987644
No 115
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.79 E-value=2.6e-18 Score=178.20 Aligned_cols=219 Identities=23% Similarity=0.279 Sum_probs=167.4
Q ss_pred hhhhhhcCCC---CcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhccc--ccCCCcchHHHHHHHHHHHH
Q psy3752 599 LGEALMKGDA---YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNK--IQNIDRSTADYMGMLATIIN 669 (1012)
Q Consensus 599 ~g~~~~~~~~---~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 669 (1012)
+|.++...+. .....+.++..+++|+.+.+.|+++||.||.| ..+++.... ..+.++.++|.++++++++.
T Consensus 8 GGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~AmsQG~I 87 (312)
T COG0549 8 GGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLVAMSQGMI 87 (312)
T ss_pred cchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHhHhhhhHH
Confidence 5666665433 33446778899999999999999999999986 444433321 23567789999999999999
Q ss_pred HHHHHHH----HHhcCCc---eeEeeh-----hch-------------------------------------------hh
Q psy3752 670 SLALFDI----LNKSGII---SHVMSA-----ISI-------------------------------------------EK 694 (1012)
Q Consensus 670 ~~~l~~~----l~~~gi~---a~~l~~-----~~~-------------------------------------------~~ 694 (1012)
+++|+.+ |...|+. +..++- .|- ..
T Consensus 88 Gy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~RRVVpSP~ 167 (312)
T COG0549 88 GYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYRRVVPSPK 167 (312)
T ss_pred HHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCeeEecCCCC
Confidence 9998887 4555653 111211 110 00
Q ss_pred hhhhcchHHHHHHhhCCCEEEEcCcCCCCCC-------------ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCc
Q psy3752 695 FLESYIPLNAIKYLEEGKVVIFAGGIGNPFF-------------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL 761 (1012)
Q Consensus 695 ~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~-------------s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~ 761 (1012)
..+.+..+.+..++++|.++|.+|+.|.|.+ ..|..|+.||..++||.|+|+||||+||-...+ |
T Consensus 168 P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p 245 (312)
T COG0549 168 PVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--P 245 (312)
T ss_pred CccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--c
Confidence 1334467789999999999999998887642 279999999999999999999999999999987 7
Q ss_pred CcccccccCHHHHHh--------hhcCcccHHH-HHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 762 SAIIYKKITFDEVIS--------KKLEIMDSTA-FSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 762 ~a~~i~~i~~~e~~~--------~G~~v~~~~a-a~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
+.+.+++++.+|+.+ -|+|.+|+.| +.++...|-+.+|.+ .+++.++|.|+ .||.|.+
T Consensus 246 ~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 246 NQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred cchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 888999999999654 5899999985 477788788888876 45688999998 5999864
No 116
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.79 E-value=2.1e-18 Score=202.51 Aligned_cols=217 Identities=18% Similarity=0.162 Sum_probs=162.8
Q ss_pred HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccc---cc----C---CCcchHH
Q psy3752 590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ----N---IDRSTAD 659 (1012)
Q Consensus 590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~---~~----~---~~~~~~~ 659 (1012)
+++|+|+ +|+++. ...+++++.+|+.+...|.++|||||||......... .. | .+..+++
T Consensus 26 ~~~VIk~--GG~~l~--------~~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~ 95 (441)
T PRK05279 26 KTFVIML--GGEAIA--------HGNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALE 95 (441)
T ss_pred CEEEEEE--Cchhcc--------ChhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHH
Confidence 3577885 444332 1236789999999999999999999999554433222 11 2 2455666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeEeehhch-----h------------------hhhhhcchHHHHHHhhCCCEEEE
Q psy3752 660 YMGMLATIINSLALFDILNKSGIISHVMSAISI-----E------------------KFLESYIPLNAIKYLEEGKVVIF 716 (1012)
Q Consensus 660 ~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~-----~------------------~~~~~~~~~~l~~~L~~g~VPVi 716 (1012)
...++ .+..+..+++.|+. |++++++++.++ . ..+..++.+.+..+|++|+|||+
T Consensus 96 ~~~~~-~g~v~~~l~~~l~~-g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~ 173 (441)
T PRK05279 96 CVKQA-AGELRLDIEARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLL 173 (441)
T ss_pred HHHHH-HHHHHHHHHHHHhc-cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEE
Confidence 66666 46778888888855 888877544321 0 11345678999999999999999
Q ss_pred cCc----CCC-CCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh----------hhcCc
Q psy3752 717 AGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEI 781 (1012)
Q Consensus 717 ~G~----~g~-~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~----------~G~~v 781 (1012)
++. .|. -++++|++|+.||..|+|++|+|+|||||||++ ++++|++++..++.+ +|+|.
T Consensus 174 ~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~ 247 (441)
T PRK05279 174 SPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA 247 (441)
T ss_pred CCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence 762 121 246799999999999999999999999999953 367888888755532 59999
Q ss_pred ccHHHHHHHHhCCC-cEEEEecCCchhHHHHhcCC-CcceEEEEe
Q psy3752 782 MDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGK-NEGTLVYEI 824 (1012)
Q Consensus 782 ~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge-~~GT~I~~~ 824 (1012)
.|+.++..+.+.|+ +++|+++..|+++...|.++ ..||.|++.
T Consensus 248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME 292 (441)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence 99999888888899 89999999999999988765 479999975
No 117
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.79 E-value=1.4e-18 Score=213.90 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=127.9
Q ss_pred HHHHHHHH--HHHHHHHHHHhcCCceeEeehhchhh--------hhhhcchHHHHHHhhC--CCEEEEcCcCCCCC---C
Q psy3752 661 MGMLATII--NSLALFDILNKSGIISHVMSAISIEK--------FLESYIPLNAIKYLEE--GKVVIFAGGIGNPF---F 725 (1012)
Q Consensus 661 ~~~~~~~~--~~~~l~~~l~~~gi~a~~l~~~~~~~--------~~~~~~~~~l~~~L~~--g~VPVi~G~~g~~~---~ 725 (1012)
..+++.|+ ++.+|+.+|+..|+++..+++.++-. +........+.+.+.. +.|||++||+|... .
T Consensus 123 d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ 202 (810)
T PRK09466 123 AEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGET 202 (810)
T ss_pred hheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCE
Confidence 44445554 68889999999999999999877511 1112234567777654 38999999987421 2
Q ss_pred c------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752 726 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 796 (1012)
Q Consensus 726 s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~ 796 (1012)
+ +|++|+.+|..|+|+.+.|||||||||++||+..|+|++|++++|+|+.+ .|.+++|+.+.++|.+++||
T Consensus 203 ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ip 282 (810)
T PRK09466 203 VLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDID 282 (810)
T ss_pred EEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCe
Confidence 2 89999999999999999999999999999999999999999999999988 79999999999999999999
Q ss_pred EEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 797 IRVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 797 v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
++|.|.++| +..||+|..
T Consensus 283 i~V~ntf~p---------~~~GT~I~~ 300 (810)
T PRK09466 283 LQLRCSYQP---------EQGSTRIER 300 (810)
T ss_pred EEEecCCCC---------CCCceEEec
Confidence 999999987 346999975
No 118
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.78 E-value=2.3e-18 Score=185.37 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=149.4
Q ss_pred ccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehh
Q psy3752 611 INSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI 690 (1012)
Q Consensus 611 id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~ 690 (1012)
.+++.+..+++.|+.|...|.++|||||||........ . .......++.. ..+..|+..|+.+|++++++++.
T Consensus 48 ~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~-~-----~~~~~~~~v~~-~~n~~Lv~~L~~~G~~A~gl~g~ 120 (271)
T cd04236 48 RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS-D-----LELQAARSRLV-KDCKTLVEALQANSAAAHPLFSG 120 (271)
T ss_pred cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc-C-----CcchheehhHH-HHHHHHHHHHHhCCCCeeeecCc
Confidence 35678899999999999999999999999965543333 1 11111222333 45677888999999999999886
Q ss_pred ch------------hhhhhhcchHHHHHHhhCCCEEEEcCc----CC-CCCCccHHHHHHHHHhcCCceEEeeecccccc
Q psy3752 691 SI------------EKFLESYIPLNAIKYLEEGKVVIFAGG----IG-NPFFTTDTTAALRAAEIKAEIILKATKVDGIY 753 (1012)
Q Consensus 691 ~~------------~~~~~~~~~~~l~~~L~~g~VPVi~G~----~g-~~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy 753 (1012)
.. ...++.++.+.+..+|++|.|||+++. .| .-++++|++|+.+|.+|+|++|+++|||+|||
T Consensus 121 ~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~ 200 (271)
T cd04236 121 ESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLR 200 (271)
T ss_pred cceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceE
Confidence 31 011456899999999999999999981 11 12466999999999999999999999999999
Q ss_pred ccCCcCCcCcccccccCH-HHHHh-------hhcC---cccHHHHHHHHhCCCcEEEEecCCchhHH-HHhcCCCcceEE
Q psy3752 754 NSDPNKCLSAIIYKKITF-DEVIS-------KKLE---IMDSTAFSFCRDQKLPIRVFSIIKSGALK-RVIEGKNEGTLV 821 (1012)
Q Consensus 754 ~~dP~~~~~a~~i~~i~~-~e~~~-------~G~~---v~~~~aa~~a~~~gi~v~I~~g~~~~~i~-~~l~Ge~~GT~I 821 (1012)
+.+ .++|++++. +|+.+ .||| ++++.++.-+...|+.|+|++ |+.+. .++..++.||+|
T Consensus 201 ~~~------g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 201 DQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred CCC------CCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence 742 567888884 55543 6889 888889989999999999987 55544 566667789975
No 119
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.78 E-value=4.8e-18 Score=198.49 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=153.4
Q ss_pred hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcc---ccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy3752 616 IKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 685 (1012)
Q Consensus 616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~---~~~----~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~ 685 (1012)
+..++++|+.|...|.++|||||||.....+.. ... | .++.+++...++ ++..+..|++.|... ++++
T Consensus 34 ~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~-~g~vn~~l~~~l~~~-~~~~ 111 (429)
T TIGR01890 34 LGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLEQAQQA-AGTLRLAIEARLSMS-LSNT 111 (429)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHH-hChHHHHHHHHHHhc-CCcc
Confidence 458999999999999999999999954443322 221 2 266777888775 777788888888776 4433
Q ss_pred E-----eehhchh----------------h--hhhhcchHHHHHHhhCCCEEEEcC-cC---C-CCCCccHHHHHHHHHh
Q psy3752 686 V-----MSAISIE----------------K--FLESYIPLNAIKYLEEGKVVIFAG-GI---G-NPFFTTDTTAALRAAE 737 (1012)
Q Consensus 686 ~-----l~~~~~~----------------~--~~~~~~~~~l~~~L~~g~VPVi~G-~~---g-~~~~s~D~~Aa~lA~~ 737 (1012)
+ +++.+.+ . .+..++.+.+..+|++|+|||+++ +. | .-++++|++|+.||.+
T Consensus 112 ~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~a 191 (429)
T TIGR01890 112 PMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAIS 191 (429)
T ss_pred cccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHH
Confidence 3 3443321 1 145678999999999999999987 21 2 2357799999999999
Q ss_pred cCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh------hhcCcccHHHHHHHHhCCC-cEEEEecCCchhHHH
Q psy3752 738 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKR 810 (1012)
Q Consensus 738 l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~ 810 (1012)
|+|++|+++|||+|||++ +.++|++++.+++.+ .|+|..++.++..|.+.|+ +++|++|..|+++..
T Consensus 192 l~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~ 265 (429)
T TIGR01890 192 LKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQ 265 (429)
T ss_pred cCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHH
Confidence 999999999999999964 256888888766544 3445899999999999996 799999999999888
Q ss_pred Hh-cCCCcceEEEEe
Q psy3752 811 VI-EGKNEGTLVYEI 824 (1012)
Q Consensus 811 ~l-~Ge~~GT~I~~~ 824 (1012)
.| ..+..||+|...
T Consensus 266 el~~~~g~GT~i~~d 280 (429)
T TIGR01890 266 ELFTRDGIGTSISKE 280 (429)
T ss_pred HHhcCCCCcceEecc
Confidence 76 456689999875
No 120
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.75 E-value=2.7e-18 Score=215.94 Aligned_cols=217 Identities=20% Similarity=0.227 Sum_probs=157.5
Q ss_pred HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc--c--hHhhhhcccc---------------
Q psy3752 590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG--G--NICRGISNKI--------------- 650 (1012)
Q Consensus 590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG--G--~~~~~~~~~~--------------- 650 (1012)
.++|.|+ +|+++ -+.+.++++++.|..-.+.|.++++|+|+ | +.+.......
T Consensus 8 ~~~V~KF--GGtSv-------~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~ 78 (861)
T PRK08961 8 RWVVLKF--GGTSV-------SRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSASRVAAIRQR 78 (861)
T ss_pred CcEEEEE--Ccccc-------CCHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3457786 55543 46677999999888766678899999997 4 2221111000
Q ss_pred -----c--CCCc------------------------chHHHHHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhhh-
Q psy3752 651 -----Q--NIDR------------------------STADYMGMLATI--INSLALFDILNKSGIISHVMSAISIEKFL- 696 (1012)
Q Consensus 651 -----~--~~~~------------------------~~~~~~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~~- 696 (1012)
. ..+. .+.....+++.| +++.+|+.+|++.|+++..+++.++....
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~ 158 (861)
T PRK08961 79 HRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALP 158 (861)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecC
Confidence 0 0000 111122333444 36888999999999999999987652110
Q ss_pred ----------------hhcchHHHHHHhhCC-CEEEEcCcCCCC--C-Cc------cHHHHHHHHHhcCCceEEeeeccc
Q psy3752 697 ----------------ESYIPLNAIKYLEEG-KVVIFAGGIGNP--F-FT------TDTTAALRAAEIKAEIILKATKVD 750 (1012)
Q Consensus 697 ----------------~~~~~~~l~~~L~~g-~VPVi~G~~g~~--~-~s------~D~~Aa~lA~~l~Ad~liilTDVd 750 (1012)
...+...+..++..+ .|||++||+|.. + .+ +|++|+.+|..++||.++++||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~ 238 (861)
T PRK08961 159 QPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVP 238 (861)
T ss_pred ccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 011223444555555 599999998742 2 11 999999999999999999999999
Q ss_pred cccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752 751 GIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 824 (1012)
Q Consensus 751 GVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 824 (1012)
||||+||+.+|+|++|++++++|+.+ .|++++|+.|+++|.++|||++|.|+++| +..||+|.+.
T Consensus 239 Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~---------~~~gT~I~~~ 306 (861)
T PRK08961 239 GMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERP---------DLSGTSIDGD 306 (861)
T ss_pred ccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCC---------CCCccEEeCC
Confidence 99999999999999999999999876 79999999999999999999999999887 3458888643
No 121
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.75 E-value=1.1e-17 Score=176.33 Aligned_cols=160 Identities=19% Similarity=0.300 Sum_probs=113.8
Q ss_pred CceEEEEecCCCCCchhh--------hcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIF--------RMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLN 72 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~--------~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~ 72 (1012)
+||+.+.++. .. ++|. +.||+|+||+|++||.+|+||.||++||+++|| +.+.+..+++.++.++..
T Consensus 28 i~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~~---~~~~~~~~~~~~~~~~~~ 102 (205)
T PTZ00057 28 IEYTDKRFGE-NG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKYK---ICGESELNEFYADMIFCG 102 (205)
T ss_pred CCeEEEeccc-cc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHH
Confidence 5788887743 22 2333 489999999999999999999999999999997 456666655555544332
Q ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCC--CcccCCCcCHHHHHHHHHhhhhhh-ccccccCC
Q psy3752 73 FEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN--KYMLGDEFSMLDVVIAPLLWRLDY-YGINLSKS 149 (1012)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~--~fL~Gd~~TlADi~l~~~L~~l~~-~~~~l~~~ 149 (1012)
+. .+.......... .....+.....+.+.|..||++|+++ +||+|+++|+||+++++.+.++.. .+.++ +.
T Consensus 103 ~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~~~~~~~l-~~ 176 (205)
T PTZ00057 103 VQ-DIHYKFNNTNLF----KQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYDDIETKYPNSL-KN 176 (205)
T ss_pred HH-HHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHHHHHHHhChhhh-cc
Confidence 22 221111110000 01111334567889999999999753 899999999999999999887653 33333 56
Q ss_pred CchhHHHHHHHhcCCccccccc
Q psy3752 150 ASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 150 ~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
||+|.+|++|+.+||+|++.+.
T Consensus 177 ~P~l~~~~~r~~~~P~~k~y~~ 198 (205)
T PTZ00057 177 FPLLKAHNEFISNLPNIKNYIS 198 (205)
T ss_pred ChhHHHHHHHHHhChHHHHHHH
Confidence 9999999999999999998765
No 122
>PRK09181 aspartate kinase; Validated
Probab=99.73 E-value=1.6e-16 Score=185.10 Aligned_cols=159 Identities=12% Similarity=0.137 Sum_probs=125.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhh----CCCEEEEcCcCCCCC--Cc--
Q psy3752 655 RSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT-- 726 (1012)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~----~g~VPVi~G~~g~~~--~s-- 726 (1012)
+...|.....+...++.+|+.+|+..|+++..++...............+...+. .+.|||++||.|.+. .+
T Consensus 136 ~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTL 215 (475)
T PRK09181 136 LTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTF 215 (475)
T ss_pred hhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEec
Confidence 3344444444444478889999999999999865432211111112456666665 478999999876432 22
Q ss_pred ----cHHHHHHHHHhcCCceEEeeeccccccccCCcCC--cCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcE
Q psy3752 727 ----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI 797 (1012)
Q Consensus 727 ----~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~--~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v 797 (1012)
+|++|+.+|.+|+||.+.|||||+ ||++||+.. |+|+.|++++|+|+.+ .|.+++++.++++|.+++||+
T Consensus 216 GRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi 294 (475)
T PRK09181 216 DRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPL 294 (475)
T ss_pred CCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeE
Confidence 899999999999999999999997 999999999 6999999999999988 799999999999999999999
Q ss_pred EEEecCCchhHHHHhcCCCcceEEEE
Q psy3752 798 RVFSIIKSGALKRVIEGKNEGTLVYE 823 (1012)
Q Consensus 798 ~I~~g~~~~~i~~~l~Ge~~GT~I~~ 823 (1012)
+|.|.++| +..||+|++
T Consensus 295 ~V~nt~~p---------~~~GT~I~~ 311 (475)
T PRK09181 295 RIKNTFEP---------EHPGTLITK 311 (475)
T ss_pred EEecCCCC---------CCCCeEEec
Confidence 99999887 357999974
No 123
>PRK10387 glutaredoxin 2; Provisional
Probab=99.71 E-value=8e-17 Score=170.53 Aligned_cols=160 Identities=21% Similarity=0.171 Sum_probs=113.6
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEE-EeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFI 79 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL-~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~ 79 (1012)
|||+.+.++...... ..+.||.|+||+| .+||.+|+||.||++||+++||++.+.+ .+++.+++|+.+....+..
T Consensus 24 i~y~~~~~~~~~~~~-~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~ 99 (210)
T PRK10387 24 IPVELIVLANDDEAT-PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLTG---KRSPAIEEWLRKVFGYLNK 99 (210)
T ss_pred CCeEEEEcCCCchhh-HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCCC---cccHHHHHHHHHHHHHhhc
Confidence 689998887554222 2678999999999 5889999999999999999998654532 2466777776555433322
Q ss_pred HHHHhhh----cc--ccccH------------------HHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHH
Q psy3752 80 HLYMLEN----ER--NKTSI------------------KGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL 135 (1012)
Q Consensus 80 ~~~~~~~----~~--~~~~~------------------~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~ 135 (1012)
.+..... +. ..... ...+.....+.+.|+.+|.+|++ +||+|+++|+||++++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~l~G~~~s~ADi~l~~~ 178 (210)
T PRK10387 100 LLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLIVK-PNAVNGELSTDDIHLFPI 178 (210)
T ss_pred chhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHhcC-ccccCCCCCHHHHHHHHH
Confidence 2111000 00 00000 00134567788999999999986 999999999999999999
Q ss_pred hhhhhhccccccCCCchhHHHHHHHhcCCccc
Q psy3752 136 LWRLDYYGINLSKSASPLIKYAERIFSRPSYM 167 (1012)
Q Consensus 136 L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~ 167 (1012)
+.|+...+. . +.+|+|.+|++||.+||++.
T Consensus 179 l~~~~~~~~-~-~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 179 LRNLTLVKG-I-EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HhcceeecC-C-CCCHHHHHHHHHHHHHhCCC
Confidence 999875422 1 23699999999999999874
No 124
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.70 E-value=1.4e-16 Score=171.95 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=123.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhh----CCCEEEEcCcCCCCC--Cc-
Q psy3752 654 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT- 726 (1012)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~----~g~VPVi~G~~g~~~--~s- 726 (1012)
.+...|.....+...++.+++.+|++.|+++..++...............+...+. .+.|||++||.|+.. .+
T Consensus 129 ~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itT 208 (304)
T cd04248 129 LLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMRE 208 (304)
T ss_pred CHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEE
Confidence 34455555555555578889999999999998854432211000112344444443 578999999865321 22
Q ss_pred -----cHHHHHHHHHhcCCceEEeeeccccccccCCcCC--cCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752 727 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 796 (1012)
Q Consensus 727 -----~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~--~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~ 796 (1012)
+|++|+.+|.+++|+.+.|||||+ ||++||+.+ ++|+.|++++|+|+.+ .|++++++.|+++|.+++||
T Consensus 209 LGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IP 287 (304)
T cd04248 209 FDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP 287 (304)
T ss_pred cCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCe
Confidence 999999999999999999999996 999999999 6899999999999987 79999999999999999999
Q ss_pred EEEEecCCchhHHHHhcCCCcceEEE
Q psy3752 797 IRVFSIIKSGALKRVIEGKNEGTLVY 822 (1012)
Q Consensus 797 v~I~~g~~~~~i~~~l~Ge~~GT~I~ 822 (1012)
++|.|.++| +..||+|+
T Consensus 288 i~Vkntf~P---------~~~GTlIt 304 (304)
T cd04248 288 LRVKNTFEP---------DHPGTLIT 304 (304)
T ss_pred EEEecCCCC---------CCCCceeC
Confidence 999999987 35799984
No 125
>KOG1695|consensus
Probab=99.68 E-value=3.1e-16 Score=161.27 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=126.3
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~ 80 (1012)
++||.+++...+..+..+...|+|++|+|..||..|.+|.||+|||+++|+ |.+.++.+.++++++...+.+.....
T Consensus 27 v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g---l~Gkt~~E~a~vD~i~d~~~D~~~~~ 103 (206)
T KOG1695|consen 27 VSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG---LAGKTEEEEAWVDMIVDQFKDFRWEI 103 (206)
T ss_pred CCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---cCCCCHHHHHHHHHHHHhhhhHHHHH
Confidence 578888887665323345568999999999999999999999999999997 99999999999999877666544331
Q ss_pred HHHhhh-ccccccHHHHH-HHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHHHHhhhhhh-ccccccCCCchhHH
Q psy3752 81 LYMLEN-ERNKTSIKGYK-RAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWRLDY-YGINLSKSASPLIK 155 (1012)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~-~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~~~L~~l~~-~~~~l~~~~P~L~a 155 (1012)
...... ..........+ .......+.+..+++.|. ++.||+||++|+||+.++..+..+.. ......+.+|+|.+
T Consensus 104 ~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~l~~l~~~~~~~~~~~~P~L~a 183 (206)
T KOG1695|consen 104 FRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIAEHLDTLEELLDPSALDHFPKLKA 183 (206)
T ss_pred HHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHHHHHHHHhcCchhhccChHHHH
Confidence 111111 11111111111 344556678888888887 55799999999999999999988776 45555667899999
Q ss_pred HHHHHhcCCccccccc
Q psy3752 156 YAERIFSRPSYMESLT 171 (1012)
Q Consensus 156 w~~ri~~rp~~~~~lt 171 (1012)
|.+++.++|.+++.+.
T Consensus 184 ~~~kv~~~p~ik~~i~ 199 (206)
T KOG1695|consen 184 FKERVSSIPNIKKYLE 199 (206)
T ss_pred HHHHHhcCchHHHHHh
Confidence 9999999999876554
No 126
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.65 E-value=1.1e-15 Score=174.02 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=128.9
Q ss_pred hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc---c----C---CCcchHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy3752 616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 685 (1012)
Q Consensus 616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~---~----~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~ 685 (1012)
+..++++|+.|...|.++|||||||.......... . + .++.+++...++.. ..+.-|+..
T Consensus 52 ~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~-~vn~~lv~~--------- 121 (398)
T PRK04531 52 LEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQ-RSNLDLVEA--------- 121 (398)
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHH-HHHHHHHHH---------
Confidence 58899999999999999999999995554333321 1 2 25555555555443 223323222
Q ss_pred EeehhchhhhhhhcchHHHHHHhhCCCEEEEcCc----CCCC-CCccHHHHHHHHHhcCCceEEeeeccccccccCCcCC
Q psy3752 686 VMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC 760 (1012)
Q Consensus 686 ~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~----~g~~-~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~ 760 (1012)
+..+|+.|.|||+++. .|.. ++++|.+|+.+|.+|+|++|+++|||+|||+.+
T Consensus 122 ------------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~---- 179 (398)
T PRK04531 122 ------------------VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDAD---- 179 (398)
T ss_pred ------------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCC----
Confidence 6778999999999762 1221 467999999999999999999999999999753
Q ss_pred cCcccccccCH-HHHH---h----hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCC-CcceEEEEee
Q psy3752 761 LSAIIYKKITF-DEVI---S----KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLVYEIY 825 (1012)
Q Consensus 761 ~~a~~i~~i~~-~e~~---~----~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge-~~GT~I~~~~ 825 (1012)
+++|+.++. ++.. + +|+|..++.++..|.+....++++++..|+++...|.++ ..||+|...+
T Consensus 180 --g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~ 251 (398)
T PRK04531 180 --GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRGE 251 (398)
T ss_pred --CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecCC
Confidence 567777775 2322 2 689999999988887654567777788899998877654 5799999763
No 127
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.64 E-value=1.8e-15 Score=159.96 Aligned_cols=159 Identities=21% Similarity=0.150 Sum_probs=109.7
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFI 79 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~ 79 (1012)
++|+.+.++.... ....++||.|+||+|+ +||.+++||.+|++||+++||.+.+.|. .++++++|+..+...+..
T Consensus 23 l~~e~~~~~~~~~-~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 98 (209)
T TIGR02182 23 IPVEKHVLLNDDE-ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTGK---VSPEIEAWLRKVTGYANK 98 (209)
T ss_pred CCeEEEECCCCcc-hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCCC---ChHHHHHHHHHHHHHhhh
Confidence 5888877754432 2357899999999998 8999999999999999999986444332 345566665444333211
Q ss_pred HHHHhhhc-c-c-------------cc--c---H----HHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHH
Q psy3752 80 HLYMLENE-R-N-------------KT--S---I----KGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL 135 (1012)
Q Consensus 80 ~~~~~~~~-~-~-------------~~--~---~----~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~ 135 (1012)
.+...... . . .. . . ...+.....+.+.|+.+|++|++++|++| ++|+||+++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g-~~TiADi~l~~~ 177 (209)
T TIGR02182 99 LLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKLIDGPNAVNG-ELSEDDILVFPL 177 (209)
T ss_pred hhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHHHhCccccCC-CCCHHHHHHHHH
Confidence 11100000 0 0 00 0 0 00034556788899999999999999965 699999999999
Q ss_pred hhhhhhccccccCCCc-hhHHHHHHHhcCCccc
Q psy3752 136 LWRLDYYGINLSKSAS-PLIKYAERIFSRPSYM 167 (1012)
Q Consensus 136 L~~l~~~~~~l~~~~P-~L~aw~~ri~~rp~~~ 167 (1012)
+.|+...+. . .+| +|.+|++||++|+++.
T Consensus 178 l~~~~~~~~-~--~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 178 LRNLTLVAG-I--NWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred hcCeeeecC-C--CCChHHHHHHHHHHHHhCCC
Confidence 998876431 1 256 9999999999998763
No 128
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.63 E-value=8.1e-15 Score=141.84 Aligned_cols=173 Identities=20% Similarity=0.207 Sum_probs=134.9
Q ss_pred CCeEEEEEccchHhh--hhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHH
Q psy3752 630 GIELAIVIGGGNICR--GISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKY 707 (1012)
Q Consensus 630 G~~vvIVhGGG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~ 707 (1012)
+.+++||.|||.++. .......+++....+|+.+.++.+.+.++++.........+. .+ +..
T Consensus 26 ~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv~-ep---------------~~~ 89 (212)
T COG2054 26 QRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTVT-EP---------------EDG 89 (212)
T ss_pred cceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhcccccceee-ch---------------hhc
Confidence 347999999995543 344455688999999999999999999988876555422211 11 112
Q ss_pred hhCCCEEEEcCc------C---CCCCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHhhh
Q psy3752 708 LEEGKVVIFAGG------I---GNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 778 (1012)
Q Consensus 708 L~~g~VPVi~G~------~---g~~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~~G 778 (1012)
...+..||+-+. . ..-.+|+|++|.++|.+++|..+++.|||||||+.+|. ++++++|+..++.. |
T Consensus 90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~-~ 164 (212)
T COG2054 90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT-G 164 (212)
T ss_pred cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc-C
Confidence 344555565330 0 01136699999999999999999999999999998864 59999999998866 7
Q ss_pred cCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCC-cceEEEE
Q psy3752 779 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKN-EGTLVYE 823 (1012)
Q Consensus 779 ~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~-~GT~I~~ 823 (1012)
-...|+..-.++.++++.++++||..|+++.+++.|+. +||+|.+
T Consensus 165 ~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 165 ETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred cccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence 78889999999999999999999999999999999965 6999976
No 129
>KOG0456|consensus
Probab=99.61 E-value=4.7e-15 Score=158.25 Aligned_cols=235 Identities=18% Similarity=0.263 Sum_probs=178.1
Q ss_pred CcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEee
Q psy3752 609 YNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMS 688 (1012)
Q Consensus 609 ~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~ 688 (1012)
..+++..+..+.+.+.++... ......++..+.|+...++..++...++++|+..|..+....
T Consensus 160 ~~~d~~v~~~~le~leq~Lk~-----------------i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D 222 (559)
T KOG0456|consen 160 LIVDPAVIAKLLEGLEQLLKG-----------------IAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYD 222 (559)
T ss_pred hccCHHHHHHHHHHHHHHHHH-----------------HHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeec
Confidence 445666666676666665431 122234567788888888888899999999999999998877
Q ss_pred hhchhhh----------hhhcchHHHHHH----hhCCCEEEEcCcCCCCC----Cc------cHHHHHHHHHhcCCceEE
Q psy3752 689 AISIEKF----------LESYIPLNAIKY----LEEGKVVIFAGGIGNPF----FT------TDTTAALRAAEIKAEIIL 744 (1012)
Q Consensus 689 ~~~~~~~----------~~~~~~~~l~~~----L~~g~VPVi~G~~g~~~----~s------~D~~Aa~lA~~l~Ad~li 744 (1012)
.+.+... ...+-+.....+ ...+.|||+.||.|... ++ +|..|+.+|.+||+|.+-
T Consensus 223 ~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQ 302 (559)
T KOG0456|consen 223 AFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQ 302 (559)
T ss_pred hhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhh
Confidence 7665322 111122222222 13478999999877321 22 899999999999999999
Q ss_pred eeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEE
Q psy3752 745 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821 (1012)
Q Consensus 745 ilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I 821 (1012)
+|.|||||+|+||++.|.|++++.++++|+.+ .|..+.++...+.+.+..||+.|.|..+| ...||.|
T Consensus 303 VWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP---------~~~GTvI 373 (559)
T KOG0456|consen 303 VWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNP---------TAPGTVI 373 (559)
T ss_pred hhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCC---------CCCceEe
Confidence 99999999999999999999999999999987 89999999999999999999999999888 4579999
Q ss_pred EEeeehh---------hhh--hhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEE
Q psy3752 822 YEIYIMI---------ISD--IKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQV 869 (1012)
Q Consensus 822 ~~~~~~~---------~~~--i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V 869 (1012)
+|...|. -++ +++-...+|-....+|.+-|+-+---..+.+++-.-.|
T Consensus 374 ~~d~~m~k~~~TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvvaTSEV 432 (559)
T KOG0456|consen 374 TPDRDMSKAGLTSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVATSEV 432 (559)
T ss_pred ccchhhhhccceEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEEeeeE
Confidence 9873321 122 24566788999999988888877666666666655444
No 130
>PLN02907 glutamate-tRNA ligase
Probab=99.56 E-value=1.8e-14 Score=174.92 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=103.5
Q ss_pred cCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHH
Q psy3752 20 MNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKR 98 (1012)
Q Consensus 20 inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1012)
.+|.|+||+|+ +||.+|+||.||++||++.||+..|+|.++.+++++++|+.+..... .
T Consensus 32 ~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~d~~erAqV~qWL~~~~~~~---------~----------- 91 (722)
T PLN02907 32 SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFESSQVDEWLDYAPTFS---------S----------- 91 (722)
T ss_pred cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHHhhcc---------c-----------
Confidence 47999999999 58899999999999999999988899999999999999976543210 0
Q ss_pred HHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhh--hhccccccCCCchhHHHHHHHhcCCc
Q psy3752 99 AREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRL--DYYGINLSKSASPLIKYAERIFSRPS 165 (1012)
Q Consensus 99 ~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l--~~~~~~l~~~~P~L~aw~~ri~~rp~ 165 (1012)
...+...|+.||++|++++||+|+++|+||+++++.+.+. .+........||+|.+|+++|.++|+
T Consensus 92 -~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 92 -GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred -HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence 0134567899999999999999999999999999988654 22233334679999999999999999
No 131
>KOG4420|consensus
Probab=99.56 E-value=1.7e-14 Score=146.65 Aligned_cols=171 Identities=28% Similarity=0.405 Sum_probs=118.7
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC-CCCCCC-CHHHHHHHHH-----HH
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY-PQLMSS-DPLMRARARL-----ML 70 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~-~~L~p~-~~~era~v~~-----~~ 70 (1012)
|+|+...|++.. .++||..+||.|.||||.+|+.+|+|+.-|++|++++|.+ ..|.|. +..+..++.. |.
T Consensus 50 id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger~l~pe~~S~~~d~~l~~e~~l~~ 129 (325)
T KOG4420|consen 50 IDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGERVLMPEVGSLQHDRVLQYEELLDA 129 (325)
T ss_pred cccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccccccccccccccHHHHHHHHHHHh
Confidence 567777888765 6799999999999999999999999999999999999965 447773 2211112111 10
Q ss_pred ---HHHHH------HH------------HHHH-------HHhhhcccc--------------------ccHHHHHHHHHH
Q psy3752 71 ---LNFEK------EI------------FIHL-------YMLENERNK--------------------TSIKGYKRAREE 102 (1012)
Q Consensus 71 ---~~~~~------~~------------~~~~-------~~~~~~~~~--------------------~~~~~~~~~~~~ 102 (1012)
..+.. .+ ..+. ........+ .+...+......
T Consensus 130 lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~akqkkl~~kl~~hdd~s~lkkild~ 209 (325)
T KOG4420|consen 130 LPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAKQKKLMAKLLEHDDVSYLKKILDE 209 (325)
T ss_pred cCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 00000 00 0000 000000000 111223444566
Q ss_pred HHHHHHHHHhcccC----CCcccCCCcCHHHHHHHHHhhhhhhcccc---c-cCCCchhHHHHHHHhcCCccccccc
Q psy3752 103 IRDRLITLAPLFLK----NKYMLGDEFSMLDVVIAPLLWRLDYYGIN---L-SKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 103 l~~~L~~Le~~L~~----~~fL~Gd~~TlADi~l~~~L~~l~~~~~~---l-~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
+...|+.+|.-|.+ .+||||+.||+||+++.+.|+++...|++ | ....|+|..|++|++.|++|.+.+.
T Consensus 210 l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gsrpnle~Yf~rvrrR~sf~kvlg 286 (325)
T KOG4420|consen 210 LAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGSRPNLESYFERVRRRFSFRKVLG 286 (325)
T ss_pred HHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCCCccHHHHHHHHHhhhHHHHhhh
Confidence 77778888888876 57999999999999999999999888774 2 2467999999999999999998775
No 132
>PLN02825 amino-acid N-acetyltransferase
Probab=99.55 E-value=1.6e-13 Score=160.17 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=146.5
Q ss_pred hhHhHHHHHHHHHhCCCeEEEEEccchHhhhh---ccccc----CC---CcchHHHHHHHHHHHHHHHHHHH--------
Q psy3752 615 IIKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKIQ----NI---DRSTADYMGMLATIINSLALFDI-------- 676 (1012)
Q Consensus 615 ~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~---~~~~~----~~---~~~~~~~~~~~~~~~~~~~l~~~-------- 676 (1012)
.+.+++.+|+.|...|.++|||||||...... .+... |+ ++.+++.. +.+.+..+..+.+.
T Consensus 33 ~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~-~~~~G~v~~~i~a~Ls~~~~v~ 111 (515)
T PLN02825 33 HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQAS-MEAAGKIRVMIEAKLSPGPSIP 111 (515)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHH-HHHHHHHHHHHHHhhccccchh
Confidence 57899999999999999999999999443332 22221 22 55666663 66677766666665
Q ss_pred -HHhcCCce----eEeehhchhh------------------hhhhcchHHHHHHhhCCCEEEEcC----cCCC-CCCccH
Q psy3752 677 -LNKSGIIS----HVMSAISIEK------------------FLESYIPLNAIKYLEEGKVVIFAG----GIGN-PFFTTD 728 (1012)
Q Consensus 677 -l~~~gi~a----~~l~~~~~~~------------------~~~~~~~~~l~~~L~~g~VPVi~G----~~g~-~~~s~D 728 (1012)
|+++|+++ +++++.+.+. .++.++.+.+..+|++|.|||+++ ..|. -++++|
T Consensus 112 ~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD 191 (515)
T PLN02825 112 NLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTY 191 (515)
T ss_pred HHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHH
Confidence 58888888 6776655411 156789999999999999999987 1222 246799
Q ss_pred HHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hh---------c--------------C--
Q psy3752 729 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KK---------L--------------E-- 780 (1012)
Q Consensus 729 ~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G---------~--------------~-- 780 (1012)
.+|+.+|.+|+||+||++|||+ +++.+ .++|++++.+|+.+ .+ . .
T Consensus 192 ~vA~avA~aL~A~KLI~ltd~~-~~~~~------g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
T PLN02825 192 EVATACALAIGADKLICIVDGP-ILDEN------GRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDS 264 (515)
T ss_pred HHHHHHHHHcCCCeEEEEeCcc-eecCC------CCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhcccccccccccccc
Confidence 9999999999999999999977 55433 45677776655433 11 0 0
Q ss_pred ------------------------------c-------------------------ccHHHHHHHHhCCC-cEEEEecCC
Q psy3752 781 ------------------------------I-------------------------MDSTAFSFCRDQKL-PIRVFSIIK 804 (1012)
Q Consensus 781 ------------------------------v-------------------------~~~~aa~~a~~~gi-~v~I~~g~~ 804 (1012)
. .++.+|..|.+.|+ +++++++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~ 344 (515)
T PLN02825 265 VNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTI 344 (515)
T ss_pred ccccccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCC
Confidence 0 01456777788899 699999999
Q ss_pred chhHHH-HhcCCCcceEEEEe
Q psy3752 805 SGALKR-VIEGKNEGTLVYEI 824 (1012)
Q Consensus 805 ~~~i~~-~l~Ge~~GT~I~~~ 824 (1012)
++.+.. ++.-+++||.|+..
T Consensus 345 ~gall~elft~dg~gt~i~~~ 365 (515)
T PLN02825 345 EGVLLLELFTRDGMGTMIASD 365 (515)
T ss_pred CchHHHHhhccCCceeEeccC
Confidence 998876 55567789999876
No 133
>KOG1422|consensus
Probab=99.41 E-value=2.2e-12 Score=128.60 Aligned_cols=165 Identities=21% Similarity=0.431 Sum_probs=124.8
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~ 80 (1012)
++|....||...+++||+++.|.|++|+|..|+...+||..|-++|++++|++.+---++.|.+-+ ...++..
T Consensus 36 ~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E~asa-------g~diF~k 108 (221)
T KOG1422|consen 36 VPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPESASA-------GSDIFAK 108 (221)
T ss_pred CCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHHHHhh-------HHHHHHH
Confidence 478999999999999999999999999999999999999999999999998755422223332222 2223333
Q ss_pred HHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccC---CCcccCCCcCHHHHHHHHHhhhhh-----hccccccCCCch
Q psy3752 81 LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK---NKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASP 152 (1012)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~---~~fL~Gd~~TlADi~l~~~L~~l~-----~~~~~l~~~~P~ 152 (1012)
+..+.....+ ..-+...+.+.+.|..|+.+|.. ++||.||++|+||+.+.|-|+.++ +.+++++.+.+.
T Consensus 109 F~~fi~ksk~---~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~~~IP~~lt~ 185 (221)
T KOG1422|consen 109 FSAFIKKSKD---AANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKNFEIPASLTG 185 (221)
T ss_pred HHHHHhCchh---hccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcCCCCchhhhH
Confidence 2222111111 11123445677788999999974 799999999999999999998875 346788888999
Q ss_pred hHHHHHHHhcCCccccccchhhhh
Q psy3752 153 LIKYAERIFSRPSYMESLTPAEKI 176 (1012)
Q Consensus 153 L~aw~~ri~~rp~~~~~lt~~~~l 176 (1012)
+.+|+..+.++.+|..+-+ -.+.
