RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3752
(1012 letters)
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 360 bits (926), Expect = e-117
Identities = 117/219 (53%), Positives = 163/219 (74%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
+++++AGVHFGHQTR WNPKM YIFG RN IHII+L+KT+ M ++A ++ + + G
Sbjct: 7 KQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGK 66
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
+LFVGTK+QA+ IA EA R GMP+++ RWLGG+LTNFKTI+ SI+RLKE++ +G+
Sbjct: 67 ILFVGTKKQAQEAIAEEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTF 126
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
KL+KKEAL+ R+ KL + +GGIK+M +PDA+F++D AV EA KL IP++ +
Sbjct: 127 EKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDALFVVDPNKEHIAVKEARKLGIPVVAI 186
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
VDTN PDG++Y IPGNDD+ +SI LYT I DA L+ +
Sbjct: 187 VDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGR 225
>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the
microbial/chloroplast uridine monophosphate kinase
(uridylate kinase) enzyme that catalyzes UMP
phosphorylation and plays a key role in pyrimidine
nucleotide biosynthesis; regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinase of E.
coli (Ec) is known to function as a homohexamer, with
GTP and UTP being allosteric effectors. Like other
related enzymes (carbamate kinase, aspartokinase, and
N-acetylglutamate kinase) the E. coli and most bacterial
and chloroplast UMPKs (this CD) have a conserved,
N-terminal, lysine residue proposed to function in the
catalysis of the phosphoryl group transfer, whereas most
archaeal UMPKs appear to lack this residue and the
Pyrococcus furiosus structure has an additional Mg ion
bound to the ATP molecule which is proposed to function
as the catalysis instead. Members of this CD belong to
the Amino Acid Kinase Superfamily (AAK).
Length = 231
Score = 337 bits (868), Expect = e-109
Identities = 122/223 (54%), Positives = 163/223 (73%)
Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
GEAL + + I+ ++ I EI E+V G+E+AIV+GGGNI RG S +DR+TAD
Sbjct: 9 GEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATAD 68
Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
YMGMLAT+IN+LAL D L G+ + VMSAI ++ E YI AI++LE+G+VVIFAGG
Sbjct: 69 YMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGG 128
Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
GNPFFTTDT AALRA EI A++ILKATKVDG+Y++DP K +A Y +T+DEV+SK L
Sbjct: 129 TGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGL 188
Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822
++MD+TAF+ CRD LPI VF+I + G L + ++G+ GTL+
Sbjct: 189 KVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231
>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 320 bits (822), Expect = e-102
Identities = 118/222 (53%), Positives = 161/222 (72%)
Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
GEAL + I+ ++ I EI E+V G+E+AIV+GGGNI RG +DR+TAD
Sbjct: 9 GEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATAD 68
Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
YMGMLAT++N+LAL D L ++G+ + V SAI + + E YI AI++LE+G+VVIFA G
Sbjct: 69 YMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAG 128
Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
GNPFFTTDT AALRA EI A+++LKAT VDG+Y++DP K A Y ++T+DEV+ K L
Sbjct: 129 TGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL 188
Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
++MD+TA S RD K+PI VF++ K G LKRV++G++ GTLV
Sbjct: 189 KVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLV 230
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 300 bits (771), Expect = 6e-95
Identities = 113/251 (45%), Positives = 165/251 (65%), Gaps = 3/251 (1%)
Query: 172 PAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSK 231
+++++AGVHFGHQTR WNPKM +IFG RN IHII+L+KTL +A +++ ++ +
Sbjct: 5 SMKQLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANG 64
Query: 232 GTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNG 291
G +LFVGTK+QA+ + A R G +++ RWLGG+LTNFKTI+ SI+RLKE++ +G
Sbjct: 65 GKILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG 124
Query: 292 SIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPII 351
L+KKEAL+ R+ KL + +GGIK+M +PD +F+ID K AV EA KL IP++
Sbjct: 125 -FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGIPVV 183
Query: 352 GVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKA 411
+VDTN PDG++YVIPGNDD+ +SIAL + A L+ + G + A I E ++
Sbjct: 184 ALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGR--GGALDEEEAAIEEDEEV 241
Query: 412 LIEANGKLSKA 422
+ +
Sbjct: 242 EEFEAKEEAAE 252
>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase. This protein, also called
UMP kinase, converts UMP to UDP by adding a phosphate
from ATP. It is the first step in pyrimidine
biosynthesis. GTP is an allosteric activator. In a large
fraction of all bacterial genomes, the gene tends to be
located immediately downstream of elongation factor Ts
and upstream of ribosome recycling factor. A related
protein family, believed to be equivalent in function
and found in the archaea and in spirochetes, is
described by a separate model, TIGR02076 [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 232
Score = 298 bits (766), Expect = 2e-94
Identities = 128/222 (57%), Positives = 157/222 (70%)
Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
GEAL + I+ + I +EI E+V GIE+ IVIGGGNI RG+S IDR +AD
Sbjct: 10 GEALAGESQFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAAELGIDRVSAD 69
Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
YMGMLAT+IN LAL D L K G+ + V+SAIS+ + ESYI AIK+LE+GKVVIF+GG
Sbjct: 70 YMGMLATVINGLALRDALEKLGLKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGG 129
Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
GNPFFTTDT AALRA EI A++ILK T VDG+Y +DP K A Y IT++E + K L
Sbjct: 130 TGNPFFTTDTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKYDTITYNEALKKNL 189
Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
++MD TAF+ RD LPI VF+I K GALK+VI GK GTLV
Sbjct: 190 KVMDLTAFALARDNNLPIVVFNIDKPGALKKVILGKGIGTLV 231
>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the
microbial/chloroplast uridine monophosphate kinase
(uridylate kinase) enzyme that catalyzes UMP
phosphorylation and plays a key role in pyrimidine
nucleotide biosynthesis. Regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinases of E.
coli (Ec) and Pyrococcus furiosus (Pf) are known to
function as homohexamers, with GTP and UTP being
allosteric effectors. Like other related enzymes
(carbamate kinase, aspartokinase, and N-acetylglutamate
kinase) the E. coli and most bacterial UMPKs have a
conserved, N-terminal, lysine residue proposed to
function in the catalysis of the phosphoryl group
transfer, whereas most archaeal UMPKs appear to lack
this residue and the Pyrococcus furiosus structure has
an additional Mg ion bound to the ATP molecule which is
proposed to function as the catalysis instead. Also
included in this CD are the alpha and beta subunits of
the Mo storage protein (MosA and MosB) characterized as
an alpha4-beta4 octamer containing an ATP-dependent,
polynuclear molybdenum-oxide cluster. These and related
sequences in this CD are members of the Amino Acid
Kinase Superfamily (AAK).
Length = 229
Score = 286 bits (734), Expect = 6e-90
Identities = 113/223 (50%), Positives = 160/223 (71%), Gaps = 1/223 (0%)
Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
GEAL G+ I+ ++K I EI E+V G+E+AIV+GGGNI RG + + R+TAD
Sbjct: 8 GEALA-GEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATAD 66
Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
Y+GMLAT++N+LAL D L K G+ + VMSAI ++ E YI AI++LE+G++VIF GG
Sbjct: 67 YIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGG 126
Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
GNP FTTDT AALRA EI A+++LKAT VDG+Y++DP K A Y +I++DE++ K L
Sbjct: 127 TGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL 186
Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822
++MD+TA + CR K+PI VF+ +K G L R ++G++ GTL+
Sbjct: 187 KVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229
>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and
metabolism].
Length = 238
Score = 286 bits (733), Expect = 1e-89
Identities = 114/223 (51%), Positives = 156/223 (69%), Gaps = 1/223 (0%)
Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
GEAL + I+ ++ I +EI E+V G+E+A+V+GGGNI RG +DR TAD
Sbjct: 14 GEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTAD 73
Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
YMGMLAT++N+LAL D L + G+ + V SAI++ + E Y AI++LE+G+VVIF GG
Sbjct: 74 YMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGG 133
Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKAT-KVDGIYNSDPNKCLSAIIYKKITFDEVISKK 778
GNP FTTDT AALRA EI+A+++LKAT KVDG+Y++DP K A Y +T+DEV+
Sbjct: 134 TGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIG 193
Query: 779 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
L++MD TAFS RD +PI VF+I K G LKR ++G+ GT+V
Sbjct: 194 LKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIV 236
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type. This
model describes the bacterial, ribosomal, and
chloroplast forms of ribosomal protein S2. TIGR01012
describes the archaeal and cytosolic forms [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 225
Score = 283 bits (727), Expect = 6e-89
Identities = 112/218 (51%), Positives = 160/218 (73%)
Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
+++AGVHFGHQTR WNPKM +IFG RN IHII+L+KTL + ++A ++ + + G +
Sbjct: 6 DLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKI 65
Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
LFVGTK+QA+ +I EA R GM +++QRWLGG+LTNFKTI+ SI++LK+++ +G+
Sbjct: 66 LFVGTKKQAKEIIKEEAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFD 125
Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
L+KKEAL+ R++ KL + +GGIK+M +PD +F+ID K AV+EA KL IP++ +V
Sbjct: 126 DLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVKEKIAVAEARKLGIPVVAIV 185
Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
DTN PD ++Y IPGNDD+ +SI L T I DA L+ K
Sbjct: 186 DTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK 223
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2.
Length = 205
Score = 265 bits (681), Expect = 9e-83
Identities = 109/216 (50%), Positives = 141/216 (65%), Gaps = 12/216 (5%)
Query: 177 MQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLF 236
++AGVHFGHQTR WNPKM YI+G RN IHII+LEKTL KA +I ++ G +LF
Sbjct: 2 LEAGVHFGHQTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRKAANFIKEIAAKGGKILF 61
Query: 237 VGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKL 296
VGTK+QA+ + A R G +++ RWLGG LTN+KTIK SI+RL+E L
Sbjct: 62 VGTKKQAQEAVKKFAKRTGQFYVNGRWLGGTLTNWKTIKKSIKRLEE------------L 109
Query: 297 SKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDT 356
SKKEAL R+ KL + +GGIKNM +PD + ++D A+ EA KL IP+I +VDT
Sbjct: 110 SKKEALKLKRELEKLEKYLGGIKNMKKLPDLVIVVDPNKEHIAIKEASKLGIPVIAIVDT 169
Query: 357 NHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
N PD I+Y IPGNDDS +SIAL + A L+ +
Sbjct: 170 NCDPDLIDYPIPGNDDSIRSIALILWLLARAILEGR 205
>gnl|CDD|236491 PRK09377, tsf, elongation factor Ts; Provisional.
Length = 290
Score = 251 bits (645), Expect = 2e-76
Identities = 89/213 (41%), Positives = 130/213 (61%), Gaps = 4/213 (1%)
Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAI 449
A V ELR +T A +M+CKKAL EA+G + KA E LR K K + R A +G++A
Sbjct: 5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAA 64
Query: 450 YISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVD 509
+ G LVE+N ETDFVAKN +F + ++A+ P +++ L LK+ TV+
Sbjct: 65 KVDGNKGVLVEVNSETDFVAKNEDFQALANEVAEAALAAKPADVEALLALKLDG--GTVE 122
Query: 510 EKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGDNESAVKDVAMHI 567
E ELI++IGENI +RRF + + ++ SYLH +IGV+V G +E KD+AMHI
Sbjct: 123 EARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDEELAKDIAMHI 182
Query: 568 AAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 600
AAM P LS + +P +++EKE +A +A++ G
Sbjct: 183 AAMNPEYLSREDVPAEVVEKEREIAKEQAKEEG 215
>gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion
protein; Provisional.
Length = 326
Score = 246 bits (631), Expect = 6e-74
Identities = 103/216 (47%), Positives = 149/216 (68%)
Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
++++AGVHFGHQ+ WNPKM+ YIFG RN IHII+L +T+ + +A++ + G +
Sbjct: 3 QLLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRV 62
Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
LFVGTKRQA+ +A+ A R+ F++ RWLGG LTN+KTI SIQRL+++D +++G
Sbjct: 63 LFVGTKRQAQDAVADAAKRSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEAN 122
Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
+KKE L R++ KL+R +GGIK+M +PD +F+ID A+ EA +L IP+ +V
Sbjct: 123 GYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIV 182
Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 390
DTN PDGI Y +PGNDD+ ++IALY I A +D
Sbjct: 183 DTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAID 218
>gnl|CDD|178850 PRK00083, frr, ribosome recycling factor; Reviewed.
Length = 185
Score = 229 bits (588), Expect = 7e-70
Identities = 88/183 (48%), Positives = 132/183 (72%)
Query: 829 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
I++I K+ +++M ++ LK L K+RTGRAN +LD I+V Y+ T L ++A+I++
Sbjct: 2 INEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPE 61
Query: 889 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
+ T+ IQP++K M I+KAI ++LGLNP+ G +I + IPPLT+ERR+E+VK +K
Sbjct: 62 ARTLLIQPWDKSMLKAIEKAIRASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEA 121
Query: 949 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
EE K++IR IRRD+N+ LKKL K+K +S D RA+ +IQKLTDK+I +I++LL KEKE
Sbjct: 122 EEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELLAAKEKE 181
Query: 1009 ILT 1011
I+
Sbjct: 182 IME 184
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli
RPS2 is essential for the binding of ribosomal protein
S1 to the 30s ribosomal subunit. In humans, most likely
in all vertebrates, and perhaps in all metazoans, the
protein also functions as the 67 kDa laminin receptor
(LAMR1 or 67LR), which is formed from a 37 kDa
precursor, and is overexpressed in many tumors. 67LR is
a cell surface receptor which interacts with a variety
of ligands, laminin-1 and others. It is assumed that the
ligand interactions are mediated via the conserved
C-terminus, which becomes extracellular as the protein
undergoes conformational changes which are not well
understood. Specifically, a conserved palindromic motif,
LMWWML, may participate in the interactions. 67LR plays
essential roles in the adhesion of cells to the basement
membrane and subsequent signalling events, and has been
linked to several diseases. Some evidence also suggests
that the precursor of 67LR, 37LRP is also present in the
nucleus in animals, where it appears associated with
histones.
Length = 193
Score = 228 bits (584), Expect = 3e-69
Identities = 95/211 (45%), Positives = 127/211 (60%), Gaps = 22/211 (10%)
Query: 179 AGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVG 238
AGVH GH+TR WNPKM YI+G RN IHII+LEKTL A+ +I + G +LFVG
Sbjct: 4 AGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVG 63
Query: 239 TKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSK 298
TK QA+ + A R G +++ RWLGG LTN+KTI+ SI+RLK+++
Sbjct: 64 TKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLE------------- 110
Query: 299 KEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNH 358
+ KL + +GGIK+M +PD + ++D A+ EA KL IP+I +VDTN
Sbjct: 111 ---------KEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161
Query: 359 SPDGINYVIPGNDDSAKSIALYTKGIVDAFL 389
PD I+Y IP NDDS +SIAL + A L
Sbjct: 162 DPDLIDYPIPANDDSIRSIALILWLLARAIL 192
>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2.
Length = 230
Score = 223 bits (570), Expect = 1e-66
Identities = 93/218 (42%), Positives = 135/218 (61%), Gaps = 4/218 (1%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
E++++AGVHFGHQTR WNPKM+ YI+ RN IHIINL +T +A ++
Sbjct: 11 EEMLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKK 70
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
LFVGTK+QA ++A+ A+RA ++++RWLGG+LTN+ T KT +Q+L+++ + G
Sbjct: 71 FLFVGTKKQAADLVASAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLF 130
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
+L KKEA + R+ +L + +GGIK M +PD + IID A+ E KL IP I +
Sbjct: 131 NRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVIIIDQQEEYTALRECRKLGIPTISI 190
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDA 391
+DTN PD + IP NDD+ SI L I++ A
Sbjct: 191 LDTNCDPDLADIPIPANDDAIASIKL----ILNKLTTA 224
>gnl|CDD|223342 COG0264, Tsf, Translation elongation factor Ts [Translation,
ribosomal structure and biogenesis].
Length = 296
Score = 221 bits (565), Expect = 4e-65
Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 7/216 (3%)
Query: 391 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 450
A V ELR KT A +M+CKKAL EANG + KA E LR K K + R A +G+IA
Sbjct: 6 AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAK 65
Query: 451 ISE--KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTV 508
+ K LVE+NCETDFVAKN EF + + KIAK E P ++++L TV
Sbjct: 66 VDGDGKKAVLVEVNCETDFVAKNAEFQELANKIAKAALEKKPADVEELKAAFE-PGGKTV 124
Query: 509 DEKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGDNES--AVKDVA 564
+E+ LI++IGENI +RRF + + + ++ SYLH N +IGV+V G KD+A
Sbjct: 125 EEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNGRIGVLVALKGGAADEELAKDIA 184
Query: 565 MHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 600
MHIAAM P LS + +P +++EKE + + + + G
Sbjct: 185 MHIAAMNPQYLSREDVPAEVVEKEREIFLAQLKAEG 220
>gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal
structure and biogenesis].
