BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3753
(928 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GOY|A Chain A, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|B Chain B, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|C Chain C, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|D Chain D, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|E Chain E, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|F Chain F, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|G Chain G, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|H Chain H, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
Length = 275
Score = 174 bits (442), Expect = 2e-43, Method: Composition-based stats.
Identities = 90/229 (39%), Positives = 131/229 (57%), Gaps = 9/229 (3%)
Query: 697 KTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLN 756
K+ D L + ++ S AED+VL D+ + N ++ +F+L+TGRLH ET ++
Sbjct: 40 KSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFID 99
Query: 757 KIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKS 816
++ Y I V P + + + G+ +FY +CC IRK++PLK+ L G ++
Sbjct: 100 QVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGH--GECCGIRKIEPLKRKLAGVRA 157
Query: 817 WITGQRRTQSI-TRSNLVLKEKD----IIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNT 871
W TGQRR QS TRS + + E D + KFNPL + +++W YI +PYN+
Sbjct: 158 WATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNS 217
Query: 872 LYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHVLDGKLI 920
L++ GY+SIGCEPCTRP + R GRWWWE + KECGLH G LI
Sbjct: 218 LHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHA--GNLI 264
>pdb|1ZJ8|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ8|B Chain B, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ9|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ9|B Chain B, Structure Of Mycobacterium Tuberculosis Nira Protein
Length = 566
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/490 (25%), Positives = 224/490 (45%), Gaps = 58/490 (11%)
Query: 47 LQRYAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILE 106
L+ +M+R+ G LS+ +R L I+ ++ R+ + RQN+Q++WI+++ P+I
Sbjct: 100 LEAKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWR 159
Query: 107 NLASVEMHAIQTSGNCIRNITSDELSGVSFDEIID-TRPYAEILRQWSTFHPEFAYLPRK 165
L V + + G+C R + L+G S DE++D T EI+R++ P+FA LPRK
Sbjct: 160 RLDDVGLQTTEACGDCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRY-IGKPDFADLPRK 218
Query: 166 FKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKH 225
+K +ISG Q+ A ++D+ + + G + VGGG+ P++ Q + ++P
Sbjct: 219 YKTAISGLQD--VAHEINDVAFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGE 276
Query: 226 ILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEE 285
+ A+ ++ YG R K+R+K L+K GI F+ L E
Sbjct: 277 VPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFR--------------EVLETEY 322
Query: 286 LKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRIN 345
LKR P E KH + H ++ K NG L +
Sbjct: 323 LKR-------------PLIDGPAPEPVKHPID-----HVGVQRLK-NG-------LNAVG 356
Query: 346 MAP--GDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSE 403
+AP G ++ + +A+L +R T Q +V+ D+ L +L + GL
Sbjct: 357 VAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQS 416
Query: 404 SNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSK-----DDQRNIGKISLNISGCI 458
+ +++ C G +FC L+ ++ A++++ + + Q ++ I++NI+GC
Sbjct: 417 RPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDV-PITVNINGCP 475
Query: 459 NSCXXXXXX-----XXXXXXXXXXXXEYFQILIGGSQGNKLNFG-KIIGPSFSADQVPDI 512
NSC E FQ+ +GG G FG K+ ++D++ D
Sbjct: 476 NSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDY 535
Query: 513 INRILKVYLR 522
I+R+++ +++
Sbjct: 536 IDRVVRNFVK 545