T Consensus 186 V~rYl~~~ya~d~F~~tcp-~d~e 208 (221)
T KOG1422|consen 186 VWRYLKNAYARDEFTNTCP-ADQE 208 (221)
T ss_pred HHHHHHHHHhHHHhhcCCc-hHHH
Confidence 9999999999999998876 4443
No 134
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=4.5e-12 Score=133.83 Aligned_cols=158 Identities=25% Similarity=0.311 Sum_probs=104.9
Q ss_pred eEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752 350 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 429 (1012)
Q Consensus 350 ~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~ 429 (1012)
.-+++--||.+++| +.|+ .+..|. +-++.+++..+. ..+.+-+.+-...+-.++.++.-+-.+
T Consensus 72 ~av~vEvN~ETDFV-----AkN~--~F~~l~-~~ia~~~l~~~~---------~~ve~l~~~~~~~~~tv~e~~~~~~Ak 134 (296)
T COG0264 72 KAVLVEVNCETDFV-----AKNA--EFQELA-NKIAKAALEKKP---------ADVEELKAAFEPGGKTVEEEIAALIAK 134 (296)
T ss_pred EEEEEEEeccccce-----eCCh--hHHHHH-HHHHHHHHHhCc---------ccHHHHHhhhcccCccHHHHHHHHHHH
Confidence 34566677776655 3333 344444 334444444331 123333332222222455555555544
Q ss_pred hhhhh-hhhccccc-cCceEEEEEe--CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH----------
Q psy3752 430 LGKKI-LNISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ---------- 495 (1012)
Q Consensus 430 ~~~~a-~k~~~r~~-~eG~v~~~~~--~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~---------- 495 (1012)
-+.+- .+|..... .+|.+++|+| +++||||++++. + ...+++++|||||||++|.+++.
T Consensus 135 IGENi~lRR~~~~~~~~~~v~~Y~H~~griGVlv~~~~~-~------~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~ 207 (296)
T COG0264 135 IGENISLRRFAVLEAGDGVVGSYLHGNGRIGVLVALKGG-A------ADEELAKDIAMHIAAMNPQYLSREDVPAEVVEK 207 (296)
T ss_pred hccceeEEEEEEeecCcccEEEEEeCCCcEEEEEEEecc-c------hHHHHHHHHHHHHHhcCCccCChhhCCHHHHHH
Confidence 33222 23333333 3478999999 689999999998 3 35689999999999999997654
Q ss_pred ------------------------------------hhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCee
Q psy3752 496 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 537 (1012)
Q Consensus 496 ------------------------------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~i 537 (1012)
|.|+|++|+++||++++++. +++|.+|+||++|+||
T Consensus 208 Er~i~~~~~~~~gKP~~i~eKiVeGr~~Kf~~E~~Ll~Q~fV~d~~~TV~~~lke~------~~~v~~FvR~evGegi 279 (296)
T COG0264 208 EREIFLAQLKAEGKPENIVEKIVEGRMNKFLAEVCLLEQPFVKDPKKTVEQLLKEA------NAKVTEFVRFEVGEGI 279 (296)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHhHHHHHHHHHHhhccCceecCcchhHHHHHHhc------CceeeeeeeeeccCCc
Confidence 78999999999999999876 7899999999999987
No 135
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=99.37 E-value=4.5e-12 Score=137.05 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=103.9
Q ss_pred eEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752 350 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 429 (1012)
Q Consensus 350 ~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~ 429 (1012)
..+++--||.+++|. ++..++.|.-.+. .++... ....+.+..++....+..+ .++..+--+
T Consensus 69 ~~~ivElncETDFVA-------rne~F~~l~~~ia-~~~~~~---------~~~~~e~l~~~~~~~~~tv-d~i~~~~a~ 130 (290)
T TIGR00116 69 KAVIVEVNSETDFVA-------KNAGFKEFANKLL-DELKAN---------KITTLEELQAQELENREKV-EYLAALAAK 130 (290)
T ss_pred EEEEEEEecCCcccc-------CChHHHHHHHHHH-HHHHhc---------CCCCHHHHhhccccCCCcH-HHHHHHHHH
Confidence 567888888877663 3445655554433 333221 1122333322211111245 333333322
Q ss_pred -hhhhhhhhcccccc-CceEEEEEe--CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH----------
Q psy3752 430 -LGKKILNISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ---------- 495 (1012)
Q Consensus 430 -~~~~a~k~~~r~~~-eG~v~~~~~--~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~---------- 495 (1012)
|-.-.-++..++.+ +|.+++|+| |++||||++++++|. +|+++|||||+|++|.+++.
T Consensus 131 iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkigvlv~~~~~~~~--------~~ak~iAmhIaA~~P~~l~~~~vp~~vie~ 202 (290)
T TIGR00116 131 IGENINLRRVAVLEGDSNVIGSYLHAGARIGVLVALKGKADE--------ELAKHIAMHVAASKPQFIDPDDVSAEVVKK 202 (290)
T ss_pred hccceEEEEEEEEecCCCcEEEEEcCCCcEEEEEEEecCchH--------HHHHHHHHHHHhcCCccCchhhCCHHHHHH
Confidence 32222345555554 379999999 799999999997662 58999999999999987544
Q ss_pred ------------------------------------hhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCee
Q psy3752 496 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 537 (1012)
Q Consensus 496 ------------------------------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~i 537 (1012)
|+|+|++|+++||++++++ .+++|.+|+||++|+|+
T Consensus 203 Erei~~~~~~~~gKP~~i~eKIv~Grl~Kf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~~~v~~F~R~~vGegi 274 (290)
T TIGR00116 203 ERQIQTDQAELSGKPKEIAEKMVEGRMKKFLAEISLLGQKFVMDPSKTVGQFLKE------KNAKVTEFIRFEVGEGI 274 (290)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHhhhHHHHHhhhceeeecccccCCccCHHHHHHH------cCCEEEEEEEEEecCCc
Confidence 6899999999999999986 35999999999999985
No 136
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....
Probab=99.34 E-value=3.6e-12 Score=134.02 Aligned_cols=109 Identities=28% Similarity=0.369 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHhhh-hhhhhhcccccc-CceEEEEEe--CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCC
Q psy3752 417 GKLSKAEEILRIKLG-KKILNISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPIN 492 (1012)
Q Consensus 417 ~d~~~a~~~l~~~~~-~~a~k~~~r~~~-eG~v~~~~~--~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~ 492 (1012)
..+..++..+.-+-+ .-.-+++.++.+ +|.+++|+| ||+|+||+++++++.. ++++++|||||+|++|.+
T Consensus 63 ~tv~d~i~~~i~~igEnI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~------~~~ak~iAmhIaA~~P~~ 136 (221)
T PF00889_consen 63 KTVKDAIAELIAKIGENIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSA------KEFAKDIAMHIAAMNPKY 136 (221)
T ss_dssp SHHHHHHHHHHHHH-S-EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGG------HHHHHHHHHHHHHH--SB
T ss_pred ccHHHHHHHHHHHhCCCEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchH------HHHHHHHHHHHhhhCccc
Confidence 445555554444422 222455555554 799999999 7999999999999865 689999999999999986
Q ss_pred hhH----------------------------------------------hhcccccCCCccHHHHHHHHHHHhCCceEEE
Q psy3752 493 LDQ----------------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIR 526 (1012)
Q Consensus 493 ~~~----------------------------------------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~ 526 (1012)
++. |+|+|++|+++||+|++++..++ |+|.
T Consensus 137 l~~~~vp~~~~~~E~~i~~~~~~~~gKpe~i~ekIv~Gkl~k~~~e~~Ll~Q~fv~D~~~tV~~~l~~~~~~----i~v~ 212 (221)
T PF00889_consen 137 LSEEDVPAEVLEKEKEIAKEQAKAEGKPENIIEKIVEGKLKKFYKENCLLEQPFVKDPKKTVKQYLKEVGKE----IKVV 212 (221)
T ss_dssp SSCTGS-CCHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHCBTCCSBETTETTSBHHHHHHCTTHH-----EEE
T ss_pred cCcccCCHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhhHhheehheeecCCCccCCCCccHHHHHHhcCCC----cEEE
Confidence 543 78999999999998888876554 8999
Q ss_pred EEEEeecCC
Q psy3752 527 RFKLFKTNN 535 (1012)
Q Consensus 527 rf~~~~~g~ 535 (1012)
+|.||++||
T Consensus 213 ~F~R~~vGE 221 (221)
T PF00889_consen 213 GFVRFEVGE 221 (221)
T ss_dssp EEEEEETTT
T ss_pred EEEEEecCC
Confidence 999999986
No 137
>PRK09377 tsf elongation factor Ts; Provisional
Probab=99.33 E-value=1.2e-11 Score=133.68 Aligned_cols=155 Identities=25% Similarity=0.295 Sum_probs=106.9
Q ss_pred eEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752 350 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 429 (1012)
Q Consensus 350 ~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~ 429 (1012)
.-+++.-||.+++|. ++..+..|.-.+. .++.... ...+.+..++-. .+..+..++..+.-+
T Consensus 70 ~~~~vElncETDFVA-------rne~F~~l~~~i~-~~~l~~~---------~~~~e~ll~~~~-~g~tv~d~i~~~~~~ 131 (290)
T PRK09377 70 KGVLVEVNSETDFVA-------KNEDFQALANEVA-EAALAAK---------PADVEALLALKL-DGGTVEEARTELIAK 131 (290)
T ss_pred EEEEEEEecCCcccc-------CChHHHHHHHHHH-HHHHhcC---------CCCHHHHHhccc-cCCcHHHHHHHHHHH
Confidence 568888888887763 4445666654443 3333221 112333222211 233666666666554
Q ss_pred hhhh-hhhhccccc-cCceEEEEEe--CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH----------
Q psy3752 430 LGKK-ILNISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ---------- 495 (1012)
Q Consensus 430 ~~~~-a~k~~~r~~-~eG~v~~~~~--~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~---------- 495 (1012)
-+.+ .-+|..++. ++|.|++|+| |++||||+++++++ +|+++|||||+|++|.+++.
T Consensus 132 iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkigvlV~~~~~~~---------~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~ 202 (290)
T PRK09377 132 IGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDE---------ELAKDIAMHIAAMNPEYLSREDVPAEVVEK 202 (290)
T ss_pred hcCceEEEEEEEEeecCCEEEEEEcCCCcEEEEEEEccCcH---------HHHHHHHHHHHhcCCccCChhhCCHHHHHH
Confidence 3322 234555554 4789999999 79999999998743 58999999999999986544
Q ss_pred ------------------------------------hhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCee
Q psy3752 496 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 537 (1012)
Q Consensus 496 ------------------------------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~i 537 (1012)
|+|+|++|+++||++++++ .+++|.+|+||++||++
T Consensus 203 E~~i~~~~~~~~gKP~~i~eKIv~Grl~Kf~~e~~Ll~Q~fi~D~~~tV~~~l~~------~~i~v~~F~R~evGe~~ 274 (290)
T PRK09377 203 EREIAKEQAKEEGKPEEIVEKIVEGRLNKFLKEVVLLEQPFVKDPKKTVGQLLKE------AGAKVVGFVRFEVGEGI 274 (290)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHhHHHHHHhhhceeccCcccCCCCcCHHHHHHH------cCCEEEEEEEEEecCcc
Confidence 7899999999999999886 36999999999999974
No 138
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.28 E-value=1.7e-11 Score=114.95 Aligned_cols=106 Identities=42% Similarity=0.803 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhh
Q psy3752 60 PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRL 139 (1012)
Q Consensus 60 ~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l 139 (1012)
|.+|+++++|+.+++..+.+......... ....+.....+.+.|..+|++|++++|++|+++|+|||++++.++++
T Consensus 1 p~~ra~~r~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~ 76 (107)
T cd03186 1 PVARARSRLLMHRIEQDWYPLVDTIEKGR----KKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRL 76 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHH
Confidence 35789999998888776655543322211 23345667888999999999999999999999999999999998776
Q ss_pred hhccccccCCCchhHHHHHHHhcCCccccc
Q psy3752 140 DYYGINLSKSASPLIKYAERIFSRPSYMES 169 (1012)
Q Consensus 140 ~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~ 169 (1012)
...+.++...+|++.+|+++|.+||+|++.
T Consensus 77 ~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 77 PALGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHcCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 656665555799999999999999999864
No 139
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.22 E-value=9.8e-11 Score=111.59 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------cccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHH
Q psy3752 59 DPLMRARARLMLLNFEKEIFIHLYMLENE---------RNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLD 129 (1012)
Q Consensus 59 ~~~era~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlAD 129 (1012)
|+.+|+++++|+.+....+.+........ .........+.....+.+.|..||++|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999888777765543322211 122334556777888999999999999988999999999999
Q ss_pred HHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCcc
Q psy3752 130 VVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY 166 (1012)
Q Consensus 130 i~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~ 166 (1012)
|++++.+.++...+.++...+|+|.+|++++.+||++
T Consensus 81 i~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVVKLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhcCCCCccccHHHHHHHHHHHhccCC
Confidence 9999999988777776656799999999999999974
No 140
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.21 E-value=5e-11 Score=113.40 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhh
Q psy3752 58 SDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLW 137 (1012)
Q Consensus 58 ~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~ 137 (1012)
.+|..++++++|+.+.+..+.+.+........... +..+.....+.+.|..+|++|++++|++|+++|+||+++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~ 80 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPE-ESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVR 80 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCc-ccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHH
Confidence 47889999999987777666655443222111111 12456678899999999999999999999999999999999886
Q ss_pred hhhhcccc--ccCCCchhHHHHHHHhcCCccccc
Q psy3752 138 RLDYYGIN--LSKSASPLIKYAERIFSRPSYMES 169 (1012)
Q Consensus 138 ~l~~~~~~--l~~~~P~L~aw~~ri~~rp~~~~~ 169 (1012)
++...... ....||+|.+|++++.+||+|++.
T Consensus 81 ~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 81 QFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHhhhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 65432211 136699999999999999999864
No 141
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.15 E-value=2.6e-10 Score=109.03 Aligned_cols=107 Identities=21% Similarity=0.157 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhh---hccc--------cccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCc
Q psy3752 57 SSDPLMRARARLMLLNFEKEIFIHLYMLE---NERN--------KTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEF 125 (1012)
Q Consensus 57 p~~~~era~v~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~ 125 (1012)
|.++.+|+++++|+.+....+.+.+.... .... .......+.....+.+.|+.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 57889999999998777766655432211 1111 012233345567889999999999999999999999
Q ss_pred CHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCC
Q psy3752 126 SMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRP 164 (1012)
Q Consensus 126 TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp 164 (1012)
|+|||++++.+.|+...+. ....+|+|.+|++++++||
T Consensus 82 t~ADi~l~~~~~~~~~~~~-~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALARGP-LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHcCc-ccccCchHHHHHHHHhcCC
Confidence 9999999998888765554 3456999999999999987
No 142
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.13 E-value=1.4e-10 Score=109.89 Aligned_cols=107 Identities=25% Similarity=0.274 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-----cccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYMLENERN-----KTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 136 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L 136 (1012)
+|+++++|+.+....+.+.......... .......+.....+.+.+..+|+.|++++||+|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 4788999987777766555432211111 11133345667789999999999999899999999999999999999
Q ss_pred hhhhhccccccCCCchhHHHHHHHhcCCccccc
Q psy3752 137 WRLDYYGINLSKSASPLIKYAERIFSRPSYMES 169 (1012)
Q Consensus 137 ~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~ 169 (1012)
.++...+.++ +.+|++.+|+++|.++|+|+++
T Consensus 82 ~~~~~~~~~~-~~~p~l~~w~~~~~~~p~~k~~ 113 (114)
T cd03188 82 RWAPGVGLDL-SDWPNLAAYLARVAARPAVQAA 113 (114)
T ss_pred HHHhhcCCCh-hhChHHHHHHHHHHhCHHhHhh
Confidence 8876655543 4689999999999999999875
No 143
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.13 E-value=2.7e-10 Score=110.11 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhh
Q psy3752 61 LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 140 (1012)
Q Consensus 61 ~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~ 140 (1012)
.+|+++++|+.+++..+.+.+....... ....+.....+.+.|+.||++|++++|++|+++|+|||++++.+.++.
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~ 77 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAK----GEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFR 77 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 5789999998887777665543332211 223345677888999999999998999999999999999999988764
Q ss_pred hc----ccc--ccCCCchhHHHHHHHhcCCccccccc
Q psy3752 141 YY----GIN--LSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 141 ~~----~~~--l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
.. +.+ ....+|++.+|+++|+++|+|++++.
T Consensus 78 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 114 (126)
T cd03185 78 AYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLP 114 (126)
T ss_pred HHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCC
Confidence 32 333 13568999999999999999998876
No 144
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.06 E-value=3.5e-10 Score=108.06 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc---cccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYMLENE---RNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR 138 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~ 138 (1012)
+|+++++|+.+....+.+........ ..+ ...+.....+.+.|..||++|++++||+|+++|+||+++++++.+
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~ 78 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGA---EPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVST 78 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHH
Confidence 47788888766655554333221111 111 123456678899999999999888999999999999999999988
Q ss_pred hhh-ccccccCCCchhHHHHHHHhcCCcccccc
Q psy3752 139 LDY-YGINLSKSASPLIKYAERIFSRPSYMESL 170 (1012)
Q Consensus 139 l~~-~~~~l~~~~P~L~aw~~ri~~rp~~~~~l 170 (1012)
+.. .+.+. ..+|+|.+|+++|.++|+|++..
T Consensus 79 ~~~~~~~~~-~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 79 LEALLPLDL-SKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred HHHhcCCCh-hhCchHHHHHHHHHcccchHHHH
Confidence 765 44443 45899999999999999999754
No 145
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.06 E-value=7.5e-10 Score=106.15 Aligned_cols=108 Identities=18% Similarity=0.327 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc---CCCcccCCCcCHHHHHHHHH
Q psy3752 59 DPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL---KNKYMLGDEFSMLDVVIAPL 135 (1012)
Q Consensus 59 ~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~---~~~fL~Gd~~TlADi~l~~~ 135 (1012)
|+.+|+++++++.+.. .+...++.....+.+ . ..+.+.++.||+.|+ +++|++| ++|+|||+++|+
T Consensus 1 d~~~ra~~~~~~~~~~-~~~~~~~~~~~~~~~--~-------~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~ 69 (120)
T cd03203 1 DPAKREFADELLAYTD-AFTKALYSSLIKGDP--S-------AEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPF 69 (120)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCc--h-------HHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHH
Confidence 5678999999966632 232222222111111 1 234566777777775 5899999 999999999999
Q ss_pred hhhhhh-----ccccccCCCchhHHHHHHHhcCCccccccchhhhhh
Q psy3752 136 LWRLDY-----YGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 177 (1012)
Q Consensus 136 L~~l~~-----~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt~~~~l~ 177 (1012)
+.++.. .++++.+.||+|.+|+++|.+||+|+++.++-++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~ 116 (120)
T cd03203 70 IERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDPQELL 116 (120)
T ss_pred HHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCHHHHH
Confidence 876532 456665679999999999999999999887444444
No 146
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.06 E-value=4.6e-10 Score=107.01 Aligned_cols=108 Identities=20% Similarity=0.162 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----h--hhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHH
Q psy3752 62 MRARARLMLLNFEKEIFIHLYM-----L--ENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP 134 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~ 134 (1012)
+|+++++|+.+....+.+.... . .....+......+.....+.+.|..||++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 4677888866655444222111 0 11112344455566778899999999999999999999999999999999
Q ss_pred Hhhhhhhccc-cccCCCchhHHHHHHHhcCCccccc
Q psy3752 135 LLWRLDYYGI-NLSKSASPLIKYAERIFSRPSYMES 169 (1012)
Q Consensus 135 ~L~~l~~~~~-~l~~~~P~L~aw~~ri~~rp~~~~~ 169 (1012)
++.++...+. ...+.+|+|.+|++++.++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 117 (118)
T cd03187 82 YLQYLMATPFAKLFDSRPHVKAWWEDISARPAWKKV 117 (118)
T ss_pred HHHHHHHccchhhhhcCchHHHHHHHHHhCHHHHhh
Confidence 9877654322 1235699999999999999999865
No 147
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.05 E-value=9e-10 Score=108.93 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhh
Q psy3752 61 LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 140 (1012)
Q Consensus 61 ~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~ 140 (1012)
..|+++++|+.+....+.+..+.... ....+..+.....+.+.|..||++|++++|++|+++|+||+++++.+.++.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~ 79 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGF---ATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFD 79 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhh---ccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHH
Confidence 45788999988887776655443322 233344566778899999999999998999999999999999999987653
Q ss_pred hc-------cccccCCCchhHHHHHHHhcCCccccccc
Q psy3752 141 YY-------GINLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 141 ~~-------~~~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
.. +....+.||+|.+|+++|.++|+|++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~ 117 (142)
T cd03190 80 AVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTN 117 (142)
T ss_pred HHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcC
Confidence 21 11223579999999999999999999876
No 148
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.04 E-value=5.3e-10 Score=107.33 Aligned_cols=110 Identities=19% Similarity=0.295 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHH
Q psy3752 61 LMRARARLMLLNFEKEIFIH----LYMLENERNK-TSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIA 133 (1012)
Q Consensus 61 ~era~v~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~ 133 (1012)
.+|+++++|+.++...+.+. +......... ......+.....+.+.|..+|++|+ .++||+|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 57899999988776555322 1111111101 0122223344668899999999997 458999999999999999
Q ss_pred HHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752 134 PLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 134 ~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
+.+.++...++++ ..+|+|.+|++++.++|+|+++..
T Consensus 82 ~~~~~~~~~~~~~-~~~p~l~~w~~~~~~~p~~~~~~~ 118 (121)
T cd03191 82 PQVYNARRFGVDL-SPYPTIARINEACLELPAFQAAHP 118 (121)
T ss_pred HHHHHHHHhCCCc-ccCcHHHHHHHHHHhChhHHHhCc
Confidence 9998876666554 568999999999999999998765
No 149
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.04 E-value=2.2e-10 Score=108.37 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYM---LENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR 138 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~ 138 (1012)
+|+++++|+.+.+..+.+.+.. .............+.....+.+.|+.+|+.|++++|++|+++|+|||++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~ 80 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRR 80 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence 3678888877666554333211 1111112233345667788999999999999989999999999999999999988
Q ss_pred hhhccccccCCCchhHHHHHHHhcCCcccccc
Q psy3752 139 LDYYGINLSKSASPLIKYAERIFSRPSYMESL 170 (1012)
Q Consensus 139 l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~l 170 (1012)
....+..+...||++.+|++++.++|+|+.++
T Consensus 81 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 81 LEWIGIDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHhccccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 86665554567999999999999999998753
No 150
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.03 E-value=1.2e-09 Score=102.60 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----h-hccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYML----E-NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 136 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L 136 (1012)
+|+++++|+.+....+.+.+... . ...........+...+.+.+.|+.+|++|++++|++|+++|+||+++++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 47788888766655554443211 1 111223334456677889999999999999899999999999999999888
Q ss_pred hhhhhccccccCCCchhHHHHHHHhcCCcc
Q psy3752 137 WRLDYYGINLSKSASPLIKYAERIFSRPSY 166 (1012)
Q Consensus 137 ~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~ 166 (1012)
......+.. ...||+|.+|+++|.++|+|
T Consensus 82 ~~~~~~~~~-~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFELPIE-RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHcccc-cccCchHHHHHHHHHhCCCC
Confidence 533333332 45699999999999999986
No 151
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.02 E-value=6.7e-10 Score=107.45 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcc-cCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhc--CCcccc
Q psy3752 92 SIKGYKRAREEIRDRLITLAPLF-LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFS--RPSYME 168 (1012)
Q Consensus 92 ~~~~~~~~~~~l~~~L~~Le~~L-~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~--rp~~~~ 168 (1012)
.....+...+.+.+.+..+|++| ++++|++|+++|+|||++++.+.+....+.+..+.||+|.+|++++.+ ||+|++
T Consensus 39 ~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~p~~~~ 118 (126)
T cd03183 39 SPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPEAAGYDVFEGRPKLAAWRKRVKEAGNPLFDE 118 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhcchhHHH
Confidence 44555677788999999999974 557899999999999999999888776666555779999999999999 999987
Q ss_pred ccc
Q psy3752 169 SLT 171 (1012)
Q Consensus 169 ~lt 171 (1012)
...
T Consensus 119 ~~~ 121 (126)
T cd03183 119 AHK 121 (126)
T ss_pred HHH
Confidence 543
No 152
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.02 E-value=6.5e-10 Score=107.30 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccC--CCcccCCCcCHHHHHHHHHhhhh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDVVIAPLLWRL 139 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~--~~fL~Gd~~TlADi~l~~~L~~l 139 (1012)
+|++.+.|...++ .+...++..... ++..+...+.+.+.|..+|+.|++ ++|++|+++|+||+++++++.++
T Consensus 2 ~ra~~r~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~ 75 (124)
T cd03184 2 EKAQQKLLLERFS-KVVSAFYKLLGA-----PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERL 75 (124)
T ss_pred hHHHHHHHHHHHh-hhhHHHHHHHhc-----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHH
Confidence 5888888877775 444444433322 222345667888999999999975 89999999999999999998877
Q ss_pred hhccc-----cccCCCchhHHHHHHHhcCCccccccch
Q psy3752 140 DYYGI-----NLSKSASPLIKYAERIFSRPSYMESLTP 172 (1012)
Q Consensus 140 ~~~~~-----~l~~~~P~L~aw~~ri~~rp~~~~~lt~ 172 (1012)
...+. ...+.+|+|.+|+++|.++|++++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~ 113 (124)
T cd03184 76 EALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTD 113 (124)
T ss_pred HHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCC
Confidence 54432 1246699999999999999999988763
No 153
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.99 E-value=1.2e-09 Score=99.90 Aligned_cols=72 Identities=26% Similarity=0.458 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccccc-CCCchhHHHHHHHhcCC
Q psy3752 93 IKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLS-KSASPLIKYAERIFSRP 164 (1012)
Q Consensus 93 ~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~-~~~P~L~aw~~ri~~rp 164 (1012)
.+..+.....+.+.|+.+|+.|.+++|++|+++|+||+++++.+.++...+.... +.||+|.+|+++|.+||
T Consensus 23 ~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHcCC
Confidence 3345667788999999999999999999999999999999999999988887776 78999999999999997
No 154
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.99 E-value=8.7e-10 Score=98.75 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=50.4
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~ 53 (1012)
|+|+.+.+|+.++++||+++||.|+||+|+++|.+|+||.+|++||+++++.+
T Consensus 37 i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 37 VVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 68999999999999999999999999999999999999999999999999754
No 155
>CHL00098 tsf elongation factor Ts
Probab=98.98 E-value=6.5e-10 Score=113.92 Aligned_cols=68 Identities=35% Similarity=0.494 Sum_probs=57.5
Q ss_pred EEeecCCeeeeeccC-CceEEEEEecCCc------h---HHHHHHHHHHhcc-CCcccCCcCCChHHHHHHHHHHHHHH
Q psy3752 529 KLFKTNNNLISYLHD-NKIGVIVEYNGDN------E---SAVKDVAMHIAAM-KPIALSSDQIPKKIIEKEYSLAVLKA 596 (1012)
Q Consensus 529 ~~~~~g~~i~~y~H~-~~~g~~v~~~~~~------~---~~~~~~amhi~a~-~p~~~~~~~v~~~~i~~ek~i~v~K~ 596 (1012)
.|...++.+++|+|. |++||||++++.. + ++|++|||||||| +|.|+++++||++++++|++++..++
T Consensus 50 ~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfVArn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~ 128 (200)
T CHL00098 50 TRITTEGLIESYIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKD 128 (200)
T ss_pred ccccccCeEEEEEecCCCEEEEEEEecCcccccccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHH
Confidence 344444569999996 7999999998742 2 5799999999999 79999999999999999999887775
No 156
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.97 E-value=1.6e-09 Score=106.37 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHH-HHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHHHHhhh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGY-KRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWR 138 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~~~L~~ 138 (1012)
+.+++++++..+.+.. ..++.......+...+.. ......+.+.|..||++|+ +++|++|+++|+||+++++.+.+
T Consensus 3 e~a~iD~i~~~v~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 3 ERALIDMYVEGTADLM-EMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHH
Confidence 5677888866665433 222222221111111111 2223456789999999998 77899999999999999999988
Q ss_pred hhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752 139 LDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 139 l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
+..........||+|.+|++++.++|++++.+.
T Consensus 82 ~~~~~~~~l~~~P~l~~~~~rv~~~P~vk~~~~ 114 (137)
T cd03208 82 VEELDPSLLSDFPLLQAFKTRISNLPTIKKFLQ 114 (137)
T ss_pred HHHhchhhhccChHHHHHHHHHHcCHHHHHHHh
Confidence 765444444679999999999999999998765
No 157
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.96 E-value=2.4e-09 Score=102.79 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDY 141 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~ 141 (1012)
++++++++...+.+.. ..+........ .....+.....+.+.|..||++|++++||+|+++|+||+++++.+.|+..
T Consensus 2 e~~~id~~~~~~~d~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~ 78 (121)
T cd03209 2 ERIRVDMLEQQAMDLR-MGLARICYSPD--FEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRI 78 (121)
T ss_pred chHHHHHHHHHHHHHH-HHHHHhhcCcc--hHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHH
Confidence 4678888866655432 22222212111 12333456677889999999999989999999999999999999988875
Q ss_pred ccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752 142 YGINLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 142 ~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
.+....+.||+|.+|++++.++|++++.+.
T Consensus 79 ~~~~~~~~~P~l~~~~~rv~~~p~vk~~~~ 108 (121)
T cd03209 79 FEPDCLDAFPNLKDFLERFEALPKISAYMK 108 (121)
T ss_pred hCccccccChHHHHHHHHHHHCHHHHHHHh
Confidence 443445679999999999999999998765
No 158
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=98.95 E-value=2.4e-09 Score=98.24 Aligned_cols=95 Identities=12% Similarity=0.132 Sum_probs=73.7
Q ss_pred HHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccC
Q psy3752 43 NEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLG 122 (1012)
Q Consensus 43 l~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~G 122 (1012)
+|||++. ..|+|.++.+++.+++|+..+...+.. . ...++.+.+..+|++|++++|++|
T Consensus 1 ~r~~~~~---~~~~~~~~~~~~~vd~~~d~~~~~l~~--------~----------~~~~~~~~l~~le~~L~~~~fl~G 59 (96)
T cd03200 1 ARFLYRL---LGPAPNAPNAATNIDSWVDTAIFQLAE--------G----------SSKEKAAVLRALNSALGRSPWLVG 59 (96)
T ss_pred CchHHHH---hcccCCCchHHHHHHHHHHHHHHHHhc--------C----------CHHHHHHHHHHHHHHHcCCCccCC
Confidence 4799998 259999999999999997654423220 0 124455788899999999999999
Q ss_pred CCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhc
Q psy3752 123 DEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFS 162 (1012)
Q Consensus 123 d~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~ 162 (1012)
+++|+|||++++.+.+. +... +.||+|.+|++||.+
T Consensus 60 d~~tiADi~l~~~l~~~---~~~~-~~~p~l~~w~~r~~~ 95 (96)
T cd03200 60 SEFTVADIVSWCALLQT---GLAS-AAPANVQRWLKSCEN 95 (96)
T ss_pred CCCCHHHHHHHHHHHHc---cccc-ccChHHHHHHHHHHh
Confidence 99999999999888653 3322 468999999999975
No 159
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.95 E-value=1.6e-09 Score=104.54 Aligned_cols=77 Identities=17% Similarity=0.346 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhcccC----------------CCcccCCCcCHHHHHHHHHhhhhhh-----ccccccCCCchhHH
Q psy3752 97 KRAREEIRDRLITLAPLFLK----------------NKYMLGDEFSMLDVVIAPLLWRLDY-----YGINLSKSASPLIK 155 (1012)
Q Consensus 97 ~~~~~~l~~~L~~Le~~L~~----------------~~fL~Gd~~TlADi~l~~~L~~l~~-----~~~~l~~~~P~L~a 155 (1012)
+.....+...|..||.+|.+ ++||+|+++|+|||++++.+.++.. .++++...||+|.+
T Consensus 28 e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~a 107 (134)
T cd03198 28 ENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLWR 107 (134)
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHHH
Confidence 55667888999999999976 6799999999999999999887643 25565567999999
Q ss_pred HHHHHhcCCccccccchhh
Q psy3752 156 YAERIFSRPSYMESLTPAE 174 (1012)
Q Consensus 156 w~~ri~~rp~~~~~lt~~~ 174 (1012)
|+++|.+||+|++++. .+
T Consensus 108 w~~ri~aRPsfk~t~~-~~ 125 (134)
T cd03198 108 YLKNAYQREEFTNTCP-AD 125 (134)
T ss_pred HHHHHHCCHHHHHHcC-CH
Confidence 9999999999999887 44
No 160
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.95 E-value=2.9e-09 Score=102.14 Aligned_cols=74 Identities=22% Similarity=0.448 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhcccC-CCcccCCCcCHHHHHHHHHhhhhhhc-----cccccCCCchhHHHHHHHhcCCccccccc
Q psy3752 98 RAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWRLDYY-----GINLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 98 ~~~~~l~~~L~~Le~~L~~-~~fL~Gd~~TlADi~l~~~L~~l~~~-----~~~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
...+.+.+.|..||.+|++ ++||+||++|+||+++++++.++... ++.+.+.+|+|.+|+++|.+||+|+++++
T Consensus 30 ~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~~ 109 (121)
T cd03201 30 GTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTKA 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcCC
Confidence 3456788899999999984 79999999999999999987666532 33344679999999999999999999887
No 161
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.2e-09 Score=113.00 Aligned_cols=144 Identities=18% Similarity=0.293 Sum_probs=110.3
Q ss_pred CCCccEEEeCC---EeeccHHHHHHHHhhhCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHH
Q psy3752 23 YGQVPILVERD---LILYESNIINEYIDERFP-----YPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIK 94 (1012)
Q Consensus 23 ~gkVPvL~ddg---~~I~ES~aIl~YL~~~~p-----~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1012)
.-+||||.|.. .+=.||..|++-+...|. ...|||.+ -|.+++.+..++.+.+-...+.. +....++
T Consensus 127 RvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~---GFA~tq~ 201 (324)
T COG0435 127 RVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKA---GFATTQE 201 (324)
T ss_pred ceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeee---cccchHH
Confidence 45699999843 455699999999987764 24588864 46788888776665543333333 2234456
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-------cccccCCCchhHHHHHHHhcCCccc
Q psy3752 95 GYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-------GINLSKSASPLIKYAERIFSRPSYM 167 (1012)
Q Consensus 95 ~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-------~~~l~~~~P~L~aw~~ri~~rp~~~ 167 (1012)
..+++...+-..|+.||+.|+++.||+||++|-||+-+|+.|.+++.. +..-...||+|..|...+.+.|+|.
T Consensus 202 aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~ 281 (324)
T COG0435 202 AYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFA 281 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccc
Confidence 677788888899999999999999999999999999999999777532 2222345999999999999999999
Q ss_pred cccc
Q psy3752 168 ESLT 171 (1012)
Q Consensus 168 ~~lt 171 (1012)
.++.
T Consensus 282 ~T~d 285 (324)
T COG0435 282 ETVD 285 (324)
T ss_pred cccc
Confidence 9987
No 162
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.93 E-value=2.1e-09 Score=103.38 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---ccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYMLEN---ERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR 138 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~ 138 (1012)
+|+++++|+.+....+.+.+..... ...+......+.....+.+.|+.+|+.|++++||+|+++|+||+++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~ 80 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLL 80 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHH
Confidence 3678888887776666554322111 1122333445667788899999999999999999999999999999999988
Q ss_pred hhhcccc--ccCCCchhHHHHHHHhcCCccccccc
Q psy3752 139 LDYYGIN--LSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 139 l~~~~~~--l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
+.....+ ..+.+|++.+|++++.++|+|++++.
T Consensus 81 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 115 (123)
T cd03181 81 GFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFG 115 (123)
T ss_pred HHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcC
Confidence 7433322 23568999999999999999998766
No 163
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.93 E-value=1.8e-09 Score=102.47 Aligned_cols=107 Identities=23% Similarity=0.257 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccccHHHHHHHHHHHHHHHHHHHhccc-CCCcccCCCcCHHHHHHHHH
Q psy3752 60 PLMRARARLMLLNFEKEIFIHLYMLENE---RNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAPL 135 (1012)
Q Consensus 60 ~~era~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~Le~~L~-~~~fL~Gd~~TlADi~l~~~ 135 (1012)
|.+|+++++|+.++...+.+........ .........+...+.+.+.+..+|..|+ +++||+| +||+||+++++.
T Consensus 1 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~ 79 (114)
T cd03195 1 PRQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALM 79 (114)
T ss_pred CHhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHH
Confidence 3578999999988888876542221100 0011111224556777888888999985 5589999 599999999999
Q ss_pred hhhhhhccccccCCCchhHHHHHHHhcCCcccccc
Q psy3752 136 LWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170 (1012)
Q Consensus 136 L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~l 170 (1012)
+.|+...++++. |++.+|.+||.+||+|++.+
T Consensus 80 ~~~~~~~g~~l~---p~l~ay~~r~~~rPa~~~~~ 111 (114)
T cd03195 80 LNRLVLNGDPVP---ERLRDYARRQWQRPSVQAWL 111 (114)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHHCCHHHHHHH
Confidence 999988888873 99999999999999998754
No 164
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.92 E-value=2.9e-09 Score=99.62 Aligned_cols=75 Identities=23% Similarity=0.439 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcccCC----------CcccCCCcCHHHHHHHHHhhhhhhccccc----cCCCchhHHHH
Q psy3752 92 SIKGYKRAREEIRDRLITLAPLFLKN----------KYMLGDEFSMLDVVIAPLLWRLDYYGINL----SKSASPLIKYA 157 (1012)
Q Consensus 92 ~~~~~~~~~~~l~~~L~~Le~~L~~~----------~fL~Gd~~TlADi~l~~~L~~l~~~~~~l----~~~~P~L~aw~ 157 (1012)
+....+....++.+.|..||++|.++ +||+|++||+|||++++.+.|+...+++. ...||+|.+|+
T Consensus 23 ~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~ 102 (111)
T cd03204 23 NVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYF 102 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHH
Confidence 34455677888999999999999765 49999999999999999999887666554 25699999999
Q ss_pred HHHhcCCcc
Q psy3752 158 ERIFSRPSY 166 (1012)
Q Consensus 158 ~ri~~rp~~ 166 (1012)
+||.+||+|
T Consensus 103 ~rv~aRpsf 111 (111)
T cd03204 103 ERVLQRESF 111 (111)
T ss_pred HHHHcCCCC
Confidence 999999986
No 165
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.87 E-value=6.9e-09 Score=100.41 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccC---CCcccCCCcCHHHHHHHHHhhh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK---NKYMLGDEFSMLDVVIAPLLWR 138 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~---~~fL~Gd~~TlADi~l~~~L~~ 138 (1012)
++++++++...+.+ +...+........ ....+.....+.+.|..||++|++ ++||+|+++|+||+++++.+.|
T Consensus 3 e~~~vd~~~~~~~d-~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~ 78 (126)
T cd03210 3 EAALIDMVNDGVED-LRLKYVRMIYQNY---EAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDI 78 (126)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHH
Confidence 56778877555543 3333222221111 122244556788999999999974 5899999999999999999988
Q ss_pred hhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752 139 LDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 139 l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
+........+.||+|.+|+++|.++|+|++.+.
T Consensus 79 ~~~~~~~~~~~~P~l~~~~~rv~~~p~v~~~~~ 111 (126)
T cd03210 79 HLVLAPGCLDAFPLLKAFVERLSARPKLKAYLE 111 (126)
T ss_pred HHHhChHhhhcChHHHHHHHHHHhCcHHHHHHh
Confidence 765433335679999999999999999998765
No 166
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=98.86 E-value=4e-09 Score=108.25 Aligned_cols=70 Identities=36% Similarity=0.517 Sum_probs=57.6
Q ss_pred EEEeecCCeeeeeccC-CceEEEEEecCC------ch---HHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHHH
Q psy3752 528 FKLFKTNNNLISYLHD-NKIGVIVEYNGD------NE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQ 597 (1012)
Q Consensus 528 f~~~~~g~~i~~y~H~-~~~g~~v~~~~~------~~---~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~~ 597 (1012)
.-|....+-|++|+|+ |+.|+||++.+. ++ .++++||||||||+|.|+++++||++++++|++++..++.