Length = 187
Score = 211 bits (540), Expect = 3e-63
Identities = 88/186 (47%), Positives = 136/186 (73%)
Query: 826 IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANIT 885
+M+I++I K+ ++KM ++ LK L K+RTGRAN +LD I V+Y+ T L ++A+I+
Sbjct: 1 MMMINEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASIS 60
Query: 886 LFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIK 945
+ + T+ I+PF+K M I+KAI +NLGLNP GN+I V +PPLT+ERR+E+VK+ K
Sbjct: 61 VPEARTLVIKPFDKSMVKAIEKAILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAK 120
Query: 946 NITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 1005
EE K+++R IRRD+N+ +KKL K+K +S D +A+ +IQKLTD++I +I++LL +K
Sbjct: 121 KYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELLKDK 180
Query: 1006 EKEILT 1011
EKEI+
Sbjct: 181 EKEIME 186
>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 205 bits (524), Expect = 2e-60
Identities = 96/226 (42%), Positives = 137/226 (60%), Gaps = 10/226 (4%)
Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
GEAL + + +++EI +V G ++ IVIG GN+ RG+ +++ + + AD
Sbjct: 9 GEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGV--ELKELSPTRAD 66
Query: 660 YMGMLATIINSLALFDILNKSG----IISHVMSAISIEKFLESYIPLNAIKYLEEGKVVI 715
+GML T+IN+L L DI KSG I+S +++ S+E I L Y G +VI
Sbjct: 67 QIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIEL----YFRAGYIVI 122
Query: 716 FAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI 775
FAGG NPFFTTDT AALRA E+KA+I++KATKVDGIY+ DP K A +TF E I
Sbjct: 123 FAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAI 182
Query: 776 SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
L++MD+ AFS C+ + I V + + G L + ++G+N GTLV
Sbjct: 183 KMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228
>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor. The ribosome recycling
factor (RRF / ribosome release factor) dissociates the
ribosome from the mRNA after termination of translation,
and is essential bacterial growth. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis.
Length = 165
Score = 199 bits (508), Expect = 4e-59
Identities = 82/164 (50%), Positives = 119/164 (72%)
Query: 847 LKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIK 906
LK+ L K+RTGRAN +LD I+V Y+ T L ++A+I++ + T+ I P++K + I+
Sbjct: 2 LKKELSKIRTGRANPSLLDGIRVDYYGSPTPLNQLASISVPEARTLLITPWDKSLIKAIE 61
Query: 907 KAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENL 966
KAI ++LGLNP G +I + IPPLT+ERR+E+VK K + EE K++IR IRRD+N+ L
Sbjct: 62 KAILASDLGLNPQNDGQVIRIPIPPLTEERRKELVKQAKKLAEEAKVAIRNIRRDANDKL 121
Query: 967 KKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 1010
KKL K+K +S D RA+ +IQKLTDK+I +I++LL KEKEI+
Sbjct: 122 KKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEKEIM 165
>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional.
Length = 249
Score = 191 bits (485), Expect = 7e-55
Identities = 103/223 (46%), Positives = 143/223 (64%), Gaps = 1/223 (0%)
Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQN-IDRSTA 658
GE+L + IN + II++I + + G+ELA+V+GGGNI RG N I R+TA
Sbjct: 24 GESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATA 83
Query: 659 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 718
D MGM+AT+IN+LAL D+L G+ + V SA ++ L+ + L +G+V+IFAG
Sbjct: 84 DSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAG 143
Query: 719 GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 778
G GNPF TTDTTA+LRA EI A+ +LKAT V+G+Y+ DPNK A + K+TF EV+SK+
Sbjct: 144 GTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKE 203
Query: 779 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
L +MD AF+ CRD +PI VF + + AL + GT V
Sbjct: 204 LNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWV 246
>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis. RRF is believed to bind the ribosome at the
A-site in a manner that mimics tRNA, but the specific
mechanisms remain unclear. RRF is essential for
bacterial growth. It is not necessary for cell growth in
archaea or eukaryotes, but is found in mitochondria or
chloroplasts of some eukaryotic species.
Length = 179
Score = 183 bits (466), Expect = 3e-53
Identities = 88/179 (49%), Positives = 128/179 (71%)
Query: 832 IKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHT 891
I K K+KM +++ LKE L K+RTGRAN +LD+I V+Y+ T L ++A+I++ T
Sbjct: 1 ILKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRT 60
Query: 892 ISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEET 951
I I PF+K I+KAI ++LGLNP G +I V++PPLT+ERR+E+VK K I EE
Sbjct: 61 IVINPFDKSAIKAIEKAILNSDLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEA 120
Query: 952 KISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 1010
K++IR IRRD+N+ +KKL K K +S D +A+ D+QKLTD++I +I++LL +KEKE+L
Sbjct: 121 KVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKELL 179
>gnl|CDD|129587 TIGR00496, frr, ribosome recycling factor. This model finds only
eubacterial proteins. Mitochondrial and/or chloroplast
forms might be expected but are not currently known. This
protein was previously called ribosome releasing factor.
By releasing ribosomes from mRNA at the end of protein
biosynthesis, it prevents inappropriate translation from
3-prime regions of the mRNA and frees the ribosome for
new rounds of translation. EGAD|53116|YHR038W is part of
the frr superfamily [Protein synthesis, Translation
factors].
Length = 176
Score = 170 bits (432), Expect = 1e-48
Identities = 82/175 (46%), Positives = 129/175 (73%)
Query: 837 KQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQP 896
K++M +I+ LK L K+RTGRAN +LD I V+Y+ T L ++A++T+ ++ T+ IQP
Sbjct: 1 KERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQP 60
Query: 897 FEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIR 956
F+K + I+KAI ++LGLNP G++I V+ PPLT+ERR+E+VK K I E+ K+++R
Sbjct: 61 FDKSNINAIEKAIQRSDLGLNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVR 120
Query: 957 KIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILT 1011
+RRD+N+ +KKL K+K +S D E R Q +IQKLTD++I +I+++L +KEKE++
Sbjct: 121 NVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEILKDKEKELME 175
>gnl|CDD|236537 PRK09481, sspA, stringent starvation protein A; Provisional.
Length = 211
Score = 165 bits (419), Expect = 2e-46
Identities = 76/179 (42%), Positives = 110/179 (61%), Gaps = 5/179 (2%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLM 62
EI ++ N P ++ +NPY VP LV+R+L LYES II EY+DERFP+P LM P+
Sbjct: 36 VEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVA 95
Query: 63 RARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLG 122
R +RLM+ EK+ Y L N+ S AR+++R+ L+ +AP+F + Y +
Sbjct: 96 RGESRLMMHRIEKD----WYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMS 151
Query: 123 DEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFSRPSYMESLTPAEKIMQAG 180
+EFS++D +APLLWRL GI LS + +K Y R+F R S++ SLT AE+ M+ G
Sbjct: 152 EEFSLVDCYLAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLG 210
>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional.
Length = 247
Score = 164 bits (417), Expect = 8e-46
Identities = 92/234 (39%), Positives = 141/234 (60%), Gaps = 2/234 (0%)
Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
G AL + NS +++I +EI IV GIE++IVIGGGNI RG + IDR AD
Sbjct: 13 GGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEAD 72
Query: 660 YMGMLATIINSLALFDIL-NKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 718
+G L TIINSL L +L +K+ VM++I E YI L A+ +L+ G +VIF G
Sbjct: 73 NIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGG 132
Query: 719 GIGNPFFTTDTTAALRAAEIKAEIILKATK-VDGIYNSDPNKCLSAIIYKKITFDEVISK 777
G G PF TTD + RA E+ ++ IL A + VDG++ SDP SA +Y+K+ +++V+ +
Sbjct: 133 GNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ 192
Query: 778 KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISD 831
+++MD A RD LP VF+ + G ++R+ G++ GTL+ + +++ +
Sbjct: 193 NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDASLLVHE 246
>gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts. Translational
elongation factor Ts (EF-Ts) catalyzes the exchange of
GTP for the GDP of the EF-Tu.GDP complex as part of the
cycle of translation elongation. This protein is found
in Bacteria, mitochondria, and chloroplasts [Protein
synthesis, Translation factors].
Length = 291
Score = 158 bits (401), Expect = 4e-43
Identities = 83/218 (38%), Positives = 125/218 (57%), Gaps = 13/218 (5%)
Query: 391 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNAKDGV 446
A+ V ELR +T A +M+CKKAL+EANG KA + LR K KK +R A +GV
Sbjct: 6 AQLVKELRERTGAGMMDCKKALVEANGDFEKAIKWLREKGIAKAAKKA----DRVAAEGV 61
Query: 447 IAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLL 506
I + +VE+N ETDFVAKN F +F+ K+ + N L++L +++N
Sbjct: 62 IVLKSDNHKAVIVEVNSETDFVAKNEGFKEFANKLLDELKANPITTLEELQKQELENK-- 119
Query: 507 TVDEKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGD-NESAVKDV 563
E L ++IGENI +RR + + +N+I SYLH N +IGV+VE G +E K +
Sbjct: 120 EKVEYLASLAAKIGENIVLRRVAVLEGQSNVIFSYLHANARIGVLVELKGKADEELAKHL 179
Query: 564 AMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 601
AMH+AA KP + D + ++ ++KE + +A+ G+
Sbjct: 180 AMHVAANKPQFIDQDDVSQEWVKKERQIITDQAELSGK 217
>gnl|CDD|198295 cd03186, GST_C_SspA, C-terminal, alpha helical domain of Stringent
starvation protein A. Glutathione S-transferase (GST)
C-terminal domain family, Stringent starvation protein A
(SspA) subfamily; SspA is a RNA polymerase
(RNAP)-associated protein required for the lytic
development of phage P1 and for stationary phase-induced
acid tolerance of E. coli. It is implicated in survival
during nutrient starvation. SspA adopts the GST fold
with an N-terminal thioredoxin-fold domain and a
C-terminal alpha helical domain, but it does not bind
glutathione (GSH) and lacks GST activity. SspA is highly
conserved among gram-negative bacteria. Related proteins
found in Neisseria (called RegF), Francisella and Vibrio
regulate the expression of virulence factors necessary
for pathogenesis.
Length = 108
Score = 132 bits (333), Expect = 3e-36
Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 60 PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKY 119
P+ RAR+RLM+ E++ + L + N R++ K ++AR+E+R+ L LAP+F + Y
Sbjct: 1 PVSRARSRLMMHRIEQDWYPLLDTILNGRDE---KEAEKARKELRESLTALAPVFAASPY 57
Query: 120 MLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
L +EFS++D +APLLWRL GI L K A + Y ER+F+R S+ SL
Sbjct: 58 FLSEEFSLVDCYLAPLLWRLPALGIELPKQAKAIKDYMERVFARDSFQASL 108
>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed.
Length = 198
Score = 123 bits (310), Expect = 6e-32
Identities = 70/195 (35%), Positives = 90/195 (46%), Gaps = 56/195 (28%)
Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNAKDG 445
AK V ELR KT A +M+CKKAL EANG + KA E LR K KK + R A +G
Sbjct: 4 TAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKK----AGRVAAEG 59
Query: 446 VIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP------------- 490
++ YI ++G LVE+NCETDFVA+ EF + +K IA I P
Sbjct: 60 LVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVI 119
Query: 491 -----INLDQLNNLK----------------------------IKNNLLTVDEKCKELIS 517
I Q N IK+ TV++ KE I+
Sbjct: 120 EKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFIKDPSKTVEDLIKEAIA 179
Query: 518 RIGENIKIRRFKLFK 532
+IGENI +RRF F+
Sbjct: 180 KIGENIVVRRFARFE 194
Score = 59.1 bits (144), Expect = 9e-10
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 533 TNNNLI-SYLHDN-KIGVIVEYN--------GDN-ESAVKDVAMHIAAMKPIALSSDQIP 581
L+ SY+H +IGV+VE N + + KD+AM IAA P +S + +P
Sbjct: 56 AAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVP 115
Query: 582 KKIIEKEYSLAVLKAQQLGE 601
++IEKE + +AQ L E
Sbjct: 116 AEVIEKE--KEIYRAQALNE 133
>gnl|CDD|223698 COG0625, Gst, Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones].
Length = 211
Score = 122 bits (308), Expect = 1e-31
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 2 DFEIRDIDLF--NKPDNIFRMNPYGQVPILVERDL-ILYESNIINEYIDERFPYPQLMSS 58
+EI +DL KP + +NP G+VP LV+ D +L ES I EY+ ER+P P L+ +
Sbjct: 25 PYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPA 84
Query: 59 DPLMR-ARARLMLLNFEKEIFIHLYMLENERNKTSIKGY------KRAREEIRDRLITLA 111
DPL R ARA L+ F +H + + R + + AR EIR L L
Sbjct: 85 DPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLE 144
Query: 112 PLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
L Y+ GD F++ D+ +APLLWRL G L+ L + ER+ +RP++ ++
Sbjct: 145 ALLADGPYLAGDRFTIADIALAPLLWRLALLGEELADYP-ALKAWYERVLARPAFR-AVQ 202
Query: 172 PAEKIMQA 179
A +
Sbjct: 203 EALEGEAL 210
>gnl|CDD|214362 CHL00098, tsf, elongation factor Ts.
Length = 200
Score = 111 bits (279), Expect = 1e-27
Identities = 73/191 (38%), Positives = 91/191 (47%), Gaps = 49/191 (25%)
Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAI 449
A+ V ELR KT A +M+CKKAL EANG KA E LR K S R +G+I
Sbjct: 1 SAELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIES 60
Query: 450 YI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLI----------TENTP------- 490
YI K+G LVEINCETDFVA+ EF K +K IA I E+ P
Sbjct: 61 YIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLE 120
Query: 491 ----INLDQLNN-----------------LK---------IKNNLLTVDEKCKELISRIG 520
D L N LK I++ +TV+E K+ I+++G
Sbjct: 121 KKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFIRDQSITVEELIKQNIAKLG 180
Query: 521 ENIKIRRFKLF 531
ENI+IRRF F
Sbjct: 181 ENIQIRRFARF 191
Score = 38.1 bits (89), Expect = 0.010
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 532 KTNNNLI-SYLH-DNKIGVIVEYNGDNESA---------VKDVAMHIAAMKPIA-LSSDQ 579
T LI SY+H K+GV+VE N + + K++AM IAA + +S +
Sbjct: 52 ITTEGLIESYIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLED 111
Query: 580 IPKKIIEKE 588
IP++II E
Sbjct: 112 IPEEIINLE 120
>gnl|CDD|239357 cd03059, GST_N_SspA, GST_N family, Stringent starvation protein A
(SspA) subfamily; SspA is a RNA polymerase
(RNAP)-associated protein required for the lytic
development of phage P1 and for stationary
phase-induced acid tolerance of E. coli. It is
implicated in survival during nutrient starvation. SspA
adopts the GST fold with an N-terminal TRX-fold domain
and a C-terminal alpha helical domain, but it does not
bind glutathione (GSH) and lacks GST activity. SspA is
highly conserved among gram-negative bacteria. Related
proteins found in Neisseria (called RegF), Francisella
and Vibrio regulate the expression of virulence factors
necessary for pathogenesis.
Length = 73
Score = 90.5 bits (225), Expect = 5e-22
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50
+ EI D+D N P+++ +NPYG VP LV+RDL+LYES II EY+DERF
Sbjct: 24 VSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73
>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic
domain; present in such enzymes like N-acetylglutamate
kinase (NAGK), carbamate kinase (CK), aspartokinase
(AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK).
The AAK superfamily includes kinases that phosphorylate
a variety of amino acid substrates. These kinases
catalyze the formation of phosphoric anhydrides,
generally with a carboxylate, and use ATP as the source
of the phosphoryl group; are involved in amino acid
biosynthesis. Some of these kinases control the process
via allosteric feed-back inhibition.
Length = 248
Score = 94.8 bits (236), Expect = 1e-21
Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 30/235 (12%)
Query: 616 IKNIISEISEIVSCGIELAIVIGGGN-----ICR-GISNKIQNIDRST---ADYMGMLAT 666
++N+ + ++ S G + +V G G + G R T D + +
Sbjct: 15 LRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGE 74
Query: 667 IINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI---------KYLEEGKVVIFA 717
+++L + L + GI + + + + I LE G + I +
Sbjct: 75 GMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILS 134
Query: 718 GGIG--------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKI 769
G G +D+TAAL AA +KA+ ++ T VDG+Y +DP K A + ++
Sbjct: 135 GFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSEL 194
Query: 770 TFDEV---ISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
T++E ++ A +P+R+ + GAL + GTL+
Sbjct: 195 TYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248
>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family. This family
includes kinases that phosphorylate a variety of amino
acid substrates, as well as uridylate kinase and
carbamate kinase. This family includes: Aspartokinase
EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate
5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-,
Carbamate kinase EC:2.7.2.2.
Length = 230
Score = 93.6 bits (233), Expect = 2e-21
Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 27/217 (12%)
Query: 612 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 671
+ IK + EI+++++ GI++ +V GGG + G ++ +
Sbjct: 14 DKDEIKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYGIEAGFVRHTAGATGLVLEAQ 73
Query: 672 ALFDILNKSG---------IISHVMSAISIEKFLESYIPLNAI-KYLEEGKVVIFAGGIG 721
++ ++ ++S + + AI + LE G V + G G
Sbjct: 74 LAAELNRIVVSLGERLGARAVALLLSDGGLPAVRLDLVDTEAIKELLEAGVVPVITGFGG 133
Query: 722 N---------PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD 772
++DT AAL A + A+ ++ T VDG+Y +DP K A + ++++D
Sbjct: 134 ENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKNPDAKLIPELSYD 193
Query: 773 EV--------ISKKLEIMDSTAFSFCRDQKLPIRVFS 801
E ++ +++ A R +P+ + +
Sbjct: 194 EAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230
>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf,
the mostly archaeal uridine monophosphate kinase
(uridylate kinase) enzymes that catalyze UMP
phosphorylation and play a key role in pyrimidine
nucleotide biosynthesis; regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinase of
Pyrococcus furiosus (Pf) is known to function as a
homohexamer, with GTP and UTP being allosteric
effectors. Like other related enzymes (carbamate kinase,
aspartokinase, and N-acetylglutamate kinase) the E. coli
and most bacterial UMPKs have a conserved, N-terminal,
lysine residue proposed to function in the catalysis of
the phosphoryl group transfer, whereas most archaeal
UMPKs (this CD) appear to lack this residue and the
Pyrococcus furiosus structure has an additional Mg ion
bound to the ATP molecule which is proposed to function
as the catalysis instead. Members of this CD belong to
the Amino Acid Kinase Superfamily (AAK).