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 109/421 (25%), Positives = 199/421 (47%), Gaps = 52/421 (12%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDR-NYGHFTTRQNIQFNWIKLKESPDILENLAS 110
+M+R+ +P G+ +S Q R L+ + +KY + TTRQN Q + L + P+IL+ LA
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAE 194
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQW----STFHPEFAYLPRKF 166
V + ++Q+ G+ +RN + L+G+ +EI+DTRPY +L Q+ S +P + LPRK+
Sbjct: 195 VGLTSLQSGGDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKW 254
Query: 167 KISISGSQEDRAAIFVHDIG-LRAIKNKLGKIGFCVIVGGGMGRTPIIGQI-ICKFLPWK 224
+ GS + ++D+ + A K+ G+ GF ++VGG I + ++P
Sbjct: 255 NPCVVGSHDLYEHPHINDLAYMPATKD--GRFGFNLLVGGFFSAKRCDEAIPLDAWVPAD 312
Query: 225 HILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284
++ AIL + G R N K R+ L+ +G+E F+ +V + + +
Sbjct: 313 DVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKR----------MPQQ 362
Query: 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRI 344
+L+R P++ + K++E + K GY + L
Sbjct: 363 QLERAS-----------PEDLV--------QKQWERRDYLGVHPQKQEGYSFIGL----- 398
Query: 345 NMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSES 404
++ G + ++ M+ +A LAD Y E+R+T QNI++ ++ + L E S
Sbjct: 399 HIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD 458
Query: 405 NINLLTDIICCPGGDFCSLA----NTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINS 460
L+ ++ C G FC A +SL I + + + S + ++ +GC N+
Sbjct: 459 PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTK-----PVRMHWTGCPNT 513
Query: 461 C 461
C
Sbjct: 514 C 514
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/421 (25%), Positives = 199/421 (47%), Gaps = 52/421 (12%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDR-NYGHFTTRQNIQFNWIKLKESPDILENLAS 110
+M+R+ +P G+ +S Q R L+ + +KY + TTRQN Q + L + P+IL+ LA
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAE 194
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQW----STFHPEFAYLPRKF 166
V + ++Q+ + +RN + L+G+ +EI+DTRPY +L Q+ S +P + LPRK+
Sbjct: 195 VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKW 254
Query: 167 KISISGSQEDRAAIFVHDIG-LRAIKNKLGKIGFCVIVGGGMGRTPIIGQI-ICKFLPWK 224
K + GS + ++D+ + A K+ G+ GF ++VGG I + ++P
Sbjct: 255 KPCVVGSHDLYEHPHINDLAYMPATKD--GRFGFNLLVGGFFSAKRCDEAIPLDAWVPAD 312
Query: 225 HILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284
++ AIL + G R N K R+ L+ +G+E F+ +V + + +
Sbjct: 313 DVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKR----------MPQQ 362
Query: 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRI 344
+L+R P++ + K++E + K GY + L
Sbjct: 363 QLERAS-----------PEDLV--------QKQWERRDYLGVHPQKQEGYSFIGL----- 398
Query: 345 NMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSES 404
++ G + ++ M+ +A LAD Y E+R+T QNI++ ++ + L E S
Sbjct: 399 HIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD 458
Query: 405 NINLLTDIICCPGGDFCSLA----NTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINS 460
L+ ++ C G FC A +SL I + + + S + ++ +GC N+
Sbjct: 459 PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTK-----PVRMHWTGCPNT 513
Query: 461 C 461
C
Sbjct: 514 C 514
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 198/421 (47%), Gaps = 52/421 (12%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDR-NYGHFTTRQNIQFNWIKLKESPDILENLAS 110
+M+R+ +P G+ +S Q R L+ + +KY + TTRQN Q + L + P+IL+ LA
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAE 194
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQW----STFHPEFAYLPRKF 166
V + ++Q+ + +RN + L+G+ +EI+DTRPY +L Q+ S +P + LPRK+
Sbjct: 195 VGLTSLQSGKDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKW 254
Query: 167 KISISGSQEDRAAIFVHDIG-LRAIKNKLGKIGFCVIVGGGMGRTPIIGQI-ICKFLPWK 224
+ GS + ++D+ + A K+ G+ GF ++VGG I + ++P
Sbjct: 255 NPCVVGSHDLYEHPHINDLAYMPATKD--GRFGFNLLVGGFFSAKRCDEAIPLDAWVPAD 312