T Consensus 52 ~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFVa~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~ 131 (198)
T PRK12332 52 AGRVAAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQAL 131 (198)
T ss_pred ccccccCceEEEEEecCCCEEEEEEEeccCCccccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHH
Confidence 3444444459999996 799999977653 32 4799999999999999999999999999999998887763
No 167
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.82 E-value=6.6e-09 Score=96.14 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCcc
Q psy3752 97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY 166 (1012)
Q Consensus 97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~ 166 (1012)
+....++.+.++.+|+.|++++|++|+++|+||+++++++.+....+.. ...+|+|.+|++++.++|+|
T Consensus 32 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 32 ETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPEGGVD-LEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhccCCC-hhhCcHHHHHHHHHHhCcCC
Confidence 4567789999999999999999999999999999999998765544433 35699999999999999986
No 168
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.79 E-value=9.6e-09 Score=89.66 Aligned_cols=53 Identities=36% Similarity=0.720 Sum_probs=50.0
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~ 53 (1012)
|+|+.+.++...++++|.+.||.|+||+|++||.+++||.+|++||+++||++
T Consensus 22 i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 22 IPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 57999999988889999999999999999999999999999999999999864
No 169
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.79 E-value=8.7e-09 Score=95.98 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYML-----ENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 136 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L 136 (1012)
+|+++++|+.+....+.+.+... ..+......+..+....++.+.++.||..|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 47888998766555444332111 0112333445556778889999999999998889999999999999999999
Q ss_pred hhhhhccccccCCCchhHHHHHHHh
Q psy3752 137 WRLDYYGINLSKSASPLIKYAERIF 161 (1012)
Q Consensus 137 ~~l~~~~~~l~~~~P~L~aw~~ri~ 161 (1012)
.++...+.+ ...+|+|.+|+++++
T Consensus 82 ~~~~~~~~~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADEGGFD-LADYPAIRAWLARIE 105 (105)
T ss_pred HhccccCCC-hHhCccHHHHHHhhC
Confidence 988766665 456999999999874
No 170
>KOG4244|consensus
Probab=98.78 E-value=4.4e-08 Score=101.66 Aligned_cols=153 Identities=20% Similarity=0.297 Sum_probs=101.5
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~ 80 (1012)
||||.+.- ++...++.|++|.++.+|+.+.||..|..+|.++|.-+..+| +.++++.+.+....+..++..
T Consensus 76 IpYE~~~~-------~~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~--~e~~a~s~Al~rm~dnhL~~~ 146 (281)
T KOG4244|consen 76 IPYEIVDC-------SLKRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLS--AEQRAQSRALSRMADNHLFWI 146 (281)
T ss_pred CCceeccc-------cceeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 46665533 233568899999999999999999999999999997444233 345555544422222221111
Q ss_pred HHHh----------------------------h----hccc-------cccHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q psy3752 81 LYML----------------------------E----NERN-------KTSIKGYKRAREEIRDRLITLAPLFLKNKYML 121 (1012)
Q Consensus 81 ~~~~----------------------------~----~~~~-------~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~ 121 (1012)
+... . ..+. .-..-..++..+.+.+.|..++..|++++||.
T Consensus 147 l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg~Kkflf 226 (281)
T KOG4244|consen 147 LLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLHRDLRAISDYLGDKKFLF 226 (281)
T ss_pred HHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 1000 0 0000 00000113345667889999999999999999
Q ss_pred CCCcCHHHHHHHHHhhhhhhcccc------ccCCCchhHHHHHHHhcC
Q psy3752 122 GDEFSMLDVVIAPLLWRLDYYGIN------LSKSASPLIKYAERIFSR 163 (1012)
Q Consensus 122 Gd~~TlADi~l~~~L~~l~~~~~~------l~~~~P~L~aw~~ri~~r 163 (1012)
|+++|-+|+++|+.|..+.+ ++. +..++|+|..|.+|+++.
T Consensus 227 Gdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 227 GDKITPADATVFGQLAQVYY-PFRSHISDLLEGDFPNLLEYCERIRKE 273 (281)
T ss_pred CCCCCcceeeehhhhhheec-cCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence 99999999999999977654 321 346799999999999864
No 171
>KOG2903|consensus
Probab=98.77 E-value=4.7e-09 Score=107.54 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=108.6
Q ss_pred CCCccEEEeC---CEeeccHHHHHHHHhhhC---------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3752 23 YGQVPILVER---DLILYESNIINEYIDERF---------PYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNK 90 (1012)
Q Consensus 23 ~gkVPvL~dd---g~~I~ES~aIl~YL~~~~---------p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1012)
.-+||||-|- ..+=.||..|++.+...| +.-.|+|. .-+++++.+..++.+.+-...+.... .
T Consensus 121 rfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~--~L~~~Ide~N~wvy~~INNGVYk~GF---A 195 (319)
T KOG2903|consen 121 RFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS--SLRAQIDETNSWVYDKINNGVYKCGF---A 195 (319)
T ss_pred eEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH--HHHHHHhhhhceecccccCceeeecc---c
Confidence 3469999974 356679999999999433 33457875 45778888877766655444443332 2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhcccCCC--cccCCCcCHHHHHHHHHhhhhhhc-------cc-cccCCCchhHHHHHHH
Q psy3752 91 TSIKGYKRAREEIRDRLITLAPLFLKNK--YMLGDEFSMLDVVIAPLLWRLDYY-------GI-NLSKSASPLIKYAERI 160 (1012)
Q Consensus 91 ~~~~~~~~~~~~l~~~L~~Le~~L~~~~--fL~Gd~~TlADi~l~~~L~~l~~~-------~~-~l~~~~P~L~aw~~ri 160 (1012)
...+.++...+++-+.|+.+|+.|+++. |+||+++|-||+-+|+.+-+++.. .. .+.++||+|..|..++
T Consensus 196 ~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~i 275 (319)
T KOG2903|consen 196 EKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNI 275 (319)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHH
Confidence 3345567777888889999999999876 999999999999999988666432 11 2456899999999999
Q ss_pred hc-CCccccccchhh
Q psy3752 161 FS-RPSYMESLTPAE 174 (1012)
Q Consensus 161 ~~-rp~~~~~lt~~~ 174 (1012)
.. .|+|..+.. ++
T Consensus 276 Y~~~~~~~~Ttd-~~ 289 (319)
T KOG2903|consen 276 YWNIPGFSSTTD-FN 289 (319)
T ss_pred Hhhccchhhccc-hh
Confidence 98 899998876 44
No 172
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=98.75 E-value=1.6e-08 Score=86.62 Aligned_cols=65 Identities=31% Similarity=0.584 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccc--cccCCCchhHHHHHH
Q psy3752 95 GYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGI--NLSKSASPLIKYAER 159 (1012)
Q Consensus 95 ~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~--~l~~~~P~L~aw~~r 159 (1012)
..+...+.+.+.|+.||.+|++++|++|++||+||+++++++.++...+. ++...+|+|.+|++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 44677888999999999999999999999999999999999999987754 345789999999986
No 173
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.71 E-value=3.5e-08 Score=93.64 Aligned_cols=66 Identities=26% Similarity=0.510 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhc---ccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCcccccc
Q psy3752 101 EEIRDRLITLAPL---FLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170 (1012)
Q Consensus 101 ~~l~~~L~~Le~~---L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~l 170 (1012)
+.+.+.+..+|.. +++++||+|+ +|+||+++++++.|....+.++ .|+|.+|++++.+||+|++.+
T Consensus 44 ~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~~~---~P~l~~~~~rv~~rPsv~~~~ 112 (114)
T cd03194 44 ADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYGLPL---SPAAQAYVDALLAHPAMQEWI 112 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHCCHHHHHHH
Confidence 3344444444444 4577899999 9999999999998887665543 399999999999999998754
No 174
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.71 E-value=1.6e-08 Score=93.93 Aligned_cols=73 Identities=23% Similarity=0.365 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752 97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
+....++.+.++.+|++|++++|++|+++|+|||++++.+.|+...+. ...+|+|.+|++++++||+|++++.
T Consensus 29 ~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~ 101 (103)
T cd03207 29 MAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFGL--LPERPAFDAYIARITDRPAFQRAAA 101 (103)
T ss_pred hhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcCC--CCCChHHHHHHHHHHcCHHHHHHhc
Confidence 455677899999999999999999999999999999999988765542 4569999999999999999987653
No 175
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.70 E-value=2.6e-08 Score=86.25 Aligned_cols=50 Identities=58% Similarity=1.020 Sum_probs=46.8
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~ 50 (1012)
++|+.+.+++...+++|+++||.|+||+|+++|..++||.+|++||+++|
T Consensus 24 i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 24 VSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 68999999988888999999999999999999999999999999999875
No 176
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.70 E-value=2.2e-08 Score=86.86 Aligned_cols=47 Identities=30% Similarity=0.552 Sum_probs=42.8
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.+++.. +++||+++||.|+||+|++||.+++||.+|++||+
T Consensus 24 l~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 24 LRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 589999998753 56899999999999999999999999999999985
No 177
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.68 E-value=2.9e-08 Score=87.02 Aligned_cols=51 Identities=37% Similarity=0.591 Sum_probs=46.1
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeC-CEeeccHHHHHHHHhhhCC
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVER-DLILYESNIINEYIDERFP 51 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL~~~~p 51 (1012)
++|+.+.++..+ ++++|+++||.|++|+|+++ |..++||.+|++||+++||
T Consensus 23 i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 23 LPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999998865 47899999999999999976 8999999999999999986
No 178
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.65 E-value=4.7e-08 Score=85.38 Aligned_cols=51 Identities=35% Similarity=0.623 Sum_probs=46.4
Q ss_pred CceEEEEecCC---CCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752 1 MDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP 51 (1012)
Q Consensus 1 I~ye~~~Vd~~---~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p 51 (1012)
++|+.+.+++. .++++|++.||.++||+|+++|.+++||.+|++||+++||
T Consensus 23 i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 23 LPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999999875 3678999999999999999999999999999999999885
No 179
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.63 E-value=5.3e-08 Score=85.18 Aligned_cols=50 Identities=36% Similarity=0.623 Sum_probs=45.0
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~ 50 (1012)
++|+.+.+++.+ ..++|.++||.|+||+|+++|.+++||.||++||+++|
T Consensus 24 ~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 24 IPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 589999998765 35789999999999999999999999999999999875
No 180
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.62 E-value=5.8e-08 Score=84.43 Aligned_cols=50 Identities=36% Similarity=0.563 Sum_probs=46.2
Q ss_pred CceEEEEecCCCCCchhhhcCCC-CCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPY-GQVPILVERDLILYESNIINEYIDERF 50 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~-gkVPvL~ddg~~I~ES~aIl~YL~~~~ 50 (1012)
++|+.+.+++..++++|+++||. |+||+|++||.+++||.+|++||+++|
T Consensus 24 l~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 24 VPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 68999999988788999999995 999999999999999999999999875
No 181
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.60 E-value=7.1e-08 Score=85.48 Aligned_cols=51 Identities=29% Similarity=0.693 Sum_probs=46.0
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeC---CEeeccHHHHHHHHhhhCC
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVER---DLILYESNIINEYIDERFP 51 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~dd---g~~I~ES~aIl~YL~~~~p 51 (1012)
++|+.+.+++.. ++++|+++||.|+||+|+++ |.+|+||.+|++||+++|+
T Consensus 24 l~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 24 LPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred CCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 689999998753 56899999999999999987 8999999999999999986
No 182
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=98.59 E-value=7.9e-08 Score=84.07 Aligned_cols=48 Identities=31% Similarity=0.582 Sum_probs=42.3
Q ss_pred CceEEEEecCCC---CCchhhhcCCC-CCccEEEeC-CEeeccHHHHHHHHhh
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPY-GQVPILVER-DLILYESNIINEYIDE 48 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~-gkVPvL~dd-g~~I~ES~aIl~YL~~ 48 (1012)
++|+.+.+++.. ++++|++.||. |+||+|+++ |.+++||.||++||++
T Consensus 24 v~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 24 VEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp --EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred ccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 589999999855 34999999999 999999998 9999999999999985
No 183
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.57 E-value=5.3e-08 Score=84.49 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=43.9
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 49 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~ 49 (1012)
++|+.+.+++..+.++|+++||.|+||+|++||.+++||.||++||+++
T Consensus 25 i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 25 ISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 5899999987556678999999999999999999999999999999863
No 184
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.56 E-value=2e-07 Score=86.75 Aligned_cols=98 Identities=21% Similarity=0.264 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc--cccHHHHHHHHHHHHHHHHHHHhcccC--CCcccCCCcCHHHHHHHHHhh
Q psy3752 62 MRARARLMLLNFEKEIFIHLYMLENERN--KTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDVVIAPLLW 137 (1012)
Q Consensus 62 era~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~Le~~L~~--~~fL~Gd~~TlADi~l~~~L~ 137 (1012)
++++++++...+. .+...+........ ...........+.+.+.+..||++|.+ ++|++|+++|+||+++++++.
T Consensus 2 e~~~v~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIA-DLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 4677888766543 33333332222111 112333455677888999999999987 899999999999999999998
Q ss_pred hhhhccccc-cCCCchhHHHHHHH
Q psy3752 138 RLDYYGINL-SKSASPLIKYAERI 160 (1012)
Q Consensus 138 ~l~~~~~~l-~~~~P~L~aw~~ri 160 (1012)
++...+... ...||+|.+|++++
T Consensus 81 ~~~~~~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYLDPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHhhCchhhHHhChhHHHHHHhC
Confidence 887665443 56799999999875
No 185
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.55 E-value=5.2e-08 Score=89.95 Aligned_cols=64 Identities=23% Similarity=0.409 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhcccCCC--cccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhc
Q psy3752 97 KRAREEIRDRLITLAPLFLKNK--YMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFS 162 (1012)
Q Consensus 97 ~~~~~~l~~~L~~Le~~L~~~~--fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~ 162 (1012)
+....++.+.|..++++|+.++ ||+|++||+||+++|+.|..+... ++.+.+|+|.+|++||++
T Consensus 34 ~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~--~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 34 DFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA--DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC--HHTTTCHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 4566788999999999998776 999999999999999999666533 333679999999999974
No 186
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.55 E-value=1.1e-07 Score=82.65 Aligned_cols=48 Identities=27% Similarity=0.643 Sum_probs=43.4
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDE 48 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~ 48 (1012)
++|+.+.+++.+ ..++|+++||.|+||+|+++|.+|+||.||++||++
T Consensus 24 i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 24 LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 589999998754 458999999999999999999999999999999975
No 187
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.52 E-value=1.8e-07 Score=90.15 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHHHHhc
Q psy3752 97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFS 162 (1012)
Q Consensus 97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~ri~~ 162 (1012)
+.....+.+.|+.+|++|++++|++|+++|+||+++++.+.+.... +.++.+.+|+|.+|++||.+
T Consensus 57 ~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 57 EAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhc
Confidence 4566788999999999999999999999999999999999888764 55555679999999999976
No 188
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.50 E-value=1.5e-07 Score=82.08 Aligned_cols=48 Identities=33% Similarity=0.536 Sum_probs=43.3
Q ss_pred CceEEEEecCC--CCCchhhhcCCCCCccEEEe-CCEeeccHHHHHHHHhh
Q psy3752 1 MDFEIRDIDLF--NKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDE 48 (1012)
Q Consensus 1 I~ye~~~Vd~~--~~~~~~~~inP~gkVPvL~d-dg~~I~ES~aIl~YL~~ 48 (1012)
++|+.+.+++. .++++|+++||.|++|+|++ +|.+|+||.||++||++
T Consensus 24 i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 24 LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred CceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 58999999986 36789999999999999996 58999999999999986
No 189
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.50 E-value=1.9e-07 Score=81.62 Aligned_cols=49 Identities=39% Similarity=0.740 Sum_probs=43.8
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 49 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~ 49 (1012)
++|+.+.+++.. .+++|.++||.|+||+|+++|..++||.||++||+++
T Consensus 25 i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 25 VDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 578998888753 5689999999999999999999999999999999864
No 190
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=98.50 E-value=1.7e-07 Score=83.34 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=41.1
Q ss_pred CceEEEEecCCCC----Cchhhhc-----CCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752 1 MDFEIRDIDLFNK----PDNIFRM-----NPYGQVPILVERDLILYESNIINEYIDERF 50 (1012)
Q Consensus 1 I~ye~~~Vd~~~~----~~~~~~i-----nP~gkVPvL~ddg~~I~ES~aIl~YL~~~~ 50 (1012)
++|+.+.+++.+. .++|.+. +|+|+||+|++||.+|+||.||++||+++|
T Consensus 24 i~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~~ 82 (82)
T cd03075 24 EKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARKH 82 (82)
T ss_pred CCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhcC
Confidence 6899999998652 2445432 299999999999999999999999999875
No 191
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.48 E-value=2e-07 Score=80.37 Aligned_cols=46 Identities=33% Similarity=0.569 Sum_probs=42.7
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeC-CEeeccHHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVER-DLILYESNIINEYI 46 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL 46 (1012)
++|+.+.+++..++++|+++||.|+||+|+++ |..++||.+|++|+
T Consensus 24 l~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 24 ITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 58999999998888999999999999999974 99999999999997
No 192
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.47 E-value=2.3e-07 Score=84.99 Aligned_cols=68 Identities=34% Similarity=0.536 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccc--ccCCCchhHHHHHHH
Q psy3752 93 IKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN--LSKSASPLIKYAERI 160 (1012)
Q Consensus 93 ~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~--l~~~~P~L~aw~~ri 160 (1012)
....+...+.+.+.++.||++|++++|++|+++|+||+++++++.++...+.. +.+.+|++.+|+++|
T Consensus 31 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 31 EAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 34456677889999999999999999999999999999999999998776554 246699999999875
No 193
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.45 E-value=2.7e-07 Score=79.33 Aligned_cols=49 Identities=37% Similarity=0.707 Sum_probs=40.9
Q ss_pred CceEEEEecC----CCCCchhhhcCCCCCccEEEe-CCEeeccHHHHHHHHhhh
Q psy3752 1 MDFEIRDIDL----FNKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDER 49 (1012)
Q Consensus 1 I~ye~~~Vd~----~~~~~~~~~inP~gkVPvL~d-dg~~I~ES~aIl~YL~~~ 49 (1012)
|+|+...++. ...+++|.++||.|+||+|++ +|.+++||.+|++||+++
T Consensus 17 l~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 17 LPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp GTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 5788888844 235589999999999999997 789999999999999874
No 194
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.45 E-value=2.8e-07 Score=79.94 Aligned_cols=47 Identities=30% Similarity=0.635 Sum_probs=42.6
Q ss_pred CceEEEEecCCC--CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFN--KPDNIFRMNPYGQVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~--~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.+++.. ..++|+++||.|++|+|+++|.+++||.+|++||+
T Consensus 25 l~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 25 IPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 589999998765 45899999999999999999999999999999984
No 195
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.43 E-value=3.1e-07 Score=79.59 Aligned_cols=47 Identities=34% Similarity=0.581 Sum_probs=41.7
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.++... ..++|+++||.|+||+|+++|..|+||.||++||+
T Consensus 24 l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 24 LPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 578988887643 46889999999999999999999999999999985
No 196
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.41 E-value=1e-06 Score=79.41 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccc------ccCCCchhHHHHHHHh
Q psy3752 98 RAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN------LSKSASPLIKYAERIF 161 (1012)
Q Consensus 98 ~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~------l~~~~P~L~aw~~ri~ 161 (1012)
....++.+.++.+|+.|++++|++|+++|+||+++++.+.++...+.. ..+.+|+|.+|++|+.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 445778899999999999999999999999999999999877543221 1246999999999974
No 197
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.40 E-value=3.4e-07 Score=80.34 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=42.9
Q ss_pred CceEEEEecCCC-CCchhhhcCCCCCccEEEe--CCEeeccHHHHHHHHhhhC
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVE--RDLILYESNIINEYIDERF 50 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~d--dg~~I~ES~aIl~YL~~~~ 50 (1012)
|||+.+.++... ..++|++.||.|+||+|++ +|.+++||.+|++||+++|
T Consensus 25 i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 25 LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 689998886543 4578999999999999997 4799999999999999875
No 198
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.38 E-value=5.1e-07 Score=78.04 Aligned_cols=47 Identities=30% Similarity=0.592 Sum_probs=42.4
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.+++.. .+++|+++||.|++|+|+++|.+++||.+|++||+
T Consensus 24 ~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 24 IPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 589999998753 56899999999999999999999999999999984
No 199
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.38 E-value=3.7e-07 Score=79.07 Aligned_cols=47 Identities=30% Similarity=0.661 Sum_probs=42.9
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.++...++++|++.||.|+||+|+ +||..++||.||++||+
T Consensus 26 i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 26 DDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 579999998877789999999999999998 58899999999999985
No 200
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.38 E-value=5.1e-07 Score=78.04 Aligned_cols=47 Identities=36% Similarity=0.564 Sum_probs=42.6
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.+++.+ ..++|+++||.|++|+|+++|.+++||.||++||+
T Consensus 24 i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 24 LDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 689999998753 56899999999999999999999999999999985
No 201
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.37 E-value=3.1e-07 Score=79.33 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=42.0
Q ss_pred CceEEEEecCCCC-CchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy3752 1 MDFEIRDIDLFNK-PDNIFRMNPYGQVPILVERDLILYESNIINEYIDE 48 (1012)
Q Consensus 1 I~ye~~~Vd~~~~-~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~ 48 (1012)
+||+.+.+++... .++|.++||.|+||+|+++|.+++||.||++||++
T Consensus 24 i~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 24 VEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 6899999987653 34589999999999999999999999999999974
No 202
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.35 E-value=5.4e-07 Score=80.47 Aligned_cols=50 Identities=20% Similarity=0.539 Sum_probs=43.2
Q ss_pred CceEEEEecCCCCC---chhhhcCCCCCccEEEeC-CEeeccHHHHHHHHhhhCC
Q psy3752 1 MDFEIRDIDLFNKP---DNIFRMNPYGQVPILVER-DLILYESNIINEYIDERFP 51 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~---~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL~~~~p 51 (1012)
++|+.+.+++.... +++ ++||.|+||+|+++ |.+++||.+|++||+++||
T Consensus 31 i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 31 LEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 68999999876532 345 88999999999998 8999999999999999986
No 203
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=98.28 E-value=1.2e-06 Score=77.28 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=39.9
Q ss_pred CceEEEEecCCCCCchhhhcC-----CCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMN-----PYGQVPILVERDLILYESNIINEYIDERFP 51 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~in-----P~gkVPvL~ddg~~I~ES~aIl~YL~~~~p 51 (1012)
++|+.+.++.. ++|.+.| |+|+||+|++||.+|+||.||++||+++|+
T Consensus 25 i~~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 25 VEFEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CCcEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 58899988753 3444444 599999999999999999999999999986
No 204
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.27 E-value=1e-06 Score=79.59 Aligned_cols=47 Identities=43% Similarity=0.687 Sum_probs=43.1
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeC-CEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVER-DLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL~ 47 (1012)
++|+.+.++...++++|.+.||.++||+|+++ |.+++||.||++||+
T Consensus 42 l~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 42 IPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 58999999987777889999999999999976 899999999999985
No 205
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.20 E-value=1.8e-06 Score=74.70 Aligned_cols=47 Identities=28% Similarity=0.547 Sum_probs=41.4
Q ss_pred CceEEEEecCCC---CCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILV-ERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.+++.. ..++|.++||.|+||+|+ +||..++||.+|++||+
T Consensus 24 l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 24 IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 589999998754 467899999999999998 57899999999999985
No 206
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.15 E-value=9.4e-06 Score=74.70 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=56.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc--cccccCCCchhHHHHHHH
Q psy3752 89 NKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY--GINLSKSASPLIKYAERI 160 (1012)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~--~~~l~~~~P~L~aw~~ri 160 (1012)
........+.....+.+.|..+|++|++++| +++|+|||++++.+.|.... +.++...||+|.+|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 28 EKRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 3344455677788999999999999998898 89999999999999888643 333346799999999985
No 207
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.14 E-value=3.2e-06 Score=73.70 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=38.2
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP 51 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p 51 (1012)
+||+.+.++. .+.||.|+||+|+++|.+++||.+|++||+++|+
T Consensus 32 i~~~~~~~~~-------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 32 IPYENKFGGL-------AKRSPKGKLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred CCcEEeecCc-------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 5677777654 3689999999999999999999999999999874
No 208
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.2e-05 Score=75.55 Aligned_cols=141 Identities=24% Similarity=0.247 Sum_probs=89.0
Q ss_pred CCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----------
Q psy3752 22 PYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSS-DPLMRARARLMLLNFEKEIFIHLYMLENER----------- 88 (1012)
Q Consensus 22 P~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~p~-~~~era~v~~~~~~~~~~~~~~~~~~~~~~----------- 88 (1012)
-..+||+|+ +||..+.||..|.+|+++.++.+-|-.. .|.-++..+....+.+..+++.+.....+.
T Consensus 44 G~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~ 123 (215)
T COG2999 44 GQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTGKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFT 123 (215)
T ss_pred cccccceEEccccccchhhhHHHHHHHHhcCchhhccCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHH
Confidence 467899999 7899999999999999999875434432 343333333332223333333332221111
Q ss_pred --ccccH-------HHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHH
Q psy3752 89 --NKTSI-------KGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAE 158 (1012)
Q Consensus 89 --~~~~~-------~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~ 158 (1012)
.+... ........++...|+.++..+.+..=+- ..++.-|+.+||.|+++... |..|+ .++..|+.
T Consensus 124 ~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~Li~~~s~~n-~~l~~ddi~vFplLRnlt~v~gi~wp---s~v~dy~~ 199 (215)
T COG2999 124 DKKEASEGSFESLLNHTAQYLKRIQADLRALDKLIVGPSAVN-GELSEDDILVFPLLRNLTLVAGIQWP---SRVADYRD 199 (215)
T ss_pred hhhhhccccHHHHHhchHHHHHHHHHHHHHHHHHhcCcchhc-cccchhhhhhhHHhccceecccCCCc---HHHHHHHH
Confidence 11100 1113456678888888888776544233 36999999999999987644 55554 36999999
Q ss_pred HHhcCCcc
Q psy3752 159 RIFSRPSY 166 (1012)
Q Consensus 159 ri~~rp~~ 166 (1012)
+|.+...+
T Consensus 200 ~msektqV 207 (215)
T COG2999 200 NMSEKTQV 207 (215)
T ss_pred HHHHhhCc
Confidence 99886654
No 209
>KOG3029|consensus
Probab=98.06 E-value=2e-05 Score=82.07 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcc-cCCCcccCCCcCHHHHHHHHHhhhhhhcc--ccccCCCchhHHHHHHHhc
Q psy3752 101 EEIRDRLITLAPLF-LKNKYMLGDEFSMLDVVIAPLLWRLDYYG--INLSKSASPLIKYAERIFS 162 (1012)
Q Consensus 101 ~~l~~~L~~Le~~L-~~~~fL~Gd~~TlADi~l~~~L~~l~~~~--~~l~~~~P~L~aw~~ri~~ 162 (1012)
..+.+.++.+-..| .+++||.|++|++||+++|+.|..++... -+... ..++..|+-+|++
T Consensus 291 e~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl~sm~gc~afkd~~q-~t~I~eW~~rmea 354 (370)
T KOG3029|consen 291 EHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVLRSMEGCQAFKDCLQ-NTSIGEWYYRMEA 354 (370)
T ss_pred HHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhhhHhhhhhHHHHHHh-cchHHHHHHHHHH
Confidence 34444555444455 46899999999999999999998776542 12332 4789999999876
No 210
>KOG3027|consensus
Probab=98.04 E-value=4.3e-05 Score=76.31 Aligned_cols=141 Identities=19% Similarity=0.200 Sum_probs=96.8
Q ss_pred cCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH-----H--------HHhh
Q psy3752 20 MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS-SDPLMRARARLMLLNFEKEIFIH-----L--------YMLE 85 (1012)
Q Consensus 20 inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p-~~~~era~v~~~~~~~~~~~~~~-----~--------~~~~ 85 (1012)
++|.|+||.|..|.++++|=.+|..+...+-- .|-. -+..+++.++..++.++..+... + +...
T Consensus 62 mSP~G~vPllr~g~~~~aef~pIV~fVeak~~--~l~s~lsE~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~ 139 (257)
T KOG3027|consen 62 MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGV--TLTSWLSEDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTAL 139 (257)
T ss_pred cCCCCCCceeeecchhhhhhhHHHHHHHHhcc--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhh
Confidence 48999999999999999999999999998852 2322 24455666665544443322100 0 0000
Q ss_pred hcc-------------------------ccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhh
Q psy3752 86 NER-------------------------NKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 140 (1012)
Q Consensus 86 ~~~-------------------------~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~ 140 (1012)
..+ ...+....+...+++...+++|+.+|+.++||.|++||-+|..+|+.+..+.
T Consensus 140 R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytil 219 (257)
T KOG3027|consen 140 RYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTIL 219 (257)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhh
Confidence 000 0111223355677888999999999999999999999999999999987765
Q ss_pred hcccc------ccCCCchhHHHHHHHhc
Q psy3752 141 YYGIN------LSKSASPLIKYAERIFS 162 (1012)
Q Consensus 141 ~~~~~------l~~~~P~L~aw~~ri~~ 162 (1012)
...++ ..+.||+|.++..|+.+
T Consensus 220 Tt~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 220 TTRLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred hhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 43322 23569999999999875
No 211
>KOG2436|consensus
Probab=97.99 E-value=2.9e-05 Score=88.00 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=102.3
Q ss_pred cchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhh---ccccc----CCCcchHHHHHHH---HHHHHHHHHHHHHHhcC
Q psy3752 612 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKIQ----NIDRSTADYMGML---ATIINSLALFDILNKSG 681 (1012)
Q Consensus 612 d~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~---~~~~~----~~~~~~~~~~~~~---~~~~~~~~l~~~l~~~g 681 (1012)
.....+.++..++-+...|..+|||||+|....++ .+... ++.....+.++++ .+++++.-+...|.++|
T Consensus 107 ~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~nL~~~g 186 (520)
T KOG2436|consen 107 STSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVINLSQLG 186 (520)
T ss_pred ccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHHHHHHHhh
Confidence 56678889999999999999999999999443332 22221 1222223333333 44555555777889998
Q ss_pred CceeEeehhchh--------------------hhhhhcchHHHHHHhhCCCEEEEcC----cCC-CCCCccHHHHHHHHH
Q psy3752 682 IISHVMSAISIE--------------------KFLESYIPLNAIKYLEEGKVVIFAG----GIG-NPFFTTDTTAALRAA 736 (1012)
Q Consensus 682 i~a~~l~~~~~~--------------------~~~~~~~~~~l~~~L~~g~VPVi~G----~~g-~~~~s~D~~Aa~lA~ 736 (1012)
-.+++.++.... .-+..++.+.+..+++.|.+|+++. .-| .-++.+|.+|..+|.
T Consensus 187 ~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~ 266 (520)
T KOG2436|consen 187 TRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELAL 266 (520)
T ss_pred ceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHh
Confidence 888776655221 0155678899999999999999875 112 224669999999999
Q ss_pred hcCCceEEeeeccccccccCCc
Q psy3752 737 EIKAEIILKATKVDGIYNSDPN 758 (1012)
Q Consensus 737 ~l~Ad~liilTDVdGVy~~dP~ 758 (1012)
.|+|+.+++++|+.-+...+|.
T Consensus 267 ~L~~~kli~l~d~g~~l~e~ge 288 (520)
T KOG2436|consen 267 ALGPDKLILLMDKGRILKENGE 288 (520)
T ss_pred ccCcceeEEecccccccccCcc
Confidence 9999999999998334455554
No 212
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=97.98 E-value=7.3e-06 Score=79.19 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-----ccc-ccCCCchhHHHHHHHh
Q psy3752 97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-----GIN-LSKSASPLIKYAERIF 161 (1012)
Q Consensus 97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-----~~~-l~~~~P~L~aw~~ri~ 161 (1012)
++......+.|++|++.|++++||+|++||.+|+++|+++.++... .+. ....||+|.+|++||.
T Consensus 56 ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 56 DQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 5566778899999999999999999999999999999998776533 111 2356899999999973
No 213
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.94 E-value=1.2e-05 Score=69.11 Aligned_cols=47 Identities=30% Similarity=0.241 Sum_probs=39.0
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeC-CEeeccHHHHHHHHhh
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVER-DLILYESNIINEYIDE 48 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL~~ 48 (1012)
++|+.+.++... ...+.+.||.++||+|+++ |.+++||.+|++||++
T Consensus 24 l~~~~~~~~~~~-~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 24 IPVEQIILQNDD-EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CCeEEEECCCCc-hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 588988887543 2345678999999999975 8999999999999974
No 214
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=97.94 E-value=1.5e-05 Score=78.07 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccc------ccCCCchhHHHHHHHhc
Q psy3752 96 YKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN------LSKSASPLIKYAERIFS 162 (1012)
Q Consensus 96 ~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~------l~~~~P~L~aw~~ri~~ 162 (1012)
.++...+..+.|+.|++.|++++||+|+++|.+|+++++++..+....++ ....||+|.+|++||.+
T Consensus 62 ~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 62 EAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 35566778889999999999999999999999999999988766433332 13569999999999975
No 215
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=97.93 E-value=3.2e-05 Score=70.97 Aligned_cols=109 Identities=26% Similarity=0.291 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccccHHHHHHHHHHHHHHHHHHHhccc-CCCcccCCCcCHHHHHHHH
Q psy3752 59 DPLMRARARLMLLNFEKEIFIHLYMLENE---RNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAP 134 (1012)
Q Consensus 59 ~~~era~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~Le~~L~-~~~fL~Gd~~TlADi~l~~ 134 (1012)
|..+|++.+++..++.+++++---..+.. .........+.....+.+.+...+..|. +++||+| ++|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFG-ewsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFG-EWSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTS-S--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCccc-cchHHHHHHHH
Confidence 46789999998888877664432111100 0111112224555667777777887776 4689999 49999999999
Q ss_pred HhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752 135 LLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171 (1012)
Q Consensus 135 ~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt 171 (1012)
++.++...|.+++ +++..|.++..+||++++.+.
T Consensus 80 ml~Rl~~~gd~vP---~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 80 MLNRLVTYGDPVP---ERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHTTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHHCCHHHHHHHH
Confidence 9999988887665 479999999999999987665
No 216
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=97.88 E-value=1.2e-05 Score=70.36 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=39.3
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeC----CEeeccHHHHHHHHhhhC
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVER----DLILYESNIINEYIDERF 50 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~dd----g~~I~ES~aIl~YL~~~~ 50 (1012)
|+|+.+.+++...++ .+.||.++||+|+++ |.+|+||.+|++||+++.
T Consensus 25 i~y~~~~~~~~~~~~--~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 25 IPYEVVEVNPVSRKE--IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CceEEEECCchhHHH--HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 588998887654333 367999999999965 799999999999999874
No 217
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.83 E-value=2.7e-05 Score=67.23 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=37.0
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 49 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~ 49 (1012)
|||+.+.++... +||.|+||+|+++|..++||.+|++||+++
T Consensus 31 i~~~~~~~~~~~-------~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 31 IPYEVVFSSNPW-------RSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CceEEEecCCcc-------cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 688888887532 799999999999999999999999999874
No 218
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=97.81 E-value=3.7e-05 Score=64.99 Aligned_cols=47 Identities=34% Similarity=0.620 Sum_probs=41.1
Q ss_pred CceEEEEecCCCCCc-hhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFNKPD-NIFRMNPYGQVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~-~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.++...... ++.+.+|.+++|+|+++|.+++||.+|++||+
T Consensus 24 i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 24 LPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 578888888765443 58899999999999999999999999999985
No 219
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=97.79 E-value=3.4e-05 Score=75.45 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcc-cCCCcccCCCcCHHHHHHHHHhhhhhhc-cc-cccCCCchhHHHHHHHhc
Q psy3752 101 EEIRDRLITLAPLF-LKNKYMLGDEFSMLDVVIAPLLWRLDYY-GI-NLSKSASPLIKYAERIFS 162 (1012)
Q Consensus 101 ~~l~~~L~~Le~~L-~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~-~l~~~~P~L~aw~~ri~~ 162 (1012)
..+...++.+-+.+ .+++|++|++||+|||++++.+..+... ++ ++. .||++.+|++||.+
T Consensus 82 ~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~-~~p~I~~W~eRm~~ 145 (149)
T cd03197 82 EWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMV-EETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchh-hCcCHHHHHHHHHH
Confidence 44444554333333 4578999999999999999999888766 56 555 59999999999976
No 220
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=97.71 E-value=5.2e-05 Score=65.35 Aligned_cols=43 Identities=26% Similarity=0.469 Sum_probs=33.7
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 49 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~ 49 (1012)
+||+.+. +.. .+ ..+|.|+||+|++||.+|+||.||+.||+++
T Consensus 32 lpye~~~--~~~--~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 32 LPFNVRC--RAN--AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCcEEEe--cCC--cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 5777773 221 11 2678899999999999999999999999864
No 221
>KOG3028|consensus
Probab=97.46 E-value=0.0023 Score=69.02 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=90.8
Q ss_pred cCCCCCccEEEe-CCEeeccHHHHHHHHhhhCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------
Q psy3752 20 MNPYGQVPILVE-RDLILYESNIINEYIDERFPYPQLMSS-DPLMRARARLMLLNFEKEIFIHLYMLENER--------- 88 (1012)
Q Consensus 20 inP~gkVPvL~d-dg~~I~ES~aIl~YL~~~~p~~~L~p~-~~~era~v~~~~~~~~~~~~~~~~~~~~~~--------- 88 (1012)
..|.|++|+|+. +|..++.-.-|..||...-.+-.+-+. ...+++....|+..+...+.+.+.......
T Consensus 44 ~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tk 123 (313)
T KOG3028|consen 44 RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTK 123 (313)
T ss_pred CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhH
Confidence 367999999996 569999999999999873211112221 145555666655444433322211110000
Q ss_pred ------------------c------------cccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhh
Q psy3752 89 ------------------N------------KTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR 138 (1012)
Q Consensus 89 ------------------~------------~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~ 138 (1012)
. ....+..++......+++..|.+.|+.++|++||++|--|..++..+..
T Consensus 124 k~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~ 203 (313)
T KOG3028|consen 124 KWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAI 203 (313)
T ss_pred HHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHH
Confidence 0 0001112344556677888999999999999999999999999999887
Q ss_pred hhhccccc------cCCCchhHHHHHHHhc
Q psy3752 139 LDYYGINL------SKSASPLIKYAERIFS 162 (1012)
Q Consensus 139 l~~~~~~l------~~~~P~L~aw~~ri~~ 162 (1012)
+....++. ...+|||.+|.+++..
T Consensus 204 ~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 204 LLQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 54443321 1237999999999876
No 222
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=97.44 E-value=0.00013 Score=54.00 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=30.0
Q ss_pred hhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHH
Q psy3752 392 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEIL 426 (1012)
Q Consensus 392 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l 426 (1012)
..+++|+.. |++..+|++||..++||++.|++||
T Consensus 4 ~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEM-GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 356778887 9999999999999999999999998
No 223
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.88 E-value=0.036 Score=61.80 Aligned_cols=195 Identities=18% Similarity=0.132 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCccccC-hHHHHHHHHHHHHHHhhh
Q psy3752 210 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTN-FKTIKTSIQRLKEMDLFI 288 (1012)
Q Consensus 210 l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN-~~~~~~~~~~~~~~~~~~ 288 (1012)
+......+.++...+.....++|+|.|+|...-+.-.+..+++...-+-+..-++.|.+.. +..+..++.
T Consensus 41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e--------- 111 (299)
T PRK05441 41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVE--------- 111 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhccc---------
Confidence 5566788888888888888999999999999877655555544433322222234443321 111111110
Q ss_pred ccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCC----chhHHHHHHhcCCCeEEEecCCCCC--Cc
Q psy3752 289 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY----HKGAVSEAIKLNIPIIGVVDTNHSP--DG 362 (1012)
Q Consensus 289 ~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~----~~~ai~Ea~~l~iP~i~l~Dt~~~~--~~ 362 (1012)
..++.. + ...+ .+... + -..-|++|++...- -..+++.|+..|.|||+|++...+| ..
T Consensus 112 ---~~ed~~--~--~~~~---~l~~~-----~-l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~ 175 (299)
T PRK05441 112 ---GAEDDA--E--LGAA---DLKAI-----N-LTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKE 175 (299)
T ss_pred ---ccCChH--H--HHHH---HHHhc-----C-CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHh
Confidence 000000 0 0000 01100 0 13568888886543 3468889999999999998643322 23
Q ss_pred ceeeccCCC-----------CchhhHHHHhhhhhhhhhh--hh-----h------hhhhh--------cccccChHHHHH
Q psy3752 363 INYVIPGND-----------DSAKSIALYTKGIVDAFLD--AK-----T------VGELR--------SKTLAPIMECKK 410 (1012)
Q Consensus 363 i~~~IP~N~-----------~s~~si~l~~~~l~~ai~~--g~-----~------v~~lr--------~~t~~~~~~~k~ 410 (1012)
.|++|.... .+..+..+++++|+..+.. |+ | ..+|| +-||.+-.+|.+
T Consensus 176 aD~~I~~~~g~E~~~~st~~~s~taqk~iLn~lst~~~~~~gkv~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~ 255 (299)
T PRK05441 176 ADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMISTGVMIRLGKVYGNLMVDVKATNEKLVDRAVRIVMEATGVSREEAEA 255 (299)
T ss_pred CCEEEEcCCCCccccccccccchhHHHHHHHHHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 667664331 2445677888888775422 22 1 13343 348999999999
Q ss_pred HHHHhcCCHHHHHHHHHHh
Q psy3752 411 ALIEANGKLSKAEEILRIK 429 (1012)
Q Consensus 411 al~~~~~d~~~a~~~l~~~ 429 (1012)
+|.+++|++..|+-.+...
T Consensus 256 ~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 256 ALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHhCCCcHHHHHHHHhC
Confidence 9999999999999877653
No 224
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.59 E-value=0.086 Score=58.66 Aligned_cols=193 Identities=18% Similarity=0.154 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCc-cccChHHHHHHHHHHHHHHhhhc
Q psy3752 211 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGG-LLTNFKTIKTSIQRLKEMDLFIT 289 (1012)
Q Consensus 211 ~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G-~lTN~~~~~~~~~~~~~~~~~~~ 289 (1012)
......|..|...+....+++|+|.++|...-+.-.+..++....-|-+...-+.| +...+..+..++.