Length = 221
Score = 79.2 bits (196), Expect = 2e-16
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 32/218 (14%)
Query: 616 IKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRSTADYMGMLATIINSLA 672
N++ +IS+ G ++A+V+GGG + R ++ K+ + D +G++AT +N+
Sbjct: 23 YANVLRKISD----GHKVAVVVGGGRLAREYISVARKL-GASEAFLDEIGIMATRLNARL 77
Query: 673 LFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAA 732
L L + SY A++ + GK+V+ GG P +TD AA
Sbjct: 78 LIAALGDA-----------YPPVPTSYEE--ALEAMFTGKIVV-MGGT-EPGQSTDAVAA 122
Query: 733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE----VISKKL-----EIMD 783
L A + A++++ AT VDG+Y+ DP K A + +++ DE V E D
Sbjct: 123 LLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFD 182
Query: 784 STAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
A + V L+R ++G+ GT++
Sbjct: 183 PLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220
>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative. This family
consists of the archaeal and spirochete proteins most
closely related to bacterial uridylate kinases
(TIGR02075), an enzyme involved in pyrimidine
biosynthesis. Members are likely, but not known, to be
functionally equivalent to their bacterial counterparts.
However, substantial sequence differences suggest that
regulatory mechanisms may be different; the bacterial
form is allosterically regulated by GTP [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 221
Score = 75.0 bits (185), Expect = 4e-15
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 616 IKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRSTADYMGMLATIINSLA 672
NI+ ++S+ ++ +V+GGG R G++ ++ + D +G+ AT +N++
Sbjct: 22 FANILRKLSD----EHKVGVVVGGGKTARRYIGVAREL-GASETFLDEIGIDATRLNAML 76
Query: 673 LFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAA 732
L L + A++ + GK+V+ GG +P TTD AA
Sbjct: 77 LIAALGDDAYPKVPEN------------FEEALEAMSLGKIVV-MGGT-HPGHTTDAVAA 122
Query: 733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE----VISKKL-----EIMD 783
L A KA++++ AT VDG+Y+ DP K A + K+T +E V S + E++D
Sbjct: 123 LLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVD 182
Query: 784 STAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
A K+ V + L++V++G++ GT++
Sbjct: 183 PLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220
>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS.
Length = 134
Score = 69.0 bits (170), Expect = 8e-14
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 442 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIA 482
A +G++A+YI G LVE+NCETDFVAKN +F + +K IA
Sbjct: 1 AAEGLVAVYIDGNKGVLVEVNCETDFVAKNEKFQELAKDIA 41
Score = 62.5 bits (153), Expect = 1e-11
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 539 SYLHDNKIGVIVEYN------GDNES---AVKDVAMHIAAMKPIALSSDQIPKKIIEKEY 589
Y+ NK GV+VE N NE KD+AMHIAAM P LS D +P +++EKE
Sbjct: 8 VYIDGNK-GVLVEVNCETDFVAKNEKFQELAKDIAMHIAAMNPQYLSRDDVPAEVLEKER 66
Query: 590 SLAVLKAQQLG 600
+ +A++ G
Sbjct: 67 EILKAQAKEEG 77
>gnl|CDD|185068 PRK15113, PRK15113, glutathione S-transferase; Provisional.
Length = 214
Score = 64.6 bits (158), Expect = 1e-11
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 44/189 (23%)
Query: 2 DFEIRDIDLFNKPDNIFRMNPYGQ------VPILVERDLILYESNIINEYIDERFP---Y 52
FE++ +DL + ++ Y VP L D L ES+ I EY++ERF +
Sbjct: 32 PFELKTVDL-DAGEH--LQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAW 88
Query: 53 PQLMSSDPLMRARAR---------LMLLNFEKEIFIHLYMLENERNKTSIKGYKRAR--- 100
++ +D RARAR LM L ER + +
Sbjct: 89 ERIYPADLQARARARQIQAWLRSDLM-------------PLREERPTDVVFAGAKKAPLS 135
Query: 101 EEIR---DRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKY 156
E + ++L +A L + L E+ + D +A +L RL +G + L Y
Sbjct: 136 EAGKAAAEKLFAVAERLLAPGQPNLFGEWCIADTDLALMLNRLVLHGDEVP---ERLADY 192
Query: 157 AERIFSRPS 165
A + R S
Sbjct: 193 ATFQWQRAS 201
>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase
Superfamily (AAK), AK-DapG-like; this CD includes the
N-terminal catalytic aspartokinase (AK) domain of the
diaminopimelate-sensitive aspartokinase isoenzyme AKI
(DapG), a monofunctional enzymes found in Bacilli
(Bacillus subtilis 168), Clostridia, and Actinobacteria
bacterial species, as well as, the catalytic AK domain
of the lysine-sensitive aspartokinase isoenzyme AKII of
Bacillus subtilis 168, the lysine plus
threonine-sensitive aspartokinase of Corynebacterium
glutamicum, and related isoenzymes. In Bacillus
subtilis, the regulation of the diaminopimelate-lysine
biosynthetic pathway involves dual control by
diaminopimelate and lysine, effected through separate
diaminopimelate- and lysine-sensitive aspartokinase
isoenzymes. The role of the AKI isoenzyme is most likely
to provide a constant level of aspartyl-beta-phosphate
for the biosynthesis of diaminopimelate for
peptidoglycan synthesis and dipicolinate during
sporulation. The B. subtilis 168 AKII is induced by
methionine, and repressed and inhibited by lysine. In
Corynebacterium glutamicum and other various
Gram-positive bacteria, the DAP-lysine pathway is
feedback regulated by the concerted action of lysine and
threonine. Also included in this CD are the
aspartokinases of the extreme thermophile, Thermus
thermophilus HB27, the Gram-negative obligate
methylotroph, Methylophilus methylotrophus AS1, and
those single aspartokinase isoenzyme types found in
Pseudomonas, C. glutamicum, and Amycolatopsis
lactamdurans. The B. subtilis AKI is tetrameric
consisting of two alpha and two beta subunits; the alpha
(43 kD) and beta (17 kD) subunit formed by two in-phase
overlapping genes. The alpha subunit contains the AK
catalytic domain and two ACT domains. The beta subunit
contains two ACT domains. The B. subtilis 168 AKII
aspartokinase is also described as tetrameric consisting
of two alpha and two beta subunits. Some archeal
aspartokinases in this group lack recognizable ACT
domains.
Length = 239
Score = 65.2 bits (160), Expect = 1e-11
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 705 IKYLEEGKVVIFAG--GI-GNPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 755
++ LEEG VV+ AG G+ + TT DTTA AA +KA+ T VDG+Y +
Sbjct: 120 LEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTA 179
Query: 756 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
DP A I++DE++ S +++ + + +P+RV S
Sbjct: 180 DPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFS-------- 231
Query: 813 EGKNEGTLV 821
+N GTL+
Sbjct: 232 --ENPGTLI 238
>gnl|CDD|205595 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain.
Length = 75
Score = 58.7 bits (143), Expect = 6e-11
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 2 DFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53
+E ++ +KP + +NP G+VP+LV+ +L +S I EY++E FP P
Sbjct: 23 PYEEVEVPPGDKPPELLALNPLGKVPVLVDDGEVLTDSLAIIEYLEELFPGP 74
>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase
Superfamily (AAK), AKii; this CD includes the N-terminal
catalytic aspartokinase (AK) domain of the
lysine-sensitive aspartokinase isoenzyme AKII of
Bacillus subtilis 168, and the lysine plus
threonine-sensitive aspartokinase of Corynebacterium
glutamicum, and related sequences. In B. subtilis 168,
the regulation of the diaminopimelate (Dap)-lysine
biosynthetic pathway involves dual control by Dap and
lysine, effected through separate Dap- and
lysine-sensitive aspartokinase isoenzymes. The B.
subtilis 168 AKII is induced by methionine, and
repressed and inhibited by lysine. Although
Corynebacterium glutamicum is known to contain a single
aspartokinase isoenzyme type, both the succinylase and
dehydrogenase variant pathways of DAP-lysine synthesis
operate simultaneously in this organism. In this
organism and other various Gram-positive bacteria, the
DAP-lysine pathway is feedback regulated by the
concerted action of lysine and theronine. Also included
in this CD are the aspartokinases of the extreme
thermophile, Thermus thermophilus HB27, the
Gram-negative obligate methylotroph, Methylophilus
methylotrophus AS1, and those single aspartokinases
found in Pseudomons, C. glutamicum, and Amycolatopsis
lactamdurans. B. subtilis 168 AKII, and the C.
glutamicum, Streptomyces clavuligerus and A.
lactamdurans aspartokinases are described as tetramers
consisting of two alpha and two beta subunits; the alpha
(44 kD) and beta (18 kD) subunits formed by two in-phase
overlapping polypeptides.
Length = 239
Score = 61.4 bits (150), Expect = 3e-10
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 705 IKYLEEGKVVIFAG--GI---GNPFFTT------DTTAALRAAEIKAEIILKATKVDGIY 753
+ LEEG VVI AG GI G+ TT DT+A AA + A+ T VDG+Y
Sbjct: 120 RELLEEGDVVIVAGFQGINEDGD--ITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVY 177
Query: 754 NSDPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR 810
+DP A +I++DE++ S +++ + + +P+RV S
Sbjct: 178 TADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFS------ 231
Query: 811 VIEGKNEGTLV 821
+ GTL+
Sbjct: 232 ----EEPGTLI 238
>gnl|CDD|233333 TIGR01262, maiA, maleylacetoacetate isomerase. Maleylacetoacetate
isomerase is an enzyme of tyrosine and phenylalanine
catabolism. It requires glutathione and belongs by
homology to the zeta family of glutathione
S-transferases. The enzyme (EC 5.2.1.2) is described as
active also on maleylpyruvate, and the example from a
Ralstonia sp. catabolic plasmid is described as a
maleylpyruvate isomerase involved in gentisate
catabolism [Energy metabolism, Amino acids and amines].
Length = 210
Score = 59.3 bits (144), Expect = 9e-10
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 33/156 (21%)
Query: 19 RMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARAR----------- 67
+NP G VP L +L +S I EY++E +P P L+ +DP+ RAR R
Sbjct: 45 ALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPADPIKRARVRALALLIACDIH 104
Query: 68 ----LMLLNFEKEIFIHLYMLENERN---KTSI-KGYKRAREEIRDRLITLAPLFLKNKY 119
L +L + +E E RN + I KG+ ++ +
Sbjct: 105 PLNNLRVLQYLREKLGV---EEEARNRWYQHWISKGFAALEALLQPH---------AGAF 152
Query: 120 MLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK 155
+GD ++ D+ + P ++ + +G++L + P ++
Sbjct: 153 CVGDTPTLADLCLVPQVYNAERFGVDL--TPYPTLR 186
>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal).
This model describes the ribosomal protein of the
cytosol and of Archaea, homologous to S2 of bacteria. It
is designated typically as Sa in eukaryotes and Sa or S2
in the archaea. TIGR01011 describes the related protein
of organelles and bacteria [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 196
Score = 58.6 bits (142), Expect = 1e-09
Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 51/213 (23%)
Query: 168 ESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNK-IHIINLEKTLYMYEKAIRYIYQ 226
E L P + + AGVH G Q + M +I+ R+ +++++L KT A +++ +
Sbjct: 1 EYLVPVDMYLAAGVHIGTQNK--TFDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVR 58
Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
+L V + + + A G I R+ G TN K
Sbjct: 59 --IEPQDILVVSARIYGQKPVLKFAKYTGARAIAGRFTPGTFTN--------PMQKS--- 105
Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
+R+ P+ + + D AV EA ++
Sbjct: 106 ------------------FRE-----------------PEVVVVTDPRADHQAVKEASEV 130
Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
IPI+ + DT++ ++ VIP N+ +S+AL
Sbjct: 131 GIPIVALCDTDNPLRYVDLVIPTNNKGRRSLAL 163
>gnl|CDD|238319 cd00570, GST_N_family, Glutathione S-transferase (GST) family,
N-terminal domain; a large, diverse group of cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
In addition, GSTs also show GSH peroxidase activity and
are involved in the synthesis of prostaglandins and
leukotrienes. This family, also referred to as soluble
GSTs, is the largest family of GSH transferases and is
only distantly related to the mitochondrial GSTs (GSTK
subfamily, a member of the DsbA family). Soluble GSTs
bear no structural similarity to microsomal GSTs (MAPEG
family) and display additional activities unique to
their group, such as catalyzing thiolysis, reduction
and isomerization of certain compounds. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. Based on sequence
similarity, different classes of GSTs have been
identified, which display varying tissue distribution,
substrate specificities and additional specific
activities. In humans, GSTs display polymorphisms which
may influence individual susceptibility to diseases
such as cancer, arthritis, allergy and sclerosis. Some
GST family members with non-GST functions include
glutaredoxin 2, the CLIC subfamily of anion channels,
prion protein Ure2p, crystallins, metaxin 2 and
stringent starvation protein A.
Length = 71
Score = 54.5 bits (132), Expect = 2e-09
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 2 DFEIRDIDLFNKPDNIFR-MNPYGQVPILVERDLILYESNIINEYID 47
+E+ +DL F +NP G+VP+L + L+L ES I EY+
Sbjct: 25 PYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71
>gnl|CDD|222111 pfam13410, GST_C_2, Glutathione S-transferase, C-terminal domain.
This domain is closely related to pfam00043.
Length = 69
Score = 53.5 bits (129), Expect = 4e-09
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 96 YKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD--YYGINLSKSASPL 153
+RA ++ L L Y+LGD S+ D+ +AP L RLD G++L L
Sbjct: 4 LERALAQLERALDALEERLADGPYLLGDRPSLADIALAPALARLDFRGPGLDLRAGYPNL 63
Query: 154 IKYAER 159
+ ER
Sbjct: 64 RAWLER 69
>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase. Aspartate kinase
catalyzes a first step in the biosynthesis from Asp of
Lys (and its precursor diaminopimelate), Met, and Thr.
In E. coli, a distinct isozyme is inhibited by each of
the three amino acid products. The Met-sensitive (I) and
Thr-sensitive (II) forms are bifunctional enzymes fused
to homoserine dehydrogenases and form homotetramers,
while the Lys-sensitive form (III) is a monofunctional
homodimer.The Lys-sensitive enzyme of Bacillus subtilis
resembles the E. coli form but is an alpha 2/beta 2
heterotetramer, where the beta subunit is translated
from an in-phase alternative initiator at Met-246. This
may be a feature of a number of closely related forms,
including a paralog from B. subtilis [Amino acid
biosynthesis, Aspartate family].
Length = 441
Score = 56.6 bits (137), Expect = 4e-08
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 706 KYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSD 756
LEEG + + AG G TT D TAAL AA +KA+ T VDGIY +D
Sbjct: 163 PLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTD 222
Query: 757 PNKCLSAIIYKKITFDE---VISKKLEIMDSTAFSFCRDQKLPIRVFS 801
P A +I+++E + S +++ K+PI V S
Sbjct: 223 PRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKS 270
>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class.
This model describes a subclass of aspartate kinases.
These are mostly Lys-sensitive and not fused to
homoserine dehydrogenase, unlike some Thr-sensitive and
Met-sensitive forms. Homoserine dehydrogenase is part of
Thr and Met but not Lys biosynthetic pathways. Aspartate
kinase catalyzes a first step in the biosynthesis from
Asp of Lys (and its precursor diaminopimelate), Met, and
Thr. In E. coli, a distinct isozyme is inhibited by each
of the three amino acid products. The Met-sensitive (I)
and Thr-sensitive (II) forms are bifunctional enzymes
fused to homoserine dehydrogenases and form
homotetramers, while the Lys-sensitive form (III) is a
monofunctional homodimer. The Lys-sensitive enzyme of
Bacillus subtilis resembles the E. coli form but is an
alpha 2/beta 2 heterotetramer, where the beta subunit is
translated from an in-phase alternative initiator at
Met-246. The protein slr0657 from Synechocystis PCC6803
is extended by a duplication of the C-terminal region
corresponding to the beta chain. Incorporation of a
second copy of the C-terminal domain may be quite common
in this subgroup of aspartokinases [Amino acid
biosynthesis, Aspartate family].
Length = 401
Score = 55.5 bits (134), Expect = 8e-08
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 708 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 758
LEEG +V+ AG G + TT D TAAL AA +KA+ + T V G+Y +DP
Sbjct: 126 LEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPR 185
Query: 759 KCLSAIIYKKITFDE---VISKKLEIMDSTAFSFCRDQKLPIRVFS 801
+A KI+++E + + +++ +PI V S
Sbjct: 186 VVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRS 231
>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional.