Query: 225 HILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284
++ AIL + G R N K R+ L+ +G+E F+ +V + + +
Sbjct: 313 DVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKR----------MPQQ 362
Query: 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRI 344
+L+R P++ + K++E + K GY + L
Sbjct: 363 QLERAS-----------PEDLV--------QKQWERRDYLGVHPQKQEGYSFIGL----- 398
Query: 345 NMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSES 404
++ G + ++ M+ +A LAD Y E+R+T QNI++ ++ + L E S
Sbjct: 399 HIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD 458
Query: 405 NINLLTDIICCPGGDFCSLA----NTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINS 460
L+ ++ C G FC A +SL I + + + S + ++ +GC N+
Sbjct: 459 PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTK-----PVRMHWTGCPNT 513
Query: 461 C 461
C
Sbjct: 514 C 514
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 198/421 (47%), Gaps = 52/421 (12%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDR-NYGHFTTRQNIQFNWIKLKESPDILENLAS 110
+M+R+ +P G+ +S Q R L+ + +KY + TTRQN Q + L + P+IL+ LA
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAE 194
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQW----STFHPEFAYLPRKF 166
V + ++Q+ + +RN + L+G+ +EI+DTRPY +L Q+ S +P + LPRK+
Sbjct: 195 VGLTSLQSGEDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKW 254
Query: 167 KISISGSQEDRAAIFVHDIG-LRAIKNKLGKIGFCVIVGGGMGRTPIIGQI-ICKFLPWK 224
+ GS + ++D+ + A K+ G+ GF ++VGG I + ++P
Sbjct: 255 NPCVVGSHDLYEHPHINDLAYMPATKD--GRFGFNLLVGGFFSAKRCDEAIPLDAWVPAD 312
Query: 225 HILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284
++ AIL + G R N K R+ L+ +G+E F+ +V + + +
Sbjct: 313 DVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKR----------MPQQ 362
Query: 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRI 344
+L+R P++ + K++E + K GY + L
Sbjct: 363 QLERAS-----------PEDLV--------QKQWERRDYLGVHPQKQEGYSFIGL----- 398
Query: 345 NMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSES 404
++ G + ++ M+ +A LAD Y E+R+T QNI++ ++ + L E S
Sbjct: 399 HIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD 458
Query: 405 NINLLTDIICCPGGDFCSLA----NTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINS 460
L+ ++ C G FC A +SL I + + + S + ++ +GC N+
Sbjct: 459 PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTK-----PVRMHWTGCPNT 513
Query: 461 C 461
C
Sbjct: 514 C 514
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 198/421 (47%), Gaps = 52/421 (12%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDR-NYGHFTTRQNIQFNWIKLKESPDILENLAS 110
+M+R+ +P G+ +S Q R L+ + +KY + TTRQN Q + L + P+IL+ LA
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAE 194
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQW----STFHPEFAYLPRKF 166
V + ++Q+ + +RN + L+G+ +EI+DTRPY +L Q+ S +P + LPRK+
Sbjct: 195 VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKW 254
Query: 167 KISISGSQEDRAAIFVHDIG-LRAIKNKLGKIGFCVIVGGGMGRTPIIGQI-ICKFLPWK 224
+ GS + ++D+ + A K+ G+ GF ++VGG I + ++P
Sbjct: 255 NPCVVGSHDLYEHPHINDLAYMPATKD--GRFGFNLLVGGFFSAKRCDEAIPLDAWVPAD 312
Query: 225 HILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284
++ AIL + G R N K R+ L+ +G+E F+ +V + + +
Sbjct: 313 DVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKR----------MPQQ 362
Query: 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRI 344
+L+R P++ + K++E + K GY + L
Sbjct: 363 QLERAS-----------PEDLV--------QKQWERRDYLGVHPQKQEGYSFIGL----- 398
Query: 345 NMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSES 404
++ G + ++ M+ +A LAD Y E+R+T QNI++ ++ + L E S
Sbjct: 399 HIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD 458
Query: 405 NINLLTDIICCPGGDFCSLA----NTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINS 460
L+ ++ C G FC A +SL I + + + S + ++ +GC N+