T Consensus 38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~---------- 107 (296)
T PRK12570 38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVE---------- 107 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhccc----------
Confidence 44557788888888888899999999999887654445444433333222222222 2223322211111
Q ss_pred cCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCch----hHHHHHHhcCCCeEEEecCCCCC--Ccc
Q psy3752 290 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DGI 363 (1012)
Q Consensus 290 ~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~----~ai~Ea~~l~iP~i~l~Dt~~~~--~~i 363 (1012)
+.. .. .+ .+.++ +.. . .+ ..-|++|++...-+. .+++.|+..|.|||+|+.....| +..
T Consensus 108 -~~e-d~--~~--~~~~~---l~a--~---~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~a 172 (296)
T PRK12570 108 -GAE-DD--PE--LGAQD---LKA--I---GL-TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIA 172 (296)
T ss_pred -ccC-Cc--HH--HHHHH---HHH--c---CC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence 000 00 00 00000 110 0 01 356999988766544 67899999999999998654333 346
Q ss_pred eeeccC---CC--------CchhhHHHHhhhhhhhhhh--hh-----hh------hhhhcc--------cccChHHHHHH
Q psy3752 364 NYVIPG---ND--------DSAKSIALYTKGIVDAFLD--AK-----TV------GELRSK--------TLAPIMECKKA 411 (1012)
Q Consensus 364 ~~~IP~---N~--------~s~~si~l~~~~l~~ai~~--g~-----~v------~~lr~~--------t~~~~~~~k~a 411 (1012)
||+|.. .. .+.-+..+++++|...+.. |+ || .+||.+ ||.+..+|.++
T Consensus 173 D~~I~~~~g~E~~~~st~~~s~taqk~vLd~L~t~~~~r~Gk~~~n~mvd~~~~n~kl~~Ra~~i~~~~~~~~~~~a~~~ 252 (296)
T PRK12570 173 DIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRLGKSYQNLMVDVKATNEKLVARAVRIVMQATGCSEDEAKEL 252 (296)
T ss_pred CEEEeeCcCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhcCeEEEeecchHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 777742 21 2456778888888776532 22 22 345443 89999999999
Q ss_pred HHHhcCCHHHHHHHHHH
Q psy3752 412 LIEANGKLSKAEEILRI 428 (1012)
Q Consensus 412 l~~~~~d~~~a~~~l~~ 428 (1012)
|.+++|++..|+-.+..
T Consensus 253 l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 253 LKESDNDVKLAILMILT 269 (296)
T ss_pred HHHhCCccHHHHHHHHh
Confidence 99999999999886655
No 225
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=96.23 E-value=0.052 Score=59.19 Aligned_cols=189 Identities=20% Similarity=0.152 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCcccc-ChHHHHHHHHHHHHHHhhh
Q psy3752 210 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT-NFKTIKTSIQRLKEMDLFI 288 (1012)
Q Consensus 210 l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lT-N~~~~~~~~~~~~~~~~~~ 288 (1012)
+.+....+.+|+..+....+++|+|.++|...-+.-.+..+++...-|-....++.|.+. .+..+...+.. .+
T Consensus 28 v~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~------~e 101 (257)
T cd05007 28 VEAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEG------AE 101 (257)
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccc------cC
Confidence 344557788888888888899999999999987765554444444322222223444332 22222111110 00
Q ss_pred ccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCC----CchhHHHHHHhcCCCeEEEecCCCCCC--c
Q psy3752 289 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSPD--G 362 (1012)
Q Consensus 289 ~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~----~~~~ai~Ea~~l~iP~i~l~Dt~~~~~--~ 362 (1012)
.+. +. . .+.+.. ..+ ..-|++|++... .-..+++.|++.|.|||+|+....+|- .
T Consensus 102 dd~--------~~--~---~~~l~a-----~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~ 162 (257)
T cd05007 102 DDE--------EA--G---AADLQA-----INL-TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQL 162 (257)
T ss_pred ChH--------HH--H---HHHHHH-----cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHh
Confidence 000 00 0 000111 011 366888888654 335678899999999999986443331 2
Q ss_pred ceeeccCCC-----------CchhhHHHHhhhhhhhhhh--hh-----hh------hhhhc--------ccccChHHHHH
Q psy3752 363 INYVIPGND-----------DSAKSIALYTKGIVDAFLD--AK-----TV------GELRS--------KTLAPIMECKK 410 (1012)
Q Consensus 363 i~~~IP~N~-----------~s~~si~l~~~~l~~ai~~--g~-----~v------~~lr~--------~t~~~~~~~k~ 410 (1012)
.|++|.... .+.-+..+++++|...+.. |+ |+ .+||. -||.+..+|.+
T Consensus 163 aD~~I~~~~g~E~~~~st~~~s~~aqk~vLn~L~t~~~~~~g~v~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~ 242 (257)
T cd05007 163 ADIAIALITGPEVVAGSTRLKAGTAQKLALNMLSTAVMIRLGKVYGNLMVDVRATNEKLRERAIRIVMEATGVSRDEAEA 242 (257)
T ss_pred CCEEEEcCCCCccccCccccccHHHHHHHHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 566654331 2445677888888765422 22 22 33433 47899999999
Q ss_pred HHHHhcCCHHHHH
Q psy3752 411 ALIEANGKLSKAE 423 (1012)
Q Consensus 411 al~~~~~d~~~a~ 423 (1012)
+|.+++|++..|+
T Consensus 243 ~l~~~~~~~k~a~ 255 (257)
T cd05007 243 ALEQAGGDVKTAI 255 (257)
T ss_pred HHHHhCCCceeee
Confidence 9999999987765
No 226
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=95.84 E-value=0.38 Score=53.44 Aligned_cols=192 Identities=15% Similarity=0.099 Sum_probs=111.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHc---CCCe--ecCcccCccccChHHHHHHHHHHHH
Q psy3752 209 NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA---GMPF--IDQRWLGGLLTNFKTIKTSIQRLKE 283 (1012)
Q Consensus 209 ~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~---~~~~--v~~rw~~G~lTN~~~~~~~~~~~~~ 283 (1012)
-+...+..+.+|...+....+++|+|.|+|...-+.=.+..+++.. |..+ +.+-..|| +..+.....-+
T Consensus 35 av~~~l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg----~~a~~~~~e~~-- 108 (291)
T TIGR00274 35 AIESVLPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGG----ECAILHAVEGA-- 108 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCC----hHHHhccchhh--
Confidence 3455677788888888877789999999998876543334433222 3211 11111222 11111011100
Q ss_pred HHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCC-C
Q psy3752 284 MDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTN-H 358 (1012)
Q Consensus 284 ~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~-~ 358 (1012)
++.+.. -..-+.. .. -+.-|++|++...-+ ..+++.|++.|.|||+|+... +
T Consensus 109 ----------Ed~~~~-------~~~dl~~-----~~-l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 109 ----------EDSTEA-------GANDLQN-----IH-LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred ----------hcchHH-------HHHHHHh-----cC-CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 000000 0000111 01 235688888875533 357789999999999997532 2
Q ss_pred C-CCcceeeccCC-----------CCchhhHHHHhhhhhhhh--hhhh-----hh------hhhhc--------ccccCh
Q psy3752 359 S-PDGINYVIPGN-----------DDSAKSIALYTKGIVDAF--LDAK-----TV------GELRS--------KTLAPI 405 (1012)
Q Consensus 359 ~-~~~i~~~IP~N-----------~~s~~si~l~~~~l~~ai--~~g~-----~v------~~lr~--------~t~~~~ 405 (1012)
. .+..|++|... -.|.-+..+++++|+..+ +.|+ || .+||. -||.+.
T Consensus 166 ~La~~aD~~I~~~~g~E~~~~st~~~s~~aqk~iLd~L~t~~~~~~gk~~~n~mvd~~~~N~kl~~Ra~~i~~~~~~~~~ 245 (291)
T TIGR00274 166 AASEIADIAIETIVGPEILTGSSRLKAGTAQKMVLNMLSTASMIKLGKVYENLMVDVQASNEKLKARAVRIVRQATDCNK 245 (291)
T ss_pred hhHHhCCEEEecCCCCccccccchhhHHHHHHHHHHHHHHHHHHhcchhhcCeEEeeecccHHHHHHHHHHHHHHhCcCH
Confidence 2 23466666542 134566677888887755 3333 22 34443 489999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752 406 MECKKALIEANGKLSKAEEILRIK 429 (1012)
Q Consensus 406 ~~~k~al~~~~~d~~~a~~~l~~~ 429 (1012)
.+|.++|.+++|++..|+-.+...
T Consensus 246 ~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 246 ELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHhC
Confidence 999999999999999999877653
No 227
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=95.63 E-value=0.024 Score=49.00 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=27.8
Q ss_pred cCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752 20 MNPYGQVPILVERDLILYESNIINEYIDER 49 (1012)
Q Consensus 20 inP~gkVPvL~ddg~~I~ES~aIl~YL~~~ 49 (1012)
..|.|++|+|+++|..+.+|..|++||.++
T Consensus 43 ~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 43 RSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 468999999999999999999999999865
No 228
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=95.39 E-value=0.013 Score=54.56 Aligned_cols=72 Identities=26% Similarity=0.293 Sum_probs=51.8
Q ss_pred CeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHH
Q psy3752 349 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 428 (1012)
Q Consensus 349 P~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~ 428 (1012)
|.|...++... -+|.|.|--.-.....- ...-.....++.++++||++..+|++||.++|||+-.|+-+|.+
T Consensus 43 P~V~~m~~~g~---~tY~I~Ge~~~e~~~~~-----~~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 43 PQVTVMDAQGQ---KTYQIVGEPEEVEKEAE-----KEVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred CeEEEEecCCC---cEEEEEeccEEeecccc-----ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 56666666433 56888776443211000 01234556788899999999999999999999999999999975
No 229
>KOG1147|consensus
Probab=95.29 E-value=0.0023 Score=72.80 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=69.9
Q ss_pred CCEeeccHHHHHHHHhhhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH
Q psy3752 32 RDLILYESNIINEYIDERF-PYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITL 110 (1012)
Q Consensus 32 dg~~I~ES~aIl~YL~~~~-p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L 110 (1012)
++..+..+..+..|....- +.+.|||.+ .++.+++.|..+... .....+...+..+
T Consensus 44 d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~----------------------~~~~~~s~~~~~l 100 (712)
T KOG1147|consen 44 DGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST----------------------FSFDEISSSLSEL 100 (712)
T ss_pred ccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh----------------------cchHHHHHHHHHH
Confidence 5666666777777765332 234588876 788899988544332 0113455677778
Q ss_pred HhcccCCCcccCCCcCHHHHHHHHHhhhhhhcc--ccccCCCchhHHHHH
Q psy3752 111 APLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYG--INLSKSASPLIKYAE 158 (1012)
Q Consensus 111 e~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~--~~l~~~~P~L~aw~~ 158 (1012)
+..|.-..||+|.++|+||+++|..+..-.+.. +.....+-++.+|+.
T Consensus 101 d~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 101 DKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD 150 (712)
T ss_pred HhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC
Confidence 888888889999999999999999986532221 122334667888888
No 230
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=95.05 E-value=0.017 Score=53.56 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=54.9
Q ss_pred hcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHH
Q psy3752 345 KLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEE 424 (1012)
Q Consensus 345 ~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~ 424 (1012)
-...|.|.+.+.-.. -+|-|-|..... .+. ...-.....++.++++||++..+|++||.++|||+-.|+-
T Consensus 43 vf~~p~V~~m~~~G~---~tYqI~G~~~~~-~~~------~~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 43 IFENPKVQVMDILGV---KTYQITGKPKKE-KVE------EEEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred EEecCeeEEEecCCc---EEEEEecccEEe-ecc------cccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence 356788888887543 678888765431 100 0012455678889999999999999999999999999999
Q ss_pred HHHH
Q psy3752 425 ILRI 428 (1012)
Q Consensus 425 ~l~~ 428 (1012)
+|.+
T Consensus 113 ~L~~ 116 (116)
T TIGR00264 113 KLEE 116 (116)
T ss_pred HhhC
Confidence 8853
No 231
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=94.78 E-value=0.031 Score=41.22 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=24.7
Q ss_pred cccChHHHHHHHHHhcCCHHHHHHHH
Q psy3752 401 TLAPIMECKKALIEANGKLSKAEEIL 426 (1012)
Q Consensus 401 t~~~~~~~k~al~~~~~d~~~a~~~l 426 (1012)
.|.+..+|+.||..++||+++|.+||
T Consensus 11 mGf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 11 MGFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 48899999999999999999999998
No 232
>KOG1071|consensus
Probab=94.75 E-value=0.012 Score=63.38 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHhhhhh-hhhhcccccc--CceEEEEEe-------------CCEEEEEEEecCchhhhcchHHHHHHHHH
Q psy3752 418 KLSKAEEILRIKLGKK-ILNISNRNAK--DGVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKI 481 (1012)
Q Consensus 418 d~~~a~~~l~~~~~~~-a~k~~~r~~~--eG~v~~~~~-------------~~~~~lve~~~etdfva~~~~f~~l~~~i 481 (1012)
.+..++...--+-+.. .-||+-+..+ .+.++.|.| |+.|+||.+|.....++ .++.+++.|
T Consensus 192 sl~d~l~~~i~~~GENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~---~~~~~~~~i 268 (340)
T KOG1071|consen 192 SLKDQLALAIGKLGENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLT---SLEDVAKQI 268 (340)
T ss_pred eHHHHHHHHHHHhccceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhh---hHHHHHHHH
Confidence 3444444444332222 2355555543 466899998 36788888887765443 467789999
Q ss_pred HHHHHhcCCCChh----------------HhhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCC
Q psy3752 482 AKLITENTPINLD----------------QLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN 535 (1012)
Q Consensus 482 a~~iaa~~p~~~~----------------~l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~ 535 (1012)
+.|++.|.|..+. -+.|+|+-|+.+||.+++. +-|.+|..|+||+.|+
T Consensus 269 ~q~ivgm~p~s~~e~~k~e~~~~~e~et~ll~q~~lld~~itv~~~l~------~~~~~V~DfvR~E~Ge 332 (340)
T KOG1071|consen 269 CQHIVGMSPESVGESLKDEPGQGAEAETALLSQPSLLDPSITVKEYLD------PHNVSVVDFVRFEVGE 332 (340)
T ss_pred HHHhhccChhhhcccccccccccccchhhheecHhhcCchhhHHHHhc------cCCcchHHHHHHHhcc
Confidence 9999999997665 1678999999999988887 6678999999999987
No 233
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=94.69 E-value=0.034 Score=41.26 Aligned_cols=32 Identities=28% Similarity=0.210 Sum_probs=27.6
Q ss_pred hhhhcccccChHHHHHHHHHhcCCHHHHHHHHH
Q psy3752 395 GELRSKTLAPIMECKKALIEANGKLSKAEEILR 427 (1012)
Q Consensus 395 ~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~ 427 (1012)
.+|.. .|.+..+|..||..++||+++|.+||.
T Consensus 6 ~~L~~-mGf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 6 EQLLE-MGFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 33444 589999999999999999999999985
No 234
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=94.56 E-value=0.066 Score=51.72 Aligned_cols=66 Identities=24% Similarity=0.397 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHHHHhcCCcc
Q psy3752 97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFSRPSY 166 (1012)
Q Consensus 97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~ri~~rp~~ 166 (1012)
++...+++..|..+|..+......-| ++|+-||.+||.|+.+... |+.++ |++.+|+++|.++..+
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkgi~~P---~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKGIQWP---PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTTS------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccCCcCC---HHHHHHHHHHHHHcCC
Confidence 45567788888888888875555544 8999999999999988655 55443 6799999999876554
No 235
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.07 E-value=0.28 Score=47.00 Aligned_cols=65 Identities=22% Similarity=0.367 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHHHHhcCCcc
Q psy3752 98 RAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFSRPSY 166 (1012)
Q Consensus 98 ~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~ri~~rp~~ 166 (1012)
....+++..|..++..+..... ++..+|+-||.+||.|+.+... |..++ |++.+|+++|++...+
T Consensus 60 ~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkgi~~P---~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 60 QYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKGLVFP---PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcCCCCC---HHHHHHHHHHHHHhCC
Confidence 4556778888888888854444 4568999999999999988654 55443 6799999999886554
No 236
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.29 E-value=0.1 Score=45.71 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=38.3
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.++-....+++...++..+||++..+|..+.++..|.+||+
T Consensus 33 i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 33 YDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 57887777644334566777889999999999999999999999985
No 237
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=88.62 E-value=0.74 Score=39.34 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=36.6
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.++-......+.......++|++..||..+.++..|.+||+
T Consensus 26 i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 26 ISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred CCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 56777777644323445566788899999999999999999999984
No 238
>PRK10638 glutaredoxin 3; Provisional
Probab=87.48 E-value=0.72 Score=40.76 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=38.9
Q ss_pred CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
++|+.+.|+... ..++|.+.+|.+++|++..||..+.....+..+-.
T Consensus 27 i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 27 VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 578888887554 45778999999999999999999999888877754
No 239
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=87.45 E-value=15 Score=38.10 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcc-cCcc----ccChHHHHHHHHHHHHHHhh
Q psy3752 213 TLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGL----LTNFKTIKTSIQRLKEMDLF 287 (1012)
Q Consensus 213 t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~----lTN~~~~~~~~~~~~~~~~~ 287 (1012)
-...|.+|+..|.....++++|.|+|...-..- -+.++......| +| .+|. ++++..+. .+
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~-A~~~a~~l~~~~---~~~r~g~~~~~~~d~~~~~-~~--------- 91 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCD-AMHFAEELTGRY---RENRPGYPAIAISDVSHLS-CV--------- 91 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH-HHHHHHHhcccc---cCCCCCceEEecCcHHHHh-hh---------
Confidence 346799999999999899999999998775432 233332221111 11 1111 12221110 00
Q ss_pred hccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC--C
Q psy3752 288 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--D 361 (1012)
Q Consensus 288 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~--~ 361 (1012)
..+..+. ..+.++. ....+..|++|++...-+ ..+++.|+..|+|||+|+....+| +
T Consensus 92 ~~d~~~~-------~~~~~~~----------~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~ 154 (192)
T PRK00414 92 SNDFGYD-------YVFSRYV----------EAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAG 154 (192)
T ss_pred hccCCHH-------HHHHHHH----------HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 0000000 0011111 112257799998875532 357788899999999999754433 2
Q ss_pred cceeeccCCC
Q psy3752 362 GINYVIPGND 371 (1012)
Q Consensus 362 ~i~~~IP~N~ 371 (1012)
..|+.|....
T Consensus 155 ~ad~~l~~~~ 164 (192)
T PRK00414 155 LADIEIRVPH 164 (192)
T ss_pred hCCEEEEeCC
Confidence 3566665554
No 240
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=85.98 E-value=8.2 Score=39.45 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.2
Q ss_pred CCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC
Q psy3752 323 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP 360 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~ 360 (1012)
...|++|+++-.-+ ..+++.|+..|+|||+|+|...+|
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 35688888875422 356677899999999999976555
No 241
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=85.37 E-value=0.92 Score=39.05 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=25.6
Q ss_pred cCCCCCccEEEe-CCEeeccHHHHHHHH
Q psy3752 20 MNPYGQVPILVE-RDLILYESNIINEYI 46 (1012)
Q Consensus 20 inP~gkVPvL~d-dg~~I~ES~aIl~YL 46 (1012)
++|.|++|+|.+ ++..+.+-..|++||
T Consensus 44 ~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 44 LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 689999999999 999999999999998
No 242
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=84.45 E-value=14 Score=36.07 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcc-cCccccChHHHHHHHHHHHHHHhhhccCc
Q psy3752 214 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGLLTNFKTIKTSIQRLKEMDLFITNGS 292 (1012)
Q Consensus 214 ~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~lTN~~~~~~~~~~~~~~~~~~~~~~ 292 (1012)
...+.+|+..+.....+||+|.++|+..-... ...++.+.+..+-..++ .+.+.-+-.... ..-..++ ....
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~---~~~~ 90 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAI-ASHFAADLGGLFGVNRILLPAIALNDDALT---AISNDLE---YDEG 90 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEESTHHHHH-HHHHHHHHHCHSSSTSSS-SEEETTSTHHH---HHHHHTT---GGGT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhH-HHHHHHHHhcCcCCCcccccccccccchHh---hhhcccc---hhhH
Confidence 67889999999999999999999999876543 34555555444433344 343333321100 0011111 1111
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCC-Cch---hHHHHHHhcCCCeEEEe
Q psy3752 293 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG-YHK---GAVSEAIKLNIPIIGVV 354 (1012)
Q Consensus 293 ~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~-~~~---~ai~Ea~~l~iP~i~l~ 354 (1012)
+.+++ .+.+. -+.-|++|++... ++. .|+++|++.|.+||+|.
T Consensus 91 -----------~~~~~---~~~~~-----~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 91 -----------FARQL---LALYD-----IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp -----------HHHHH---HHHTT-------TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred -----------HHHHH---HHHcC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 12222 22221 1477999998765 333 36789999999999985
No 243
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=83.11 E-value=33 Score=36.97 Aligned_cols=196 Identities=18% Similarity=0.159 Sum_probs=123.5
Q ss_pred ecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhh
Q psy3752 208 INLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLF 287 (1012)
Q Consensus 208 i~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~ 287 (1012)
.-+++.+..+..|...+..-.++||+..++|-....+--|..+++-..-|-+...-+=|.+--=. ..+.+. -+..
T Consensus 37 ~AV~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~---~A~~~a--vEGa 111 (298)
T COG2103 37 LAVEAALPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGE---EAILKA--VEGA 111 (298)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCH---HHHHHh--hcCc
Confidence 34677888999999999988899999999999988877777776655444444333333332211 111110 1111
Q ss_pred hccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCC-CCCCEEEEeCC----CCchhHHHHHHhcCCCeEEE-ecCCCCCC
Q psy3752 288 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMN-IIPDAIFIIDV----GYHKGAVSEAIKLNIPIIGV-VDTNHSPD 361 (1012)
Q Consensus 288 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~-~~P~~~iv~~~----~~~~~ai~Ea~~l~iP~i~l-~Dt~~~~~ 361 (1012)
+.+ .+--.. - +++.. ..-|+||=+-. .+=.-|+++|++.|..||+| |+-++...
T Consensus 112 ED~------~~~g~~-------d-------l~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~ 171 (298)
T COG2103 112 EDD------EELGEA-------D-------LKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAIS 171 (298)
T ss_pred ccc------HHHHHH-------H-------HHHcCCCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhh
Confidence 100 000000 0 11111 24577766642 24456899999999999999 66776544
Q ss_pred -cceeeccCC-----------CCchhhHHHHhhhhhhhhh--hhh-----------hhhhhhc--------ccccChHHH
Q psy3752 362 -GINYVIPGN-----------DDSAKSIALYTKGIVDAFL--DAK-----------TVGELRS--------KTLAPIMEC 408 (1012)
Q Consensus 362 -~i~~~IP~N-----------~~s~~si~l~~~~l~~ai~--~g~-----------~v~~lr~--------~t~~~~~~~ 408 (1012)
..|++|--= -++-.+=.+++|+|+.+.. -|+ ..++||. -|++...+.
T Consensus 172 ~~Ad~~I~~~vGPEvltGSTRlKaGTAQKlvLNMlST~~Mi~lGKvy~NlMVDv~atN~KL~dRa~RIv~~aT~~~~~~A 251 (298)
T COG2103 172 RIADIAIEPVVGPEVLTGSTRLKAGTAQKLVLNMLSTGVMIKLGKVYGNLMVDVKATNEKLRDRAVRIVMEATGCSAEEA 251 (298)
T ss_pred hhcCcceeeccCccccccccccccchHHHHHHHHHHHHHHHHhcccccceEEEeecchHHHHHHHHHHHHHHhCCCHHHH
Confidence 366666321 2444567899999988653 233 1244544 489999999
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q psy3752 409 KKALIEANGKLSKAEEILRI 428 (1012)
Q Consensus 409 k~al~~~~~d~~~a~~~l~~ 428 (1012)
.++|.+++++..-|+-.+..
T Consensus 252 ~~~L~~~~~~vK~AIvm~~~ 271 (298)
T COG2103 252 EALLEEAGGNVKLAIVMLLT 271 (298)
T ss_pred HHHHHHcCCccHhHHHHHHh
Confidence 99999999999999977754
No 244
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=82.13 E-value=1.9 Score=36.31 Aligned_cols=46 Identities=15% Similarity=0.393 Sum_probs=32.1
Q ss_pred CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEee--ccHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLIL--YESNIINEYI 46 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I--~ES~aIl~YL 46 (1012)
++|+.+.++... ..+++.+.++.+.+|+|..+|..+ +++..|.+||
T Consensus 25 i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 25 IAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 355555554322 235678889999999999988877 6777777665
No 245
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=81.17 E-value=1.5 Score=41.18 Aligned_cols=34 Identities=29% Similarity=0.212 Sum_probs=29.0
Q ss_pred hhhhhcccccChHHHHHHHHHhcCCHHHHHHHHH
Q psy3752 394 VGELRSKTLAPIMECKKALIEANGKLSKAEEILR 427 (1012)
Q Consensus 394 v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~ 427 (1012)
++-.-+.+|++..+..|||.++|||+-.|+--|.
T Consensus 88 IkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 88 IKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhc
Confidence 4444567999999999999999999999997764
No 246
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=80.75 E-value=1.6 Score=33.34 Aligned_cols=36 Identities=19% Similarity=-0.049 Sum_probs=28.6
Q ss_pred hhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHH
Q psy3752 393 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 428 (1012)
Q Consensus 393 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~ 428 (1012)
.+.++..-||++-..|.+-|+.+|||++.|++.--.
T Consensus 3 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356677789999999999999999999999986543
No 247
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=80.37 E-value=27 Score=35.57 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=34.8
Q ss_pred CCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCCC--ccee--eccCCCCc
Q psy3752 323 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINY--VIPGNDDS 373 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~~--~i~~--~IP~N~~s 373 (1012)
+..|++|++...-+ ..+++.|+..|+|||+|++...+|- ..|+ .+|..+.+
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~~~ 158 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSDDTP 158 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCCChH
Confidence 46799999875433 4677889999999999998765442 2444 45554333
No 248
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=80.27 E-value=29 Score=36.24 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcc-cCcc-c-cChHHHHHHHHHHHHHHhhhcc
Q psy3752 214 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGL-L-TNFKTIKTSIQRLKEMDLFITN 290 (1012)
Q Consensus 214 ~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~-l-TN~~~~~~~~~~~~~~~~~~~~ 290 (1012)
...|.+|+..+.....++++|+|+|...-+.. -+.++.+....|...|- +|-. + +|...+.. + -.+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~-A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta-~---------and 92 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAAN-AQHFAASMINRFETERPSLPAIALNTDNVVLTA-I---------AND 92 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHHHH-HHHHHHHHhccccccCCCcceEEecCcHHHHHH-H---------hcc
Confidence 47788999999998899999999998765432 23333332111211111 1111 2 22221100 0 001
Q ss_pred CcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCch----hHHHHHHhcCCCeEEEecCC
Q psy3752 291 GSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTN 357 (1012)
Q Consensus 291 ~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~----~ai~Ea~~l~iP~i~l~Dt~ 357 (1012)
..|. ..|.++. +.+.+..|++|++...-+. .+++.|+..|+|||+|+-.+
T Consensus 93 ~~~~-------~~f~~ql----------~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~ 146 (196)
T PRK10886 93 RLHD-------EVYAKQV----------RALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_pred ccHH-------HHHHHHH----------HHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 1110 0122221 1234678999998766433 46778889999999998643
No 249
>PRK13936 phosphoheptose isomerase; Provisional
Probab=78.71 E-value=21 Score=37.25 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=27.7
Q ss_pred CCCCEEEEeCCCCch----hHHHHHHhcCCCeEEEecCCC
Q psy3752 323 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNH 358 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~----~ai~Ea~~l~iP~i~l~Dt~~ 358 (1012)
+.-|++|++...-+. .+++.|+..|+|||+|++.+.
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 467889888755333 367889999999999998553
No 250
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=76.85 E-value=41 Score=37.02 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=34.5
Q ss_pred CCCCEEEEeCCCC-ch---hHHHHHHhcCCCeEEEecCCCCCC--cceeecc
Q psy3752 323 IIPDAIFIIDVGY-HK---GAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 368 (1012)
Q Consensus 323 ~~P~~~iv~~~~~-~~---~ai~Ea~~l~iP~i~l~Dt~~~~~--~i~~~IP 368 (1012)
...|++|++.... .. .+++.|+..|+|||+|+|...+|- ..|+.++
T Consensus 174 ~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~ 225 (278)
T PRK11557 174 SPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLY 225 (278)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEE
Confidence 3688999987553 33 578999999999999999866553 3566664
No 251
>PRK13938 phosphoheptose isomerase; Provisional
Probab=76.84 E-value=49 Score=34.55 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCc-ccC--ccccChHHHHHHHHHHHHHHhh
Q psy3752 211 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQR-WLG--GLLTNFKTIKTSIQRLKEMDLF 287 (1012)
Q Consensus 211 ~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~r-w~~--G~lTN~~~~~~~~~~~~~~~~~ 287 (1012)
......+..++..+.....++++|.|+|....+.-+ +.++.+....|-.+| =+| ....+-.... .+
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A-~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~-a~--------- 93 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMCGNGGSAADA-QHFAAELTGHLIFDRPPLGAEALHANSSHLT-AV--------- 93 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHcCCCccCCcCccceEEEeCChHHHH-Hh---------
Confidence 445566777777777777999999999987765433 445544432222222 111 1111111000 00
Q ss_pred hccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC--C
Q psy3752 288 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--D 361 (1012)
Q Consensus 288 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~--~ 361 (1012)
..+..+. +. +.++. ....+..|++|++...-+ ..+++.|+..|+|||+|++...+| +
T Consensus 94 ~nd~~~~-----~~--~~~~~----------~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~ 156 (196)
T PRK13938 94 ANDYDYD-----TV--FARAL----------EGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAE 156 (196)
T ss_pred hccccHH-----HH--HHHHH----------HhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhh
Confidence 0000110 00 01111 123357899999976533 367788999999999999865444 2
Q ss_pred cceeeccCCC
Q psy3752 362 GINYVIPGND 371 (1012)
Q Consensus 362 ~i~~~IP~N~ 371 (1012)
.-|+.|....
T Consensus 157 ~aD~~l~v~~ 166 (196)
T PRK13938 157 FADFLINVPS 166 (196)
T ss_pred hCCEEEEeCC
Confidence 3555554333
No 252
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=75.98 E-value=2.5 Score=35.44 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=28.0
Q ss_pred CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEeecc
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYE 38 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I~E 38 (1012)
++|+.+.++... ..++|.+.||.+.+|+|.++|..+..
T Consensus 25 i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 25 IPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 467777666533 34678889999999999998876654
No 253
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=75.32 E-value=1.8 Score=34.50 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=31.2
Q ss_pred hhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752 393 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 429 (1012)
Q Consensus 393 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~ 429 (1012)
++.++...||--..=|.+-|++++||++.|.....+-
T Consensus 3 mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l 39 (51)
T PF03943_consen 3 MVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEEL 39 (51)
T ss_dssp HHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5778888999888889999999999999999988864
No 254
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.02 E-value=11 Score=34.25 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=22.9
Q ss_pred EEEEEecChhhHHHHHHHHHHcCCCeecC
Q psy3752 233 TLLFVGTKRQARGVIANEAVRAGMPFIDQ 261 (1012)
Q Consensus 233 ~ilfv~t~~~~~~~v~~~a~~~~~~~v~~ 261 (1012)
+||+||-......-++...++.|..++.+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE
Confidence 48999997777777888888888877554
No 255
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=74.81 E-value=56 Score=36.90 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCCEEEEeCCC----CchhHHHHHHhcCCCeEEEecCCCCC
Q psy3752 324 IPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP 360 (1012)
Q Consensus 324 ~P~~~iv~~~~----~~~~ai~Ea~~l~iP~i~l~Dt~~~~ 360 (1012)
..|++|++... +-..+++.|+..|+|||+|++...+|
T Consensus 94 ~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 134 (326)
T PRK10892 94 PQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESS 134 (326)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCc
Confidence 56888888754 33467889999999999999876443
No 256
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=74.56 E-value=4.3 Score=33.79 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=34.1
Q ss_pred CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEeeccHHHHHHH
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEY 45 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~Y 45 (1012)
++|+.+.++... ..+++.+++|..++|++..+|..+.++..|.+.
T Consensus 25 i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 25 IEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 456655554333 346778889999999999999999999888764
No 257
>PRK02947 hypothetical protein; Provisional
Probab=72.07 E-value=47 Score=36.01 Aligned_cols=31 Identities=23% Similarity=0.103 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEecChhhH
Q psy3752 214 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQAR 244 (1012)
Q Consensus 214 ~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~ 244 (1012)
...+.+|+..+.....++++|.|+|......
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~G~G~S~~ 53 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVFGTGHSHI 53 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHH
Confidence 3578899999998889999999999987543
No 258
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=70.91 E-value=28 Score=35.53 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCCC--c--ceeeccCCC
Q psy3752 324 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--G--INYVIPGND 371 (1012)
Q Consensus 324 ~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~~--~--i~~~IP~N~ 371 (1012)
.-|++|++....+ ..+++.|+..|+|||+|+|+..+|- . +.+.+|++.
T Consensus 75 ~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 130 (179)
T cd05005 75 PGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAAT 130 (179)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 5688888865422 3477888999999999999775543 2 344555543
No 259
>PRK15482 transcriptional regulator MurR; Provisional
Probab=70.87 E-value=61 Score=35.84 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCCC--cceeecc
Q psy3752 324 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 368 (1012)
Q Consensus 324 ~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~~--~i~~~IP 368 (1012)
.-|++|++.-..+ ..+++.|+..|.|||+|+|...+|- ..|+.|+
T Consensus 182 ~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~ 232 (285)
T PRK15482 182 KGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLD 232 (285)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEE
Confidence 4588888875433 3577788899999999999876543 3455544
No 260
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=69.07 E-value=1.3e+02 Score=30.27 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCcc-cc-ChHHHHHHHHHHHHHHhhh
Q psy3752 211 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGL-LT-NFKTIKTSIQRLKEMDLFI 288 (1012)
Q Consensus 211 ~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~-lT-N~~~~~~~~~~~~~~~~~~ 288 (1012)
+.-...+.+|...+..-..+|++||..|...-+.++-.-.++.+|-|.-..+=+|+. || |...+...-
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~---------- 90 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIA---------- 90 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhh----------
Confidence 555678889999999888999999999998887777666677777776666667764 34 655432221
Q ss_pred ccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCch----hHHHHHHhcCCCeEEEecCCC----CC
Q psy3752 289 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNH----SP 360 (1012)
Q Consensus 289 ~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~----~ai~Ea~~l~iP~i~l~Dt~~----~~ 360 (1012)
++|.-.+ .|.|+.+- +.+.-|+++=+.+.-|. .|++.|..+++-||++.-.|. ..
T Consensus 91 -----NDy~yd~--vFsRqveA----------~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~ 153 (176)
T COG0279 91 -----NDYGYDE--VFSRQVEA----------LGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGL 153 (176)
T ss_pred -----ccccHHH--HHHHHHHh----------cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 1222222 24554433 44677999988877553 578899999999999986664 33
Q ss_pred CcceeeccCCCCc
Q psy3752 361 DGINYVIPGNDDS 373 (1012)
Q Consensus 361 ~~i~~~IP~N~~s 373 (1012)
..+.+.||..+.+
T Consensus 154 ~D~~i~VPs~~t~ 166 (176)
T COG0279 154 LDVEIRVPSTDTA 166 (176)
T ss_pred cceEEecCCCcch
Confidence 3466777887443
No 261
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=68.78 E-value=6.6 Score=32.83 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=32.3
Q ss_pred hhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHH
Q psy3752 392 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 428 (1012)
Q Consensus 392 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~ 428 (1012)
.++.++-.+||--..=|.+.|+++|||++.|.....+
T Consensus 14 ~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 14 EMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3566777889988899999999999999999988776
No 262
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=68.66 E-value=6.8 Score=29.72 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=28.7
Q ss_pred hhhhhhccc-ccChHHHHHHHHHhcCCHHHHHHHHHH
Q psy3752 393 TVGELRSKT-LAPIMECKKALIEANGKLSKAEEILRI 428 (1012)
Q Consensus 393 ~v~~lr~~t-~~~~~~~k~al~~~~~d~~~a~~~l~~ 428 (1012)
++..|++.. .++...-+.+|.+++||+|.|++.|-+
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 355666654 488899999999999999999998854
No 263
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=68.29 E-value=2e+02 Score=32.69 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=31.6
Q ss_pred CCCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCCCCCcceeec
Q psy3752 323 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVI 367 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~I 367 (1012)
+.+|.|++.....+ ..++++|...|||+|.+ |++.+++...+.|
T Consensus 79 ~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~-d~~~~~~~~~~~V 124 (336)
T PRK15408 79 QGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTW-DSDTKPECRSYYI 124 (336)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEe-CCCCCCccceEEE
Confidence 36999998744444 68999999999999985 6665444444444
No 264
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=63.05 E-value=1.4e+02 Score=29.74 Aligned_cols=49 Identities=10% Similarity=-0.000 Sum_probs=33.3
Q ss_pred CCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCCC--cceeeccCCC
Q psy3752 323 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPGND 371 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~~--~i~~~IP~N~ 371 (1012)
+..|++|++...-+ ..+++.|+..|+|+|+|++...+|- ..|+.|...+
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~ 132 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPH 132 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 46789999875533 3567888999999999998654332 3455554443
No 265
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=61.76 E-value=64 Score=36.70 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCCCc-------ceeeccCCCCchhhHHHHhhhhhhh
Q psy3752 324 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPDG-------INYVIPGNDDSAKSIALYTKGIVDA 387 (1012)
Q Consensus 324 ~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~~~-------i~~~IP~N~~s~~si~l~~~~l~~a 387 (1012)
.-|++|++...-+ ..+++.|+..|+|||+|++ +++... ..++||++.-+..|..+++..+...
T Consensus 78 ~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~-~~~L~~~a~~~~~~~i~ip~~~~~r~s~~~ll~~l~~~ 151 (337)
T PRK08674 78 EKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS-GGKLKEMAKEHGLPVIIVPGGYQPRAALGYLFTPLLKI 151 (337)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC-CchHHHHHHhcCCeEEEeCCCCcchhhHHHHHHHHHHH
Confidence 5688888875533 3678899999999999996 333322 2678888876666666665555433
No 266
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=61.35 E-value=11 Score=32.16 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=31.5
Q ss_pred CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEeeccHHHHH
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIIN 43 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl 43 (1012)
|+|+.+.++-.. ..+++.+++|.+++|++..+|..|..-....
T Consensus 26 i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 26 LPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred CceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHH
Confidence 567777665432 3467889999999999999998887655443
No 267
>PRK13937 phosphoheptose isomerase; Provisional
Probab=60.61 E-value=1.2e+02 Score=31.16 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEecChhh
Q psy3752 214 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQA 243 (1012)
Q Consensus 214 ~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~ 243 (1012)
...|..|+.-+.....++++|.|+|.....
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~ 50 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSA 50 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhH
Confidence 467888888888888999999999998755
No 268
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=58.92 E-value=18 Score=39.29 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=35.2
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCC
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGN 370 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N 370 (1012)
..+|.+|+.++..+..+++++...|||+|.+ |++.+.....|.-+-|
T Consensus 63 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~d~ 109 (275)
T cd06295 63 GRADGVILIGQHDQDPLPERLAETGLPFVVW-GRPLPGQPYCYVGSDN 109 (275)
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCccCCCCCCEEEECc
Confidence 3799999987766677899999999999966 7765544455655544
No 269
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=58.22 E-value=37 Score=35.43 Aligned_cols=62 Identities=27% Similarity=0.327 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHH--HHHHHHHHH
Q psy3752 944 IKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFIL--EINQLLINK 1005 (1012)
Q Consensus 944 ~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~--~id~~~~~k 1005 (1012)
...++.++|-..-..|.+.++.|+....+...|+++.+.+.+++.+|++...+ .|+.++++|
T Consensus 84 ~~~~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~kE~~iE~llkak 147 (196)
T PF12685_consen 84 GSDYFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKMEKEMEIENLLKAK 147 (196)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34579999999999999999999999999999999999999999999987665 466666655
No 270
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=57.53 E-value=87 Score=38.40 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecCh----hhHHHHHHHHHHcCC----CeecCcccCccccChHHHHHHHHH
Q psy3752 209 NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKR----QARGVIANEAVRAGM----PFIDQRWLGGLLTNFKTIKTSIQR 280 (1012)
Q Consensus 209 ~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~----~~~~~v~~~a~~~~~----~~v~~rw~~G~lTN~~~~~~~~~~ 280 (1012)
|. ..+.-+.+|...|.....++.+|+++|=-. .+.-+..++.++.|. +||-+|...|-=-|...+ .+
T Consensus 48 ~P-~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i----~~ 122 (575)
T PRK11070 48 PW-QQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVV----DQ 122 (575)
T ss_pred Ch-HHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHH----HH
Confidence 44 335667788888887778999999998765 344566677778876 567777666532332221 11
Q ss_pred HHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCC-CchhHHHHHHhcCCCeEEEecCC
Q psy3752 281 LKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG-YHKGAVSEAIKLNIPIIGVVDTN 357 (1012)
Q Consensus 281 ~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~-~~~~ai~Ea~~l~iP~i~l~Dt~ 357 (1012)
+ . ..-++++|.+|.. .+..++..|+.+||.||- +|=.