Length = 204
Score = 53.3 bits (129), Expect = 8e-08
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 325 PDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
PD + + D AV EAI++ IP++ + DT++ ++ VIP N+ K++AL
Sbjct: 115 PDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALAL 169
Score = 31.4 bits (72), Expect = 1.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 167 MESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNK-IHIINLEKT 213
E L P E+ + AGVH G Q + M +I+ R ++++++ KT
Sbjct: 6 EELLVPLEEYLAAGVHIGTQQK--TKDMERFIYRVRPDGLYVLDVRKT 51
>gnl|CDD|239351 cd03053, GST_N_Phi, GST_N family, Class Phi subfamily; composed
of plant-specific class Phi GSTs and related fungal and
bacterial proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. The class Phi GST subfamily
has experience extensive gene duplication. The
Arabidopsis and Oryza genomes contain 13 and 16 Phi
GSTs, respectively. They are primarily responsible for
herbicide detoxification together with class Tau GSTs,
showing class specificity in substrate preference. Phi
enzymes are highly reactive toward chloroacetanilide
and thiocarbamate herbicides. Some Phi GSTs have other
functions including transport of flavonoid pigments to
the vacuole, shoot regeneration and GSH peroxidase
activity.
Length = 76
Score = 49.6 bits (119), Expect = 1e-07
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 2 DFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 49
D+E+ +DL +K NP+GQ+P L + DL L+ES I Y+ E+
Sbjct: 26 DYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76
>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and
metabolism].
Length = 447
Score = 54.6 bits (132), Expect = 1e-07
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 30/161 (18%)
Query: 705 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 755
++ LEEGKV + AG G + TT D +AA AA + A+ + T VDG+Y +
Sbjct: 168 LRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTA 227
Query: 756 DPNKCLSAIIYKKITFDEVI------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK 809
DP A + +I+++E + +K L A +P+R+ K
Sbjct: 228 DPRIVPDARLLPEISYEEALELAYLGAKVLHP---RAVEPAMRSGIPLRI---------K 275
Query: 810 RVIEGKNEGTLVYEIYIM---IISDIKKNTKQKMLNTIKIL 847
GTL+ ++ I + ++
Sbjct: 276 NTFNPDAPGTLITAETESDEPVVKGIALDDNVALITVSGPG 316
>gnl|CDD|239353 cd03055, GST_N_Omega, GST_N family, Class Omega subfamily; GSTs
are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Omega GSTs show little or no
GSH-conjugating activity towards standard GST
substrates. Instead, they catalyze the GSH dependent
reduction of protein disulfides, dehydroascorbate and
monomethylarsonate, activities which are more
characteristic of glutaredoxins. They contain a
conserved cysteine equivalent to the first cysteine in
the CXXC motif of glutaredoxins, which is a redox
active residue capable of reducing GSH mixed disulfides
in a monothiol mechanism. Polymorphisms of the class
Omega GST genes may be associated with the development
of some types of cancer and the age-at-onset of both
Alzheimer's and Parkinson's diseases.
Length = 89
Score = 48.9 bits (117), Expect = 3e-07
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 4 EIRDIDLFNKPDNIFRMNPYGQVPIL-VERDLILYESNIINEYID 47
E+ +I+L +KPD NP G+VP L ++ ++YES II EY+D
Sbjct: 45 EVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89
>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK),
Aspartokinase (AK); this CD includes the N-terminal
catalytic domain of aspartokinase
(4-L-aspartate-4-phosphotransferase;). AK is the first
enzyme in the biosynthetic pathway of the aspartate
family of amino acids (lysine, threonine, methionine,
and isoleucine) and the bacterial cell wall component,
meso-diaminopimelate. It also catalyzes the conversion
of aspartate and ATP to aspartylphosphate and ADP. One
mechanism for the regulation of this pathway is by the
production of several isoenzymes of aspartokinase with
different repressors and allosteric inhibitors. Pairs of
ACT domains are proposed to specifically bind amino
acids leading to allosteric regulation of the enzyme. In
Escherichia coli, three different aspartokinase
isoenzymes are regulated specifically by lysine,
methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII
(MetL) are bifunctional enzymes that consist of an
N-terminal AK and a C-terminal homoserine dehydrogenase
(HSDH). ThrA and MetL are involved in threonine and
methionine biosynthesis, respectively. The third
isoenzyme, AKIII (LysC), is monofunctional and is
involved in lysine synthesis. The three Bacillus
subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII
(YclM), are feedback-inhibited by meso-diaminopimelate,
lysine, and lysine plus threonine, respectively. The E.
coli lysine-sensitive AK is described as a homodimer,
whereas, the B. subtilis lysine-sensitive AK is
described as a heterodimeric complex of alpha- and beta-
subunits that are formed from two in-frame overlapping
genes. A single AK enzyme type has been described in
Pseudomonas, Amycolatopsis, and Corynebacterium. The
fungal aspartate pathway is regulated at the AK step,
with L-Thr being an allosteric inhibitor of the
Saccharomyces cerevisiae AK (Hom3). At least two
distinct AK isoenzymes can occur in higher plants, one
is a monofunctional lysine-sensitive isoenzyme, which is
involved in the overall regulation of the pathway and
can be synergistically inhibited by
S-adenosylmethionine. The other isoenzyme is a
bifunctional, threonine-sensitive AK-HSDH protein. Also
included in this CD is the catalytic domain of the
Methylomicrobium alcaliphilum ectoine AK, the first
enzyme of the ectoine biosynthetic pathway, found in
this bacterium, and several other
halophilic/halotolerant bacteria.
Length = 227
Score = 51.3 bits (124), Expect = 5e-07
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 709 EEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 759
E GKV + G IG + TT D +AA AA + A+ + T VDGIY +DP
Sbjct: 111 EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170
Query: 760 CLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFS 801
A + +I++DE + +++ A R +PIRV +
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKN 215
>gnl|CDD|239356 cd03058, GST_N_Tau, GST_N family, Class Tau subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. The plant-specific class Tau GST subfamily has
undergone extensive gene duplication. The Arabidopsis
and Oryza genomes contain 28 and 40 Tau GSTs,
respectively. They are primarily responsible for
herbicide detoxification together with class Phi GSTs,
showing class specificity in substrate preference. Tau
enzymes are highly efficient in detoxifying
diphenylether and aryloxyphenoxypropionate herbicides.
In addition, Tau GSTs play important roles in
intracellular signalling, biosynthesis of anthocyanin,
responses to soil stresses and responses to auxin and
cytokinin hormones.
Length = 74
Score = 47.7 bits (114), Expect = 6e-07
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 2 DFEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERF 50
+E + DL NK + + NP + ++P+L+ + ES II EYIDE +
Sbjct: 25 PYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74
>gnl|CDD|166458 PLN02817, PLN02817, glutathione dehydrogenase (ascorbate).
Length = 265
Score = 51.5 bits (123), Expect = 6e-07
Identities = 44/198 (22%), Positives = 96/198 (48%), Gaps = 30/198 (15%)
Query: 3 FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLM 62
++++ +DL NKP+ +++P G+VP++ + + +S++I + ++E++P P L + P
Sbjct: 90 YDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLAT--PPE 147
Query: 63 RARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN-KYML 121
+A + + FI ++K G ++A + D L + +N ++
Sbjct: 148 KASVGSKIFS----TFIGFL-----KSKDPGDGTEQA---LLDELTSFDDYIKENGPFIN 195
Query: 122 GDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKI 176
G++ S D+ + P L+ L+ Y ++ S + Y + IFS S++++ E +
Sbjct: 196 GEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDV 255
Query: 177 MQAGVHFGHQTRFWNPKM 194
+ AG W PK+
Sbjct: 256 I-AG---------WRPKV 263
>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase
Superfamily (AAK), AKi-DapG; this CD includes the
N-terminal catalytic aspartokinase (AK) domain of the
diaminopimelate-sensitive aspartokinase isoenzyme AKI
(DapG), a monofunctional class enzyme found in Bacilli
(Bacillus subtilis 168), Clostridia, and Actinobacteria
bacterial species. In Bacillus subtilis, the regulation
of the diaminopimelate-lysine biosynthetic pathway
involves dual control by diaminopimelate and lysine,
effected through separate diaminopimelate- and
lysine-sensitive aspartokinase isoenzymes. AKI activity
is invariant during the exponential and stationary
phases of growth and is not altered by addition of amino
acids to the growth medium. The role of this isoenzyme
is most likely to provide a constant level of
aspartyl-beta-phosphate for the biosynthesis of
diaminopimelate for peptidoglycan synthesis and
dipicolinate during sporulation. The B. subtilis AKI is
tetrameric consisting of two alpha and two beta
subunits; the alpha (43 kD) and beta (17 kD) subunit
formed by two in-phase overlapping genes. The alpha
subunit contains the AK catalytic domain and two ACT
domains. The beta subunit contains two ACT domains.
Length = 244
Score = 50.8 bits (122), Expect = 8e-07
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 667 IINSLALFDILNKSGIISHVMSA-----ISIEKFLESYI----PLNAIKYLEEGKVVIFA 717
II+++ L L G+ + ++ ++ + + + I P + L+EG VV+ A
Sbjct: 78 IISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVA 137
Query: 718 GGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKK 768
G G + TT DTTAA A + AE + T VDGI +DP +A I
Sbjct: 138 GFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDV 197
Query: 769 ITFDEV 774
++++EV
Sbjct: 198 VSYNEV 203
>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed.
Length = 403
Score = 51.8 bits (125), Expect = 1e-06
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 18/126 (14%)
Query: 667 IINSLALFDILNKSGIISHVMSA-----ISIEKFLESYI----PLNAIKYLEEGKVVIFA 717
II+S+ ++LN++GI + ++ I+ + F + I P ++ LEEG VV+ A
Sbjct: 80 IISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVA 139
Query: 718 GGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKK 768
G G N TT DTTAA +KAE + T VDGI +DP A +
Sbjct: 140 GFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDV 199
Query: 769 ITFDEV 774
++++EV
Sbjct: 200 VSYNEV 205
>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 49.3 bits (119), Expect = 6e-06
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 38/136 (27%)
Query: 706 KYLEEGKVVIFAG--GI---GNPFFTT------DTTAALRAAEIKA---EIILKATKVDG 751
+ L+EG VV+ AG G+ G TT DTTA AA +KA EI T VDG
Sbjct: 123 EALDEGDVVVVAGFQGVDEDGE--ITTLGRGGSDTTAVALAAALKADECEIY---TDVDG 177
Query: 752 IYNSDPNKCLSAIIYKKITFDEVI------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKS 805
+Y +DP A KI+++E++ +K L + + + +P+RV S
Sbjct: 178 VYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHP---RSVEYAKKYNVPLRVRSSFSD 234
Query: 806 GALKRVIEGKNEGTLV 821
N GTL+
Sbjct: 235 ----------NPGTLI 240
>gnl|CDD|239344 cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae
GTT1-like subfamily; composed of predominantly
uncharacterized proteins with similarity to the S.
cerevisiae GST protein, GTT1, and the
Schizosaccharomyces pombe GST-III. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GTT1, a
homodimer, exhibits GST activity with standard
substrates and associates with the endoplasmic
reticulum. Its expression is induced after diauxic
shift and remains high throughout the stationary phase.
S. pombe GST-III is implicated in the detoxification of
various metals.
Length = 76
Score = 44.4 bits (106), Expect = 7e-06
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 2 DFEIRDIDL---FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP 51
+E+ D P +NP G+VP+LV+ DL+L ES I Y+ E++
Sbjct: 24 PYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76
>gnl|CDD|222110 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain.
This family is closely related to pfam02798.
Length = 68
Score = 44.1 bits (105), Expect = 9e-06
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 2 DFEIRDIDL--FNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDER 49
+EI ++ L ++KP + +NP G+VP+LV + ++ +S I EY++E
Sbjct: 18 PYEIEEVPLDPWDKPPELLALNPLGKVPVLVLDDGEVITDSLAILEYLEEL 68
>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase
Superfamily (AAK), AKiii-LysC-EC: this CD includes the
N-terminal catalytic aspartokinase (AK) domain of the
lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is
a monofunctional class enzyme (LysC) found in some
bacteria such as E. coli. Aspartokinase is the first
enzyme in the aspartate metabolic pathway and catalyzes
the conversion of aspartate and ATP to aspartylphosphate
and ADP. In E. coli, LysC is reported to be a homodimer
of 50 kD subunits.
Length = 292
Score = 48.1 bits (115), Expect = 1e-05
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 705 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 755
+K L G VV+ G IG TT D +AAL A + AE + T V GIY +
Sbjct: 172 LKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTT 231
Query: 756 DPNKCLSAIIYKKITFDE 773
DP C +A K+I+F E
Sbjct: 232 DPRICPAARAIKEISFAE 249
>gnl|CDD|215674 pfam00043, GST_C, Glutathione S-transferase, C-terminal domain.
GST conjugates reduced glutathione to a variety of
targets including S-crystallin from squid, the
eukaryotic elongation factor 1-gamma, the HSP26 family
of stress-related proteins and auxin-regulated proteins
in plants. Stringent starvation proteins in E. coli are
also included in the alignment but are not known to have
GST activity. The glutathione molecule binds in a cleft
between N and C-terminal domains. The catalytically
important residues are proposed to reside in the
N-terminal domain. In plants, GSTs are encoded by a
large gene family (48 GST genes in Arabidopsis) and can
be divided into the phi, tau, theta, zeta, and lambda
classes.
Length = 92
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 78 FIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLW 137
+ L E + A E++ L L + Y++GD+ ++ D+ +AP L
Sbjct: 8 YALLPYGPPEEKDEPE--VEEALEKLLKVLEALEEVLKGKTYLVGDKLTLADIALAPALD 65
Query: 138 RLDYYGINLSKSASPLIKYAERIFSRP 164
L + + L + +R+ +RP
Sbjct: 66 WLYMLEPDPLEKFPNLKAWRKRVAARP 92
>gnl|CDD|182533 PRK10542, PRK10542, glutathionine S-transferase; Provisional.
Length = 201
Score = 46.2 bits (110), Expect = 2e-05
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 22/188 (11%)
Query: 1 MDFEIRDIDLFNKP----DNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQL 55
+DF + +DL K D+ +NP GQVP L+ D +L E I +Y+ + P QL
Sbjct: 23 LDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQL 82
Query: 56 MSSDPLMRARARLMLLNF-EKEI---FIHLYMLENERNKTSIKGYK-RAREEIRDRLITL 110
++ + + LN+ E+ F L+ R T + YK R ++ + +
Sbjct: 83 LAPVGSLSRYHTIEWLNYIATELHKGFTPLF-----RPDTP-EEYKPTVRAQLEKKFQYV 136
Query: 111 APLFLKNKYMLGDEFSMLDVVIAPLL-WRLDYYGINLSKSASPLIK-YAERIFSRPSYME 168
+++ G F++ D + +L W Y + L+ I Y +R+ RP+
Sbjct: 137 DEALADEQWICGQRFTIADAYLFTVLRWA---YAVKLNLEGLEHIAAYMQRVAERPAVAA 193
Query: 169 SLTPAEKI 176
+L AE +
Sbjct: 194 ALK-AEGL 200
>gnl|CDD|217234 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain.
Function: conjugation of reduced glutathione to a
variety of targets. Also included in the alignment, but
are not GSTs: * S-crystallins from squid. Similarity to
GST previously noted. * Eukaryotic elongation factors
1-gamma. Not known to have GST activity; similarity not
previously recognised. * HSP26 family of stress-related
proteins. including auxin-regulated proteins in plants
and stringent starvation proteins in E. coli. Not known
to have GST activity. Similarity not previously
recognised. The glutathione molecule binds in a cleft
between N and C-terminal domains - the catalytically
important residues are proposed to reside in the
N-terminal domain.
Length = 74
Score = 42.7 bits (101), Expect = 3e-05
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 2 DFEIRDIDL--FNKPDNIFRMNPY-GQVPILVERDLILYESNIINEYIDE 48
++E +D +K ++NP GQVP L + L ES I Y+
Sbjct: 25 EYEDVRVDFSGEHKSPEWLKLNPLMGQVPALEDGGKKLTESLAIARYLAR 74
>gnl|CDD|198286 cd00299, GST_C_family, C-terminal, alpha helical domain of the
Glutathione S-transferase family. Glutathione
S-transferase (GST) family, C-terminal alpha helical
domain; a large, diverse group of cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
In addition, GSTs also show GSH peroxidase activity and
are involved in the synthesis of prostaglandins and
leukotrienes. This family, also referred to as soluble
GSTs, is the largest family of GSH transferases and is
only distantly related to the mitochondrial GSTs (GSTK).
Soluble GSTs bear no structural similarity to microsomal
GSTs (MAPEG family) and display additional activities
unique to their group, such as catalyzing thiolysis,
reduction and isomerization of certain compounds. The
GST fold contains an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain, with an active
site located in a cleft between the two domains. GSH
binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Based on sequence similarity, different classes of GSTs
have been identified, which display varying tissue
distribution, substrate specificities and additional
specific activities. In humans, GSTs display
polymorphisms which may influence individual
susceptibility to diseases such as cancer, arthritis,
allergy and sclerosis. Some GST family members with
non-GST functions include glutaredoxin 2, the CLIC
subfamily of anion channels, prion protein Ure2p,
crystallins, metaxins, stringent starvation protein A,
and aminoacyl-tRNA synthetases.