Sbjct: 459 PPILMKGLVACTGNQFCGKAIIETKARSLKITEEVQRQVSLTK-----PVRMHWTGCPNT 513
Query: 461 C 461
C
Sbjct: 514 C 514
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/421 (25%), Positives = 198/421 (47%), Gaps = 52/421 (12%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDR-NYGHFTTRQNIQFNWIKLKESPDILENLAS 110
+M+R+ +P G+ +S Q R L+ + +KY + TTRQN Q + L + P+IL+ LA
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAE 194
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQW----STFHPEFAYLPRKF 166
V + ++Q+ + +RN + L+G+ +EI+DTRPY +L Q+ S +P + LPRK+
Sbjct: 195 VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKW 254
Query: 167 KISISGSQEDRAAIFVHDIG-LRAIKNKLGKIGFCVIVGGGMGRTPIIGQI-ICKFLPWK 224
+ GS + ++D+ + A K+ G+ GF ++VGG I + ++P
Sbjct: 255 NPCVVGSHDLYEHPHINDLAYMPATKD--GRFGFNLLVGGFFSAKRCDEAIPLDAWVPAD 312
Query: 225 HILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284
++ AIL + G R N K R+ L+ +G+E F+ +V + + +
Sbjct: 313 DVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKR----------MPQQ 362
Query: 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRI 344
+L+R P++ + K++E + K GY + L
Sbjct: 363 QLERAS-----------PEDLV--------QKQWERRDYLGVHPQKQEGYSFIGL----- 398
Query: 345 NMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSES 404
++ G + ++ M+ +A LAD Y E+R+T QNI++ ++ + L E S
Sbjct: 399 HIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD 458
Query: 405 NINLLTDIICCPGGDFCSLA----NTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINS 460
L+ ++ C G FC A +SL I + + + S + ++ +GC N+
Sbjct: 459 PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTK-----PVRMHWTGCPNT 513
Query: 461 C 461
C
Sbjct: 514 C 514
>pdb|3B0H|A Chain A, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
pdb|3B0H|B Chain B, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
Length = 588
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 222/483 (45%), Gaps = 58/483 (12%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDRN-YGHFTTRQNIQFNWIKLKESPDILENLAS 110
+M+R+ +P G+ +S Q R L+ + +KY ++ TTRQN Q + L + P+IL+ L
Sbjct: 132 FMMRLKLPNGVTTSSQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLDE 191
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTF----HPEFAYLPRKF 166
V + ++Q+ + +RN + L+G+ EI+DTRPY +L Q+ T +P LPRK+
Sbjct: 192 VGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSQYVTANFRGNPAVTNLPRKW 251
Query: 167 KISISGSQEDRAAIFVHDIG-LRAIKNKLGKIGFCVIVGGGMGRTPIIGQI-ICKFLPWK 224
+ + GS + ++D+ + A K+ G+ GF ++VGG + + ++P
Sbjct: 252 NVCVIGSHDLYEHPQINDLAYMPATKD--GRFGFNLLVGGFFSPKRCAEAVPLDAWVPAD 309
Query: 225 HILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284
++ +AIL Y G R N K+R+ L+ +G+E F+ +V
Sbjct: 310 DVVPVCKAILEAYRDLGTRGNRQKTRMMWLVDELGVEGFRAEV----------------- 352
Query: 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRI 344
+KR+ P+ K +++ L +K +E+ VH K GY V L
Sbjct: 353 -VKRM------PQQKLDRESTEDLVQKQWERREYLG-VH----PQKQEGYSFVGL----- 395
Query: 345 NMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTE-IKQYGLSE 403
++ G + ++ M+ +A LAD Y ELR+T QNI++ +V + L E + + S
Sbjct: 396 HIPVGRVQADDMDELARLADEYGSGELRLTVEQNIIIPNVKNSKIEALLNEPLLKNRFST 455
Query: 404 SNINLLTDIICCPGGDFCSLA----NTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCIN 459
L+ +++ C G FC A +S+ I + + S + ++ +GC N
Sbjct: 456 DPPILMKNLVACTGNQFCGKAIIETKARSMKITEEVQLLVSITQ-----PVRMHWTGCPN 510
Query: 460 SCXXXXXX----XXXXXXXXXXXXEYFQILIGGSQGNKLNFGKIIGPSFSA-DQVPDIIN 514
SC E + +GG G+ + G + S D VP I++
Sbjct: 511 SCAQVQVADIGFMGCLTRKEGKTVEGADVYLGGRIGSDSHLGDVYKKSVPCEDLVPIIVD 570
Query: 515 RIL 517
++
Sbjct: 571 LLV 573
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 199/423 (47%), Gaps = 55/423 (13%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDRN-YGHFTTRQNIQFNWIKLKESPDILENLAS 110