T Consensus 123 ~------------------------------~---------~~~~~LiItvD~Gi~~~e~i~~a~~~gidvIV-tDHH 160 (575)
T PRK11070 123 A------------------------------H---------ARGAQLIVTVDNGISSHAGVAHAHALGIPVLV-TDHH 160 (575)
T ss_pred H------------------------------H---------hcCCCEEEEEcCCcCCHHHHHHHHHCCCCEEE-ECCC
Confidence 1 0 0246899999877 677899999999999864 4543
No 271
>PRK08006 replicative DNA helicase; Provisional
Probab=57.02 E-value=95 Score=37.13 Aligned_cols=162 Identities=17% Similarity=0.266 Sum_probs=84.6
Q ss_pred CCCcceeecccCCceee-----cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHH-HcCCCeecCcccC
Q psy3752 192 PKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAV-RAGMPFIDQRWLG 265 (1012)
Q Consensus 192 p~m~~yi~~~r~g~~ii-----~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~-~~~~~~v~~rw~~ 265 (1012)
+.+..++-|.+.|--|+ ..-||...|..|.++.. .++..|+|++.--....++.++.. .++..+ .++-.
T Consensus 212 ~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~---~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~--~~i~~ 286 (471)
T PRK08006 212 DDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAM---LQDKPVLIFSLEMPGEQIMMRMLASLSRVDQ--TRIRT 286 (471)
T ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---hcCCeEEEEeccCCHHHHHHHHHHHhcCCCH--HHhhc
Confidence 34444555666664444 67789888877766532 357789999887666666665543 344433 34556
Q ss_pred ccccC--hHHHHHHHHHH-HHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeC-------CC-
Q psy3752 266 GLLTN--FKTIKTSIQRL-KEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID-------VG- 334 (1012)
Q Consensus 266 G~lTN--~~~~~~~~~~~-~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~-------~~- 334 (1012)
|.||+ |..+.....++ ....-...+. ..+|-.+. ..+..++.+..+|+ + +||+| +.
T Consensus 287 ~~l~~~e~~~~~~a~~~~~~~~~l~I~d~--~~~t~~~i---~~~~r~~~~~~~~~-------~-lvvIDYLqli~~~~~ 353 (471)
T PRK08006 287 GQLDDEDWARISGTMGILLEKRNMYIDDS--SGLTPTEV---RSRARRIFREHGGL-------S-LIMIDYLQLMRVPSL 353 (471)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEECC--CCCCHHHH---HHHHHHHHHhcCCC-------C-EEEEccHHHccCCCC
Confidence 78875 33333333333 1110001111 12444443 33333444444343 3 34444 11
Q ss_pred -Cch-hHHHH--------HHhcCCCeEEEecCCCCCCcceeeccCCC
Q psy3752 335 -YHK-GAVSE--------AIKLNIPIIGVVDTNHSPDGINYVIPGND 371 (1012)
Q Consensus 335 -~~~-~ai~E--------a~~l~iP~i~l~Dt~~~~~~i~~~IP~N~ 371 (1012)
.++ ..+.+ |+.+|||||+++-.|-..+.-.-.-|...
T Consensus 354 ~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~ls 400 (471)
T PRK08006 354 SDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNS 400 (471)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchh
Confidence 222 23444 45689999999988766543333334443
No 272
>PRK10329 glutaredoxin-like protein; Provisional
Probab=56.72 E-value=11 Score=33.10 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=24.0
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeec
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILY 37 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ 37 (1012)
|+|+.+.++-.....+....++..+||+++.++..+.
T Consensus 26 I~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 26 FDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 5788777764321222334579999999998875543
No 273
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=56.34 E-value=12 Score=37.07 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=34.6
Q ss_pred eeccccccccCCcCC--cCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHH
Q psy3752 746 ATKVDGIYNSDPNKC--LSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR 810 (1012)
Q Consensus 746 lTDVdGVy~~dP~~~--~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~ 810 (1012)
.+|||||+|+ ++.. ++.+.+...+ +.|=..++...+.|+.+.|++|++...+.+
T Consensus 12 i~DVDGvLTD-G~ly~~~~Gee~KaFn----------v~DG~Gik~l~~~Gi~vAIITGr~s~ive~ 67 (170)
T COG1778 12 ILDVDGVLTD-GKLYYDENGEEIKAFN----------VRDGHGIKLLLKSGIKVAIITGRDSPIVEK 67 (170)
T ss_pred EEeccceeec-CeEEEcCCCceeeeee----------ccCcHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 5799999985 2211 1222222222 223336778889999999999998776664
No 274
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=56.30 E-value=35 Score=39.03 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=35.1
Q ss_pred cC-CEEEEEecCh----hhHHHHHHHHHHcCCCeecCcccC-ccccChHHHHHHH
Q psy3752 230 SK-GTLLFVGTKR----QARGVIANEAVRAGMPFIDQRWLG-GLLTNFKTIKTSI 278 (1012)
Q Consensus 230 ~~-~~ilfv~t~~----~~~~~v~~~a~~~~~~~v~~rw~~-G~lTN~~~~~~~~ 278 (1012)
.| +++.|||+.. ..+++++++.+..|..-+.++++| |. |+|..+=..|
T Consensus 132 ~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~-td~~~ii~~I 185 (363)
T PF13433_consen 132 FGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGA-TDFDPIIAEI 185 (363)
T ss_dssp S--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-H-HHHHHHHHHH
T ss_pred cCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCc-hhHHHHHHHH
Confidence 46 8999999986 568888899999999999999987 44 7777653333
No 275
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=56.22 E-value=20 Score=31.80 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=35.0
Q ss_pred ceEEEEecCCC-CCchhhhcCC--CCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752 2 DFEIRDIDLFN-KPDNIFRMNP--YGQVPILVERDLILYESNIINEYIDERFP 51 (1012)
Q Consensus 2 ~ye~~~Vd~~~-~~~~~~~inP--~gkVPvL~ddg~~I~ES~aIl~YL~~~~p 51 (1012)
+|+.+.++... ..+++....- ...||++..||..+..+..|..|+.+++.
T Consensus 31 ~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~~~ 83 (86)
T TIGR02183 31 EFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKENFD 83 (86)
T ss_pred cEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhccc
Confidence 45555554221 1234544433 36899999999999999999999988764
No 276
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=56.18 E-value=94 Score=30.30 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCCCEEEEeCCCCc-----hhHHHHHHhcCCCeEEEecCCCCCCccee--eccCCCC--chhhHHHHhhhhhhhhh
Q psy3752 323 IIPDAIFIIDVGYH-----KGAVSEAIKLNIPIIGVVDTNHSPDGINY--VIPGNDD--SAKSIALYTKGIVDAFL 389 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~-----~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~--~IP~N~~--s~~si~l~~~~l~~ai~ 389 (1012)
...+++|++.+..+ ..+++.+++.|.|+|+|.+.+.+....|+ .+|.-.+ ++-..-+.+++|+..+.
T Consensus 60 ~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it~~~~s~~~~d~~i~~~~~~~~~~~~~~~~~~q~la~~~a 135 (153)
T cd05009 60 DEGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDGDAKDLADVVIRVPATVEELSPLLYIVPLQLLAYHLA 135 (153)
T ss_pred cCCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEecCCcccccCCeEEECCCCchhHHHHHHHHHHHHHHHHHH
Confidence 35667777775422 24788889999999999876543333344 4443222 23333444455655543
No 277
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=55.83 E-value=82 Score=27.09 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 929 IPPLTKERREEIVKLIKNITEETKISIRKIRRD 961 (1012)
Q Consensus 929 iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~ 961 (1012)
=|+--+|.|+++...+.++.++++....+++..
T Consensus 20 aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~ 52 (74)
T PF12732_consen 20 APKSGKETREKLKDKAEDLKDKAKDLYEEAKEK 52 (74)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888887776666665555554443
No 278
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=55.32 E-value=20 Score=33.41 Aligned_cols=48 Identities=19% Similarity=0.386 Sum_probs=33.9
Q ss_pred EEEEecCCCCCchhhh-cC-CCCCccEEEe-CC-------------EeeccHHHHHHHHhhhCC
Q psy3752 4 EIRDIDLFNKPDNIFR-MN-PYGQVPILVE-RD-------------LILYESNIINEYIDERFP 51 (1012)
Q Consensus 4 e~~~Vd~~~~~~~~~~-in-P~gkVPvL~d-dg-------------~~I~ES~aIl~YL~~~~p 51 (1012)
+.++|++.....+..+ +- ....+|+|+- +| ..|.++..|++||+++|+
T Consensus 45 dV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~La~r~g 108 (112)
T PF11287_consen 45 DVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYLAERHG 108 (112)
T ss_pred cEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHHHHHcC
Confidence 5567776654444443 22 3677999983 22 379999999999999996
No 279
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=54.87 E-value=5.9 Score=34.79 Aligned_cols=34 Identities=29% Similarity=0.161 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhh
Q psy3752 404 PIMECKKALIEANGKLSKAEEILRIKLGKKILNI 437 (1012)
Q Consensus 404 ~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~ 437 (1012)
+=..-++||-.++-|++||+.||+++..++..|+
T Consensus 45 ~e~~i~eal~~~~fDvekAl~~Ll~~~~~~~~~~ 78 (79)
T PF08938_consen 45 PEEQIKEALWHYYFDVEKALDYLLSKFKKKKPKK 78 (79)
T ss_dssp -CCHHHHHHHHTTT-CCHHHHHHHHCCHSSS---
T ss_pred CHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC
Confidence 6688999999999999999999999866555443
No 280
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=54.83 E-value=1.7e+02 Score=32.38 Aligned_cols=48 Identities=27% Similarity=0.276 Sum_probs=33.4
Q ss_pred CCCCEEEEeCCCC----chhHHHHHHhcCCCeEEEecCCCCCC--cceeec--cCC
Q psy3752 323 IIPDAIFIIDVGY----HKGAVSEAIKLNIPIIGVVDTNHSPD--GINYVI--PGN 370 (1012)
Q Consensus 323 ~~P~~~iv~~~~~----~~~ai~Ea~~l~iP~i~l~Dt~~~~~--~i~~~I--P~N 370 (1012)
..-|++|++.... -..+++.|+..|+|||+|+|...+|- ..|+.| |.+
T Consensus 186 ~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~ 241 (292)
T PRK11337 186 QEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTAQ 241 (292)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcCCC
Confidence 3678888886443 33566788899999999999887663 345544 544
No 281
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=54.31 E-value=23 Score=36.00 Aligned_cols=51 Identities=25% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcccCC---CcccCCC-cCHHHHHHHHHhhhhhhccccccCCCchhHHHH
Q psy3752 103 IRDRLITLAPLFLKN---KYMLGDE-FSMLDVVIAPLLWRLDYYGINLSKSASPLIKYA 157 (1012)
Q Consensus 103 l~~~L~~Le~~L~~~---~fL~Gd~-~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~ 157 (1012)
-.+++..|++.|++. .|+.|+. +|-.||.+++.|..+..- ++++ |.|..|+
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~p--~LP~--~~l~~~L 167 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLVP--ELPD--PFLRDHL 167 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhcc--cCCc--HHHHHHh
Confidence 456778889999887 8999987 999999999988765432 2332 4565554
No 282
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=53.75 E-value=22 Score=31.25 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=35.5
Q ss_pred CceEEEEecCCC-CCchhhhcC--CCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMN--PYGQVPILVERDLILYESNIINEYIDERFP 51 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~in--P~gkVPvL~ddg~~I~ES~aIl~YL~~~~p 51 (1012)
++|+.+.++-.. ..+++.... +...||++..||..+.....+.+|+.+.|+
T Consensus 31 i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~~~~ 84 (85)
T PRK11200 31 FDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKENLG 84 (85)
T ss_pred CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHHhcc
Confidence 356666555321 123444433 336899999999999999999999988874
No 283
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=53.57 E-value=9.9 Score=35.97 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=17.0
Q ss_pred hcCCCCCccEEEe--CCEeeccHHHHHHHHhhhCCC
Q psy3752 19 RMNPYGQVPILVE--RDLILYESNIINEYIDERFPY 52 (1012)
Q Consensus 19 ~inP~gkVPvL~d--dg~~I~ES~aIl~YL~~~~p~ 52 (1012)
.+|+-..-|-|.+ +|+.++|+.||++|+..-|.+
T Consensus 29 ~v~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 29 EVNEDESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp EE-SS--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred eeCCccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 4567667799965 789999999999999998863
No 284
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=53.54 E-value=1.1e+02 Score=34.96 Aligned_cols=109 Identities=22% Similarity=0.234 Sum_probs=61.7
Q ss_pred ecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCccccChHH-HHHHHHHHHHHHh
Q psy3752 208 INLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKT-IKTSIQRLKEMDL 286 (1012)
Q Consensus 208 i~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~-~~~~~~~~~~~~~ 286 (1012)
||+..+- +..-...+|..+-+ .|+=.+|-+|... .+.++++..|..|+. +|+-=.+... +...+.|
T Consensus 5 iDi~~p~-hvhfFk~~I~eL~~-~GheV~it~R~~~--~~~~LL~~yg~~y~~---iG~~g~~~~~Kl~~~~~R------ 71 (335)
T PF04007_consen 5 IDITHPA-HVHFFKNIIRELEK-RGHEVLITARDKD--ETEELLDLYGIDYIV---IGKHGDSLYGKLLESIER------ 71 (335)
T ss_pred EECCCch-HHHHHHHHHHHHHh-CCCEEEEEEeccc--hHHHHHHHcCCCeEE---EcCCCCCHHHHHHHHHHH------
Confidence 3444432 55556677888844 4544445555543 466788888988864 4432233211 1111111
Q ss_pred hhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCC
Q psy3752 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNH 358 (1012)
Q Consensus 287 ~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~ 358 (1012)
..+.-++-+. ..||++|-. ....|.+=|.-+|||+|.++||..
T Consensus 72 ------------------~~~l~~~~~~--------~~pDv~is~---~s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 72 ------------------QYKLLKLIKK--------FKPDVAISF---GSPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred ------------------HHHHHHHHHh--------hCCCEEEec---CcHHHHHHHHHhCCCeEEEecCch
Confidence 1111122222 279999854 335677788999999999999854
No 285
>PRK06904 replicative DNA helicase; Validated
Probab=53.35 E-value=92 Score=37.25 Aligned_cols=152 Identities=16% Similarity=0.244 Sum_probs=78.3
Q ss_pred CcceeecccCCceee-----cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHH-HHcCCCeecCcccCc-
Q psy3752 194 MSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLGG- 266 (1012)
Q Consensus 194 m~~yi~~~r~g~~ii-----~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~G- 266 (1012)
+...+.|.+.|--|| ..-||...|.-|.+... .++..++|++.--....++.++. ..++..+ .++..|
T Consensus 211 LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~---~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~--~~i~~g~ 285 (472)
T PRK06904 211 LDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAM---ASEKPVLVFSLEMPAEQIMMRMLASLSRVDQ--TKIRTGQ 285 (472)
T ss_pred HHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHH---hcCCeEEEEeccCCHHHHHHHHHHhhCCCCH--HHhccCC
Confidence 333445566554443 66788877766655532 25778999988777777776654 4444443 245566
Q ss_pred cccC--hHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeC-------CC--C
Q psy3752 267 LLTN--FKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID-------VG--Y 335 (1012)
Q Consensus 267 ~lTN--~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~-------~~--~ 335 (1012)
.||+ |..+......+.......-+. -..+|-.+ +..+..++.+..+| .++| |+| +. .
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d-~~~~t~~~---i~~~~r~~~~~~~~-------~~lv-vIDYLqli~~~~~~~ 353 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDD-SSGLTPTE---LRSRARRVYRENGG-------LSLI-MVDYLQLMRAPGFED 353 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEC-CCCCCHHH---HHHHHHHHHHhCCC-------CCEE-EEecHHhcCCCCCCC
Confidence 7775 334433333332110000000 01244433 33333344443333 3443 333 22 2
Q ss_pred ch-hHHHH--------HHhcCCCeEEEecCCCCCCc
Q psy3752 336 HK-GAVSE--------AIKLNIPIIGVVDTNHSPDG 362 (1012)
Q Consensus 336 ~~-~ai~E--------a~~l~iP~i~l~Dt~~~~~~ 362 (1012)
++ ..+.| |+.+|||||+++--|-+.+.
T Consensus 354 ~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~ 389 (472)
T PRK06904 354 NRTLEIAEISRSLKALAKELKVPVVALSQLNRTLEN 389 (472)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhc
Confidence 22 23444 56789999999987766543
No 286
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=52.65 E-value=1.1e+02 Score=33.72 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCC----chhHHHHHHhcCCCeEEEecCCCCCC-cceeeccC
Q psy3752 324 IPDAIFIIDVGY----HKGAVSEAIKLNIPIIGVVDTNHSPD-GINYVIPG 369 (1012)
Q Consensus 324 ~P~~~iv~~~~~----~~~ai~Ea~~l~iP~i~l~Dt~~~~~-~i~~~IP~ 369 (1012)
.-|++|++.... -..+++.|+..|.|||+|++.+++.. ..|+.|+.
T Consensus 175 ~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 175 DGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 568888886443 23477889999999999998555433 34555543
No 287
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=52.46 E-value=2.7e+02 Score=31.16 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC
Q psy3752 323 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP 360 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~ 360 (1012)
...|++|++...-+ ..+++.|+..|+|||+|++...+|
T Consensus 88 ~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~ 129 (321)
T PRK11543 88 ESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSP 129 (321)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 46789999876533 457788999999999999966444
No 288
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=52.22 E-value=71 Score=35.58 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccC
Q psy3752 216 MYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295 (1012)
Q Consensus 216 ~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1012)
++.|++.++..+ +|-.|.|+...+.. ..+...-......-+.-.+..|.+-.+.++........
T Consensus 14 H~~R~~~la~~L--rg~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 77 (318)
T PF13528_consen 14 HASRCLALARAL--RGHEVTFITSGPAP-EFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWLA------------- 77 (318)
T ss_pred HHHHHHHHHHHH--ccCceEEEEcCCcH-HHhccccCEEEccCceEeccCCccchHHHHHHHHHhhH-------------
Confidence 566777777777 36778888777554 33322111111111122233455555555544432111
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCC
Q psy3752 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSP 360 (1012)
Q Consensus 296 ~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~ 360 (1012)
.+.+...++.+.+.. ..||+||. | .+..+..-|+..|||+|++.|-...+
T Consensus 78 -------~~~~~~~~~~~~l~~-----~~pDlVIs-D--~~~~~~~aa~~~giP~i~i~~~~~~~ 127 (318)
T PF13528_consen 78 -------RLARRIRREIRWLRE-----FRPDLVIS-D--FYPLAALAARRAGIPVIVISNQYWFL 127 (318)
T ss_pred -------HHHHHHHHHHHHHHh-----cCCCEEEE-c--ChHHHHHHHHhcCCCEEEEEehHHcc
Confidence 111222222222221 26999874 3 34457788899999999998766543
No 289
>PRK07004 replicative DNA helicase; Provisional
Probab=52.04 E-value=94 Score=37.07 Aligned_cols=147 Identities=17% Similarity=0.191 Sum_probs=78.0
Q ss_pred eeecccCCceee-----cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHH-HHcCCCeecCcccCccccC
Q psy3752 197 YIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLGGLLTN 270 (1012)
Q Consensus 197 yi~~~r~g~~ii-----~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~G~lTN 270 (1012)
.+-|.+.|--|+ ..-||...+.-|.+... ..+..++|++.--....++.++. ..++..+ .++..|.||.
T Consensus 206 ~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~---~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~--~~i~~g~l~~ 280 (460)
T PRK07004 206 MTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAV---EYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQ--HRMRTGRLTD 280 (460)
T ss_pred cccCCCCCceEEEEeCCCCCccHHHHHHHHHHHH---HcCCeEEEEeCCCCHHHHHHHHHHhhcCCCH--HHHhcCCCCH
Confidence 344555553333 55678776666654432 35788999988777777777764 4443332 3455677774
Q ss_pred --hHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeC------CC---Cch-h
Q psy3752 271 --FKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID------VG---YHK-G 338 (1012)
Q Consensus 271 --~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~------~~---~~~-~ 338 (1012)
|..+...+.++.... -.++..+.-....+..+..++.+..++ +++|| +| +. .++ .
T Consensus 281 ~e~~~~~~a~~~l~~~~-----l~I~d~~~~~~~~i~~~~r~l~~~~~~-------~~lvi-IDYLql~~~~~~~~~r~~ 347 (460)
T PRK07004 281 EDWPKLTHAVQKMSEAQ-----LFIDETGGLNPMELRSRARRLARQCGK-------LGLII-IDYLQLMSGSSQGENRAT 347 (460)
T ss_pred HHHHHHHHHHHHHhcCC-----EEEECCCCCCHHHHHHHHHHHHHhCCC-------CCEEE-EChhhhccCCCCCCcHHH
Confidence 444444444443221 112222221223344445556555443 34443 33 11 112 2
Q ss_pred HHHH--------HHhcCCCeEEEecCCCCCC
Q psy3752 339 AVSE--------AIKLNIPIIGVVDTNHSPD 361 (1012)
Q Consensus 339 ai~E--------a~~l~iP~i~l~Dt~~~~~ 361 (1012)
.+.+ |+.++||||+++--|-+.+
T Consensus 348 ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e 378 (460)
T PRK07004 348 EISEISRSLKSLAKELDVPVIALSQLNRGLE 378 (460)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccChhhh
Confidence 2332 5568999999998776544
No 290
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=51.30 E-value=10 Score=32.28 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=29.4
Q ss_pred CceEEEEecCCC-CCchhhhcC-CCCCccEEE-eCCEeeccHH--HHHHHH
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMN-PYGQVPILV-ERDLILYESN--IINEYI 46 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~in-P~gkVPvL~-ddg~~I~ES~--aIl~YL 46 (1012)
++|+.+.++-.. ..+++.++| +...||+++ ++|..+.++. -+..+|
T Consensus 25 ~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 25 AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 356665554333 235667787 999999997 5777777654 344444
No 291
>PRK08506 replicative DNA helicase; Provisional
Probab=51.13 E-value=1.1e+02 Score=36.49 Aligned_cols=134 Identities=20% Similarity=0.288 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHH-HHcCCCeecCcccCccccC--hHHHHHHHHHHHHHH
Q psy3752 209 NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLGGLLTN--FKTIKTSIQRLKEMD 285 (1012)
Q Consensus 209 ~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~G~lTN--~~~~~~~~~~~~~~~ 285 (1012)
..-||...+.-|.+.. .+|..|+|++.--....++.++. ..+|..+ +++..|.|+. |..+.....++....
T Consensus 202 g~GKT~fal~ia~~~~----~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~--~~i~~~~l~~~e~~~~~~a~~~l~~~~ 275 (472)
T PRK08506 202 SMGKTTLCLNMALKAL----NQDKGVAFFSLEMPAEQLMLRMLSAKTSIPL--QNLRTGDLDDDEWERLSDACDELSKKK 275 (472)
T ss_pred CCChHHHHHHHHHHHH----hcCCcEEEEeCcCCHHHHHHHHHHHhcCCCH--HHHhcCCCCHHHHHHHHHHHHHHHcCC
Confidence 4568888888877753 56788999988777777776664 4455543 3455677774 444444444433211
Q ss_pred hhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCC-------C--Cc-hhHHH--------HHHhcC
Q psy3752 286 LFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDV-------G--YH-KGAVS--------EAIKLN 347 (1012)
Q Consensus 286 ~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~-------~--~~-~~ai~--------Ea~~l~ 347 (1012)
-...+. ..++-.+ +.....++++..+|+ ++|| +|. . .+ ...+. =|+.+|
T Consensus 276 l~I~d~--~~~ti~~---I~~~~r~l~~~~~~~-------~lvv-IDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ 342 (472)
T PRK08506 276 LFVYDS--GYVNIHQ---VRAQLRKLKSQHPEI-------GLAV-IDYLQLMSGSGNFKDRHLQISEISRGLKLLARELD 342 (472)
T ss_pred eEEECC--CCCCHHH---HHHHHHHHHHhCCCC-------CEEE-EcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 001111 1233333 333344454444332 3333 441 1 11 12222 266789
Q ss_pred CCeEEEecCCCCCC
Q psy3752 348 IPIIGVVDTNHSPD 361 (1012)
Q Consensus 348 iP~i~l~Dt~~~~~ 361 (1012)
||||+++-.|-+..
T Consensus 343 ipVi~lsQLnR~~e 356 (472)
T PRK08506 343 IPIIALSQLNRSLE 356 (472)
T ss_pred CcEEEEeecCcchh
Confidence 99999998776543
No 292
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=51.05 E-value=1.4e+02 Score=34.14 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=53.1
Q ss_pred CCCEEEEeCCC----CchhHHHHHHhcCCCeEEEecCCCCC--CcceeeccCCCCchhhHH-HHhhhhhhhhhhhhhhhh
Q psy3752 324 IPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAKSIA-LYTKGIVDAFLDAKTVGE 396 (1012)
Q Consensus 324 ~P~~~iv~~~~----~~~~ai~Ea~~l~iP~i~l~Dt~~~~--~~i~~~IP~N~~s~~si~-l~~~~l~~ai~~g~~v~~ 396 (1012)
.-+++|++... +-..|++.|+..|.|||+|+....+| +..||.|+.+-....... +.+..+.-+...+..
T Consensus 92 ~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag~~~~~~~~~~~~~~~~~~~~~~--- 168 (340)
T PRK11382 92 DRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVVLEMITRLA--- 168 (340)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCCchHHHHHHHHHHHHHHHHhcCC---
Confidence 34677777654 33457788888999999998765444 467888888743311111 111112112211110
Q ss_pred hhcccccChHHHHHHHHHhcCCHHHHHH
Q psy3752 397 LRSKTLAPIMECKKALIEANGKLSKAEE 424 (1012)
Q Consensus 397 lr~~t~~~~~~~k~al~~~~~d~~~a~~ 424 (1012)
......++.++|......++++.+
T Consensus 169 ----~~~~~~~~~~~l~~l~~~i~~~~~ 192 (340)
T PRK11382 169 ----PNAEIGKIKNDLKQLPNALGHLVR 192 (340)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345666777766666666655
No 293
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=50.97 E-value=1.1e+02 Score=38.31 Aligned_cols=47 Identities=26% Similarity=0.191 Sum_probs=34.5
Q ss_pred CCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC--CcceeeccCC
Q psy3752 324 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGN 370 (1012)
Q Consensus 324 ~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~--~~i~~~IP~N 370 (1012)
..+++|++...-+ ..|++.|+..|+|||+|++...+| +..|+.|+.+
T Consensus 369 ~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ 421 (640)
T PTZ00295 369 EDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLN 421 (640)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeC
Confidence 4578888876543 467888899999999999876555 4577777654
No 294
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=50.95 E-value=22 Score=30.74 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=36.2
Q ss_pred CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDE 48 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~ 48 (1012)
++|+.+.++... ..+++.+..+...+|++..+|..+.....+..+-.+
T Consensus 24 i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 24 VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 567787776433 235567777889999999999999988888777554
No 295
>PRK08840 replicative DNA helicase; Provisional
Probab=50.88 E-value=1.3e+02 Score=36.02 Aligned_cols=159 Identities=17% Similarity=0.242 Sum_probs=83.7
Q ss_pred CcceeecccCCceee-----cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHH-HHcCCCeecCcccCcc
Q psy3752 194 MSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLGGL 267 (1012)
Q Consensus 194 m~~yi~~~r~g~~ii-----~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~G~ 267 (1012)
+...+-|.+.|--|+ ..-||...|..|.+... .++..++|++.--....++.++. ..++..+ .++..|.
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~---~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~--~~i~~~~ 281 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAM---DQDKPVLIFSLEMPAEQLMMRMLASLSRVDQ--TKIRTGQ 281 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHH---hCCCeEEEEeccCCHHHHHHHHHHhhCCCCH--HHHhcCC
Confidence 444455666664444 67789888777766532 35778999988777777776654 4455443 3566788
Q ss_pred ccCh--HHHHHHHHHHH-HHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeC-------CC--C
Q psy3752 268 LTNF--KTIKTSIQRLK-EMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID-------VG--Y 335 (1012)
Q Consensus 268 lTN~--~~~~~~~~~~~-~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~-------~~--~ 335 (1012)
||+. ..+.....++. ...-...+. ..++--+ +..+..++.+..+|+ ++ ||+| +. .
T Consensus 282 l~~~e~~~~~~a~~~l~~~~~l~I~d~--~~~ti~~---i~~~~r~~~~~~~~~-------~l-vvIDYLql~~~~~~~~ 348 (464)
T PRK08840 282 LDDEDWARISSTMGILMEKKNMYIDDS--SGLTPTE---VRSRARRIAREHGGL-------SM-IMVDYLQLMRVPALSD 348 (464)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEECC--CCCCHHH---HHHHHHHHHHhcCCC-------CE-EEEccHHhcCCCCCCC
Confidence 8753 33333333321 100000111 1233333 334444555544443 33 3344 11 2
Q ss_pred ch-hHHHH--------HHhcCCCeEEEecCCCCCCcceeeccCC
Q psy3752 336 HK-GAVSE--------AIKLNIPIIGVVDTNHSPDGINYVIPGN 370 (1012)
Q Consensus 336 ~~-~ai~E--------a~~l~iP~i~l~Dt~~~~~~i~~~IP~N 370 (1012)
++ ..+.+ |+.+|||||+++--|-+.+.-.-.-|..
T Consensus 349 ~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~l 392 (464)
T PRK08840 349 NRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVN 392 (464)
T ss_pred chHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCch
Confidence 22 33443 4568999999998776654433333443
No 296
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=50.65 E-value=22 Score=30.16 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=32.8
Q ss_pred CceEEEEecCCC-CCchhhhcCCCC-CccEEEeCCEeeccHHHHHHHHh
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYG-QVPILVERDLILYESNIINEYID 47 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~g-kVPvL~ddg~~I~ES~aIl~YL~ 47 (1012)
|+|+.+.++... ..+++....+.. ++|++..+|..+.....+.++-.
T Consensus 25 i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 25 VDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 578777776431 123444545544 89999999999999988887743
No 297
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=48.50 E-value=40 Score=31.90 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=34.8
Q ss_pred CCCEEEEeCCC----CchhHHHHHHhcCCCeEEEecCCCCCC--cceeeccCCCC
Q psy3752 324 IPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPGNDD 372 (1012)
Q Consensus 324 ~P~~~iv~~~~----~~~~ai~Ea~~l~iP~i~l~Dt~~~~~--~i~~~IP~N~~ 372 (1012)
..|++|++... +-..+++.|+..|.|+|+|++...+|- ..|+.++....
T Consensus 47 ~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 47 EKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 56888888755 345677888999999999998765442 35666655544
No 298
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=47.43 E-value=82 Score=32.51 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=16.0
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEE
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l 353 (1012)
.|+++|++.-.-=.+.+++|.+.|||++-+
T Consensus 95 ~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 95 RPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp --SEEEEES----HHHHHH-----S-EEEE
T ss_pred CCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 699999999888889999999999999544
No 299
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=47.36 E-value=94 Score=31.06 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 935 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 935 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
+.|++.++.--..+++.+......+.++...+++.++.. .+-++-....++..+++.++.-++++.+.+..+++|
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i 127 (156)
T CHL00118 52 DERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555555555555443321 233334444555555555555566666655555544
No 300
>PRK10780 periplasmic chaperone; Provisional
Probab=47.06 E-value=1.8e+02 Score=29.36 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=60.5
Q ss_pred CCeEEEeCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHH
Q psy3752 922 GNIIYVSIPPLTKE--RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEI 998 (1012)
Q Consensus 922 ~~~i~v~iP~~t~E--~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~i 998 (1012)
...-.|.+..+-.+ ..+...+...+.+......+...+.+..+...++++++ .+|+++....+++|+.....|-.+.
T Consensus 24 ~KIg~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~ 103 (165)
T PRK10780 24 DKIAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKA 103 (165)
T ss_pred cCeEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555543332 24555677778888888888888888888888887765 5899998888888877776666555
Q ss_pred H---HHHHHHHHhhh
Q psy3752 999 N---QLLINKEKEIL 1010 (1012)
Q Consensus 999 d---~~~~~kekel~ 1010 (1012)
. +-+..++.|++
T Consensus 104 ~~~qq~~~~~~~e~~ 118 (165)
T PRK10780 104 QAFEQDRRRRSNEER 118 (165)
T ss_pred HHHHHHHHHHHHHHH
Confidence 4 23344554443
No 301
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=46.93 E-value=26 Score=26.61 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=28.0
Q ss_pred hhhhhhccc-ccChHHHHHHHHHhcCCHHHHHHHHHH
Q psy3752 393 TVGELRSKT-LAPIMECKKALIEANGKLSKAEEILRI 428 (1012)
Q Consensus 393 ~v~~lr~~t-~~~~~~~k~al~~~~~d~~~a~~~l~~ 428 (1012)
.+..|+... ..+-...+..|.+++||+|.|++.|-+
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 345555554 467788999999999999999988753
No 302
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=46.08 E-value=10 Score=34.17 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy3752 404 PIMECKKALIEANGKLSKAEEILRIKLG 431 (1012)
Q Consensus 404 ~~~~~k~al~~~~~d~~~a~~~l~~~~~ 431 (1012)
.+-||.+|=+|-..+++.|.+.||+||.
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~kGv 89 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRKKGV 89 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5779999999999999999999999986
No 303
>PRK01919 tatB sec-independent translocase; Provisional
Probab=44.80 E-value=1.9e+02 Score=29.27 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 934 KERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 934 ~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
.|+-=++++.+.+..-++|..+.+++.+..+++ ..||.++..+++|+..++....+.+-+..-++++
T Consensus 22 PekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~---------e~dElrk~~~~~e~~~~~v~~si~~~~~~~~~~~ 88 (169)
T PRK01919 22 PERLPRVARTAGALFGRAQRYINDVKAEVSREI---------ELDELRKMKTDFESAARDVENTIHDNLSEHESDL 88 (169)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345556777777777777777777777665543 2366666777777666666666666666666554
No 304
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.10 E-value=51 Score=35.38 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCC-CcceeeccCCCCchhhHHHHhhhhh
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGNDDSAKSIALYTKGIV 385 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~-~~i~~~IP~N~~s~~si~l~~~~l~ 385 (1012)
.+|.+|+..+..+...+.++...|||+|.+ |++.+. ..+.|.-+ |...+..+....|.
T Consensus 60 ~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~~v~~---d~~~~g~~~~~~l~ 118 (270)
T cd06294 60 RVDGFILLYSREDDPIIDYLKEEKFPFVVI-GKPEDDKENITYVDN---DNIQAGYDATEYLI 118 (270)
T ss_pred CcCEEEEecCcCCcHHHHHHHhcCCCEEEE-CCCCCCCCCCCeEEE---CcHHHHHHHHHHHH
Confidence 589999987666667789999999999987 554432 33444443 33455555555444
No 305
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=41.95 E-value=35 Score=34.72 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=38.4
Q ss_pred eeccccccccCCc-CCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcC
Q psy3752 746 ATKVDGIYNSDPN-KCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEG 814 (1012)
Q Consensus 746 lTDVdGVy~~dP~-~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~G 814 (1012)
..|||||+|+.-= .+++...+...+. .|..+...+.+.|+++.|+++.....+...+.-
T Consensus 11 v~d~dGv~tdg~~~~~~~g~~~~~~~~----------~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~ 70 (169)
T TIGR02726 11 ILDVDGVMTDGRIVINDEGIESRNFDI----------KDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEE 70 (169)
T ss_pred EEeCceeeECCeEEEcCCCcEEEEEec----------chHHHHHHHHHCCCEEEEEECCCcHHHHHHHHH
Confidence 5699999986411 1123333333322 345578888899999999998877766666653
No 306
>PLN02372 violaxanthin de-epoxidase
Probab=41.80 E-value=1.1e+02 Score=35.13 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=49.4
Q ss_pred cCcccHHHHHHHHHhcCCCCCcc--cCCC-----eEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3752 897 FEKEMSSIIKKAINEANLGLNPT--IQGN-----IIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKK 968 (1012)
Q Consensus 897 ~d~~~~~~i~~ai~~s~l~~~p~--~~~~-----~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~ 968 (1012)
|+++.++.+++|..+.++.+.-- .|.+ -+-=.+++--+|--+.++|.+..+.++--..++.+|+.....++.
T Consensus 327 lP~~~~p~L~~Aa~kvG~df~~F~~tDNsCgpep~l~~~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 327 LPESIVPELEKAAKKVGRDFSDFVRTDNTCGPEPPLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred CChhhhHHHHHHHHHcCCCHHHheeeCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999888876632 2322 111223333445556777887777888888888888887777766
No 307
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=41.75 E-value=2.2e+02 Score=35.63 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=33.5
Q ss_pred CCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC-CcceeeccCC
Q psy3752 324 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGN 370 (1012)
Q Consensus 324 ~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~-~~i~~~IP~N 370 (1012)
.-|++|++...-+ ..+++.|+..|+|||+|+|.+++. ...|+.+|..
T Consensus 515 ~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~~ 566 (638)
T PRK14101 515 KGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALETD 566 (638)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEcC
Confidence 5688888875433 467788889999999999975543 2356666653
No 308
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=41.61 E-value=55 Score=28.10 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=37.1
Q ss_pred CceEEEEecCCCCC----chhhhcCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy3752 1 MDFEIRDIDLFNKP----DNIFRMNPYGQVPILVERDLILYESNIINEYIDE 48 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~----~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~ 48 (1012)
++|+.+.++..... ..+.+.+....+|++..+|..+.++..+.++..+
T Consensus 25 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 25 VKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 36778888766532 2355677788999999999999999999888754
No 309
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=41.00 E-value=61 Score=40.13 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=55.2
Q ss_pred CCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC--CcceeeccCCCCc---------hhhHHHHhhhhhhh
Q psy3752 323 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDS---------AKSIALYTKGIVDA 387 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~--~~i~~~IP~N~~s---------~~si~l~~~~l~~a 387 (1012)
...|++|++...-+ ..+++.|+..|+|||+|++...+| ...|+.|+.+... ..+.-+++.+|.-.
T Consensus 335 ~~~dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~ 414 (604)
T PRK00331 335 SPKTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALA 414 (604)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcCccchhhhHHHHHHHHHHHHHHHH
Confidence 35688888865533 457788889999999999865444 3467777655322 22222223333322
Q ss_pred hhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHH
Q psy3752 388 FLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEE 424 (1012)
Q Consensus 388 i~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~ 424 (1012)
+.... + ..+.....++.++|.+....++++++
T Consensus 415 ~~~~~--g---~~~~~~~~~~~~~l~~l~~~~~~~~~ 446 (604)
T PRK00331 415 LAKAR--G---TLSAEEEADLVHELRELPALIEQVLD 446 (604)
T ss_pred HHHHc--C---CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21110 0 01122345677777777766777655
No 310
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.36 E-value=1.3e+02 Score=30.92 Aligned_cols=25 Identities=4% Similarity=0.100 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3752 944 IKNITEETKISIRKIRRDSNENLKK 968 (1012)
Q Consensus 944 ~k~~~e~~k~~iR~iR~~~~~~~k~ 968 (1012)
+.+.-+++...+++.|.++.+.+.+
T Consensus 81 A~~~~~eye~~L~~Ar~EA~~ii~~ 105 (181)
T PRK13454 81 AVEAEKAYNKALADARAEAQRIVAE 105 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555444443
No 311
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=40.19 E-value=89 Score=32.82 Aligned_cols=26 Identities=23% Similarity=0.083 Sum_probs=20.1
Q ss_pred cCCEEEEEecChhhHHHHHHHHHHcCC
Q psy3752 230 SKGTLLFVGTKRQARGVIANEAVRAGM 256 (1012)
Q Consensus 230 ~~~~ilfv~t~~~~~~~v~~~a~~~~~ 256 (1012)
+++++|+||..+-+.+-++.+.+ +|+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~-~ga 33 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK-AGA 33 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH-CCC
Confidence 57789999999988877777765 554
No 312
>KOG0100|consensus
Probab=39.57 E-value=2.6e+02 Score=32.11 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=70.0
Q ss_pred cccccceeeEeecCCceEEEeecC--cccHHHHHHHHHhcCC-CCCcccCC--------------------------C--
Q psy3752 875 LTKLLKIANITLFNSHTISIQPFE--KEMSSIIKKAINEANL-GLNPTIQG--------------------------N-- 923 (1012)
Q Consensus 875 ~~~l~~~a~i~~~~~~~l~i~~~d--~~~~~~i~~ai~~s~l-~~~p~~~~--------------------------~-- 923 (1012)
++.=+|+=+..+.+..|+.|++|+ ..+.+.- .-+-+-+| |+.|..-| +
T Consensus 451 PTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn-~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~ 529 (663)
T KOG0100|consen 451 PTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDN-HLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKE 529 (663)
T ss_pred CccccceeeecccCCceEEEEEeeccccccccc-cccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcc
Confidence 344568888888888899999997 5555542 22222233 44443222 1
Q ss_pred eEEEe--CCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhc-----CCCCChhhhHhHHHHHHHHH
Q psy3752 924 IIYVS--IPPLTKERREEIVKLIKNITEETKI-----SIRKIRRDSNENLKKLLK-----NKILSVDNEYRAQYDIQKLT 991 (1012)
Q Consensus 924 ~i~v~--iP~~t~E~R~~l~k~~k~~~e~~k~-----~iR~iR~~~~~~~k~~~k-----~~~~s~D~~~~~~~~iq~~~ 991 (1012)
.|.|+ =-+||+|.-+.+++.|.+.+|+-|. .-||-=..+--.+|..-. .+.+++||...++.-++...