Length = 100
Score = 42.9 bits (101), Expect = 4e-05
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 62 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYML 121
+RA + LY LE + AREE+ L L L Y+
Sbjct: 1 VRALEDWADATLAPPLVRLLY-LEKVPLPKDEAAVEAAREELPALLAALEQLLAGRPYLA 59
Query: 122 GDEFSMLDVVIAPLLWRLDYYGINLS-KSASPLIK-YAERI 160
GD+FS+ DV +AP+L RL+ G P +K + +R+
Sbjct: 60 GDQFSLADVALAPVLARLEALGPYYDLLDEYPRLKAWYDRL 100
>gnl|CDD|239354 cd03056, GST_N_4, GST_N family, unknown subfamily 4; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains.
Length = 73
Score = 41.4 bits (98), Expect = 9e-05
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEY 45
+ +E ++D+ + +NP G+VP+L +L ESN I Y
Sbjct: 24 IPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71
>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase
Superfamily (AAK), AK-HSDH-like; this family includes
the N-terminal catalytic domain of aspartokinase (AK) of
the bifunctional enzyme AK- homoserine dehydrogenase
(HSDH). These aspartokinases are found in such bacteria
as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and
in higher plants (Z. mays AK-HSDH). AK and HSDH are the
first and third enzymes in the biosynthetic pathway of
the aspartate family of amino acids. AK catalyzes the
phosphorylation of Asp to P-aspartyl phosphate. HSDH
catalyzes the NADPH-dependent conversion of Asp
3-semialdehyde to homoserine. ThrA and MetL are involved
in threonine and methionine biosynthesis, respectively.
In E. coli, ThrA is subject to allosteric regulation by
the end product L-threonine and the native enzyme is
reported to be tetrameric. As with bacteria, plant AK
and HSDH are feedback inhibited by pathway end products.
Maize AK-HSDH is a Thr-sensitive 180-kD enzyme.
Arabidopsis AK-HSDH is an alanine-activated,
threonine-sensitive enzyme whose ACT domains, located
C-terminal to the AK catalytic domain, were shown to be
involved in allosteric activation. Also included in this
CD is the catalytic domain of the aspartokinase (AK) of
the lysine-sensitive aspartokinase isoenzyme AKIII, a
monofunctional class enzyme (LysC) found in some
bacteria such as E. coli. In E. coli, LysC is reported
to be a homodimer of 50 kD subunits. Also included in
this CD is the catalytic domain of aspartokinase (AK)
of the bifunctional enzyme AK - DAP decarboxylase
(DapDC) found in some bacteria. DapDC, which is the lysA
gene product, catalyzes the decarboxylation of DAP to
lysine.
Length = 293
Score = 44.9 bits (107), Expect = 1e-04
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 709 EEGKVVIFAGGIG-NPFFTT--------DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 759
E GKVV+ G I N T D +AAL AA + AE + T VDG+Y +DP K
Sbjct: 177 EHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRK 236
Query: 760 CLSAIIYKKITFDE 773
A + K++++DE
Sbjct: 237 VPDARLLKELSYDE 250
>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional.
Length = 587
Score = 44.5 bits (106), Expect = 3e-04
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 706 KYLEEGKVVIFAG--GIGNPFF---TT------DTTAALRAAEIKAEIILKATKVDGIYN 754
++L+ GKVV+ AG GI TT DT+A AA + A+ T V G+
Sbjct: 123 RHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLT 182
Query: 755 SDPNKCLSAIIYKKITFDEVISKKLE-------IMDSTAFSFCRDQKLPIRVFS 801
+DP A + +I+ DE+ LE ++ A R+ +P+ V S
Sbjct: 183 TDPRLVPEAQLMDEISCDEM----LELASLGASVLHPRAVEIARNYGVPLVVRS 232
>gnl|CDD|198289 cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown
subfamily 2 of Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, unknown
subfamily 2; composed of uncharacterized bacterial
proteins, with similarity to GSTs. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes. The
GST fold contains an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain, with an active
site located in a cleft between the two domains. GSH
binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Length = 110
Score = 40.7 bits (96), Expect = 4e-04
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 78 FIHLYML-ENERNKTSIKGYKRAREE---IRDRLITLAPLFLKNKYMLGDEFSMLDVVIA 133
F L +R+ +I A + I D LA + Y+ GD F++ D+ +
Sbjct: 25 FWGLVRTPPEQRDPAAIAASLAACNKLMAILDA--QLA----RQAYLAGDRFTLADIALG 78
Query: 134 PLLWRLDYYGINLSKSASP-LIKYAERIFSRPSY 166
++R + + + + A P L ++ R+ RP++
Sbjct: 79 CSVYR--WLELPIERPALPHLERWYARLSQRPAF 110
>gnl|CDD|239345 cd03047, GST_N_2, GST_N family, unknown subfamily 2; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The sequence from
Burkholderia cepacia was identified as part of a gene
cluster involved in the degradation of
2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g.
Class Zeta and Delta) are known to catalyze
dechlorination reactions.
Length = 73
Score = 39.2 bits (92), Expect = 5e-04
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 19 RMNPYGQVPILVERDLILYESNIINEYI 46
MNP G+VP+L + D +L+ESN I Y+
Sbjct: 45 AMNPNGRVPVLEDGDFVLWESNAILRYL 72
>gnl|CDD|239355 cd03057, GST_N_Beta, GST_N family, Class Beta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Unlike mammalian GSTs which detoxify a broad
range of compounds, the bacterial class Beta GSTs
exhibit limited GSH conjugating activity with a narrow
range of substrates. In addition to GSH conjugation,
they also bind antibiotics and reduce the antimicrobial
activity of beta-lactam drugs. The structure of the
Proteus mirabilis enzyme reveals that the cysteine in
the active site forms a covalent bond with GSH.
Length = 77
Score = 39.1 bits (92), Expect = 7e-04
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 2 DFEIRDIDLFNKP---DNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFP 51
FE+ +DL K + +NP GQVP LV + +L ES I +Y+ + P
Sbjct: 24 PFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77
>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated.
Length = 448
Score = 42.9 bits (102), Expect = 7e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 705 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 755
+ L VV+ G IG TT D +AAL A + A + T V GIY +
Sbjct: 168 LLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTT 227
Query: 756 DPNKCLSAIIYKKITFDE 773
DP +A +I+F+E
Sbjct: 228 DPRIVPAAKRIDEISFEE 245
>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function
prediction only].
Length = 252
Score = 41.6 bits (98), Expect = 0.001
Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 26/168 (15%)
Query: 675 DILNKSGI--ISHVMSAISIEKFLESYIPLNAIK-YLEEGKV------VIFAGGIGNPFF 725
D L +G+ +S V + S Y L AIK LE+G V V+ G
Sbjct: 88 DALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEII 147
Query: 726 TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEV----------- 774
+ D A E+K + ++ T VDG+Y+ DP K A + +I
Sbjct: 148 SGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTG 207
Query: 775 -ISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
I+KKLE R K + +F+ K + R + G+N GT +
Sbjct: 208 GIAKKLE----ALLEIARYGK-EVYIFNGNKPENIYRALRGENVGTRI 250
>gnl|CDD|198316 cd03207, GST_C_8, C-terminal, alpha helical domain of an unknown
subfamily 8 of Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, unknown
subfamily 8; composed of Agrobacterium tumefaciens GST
and other uncharacterized bacterial proteins with
similarity to GSTs. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins,
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST fold contains
an N-terminal thioredoxin-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. GSH binds to the
N-terminal domain while the hydrophobic substrate
occupies a pocket in the C-terminal domain. The
three-dimensional structure of Agrobacterium tumefaciens
GST has been determined but there is no information on
its functional characterization.
Length = 101
Score = 39.2 bits (92), Expect = 0.001
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 98 RAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIA-PLLWRLDYYGINLSKSASPLIK- 155
A ++ +RL L Y++G+ FS D+++A L W + + P ++
Sbjct: 36 AAYGDLDERLAALEAALAGRPYLVGERFSAADLLLASVLRWARAFGLL----PEYPALRA 91
Query: 156 YAERIFSRPS 165
Y R +RP+
Sbjct: 92 YVARCTARPA 101
>gnl|CDD|182405 PRK10357, PRK10357, putative glutathione S-transferase;
Provisional.
Length = 202
Score = 40.5 bits (95), Expect = 0.002
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 9/160 (5%)
Query: 21 NPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLM--LLNFEKEI 77
NP G+VP LV E ++S II EYI+ P ++ DPL R R + L + +
Sbjct: 44 NPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDPLAALRVRQLEALADGIMDA 103
Query: 78 FIHLYMLENER--NKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL 135
+ E R + S R RE+I L L + + D ++ + IA
Sbjct: 104 ALVSVR-EQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAIACA 161
Query: 136 LWRLDYYGI--NLSKSASPLIKYAERIFSRPSYMESLTPA 173
+ L++ + L+K E +F R S+ + P
Sbjct: 162 VGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTEPPK 201
>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha
and beta subunits of the Mo storage protein (MosA and
MosB) which are related to uridine monophosphate kinase
(UMPK) enzymes that catalyze the phosphorylation of UMP
by ATP, yielding UDP, and playing a key role in
pyrimidine nucleotide biosynthesis. The Mo storage
protein from the nitrogen-fixing bacterium, Azotobacter
vinelandii, is characterized as an alpha4-beta4 octamer
containing a polynuclear molybdenum-oxide cluster which
is ATP-dependent to bind Mo and pH-dependent to release
Mo. These and related bacterial sequences in this CD are
members of the Amino Acid Kinase Superfamily (AAK).
Length = 262
Score = 41.2 bits (97), Expect = 0.002
Identities = 44/218 (20%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 623 ISEIVSCGIE--LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKS 680
+ EIV+ E L I+ GGG R + S +GM ++ L +
Sbjct: 54 VEEIVALRPEHKLLILTGGGTRARHVY--------SIGLDLGMPTGVLAKLGASVSEQNA 105
Query: 681 GIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG-----------GIGN-PFFTTD 728
+++ +++ K + +L+ G+ + +G G P TD
Sbjct: 106 EMLATLLAKHGGSKVGHGDLLQLPT-FLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTD 164
Query: 729 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLE--IMDSTA 786
A L A I A ++ DG+Y +DP K A +I+ E++ K L+ +++
Sbjct: 165 VGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPV 224
Query: 787 FSFCRDQKL--PIRVFSIIKSGALKRVIEGKNEGTLVY 822
++ + +++ + + G L R + G++ GT++
Sbjct: 225 LDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTIIR 262
>gnl|CDD|198297 cd03188, GST_C_Beta, C-terminal, alpha helical domain of Class Beta
Glutathione S-transferases. Glutathione S-transferase
(GST) C-terminal domain family, Class Beta subfamily;
GSTs are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins, and products of
oxidative stress. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. Unlike mammalian GSTs which detoxify
a broad range of compounds, the bacterial class Beta
GSTs exhibit GSH conjugating activity with a narrow
range of substrates. In addition to GSH conjugation,
they are involved in the protection against oxidative
stress and are able to bind antibiotics and reduce the
antimicrobial activity of beta-lactam drugs,
contributing to antibiotic resistance. The structure of
the Proteus mirabilis enzyme reveals that the cysteine
in the active site forms a covalent bond with GSH. One
member of this subfamily is a GST from Burkholderia
xenovorans LB400 that is encoded by the bphK gene and is
part of the biphenyl catabolic pathway.
Length = 113
Score = 38.4 bits (90), Expect = 0.002
Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 63 RARARLM-LLNF-----EKEIFIHLYMLENERNKTSIKGYKR-AREEIRDRLITLAPLFL 115
RARL+ LNF K Y + + K ARE + RL L
Sbjct: 1 LERARLLEWLNFIASELHKAFGPLFY-PARWADDALAEEVKAAARERLERRLAYLDAQLA 59
Query: 116 KNKYMLGDEFSMLD----VVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS 165
Y+LGD+FS+ D VV L W G++LS L Y R+ +RP+
Sbjct: 60 GGPYLLGDQFSVADAYLFVV---LRW-ARAVGLDLSD-WPHLAAYLARVAARPA 108
>gnl|CDD|166019 PLN02378, PLN02378, glutathione S-transferase DHAR1.
Length = 213
Score = 40.5 bits (94), Expect = 0.002
Identities = 43/202 (21%), Positives = 90/202 (44%), Gaps = 31/202 (15%)
Query: 1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
+ ++I I+L +KP ++P G+VP+L D + +S++I ++E++P DP
Sbjct: 35 LTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYP-------DP 87
Query: 61 LMRARARLMLLNFEKEIF--IHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK 118
++ A + IF ++ + N S E + + L +
Sbjct: 88 PLKTPAEFASVG--SNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKS-----HDGP 140
Query: 119 YMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRPSYMESLTPA 173
++ G+ S +D+ +AP L+ L + ++ +S + Y + +FS S+ ++ T
Sbjct: 141 FIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKT-E 199
Query: 174 EKIMQAGVHFGHQTRFWNPKMS 195
EK + +G W PK++
Sbjct: 200 EKYVISG---------WAPKVN 212
>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated.
Length = 392
Score = 40.9 bits (96), Expect = 0.003
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 22/126 (17%)
Query: 708 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 758
LE+ ++VI AG G N TT DTTA A + A+ T VDG+Y DP
Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184
Query: 759 KCLSAIIYKKITF---DEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK 815
+A I F + + K +++ + +P+RV S + G
Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVG--------- 235
Query: 816 NEGTLV 821
EGTL+
Sbjct: 236 -EGTLI 240
>gnl|CDD|198324 cd10291, GST_C_YfcG_like, C-terminal, alpha helical domain of
Escherichia coli YfcG Glutathione S-transferases and
related uncharacterized proteins. Glutathione
S-transferase (GST) C-terminal domain family, YfcG-like
subfamily; composed of the Escherichia coli YfcG and
related proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST active site is
located in a cleft between the N- and C-terminal
domains. GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain. YfcG is one of nine GST homologs in
Escherichia coli. It is expressed predominantly during
the late stationary phase where the predominant form of
GSH is glutathionylspermidine (GspSH), suggesting that
YfcG might interact with GspSH. It has very low or no
GSH transferase or peroxidase activity, but displays a
unique disulfide bond reductase activity that is
comparable to thioredoxins (TRXs) and glutaredoxins
(GRXs). However, unlike TRXs and GRXs, YfcG does not
contain a redox active cysteine residue and may use a
bound thiol disulfide couple such as 2GSH/GSSG for
activity. The crystal structure of YcfG reveals a bound
GSSG molecule in its active site. The actual
physiological substrates for YfcG are yet to be
identified.
Length = 110
Score = 38.0 bits (89), Expect = 0.003
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 80 HLYMLENERNKTSIKGY----KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL 135
H E+ +IK Y KR + RL K+KY+ GDE+S+ D+ I P
Sbjct: 25 HFKRYAPEKIPYAIKRYTNETKRLYGVLDRRLA-------KSKYLAGDEYSIADIAIWPW 77
Query: 136 LWRLDYYGINLSKSASPLIKYAERIFSRP 164
+ R ++ GI+L L ++ ER+ +RP
Sbjct: 78 VARHEWQGIDL-ADFPNLKRWFERLAARP 105
>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase
Superfamily (AAK), AK-LysC-like; this CD includes the
N-terminal catalytic aspartokinase (AK) domain of the
lysine-sensitive AK isoenzyme found in higher plants.
The lysine-sensitive AK isoenzyme is a monofunctional
protein. It is involved in the overall regulation of the
aspartate pathway and can be synergistically inhibited
by S-adenosylmethionine. Also included in this CD is an
uncharacterized LysC-like AK found in Euryarchaeota and
some bacteria. AK catalyzes the conversion of aspartate
and ATP to aspartylphosphate and ADP.
Length = 298
Score = 40.4 bits (95), Expect = 0.003
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 708 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 758
LE+GK+ + G IG + TT D +A + A + A+ I VDG+ +DP
Sbjct: 181 LEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPR 240
Query: 759 KCLSAIIYKKITFDEVISKKL---EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK 815
A ++++ E + +++ ++ +P+RV K +
Sbjct: 241 IVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRV---------KNTFNPE 291
Query: 816 NEGTLV 821
GTL+
Sbjct: 292 APGTLI 297
>gnl|CDD|239358 cd03060, GST_N_Omega_like, GST_N family, Omega-like subfamily;
composed of uncharacterized proteins with similarity to
class Omega GSTs. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. Class Omega GSTs show little
or no GSH-conjugating activity towards standard GST
substrates. Instead, they catalyze the GSH dependent
reduction of protein disulfides, dehydroascorbate and
monomethylarsonate, activities which are more
characteristic of glutaredoxins. Like Omega enzymes,
proteins in this subfamily contain a conserved cysteine
equivalent to the first cysteine in the CXXC motif of
glutaredoxins, which is a redox active residue capable
of reducing GSH mixed disulfides in a monothiol
mechanism.
Length = 71
Score = 36.6 bits (85), Expect = 0.005
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 2 DFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYES 39
E+R+++L NKP + +P G VP+LV ++ ES
Sbjct: 25 TVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEES 63
>gnl|CDD|166036 PLN02395, PLN02395, glutathione S-transferase.
Length = 215
Score = 39.1 bits (91), Expect = 0.005
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 24/189 (12%)
Query: 1 MDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY--PQL 55
++FE +DL +K + P+G VP++V+ D ++ES I Y E++ P L
Sbjct: 25 VEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQGPDL 84
Query: 56 MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGY-------KRAREEIRDRLI 108
+ R + L L L S G+ K + E++ L
Sbjct: 85 LGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLD 144
Query: 109 TLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-------YAERIF 161
K+KY+ GD S+ D+ P +Y + K+ LIK + + I
Sbjct: 145 VYEARLSKSKYLAGDFVSLADLAHLPF---TEYLVGPIGKAY--LIKDRKHVSAWWDDIS 199
Query: 162 SRPSYMESL 170
SRP++ E L
Sbjct: 200 SRPAWKEVL 208
>gnl|CDD|198303 cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown
subfamily 3 of Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, unknown
subfamily 3; composed of uncharacterized proteins with
similarity to GSTs. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins,
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST fold contains
an N-terminal thioredoxin-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. GSH binds to the
N-terminal domain while the hydrophobic substrate
occupies a pocket in the C-terminal domain.