+M+R+ +P G+ +S+Q R L+ + KKY ++ TTRQN Q + L + P+I++ L S
Sbjct: 152 FMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLES 211
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHP----EFAYLPRKF 166
V + ++Q+ + +RN + L+G+ EI+DTRP+ ++ Q+ T + LPRK+
Sbjct: 212 VGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKW 271
Query: 167 KISISGSQEDRAAIFVHDIG-LRAIKNKLGKIGFCVIVGGGMGRTPIIGQI-ICKFLPWK 224
+ GS + ++D+ + A KN GK GF ++VGG I + ++ +
Sbjct: 272 NPCVIGSHDLYEHPHINDLAYMPATKN--GKFGFNLLVGGFFSIKRCEEAIPLDAWVSAE 329
Query: 225 HILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284
++ +A+L + G R N K R+ L+ +G+E F+ +V K P +
Sbjct: 330 DVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVE------KRMPEQV--- 380
Query: 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRI 344
L+R + K++E + K G LS +
Sbjct: 381 -LERASSEELV-------------------QKDWERREYLGVHPQKQQG-----LSFVGL 415
Query: 345 NMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTE--IKQYGLS 402
++ G + +++M +A +AD Y ELR+T QNI++ +V + +L E +K+
Sbjct: 416 HIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSP 475
Query: 403 ESNINLLTDIICCPGGDFCSLA----NTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCI 458
E I L+ ++ C G FC A ++L + + + + S + ++ +GC
Sbjct: 476 EPPI-LMKGLVACTGSQFCGQAIIETKARALKVTEEVQRLVSV-----TRPVRMHWTGCP 529
Query: 459 NSC 461
NSC
Sbjct: 530 NSC 532
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 48 QRYAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILEN 107
Q+ + + IP G L + +M L+ IA Y T QNI ++ + +L
Sbjct: 407 QQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNE 466
Query: 108 LASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYA-----EILRQWSTFHPEFAYL 162
E ++ + ++ + + S II+T+ A E+ R S P
Sbjct: 467 PLLKERYSPEPP-ILMKGLVACTGSQFCGQAIIETKARALKVTEEVQRLVSVTRP----- 520
Query: 163 PRKFKISISGSQEDRAAIFVHDIGLRA--IKNKLGKI--GFCVIVGGGMGRTPIIGQIIC 218
++ +G + V DIG +++ GK G V VGG +G +G I
Sbjct: 521 ---VRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYK 577
Query: 219 KFLPWKHILTYIEAILRIYNQYG 241
K +P K ++ + IL NQ+G
Sbjct: 578 KAVPCKDLVPVVAEIL--INQFG 598
>pdb|2OQ2|A Chain A, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|B Chain B, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|C Chain C, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|D Chain D, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
Length = 261
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 797 KCCYIRKVKPLKKAL--IGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWL 854
K Y+ KV+P +A + + TG+R++Q RS L + E D + NGI+K NPL NW
Sbjct: 133 KYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDEL-NGILKINPLINWT 191
Query: 855 EKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLH 913
+ + YI+ NVPYN L D GY SIG T+P ++G+D R+GR W+ ECG+H
Sbjct: 192 FEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGR--WKGKAKTECGIH 248
>pdb|4G39|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 103/449 (22%), Positives = 182/449 (40%), Gaps = 78/449 (17%)
Query: 49 RYAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYG--HFTTRQNIQFNWIKLKESPDILE 106
R+A +LR +P G++++KQ + + A + + YG T RQ QF+ I K + +
Sbjct: 77 RHAMLLRCRLPGGVITTKQWQAIDKFAGE-NTIYGSIRLTNRQTFQFHGILKKNVKPVHQ 135
Query: 107 NLASVEMHAIQTSGN------CIRNITSDELSGVSFD--------EIIDTRPYAEI---L 149
L SV + A+ T+ + C N +L +++ + TR YAEI
Sbjct: 136 MLHSVGLDALATANDMNSNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQ 195
Query: 150 RQWSTFHPEF----AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGG 205
+ +T E YLPRKFK ++ ++ + +D+ AI +GF ++VGG
Sbjct: 196 EKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGG 255
Query: 206 GM----GRTPIIGQIICKF--LPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIG 259
G+ G + +F LP +H L EA++ +G R + ++ K L+ +G