T Consensus 530 kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~ 609 (663)
T KOG0100|consen 530 KITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEAL 609 (663)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHH
Confidence 22222 2369999999999999999987543 345444444334443322 23488888877776666544
No 313
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.50 E-value=55 Score=35.00 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=39.8
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
+.+|.+|+.....+...++++...|||+|.+ |++.+...++|..+-| ..+.......|.+
T Consensus 53 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~d~---~~~g~~~~~~l~~ 112 (266)
T cd06278 53 YRVDGVIVTSGTLSSELAEECRRNGIPVVLI-NRYVDGPGVDAVCSDN---YEAGRLAAELLLA 112 (266)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhcCCCEEEE-CCccCCCCCCEEEECh---HHHHHHHHHHHHH
Confidence 3689899876655667789999999999987 6554444566654433 3444555555543
No 314
>PRK09165 replicative DNA helicase; Provisional
Probab=39.28 E-value=3.2e+02 Score=32.95 Aligned_cols=162 Identities=20% Similarity=0.256 Sum_probs=85.1
Q ss_pred cceeecccCCceee-----cHHHHHHHHHHHHHHHHHH-----------hhcCCEEEEEecChhhHHHHHHH-HHHcCCC
Q psy3752 195 SSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQL-----------GFSKGTLLFVGTKRQARGVIANE-AVRAGMP 257 (1012)
Q Consensus 195 ~~yi~~~r~g~~ii-----~l~~t~~~l~~a~~~i~~~-----------~~~~~~ilfv~t~~~~~~~v~~~-a~~~~~~ 257 (1012)
...+-|.+.|--|+ ..-||...|.-|.+..... +.+|..++|++.--....++.++ |..+|..
T Consensus 208 D~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~ 287 (497)
T PRK09165 208 DSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEIS 287 (497)
T ss_pred hhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCC
Confidence 33444555553333 5678988888887766442 12478899998877776777665 5556654
Q ss_pred eecCcccCccccC--hHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeC---
Q psy3752 258 FIDQRWLGGLLTN--FKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID--- 332 (1012)
Q Consensus 258 ~v~~rw~~G~lTN--~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~--- 332 (1012)
+ .++..|.|++ |..+.....++..+.-...+ ...++-.+ +..+..++.+.+ -+++|| +|
T Consensus 288 ~--~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d--~~~~ti~~---i~~~ir~l~~~~--------~~~lvv-IDyLq 351 (497)
T PRK09165 288 S--SKIRRGKISEEDFEKLVDASQELQKLPLYIDD--TPALSISQ---LRARARRLKRQH--------GLDLLV-VDYLQ 351 (497)
T ss_pred H--HHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeC--CCCCCHHH---HHHHHHHHHHhc--------CCCEEE-EcchH
Confidence 4 3456788884 44444444444321100111 12233333 233333444332 245544 44
Q ss_pred ----CC----Cch-hHHHH--------HHhcCCCeEEEecCCCCCCcceeeccCCCC
Q psy3752 333 ----VG----YHK-GAVSE--------AIKLNIPIIGVVDTNHSPDGINYVIPGNDD 372 (1012)
Q Consensus 333 ----~~----~~~-~ai~E--------a~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~ 372 (1012)
+. .++ ..+.+ |+.++||||+++=-|-..+.-+-.-|...|
T Consensus 352 li~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsD 408 (497)
T PRK09165 352 LIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSD 408 (497)
T ss_pred hccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhh
Confidence 11 222 22332 466899999999776655433333444444
No 315
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.63 E-value=72 Score=30.28 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=33.2
Q ss_pred CCCEEEEeCCCCch----hHHHHHHhcCCCeEEEecCCCCCC--cceeeccCC
Q psy3752 324 IPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPGN 370 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~----~ai~Ea~~l~iP~i~l~Dt~~~~~--~i~~~IP~N 370 (1012)
..|++|+++...+. .+++.|+..|+|+|+|++...+|- ..|+.|+..
T Consensus 60 ~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~ 112 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVS 112 (139)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcC
Confidence 56889988876442 367889999999999998654432 355555543
No 316
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=38.36 E-value=2.8e+02 Score=32.87 Aligned_cols=47 Identities=30% Similarity=0.359 Sum_probs=32.9
Q ss_pred CCEEEEeCCC-CchhHHHHHHhcCCCeEEEecCCCCCCcce--eeccCCC
Q psy3752 325 PDAIFIIDVG-YHKGAVSEAIKLNIPIIGVVDTNHSPDGIN--YVIPGND 371 (1012)
Q Consensus 325 P~~~iv~~~~-~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~--~~IP~N~ 371 (1012)
-|+.+-++.. .-..++.||...|+|++|.=.|-.+++.+. |.+|.|+
T Consensus 348 ~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~g~l~~~~~ 397 (438)
T TIGR02919 348 CDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASENIFEHNE 397 (438)
T ss_pred ccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccCCceecCCC
Confidence 4555555543 667899999999999999988866655443 4455543
No 317
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=38.28 E-value=1.3e+02 Score=33.13 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-C---CChhhhHhHHHHHHHHHHHHHHH
Q psy3752 932 LTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-I---LSVDNEYRAQYDIQKLTDKFILE 997 (1012)
Q Consensus 932 ~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~---~s~D~~~~~~~~iq~~~~~~~~~ 997 (1012)
|++|.|+.+.+.+.+........++....++.+.+.+ .+ . +|+++..+..+..+.+.+++.++
T Consensus 219 L~~e~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~G~~v~~~s~~~~~~~~~~~~~~~~e~~~~ 285 (286)
T PF03480_consen 219 LPDEDQEALDDAADEAEARAREYYEAEDEEALKELEE---NGVTVVELSDEELAAWREAAAPVWEEFFEE 285 (286)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT-EEEEGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CcCEEeCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999999888888777665 33 2 59999999999999998885543
No 318
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=38.21 E-value=44 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=21.2
Q ss_pred HHHHHHhhhcCCCCChhhhHhHHHHH
Q psy3752 962 SNENLKKLLKNKILSVDNEYRAQYDI 987 (1012)
Q Consensus 962 ~~~~~k~~~k~~~~s~D~~~~~~~~i 987 (1012)
.+..++.+..++.||+++..+..++|
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45678888889999999998877765
No 319
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=37.98 E-value=61 Score=34.68 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhh
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 384 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l 384 (1012)
.+|.+|+.....+...+.++...+||+|.+ |+..+...++|..+-| ..+..+....|
T Consensus 59 ~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~d~---~~~~~~a~~~l 115 (268)
T cd06271 59 LVDGVIISRTRPDDPRVALLLERGFPFVTH-GRTELGDPHPWVDFDN---EAAAYQAVRRL 115 (268)
T ss_pred CCCEEEEecCCCCChHHHHHHhcCCCEEEE-CCcCCCCCCCeEeeCc---HHHHHHHHHHH
Confidence 589899876655556788899999999976 6654443455544433 34444444444
No 320
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=37.94 E-value=1.6e+02 Score=29.42 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 947 ITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 947 ~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
.+++.+......+.++...+.+.++.. .+-++-....++..+++.++.-++++.+....+++|
T Consensus 47 ~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i 110 (159)
T PRK13461 47 KADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEA 110 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544444444444444433321 133333444555555666666666666655555444
No 321
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=37.93 E-value=1.6e+02 Score=29.87 Aligned_cols=89 Identities=26% Similarity=0.306 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCC-eecCcccCccccChHHHHHHHHHHHHHHhhhccCcc
Q psy3752 215 YMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMP-FIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293 (1012)
Q Consensus 215 ~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~-~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~ 293 (1012)
..+.-|++++..-.--.|+|-+-|....- .|..+|....-. .-..+|.+ ..+|+.++
T Consensus 22 ~~iedaARlLAQA~vgeG~IYi~G~~Em~--~v~~~Al~g~E~l~~~k~l~~-~~~~~~~l------------------- 79 (172)
T PF10740_consen 22 ESIEDAARLLAQAIVGEGTIYIYGFGEME--AVEAEALYGAEPLPSAKRLSE-DLENFDEL------------------- 79 (172)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEE-GGGG--GGHHHHHCSTT--TTEEE--T-T--------------------------
T ss_pred hhHHHHHHHHHHHHhcCCEEEEEecChHH--HHHHHHHcCCCCCchhhcCcc-cccccccc-------------------
Confidence 36777888888877788899888877643 344444433322 22334442 23333221
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCch-hHHHHHHhc---CCCeEEEe
Q psy3752 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK-GAVSEAIKL---NIPIIGVV 354 (1012)
Q Consensus 294 ~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~-~ai~Ea~~l---~iP~i~l~ 354 (1012)
..-|-|+++.|..+. .|++=|.+| |||++++|
T Consensus 80 -----------------------------t~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 80 -----------------------------TETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp ------------------------------TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred -----------------------------cccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 145668888877665 665555554 99999999
No 322
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=37.22 E-value=4.6e+02 Score=28.82 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCC
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGND 371 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~ 371 (1012)
.||++|+-...-+..-.+-.+..+.+++.|-|...-+-..|+.|=+|-
T Consensus 80 ~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~ 127 (279)
T TIGR03590 80 KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNL 127 (279)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCC
Confidence 699999888776666666555678888888887766667888887774
No 323
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=36.61 E-value=2.6e+02 Score=29.63 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=39.0
Q ss_pred CCCEEEEe--CCCCchhHHHHHHhcCCCeEEEecCC--CCCCcceeeccCCCCchhhHHHHhhhhhhhhhh
Q psy3752 324 IPDAIFII--DVGYHKGAVSEAIKLNIPIIGVVDTN--HSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 390 (1012)
Q Consensus 324 ~P~~~iv~--~~~~~~~ai~Ea~~l~iP~i~l~Dt~--~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~ 390 (1012)
-||.||+. ++..-...+.+|..-|||+|.+ |++ .++....|.=+ | ....-......+.+....
T Consensus 55 ~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~-d~~~~~~~~~~~~v~~-d--~~~~G~~~a~~l~~~~~~ 121 (257)
T PF13407_consen 55 GVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV-DSDEAPDSPRAAYVGT-D--NYEAGKLAAEYLAEKLGA 121 (257)
T ss_dssp TESEEEEESSSTTTTHHHHHHHHHTTSEEEEE-SSTHHTTSTSSEEEEE----HHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEecCCCHHHHHHHHHHHhhcCceEEEE-eccccccccceeeeec-c--HHHHHHHHHHHHHHHhcc
Confidence 59988876 4444568899999999999985 555 34444444444 2 334444455555554443
No 324
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=36.55 E-value=72 Score=34.12 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeecc
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIP 368 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP 368 (1012)
+.+|.+|+.....+...++++...|||+|.+ |++.+...++|..+
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~-~~~~~~~~~~~v~~ 98 (265)
T cd06299 54 QRVDGIIVVPHEQSAEQLEDLLKRGIPVVFV-DREITGSPIPFVTS 98 (265)
T ss_pred cCCCEEEEcCCCCChHHHHHHHhCCCCEEEE-ecccCCCCCCEEEE
Confidence 4688899886665667799999999999876 55443334556544
No 325
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=36.49 E-value=1.7e+02 Score=29.55 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3752 936 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008 (1012)
Q Consensus 936 ~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~keke 1008 (1012)
.|++-++.--..+++.+......+.++...+++..+.. .+-++-....++..+++.++.-.+++.+.+..+.+
T Consensus 53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ 126 (167)
T PRK08475 53 SRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEEL 126 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333345555544444444444444433221 13334444455555555555555555555554443
No 326
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=35.76 E-value=1.8e+02 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=15.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 978 DNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 978 D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
+-....++..+++.++.-.+++.+.+..+++|
T Consensus 78 ~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i 109 (156)
T PRK05759 78 QAKKRAAQIIEEAKAEAEAEAARIKAQAQAEI 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555444443
No 327
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=35.63 E-value=1.7e+02 Score=30.05 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 935 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 935 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
|.|++-+..--..+|+.+......+.++.+++.+.+... .+-++-....++..+++.++-..+++.+.+..+++|
T Consensus 57 ~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I 132 (184)
T PRK13455 57 DKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQI 132 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333355555554444444444444433211 122333333444455555555555555555554444
No 328
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=35.60 E-value=1.9e+02 Score=28.06 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 948 TEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 948 ~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
+++.+...-....++.+.+...+... .+-++-....++..+.+.++..++++.+.+..+.+|
T Consensus 48 Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i 110 (140)
T PRK07353 48 AKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREI 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444332211 133344444555555555555566666555555544
No 329
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=35.48 E-value=1.2e+02 Score=35.24 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=25.6
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCC
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTN 357 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~ 357 (1012)
..||+|+.+.|......++.+..++||++.+ -||
T Consensus 103 ~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v-~td 136 (391)
T PRK13608 103 EKPDLILLTFPTPVMSVLTEQFNINIPVATV-MTD 136 (391)
T ss_pred hCcCEEEECCcHHHHHHHHHhcCCCCCEEEE-eCC
Confidence 3899999988876555666677889999765 344
No 330
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=35.42 E-value=2.3e+02 Score=26.24 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 939 EIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 1006 (1012)
Q Consensus 939 ~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~ke 1006 (1012)
+.++.+|+.=+++...+++.|+++..-+.... ...++..+.+.++--.+.+.++....
T Consensus 3 e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak----------~~A~k~~~eii~eA~~eA~~ile~Ak 60 (103)
T PRK08404 3 DVIKEIVKAEKEAEERIEKAKEEAKKIIRKAK----------EEAKKIEEEIIKKAEEEAQKLIEKKK 60 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777655544332 23344444444444444444444433
No 331
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=35.22 E-value=80 Score=33.74 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=38.9
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhh
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 385 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~ 385 (1012)
..+|.+|+..+..+..+++++...+||+|.+ |++.+...+.|.-. |..++..+....|.
T Consensus 54 ~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~v~~---d~~~~g~~~~~~l~ 112 (267)
T cd06283 54 YQVDGLIVNPTGNNKELYQRLAKNGKPVVLV-DRKIPELGVDTVTL---DNYEAAKEAVDHLI 112 (267)
T ss_pred cCcCEEEEeCCCCChHHHHHHhcCCCCEEEE-cCCCCCCCCCEEEe---ccHHHHHHHHHHHH
Confidence 3689999887766666789999999999997 55544333454432 33445555555553
No 332
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=35.19 E-value=2.6e+02 Score=31.29 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=23.7
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEEecC
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDT 356 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt 356 (1012)
.||+||.. ....+..=|..+|||+|.+.+.
T Consensus 93 ~pDlVi~d---~~~~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 93 NPDLIISD---FEYSTVVAAKLLKIPVICISNQ 122 (321)
T ss_pred CCCEEEEC---CchHHHHHHHhcCCCEEEEecc
Confidence 79998854 4445577899999999999863
No 333
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.10 E-value=1.8e+02 Score=29.58 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 950 ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 950 ~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
+++..+.+.|.++.+-+.. -....++..+.+.++.-.+++.+.+..+.+|
T Consensus 74 e~e~~L~~a~~ea~~ii~~----------A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I 123 (175)
T PRK14472 74 KNRELLAKADAEADKIIRE----------GKEYAEKLRAEITEKAHTEAKKMIASAKEEI 123 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444333 3333444444445555555555555444443
No 334
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=35.04 E-value=1.2e+02 Score=34.89 Aligned_cols=112 Identities=17% Similarity=0.087 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhhcCC-EEEEEecChhhHHHHHHHHHHcCCCeecCcccCccc--cChHHHHHHHHHHHHHHhhhccCc
Q psy3752 216 MYEKAIRYIYQLGFSKG-TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLL--TNFKTIKTSIQRLKEMDLFITNGS 292 (1012)
Q Consensus 216 ~l~~a~~~i~~~~~~~~-~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~l--TN~~~~~~~~~~~~~~~~~~~~~~ 292 (1012)
++.-|..+...+.++|- +|.+++|.......+.... ..--.++.-.++++.. -|+++. ++.++
T Consensus 13 Hv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~-~~~~~~I~~~~~~~~~~~~~~~~~---~~~~~---------- 78 (357)
T COG0707 13 HVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQY-GIEFELIPSGGLRRKGSLKLLKAP---FKLLK---------- 78 (357)
T ss_pred chhHHHHHHHHHHhhCccEEEEecccccceeeecccc-CceEEEEecccccccCcHHHHHHH---HHHHH----------
Confidence 34456677777766665 6889999876654433332 2222345544444322 222221 11111
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCC
Q psy3752 293 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPD 361 (1012)
Q Consensus 293 ~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~ 361 (1012)
-.++..++-+.+ .||+||-+..----.+...|..++||++- ..+|.-|-
T Consensus 79 -----------~~~~a~~il~~~--------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i-hEqn~~~G 127 (357)
T COG0707 79 -----------GVLQARKILKKL--------KPDVVIGTGGYVSGPVGIAAKLLGIPVII-HEQNAVPG 127 (357)
T ss_pred -----------HHHHHHHHHHHc--------CCCEEEecCCccccHHHHHHHhCCCCEEE-EecCCCcc
Confidence 112222333333 89999999999899999999999999964 46666553
No 335
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=35.04 E-value=1e+02 Score=38.11 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=33.7
Q ss_pred CCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC--CcceeeccCC
Q psy3752 323 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGN 370 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~--~~i~~~IP~N 370 (1012)
...|++|++...-+ ..|++.|+..|+|||+|++...+| ...|+.|+.+
T Consensus 337 ~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~ 390 (607)
T TIGR01135 337 DKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTR 390 (607)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEec
Confidence 35788998866533 347788888999999999865444 3456666644
No 336
>PRK06749 replicative DNA helicase; Provisional
Probab=34.95 E-value=2.8e+02 Score=32.80 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=81.6
Q ss_pred eeecccCCceee-----cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHH-cCCCeecCccc-C-ccc
Q psy3752 197 YIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVR-AGMPFIDQRWL-G-GLL 268 (1012)
Q Consensus 197 yi~~~r~g~~ii-----~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~-~~~~~v~~rw~-~-G~l 268 (1012)
.+-|.+.|--|+ ..-||...+..|.+.. .++..++|++.--....++.++... ++..+ .++. | |.|
T Consensus 179 ~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a----~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~~--~~l~~~~~~l 252 (428)
T PRK06749 179 MTCGLQEGDFVVLGARPSMGKTAFALNVGLHAA----KSGAAVGLFSLEMSSKQLLKRMASCVGEVSG--GRLKNPKHRF 252 (428)
T ss_pred HhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHH----hcCCCEEEEEeeCCHHHHHHHHHHhccCCCH--HHHhcCcccC
Confidence 344555554443 6678988888777664 4577899988777666666665544 33332 1222 2 356
Q ss_pred c--ChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCC--------C--Cc
Q psy3752 269 T--NFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDV--------G--YH 336 (1012)
Q Consensus 269 T--N~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~--------~--~~ 336 (1012)
+ .|..+.....++..+.-...+ -..+|-.+ +..+..++++.+++ .+++| |+|- . .+
T Consensus 253 ~~~e~~~~~~a~~~l~~~~i~i~d--~~~~t~~~---I~~~~r~~~~~~~~------~~~lv-vIDyLqli~~~~~~~~~ 320 (428)
T PRK06749 253 AMEDWEKVSKAFAEIGELPLEIYD--NAGVTVQD---IWMQTRKLKRKHGD------KKILI-IVDYLQLITGDPKHKGN 320 (428)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEC--CCCCCHHH---HHHHHHHHHHhcCC------CCcEE-EEeChhhcCCCCCCCCC
Confidence 5 455555555544332111111 11233333 34444455554432 23333 3431 1 12
Q ss_pred h-hHHH--------HHHhcCCCeEEEecCCCCCCcceeeccCCCC
Q psy3752 337 K-GAVS--------EAIKLNIPIIGVVDTNHSPDGINYVIPGNDD 372 (1012)
Q Consensus 337 ~-~ai~--------Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~ 372 (1012)
+ ..+. =|+.+++|||+++--|-+.+.-.-.-|.-+|
T Consensus 321 r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsD 365 (428)
T PRK06749 321 RFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSD 365 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHh
Confidence 2 2222 2567899999999777665443333454444
No 337
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=34.54 E-value=1.5e+02 Score=27.00 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHH
Q psy3752 934 KERREEIVKLIKNITE-ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEI 998 (1012)
Q Consensus 934 ~E~R~~l~k~~k~~~e-~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~i 998 (1012)
.+.+-|+-|+++++-. +++.--++.++.+.+.+.+ +|..|.....++|.+-..+.++..
T Consensus 24 ~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~------ms~~e~~k~~~ev~k~~~~~~~~m 83 (93)
T PF06518_consen 24 PDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSK------MSVEERKKRREEVRKALEKRIKKM 83 (93)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTT------S-HHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999998877 8888888888877665554 588888888888877776655443
No 338
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=34.26 E-value=67 Score=34.53 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=39.1
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
+.+|.+|+..+..+...++++...|||+|.+ |++.+....++. ..|...+.....+.|..
T Consensus 54 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v---~~d~~~~~~~~~~~l~~ 113 (268)
T cd06270 54 RRCDALILHSKALSDDELIELAAQVPPLVLI-NRHIPGLADRCI---WLDNEQGGYLATEHLIE 113 (268)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhCCCCEEEE-eccCCCCCCCeE---EECcHHHHHHHHHHHHH
Confidence 4799999987654544589999999999888 554433333332 24555666666665543
No 339
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=34.09 E-value=90 Score=32.67 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=41.4
Q ss_pred HHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecccc--
Q psy3752 674 FDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG-- 751 (1012)
Q Consensus 674 ~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVdG-- 751 (1012)
...+.+.|++... .++....|...|..|.+|++= +| ...=.--++--=|++|.+|+
T Consensus 102 ~~~a~~~gv~~~~----------~~~~~~~l~~~l~~G~~~lvL-------IS-----~y~~~g~k~PHWV~v~g~d~~~ 159 (207)
T PF11814_consen 102 REEAEQAGVPVHY----------RPLSLADLRAALAAGAIVLVL-------IS-----TYRMDGKKVPHWVVVTGVDDDF 159 (207)
T ss_pred HHHHHHCCCceec----------CCCCHHHHHHHHHCCCEEEEE-------Ee-----ecccCCCCCCeEEEEEEecCCE
Confidence 3446777887432 345667888899999988772 11 00000124556677787777
Q ss_pred ccccCCcCC
Q psy3752 752 IYNSDPNKC 760 (1012)
Q Consensus 752 Vy~~dP~~~ 760 (1012)
||-.||..+
T Consensus 160 vyihDP~~d 168 (207)
T PF11814_consen 160 VYIHDPDVD 168 (207)
T ss_pred EEEeCCCCC
Confidence 889999865
No 340
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=34.00 E-value=53 Score=31.05 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=28.8
Q ss_pred CCCCEEEEeCCC----CchhHHHHHHhcCCCeEEEecCCCCC
Q psy3752 323 IIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP 360 (1012)
Q Consensus 323 ~~P~~~iv~~~~----~~~~ai~Ea~~l~iP~i~l~Dt~~~~ 360 (1012)
...|++|++... +-..++++|+..|+|||+|++...+|
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 367888888644 23457889999999999999976544
No 341
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=33.93 E-value=2e+02 Score=28.90 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3752 982 RAQYDIQKLTDKFILEINQLLINKEKE 1008 (1012)
Q Consensus 982 ~~~~~iq~~~~~~~~~id~~~~~keke 1008 (1012)
..++..+.+.++.-++++.+.+..+++
T Consensus 86 ~a~~~~~~~l~~A~~ea~~~~~~a~~~ 112 (164)
T PRK14473 86 RARAQEAEIIAQARREAEKIKEEARAQ 112 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555444444443
No 342
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=33.64 E-value=2e+02 Score=29.26 Aligned_cols=29 Identities=24% Similarity=0.024 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 981 YRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 981 ~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
...++..+.+.++.-++++.+.+..+.+|
T Consensus 93 ~ea~~~~~~~~~~A~~ea~~~~~~a~~~i 121 (173)
T PRK13460 93 SDALKLKNKLLEETNNEVKAQKDQAVKEI 121 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555544
No 343
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=33.63 E-value=2e+02 Score=29.04 Aligned_cols=75 Identities=8% Similarity=0.049 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 935 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 935 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
|.|++-+..-=..+|+.|...-..+.++.+.+....... .|-++-....++..+.+.++.-++.+.+.+..+.+|
T Consensus 40 e~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I 115 (167)
T PRK14475 40 DAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKI 115 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333333355555544444444444444433221 133333344455555555555556666666555544
No 344
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=33.61 E-value=1.2e+02 Score=33.86 Aligned_cols=62 Identities=31% Similarity=0.342 Sum_probs=41.5
Q ss_pred CCCCEEEE--eCCCCchhHHHHHHhcCCCeEEEecCCCCC--CcceeeccCCCCchhhHHHHhhhhhhhh
Q psy3752 323 IIPDAIFI--IDVGYHKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAKSIALYTKGIVDAF 388 (1012)
Q Consensus 323 ~~P~~~iv--~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~--~~i~~~IP~N~~s~~si~l~~~~l~~ai 388 (1012)
+-||.|++ .|+..-..++++|..-|||||++ |++.+. ....|.-. |+..+=.+..+.+.+..
T Consensus 90 ~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~-d~~~~~~~~~~~~vg~---dn~~~G~~~a~~l~~~~ 155 (322)
T COG1879 90 QGVDAIIINPVDPDALTPAVKKAKAAGIPVVTV-DSDIPGPGDRVAYVGS---DNYKAGRLAAEYLAKAL 155 (322)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEE-ecCCCCCCceeEEEec---CcHHHHHHHHHHHHHHh
Confidence 47999999 57888889999999999999988 444433 23444444 33444444445554444
No 345
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=33.47 E-value=60 Score=30.60 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=25.3
Q ss_pred ccChHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy3752 402 LAPIMECKKALIEANGKLSKAEEILRIKL 430 (1012)
Q Consensus 402 ~~~~~~~k~al~~~~~d~~~a~~~l~~~~ 430 (1012)
+.+-.+..+||.+++ |+-+|.++||.++
T Consensus 125 ~v~~eeAr~aleeag-Dl~~A~k~l~~~~ 152 (153)
T COG4008 125 FVTPEEAREALEEAG-DLRTAMKILRMKS 152 (153)
T ss_pred cCCHHHHHHHHHHcC-CHHHHHHHHHHhc
Confidence 377889999999999 9999999999875
No 346
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.98 E-value=77 Score=29.97 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=32.5
Q ss_pred CCCCEEEEeCCC----CchhHHHHHHhcCCCeEEEecCCCCCC--cceeecc
Q psy3752 323 IIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 368 (1012)
Q Consensus 323 ~~P~~~iv~~~~----~~~~ai~Ea~~l~iP~i~l~Dt~~~~~--~i~~~IP 368 (1012)
..-|++|++.-. +-..+++.|+..|+|||+|++....|- .-|+.|+
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~ 97 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLD 97 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEE
Confidence 456888888644 334688899999999999999654332 3555553
No 347
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.93 E-value=2e+02 Score=30.24 Aligned_cols=20 Identities=15% Similarity=0.022 Sum_probs=8.2
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q psy3752 981 YRAQYDIQKLTDKFILEINQ 1000 (1012)
Q Consensus 981 ~~~~~~iq~~~~~~~~~id~ 1000 (1012)
..++++.+++..+...+++.
T Consensus 136 ~~A~~eae~ii~~A~~~Ie~ 155 (205)
T PRK06231 136 KEANRQANLIIFQARQEIEK 155 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 348
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=32.84 E-value=1.6e+02 Score=32.38 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=24.4
Q ss_pred CCCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCC
Q psy3752 323 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTN 357 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~ 357 (1012)
+.+|.+|+.....+ ..+++++...|||+|.+ |++
T Consensus 55 ~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~-~~~ 90 (302)
T TIGR02637 55 QKVDAIAISANDPDALVPALKKAMKRGIKVVTW-DSG 90 (302)
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEe-CCC
Confidence 36899888754322 35688899999999976 444
No 349
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.79 E-value=51 Score=31.19 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=32.8
Q ss_pred CCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCCC----cceeeccCCCCc
Q psy3752 325 PDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD----GINYVIPGNDDS 373 (1012)
Q Consensus 325 P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~~----~i~~~IP~N~~s 373 (1012)
=|++|++....+ ...+++|++.|.|||+|++...+|- .+.+.+|.++..
T Consensus 54 ~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 54 DDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPTGEES 110 (131)
T ss_dssp TEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEESSCGS
T ss_pred cceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecCCCcc
Confidence 367777764433 3567888999999999998765442 245566666554
No 350
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=32.77 E-value=2.3e+02 Score=28.47 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 930 PPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 1005 (1012)
Q Consensus 930 P~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~k 1005 (1012)
.+||+|-.++|......+- ..|.+..+.++.....+.+||.-....-++=|...+.-+.+++..++..
T Consensus 6 ~~lT~eg~~~L~~EL~~L~--------~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 6 KGLAPAARDHLEAELARLR--------ARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred CccCHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3589999998887776652 2355555666666667789999999988899999999999999988753
No 351
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.60 E-value=43 Score=36.43 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=28.5
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCC
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHS 359 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~ 359 (1012)
--+++|.+.-..--.|-.=-.++|||+|||+|-|||
T Consensus 266 ~~~lvvTvGDDTT~vagdIl~RfgipiiGItDgD~D 301 (367)
T COG4069 266 GAGLVVTVGDDTTEVAGDILYRFGIPIIGITDGDCD 301 (367)
T ss_pred cCceEEEEcCcchhHHHHHHHhcCCcEEecccCChH
Confidence 345777776666666666678999999999999997
No 352
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=32.57 E-value=2.1e+02 Score=29.05 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 933 TKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 933 t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
=++|++.+.+.... +++.+...-....++..++.+..+.. .+-++-....++..+.+.++.-++++.+.+..+.+|
T Consensus 48 l~~R~~~I~~~l~~-A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i 124 (174)
T PRK07352 48 LEERREAILQALKE-AEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADL 124 (174)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454444433332 44444443334444433333332211 122333334455555555555555555555554443
No 353
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=32.36 E-value=39 Score=22.84 Aligned_cols=17 Identities=41% Similarity=0.173 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhh--hhhhh
Q psy3752 419 LSKAEEILRIKL--GKKIL 435 (1012)
Q Consensus 419 ~~~a~~~l~~~~--~~~a~ 435 (1012)
+.+|-+||++|| ..||+
T Consensus 6 ~k~~~~wlkkkgpgi~kaa 24 (29)
T PF07442_consen 6 LKKAGEWLKKKGPGILKAA 24 (29)
T ss_pred HHHHHHHHHhcCchHHHHH
Confidence 468899999996 45554
No 354
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=32.09 E-value=1.1e+02 Score=26.26 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=34.7
Q ss_pred eEEEEecCCCCCc----hhhhcCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy3752 3 FEIRDIDLFNKPD----NIFRMNPYGQVPILVERDLILYESNIINEYIDE 48 (1012)
Q Consensus 3 ye~~~Vd~~~~~~----~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~ 48 (1012)
|+.+.++..+..+ .+.+......+|++..+|..+..+..+.++..+
T Consensus 28 ~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 28 YEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 7778887654332 245566778899999999999999888887654
No 355
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=32.08 E-value=23 Score=28.77 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=26.5
Q ss_pred CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEee
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLIL 36 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I 36 (1012)
++|+.+.++... ..+++.+.....++|++..||..|
T Consensus 24 i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 24 IPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred CeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 467777777653 345666677889999999988764
No 356
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=32.07 E-value=1.1e+02 Score=32.71 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=39.0
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
+.+|.+++.....+...++++...|+|+|.+ |+..+...+.|... |...+.+.....|.+
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~ 113 (264)
T cd06274 54 RQVDALIVAGSLPPDDPYYLCQKAGLPVVAL-DRPGDPSRFPSVVS---DNRDGAAELTRELLA 113 (264)
T ss_pred cCCCEEEEcCCCCchHHHHHHHhcCCCEEEe-cCccCCCCCCEEEE---ccHHHHHHHHHHHHH
Confidence 3689999887665555588999999999888 66554334555443 344555555554443
No 357
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=32.06 E-value=75 Score=34.08 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
..|.+|++.+..+...++++...|||+|.+ |+..+...+.|... |...+.......|.+
T Consensus 55 ~vdgiii~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~v~~---d~~~~~~~~~~~l~~ 113 (268)
T cd06273 55 GVDGLALIGLDHSPALLDLLARRGVPYVAT-WNYSPDSPYPCVGF---DNREAGRLAARHLIA 113 (268)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-cCCCCCCCCCEEEe---ChHHHHHHHHHHHHH
Confidence 589999988777778899999999999987 44433333555443 344555555555543
No 358
>PRK05595 replicative DNA helicase; Provisional
Probab=32.06 E-value=3.4e+02 Score=32.21 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=80.2
Q ss_pred CCcceeecccCCceee-----cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHH-HHHcCCCeecCcccCc
Q psy3752 193 KMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE-AVRAGMPFIDQRWLGG 266 (1012)
Q Consensus 193 ~m~~yi~~~r~g~~ii-----~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~-a~~~~~~~v~~rw~~G 266 (1012)
.+...+-|.+.|-.++ ..-||...+..|++.. .++|..++|++.--....++.++ |..++..+- ++..|
T Consensus 190 ~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a---~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~--~~~~~ 264 (444)
T PRK05595 190 ELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAA---LREGKSVAIFSLEMSKEQLAYKLLCSEANVDML--RLRTG 264 (444)
T ss_pred HHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHH---HHcCCcEEEEecCCCHHHHHHHHHHHhcCCCHH--HHhcC
Confidence 3444455667665554 6779988887776643 14678899998876666666554 444555442 34467
Q ss_pred cccC--hHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeC------CC---C
Q psy3752 267 LLTN--FKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID------VG---Y 335 (1012)
Q Consensus 267 ~lTN--~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~------~~---~ 335 (1012)
.|++ |..+.....++....-...+. ..++-. .+..+..++.+.. -+++||| | .. .
T Consensus 265 ~l~~~e~~~~~~~~~~l~~~~l~i~d~--~~~t~~---~i~~~~r~~~~~~--------~~~~vvI-Dylql~~~~~~~~ 330 (444)
T PRK05595 265 NLEDKDWENIARASGPLAAAKIFIDDT--AGVSVM---EMRSKCRRLKIEH--------GIDMILI-DYLQLMSGGKGSE 330 (444)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECC--CCCCHH---HHHHHHHHHHHhc--------CCCEEEE-eHHHhccCCCCCc
Confidence 7764 444444444433211011111 122222 2333333443322 2565543 3 11 1
Q ss_pred ch-hHHHH--------HHhcCCCeEEEecCCCCCC
Q psy3752 336 HK-GAVSE--------AIKLNIPIIGVVDTNHSPD 361 (1012)
Q Consensus 336 ~~-~ai~E--------a~~l~iP~i~l~Dt~~~~~ 361 (1012)
++ ..+.+ |+.++||||+++-.|-+++
T Consensus 331 ~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e 365 (444)
T PRK05595 331 SRQQEVSEISRSIKALAKEMECPVIALSQLSRAPE 365 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchh
Confidence 22 22222 6779999999998887654
No 359
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=31.86 E-value=57 Score=34.44 Aligned_cols=28 Identities=7% Similarity=-0.052 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCcEEEEecCCchhHHHHh
Q psy3752 785 TAFSFCRDQKLPIRVFSIIKSGALKRVI 812 (1012)
Q Consensus 785 ~aa~~a~~~gi~v~I~~g~~~~~i~~~l 812 (1012)
.|+..+.+.|++++|++|+....+..++
T Consensus 27 ~al~~l~~~G~~~~iaTGR~~~~~~~~~ 54 (230)
T PRK01158 27 EAIRKAEKLGIPVILATGNVLCFARAAA 54 (230)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence 3666677889999999999887776543
No 360
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=31.77 E-value=49 Score=31.25 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=36.3
Q ss_pred CCCCEEEEeCCCC----chhHHHHHHhcCCCeEEEecCCCCCC-------cceeeccCCCCchhh
Q psy3752 323 IIPDAIFIIDVGY----HKGAVSEAIKLNIPIIGVVDTNHSPD-------GINYVIPGNDDSAKS 376 (1012)
Q Consensus 323 ~~P~~~iv~~~~~----~~~ai~Ea~~l~iP~i~l~Dt~~~~~-------~i~~~IP~N~~s~~s 376 (1012)
...|++|++...- -..+++.|+..|+|+|+|++ +++.. ...+++|.+..++.|
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~-~~~l~~~~~~~~~~~~~~p~~~~~r~s 105 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITS-GGKLLEMAREHGVPVIIIPKGLQPRAA 105 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeC-CchHHHHHHHcCCcEEECCCCCCCcee
Confidence 3678899887653 34567788999999999995 33222 134777887766544
No 361
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=31.77 E-value=2.2e+02 Score=29.95 Aligned_cols=61 Identities=5% Similarity=-0.017 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 946 NITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 1006 (1012)
Q Consensus 946 ~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~ke 1006 (1012)
+..++++..+.+.|.++.+-+...++.. ...+.....++++++++..+-.++|...-....
T Consensus 105 ~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~ 166 (204)
T PRK09174 105 AAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAM 166 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555544443322211 123334444445555555444444444433333
No 362
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=31.74 E-value=1.1e+02 Score=32.36 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=37.5
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhh
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 385 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~ 385 (1012)
+.+|.+++.....+...++++...|||+|++ |+..+...+.|.-+ |...+..+....|.
T Consensus 54 ~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~-~~~~~~~~~~~v~~---d~~~~g~~~~~~l~ 112 (264)
T cd06267 54 RRVDGIILAPSRLDDELLEELAALGIPVVLV-DRPLDGLGVDSVGI---DNRAGAYLAVEHLI 112 (264)
T ss_pred cCcCEEEEecCCcchHHHHHHHHcCCCEEEe-cccccCCCCCEEee---ccHHHHHHHHHHHH
Confidence 3689999887665555589999999999997 44433233444322 33445555555443
No 363
>PRK05748 replicative DNA helicase; Provisional
Probab=31.59 E-value=3.4e+02 Score=32.21 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHH-HHcCCCeecCcccCccccCh--HHHHHHHHHH
Q psy3752 209 NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLGGLLTNF--KTIKTSIQRL 281 (1012)
Q Consensus 209 ~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~G~lTN~--~~~~~~~~~~ 281 (1012)
..-||...+.-|++... ..|..++|++.--....++.++. ..++..+ .++..|.|++. ..+...+..+
T Consensus 213 g~GKT~~al~ia~~~a~---~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~--~~i~~~~l~~~e~~~~~~a~~~l 283 (448)
T PRK05748 213 SVGKTAFALNIAQNVAT---KTDKNVAIFSLEMGAESLVMRMLCAEGNIDA--QRLRTGQLTDDDWPKLTIAMGSL 283 (448)
T ss_pred CCCchHHHHHHHHHHHH---hCCCeEEEEeCCCCHHHHHHHHHHHhcCCCH--HHhhcCCCCHHHHHHHHHHHHHH
Confidence 45678777766655421 35788999998777777777774 4444332 23556777753 3444444443
No 364
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=30.85 E-value=73 Score=27.89 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=29.5
Q ss_pred CceEEEEecCCC--CCchhh-hcCCCCCccEEEeCCEeeccHHHHHHH
Q psy3752 1 MDFEIRDIDLFN--KPDNIF-RMNPYGQVPILVERDLILYESNIINEY 45 (1012)
Q Consensus 1 I~ye~~~Vd~~~--~~~~~~-~inP~gkVPvL~ddg~~I~ES~aIl~Y 45 (1012)
++|+.+.++-.. ...++. ..++..+||++..||..+.-+...-++
T Consensus 26 ~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 26 VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHH
Confidence 467777776555 223444 455999999999999777654444443
No 365
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=30.80 E-value=5.2e+02 Score=27.27 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=57.5
Q ss_pred cCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHH
Q psy3752 230 SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQM 309 (1012)
Q Consensus 230 ~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~ 309 (1012)
+++++|+||....+.+=++.+++....-.|...=..=-|.+|....+ ..++ .+.|
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~----i~~~-----~~~~---------------- 65 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGK----IKWI-----EREF---------------- 65 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcC----cchh-----hccc----------------
Confidence 67899999999998877777766554444332211212222221100 0000 0111
Q ss_pred HHHhhhcCccCCCCCCCEEEEe--CCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCC
Q psy3752 310 KLNRVIGGIKNMNIIPDAIFII--DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGN 370 (1012)
Q Consensus 310 kl~~~~~g~~~~~~~P~~~iv~--~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N 370 (1012)
.. ..+.. ++++|+. |+.-|....+.|...+||+=. =.+|++-|+.+|+.