Length = 115
Score = 37.1 bits (87), Expect = 0.007
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 119 YMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYME 168
++ G EFS+ D AP++ R YG+ LS +A Y E + + P+ E
Sbjct: 66 FLFG-EFSIADAFYAPVVTRFRTYGVPLSPAAR---AYVEALLALPAMQE 111
>gnl|CDD|223623 COG0549, ArcC, Carbamate kinase [Amino acid transport and
metabolism].
Length = 312
Score = 39.2 bits (92), Expect = 0.009
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 700 IPLNAIKYL-EEGKVVIFAGGIGNPFFTT-------------DTTAALRAAEIKAEIILK 745
+ AIK L E G VVI AGG G P D +AL A +I A++++
Sbjct: 172 VEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLII 231
Query: 746 ATKVDGIY 753
T VD +Y
Sbjct: 232 LTDVDAVY 239
>gnl|CDD|239343 cd03045, GST_N_Delta_Epsilon, GST_N family, Class Delta and
Epsilon subfamily; GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The class Delta and
Epsilon subfamily is made up primarily of insect GSTs,
which play major roles in insecticide resistance by
facilitating reductive dehydrochlorination of
insecticides or conjugating them with GSH to produce
water-soluble metabolites that are easily excreted.
They are also implicated in protection against cellular
damage by oxidative stress.
Length = 74
Score = 35.3 bits (82), Expect = 0.012
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 2 DFEIRDIDLFN----KPDNIFRMNPYGQVPILVERDLILYESNIINEY 45
+ +++++L KP+ + ++NP VP LV+ +L+ES+ I Y
Sbjct: 25 ELNLKEVNLMKGEHLKPEFL-KLNPQHTVPTLVDNGFVLWESHAILIY 71
>gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily
(AAK), AK-HSDH; this CD includes the N-terminal
catalytic domain of aspartokinase (AK) of the
bifunctional enzyme AK - homoserine dehydrogenase
(HSDH). These aspartokinases are found in bacteria (E.
coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and
higher plants (Z. mays AK-HSDH). AK and HSDH are the
first and third enzymes in the biosynthetic pathway of
the aspartate family of amino acids. AK catalyzes the
phosphorylation of Asp to P-aspartyl phosphate. HSDH
catalyzes the NADPH-dependent conversion of Asp
3-semialdehyde to homoserine. ThrA and MetL are involved
in threonine and methionine biosynthesis, respectively.
In E. coli, ThrA is subject to allosteric regulation by
the end product L-threonine and the native enzyme is
reported to be tetrameric. As with bacteria, plant AK
and HSDH are feedback inhibited by pathway end products.
Maize AK-HSDH is a Thr-sensitive 180-kD enzyme.
Arabidopsis AK-HSDH is an alanine-activated,
threonine-sensitive enzyme whose ACT domains, located
C-terminal to the AK catalytic domain, were shown to be
involved in allosteric activation.
Length = 294
Score = 38.3 bits (90), Expect = 0.013
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE 773
D +AA+ AA + A+ + T VDG+Y++DP K A + +++ E
Sbjct: 206 DYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQE 251
>gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K)
domain of the bifunctional delta
1-pyrroline-5-carboxylate synthetase (P5CS), composed of
an N-terminal G5K (ProB) and a C-terminal glutamyl 5-
phosphate reductase (G5PR, ProA), the first and second
enzyme catalyzing proline (and, in mammals, ornithine)
biosynthesis. G5K transfers the terminal phosphoryl
group of ATP to the gamma-carboxyl group of glutamate,
and is subject to feedback allosteric inhibition by
proline or ornithine. In plants, proline plays an
important role as an osmoprotectant and, in mammals,
ornithine biosynthesis is crucial for proper ammonia
detoxification, since a G5K mutation has been shown to
cause human hyperammonaemia.
Length = 284
Score = 38.2 bits (89), Expect = 0.014
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIY-------KKITFDEVISKKLE 780
D+ AA A E+KA++++ + VDG+Y+ P + +I+ + ITF
Sbjct: 181 DSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFGTKSRVGTG 240
Query: 781 IMDS--TAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 820
M++ A + + + + + + +++EGK GT
Sbjct: 241 GMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTF 282
>gnl|CDD|239348 cd03050, GST_N_Theta, GST_N family, Class Theta subfamily;
composed of eukaryotic class Theta GSTs and bacterial
dichloromethane (DCM) dehalogenase. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. Mammalian
class Theta GSTs show poor GSH conjugating activity
towards the standard substrates, CDNB and ethacrynic
acid, differentiating them from other mammalian GSTs.
GSTT1-1 shows similar cataytic activity as bacterial
DCM dehalogenase, catalyzing the GSH-dependent
hydrolytic dehalogenation of dihalomethanes. This is an
essential process in methylotrophic bacteria to enable
them to use chloromethane and DCM as sole carbon and
energy sources. The presence of polymorphisms in human
GSTT1-1 and its relationship to the onset of diseases
including cancer is subject of many studies. Human
GSTT2-2 exhibits a highly specific sulfatase activity,
catalyzing the cleavage of sulfate ions from aralkyl
sufate esters, but not from aryl or alkyl sulfate
esters.
Length = 76
Score = 34.9 bits (81), Expect = 0.019
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 1 MDFEIRDIDLFNKP---DNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50
+ FE IDL ++NP+G+VP +V+ D L ES I Y+ +F
Sbjct: 24 IPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76
>gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed.
Length = 307
Score = 37.9 bits (89), Expect = 0.023
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 15/65 (23%)
Query: 704 AIKYL-EEGKVVIFAGGIGNPFFTT--------------DTTAALRAAEIKAEIILKATK 748
I++L E+G +VI AGG G P D AAL A ++ A+++L T
Sbjct: 167 PIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTD 226
Query: 749 VDGIY 753
VD +Y
Sbjct: 227 VDAVY 231
>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K)
catalyzes glutamate-dependent ATP cleavage; G5K
transfers the terminal phosphoryl group of ATP to the
gamma-carboxyl group of glutamate, in the first and
controlling step of proline (and, in mammals, ornithine)
biosynthesis. G5K is subject to feedback allosteric
inhibition by proline or ornithine. In microorganisms
and plants, proline plays an important role as an
osmoprotectant and, in mammals, ornithine biosynthesis
is crucial for proper ammonia detoxification, since a
G5K mutation has been shown to cause human
hyperammonaemia. Microbial G5K generally consists of two
domains: a catalytic G5K domain and one PUA (pseudo
uridine synthases and archaeosine-specific
transglycosylases) domain, and some lack the PUA domain.
G5K requires free Mg for activity, it is tetrameric, and
it aggregates to higher forms in a proline-dependent
way. G5K lacking the PUA domain remains tetrameric,
active, and proline-inhibitable, but the Mg requirement
and the proline-triggered aggregation are greatly
diminished and abolished, respectively, and more proline
is needed for inhibition. Although plant and animal G5Ks
are part of a bifunctional polypeptide, delta
1-pyrroline-5-carboxylate synthetase (P5CS), composed of
an N-terminal G5K (ProB) and a C-terminal glutamyl 5-
phosphate reductase (G5PR; ProA); bacterial and yeast
G5Ks are monofunctional single-polypeptide enzymes. In
this CD, all three domain architectures are present:
G5K, G5K+PUA, and G5K+G5PR.
Length = 251
Score = 37.4 bits (88), Expect = 0.023
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 728 DTTAALRAAEIKAE--IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDST 785
D +AL A + A+ I+L + VDG+Y+ +P + A K I E I+ ++E M
Sbjct: 145 DRLSALVAGLVNADLLILL--SDVDGLYDKNPRENPDA---KLIPEVEEITDEIEAMAGG 199
Query: 786 A 786
+
Sbjct: 200 S 200
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 37.3 bits (87), Expect = 0.026
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 339 AVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
A+ EA +NIP+I + DT+ + ++ IP N+ +SIAL
Sbjct: 133 AIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIAL 173
Score = 35.0 bits (81), Expect = 0.14
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 15/64 (23%)
Query: 170 LTPAE----KIMQAGVHFGHQTRFWNPKMSSYIFGHRNK--IHIINLEKTLYMYEK---A 220
LTP E K++ H G T+ M Y++ R K +HIINL KT +EK A
Sbjct: 8 LTPKEDDIKKMLACKCHIG--TKNLENAMKKYVY-KRTKEGVHIINLAKT---WEKLKLA 61
Query: 221 IRYI 224
R I
Sbjct: 62 ARVI 65
>gnl|CDD|198325 cd10292, GST_C_YghU_like, C-terminal, alpha helical domain of
Escherichia coli Yghu Glutathione S-transferases and
related uncharacterized proteins. Glutathione
S-transferase (GST) C-terminal domain family, YghU-like
subfamily; composed of the Escherichia coli YghU and
related proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST active site is
located in a cleft between the N- and C-terminal
domains. GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain. YghU is one of nine GST homologs in
the genome of Escherichia coli. It is similar to
Escherichia coli YfcG in that it has poor GSH
transferase activity towards typical substrates. It
shows modest reductase activity towards some organic
hydroperoxides. Like YfcG, YghU also shows good
disulfide bond oxidoreductase activity comparable to the
activities of glutaredoxins and thioredoxins. YghU does
not contain a redox active cysteine residue, and may use
a bound thiol disulfide couple such as 2GSH/GSSG for
activity. The crystal structure of YghU reveals two GSH
molecules bound in its active site.
Length = 118
Score = 35.5 bits (82), Expect = 0.027
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 78 FIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP--- 134
F H Y + + +I R E + +L L +KY+ GDE+++ D+ I P
Sbjct: 23 FGHFYSYAPVKIEYAID---RFTMEAKRQLDVLDRQLATHKYLAGDEYTIADMAIWPWYG 79
Query: 135 --LLWRLDYYGINLS-KSASPLIKYAERIFSRPS 165
L L L + ++A+ I +RP+
Sbjct: 80 GLALGSLYDAAEFLDVDEYKHVQRWAKDIAARPA 113
>gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a
fosfomycin biosynthetic gene product, FomA, and similar
proteins found in a wide range of organisms. Together,
the fomA and fomB genes in the fosfomycin biosynthetic
gene cluster of Streptomyces wedmorensis confer
high-level fosfomycin resistance. FomA and FomB proteins
converted fosfomycin to fosfomycin monophosphate and
fosfomycin diphosphate in the presence of ATP and a
magnesium ion, indicating that FomA and FomB catalyzed
phosphorylations of fosfomycin and fosfomycin
monophosphate, respectively. FomA and related sequences
in this CD are members of the Amino Acid Kinase
Superfamily (AAK).
Length = 252
Score = 36.9 bits (86), Expect = 0.032
Identities = 50/248 (20%), Positives = 87/248 (35%), Gaps = 40/248 (16%)
Query: 605 KGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG---NICRGISNKIQNIDRSTADYM 661
K I ++ I E++E + +L +V GGG + +A+
Sbjct: 14 KDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPDGDGSFSAE-- 69
Query: 662 GMLATIINSLAL----FDILNKSGIIS---HVMSAISIEKFLESYIPLNAI-KYLEEGKV 713
G+ T L L D L ++G+ + S E L I + L+ G V
Sbjct: 70 GVAETHEAMLELNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFV 129
Query: 714 ------VIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDP--NKCLSAII 765
V+ G G + D A +K E ++ T VDG+Y+ P K + I
Sbjct: 130 PVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEID 189
Query: 766 YKKITFDEV------------ISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 813
+ ++ K+E + A + + + +F+ K L R +
Sbjct: 190 VGSLEDILAALGSAGTDVTGGMAGKIEELLELA-----RRGIEVYIFNGDKPENLYRALL 244
Query: 814 GKNEGTLV 821
G GT +
Sbjct: 245 GNFIGTRI 252
>gnl|CDD|166114 PLN02473, PLN02473, glutathione S-transferase.
Length = 214
Score = 36.5 bits (84), Expect = 0.039
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 1 MDFEIRDIDL----FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50
++FE+ +DL KP+++ R P+GQVP + + DL L+ES I Y ++
Sbjct: 26 IEFEVIHVDLDKLEQKKPEHLLR-QPFGQVPAIEDGDLKLFESRAIARYYATKY 78
>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated.
Length = 341
Score = 37.0 bits (86), Expect = 0.045
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 708 LEEGKVVIFAGGIG--NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 759
LE G+V + G IG N F T D +A + A+ +L + V+GIY +DP
Sbjct: 164 LERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKL 223
Query: 760 CLSAIIYKKITFDEV-ISKKL 779
SA + +++DE I+ KL
Sbjct: 224 VPSARLIPYLSYDEALIAAKL 244
>gnl|CDD|224965 COG2054, COG2054, Uncharacterized archaeal kinase related to
aspartokinases, uridylate kinases [General function
prediction only].
Length = 212
Score = 36.0 bits (83), Expect = 0.060
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 726 TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAII 765
T+D+ + AA+ A ++KAT VDGIY DP L I
Sbjct: 117 TSDSISVWIAAKAGATEVVKATDVDGIYEEDPKGKLVREI 156
>gnl|CDD|202084 pfam01997, Translin, Translin family. Members of this family
include Translin that interacts with DNA and forms a
ring around the DNA. This family also includes human
translin-associated protein X, which was found to
interact with translin with yeast two-hybrid screen.
Length = 187
Score = 35.6 bits (83), Expect = 0.060
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 935 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKN 972
+ REE++K+ ++IT +K +I + R E ++LLK
Sbjct: 2 DAREELIKISRDITRLSKKAIFALHRGDAEEAEELLKE 39
>gnl|CDD|237071 PRK12353, PRK12353, putative amino acid kinase; Reviewed.
Length = 314
Score = 36.3 bits (85), Expect = 0.069
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 702 LNAIKYL-EEGKVVIFAGGIGNPFFTT-------------DTTAALRAAEIKAEIILKAT 747
+ AIK L + G+VVI AGG G P D +A A + A++++ T
Sbjct: 175 IEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILT 234
Query: 748 KVDGIY 753
VD +Y
Sbjct: 235 AVDKVY 240
>gnl|CDD|239773 cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amino acid
kinase-like proteins found mainly in archaea and a few
bacteria. Sequences in this CD are members of the Amino
Acid Kinase (AAK) superfamily.
Length = 203
Score = 35.4 bits (82), Expect = 0.078
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 726 TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAII 765
T+D+ AA A ++ A+ ++ T VDGIY + + L I
Sbjct: 115 TSDSIAAWLAKKLGAKRLVIVTDVDGIY--EKDGKLVNEI 152
>gnl|CDD|239347 cd03049, GST_N_3, GST_N family, unknown subfamily 3; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains.
Length = 73
Score = 32.6 bits (75), Expect = 0.093
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 2 DFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYID 47
D E+ ++ ++ +++ +NP G++P LV + L++S +I EY+D
Sbjct: 27 DVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73
>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily
(AAK), AK-DapDC; this CD includes the N-terminal
catalytic aspartokinase (AK) domain of the bifunctional
enzyme AK - DAP decarboxylase (DapDC) found in some
bacteria. Aspartokinase is the first enzyme in the
aspartate metabolic pathway, catalyzes the conversion of
aspartate and ATP to aspartylphosphate and ADP. DapDC,
which is the lysA gene product, catalyzes the
decarboxylation of DAP to lysine.
Length = 295
Score = 35.6 bits (82), Expect = 0.11
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 727 TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD---EVISKKLEIMD 783
+DT+AA AA+++A T V G++ ++P++ A + K++ +D E+ + +++
Sbjct: 206 SDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLH 265
Query: 784 STAFSFCRDQKLPIRVFS 801
R +P+ V S
Sbjct: 266 PRCIPPARRANIPMVVRS 283
>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
Length = 718
Score = 35.9 bits (83), Expect = 0.11
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 11/65 (16%)
Query: 717 AGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIY--------KK 768
+ GI F+ D+ AAL A E+KA++++ + V+G+Y P+ S +I+ +
Sbjct: 170 SSGI---FWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDE 226
Query: 769 ITFDE 773
ITF E
Sbjct: 227 ITFGE 231
>gnl|CDD|239342 cd03044, GST_N_EF1Bgamma, GST_N family, Gamma subunit of
Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma
is part of the eukaryotic translation elongation
factor-1 (EF1) complex which plays a central role in
the elongation cycle during protein biosynthesis. EF1
consists of two functionally distinct units, EF1A and
EF1B. EF1A catalyzes the GTP-dependent binding of
aminoacyl-tRNA to the ribosomal A site concomitant with
the hydrolysis of GTP. The resulting inactive EF1A:GDP
complex is recycled to the active GTP form by the
guanine-nucleotide exchange factor EF1B, a complex
composed of at least two subunits, alpha and gamma.