Sbjct: 256 GLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVG 315
Query: 260 IENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFE 319
+E F+ +V E IK P ++ Y T + +
Sbjct: 316 VETFKAEV-ERRAGIKFEP----------IRPYEFTGRGDRI------------------ 346
Query: 320 NWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNI 379
WV K N ++ + + RI P + IA + + R+T QN+
Sbjct: 347 GWV----KGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK----GDFRITANQNL 398
Query: 380 VLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKS---LPI----A 432
+++ V + + K+ GL + + + C C LA ++ LP
Sbjct: 399 IIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNI 458
Query: 433 KNIMKYFSKDDQRNIGKISLNISGCINSC 461
N+M D+ I + ++GC N C
Sbjct: 459 DNLMAKHGVSDEH----IVMRVTGCPNGC 483
>pdb|1AOP|A Chain A, Sulfite Reductase Structure At 1.6 Angstrom Resolution
pdb|2AOP|A Chain A, Sulfite Reductase: Reduced With Crii Edta, Siroheme Feii,
[4fe-4s] +1, Phosphate Bound
pdb|2GEP|A Chain A, Sulfite Reductase Hemoprotein, Oxidized, Siroheme Feiii
[4fe-4s] +2, Sulfite Complex
pdb|3AOP|A Chain A, Sulfite Reductase Hemoprotein Photoreduced With Proflavine
Edta, Siroheme Feii,[4fe-4s] +1, Phosphate Bound
pdb|3GEO|A Chain A, Sulfite Reductase Hemoprotein Nitrite Complex
pdb|4AOP|A Chain A, Sulfite Reductase Hemoprotein Partially Photoreduced With
Proflavine Edta, Phosphate Partially Bound
pdb|4GEP|A Chain A, Sulfite Reductase Hemoprotein Cyanide Complex Reduced With
Crii Edta
pdb|5AOP|A Chain A, Sulfite Reductase Structure Reduced With Crii Edta,
5-Coordinate Siroheme, Siroheme Feii, [4fe-4s] +1
pdb|5GEP|A Chain A, Sulfite Reductase Hemoprotein Carbon Monoxide Complex
Reduced With Crii Edta
pdb|6GEP|A Chain A, Sulfite Reductase Hemoprotein Nitric Oxide Complex Reduced
With Proflavine Edta
pdb|7GEP|A Chain A, Sulfite Reductase Hemoprotein In Complex With A Partially
Oxidized Sulfide Species
pdb|8GEP|A Chain A, Sulfite Reductase Hemoprotein Nitrate Complex
Length = 497
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 183/449 (40%), Gaps = 78/449 (17%)
Query: 49 RYAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYG--HFTTRQNIQFNWIKLKESPDILE 106
R+A +LR +P G++++KQ + + A + + YG T RQ QF+ I K + +
Sbjct: 4 RHAMLLRCRLPGGVITTKQWQAIDKFAGE-NTIYGSIRLTNRQTFQFHGILKKNVKPVHQ 62
Query: 107 NLASVEMHAIQTSGNCIRNI--TSDELSG------------VSFDEIIDTRPYAEIL--- 149
L SV + A+ T+ + RN+ TS+ +S + TR YAEI
Sbjct: 63 MLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQ 122
Query: 150 RQWSTFHPEF----AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGG 205
+ +T E YLPRKFK ++ ++ + +D+ AI +GF ++VGG
Sbjct: 123 EKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGG 182
Query: 206 GM----GRTPIIGQIICKF--LPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIG 259
G+ G + +F LP +H L EA++ +G R + ++ K L+ +G
Sbjct: 183 GLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVG 242
Query: 260 IENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFE 319
+E F+ +V E IK P ++ Y T + +
Sbjct: 243 VETFKAEV-ERRAGIKFEP----------IRPYEFTGRGDRI------------------ 273
Query: 320 NWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNI 379
WV K N ++ + + RI P + IA + + R+T QN+
Sbjct: 274 GWV----KGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK----GDFRITANQNL 325
Query: 380 VLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKS---LPI----A 432
+++ V + + K+ GL + + + C C LA ++ LP
Sbjct: 326 IIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNI 385
Query: 433 KNIMKYFSKDDQRNIGKISLNISGCINSC 461
N+M D+ I + ++GC N C
Sbjct: 386 DNLMAKHGVSDEH----IVMRVTGCPNGC 410
>pdb|4G38|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 183/449 (40%), Gaps = 78/449 (17%)
Query: 49 RYAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYG--HFTTRQNIQFNWIKLKESPDILE 106