T Consensus 66 ------~~-~~~~~-~~lviaAt~d~~ln~~i~~~a~~~~i~vNv----~D~p~~~~f~~Pa~ 116 (210)
T COG1648 66 ------DA-EDLDD-AFLVIAATDDEELNERIAKAARERRILVNV----VDDPELCDFIFPAI 116 (210)
T ss_pred ------Ch-hhhcC-ceEEEEeCCCHHHHHHHHHHHHHhCCceec----cCCcccCceeccee
Confidence 00 01122 7777775 556788899999999999833 33455556666654
No 366
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=30.71 E-value=1.2e+02 Score=38.22 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=55.8
Q ss_pred CCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC--CcceeeccCCC---Cch------hhHHHHhhhhhhhh
Q psy3752 324 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGND---DSA------KSIALYTKGIVDAF 388 (1012)
Q Consensus 324 ~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~--~~i~~~IP~N~---~s~------~si~l~~~~l~~ai 388 (1012)
.-+++|++...-+ -.|++.|+..|.|||+|++...+| +..||.|+.+. .+. .+--+++.+++-.+
T Consensus 401 ~~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~ag~E~~va~Tks~tsql~~l~llal~l 480 (670)
T PTZ00394 401 RDDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTSQVVVLTLVALLL 480 (670)
T ss_pred CCCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEEecccccccccccHhHHHHHHHHHHHHHHH
Confidence 4578888865533 357888999999999998865544 45677776432 121 11111122222221
Q ss_pred hhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752 389 LDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 429 (1012)
Q Consensus 389 ~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~ 429 (1012)
.. ....+ .....++.++|.+...-++++++|.++.
T Consensus 481 a~--~~~~~----~~~~~~l~~~l~~lp~~i~~~l~~~~~~ 515 (670)
T PTZ00394 481 SS--DSVRL----QERRNEIIRGLAELPAAISECLKITHDP 515 (670)
T ss_pred HH--hcCch----HHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 11 11111 1123456667777777788887765543
No 367
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=30.59 E-value=2.4e+02 Score=28.26 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3752 984 QYDIQKLTDKFILEINQLLINKEKE 1008 (1012)
Q Consensus 984 ~~~iq~~~~~~~~~id~~~~~keke 1008 (1012)
++..+.+.++.-++++.+.+..+.+
T Consensus 88 ~~~~~~~~~~A~~ea~~~~~~a~~~ 112 (164)
T PRK14471 88 EKMIADAKEEAQVEGDKMIEQAKAS 112 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 368
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=30.55 E-value=4.7e+02 Score=26.20 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy3752 944 IKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 1003 (1012)
Q Consensus 944 ~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~ 1003 (1012)
..+...++|...+.||.++.+++..- .+.+.+.++.++-++.++-++++..+.+
T Consensus 67 ye~~L~~Ar~eA~~I~~e~~~~~~a~------~~~~~~~~ea~L~~~~~~~~~~~~~~~~ 120 (155)
T PRK06569 67 YNEEIDKTNTEIDRLKKEKIDSLESE------FLIKKKNLEQDLKNSINQNIEDINLAAK 120 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556666666665555432 4667777888888888777777666554
No 369
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=30.18 E-value=2.5e+02 Score=28.60 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy3752 948 TEETKISIRKIRRDSNENLKK 968 (1012)
Q Consensus 948 ~e~~k~~iR~iR~~~~~~~k~ 968 (1012)
.++++..+++.|.++.+-+..
T Consensus 72 ~~e~e~~l~~a~~ea~~ii~~ 92 (173)
T PRK13453 72 EEENKQKLKETQEEVQKILED 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666555554443
No 370
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=29.93 E-value=1.7e+02 Score=27.82 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3752 938 EEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008 (1012)
Q Consensus 938 ~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~keke 1008 (1012)
++..+.+....+++...+.+.|.++.+-++...... .+-+.-....+++++.+.++...+++..-+.-.++
T Consensus 43 ~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~ 114 (132)
T PF00430_consen 43 EELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKE 114 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666677777776655554433221 12233344455555555555555555544444433
No 371
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=29.61 E-value=46 Score=33.16 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=52.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceee-EeecCCceEEEeecCcccHHHHHHHHHh
Q psy3752 833 KKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIAN-ITLFNSHTISIQPFEKEMSSIIKKAINE 911 (1012)
Q Consensus 833 ~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~-i~~~~~~~l~i~~~d~~~~~~i~~ai~~ 911 (1012)
..+-+-+++...+-|...|.+= ..++..||-=.++. ..-..+-| |.++ .=-|....|.|.|+|.+
T Consensus 49 ~a~~d~kl~~v~diL~~kl~KR---~i~~k~ld~~~~e~----~sG~~vrq~i~lk-------~GI~~e~AKkIvK~IKd 114 (161)
T PRK05412 49 TAESDFQLKQVKDILRSKLIKR---GIDLKALDYGKVEK----ASGKTVKQEVKLK-------QGIDQELAKKIVKLIKD 114 (161)
T ss_pred EeCCHHHHHHHHHHHHHHHHHc---CCCHHHcCCCCccc----cCCCEEEEEEehh-------hccCHHHHHHHHHHHHh
Confidence 3455667777888887766542 23455555322211 11111111 1112 33478889999999999
Q ss_pred cCCCCCcccCCCeEEEeC
Q psy3752 912 ANLGLNPTIQGNIIYVSI 929 (1012)
Q Consensus 912 s~l~~~p~~~~~~i~v~i 929 (1012)
+.+-++++.+|+.+||+=
T Consensus 115 ~klKVqa~IQGd~vRVtg 132 (161)
T PRK05412 115 SKLKVQAQIQGDQVRVTG 132 (161)
T ss_pred cCCceeEEecCcEEEEec
Confidence 999999999999999863
No 372
>PRK10976 putative hydrolase; Provisional
Probab=29.50 E-value=68 Score=34.87 Aligned_cols=29 Identities=0% Similarity=-0.015 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCcEEEEecCCchhHHHHhc
Q psy3752 785 TAFSFCRDQKLPIRVFSIIKSGALKRVIE 813 (1012)
Q Consensus 785 ~aa~~a~~~gi~v~I~~g~~~~~i~~~l~ 813 (1012)
.|+..+.+.|+.++|++|+....+..++.
T Consensus 26 ~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 54 (266)
T PRK10976 26 ETLKLLTARGIHFVFATGRHHVDVGQIRD 54 (266)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 46777888999999999998887766543
No 373
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=29.29 E-value=1.9e+02 Score=34.31 Aligned_cols=74 Identities=7% Similarity=0.088 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 936 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 936 ~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
.|++-++.--..+|+++......+.++.+.+.+.+++. .|-++-....++..+++.++--.+++.+.+..+++|
T Consensus 32 ~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~I 106 (445)
T PRK13428 32 ARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQV 106 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433334455566666555555555555443322 233444444555555555555555555555544443
No 374
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=28.90 E-value=2.8e+02 Score=29.75 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=35.1
Q ss_pred CCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhh
Q psy3752 324 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDA 387 (1012)
Q Consensus 324 ~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~a 387 (1012)
.+|.+|+.....+ ..++.++...+||+|.+ |+..+.....|.-+ |...+.......|.+.
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~~ 118 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNV-NDKLIPNATAFVGT---DNKANGVRGAEWIIDK 118 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEE-CCCCCCccceEEec---CcHHHHHHHHHHHHHH
Confidence 5788877533222 34678889999999965 65544334445433 3344445555555444
No 375
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=28.85 E-value=3.1e+02 Score=27.49 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 944 IKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 1006 (1012)
Q Consensus 944 ~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~ke 1006 (1012)
+.++.++++..++..|+++.+-++.. ....++..+++.++-..+++.+.+..+
T Consensus 54 A~~l~~e~e~~L~~Ar~EA~~Ii~~A----------~~~a~~~~~ea~~eA~~ea~r~~~~A~ 106 (154)
T PRK06568 54 AALLFEQTNAQIKKLETLRSQMIEES----------NEVTKKIIQEKTKEIEEFLEHKKSDAI 106 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444454444433333 233444455555555555555444433
No 376
>PTZ00174 phosphomannomutase; Provisional
Probab=28.80 E-value=70 Score=34.54 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCcEEEEecCCchhHHHHhc
Q psy3752 785 TAFSFCRDQKLPIRVFSIIKSGALKRVIE 813 (1012)
Q Consensus 785 ~aa~~a~~~gi~v~I~~g~~~~~i~~~l~ 813 (1012)
.|+..+.+.|+.++|++|+....+...+.
T Consensus 29 ~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 29 DTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 36777888999999999999888877664
No 377
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=28.74 E-value=1.9e+02 Score=30.03 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCCCEEEEe--CCCCc-hhHHHHHHh-cCCCeEEEecCCCCCCcceeeccCC-----CCchhhHHHHhhhhhhhhhhhhh
Q psy3752 323 IIPDAIFII--DVGYH-KGAVSEAIK-LNIPIIGVVDTNHSPDGINYVIPGN-----DDSAKSIALYTKGIVDAFLDAKT 393 (1012)
Q Consensus 323 ~~P~~~iv~--~~~~~-~~ai~Ea~~-l~iP~i~l~Dt~~~~~~i~~~IP~N-----~~s~~si~l~~~~l~~ai~~g~~ 393 (1012)
..||+||+- +|..+ .-++..|+. ..-|+|+|+|.+. |..+.-.|=.- -++.....++ -.|.-|+.....
T Consensus 49 ~~pDvVildie~p~rd~~e~~~~~~~~~~~piv~lt~~s~-p~~i~~a~~~Gv~ayivkpi~~~rl~-p~L~vA~srf~~ 126 (194)
T COG3707 49 LQPDVVILDIEMPRRDIIEALLLASENVARPIVALTAYSD-PALIEAAIEAGVMAYIVKPLDESRLL-PILDVAVSRFEE 126 (194)
T ss_pred cCCCEEEEecCCCCccHHHHHHHhhcCCCCCEEEEEccCC-hHHHHHHHHcCCeEEEecCcchhhhh-HHHHHHHHHHHH
Confidence 389999985 45554 333444444 5778999988653 33322111110 1222333332 223334444444
Q ss_pred hhhhhcc---------cccChHHHHHHHHHhcC-CHHHHHHHHHHhhh
Q psy3752 394 VGELRSK---------TLAPIMECKKALIEANG-KLSKAEEILRIKLG 431 (1012)
Q Consensus 394 v~~lr~~---------t~~~~~~~k~al~~~~~-d~~~a~~~l~~~~~ 431 (1012)
..+||.+ +-.-+...|-=|.+-.| +-+.|..+||+.-.
T Consensus 127 ~~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 127 RRALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4444332 23456667777776554 99999999998743
No 378
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.65 E-value=1.7e+02 Score=32.09 Aligned_cols=74 Identities=9% Similarity=0.071 Sum_probs=58.6
Q ss_pred ceeeEeecCCceEEEeecCcccHHHHHHHHHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3752 880 KIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 953 (1012)
Q Consensus 880 ~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~ 953 (1012)
+-.|+-+.+|+...-.++++.....+.++..+.++.+.+..-.....+++-.+.+|.|+.-++..++..+.|+.
T Consensus 26 ~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~i~~A~~ 99 (274)
T TIGR00587 26 TAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEELKRCEL 99 (274)
T ss_pred CEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44677888999888888888889899888888888776654444344888899999999999988888777654
No 379
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=28.63 E-value=2.7e+02 Score=28.64 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 983 AQYDIQKLTDKFILEINQLLINKEK 1007 (1012)
Q Consensus 983 ~~~~iq~~~~~~~~~id~~~~~kek 1007 (1012)
.++..+++.++.-++++.+.+..+.
T Consensus 103 ae~~~~~il~~A~~ea~~~~~~a~~ 127 (184)
T CHL00019 103 IEREKENLINQAKEDLERLENYKNE 127 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 380
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=28.55 E-value=2.7e+02 Score=31.89 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCC
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNH 358 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~ 358 (1012)
.||+|+-+.--..-.++.-|..+++|++-. +.|+
T Consensus 91 kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~-e~n~ 124 (352)
T PRK12446 91 KPDVIFSKGGFVSVPVVIGGWLNRVPVLLH-ESDM 124 (352)
T ss_pred CCCEEEecCchhhHHHHHHHHHcCCCEEEE-CCCC
Confidence 799999887777777899999999999654 4443
No 381
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=28.48 E-value=2.4e+02 Score=30.26 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=38.1
Q ss_pred CCCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCCC-CCcceeeccCCCCchhhHHHHhhhhhhhh
Q psy3752 323 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHS-PDGINYVIPGNDDSAKSIALYTKGIVDAF 388 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~~-~~~i~~~IP~N~~s~~si~l~~~~l~~ai 388 (1012)
+.+|.+|+.....+ ...++++.. +||+|.+ |.+.+ ...+.|.-. |...+-......|.+.+
T Consensus 54 ~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~l~~~~ 117 (271)
T cd06314 54 EGVDGIAISPIDPKAVIPALNKAAA-GIKLITT-DSDAPDSGRYVYIGT---DNYAAGRTAGEIMKKAL 117 (271)
T ss_pred cCCCEEEEecCChhHhHHHHHHHhc-CCCEEEe-cCCCCccceeEEEcc---ChHHHHHHHHHHHHHHc
Confidence 46898888754332 467888888 9999987 44432 233455432 34556666666665543
No 382
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=28.41 E-value=2.1e+02 Score=33.17 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=23.0
Q ss_pred CCCEEEEeCCCC-chhHHHHHHhcCCCeEEEe
Q psy3752 324 IPDAIFIIDVGY-HKGAVSEAIKLNIPIIGVV 354 (1012)
Q Consensus 324 ~P~~~iv~~~~~-~~~ai~Ea~~l~iP~i~l~ 354 (1012)
.||+||.+|-.. +-...+-|+.+|||++-.+
T Consensus 89 kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i 120 (385)
T TIGR00215 89 KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI 120 (385)
T ss_pred CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe
Confidence 799999999422 3335568999999998443
No 383
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=28.30 E-value=1.2e+02 Score=32.79 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=37.7
Q ss_pred CCCCEEEEeCCCCchh-HHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhh
Q psy3752 323 IIPDAIFIIDVGYHKG-AVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAF 388 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~-ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai 388 (1012)
..||.+|+.....+.. .+.++...|||+|.+-+...++..+.|.- .|...+-++....|.+..
T Consensus 56 ~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~V~---~d~~~~g~~~~~~l~~~g 119 (268)
T cd06306 56 WGADAILLGAVSPDGLNEILQQVAASIPVIALVNDINSPDITAKVG---VSWYEMGYQAGEYLAQRH 119 (268)
T ss_pred cCCCEEEEcCCChhhHHHHHHHHHCCCCEEEeccCCCCcceeEEec---CChHHHHHHHHHHHHHHh
Confidence 3799999875444332 58999999999998832222232234432 234455555656555544
No 384
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.19 E-value=4.4e+02 Score=26.00 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=51.7
Q ss_pred CCeEEEeCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHH
Q psy3752 922 GNIIYVSIPPLTKER--REEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEI 998 (1012)
Q Consensus 922 ~~~i~v~iP~~t~E~--R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~i 998 (1012)
...-.|.+..+=.++ .+...+..++..+.....+...+.+..+..+++++.+ .+|+++....+.++++...++-...
T Consensus 17 ~kIa~Vd~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~ 96 (158)
T PF03938_consen 17 PKIAVVDVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQ 96 (158)
T ss_dssp -CEEEE-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEeeHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333 3556667777788888888888888888777776654 5899999888888887776666544
Q ss_pred HH
Q psy3752 999 NQ 1000 (1012)
Q Consensus 999 d~ 1000 (1012)
..
T Consensus 97 ~~ 98 (158)
T PF03938_consen 97 QQ 98 (158)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 385
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=28.18 E-value=1e+02 Score=33.25 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=30.8
Q ss_pred CCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCCCCCcceeeccCC
Q psy3752 324 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGN 370 (1012)
Q Consensus 324 ~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N 370 (1012)
.+|.+|+.....+ ...+.++...|||+|.+ |+..+...+.+.-+-|
T Consensus 60 ~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~-~~~~~~~~~~~v~~d~ 107 (272)
T cd06300 60 GVDAIIINPASPTALNPVIEEACEAGIPVVSF-DGTVTTPCAYNVNEDQ 107 (272)
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-ecCCCCCceeEecCCH
Confidence 7999999765543 45688999999999998 4443333455544433
No 386
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=28.17 E-value=1.3e+02 Score=36.97 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhcCccCCCCCCCEEEEeC-CCCchhHHHHHHhcCC--CeEEE
Q psy3752 304 FYRKQMKLNRVIGGIKNMNIIPDAIFIID-VGYHKGAVSEAIKLNI--PIIGV 353 (1012)
Q Consensus 304 ~~~~~~kl~~~~~g~~~~~~~P~~~iv~~-~~~~~~ai~Ea~~l~i--P~i~l 353 (1012)
+.|..+++.+.+ .+..||++|++| |.=|....+.+++.|| |||-.
T Consensus 295 l~~~~~~l~~~i-----~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyY 342 (608)
T PRK01021 295 LWYRYRKLYKTI-----LKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHY 342 (608)
T ss_pred HHHHHHHHHHHH-----HhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 344444444444 235899999998 6678889999999996 98544
No 387
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=28.05 E-value=4.8e+02 Score=27.52 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhcCCE-EEEEecChhhHHHHHHHHHHcCCCeecCcccC-ccccChHHHHHHHHHHHHHHhhhccCcccC
Q psy3752 218 EKAIRYIYQLGFSKGT-LLFVGTKRQARGVIANEAVRAGMPFIDQRWLG-GLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295 (1012)
Q Consensus 218 ~~a~~~i~~~~~~~~~-ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~-G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1012)
..|+.+...+.+.|=+ |=+.=+.+.+.+.|+.+++.... --+| ||..|..|....+.
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~-----~lIGAGTVL~~~q~~~a~~---------------- 83 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPE-----ALIGAGTVLNPEQARQAIA---------------- 83 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcc-----cEEccccccCHHHHHHHHH----------------
Confidence 4566667777666644 55556677888999999988873 2355 99999887644332
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCCCeE
Q psy3752 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPII 351 (1012)
Q Consensus 296 ~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i 351 (1012)
-..-|++.|+-+...++-|...+||++
T Consensus 84 -----------------------------aGa~fiVsP~~~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 84 -----------------------------AGAQFIVSPGLNPEVAKAANRYGIPYI 110 (211)
T ss_pred -----------------------------cCCCEEECCCCCHHHHHHHHhCCCccc
Confidence 234678999999999999999999984
No 388
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=28.00 E-value=3e+02 Score=26.94 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 981 YRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 981 ~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
...++..+.+.++.-++++.+.+..+++|
T Consensus 72 ~~a~~~~~~~~~~a~~e~~~~~~~a~~~i 100 (147)
T TIGR01144 72 KRGSEILEEAKAEAREEREKIKAQARAEI 100 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444
No 389
>PRK05636 replicative DNA helicase; Provisional
Probab=27.95 E-value=4.7e+02 Score=31.62 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=47.0
Q ss_pred CCCcceeecccCCceee-----cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHH-HHHHcCCCeecCcccC
Q psy3752 192 PKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN-EAVRAGMPFIDQRWLG 265 (1012)
Q Consensus 192 p~m~~yi~~~r~g~~ii-----~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~-~a~~~~~~~v~~rw~~ 265 (1012)
+.+...+-|.+.|-.|+ ..-||...|.-|.+... +++..++|++.--....++.+ +|..++..+ .++..
T Consensus 253 ~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~---~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~--~~i~~ 327 (505)
T PRK05636 253 KDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASI---KHNKASVIFSLEMSKSEIVMRLLSAEAEVRL--SDMRG 327 (505)
T ss_pred HHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEEeeCCHHHHHHHHHHHhcCCCH--HHHhc
Confidence 34555666777776655 67889887766654321 357788888776655555544 455566544 34667
Q ss_pred ccccCh
Q psy3752 266 GLLTNF 271 (1012)
Q Consensus 266 G~lTN~ 271 (1012)
|.||..
T Consensus 328 g~l~~~ 333 (505)
T PRK05636 328 GKMDED 333 (505)
T ss_pred CCCCHH
Confidence 888753
No 390
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=27.91 E-value=48 Score=28.07 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=21.1
Q ss_pred CceEEEEecCCCCCchhhhcCCCCCccEEEeCCE
Q psy3752 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDL 34 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~ 34 (1012)
++|+.+.++-.....+.++..+...||+++.+|.
T Consensus 24 i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 24 IAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 5777777664332222333457889999998653
No 391
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=27.81 E-value=1.4e+02 Score=31.42 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=27.5
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCC
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHS 359 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~ 359 (1012)
.||+||..+.........+-...+|||+.+-.++..
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~ 95 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPF 95 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCS
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeecccch
Confidence 699999988776778888889999999887555443
No 392
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=27.74 E-value=2.9e+02 Score=28.38 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 935 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 935 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
+.|++.++.--..+++.+......+.++...+.+.++.. .+-++-....++..+++.++.-.+++...+.-+++|
T Consensus 61 ~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I 136 (181)
T PRK13454 61 AERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRI 136 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555577777777777777777776655433 244444455555666666666666666665544444
No 393
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=27.66 E-value=7.1e+02 Score=28.08 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=19.2
Q ss_pred hhHHHHHHhcCCCeEEEecCCCCCCc
Q psy3752 337 KGAVSEAIKLNIPIIGVVDTNHSPDG 362 (1012)
Q Consensus 337 ~~ai~Ea~~l~iP~i~l~Dt~~~~~~ 362 (1012)
..++-||-..|+|+|+ .|....++.
T Consensus 286 ~~~~lEAma~G~Pvv~-s~~~g~~e~ 310 (374)
T TIGR03088 286 SNTILEAMASGLPVIA-TAVGGNPEL 310 (374)
T ss_pred chHHHHHHHcCCCEEE-cCCCCcHHH
Confidence 5689999999999998 455445543
No 394
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=27.50 E-value=2.5e+02 Score=25.83 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 936 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 1007 (1012)
Q Consensus 936 ~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kek 1007 (1012)
.|...+|.|+..++ .-|-..|...-+.++...+.. .-.......+|++-|+..+..+...+.....
T Consensus 26 ~r~~~lk~Ak~eA~---~ei~~~r~~~e~~~~~~~~~~---~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~ 91 (105)
T PF03179_consen 26 EREQRLKQAKEEAE---KEIEEFRAEAEEEFKEKEAEA---EGEAEQEAEELEKETEEKIEEIKKSASKNKD 91 (105)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh---hccchhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444443 344444444444444432211 1223344555555555555555555554433
No 395
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=27.45 E-value=4.1e+02 Score=23.01 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 932 LTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLIN 1004 (1012)
Q Consensus 932 ~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~ 1004 (1012)
+|++..+.|.+....+-.. -|-+..+.++.....|.+||+-....-++=|...+.-|.+++..+..
T Consensus 6 lT~~g~~~L~~EL~~L~~~-------~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 6 LTPEGYEKLQAELEHLKNV-------ERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp EEHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777777776666553221 33455566666667888999999999999999999999999998865
No 396
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=27.22 E-value=82 Score=25.89 Aligned_cols=38 Identities=21% Similarity=0.035 Sum_probs=31.7
Q ss_pred hhhhhhccccc-ChHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy3752 393 TVGELRSKTLA-PIMECKKALIEANGKLSKAEEILRIKL 430 (1012)
Q Consensus 393 ~v~~lr~~t~~-~~~~~k~al~~~~~d~~~a~~~l~~~~ 430 (1012)
.+..+++-+|. +=.|....|.+||.|-+.|.+-|-.+.
T Consensus 8 ~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~qD 46 (60)
T PF06972_consen 8 TVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQD 46 (60)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 45667777777 888999999999999999999887653
No 397
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.15 E-value=1.1e+02 Score=33.28 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=38.2
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
..+|.+|+.....+...++++...|||+|.+ |++.+ ..++|.-+-| ..+-......|.+
T Consensus 55 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~-~~~~~v~~d~---~~~g~~~~~~L~~ 113 (283)
T cd06279 55 ALVDGFIVYGVPRDDPLVAALLRRGLPVVVV-DQPLP-PGVPSVGIDD---RAAAREAARHLLD 113 (283)
T ss_pred cCCCEEEEeCCCCChHHHHHHHHcCCCEEEE-ecCCC-CCCCEEeeCc---HHHHHHHHHHHHH
Confidence 3689998876555557899999999999876 66544 3345544433 3344445454433
No 398
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=27.10 E-value=1.8e+02 Score=32.85 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHH
Q psy3752 936 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI 987 (1012)
Q Consensus 936 ~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~i 987 (1012)
.|++..+...+..++.|..-+.-|+.-.++-++-++-..+|+++.++.+++-
T Consensus 263 ~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~lspeeQrK~eeKe 314 (321)
T PF07946_consen 263 NREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKLSPEEQRKYEEKE 314 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444455555555555555444444443333333333457777777766443
No 399
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=27.02 E-value=81 Score=34.26 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCcEEEEecCCchhHHHHhc
Q psy3752 785 TAFSFCRDQKLPIRVFSIIKSGALKRVIE 813 (1012)
Q Consensus 785 ~aa~~a~~~gi~v~I~~g~~~~~i~~~l~ 813 (1012)
.|+..+.+.|+.++|++|+....+..++.
T Consensus 27 ~ai~~~~~~G~~~~iaTGR~~~~~~~~~~ 55 (272)
T PRK10530 27 EALARAREAGYKVIIVTGRHHVAIHPFYQ 55 (272)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 46777888999999999998877666543
No 400
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=27.01 E-value=4.9e+02 Score=27.35 Aligned_cols=75 Identities=11% Similarity=0.047 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 935 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 935 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
|.|++.+..--..+++.|...-..+.++.+.|++.++.. .|-++-....+++.+.+.++-..+++.+++.-+++|
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I 158 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARI 158 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444577777777777777777666654422 233344444555555566666666666666666655
No 401
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.84 E-value=3.4e+02 Score=26.61 Aligned_cols=10 Identities=10% Similarity=0.401 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy3752 953 ISIRKIRRDS 962 (1012)
Q Consensus 953 ~~iR~iR~~~ 962 (1012)
..+++.|.++
T Consensus 66 ~~l~~Ar~eA 75 (141)
T PRK08476 66 TILKNAREEA 75 (141)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 402
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.72 E-value=1.1e+02 Score=33.07 Aligned_cols=58 Identities=22% Similarity=0.177 Sum_probs=35.8
Q ss_pred CCCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCCCC--CcceeeccCCCCchhhHHHHhhhh
Q psy3752 323 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAKSIALYTKGI 384 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~~~--~~i~~~IP~N~~s~~si~l~~~~l 384 (1012)
..+|.+|+.....+ ...++++...|||+|.+ |++.+. ..++|..+-| ..+.......|
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~-~~~~~~~~~~~~~v~~d~---~~~g~~~~~~l 115 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV-DSSINLEAGVVTQVQSSN---AKNGNLVGEWV 115 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEe-cCCCCCCcCeEEEEecCc---HHHHHHHHHHH
Confidence 36999998755434 35689999999999987 544332 3455655533 33444444444
No 403
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=26.64 E-value=83 Score=32.98 Aligned_cols=28 Identities=7% Similarity=0.099 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCcEEEEecCCchhHHHHh
Q psy3752 785 TAFSFCRDQKLPIRVFSIIKSGALKRVI 812 (1012)
Q Consensus 785 ~aa~~a~~~gi~v~I~~g~~~~~i~~~l 812 (1012)
.++..+.+.|++++|++|+....+..++
T Consensus 25 ~~i~~l~~~g~~~~~~TGR~~~~~~~~~ 52 (215)
T TIGR01487 25 EAIRKAEKKGIPVSLVTGNTVPFARALA 52 (215)
T ss_pred HHHHHHHHCCCEEEEEcCCcchhHHHHH
Confidence 4677778889999999999887776654
No 404
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=26.27 E-value=4.6e+02 Score=30.77 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHH-HHHcCCCeecCcccCccccC
Q psy3752 209 NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE-AVRAGMPFIDQRWLGGLLTN 270 (1012)
Q Consensus 209 ~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~-a~~~~~~~v~~rw~~G~lTN 270 (1012)
..-||...+.-|+++.. .++..++|++.--...+++.++ +..+|..+ .++..|.+++
T Consensus 204 g~GKT~~al~ia~~~a~---~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~--~~~~~~~l~~ 261 (421)
T TIGR03600 204 SMGKTTLALNIAENVAL---REGKPVLFFSLEMSAEQLGERLLASKSGINT--GNIRTGRFND 261 (421)
T ss_pred CCCHHHHHHHHHHHHHH---hCCCcEEEEECCCCHHHHHHHHHHHHcCCCH--HHHhcCCCCH
Confidence 45688888877766532 4678899999877666666665 44555544 3466777765
No 405
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=26.20 E-value=3.1e+02 Score=29.43 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=34.8
Q ss_pred CCEEEEeCCCCchhHHHHHHhc----CCCeEEEecCC-CCCCcceeeccCCCCchhhHHHHhhh
Q psy3752 325 PDAIFIIDVGYHKGAVSEAIKL----NIPIIGVVDTN-HSPDGINYVIPGNDDSAKSIALYTKG 383 (1012)
Q Consensus 325 P~~~iv~~~~~~~~ai~Ea~~l----~iP~i~l~Dt~-~~~~~i~~~IP~N~~s~~si~l~~~~ 383 (1012)
||+|++.+-..-.-+++.+... +||++++-|+. ..|.+.++..|-..-+..++.++..+
T Consensus 185 ~dai~~~~d~~a~~~~~~~~~~~~~~~ipvig~d~~~~~~~~l~tv~~~~~~~G~~a~~~l~~~ 248 (281)
T cd06325 185 VDAIYVPTDNTVASAMEAVVKVANEAKIPVIASDDDMVKRGGLATYGIDYYELGRQTGKMAAKI 248 (281)
T ss_pred CCEEEEcCchhHHhHHHHHHHHHHHcCCCEEEcCHHHHhCCceEEecCCHHHHHHHHHHHHHHH
Confidence 7888876543322344444443 79999998875 45555565555444445555544443
No 406
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=26.17 E-value=3.6e+02 Score=29.58 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=37.9
Q ss_pred CCCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhh
Q psy3752 323 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDA 387 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~a 387 (1012)
..||.+|+..+..+ ..+++++...|||+|.+ |+..++....++.-+ .|...+.++....|.+.
T Consensus 55 ~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v-~~~~~~~~~~~~~v~-~D~~~~g~~a~~~l~~~ 119 (298)
T cd06302 55 QGVDAIAVVPNDPDALEPVLKKAREAGIKVVTH-DSDVQPDNRDYDIEQ-ADNKAIGETLMDSLAEQ 119 (298)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEE-cCCCCCCcceeEEec-cCHHHHHHHHHHHHHHH
Confidence 36999999865544 56789999999998876 554332112222212 24455656665555543
No 407
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=25.95 E-value=85 Score=35.91 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCCCEEEEeC-CCCchhHHHHHHhc--CCCeEEEe
Q psy3752 323 IIPDAIFIID-VGYHKGAVSEAIKL--NIPIIGVV 354 (1012)
Q Consensus 323 ~~P~~~iv~~-~~~~~~ai~Ea~~l--~iP~i~l~ 354 (1012)
..||++|++| |.-|....+.+++. |||||-.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi 109 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYI 109 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5899999998 66788899999999 79996554
No 408
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.91 E-value=4.9e+02 Score=27.50 Aligned_cols=84 Identities=24% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEe-cChhhHHHHHHHHHHcCCCeecCcccC-ccccChHHHHHHHHHHHHHHhhhccCcccC
Q psy3752 218 EKAIRYIYQLGFSKGTLLFVG-TKRQARGVIANEAVRAGMPFIDQRWLG-GLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295 (1012)
Q Consensus 218 ~~a~~~i~~~~~~~~~ilfv~-t~~~~~~~v~~~a~~~~~~~v~~rw~~-G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1012)
..|......+.+.|=+++=|+ +.+.+.+.|+++.++.. +-++| ||.|+..+.+..+.
T Consensus 27 ~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p-----~~~IGAGTVl~~~~a~~a~~---------------- 85 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVP-----EALIGAGTVLNPEQLAQAIE---------------- 85 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCC-----CCEEEEeeccCHHHHHHHHH----------------
Confidence 345555555655554444333 55667778888776543 24455 88888766544332
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCCCeE
Q psy3752 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPII 351 (1012)
Q Consensus 296 ~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i 351 (1012)
-..=|++.|.-+...++.|++.+||.+
T Consensus 86 -----------------------------aGA~FivsP~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 86 -----------------------------AGAQFIVSPGLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred -----------------------------cCCCEEECCCCCHHHHHHHHHcCCCEe
Confidence 122466778888889999999999887
No 409
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=25.72 E-value=3.1e+02 Score=27.45 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 930 PPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLIN 1004 (1012)
Q Consensus 930 P~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~ 1004 (1012)
+.||+|-.++|.+....+-. .-|.+..+.++.....+.+||+.....-++-|...+.-+.+++..++.
T Consensus 3 ~~lT~~G~~~L~~El~~L~~-------~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 3 PLITPEGYEKLKQELNYLWR-------EERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred cccCHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999888877766421 234445555555556778999999999999999999999999988764
No 410
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.70 E-value=1e+02 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=32.9
Q ss_pred CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHH
Q psy3752 1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYI 46 (1012)
Q Consensus 1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL 46 (1012)
++|+.+.++-.. ...++.+.+...++|++..+|..|.....++.+.
T Consensus 38 i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 38 VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 567777765332 1244556677889999999999998888877754
No 411
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.40 E-value=2.4e+02 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 929 IPPLTKERREEIVKLIKNITEETKISIRKIRRDS 962 (1012)
Q Consensus 929 iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~ 962 (1012)
+|+.+.+.|+..++.+....++|..-|...--++
T Consensus 15 ~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~ 48 (79)
T PF05008_consen 15 IKNLSGEQRKSLIREIERDLDEAEELLKQMELEV 48 (79)
T ss_dssp GGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556668999999999999999999887665444
No 412
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=25.39 E-value=5.3e+02 Score=23.59 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy3752 930 PPLTKERREEIVKLIKNITEETKI---SIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 1003 (1012)
Q Consensus 930 P~~t~E~R~~l~k~~k~~~e~~k~---~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~ 1003 (1012)
..+|+|.++++-+...+...+.+. .+|..|.+. ..+.......++.+..+.+++.++..+......+.+-
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l----~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~ 112 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQEL----RALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLL 112 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999888777766654443 444444444 4433344567777777777777777766666555443
No 413
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.30 E-value=1e+02 Score=33.15 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=35.8
Q ss_pred CCCEEEEeCCCC--chhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 324 IPDAIFIIDVGY--HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 324 ~P~~~iv~~~~~--~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
.+|.+|+..+.. ....++++...|||+|.+ |++.++..+.+..+-| ...-......|.+
T Consensus 55 ~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~-~~~~~~~~~~~V~~d~---~~~g~~~~~~l~~ 115 (273)
T cd06305 55 KVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF-DVDSDNPKVNNTTQDD---YSLARLSLDQLVK 115 (273)
T ss_pred CCCEEEEecCChhhhHHHHHHHHHcCCCEEEe-cCCCCCCccceeeech---HHHHHHHHHHHHH
Confidence 689999875533 356789999999999866 5544433445544433 3333444444433
No 414
>PRK06771 hypothetical protein; Provisional
Probab=25.23 E-value=42 Score=30.24 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=24.4
Q ss_pred hhhhhhhhhhhhhhhcccccChHHHHHHHH
Q psy3752 384 IVDAFLDAKTVGELRSKTLAPIMECKKALI 413 (1012)
Q Consensus 384 l~~ai~~g~~v~~lr~~t~~~~~~~k~al~ 413 (1012)
|.+.....+++|..|+.||+++-++|++..
T Consensus 62 Li~~Gkki~AIK~~Re~tG~~L~eAK~yVD 91 (93)
T PRK06771 62 LMEEGQTVTAVKRVREAFGFSLLEAKQYVD 91 (93)
T ss_pred HHHcCCchHHHHHHHHHcCCCHHHHHHHHh
Confidence 445566667899999999999999998753
No 415
>PLN02335 anthranilate synthase
Probab=25.15 E-value=1.8e+02 Score=31.01 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=26.9
Q ss_pred HhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcc
Q psy3752 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW 263 (1012)
Q Consensus 227 ~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw 263 (1012)
-+.++++||+|.....+..-+.......|.....-+|
T Consensus 14 ~~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 14 SSKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRN 50 (222)
T ss_pred ccCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEEC
Confidence 3467889999988777766677777777876655454
No 416
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=25.04 E-value=3.1e+02 Score=27.31 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 940 IVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 940 l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
.-+.+.+.-++++..+...|.++.+-+....... ...++-...++++.+.+.++..++++.--+...++|
T Consensus 68 ~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l 138 (156)
T CHL00118 68 ILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSL 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333322211 134566677888888888888887777555544443
No 417
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.03 E-value=1.6e+02 Score=31.31 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=21.7
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEE
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l 353 (1012)
.||+|+..+.......+..-.++||||+.+
T Consensus 58 ~PDlIi~~~~~~~~~~~~~l~~~gipvv~~ 87 (235)
T cd01149 58 KPTLVIASDEAGPPEALDQLRAAGVPVVTV 87 (235)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHcCCeEEEe
Confidence 799998765444444566667899999765
No 418
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=24.99 E-value=1.5e+02 Score=29.93 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCCCEEEEeCCCCchh---HHHHHHhc-CCCeEEEe-cCC
Q psy3752 323 IIPDAIFIIDVGYHKG---AVSEAIKL-NIPIIGVV-DTN 357 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~---ai~Ea~~l-~iP~i~l~-Dt~ 357 (1012)
..||+||.+-|-.... .+++...+ ++|+++++ |-+
T Consensus 88 ~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~ 127 (169)
T PF06925_consen 88 FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFD 127 (169)
T ss_pred cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCC
Confidence 3899999999975555 35666667 79988775 554
No 419
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.94 E-value=5.5e+02 Score=27.14 Aligned_cols=93 Identities=17% Similarity=0.109 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhcCCEEE-EEecChhhHHHHHHHHHHcCCCeecCcccC-ccccChHHHHHHHHHHHHHHhhhccCcccC
Q psy3752 218 EKAIRYIYQLGFSKGTLL-FVGTKRQARGVIANEAVRAGMPFIDQRWLG-GLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295 (1012)
Q Consensus 218 ~~a~~~i~~~~~~~~~il-fv~t~~~~~~~v~~~a~~~~~~~v~~rw~~-G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1012)
..|......+.+.|=+++ +.=+.+.+-+.|+++.++.+..+ +-.+| ||.+|..+.+..+.
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p--~~~vGaGTV~~~~~~~~a~~---------------- 86 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDP--EVLIGAGTVLDAVTARLAIL---------------- 86 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCC--CeEEeeeeCCCHHHHHHHHH----------------
Confidence 345555555655554433 33445567777888877653211 12356 89999877654432
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCC
Q psy3752 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTN 357 (1012)
Q Consensus 296 ~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~ 357 (1012)
-..=|++.|.-+...++.|+..|||.+-=|-|-
T Consensus 87 -----------------------------aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~T~ 119 (213)
T PRK06552 87 -----------------------------AGAQFIVSPSFNRETAKICNLYQIPYLPGCMTV 119 (213)
T ss_pred -----------------------------cCCCEEECCCCCHHHHHHHHHcCCCEECCcCCH
Confidence 123467899999999999999999987655543
No 420
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.88 E-value=98 Score=33.31 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=37.1
Q ss_pred CCCCEEEEeCCCCc-----hhHHHHHHhcCCCeEEEecCCCCC-CcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 323 IIPDAIFIIDVGYH-----KGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~-----~~ai~Ea~~l~iP~i~l~Dt~~~~-~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
+.+|.+|++.+..+ ..++.++.+.|||+|.+ |++.+. ..+++... |...+.......|.+
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i-~~~~~~~~~~~~V~~---d~~~~~~~~~~~l~~ 119 (273)
T cd06292 54 RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV-NGRAPPPLKVPHVST---DDALAMRLAVRHLVA 119 (273)
T ss_pred cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE-cCCCCCCCCCCEEEE---CcHHHHHHHHHHHHH
Confidence 36899999754322 24589999999999887 655432 23444444 344455555555544
No 421
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=24.87 E-value=89 Score=33.99 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCcEEEEecCCchhHHHHhc
Q psy3752 785 TAFSFCRDQKLPIRVFSIIKSGALKRVIE 813 (1012)
Q Consensus 785 ~aa~~a~~~gi~v~I~~g~~~~~i~~~l~ 813 (1012)
.|++.+.+.|+.++|++|+....+..++.
T Consensus 27 ~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 55 (270)
T PRK10513 27 QAIAAARAKGVNVVLTTGRPYAGVHRYLK 55 (270)
T ss_pred HHHHHHHHCCCEEEEecCCChHHHHHHHH
Confidence 46777888999999999998877766543
No 422
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=24.70 E-value=1.8e+02 Score=31.16 Aligned_cols=59 Identities=22% Similarity=0.144 Sum_probs=35.7
Q ss_pred CCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCC-CCCcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 324 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNH-SPDGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 324 ~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~-~~~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
.+|.+|+..+..+ ...+.++...|||+|.+ |+.. +.....|.-+ |...+-++....|.+
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~ 117 (270)
T cd06308 56 GVDLLIISPNEAAPLTPVVEEAYRAGIPVILL-DRKILSDKYTAYIGA---DNYEIGRQAGEYIAN 117 (270)
T ss_pred CCCEEEEecCchhhchHHHHHHHHCCCCEEEe-CCCCCCccceEEeec---CcHHHHHHHHHHHHH
Confidence 6899988754433 45688999999999966 4433 3222333333 344455555555544
No 423
>KOG1664|consensus
Probab=24.63 E-value=2.7e+02 Score=29.00 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3752 951 TKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 1010 (1012)
Q Consensus 951 ~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel~ 1010 (1012)
-+--++-||++|.++.+... ++-++.+.+|| -.|...-..+|++-++.|||++.