Metazoan EFB1 contain a third subunit, beta. The EF1B
gamma subunit contains a GST fold consisting of an
N-terminal TRX-fold domain and a C-terminal alpha
helical domain. The GST-like domain of EF1Bgamma is
believed to mediate the dimerization of the EF1
complex, which in yeast is a dimer of the heterotrimer
EF1A:EF1Balpha:EF1Bgamma. In addition to its role in
protein biosynthesis, EF1Bgamma may also display other
functions. The recombinant rice protein has been shown
to possess GSH conjugating activity. The yeast
EF1Bgamma binds membranes in a calcium dependent manner
and is also part of a complex that binds to the msrA
(methionine sulfoxide reductase) promoter suggesting a
function in the regulation of its gene expression.
Length = 75
Score = 32.6 bits (75), Expect = 0.12
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 2 DFEIRDIDLF--NKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYI 46
D EI D NK + P G+VP L+ESN I Y+
Sbjct: 25 DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV 72
>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
decarboxylase protein; Provisional.
Length = 861
Score = 35.4 bits (82), Expect = 0.15
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 727 TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD---EVISKKLEIMD 783
+DT+AA AA++ A + T V G+++++P + A + ++ +D E+ + +++
Sbjct: 215 SDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH 274
Query: 784 STAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNE 817
+ CRD +P+ + + I+G E
Sbjct: 275 PRSIKPCRDAGIPMAILDTERPDLSGTSIDGDAE 308
>gnl|CDD|239340 cd03042, GST_N_Zeta, GST_N family, Class Zeta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Zeta GSTs, also known as
maleylacetoacetate (MAA) isomerases, catalyze the
isomerization of MAA to fumarylacetoacetate, the
penultimate step in tyrosine/phenylalanine catabolism,
using GSH as a cofactor. They show little
GSH-conjugating activity towards traditional GST
substrates but display modest GSH peroxidase activity.
They are also implicated in the detoxification of the
carcinogen dichloroacetic acid by catalyzing its
dechlorination to glyoxylic acid.
Length = 73
Score = 32.2 bits (74), Expect = 0.17
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 2 DFEIRDIDLF----NKPDNIFR-MNPYGQVPILVERDLILYESNIINEYID 47
D+E ++L P +R +NP G VP LV L+L +S I EY+D
Sbjct: 25 DYEYVPVNLLKGEQLSPA--YRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73
>gnl|CDD|239768 cd04235, AAK_CK, AAK_CK: Carbamate kinase (CK) catalyzes both the
ATP-phosphorylation of carbamate and carbamoyl phosphate
(CP) utilization with the production of ATP from ADP and
CP. Both CK (this CD) and nonhomologous CP synthetase
synthesize carbamoyl phosphate, an essential precursor
of arginine and pyrimidine bases, in the presence of
ATP, bicarbonate, and ammonia. CK is a homodimer of 33
kDa subunits and is a member of the Amino Acid Kinase
Superfamily (AAK).
Length = 308
Score = 34.8 bits (81), Expect = 0.19
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
Query: 702 LNAIKYL-EEGKVVIFAGGIGNPFFTT-------------DTTAALRAAEIKAEIILKAT 747
+ AIK L + G +VI AGG G P D +AL A EI A++++ T
Sbjct: 171 IEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILT 230
Query: 748 KVDGIY 753
VD +Y
Sbjct: 231 DVDNVY 236
>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine
dehydrogenase I; Provisional.
Length = 819
Score = 35.1 bits (82), Expect = 0.22
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 684 SHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGI-GNPFFTT--------DTTAALR 734
S V A S + S+IP V++ G GN D +AA+
Sbjct: 163 STVDIAESTRRIAASFIP--------ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAIL 214
Query: 735 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE 773
AA + A+ T VDG+Y +DP A + K +++ E
Sbjct: 215 AACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQE 253
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This
protein contains a glutamate 5-kinase (ProB, EC
2.7.2.11) region followed by a gamma-glutamyl phosphate
reductase (ProA, EC 1.2.1.41) region [Amino acid
biosynthesis, Glutamate family].
Length = 715
Score = 34.9 bits (80), Expect = 0.25
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 724 FFTTDTTAALRAAEIKAEIILKATKVDGIYN---SDPNKCLSAIIYK-----KITFDEVI 775
F+ D+ AAL A E+KA++++ + V+G+Y+ SD + L YK +ITF
Sbjct: 166 FWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGT-- 223
Query: 776 SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGA----LKRVIEGKNEGTLVYE 823
+L TA II SG + +V+EGK GTL +E
Sbjct: 224 KSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHE 275
>gnl|CDD|181831 PRK09411, PRK09411, carbamate kinase; Reviewed.
Length = 297
Score = 34.4 bits (79), Expect = 0.26
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 700 IPLNAIKYL-EEGKVVIFAGGIGNPFFTT----------DTTAALRAAEIKAEIILKATK 748
+ AI+ L +EG VVI +GG G P D AAL A +I A+ ++ T
Sbjct: 164 LDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTD 223
Query: 749 VDGIY 753
D +Y
Sbjct: 224 ADAVY 228
>gnl|CDD|239780 cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kinase Superfamily
(AAK), AK-Hom3; this CD includes the N-terminal
catalytic domain of the aspartokinase HOM3, a
monofunctional class enzyme found in Saccharomyces
cerevisiae and other related AK domains. Aspartokinase,
the first enzyme in the aspartate metabolic pathway,
catalyzes the conversion of aspartate and ATP to
aspartylphosphate and ADP, and in fungi, is responsible
for the production of threonine, isoleucine and
methionine. S. cerevisiae has a single aspartokinase
isoenzyme type, which is regulated by feedback,
allosteric inhibition by L-threonine. Recent studies
show that the allosteric transition triggered by binding
of threonine to AK involves a large change in the
conformation of the native hexameric enzyme that is
converted to an inactive one of different shape and
substantially smaller hydrodynamic size.
Length = 306
Score = 34.3 bits (79), Expect = 0.29
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 727 TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTA 786
TD AAL A + A+ + +VDGI+ +DP K +A + IT +E + +L S
Sbjct: 215 TDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEE--AAELTYYGSEV 272
Query: 787 F-SFCRDQ----KLPIRVFSIIKSGALKRVIEGKNEGTLVY 822
F +Q ++PIR+ K V + EGT++Y
Sbjct: 273 IHPFTMEQVIKARIPIRI---------KNVENPRGEGTVIY 304
>gnl|CDD|239350 cd03052, GST_N_GDAP1, GST_N family, Ganglioside-induced
differentiation-associated protein 1 (GDAP1) subfamily;
GDAP1 was originally identified as a highly expressed
gene at the differentiated stage of GD3
synthase-transfected cells. More recently, mutations in
GDAP1 have been reported to cause both axonal and
demyelinating autosomal-recessive Charcot-Marie-Tooth
(CMT) type 4A neuropathy. CMT is characterized by slow
and progressive weakness and atrophy of muscles.
Sequence analysis of GDAP1 shows similarities and
differences with GSTs; it appears to contain both
N-terminal TRX-fold and C-terminal alpha helical
domains of GSTs, however, it also contains additional
C-terminal transmembrane domains unlike GSTs. GDAP1 is
mainly expressed in neuronal cells and is localized in
the mitochondria through its transmembrane domains. It
does not exhibit GST activity using standard
substrates.
Length = 73
Score = 31.0 bits (70), Expect = 0.39
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 19 RMNPYGQVPILVERDLILYESNIINEYID 47
R+NP G+VP+L+ D I+ + I +Y++
Sbjct: 45 RLNPTGEVPVLIHGDNIICDPTQIIDYLE 73
>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional.
Length = 465
Score = 33.7 bits (78), Expect = 0.45
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 25/128 (19%)
Query: 708 LEEGKV-VI--FAGGIGNPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 758
L+EG + V+ F G TT D +AA+ A + A+ I T VDG+ +DP
Sbjct: 185 LKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPR 244
Query: 759 KCLSAIIYKKITFDEVISKKL-----EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 813
A + KI++ E + +L +++ ++ +P+RV K
Sbjct: 245 IVPEARVIPKISYIEAM--ELSYFGAKVLHPRTIEPAMEKGIPVRV---------KNTFN 293
Query: 814 GKNEGTLV 821
+ GTL+
Sbjct: 294 PEFPGTLI 301
>gnl|CDD|198291 cd03182, GST_C_GTT2_like, C-terminal, alpha helical domain of
GTT2-like Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family,
Saccharomyces cerevisiae GTT2-like subfamily; composed
of predominantly uncharacterized proteins with
similarity to the Saccharomyces cerevisiae GST protein,
GTT2. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins, and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. GTT2, a homodimer, exhibits GST
activity with standard substrates. Strains with deleted
GTT2 genes are viable but exhibit increased sensitivity
to heat shock.
Length = 116
Score = 31.5 bits (72), Expect = 0.66
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 24/95 (25%)
Query: 88 RNKTSIKGYKR------AREEIRDRLITLAPLF---LKNK-YMLGDEFSMLDVV------ 131
R+ T R E + R+I P+ L Y+ GD FS+ D+
Sbjct: 28 RHATPGLKPDREVQVPEWGERNKKRVIDFLPVLDKRLAESPYVAGDRFSIADITAFVALD 87
Query: 132 -IAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS 165
L + + + L ++ ER+ +RPS
Sbjct: 88 FAKNLKLPVP-------EELTALRRWYERMAARPS 115
>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain. This small domain is composed of
three alpha helices. This family includes the previously
defined UBA and TS-N domains. The UBA-domain (ubiquitin
associated domain) is a novel sequence motif found in
several proteins having connections to ubiquitin and the
ubiquitination pathway. The structure of the UBA domain
consists of a compact three helix bundle. This domain is
found at the N terminus of EF-TS hence the name TS-N.
The structure of EF-TS is known and this domain is
implicated in its interaction with EF-TU. The domain has
been found in non EF-TS proteins such as alpha-NAC and
MJ0280.
Length = 37
Score = 29.3 bits (67), Expect = 0.68
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEIL 426
D + + +LR E KKAL NG + +A E L
Sbjct: 2 DEELIKQLREMG-FSREEAKKALRATNGNVERAVEYL 37
>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.
Length = 372
Score = 33.1 bits (77), Expect = 0.76
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 728 DTTAALRAAEIKAE--IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIM 782
DT +AL A ++A+ I+L T VDG+Y +DP K A K I E I+ +LE M
Sbjct: 154 DTLSALVANLVEADLLILL--TDVDGLYTADPRKNPDA---KLIPEVEEITDELEAM 205
>gnl|CDD|239337 cd03039, GST_N_Sigma_like, GST_N family, Class Sigma_like;
composed of GSTs belonging to class Sigma and similar
proteins, including GSTs from class Mu, Pi and Alpha.
GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. Vertebrate class Sigma GSTs
are characterized as GSH-dependent hematopoietic
prostaglandin (PG) D synthases and are responsible for
the production of PGD2 by catalyzing the isomerization
of PGH2. The functions of PGD2 include the maintenance
of body temperature, inhibition of platelet
aggregation, bronchoconstriction, vasodilation and
mediation of allergy and inflammation. Other class
Sigma members include the class II insect GSTs,
S-crystallins from cephalopods and 28-kDa GSTs from
parasitic flatworms. Drosophila GST2 is associated with
indirect flight muscle and exhibits preference for
catalyzing GSH conjugation to lipid peroxidation
products, indicating an anti-oxidant role. S-crystallin
constitutes the major lens protein in cephalopod eyes
and is responsible for lens transparency and proper
refractive index. The 28-kDa GST from Schistosoma is a
multifunctional enzyme, exhibiting GSH transferase, GSH
peroxidase and PGD2 synthase activities, and may play
an important role in host-parasite interactions. Also
members are novel GSTs from the fungus Cunninghamella
elegans, designated as class Gamma, and from the
protozoan Blepharisma japonicum, described as a
light-inducible GST.
Length = 72
Score = 29.8 bits (68), Expect = 1.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 22 PYGQVPILVERDLILYESNIINEYI 46
P+GQ+P+L L +SN I Y+
Sbjct: 46 PFGQLPVLEIDGKKLTQSNAILRYL 70
>gnl|CDD|239341 cd03043, GST_N_1, GST_N family, unknown subfamily 1; composed of
uncharacterized proteins, predominantly from bacteria,
with similarity to GSTs. GSTs are cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains.
Length = 73
Score = 29.5 bits (67), Expect = 1.5
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 2 DFEIRDIDLFNK--PDNIFRMNPYGQVPILVERDLILYESNIINEYI 46
FE + L+ I +P G+VP+LV+ +++++S I EY+
Sbjct: 26 PFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72
>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed.
Length = 454
Score = 32.1 bits (74), Expect = 1.5
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 18/73 (24%)
Query: 707 YLEEGKVVIFA-GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAII 765
++G++V F+ GG +D T A+ A +KA++ T VDGIY ++P I+
Sbjct: 185 VTKDGQIVTFSRGG-------SDITGAILARGVKADLYENFTDVDGIYAANPR-----IV 232
Query: 766 Y-----KKITFDE 773
K+IT+ E
Sbjct: 233 KNPKSIKEITYRE 245
>gnl|CDD|183535 PRK12454, PRK12454, carbamate kinase-like carbamoyl phosphate
synthetase; Reviewed.
Length = 313
Score = 31.9 bits (73), Expect = 1.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 704 AIKYL-EEGKVVIFAGGIGNPFFTT-------------DTTAALRAAEIKAEIILKATKV 749
IK L E G +VI +GG G P D + L A E+ A+I + T V
Sbjct: 177 VIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDV 236
Query: 750 DGIY 753
+ +Y
Sbjct: 237 EKVY 240
>gnl|CDD|198288 cd03178, GST_C_Ure2p_like, C-terminal, alpha helical domain of
Ure2p and related Glutathione S-transferase-like
proteins. Glutathione S-transferase (GST) C-terminal
domain family, Ure2p-like subfamily; composed of the
Saccharomyces cerevisiae Ure2p, YfcG and YghU from
Escherichia coli, and related GST-like proteins. Ure2p
is a regulator for nitrogen catabolism in yeast. It
represses the expression of several gene products
involved in the use of poor nitrogen sources when rich
sources are available. A transmissible conformational
change of Ure2p results in a prion called [Ure3], an
inactive, self-propagating and infectious amyloid. Ure2p
displays a GST fold containing an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain. The N-terminal thioredoxin-fold domain is
sufficient to induce the [Ure3] phenotype and is also
called the prion domain of Ure2p. In addition to its
role in nitrogen regulation, Ure2p confers protection to
cells against heavy metal ion and oxidant toxicity, and
shows glutathione (GSH) peroxidase activity. YfcG and
YghU are two of the nine GST homologs in the genome of
Escherichia coli. They display very low or no GSH
transferase, but show very good disulfide bond
oxidoreductase activity. YghU also shows modest organic
hydroperoxide reductase activity. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of GSH with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST active site is
located in a cleft between the N- and C-terminal
domains. GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain.
Length = 110
Score = 30.3 bits (69), Expect = 1.5
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 80 HLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWR 138
H E+ +I+ R +E++ RL + L Y+ G+E+S+ D+ + P
Sbjct: 25 HFLYFAPEKIPYAIE---RYTDEVK-RLYGVLDKRLSDRPYLAGEEYSIADIALYPWTHY 80
Query: 139 LDYYGINLSKSASPLIK-YAERIFSRPS 165
D G S P +K + ERI +RP+
Sbjct: 81 ADLGGFA-DLSEYPNVKRWLERIAARPA 107
>gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase
Superfamily (AAK), AKiii-YclM-BS; this CD includes the
N-terminal catalytic aspartokinase (AK) domain of the
lysine plus threonine-sensitive aspartokinase isoenzyme
AKIII, a monofunctional class enzyme found in Bacilli
(Bacillus subtilis YclM) and Clostridia species.
Aspartokinase is the first enzyme in the aspartate
metabolic pathway and catalyzes the conversion of
aspartate and ATP to aspartylphosphate and ADP. In
Bacillus subtilis (BS), YclM is reported to be a single
polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is
induced by lysine and repressed by threonine, and it is
synergistically inhibited by lysine and threonine.
Length = 288
Score = 31.9 bits (73), Expect = 1.6
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 707 YLEEGKVVIFA-GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAII 765
Y + G + F+ GG +D T A+ A +A++ T VDGIY ++P +
Sbjct: 185 YSKNGDIKTFSRGG-------SDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKP 237
Query: 766 YKKITFDE 773
++T+ E
Sbjct: 238 ISEMTYRE 245
>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit,
putative. This family consists of proteins restricted
to and found as paralogous pairs (typically close
together) in species of Pyrococcus, a hyperthermophilic
archaeal genus. Members are always found close to other
genes of threonine biosynthesis and appear to represent
the Pyrococcal form of aspartate kinase. Alignment to
aspartokinase III from E. coli shows that 300 N-terminal
and 20 C-terminal amino acids are homologous, but the
form in Pyrococcus lacks ~ 100 amino acids in between
[Amino acid biosynthesis, Aspartate family].
Length = 327
Score = 32.1 bits (73), Expect = 1.6
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 705 IKYLEEGKVVIFAGGIG--NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSD 756
+ LE GK+ + G G N + T D +A + ++++ + V+GI+ +D
Sbjct: 151 YEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTAD 210
Query: 757 PNKCLSAIIYKKITFDEV-ISKKL 779
P SA + ++++E+ I+ KL
Sbjct: 211 PKLVPSARLIPYLSYEEIKIAAKL 234
>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine
dehydrogenase II; Provisional.