T Consensus 10 i~~M~aFI~qEA~EKA~EI~----~kAeeEfnIEK--~rlV~~q~~kI~~~yekKeKqve 63 (220)
T KOG1664|consen 10 IKHMVAFIRQEAEEKAKEID----AKAEEEFNIEK--GRLVQEQRLKIMQYYEKKEKQVE 63 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hhhHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467889999999887652 56677776665 35667777888888888888864
No 424
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=24.57 E-value=3.2e+02 Score=29.72 Aligned_cols=28 Identities=11% Similarity=-0.074 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3752 981 YRAQYDIQKLTDKFILEINQLLINKEKE 1008 (1012)
Q Consensus 981 ~~~~~~iq~~~~~~~~~id~~~~~keke 1008 (1012)
...+++.+++.++--.+++.+.....++
T Consensus 82 ~eA~~~~~~il~~A~~ea~~~~~~a~~~ 109 (250)
T PRK14474 82 EAADEQRQHLLNEAREDVATARDEWLEQ 109 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544443
No 425
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=24.55 E-value=1.6e+02 Score=34.08 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=25.5
Q ss_pred CCCCCEEEEeC-CCCchhHHHHHHhcCCCe
Q psy3752 322 NIIPDAIFIID-VGYHKGAVSEAIKLNIPI 350 (1012)
Q Consensus 322 ~~~P~~~iv~~-~~~~~~ai~Ea~~l~iP~ 350 (1012)
...||++|++| |.-|....+.+++.|+|+
T Consensus 80 ~~~pd~vIlID~pgFNlrlak~lk~~~~~~ 109 (373)
T PF02684_consen 80 EEKPDVVILIDYPGFNLRLAKKLKKRGIPI 109 (373)
T ss_pred HcCCCEEEEeCCCCccHHHHHHHHHhCCCc
Confidence 45899999998 668999999999999983
No 426
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=24.53 E-value=1.7e+02 Score=31.12 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=29.0
Q ss_pred CCEEEEe--CCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccC
Q psy3752 325 PDAIFII--DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPG 369 (1012)
Q Consensus 325 P~~~iv~--~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~ 369 (1012)
.++||.. |+.-|.....+|...++|+....| |..-||..|+
T Consensus 86 ~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~----p~~~dFi~PA 128 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD----YKKGLCIIPY 128 (223)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC----cccCeEEeee
Confidence 5667765 566788889999999999875433 3445666665
No 427
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.39 E-value=1.3e+02 Score=32.08 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=36.7
Q ss_pred CCCCEEEEeCCCCc-hhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhh
Q psy3752 323 IIPDAIFIIDVGYH-KGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 384 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~-~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l 384 (1012)
..+|.+|+.....+ ..+++++...|||+|.+ |+..+...++|.-+-|. .+..+.+..|
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~d~~---~~~~~~~~~l 112 (268)
T cd06289 54 HGVAGIILCPAAGTSPDLLKRLAESGIPVVLV-AREVAGAPFDYVGPDNA---AGARLATEHL 112 (268)
T ss_pred cCCCEEEEeCCCCccHHHHHHHHhcCCCEEEE-eccCCCCCCCEEeecch---HHHHHHHHHH
Confidence 36899998865443 34789999999999987 44433334566555443 3444444444
No 428
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=24.28 E-value=7.5e+02 Score=24.97 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCEEEEEecC---hhhHHHHHHHHHHcCCCeecCcc
Q psy3752 231 KGTLLFVGTK---RQARGVIANEAVRAGMPFIDQRW 263 (1012)
Q Consensus 231 ~~~ilfv~t~---~~~~~~v~~~a~~~~~~~v~~rw 263 (1012)
+.-++++|.. ..+.+.+.+++++.|.+.+..-.
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 4557777864 36788999999999998887444
No 429
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=24.08 E-value=4.7e+02 Score=27.84 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=30.0
Q ss_pred CCCEEEEeCCCC--chhHHHHHHhcCCCeEEEecCCCCC--Ccceeecc
Q psy3752 324 IPDAIFIIDVGY--HKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIP 368 (1012)
Q Consensus 324 ~P~~~iv~~~~~--~~~ai~Ea~~l~iP~i~l~Dt~~~~--~~i~~~IP 368 (1012)
.+|.+|+..... ....+.++...+||+|.+ |++.+. ..+.|..+
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~~~V~~ 103 (272)
T cd06301 56 GVDAIIVVPVDTAATAPIVKAANAAGIPLVYV-NRRPENAPKGVAYVGS 103 (272)
T ss_pred CCCEEEEecCchhhhHHHHHHHHHCCCeEEEe-cCCCCCCCCeeEEEec
Confidence 688888865443 356789999999999965 554433 34555444
No 430
>KOG0225|consensus
Probab=24.03 E-value=1.3e+02 Score=33.68 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCChhhhHhHHHHHHHHHHHHHHHHHH
Q psy3752 930 PPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKL-LKNKILSVDNEYRAQYDIQKLTDKFILEINQ 1000 (1012)
Q Consensus 930 P~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~-~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~ 1000 (1012)
|-.|=++|+|+-+ +|. -||-+..+|+. ...+..+|+|+|.++++|.+..|+-++..++
T Consensus 297 Pg~sYRtReEiq~------------vR~-kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~ 355 (394)
T KOG0225|consen 297 PGTSYRTREEIQE------------VRQ-KRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATA 355 (394)
T ss_pred CCcccchHHHHHH------------HHh-ccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445577877643 333 24555555553 2345679999999999999998888776653
No 431
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=23.78 E-value=2.4e+02 Score=29.09 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=19.1
Q ss_pred CCCEEEEeCCC-C------chhHHHHHHhcCCCeEEEe
Q psy3752 324 IPDAIFIIDVG-Y------HKGAVSEAIKLNIPIIGVV 354 (1012)
Q Consensus 324 ~P~~~iv~~~~-~------~~~ai~Ea~~l~iP~i~l~ 354 (1012)
.||.||+..-. . ....+++ ...++|++|||
T Consensus 43 ~~~~iilsgGP~~~~~~~~~~~~i~~-~~~~~PiLGIC 79 (191)
T PRK06774 43 APSHLVISPGPCTPNEAGISLAVIRH-FADKLPILGVC 79 (191)
T ss_pred CCCeEEEcCCCCChHhCCCchHHHHH-hcCCCCEEEEC
Confidence 58888887422 1 2234443 45689999997
No 432
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=23.74 E-value=3.1e+02 Score=31.99 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=26.6
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEE
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIG 352 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~ 352 (1012)
.||++|++...-=.+-|.||.+.|||++=
T Consensus 123 ~P~l~Ii~EtElWPnli~e~~~~~~p~~L 151 (419)
T COG1519 123 RPKLLIIMETELWPNLINELKRRGIPLVL 151 (419)
T ss_pred CCCEEEEEeccccHHHHHHHHHcCCCEEE
Confidence 79999999988888999999999999853
No 433
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.65 E-value=1.7e+02 Score=31.44 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=25.3
Q ss_pred CCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCC
Q psy3752 324 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNH 358 (1012)
Q Consensus 324 ~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~ 358 (1012)
.+|.+|+.....+ ...+.++...+||+|.+ |++.
T Consensus 56 ~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~-~~~~ 91 (275)
T cd06317 56 KVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT-NSNI 91 (275)
T ss_pred CCCEEEEecCCccccHHHHHHHHHCCCcEEEe-CCCC
Confidence 6899988765443 46789999999999955 5544
No 434
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=23.62 E-value=90 Score=31.86 Aligned_cols=67 Identities=24% Similarity=0.197 Sum_probs=46.8
Q ss_pred ccChHHHHHHHHHhc---CCHHHHHHHHHHhhhhhh--hhhccccccCceEEEEEe--CCEEEEEEEecCchhh
Q psy3752 402 LAPIMECKKALIEAN---GKLSKAEEILRIKLGKKI--LNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFV 468 (1012)
Q Consensus 402 ~~~~~~~k~al~~~~---~d~~~a~~~l~~~~~~~a--~k~~~r~~~eG~v~~~~~--~~~~~lve~~~etdfv 468 (1012)
|..+..|.|+..|.+ .|.++|.++|+.=|...+ -||-.++=.-|-+.+.++ .+.|-.+|+.+.+++-
T Consensus 68 gp~ld~~~k~r~E~E~~v~D~~~~~~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~F~EIE~~~~d~ 141 (178)
T COG1437 68 GPKLDRESKTREEIEIEVSDVEKALEILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGDFLEIEVMVDDE 141 (178)
T ss_pred cccccccccceeeEEEEeCCHHHHHHHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcccEEEEEecCCc
Confidence 355666777777654 599999999999997544 234333333344566666 5689999999999864
No 435
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=23.48 E-value=6.4e+02 Score=30.77 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEecCh----hhHHHHHHHHHHcCCC---eecCcccCccccChHHHHHHHHHHHHHHhh
Q psy3752 215 YMYEKAIRYIYQLGFSKGTLLFVGTKR----QARGVIANEAVRAGMP---FIDQRWLGGLLTNFKTIKTSIQRLKEMDLF 287 (1012)
Q Consensus 215 ~~l~~a~~~i~~~~~~~~~ilfv~t~~----~~~~~v~~~a~~~~~~---~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~ 287 (1012)
.-+.+|+..|....+++.+|+++|-.. .+.-+...+..+.|.. |+..|...|.=-+...+ +
T Consensus 38 ~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i----~-------- 105 (539)
T TIGR00644 38 KDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEAL----R-------- 105 (539)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHH----H--------
Confidence 446677777777778889999988664 2344455566666642 33334333211111111 0
Q ss_pred hccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCC-CchhHHHHHHhcCCCeEEEec
Q psy3752 288 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG-YHKGAVSEAIKLNIPIIGVVD 355 (1012)
Q Consensus 288 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~-~~~~ai~Ea~~l~iP~i~l~D 355 (1012)
++. ...+|++|++|.. .++..+..|...++.+|- +|
T Consensus 106 ----------------------~~~---------~~~~~LiI~vD~G~~~~~~~~~~~~~g~~vIv-iD 142 (539)
T TIGR00644 106 ----------------------EAI---------ENGVSLIITVDNGISAHEEIDYAKELGIDVIV-TD 142 (539)
T ss_pred ----------------------HHH---------hcCCCEEEEeCCCcccHHHHHHHHhcCCCEEE-EC
Confidence 000 0257999999877 556778888888998865 46
No 436
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=23.45 E-value=67 Score=24.12 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q psy3752 406 MECKKALIEANGKLSKAEEIL 426 (1012)
Q Consensus 406 ~~~k~al~~~~~d~~~a~~~l 426 (1012)
..-.-.|+-|+||+-+|+|.+
T Consensus 18 ~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 18 SVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHHHHcCCcHHHHHHHh
Confidence 445668999999999999864
No 437
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=23.37 E-value=3.9e+02 Score=26.63 Aligned_cols=22 Identities=5% Similarity=0.179 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3752 946 NITEETKISIRKIRRDSNENLK 967 (1012)
Q Consensus 946 ~~~e~~k~~iR~iR~~~~~~~k 967 (1012)
+..++++..+.+.|.++.+-+.
T Consensus 54 ~~~~~~e~~L~~A~~ea~~ii~ 75 (159)
T PRK09173 54 QLLAEYQRKRKEAEKEAADIVA 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333
No 438
>PRK05670 anthranilate synthase component II; Provisional
Probab=23.29 E-value=1.8e+02 Score=29.91 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=21.9
Q ss_pred EEEEecChhhHHHHHHHHHHcCCCeecCcc
Q psy3752 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRW 263 (1012)
Q Consensus 234 ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw 263 (1012)
||++.....+...+.++..+.|..+..-+|
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEEC
Confidence 788888887777777777777776654444
No 439
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.24 E-value=1.6e+02 Score=31.70 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCChhhhHhHHHHHHHHHHHHHHHHHHH
Q psy3752 930 PPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKL-LKNKILSVDNEYRAQYDIQKLTDKFILEINQL 1001 (1012)
Q Consensus 930 P~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~-~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~ 1001 (1012)
|.+|.|-|.-|.-..|.....-|.++|.+..--.+.-.+- .+...+-++-.++++++|..+-++.+.-||..
T Consensus 32 ~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~ 104 (236)
T PF00244_consen 32 PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKIEDELIDICNEIIRLIDKS 104 (236)
T ss_dssp S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998876443322110 00111234445556666666666666666653
No 440
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=22.95 E-value=3.6e+02 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCCEEEEe----CCC---CchhHHHHHHhcCCCeEEEe
Q psy3752 324 IPDAIFII----DVG---YHKGAVSEAIKLNIPIIGVV 354 (1012)
Q Consensus 324 ~P~~~iv~----~~~---~~~~ai~Ea~~l~iP~i~l~ 354 (1012)
.+|.||+. +|. .+...+++|...++|++|||
T Consensus 46 ~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC 83 (214)
T PRK07765 46 QFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVC 83 (214)
T ss_pred CCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEc
Confidence 46777776 332 34468889988899999997
No 441
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=22.69 E-value=2.1e+02 Score=30.75 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCC-CCCcceeeccCCCCchhhHHHHhhhhhhh
Q psy3752 324 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNH-SPDGINYVIPGNDDSAKSIALYTKGIVDA 387 (1012)
Q Consensus 324 ~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~-~~~~i~~~IP~N~~s~~si~l~~~~l~~a 387 (1012)
.+|.+|+.....+ ..+++++.+.|||+|.+ |.+. +...+.|.-. |...+.++..+.|.+.
T Consensus 58 ~vdgiii~~~~~~~~~~~i~~~~~~~ipvV~~-~~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~~ 120 (275)
T cd06307 58 RSDGVALVAPDHPQVRAAVARLAAAGVPVVTL-VSDLPGSPRAGYVGI---DNRAAGRTAAWLIGRF 120 (275)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEE-eCCCCCCceeeEEcc---ChHHHHHHHHHHHHHH
Confidence 5888888765533 35689999999999977 4332 2334556433 3334545555555544
No 442
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=22.63 E-value=4.3e+02 Score=30.06 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=64.2
Q ss_pred CcccHHHHHHHHHhcCCCCCccc---CCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3752 898 EKEMSSIIKKAINEANLGLNPTI---QGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKI 974 (1012)
Q Consensus 898 d~~~~~~i~~ai~~s~l~~~p~~---~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~ 974 (1012)
...-.-.+.|-+..+|..+.|.. .... .-.|++|.|+.+.+.+++..+..+..+...-++..+++|+. .-.
T Consensus 217 ~~~k~~EVqky~t~tnH~~~~~~~~~s~~~----w~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~~~~e~lk~~--Gv~ 290 (332)
T COG1638 217 YSAKLYEVQKYLTLTNHIYLPLAVLVSKAF----WDSLPEEDQTILLEAAKEAAEEQRKLVEELEDELLEKLKEA--GVE 290 (332)
T ss_pred hhccHHHHhHHhhhccccccceeeEEcHHH----HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCE
Confidence 34445577788888888877762 2222 23689999999999999999998887777777776666653 113
Q ss_pred CChhhhHh-HHHHHHHHHHHHHHH
Q psy3752 975 LSVDNEYR-AQYDIQKLTDKFILE 997 (1012)
Q Consensus 975 ~s~D~~~~-~~~~iq~~~~~~~~~ 997 (1012)
+.+.+... .++-.+.+.+.|.+.
T Consensus 291 v~~~~~~~~~~~~~~~~~~~~~~~ 314 (332)
T COG1638 291 VVEPDAAEAFREAAKPVYDEFAKK 314 (332)
T ss_pred EecCCchHHHHHHHHHHHHHHHhh
Confidence 33333333 666777777777776
No 443
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=22.60 E-value=61 Score=36.53 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=48.4
Q ss_pred CCCCEEEEeCC--------------------------CCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhh
Q psy3752 323 IIPDAIFIIDV--------------------------GYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKS 376 (1012)
Q Consensus 323 ~~P~~~iv~~~--------------------------~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~s 376 (1012)
-.||+||.+|. .+.+.++.| ..|||||||| -=|+-||.+.-+|| +
T Consensus 173 ~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~-etLGVPVIAI----GVPTVVdA~tI~~D----t 243 (358)
T TIGR01441 173 IKPDFVIAIDALAARKMERVNSTIQISDTGIHPGSGVGNKRKELSK-KTLGVPVIAV----GVPTVVDAVTIASD----T 243 (358)
T ss_pred hCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCH-HHcCCCEEEE----cCCeeechHHHHHH----H
Confidence 38999999992 255777777 6789999988 23556776666663 4
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhc
Q psy3752 377 IALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEAN 416 (1012)
Q Consensus 377 i~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~ 416 (1012)
+.+++.-|.+...++..- -|.-+.+++.--|+-|.+-+
T Consensus 244 id~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 281 (358)
T TIGR01441 244 IDYVLKHFGREVSEDKPS--RALAPAGMTFGERRELTDED 281 (358)
T ss_pred HHHHHHHHHhhhhccCcc--cccccccccccccccccccc
Confidence 555555554444332211 12233344444444455444
No 444
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=22.52 E-value=3.6e+02 Score=29.13 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 983 AQYDIQKLTDKFILEINQLLINKEK 1007 (1012)
Q Consensus 983 ~~~~iq~~~~~~~~~id~~~~~kek 1007 (1012)
.++.-+++.++--.+++.+.+....
T Consensus 84 A~~~~~~i~~~A~~ea~~~~~~a~~ 108 (246)
T TIGR03321 84 AQAERQRLLDEAREEADEIREKWQE 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 445
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.48 E-value=1.7e+02 Score=31.43 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=35.5
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhh
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 384 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l 384 (1012)
..+|.+|+..... ...+.++...+||+|. +|.+.+...+.|.-. |...+..+....|
T Consensus 57 ~~vdgiii~~~~~-~~~~~~l~~~~ipvV~-~~~~~~~~~~~~V~~---d~~~~~~~a~~~l 113 (268)
T cd06277 57 GKVDGIILLGGIS-TEYIKEIKELGIPFVL-VDHYIPNEKADCVLT---DNYSGAYAATEYL 113 (268)
T ss_pred CCCCEEEEeCCCC-hHHHHHHhhcCCCEEE-EccCCCCCCCCEEEe---cchHHHHHHHHHH
Confidence 3689999876543 3458889999999995 576655444555433 2233444444433
No 446
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.47 E-value=3.3e+02 Score=28.98 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=38.6
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
..+|.+++..+..+...++++...|||+|.+ |.+.+ ...|. ..|...+.+.....|.+
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~iPvv~~-~~~~~--~~~~V---~~d~~~ag~~a~~~L~~ 111 (265)
T cd06285 54 RRVDGLILGDARSDDHFLDELTRRGVPFVLV-LRHAG--TSPAV---TGDDVLGGRLATRHLLD 111 (265)
T ss_pred cCCCEEEEecCCCChHHHHHHHHcCCCEEEE-ccCCC--CCCEE---EeCcHHHHHHHHHHHHH
Confidence 3689999887776767889999999999776 54432 23333 23445666666665543
No 447
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=22.18 E-value=2.5e+02 Score=30.62 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=49.5
Q ss_pred HHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHH----h---------hh---cCcccHHHHHHHHh-CCCcE
Q psy3752 735 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI----S---------KK---LEIMDSTAFSFCRD-QKLPI 797 (1012)
Q Consensus 735 A~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~----~---------~G---~~v~~~~aa~~a~~-~gi~v 797 (1012)
=..|+|+ +-++.||.-=... .+..-+.++.. + +| |..+++.-+..+++ .+.|+
T Consensus 134 R~~l~a~-v~ilaDV~~kh~~---------~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PV 203 (254)
T PF03437_consen 134 RKRLGAD-VKILADVHVKHSS---------PLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPV 203 (254)
T ss_pred HHHcCCC-eEEEeeechhhcc---------cCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCE
Confidence 3578999 8889998743322 12222222221 1 22 23445544444433 35899
Q ss_pred EEEecCCchhHHHHhc---CCCcceEEEEe
Q psy3752 798 RVFSIIKSGALKRVIE---GKNEGTLVYEI 824 (1012)
Q Consensus 798 ~I~~g~~~~~i~~~l~---Ge~~GT~I~~~ 824 (1012)
++-+|-.++|+.+.|. |--+||.|...
T Consensus 204 lvGSGvt~~Ni~~~l~~ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 204 LVGSGVTPENIAEYLSYADGAIVGSYFKKD 233 (254)
T ss_pred EEecCCCHHHHHHHHHhCCEEEEeeeeeeC
Confidence 9999999999999875 55579999854
No 448
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=22.15 E-value=3.5e+02 Score=34.73 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy3752 932 LTKERREEIVKLIKNITEETKI-----SIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 1003 (1012)
Q Consensus 932 ~t~E~R~~l~k~~k~~~e~~k~-----~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~ 1003 (1012)
.|.|.+.+++.....++-..-. +.|++| .+.+.|+...+++ .|++|++++-+++.+.+++|++++-+-..
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr-~AQ~aL~eAL~~g-AsdeEI~~Lm~eLR~Am~~ym~~LAeq~~ 548 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDLSDAERRLR-AAQDALKDALERG-ASDEEIKQLTDKLRAAMQTYMRQLAQQLR 548 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7889999999998887753322 334444 3455555554444 79999999999999999999998876544
No 449
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=21.98 E-value=1.1e+02 Score=34.39 Aligned_cols=129 Identities=15% Similarity=0.167 Sum_probs=69.8
Q ss_pred eeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHH
Q psy3752 206 HIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMD 285 (1012)
Q Consensus 206 ~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~ 285 (1012)
+.+|.++-+..|..-..-+..++...+ +....+...+=.++.+.... +-+.||-|..++.+=
T Consensus 7 ~~l~fe~~i~el~~~i~~l~~~~~~~~----~~~~~~i~~l~~~~~~~~~~-------~~~~l~~w~~v~~aR------- 68 (322)
T CHL00198 7 HVPDFMKPLAELESQVEELSKLAPKND----KVINNKLKSFQRKLRILKKE-------IFYSLTPLQRLHLVR------- 68 (322)
T ss_pred cccchhhhHHHHHHHHHHHHhhhcccc----cCHHHHHHHHHHHHHHHHHH-------HHhcCCHHHHHHhhc-------
Confidence 567888888888887777777755443 34444444443344333333 335677786553321
Q ss_pred hhhccCcccCCCHHHHH-HHHHHHHHHHh---------hhcCccCCCCCCCEEEEeCCCC--------------------
Q psy3752 286 LFITNGSIRKLSKKEAL-LFYRKQMKLNR---------VIGGIKNMNIIPDAIFIIDVGY-------------------- 335 (1012)
Q Consensus 286 ~~~~~~~~~~~~kk~~~-~~~~~~~kl~~---------~~~g~~~~~~~P~~~iv~~~~~-------------------- 335 (1012)
.-++.+-.+.+ .+....-.|.. ...|+-.+...|-.||-.|+..
T Consensus 69 ------~~~Rp~~~d~i~~l~d~f~El~gd~~~~dd~avV~Glgri~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rK 142 (322)
T CHL00198 69 ------QSERPTTLDYIPYILDEWIELHGDRGGSDDPALVGGIGKINGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRK 142 (322)
T ss_pred ------CCCCCCHHHHHHHHhHHHHHHccccccCCCCceEEEEEEECCEEEEEEEecCCccchhhhhhcCCCCCHHHHHH
Confidence 00001111100 00001111222 2345555566777777777631
Q ss_pred chhHHHHHHhcCCCeEEEecCCC
Q psy3752 336 HKGAVSEAIKLNIPIIGVVDTNH 358 (1012)
Q Consensus 336 ~~~ai~Ea~~l~iP~i~l~Dt~~ 358 (1012)
-..+++-|.+.|+|+|.|+||-.
T Consensus 143 a~Rlm~lA~~f~lPIItlvDTpG 165 (322)
T CHL00198 143 ALRLMKHANKFGLPILTFIDTPG 165 (322)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCC
Confidence 12367888999999999999964
No 450
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=21.90 E-value=4.3e+02 Score=26.81 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752 944 IKNITEETKISIRKIRRDSNENLK 967 (1012)
Q Consensus 944 ~k~~~e~~k~~iR~iR~~~~~~~k 967 (1012)
.++..++++.....++.++..+..
T Consensus 75 ~e~~L~~a~~ea~~ii~~A~~~a~ 98 (175)
T PRK14472 75 NRELLAKADAEADKIIREGKEYAE 98 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544443
No 451
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=21.86 E-value=53 Score=32.77 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=47.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEe-cCccccccceeeEeecCCceEEEeecCcccHHHHHHHHHh
Q psy3752 833 KKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKY-HEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINE 911 (1012)
Q Consensus 833 ~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~-~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai~~ 911 (1012)
..+-+-+++...+-|...|.+= ..++..||-=+.+. .|.. .++. |.++ +=-|....|.|.|+|.+
T Consensus 49 ~a~~e~kl~~v~diL~~kl~KR---~i~~k~ld~~k~e~asg~~--vrq~--i~lk-------~GI~~d~AKkIvK~IKd 114 (160)
T PF04461_consen 49 TAEDEFKLKQVKDILRSKLIKR---GIDLKALDFGKIESASGGT--VRQV--IKLK-------QGIDQDTAKKIVKLIKD 114 (160)
T ss_dssp EESSHHHHHHHHHHHHHHHHHT---T--GGGEE--SS-EEETTE--EEEE--EEE---------S--HHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHHHc---CCCHHHcCCCCCccccCCE--EEEE--EEee-------cccCHHHHHHHHHHHHh
Confidence 4455667788888888777652 23444444322221 1111 1111 1112 34578899999999999
Q ss_pred cCCCCCcccCCCeEEEeC
Q psy3752 912 ANLGLNPTIQGNIIYVSI 929 (1012)
Q Consensus 912 s~l~~~p~~~~~~i~v~i 929 (1012)
+.|-++++.+|+.+||+=
T Consensus 115 ~klKVqa~IQgd~vRVtg 132 (160)
T PF04461_consen 115 SKLKVQAQIQGDQVRVTG 132 (160)
T ss_dssp H--SEEEEEETTEEEEEE
T ss_pred cCCceeEEecCcEEEEec
Confidence 999999999999999874
No 452
>PF15605 Toxin_52: Putative toxin 52
Probab=21.71 E-value=3.5e+02 Score=24.90 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy3752 950 ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 1003 (1012)
Q Consensus 950 ~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~ 1003 (1012)
++-..+||+++. +++..++..+|++...-++.++++.+ .++++|+++|+
T Consensus 54 da~~GL~n~~~~----le~~L~np~l~~~~r~~lq~~l~ea~-~~l~kiE~~~~ 102 (103)
T PF15605_consen 54 DAYRGLVNRKRT----LEGSLKNPNLSGRTRELLQSKLNEAN-NYLDKIEDFFP 102 (103)
T ss_pred HHHHHHHHHHHH----HHHhcCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 455567777664 55555688889999888999988765 57888988875
No 453
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.58 E-value=5.4e+02 Score=27.42 Aligned_cols=92 Identities=18% Similarity=0.121 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcCCEEE-EEecChhhHHHHHHHHHHcCCCeecCcccC-ccccChHHHHHHHHHHHHHHhhhccCcccCC
Q psy3752 219 KAIRYIYQLGFSKGTLL-FVGTKRQARGVIANEAVRAGMPFIDQRWLG-GLLTNFKTIKTSIQRLKEMDLFITNGSIRKL 296 (1012)
Q Consensus 219 ~a~~~i~~~~~~~~~il-fv~t~~~~~~~v~~~a~~~~~~~v~~rw~~-G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1012)
.|......+.+.|=+++ +.-+.+.+.+.|+.+.+..+..|= +-++| ||.+|..+.+..+.
T Consensus 28 ~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e~a~~a~~----------------- 89 (222)
T PRK07114 28 VAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELP-GMILGVGSIVDAATAALYIQ----------------- 89 (222)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCC-CeEEeeEeCcCHHHHHHHHH-----------------
Confidence 44455555544443333 333445666666666543322110 23466 88888776544332
Q ss_pred CHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecC
Q psy3752 297 SKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDT 356 (1012)
Q Consensus 297 ~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt 356 (1012)
-..=|++.|.-+...++.|+..|||.+-=|=|
T Consensus 90 ----------------------------aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~T 121 (222)
T PRK07114 90 ----------------------------LGANFIVTPLFNPDIAKVCNRRKVPYSPGCGS 121 (222)
T ss_pred ----------------------------cCCCEEECCCCCHHHHHHHHHcCCCEeCCCCC
Confidence 23347889999999999999999998644433
No 454
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=21.24 E-value=1.6e+02 Score=26.88 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=32.7
Q ss_pred CceEEEEecCCCCC----chhhhcCCCCCccEEEeCCEeeccHHHHHHH
Q psy3752 1 MDFEIRDIDLFNKP----DNIFRMNPYGQVPILVERDLILYESNIINEY 45 (1012)
Q Consensus 1 I~ye~~~Vd~~~~~----~~~~~inP~gkVPvL~ddg~~I~ES~aIl~Y 45 (1012)
++|+.+.||-.+.. +.+.+.+...+||.+..+|..+.....+...
T Consensus 33 i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 33 VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 57888877754321 2355667889999999999999887776664
No 455
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=21.17 E-value=1.9e+02 Score=32.06 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCCEEEEeCCCCc--hhHHHHHHhcCCCeEEEecCCCCCC-cceeeccCCCCchhhHHHHhhhhhh
Q psy3752 323 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPD-GINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~--~~ai~Ea~~l~iP~i~l~Dt~~~~~-~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
+.||.+|+..+..+ ...++++...+||+|.+ |+..+.. ...|.-+ |+..+-+.....|.+
T Consensus 53 ~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~-d~~~~~~~~~~~V~~---d~~~~g~~~~~~L~~ 115 (302)
T TIGR02634 53 RGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAY-DRLINDADIDFYLSF---DNEKVGEMQARAVLE 115 (302)
T ss_pred cCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEe-cCcCCCCCccEEEec---CHHHHHHHHHHHHHh
Confidence 46999998765433 57889999999999977 6554322 2344443 334444444454443
No 456
>PRK02858 germination protease; Provisional
Probab=21.12 E-value=71 Score=36.13 Aligned_cols=57 Identities=26% Similarity=0.421 Sum_probs=37.2
Q ss_pred CCCCEEEEeCC--------------------------CCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhh
Q psy3752 323 IIPDAIFIIDV--------------------------GYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKS 376 (1012)
Q Consensus 323 ~~P~~~iv~~~--------------------------~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~s 376 (1012)
-.||+||.+|. .+.+.++.+ ..|||||||| -=|+-||.+.-+|| +
T Consensus 183 ~KPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~-etLGVPVIAI----GVPTVVdA~tI~~D----t 253 (369)
T PRK02858 183 TKPDFVIAIDALAARSIERVNTTIQISDTGIHPGSGVGNKRKELSK-ETLGIPVIAI----GVPTVVDAVTITSD----T 253 (369)
T ss_pred hCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCH-HHcCCCEEEE----cCCeeechHHHHHH----H
Confidence 38999999993 255677776 6788888888 22556666666663 4
Q ss_pred HHHHhhhhhhhh
Q psy3752 377 IALYTKGIVDAF 388 (1012)
Q Consensus 377 i~l~~~~l~~ai 388 (1012)
+.+++.-|.+..
T Consensus 254 id~~l~~~~~~~ 265 (369)
T PRK02858 254 IDFILKHFGREM 265 (369)
T ss_pred HHHHHHHHhhhh
Confidence 555555554443
No 457
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=21.01 E-value=1.8e+02 Score=31.07 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhh
Q psy3752 324 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 386 (1012)
Q Consensus 324 ~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ 386 (1012)
.+|.+|+.....+...+.++...+||+|.+ |...+...+.|.-+-| ..+.++....|.+
T Consensus 55 ~vdgiii~~~~~~~~~~~~l~~~~ipvV~~-~~~~~~~~~~~v~~d~---~~~~~~~~~~l~~ 113 (268)
T cd06298 55 QVDGIIFMGGKISEEHREEFKRSPTPVVLA-GSVDEDNELPSVNIDY---KKAAFEATELLIK 113 (268)
T ss_pred cCCEEEEeCCCCcHHHHHHHhcCCCCEEEE-ccccCCCCCCEEEECc---HHHHHHHHHHHHH
Confidence 689999886655567888888899999888 4332222355554443 3444555555543
No 458
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=20.82 E-value=1.3e+02 Score=32.89 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=23.7
Q ss_pred CCCCCCCEEEEeC-CCCch------hHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCch
Q psy3752 320 NMNIIPDAIFIID-VGYHK------GAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSA 374 (1012)
Q Consensus 320 ~~~~~P~~~iv~~-~~~~~------~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~ 374 (1012)
.+...||+||++. -..+. .+.....++++| -|.||||.|-.
T Consensus 51 ~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~P--------------v~~v~GNHD~~ 98 (275)
T PRK11148 51 AQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKP--------------CVWLPGNHDFQ 98 (275)
T ss_pred hhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCc--------------EEEeCCCCCCh
Confidence 3445799999974 22221 222333444444 48899998863
No 459
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=20.79 E-value=69 Score=35.11 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=12.9
Q ss_pred HHHHhcCCCeEEEecCCC
Q psy3752 341 SEAIKLNIPIIGVVDTNH 358 (1012)
Q Consensus 341 ~Ea~~l~iP~i~l~Dt~~ 358 (1012)
+-|.+.|+|+|.++||--
T Consensus 144 ~~AekF~lPiitfIDT~G 161 (317)
T COG0825 144 KLAEKFGLPIITFIDTPG 161 (317)
T ss_pred HHHHHhCCCEEEEecCCC
Confidence 456777888888888753
No 460
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.55 E-value=4.8e+02 Score=26.44 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3752 936 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009 (1012)
Q Consensus 936 ~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~-~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel 1009 (1012)
.|++.+..-=..+++.+...-..+.++.+.+...+... .+-++-....++..+.+.++--++++.+....+++|
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I 123 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEI 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443334456666655556666655555544322 233444444555555566666666666666555554
No 461
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.48 E-value=1.6e+02 Score=31.46 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=37.4
Q ss_pred CCCCEEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCC-CcceeeccCCCCchhhHHHHhhhh
Q psy3752 323 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGNDDSAKSIALYTKGI 384 (1012)
Q Consensus 323 ~~P~~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~-~~i~~~IP~N~~s~~si~l~~~~l 384 (1012)
+.+|.+|+..+..+...++++...+||+|.+ |+..++ ..+.+.-+-| ....+.....+
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~i-~~~~~~~~~~~~v~~d~---~~~~~~a~~~l 112 (270)
T cd06296 54 RRTDGVILVTPELTSAQRAALRRTGIPFVVV-DPAGDPDADVPSVGATN---WAGGLAATEHL 112 (270)
T ss_pred cCCCEEEEecCCCChHHHHHHhcCCCCEEEE-ecccCCCCCCCEEEeCc---HHHHHHHHHHH
Confidence 3689998887765667799999999999987 554432 3455544444 33444444433
No 462
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=20.41 E-value=3.3e+02 Score=31.07 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCCEEEEeCCC-CchhHHHHHHhcCCCeEEE
Q psy3752 324 IPDAIFIIDVG-YHKGAVSEAIKLNIPIIGV 353 (1012)
Q Consensus 324 ~P~~~iv~~~~-~~~~ai~Ea~~l~iP~i~l 353 (1012)
.||+|++++.. -.......|.+.|||++-.
T Consensus 85 kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 85 PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 79999998732 2444566788899999855
No 463
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=20.34 E-value=2.8e+02 Score=27.76 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=55.7
Q ss_pred EEEEEecChhhHHHHHHHHHHcCCCeecCcccCccccChHHHHHHHHHHHH--HHhhhccC--cccCCCHHHHHHHHHHH
Q psy3752 233 TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKE--MDLFITNG--SIRKLSKKEALLFYRKQ 308 (1012)
Q Consensus 233 ~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~--~~~~~~~~--~~~~~~kk~~~~~~~~~ 308 (1012)
+|.|||..+-++..+ |-.-+|...-.+.| ||+-+....- .++ +.. ++-.--.| .+...++.|... +++
T Consensus 2 ~ialvG~PNvGKStL--fN~Ltg~~~~v~n~-pG~Tv~~~~g--~~~-~~~~~~~lvDlPG~ysl~~~s~ee~v~--~~~ 73 (156)
T PF02421_consen 2 RIALVGNPNVGKSTL--FNALTGAKQKVGNW-PGTTVEKKEG--IFK-LGDQQVELVDLPGIYSLSSKSEEERVA--RDY 73 (156)
T ss_dssp EEEEEESTTSSHHHH--HHHHHTTSEEEEES-TTSSSEEEEE--EEE-ETTEEEEEEE----SSSSSSSHHHHHH--HHH
T ss_pred EEEEECCCCCCHHHH--HHHHHCCCceecCC-CCCCeeeeeE--EEE-ecCceEEEEECCCcccCCCCCcHHHHH--HHH
Confidence 588999999887764 33446666556677 5554443210 000 000 00000123 223344444332 211
Q ss_pred HHHHhhhcCccCCCCCCCEEEEe-CCC---CchhHHHHHHhcCCCeEEEec
Q psy3752 309 MKLNRVIGGIKNMNIIPDAIFII-DVG---YHKGAVSEAIKLNIPIIGVVD 355 (1012)
Q Consensus 309 ~kl~~~~~g~~~~~~~P~~~iv~-~~~---~~~~ai~Ea~~l~iP~i~l~D 355 (1012)
-. ...||+++++ |.. .+.....+...+|+|+|-+++
T Consensus 74 l~-----------~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN 113 (156)
T PF02421_consen 74 LL-----------SEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLN 113 (156)
T ss_dssp HH-----------HTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred Hh-----------hcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 11 2479988774 654 556677888899999998875
No 464
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=20.25 E-value=2.1e+02 Score=33.55 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=59.3
Q ss_pred ceeeEeecCCceEEEeecCcccHHHHHHHHHhcCCCCCccc-CCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy3752 880 KIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTI-QGNIIYVSIPPLTKERREEIVKLIKNITEETK 952 (1012)
Q Consensus 880 ~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~p~~-~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k 952 (1012)
+.-||-+++||.+.-.|+++..+....+++...++++.|.. -+..+ +.+-.+.+|.|+.-++..+...+.|.
T Consensus 156 ~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 156 QAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred CEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999876653 33444 88888999999998888777666543
No 465
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=20.24 E-value=6.8e+02 Score=22.95 Aligned_cols=18 Identities=0% Similarity=0.381 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy3752 954 SIRKIRRDSNENLKKLLK 971 (1012)
Q Consensus 954 ~iR~iR~~~~~~~k~~~k 971 (1012)
.|+..|.++.+.++....
T Consensus 30 ~lk~Ak~eA~~ei~~~r~ 47 (105)
T PF03179_consen 30 RLKQAKEEAEKEIEEFRA 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 366666666666655543
No 466
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=20.20 E-value=7.2e+02 Score=27.46 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcC-CEEEEEe-------cChhhHHHHHHHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccC
Q psy3752 220 AIRYIYQLGFSK-GTLLFVG-------TKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNG 291 (1012)
Q Consensus 220 a~~~i~~~~~~~-~~ilfv~-------t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~ 291 (1012)
+......+..+| ++|.|++ +...-....++..+..|..+....+..|.++ ...-.....++
T Consensus 164 ~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l---------- 232 (329)
T TIGR01481 164 TKEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYS-YDAGYKAFAEL---------- 232 (329)
T ss_pred HHHHHHHHHHCCCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCC-hHHHHHHHHHH----------
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCC------CeEEEecCC----CCCC
Q psy3752 292 SIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI------PIIGVVDTN----HSPD 361 (1012)
Q Consensus 292 ~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~i------P~i~l~Dt~----~~~~ 361 (1012)
+...|+.||..+-.--.-+++.+...|+ -+||+-|+. ..|.
T Consensus 233 -----------------------------l~~~p~ai~~~~d~~A~g~~~al~~~g~~vP~dvsvvgfd~~~~~~~~~p~ 283 (329)
T TIGR01481 233 -----------------------------KGSLPTAVFVASDEMAAGILNAAMDAGIKVPEDLEVITSNNTRLTEMVRPQ 283 (329)
T ss_pred -----------------------------hCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeCCchHHhhcCCC
Q ss_pred cceeeccCCCCchhhHHHHhhhh
Q psy3752 362 GINYVIPGNDDSAKSIALYTKGI 384 (1012)
Q Consensus 362 ~i~~~IP~N~~s~~si~l~~~~l 384 (1012)
+.+.-.|...-+..++.+++..+
T Consensus 284 lttv~~~~~~~g~~Av~~L~~~i 306 (329)
T TIGR01481 284 LSTIIQPLYDIGAVAMRLLTKYM 306 (329)
T ss_pred CcEEecCHHHHHHHHHHHHHHHh
No 467
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=20.03 E-value=1.5e+02 Score=33.10 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=31.3
Q ss_pred CCCEEEEeCCCC-chhHHHHHHhcCCCeEEEecCCCCCCcceeeccCC
Q psy3752 324 IPDAIFIIDVGY-HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGN 370 (1012)
Q Consensus 324 ~P~~~iv~~~~~-~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N 370 (1012)
..|.+|+..... +...+.++...+||+|. +|.+.+...+++..+-|
T Consensus 116 ~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~-~~~~~~~~~~~~V~~dn 162 (327)
T TIGR02417 116 QVDALIVASCMPPEDAYYQKLQNEGLPVVA-LDRSLDDEHFCSVISDD 162 (327)
T ss_pred CCCEEEEeCCCCCChHHHHHHHhcCCCEEE-EccccCCCCCCEEEeCc
Confidence 578888875443 45678888889999985 56654433466666544
Done!