Length = 810
Score = 32.2 bits (74), Expect = 1.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 747 TKVDGIYNSDPNKCLSAIIYKKITFDE 773
+ V G+Y++DP K A + + DE
Sbjct: 230 SDVAGVYSADPRKVKDACLLPLLRLDE 256
>gnl|CDD|198310 cd03201, GST_C_DHAR, C-terminal, alpha helical domain of
Dehydroascorbate Reductase. Glutathione S-transferase
(GST) C-terminal domain family, Dehydroascorbate
Reductase (DHAR) subfamily; composed of plant-specific
DHARs, which are monomeric enzymes catalyzing the
reduction of DHA into ascorbic acid (AsA) using
glutathione as the reductant. DHAR allows plants to
recycle oxidized AsA before it is lost. AsA serves as a
cofactor of violaxanthin de-epoxidase in the xanthophyll
cycle and as an antioxidant in the detoxification of
reactive oxygen species. Because AsA is the major
reductant in plants, DHAR serves to regulate their redox
state. It has been suggested that a significant portion
of DHAR activity is plastidic, acting to reduce the
large amounts of ascorbate oxidized during hydrogen
peroxide scavenging by ascorbate peroxidase. DHAR
contains a conserved cysteine in its active site and in
addition to its reductase activity, shows thiol
transferase activity similar to glutaredoxins.
Length = 121
Score = 30.1 bits (68), Expect = 1.9
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 119 YMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRPSYMESLTPA 173
++ G++ + +D+ +AP L+ L Y G ++ +S + + KY E +FSR S+ ++ P
Sbjct: 52 FIAGEKITAVDLSLAPKLYHLRVALGHYKGWSVPESLTAVHKYMELLFSRESFKKTKAPD 111
Query: 174 EKIM 177
E I+
Sbjct: 112 EMII 115
>gnl|CDD|130018 TIGR00943, 2a6301s02, monovalent cation:proton antiporter. This
family of proteins constists of bacterial multicomponent
K+:H+ and Na+:H+ antiporters. The best characterized
systems are the PhaABCDEFG system of Rhizobium meliloti
which functions in pH adaptation and as a K+ efflux
system and the MnhABCDEFG system of Staphylococcus
aureus which functions as a Na+:H+ antiporter.This
family is specific for the phaB and mnhB proteins
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 107
Score = 29.7 bits (67), Expect = 2.2
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 676 ILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGI-----GNPFFTTDT 729
+L S +I ++ + + +PL+ + + G ++ A G+ G PF T+ T
Sbjct: 17 LLTASSLILITIA--FGIETVRKILPLDPKRLIGIGLLLAIATGVGSWFLGKPFLTSVT 73
>gnl|CDD|239349 cd03051, GST_N_GTT2_like, GST_N family, Saccharomyces cerevisiae
GTT2-like subfamily; composed of predominantly
uncharacterized proteins with similarity to the S.
cerevisiae GST protein, GTT2. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GTT2, a
homodimer, exhibits GST activity with standard
substrates. Strains with deleted GTT2 genes are viable
but exhibit increased sensitivity to heat shock.
Length = 74
Score = 28.8 bits (65), Expect = 2.2
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 2 DFEIRDIDLF---NKPDNIFRMNPYGQVPILVERD-LILYESNIINEYID 47
D + +DL + NP G VP+L D ++ ES I Y++
Sbjct: 25 DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74
>gnl|CDD|233585 TIGR01818, ntrC, nitrogen regulation protein NR(I). This model
represents NtrC, a DNA-binding response regulator that
is phosphorylated by NtrB and interacts with sigma-54.
NtrC usually controls the expression of glutamine
synthase, GlnA, and may be called GlnL, GlnG, etc
[Central intermediary metabolism, Nitrogen metabolism,
Regulatory functions, DNA interactions, Signal
transduction, Two-component systems].
Length = 463
Score = 31.6 bits (72), Expect = 2.4
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 923 NIIYVSIPPLTKERREEIVKLIKNI----TEETKISIRKIRRDSNENLKKL 969
N+I + +PPL +ERRE+I +L ++ E + + + ++ E LK+L
Sbjct: 298 NVIRIHLPPL-RERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347
>gnl|CDD|198294 cd03185, GST_C_Tau, C-terminal, alpha helical domain of Class Tau
Glutathione S-transferases. Glutathione S-transferase
(GST) C-terminal domain family, Class Tau subfamily;
GSTs are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. The plant-specific class Tau GST
subfamily has undergone extensive gene duplication. The
Arabidopsis and Oryza genomes contain 28 and 40 Tau
GSTs, respectively. They are primarily responsible for
herbicide detoxification together with class Phi GSTs,
showing class specificity in substrate preference. Tau
enzymes are highly efficient in detoxifying
diphenylether and aryloxyphenoxypropionate herbicides.
In addition, Tau GSTs play important roles in
intracellular signalling, biosynthesis of anthocyanin,
responses to soil stresses and responses to auxin and
cytokinin hormones.
Length = 127
Score = 29.8 bits (68), Expect = 2.7
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 97 KRAREEIRDRLITLAPLFLKNK-YMLGDEFSMLDVVIAPLL-WRLDY---YGINL-SKSA 150
++A EE + L L K + GD LD+ + L W G+ L +
Sbjct: 34 EKAVEEALEALKVLEEELKGGKPFFGGDTIGYLDIALGSFLGWFKAIEEVGGVKLLDEEK 93
Query: 151 SP-LIKYAERIFSRPSYMESLTPAEKIMQ 178
P L +AER R + E L +K+++
Sbjct: 94 FPLLAAWAERFLEREAVKEVLPDRDKLVE 122
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 31.6 bits (72), Expect = 2.9
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 4/135 (2%)
Query: 831 DIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSH 890
+ ++ ++LKE + +R +A + N +K L + +
Sbjct: 713 VDAEFVDEEAEKAFELLKEIIVSIRNLKAESNIPPNAPLKV---LLIYTEAETAERLKLN 769
Query: 891 TISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEE 950
+ I+ + E + + G I + + L + +E+ +L K + +E
Sbjct: 770 AVDIKGAINFSEVEVVIEKPEVTEAVVELVPGFEIIIPVKGL-INKAKELARLQKQLDKE 828
Query: 951 TKISIRKIRRDSNEN 965
K IR + NE
Sbjct: 829 KKEVIRIEGKLENEG 843
>gnl|CDD|223351 COG0274, DeoC, Deoxyribose-phosphate aldolase [Nucleotide transport
and metabolism].
Length = 228
Score = 30.7 bits (70), Expect = 3.2
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 698 SYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 750
SY+PL A + L+ VV IG P T A++AAE + I A ++D
Sbjct: 46 SYVPL-AKEALKGSTVVRVCTVIGFPLGANTT--AVKAAEAREAIENGADEID 95
>gnl|CDD|233112 TIGR00746, arcC, carbamate kinase. In most species, carbamate
kinase works in arginine catabolism and consumes
carbamoyl phosphate to convert ADP into ATP. In the
pathway in Pyrococcus furiosus, the enzyme acts instead
to generate carbamoyl phosphate.The seed alignment for
this model includes experimentally confirmed examples
from a set of phylogenetically distinct species. In a
neighbor-joining tree constructed from an alignment of
candidate carbamate kinases and several acetylglutamate
kinases, the latter group forms a clear outgroup which
roots the tree of carbamate kinase-like proteins. This
analysis suggests that in E. coli, the ArcC paralog YqeA
may be a second isozyme, while the paralog YahI branches
as an outlier and is less likely to be an authentic
carbamate kinase. The homolog from Mycoplasma pneumoniae
likewise branches outside the set containing known
carbamate kinases and also scores below the trusted
cutoff [Energy metabolism, Amino acids and amines].
Length = 309
Score = 30.9 bits (70), Expect = 3.3
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 704 AIKYL-EEGKVVIFAGGIGNP-------------FFTTDTTAALRAAEIKAEIILKATKV 749
IK L E G +VI +GG G P D + L A E+ A+I++ T V
Sbjct: 173 TIKTLVENGVIVICSGGGGVPVVREGAELKGVEAVIDKDLASELLAEEVNADILMILTDV 232
Query: 750 DGIY 753
D +Y
Sbjct: 233 DAVY 236
>gnl|CDD|237312 PRK13236, PRK13236, nitrogenase reductase; Reviewed.
Length = 296
Score = 30.8 bits (69), Expect = 3.3
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 470 KNNEFIKFSKKIA--KLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKI 525
+ NE+ +KKI +T TPI +++L L I+ +L DE E+I + E K+
Sbjct: 239 QGNEYRALAKKIINNDNLTIPTPIEMEELEELLIEFGILESDENHAEIIGKPAEAAKV 296
>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional.
Length = 266
Score = 30.6 bits (70), Expect = 3.4
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTA 786
D +A+ A +KA++++ + +DG+Y+ +P A + ++T I++++ + A
Sbjct: 157 DRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTE---ITEEILALAGGA 212
>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and
metabolism].
Length = 369
Score = 31.0 bits (71), Expect = 3.6
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIM 782
DT +AL A + A++++ + +DG+Y+++P A K I E I+ ++E M
Sbjct: 152 DTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDA---KLIPEVEEITPEIEAM 203
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 31.3 bits (71), Expect = 3.7
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 40/209 (19%)
Query: 809 KRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLD-NI 867
K + +GKN YE ++ D N + K+ N I ILKEN K + + +L +
Sbjct: 770 KDLPDGKN----TYEEFLQYK-DTILNKENKISNDINILKENKKNNQDLLNSYNILIQKL 824
Query: 868 QVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYV 927
+ ++ +L ++ ++++ EKE NE N ++ I+
Sbjct: 825 EAHTEKNDEELKQLLQKFPTEDENLNLKELEKEF--------NENNQIVDNIIK------ 870
Query: 928 SIPPLTKERREEIVKLIKNITEETKISIRKIRRDSN-ENLKKLLKNKI-----LSVDNEY 981
+I + KNI ++I R +SN + ++ LL NKI L +
Sbjct: 871 -----------DIENMNKNINIIKTLNIAINRSNSNKQLVEHLLNNKIDLKNKLEQHMKI 919
Query: 982 RAQYDIQKLTDKFILEINQLLINKEKEIL 1010
+I + +K L N +NKEKE +
Sbjct: 920 INTDNIIQKNEKLNLLNN---LNKEKEKI 945
Score = 29.8 bits (67), Expect = 9.6
Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 23/206 (11%)
Query: 825 YIMIISDIKKNTKQKMLNTIKILKEN----------------LKKVRTGRANIGMLDNIQ 868
YI+ + N K++ +K +K N K V T + +
Sbjct: 2361 YIIKTKEKINNLKEEFSKLLKNIKRNNTLCNNNNIKDFISNIGKSVETIKQRFSSNLPEK 2420
Query: 869 VKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVS 928
K H+ L +I NI + ++ I + I+ N + I
Sbjct: 2421 EKLHQIEENLNEIKNIM----NETKRISNVDAFTNKILQDIDNEKNKENNNMNAEKIDDL 2476
Query: 929 IPPLTKERREEIVKL--IKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYD 986
I +T + +L I + K ++ + N L + N S N
Sbjct: 2477 IENVTSHNEKIKSELLIINDALRRVKEKKDEMNKLFNS-LTENNNNNNNSAKNIVDNSTY 2535
Query: 987 IQKLTDKFILEINQLLINKEKEILTL 1012
I + + ++N+LL + EI L
Sbjct: 2536 IINELESHVSKLNELLSYIDNEIKEL 2561
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 31.0 bits (71), Expect = 3.7
Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 32/179 (17%)
Query: 402 LAPIMECKKALIEANGKLSKAEEILR--IKLGKKILNISNRNAKDGVIAIYISEKVGSLV 459
L E ++ I + + AEE ++ I+ ++IL ++ K I + K L
Sbjct: 738 LEKWPEPDESKI--DEEAELAEEYVKRLIEDIREILKVAKIKPKKVYIYVAPDWKYEVLE 795
Query: 460 EINCETDF------VAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCK 513
D + K+ E K K++AKL + +K L E K
Sbjct: 796 IAAENGDVKEAIKELMKDEELRKHGKEVAKLAQK------------IVKEVLKLDKEVRK 843
Query: 514 ELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKP 572
++ I E ++ + + + ++GV VE G ++ K +KP
Sbjct: 844 LILKNIDE------EEVLEEAKDFLE----KELGVEVEIYGADDPGKKKKKKKALPLKP 892
>gnl|CDD|198292 cd03183, GST_C_Theta, C-terminal, alpha helical domain of Class
Theta Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, Class
Theta subfamily; composed of eukaryotic class Theta GSTs
and bacterial dichloromethane (DCM) dehalogenase. GSTs
are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. Mammalian class Theta GSTs show poor
GSH conjugating activity towards the standard
substrates, CDNB and ethacrynic acid, differentiating
them from other mammalian GSTs. GSTT1-1 shows similar
cataytic activity as bacterial DCM dehalogenase,
catalyzing the GSH-dependent hydrolytic dehalogenation
of dihalomethanes. This is an essential process in
methylotrophic bacteria to enable them to use
chloromethane and DCM as sole carbon and energy sources.
The presence of polymorphisms in human GSTT1-1 and its
relationship to the onset of diseases including cancer
is the subject of many studies. Human GSTT2-2 exhibits a
highly specific sulfatase activity, catalyzing the
cleavage of sulfate ions from aralkyl sufate esters, but
not from the aryl or alkyl sulfate esters.
Length = 126
Score = 29.5 bits (67), Expect = 3.7
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 KRAREEIRDRLITLAPLFLKNK-YMLGDEFSMLDVV 131
K+A E + + L L FLK+K ++ GDE S+ D+
Sbjct: 44 KKAEENLEESLDLLENKFLKDKPFLAGDEISIADLS 79
>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase. Bacterial ProB proteins hit
the full length of this model, but the ProB-like domain
of delta 1-pyrroline-5-carboxylate synthetase does not
hit the C-terminal 100 residues of this model. The noise
cutoff is set low enough to hit delta
1-pyrroline-5-carboxylate synthetase and other partial
matches to this family [Amino acid biosynthesis,
Glutamate family].
Length = 363
Score = 30.7 bits (70), Expect = 4.0
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 759
DT +AL A + A++++ T VDG+Y++DP
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRT 177
>gnl|CDD|240438 PTZ00489, PTZ00489, glutamate 5-kinase; Provisional.
Length = 264
Score = 30.0 bits (67), Expect = 5.5
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 724 FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYK---KITFDEVISK 777
F D +AL A KA++++ + +DG Y +P A I +++ D+++++
Sbjct: 146 FGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAE 202
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 30.4 bits (69), Expect = 6.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 937 REEIVKLIKNITEETKISIRKIRRDSN 963
R E+ KL + +E K ++R++R+D+
Sbjct: 748 RAELNKLKAQLKKERKGAMRELRKDNR 774
>gnl|CDD|212567 cd11694, DHR2_DOCK_D, Dock Homology Region 2, a GEF domain, of
Class D Dedicator of Cytokinesis proteins. DOCK
proteins are atypical guanine nucleotide exchange
factors (GEFs) that lack the conventional Dbl homology
(DH) domain. As GEFs, they activate small GTPases by
exchanging bound GDP for free GTP. They are divided into
four classes (A-D) based on sequence similarity and
domain architecture; class D, also called the Zizimin
subfamily, includes Dock9, 10 and 11. Class D Docks are
specific GEFs for Cdc42. Dock9 plays important roles in
spine formation and dendritic growth. Dock10 and Dock11
are preferentially expressed in lymphocytes. All DOCKs
contain two homology domains: the DHR-1 (Dock homology
region-1), also called CZH1 (CED-5, Dock180, and
MBC-zizimin homology 1), and DHR-2 (also called CZH2 or
Docker). The DHR-1 domain binds
phosphatidylinositol-3,4,5-triphosphate. This alignment
model represents the DHR-2 domain of class D DOCKs,
which contains the catalytic GEF activity for Cdc42.
Class D DOCKs also contain a Pleckstrin homology (PH)
domain at the N-terminus.
Length = 376
Score = 30.0 bits (68), Expect = 6.3
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 394 VGELRSKTLAPIMECKK---ALIEANGKLSKAEE-ILRI-KLGKKILNISNRNA------ 442
+GEL K + PI E ++ L + L +A E ++ + + GK++L R A
Sbjct: 64 LGEL-YKLIIPIYEKRRDFEQLADCYRTLHRAYEKVVEVMESGKRLLGTYYRVAFYGQAF 122
Query: 443 ---KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNL 499
+DG IY KV SL EI+ + + KF + KLI ++ +N L+
Sbjct: 123 FEEEDGKEYIYKEPKVTSLSEIS--ERLLKLYGD--KFGSENVKLIQDSGKVNPKDLDPK 178
Query: 500 KIKNNLLTV----DEKCKELISRIGE---NIKIRRFKLFKT 533
+ V DE KEL R E N IRRF +F+T
Sbjct: 179 YAYIQVTHVTPYFDE--KELEDRKTEFERNHNIRRF-VFET 216
>gnl|CDD|223622 COG0548, ArgB, Acetylglutamate kinase [Amino acid transport and
metabolism].
Length = 265
Score = 29.1 bits (66), Expect = 9.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAII 765
DT A AA +KAE ++ T V G+ + + L + +
Sbjct: 165 DTAAGALAAALKAEKLILLTDVPGVLDDKGDPSLISEL 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.381
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 52,549,235
Number of extensions: 5520879
Number of successful extensions: 6554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6457
Number of HSP's successfully gapped: 273
Length of query: 1012
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 905
Effective length of database: 6,191,724
Effective search space: 5603510220
Effective search space used: 5603510220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.3 bits)