R+A +LR +P G++++KQ + + A + + YG T RQ QF+ I K + +
Sbjct: 77 RHAMLLRCRLPGGVITTKQWQAIDKFAGE-NTIYGSIRLTNRQTFQFHGILKKNVKPVHQ 135
Query: 107 NLASVEMHAIQTSGNCIRNI--TSDELSG------------VSFDEIIDTRPYAEIL--- 149
L SV + A+ T+ + RN+ TS+ +S + TR YAEI
Sbjct: 136 MLHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQ 195
Query: 150 RQWSTFHPEF----AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGG 205
+ +T E YLPRKFK ++ ++ + +D+ AI +GF ++VGG
Sbjct: 196 EKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGG 255
Query: 206 GM----GRTPIIGQIICKF--LPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIG 259
G+ G + +F LP +H L EA++ +G R + ++ K L+ +G
Sbjct: 256 GLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVG 315
Query: 260 IENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFE 319
+E F+ +V E IK P ++ Y T + +
Sbjct: 316 VETFKAEV-ERRAGIKFEP----------IRPYEFTGRGDRI------------------ 346
Query: 320 NWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNI 379
WV K N ++ + + RI P + IA + + R+T QN+
Sbjct: 347 GWV----KGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK----GDFRITANQNL 398
Query: 380 VLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKS---LPI----A 432
+++ V + + K+ GL + + + C C LA ++ LP
Sbjct: 399 IIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNI 458
Query: 433 KNIMKYFSKDDQRNIGKISLNISGCINSC 461
N+M D+ I + ++GC N C
Sbjct: 459 DNLMAKHGVSDEH----IVMRVTGCPNGC 483
>pdb|4HTR|A Chain A, N149w Variant Of Sirhp Bound To Sulfite
Length = 507
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 183/449 (40%), Gaps = 78/449 (17%)
Query: 49 RYAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYG--HFTTRQNIQFNWIKLKESPDILE 106
R+A +LR +P G++++KQ + + A + + YG T RQ QF+ I K + +
Sbjct: 14 RHAMLLRCRLPGGVITTKQWQAIDKFAGE-NTIYGSIRLTNRQTFQFHGILKKNVKPVHQ 72
Query: 107 NLASVEMHAIQTSGNCIRNI--TSDELSG------------VSFDEIIDTRPYAEIL--- 149
L SV + A+ T+ + RN+ TS+ +S + TR YAEI
Sbjct: 73 MLHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQ 132
Query: 150 RQWSTFHPEF----AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGG 205
+ +T E YLPRKFK ++ ++ + +D+ AI +GF ++VGG
Sbjct: 133 EKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGG 192
Query: 206 GM----GRTPIIGQIICKF--LPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIG 259
G+ G + +F LP +H L EA++ +G R + ++ K L+ +G
Sbjct: 193 GLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVG 252
Query: 260 IENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFE 319
+E F+ +V E IK P ++ Y T + +
Sbjct: 253 VETFKAEV-ERRAGIKFEP----------IRPYEFTGRGDRI------------------ 283
Query: 320 NWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNI 379
WV K N ++ + + RI P + IA + + R+T QN+
Sbjct: 284 GWV----KGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK----GDFRITANQNL 335
Query: 380 VLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKS---LPI----A 432
+++ V + + K+ GL + + + C C LA ++ LP
Sbjct: 336 IIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNI 395
Query: 433 KNIMKYFSKDDQRNIGKISLNISGCINSC 461
N+M D+ I + ++GC N C
Sbjct: 396 DNLMAKHGVSDEH----IVMRVTGCPNGC 420
>pdb|2O8V|A Chain A, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 252
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 702 ALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLT 761
AL+N+ +Y V +SS + V L+ + DI + +TG L ET ++++
Sbjct: 40 ALDNLPGEY---VLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDK 96
Query: 762 YKYKIKVYYPLNSEV-----NNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKAL--IGN 814
K +KVY S +++ G+ +K I KV+P+ +AL +
Sbjct: 97 LKLNLKVYRATESAAWQEARYGKLWEQGVEGI-------EKYNDINKVEPMNRALKELNA 149
Query: 815 KSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYD 874
++W G RR QS +R+NL + I G+ K P+ +W + I+ Y+ + + Y+ L+D
Sbjct: 150 QTWFAGLRREQSGSRANLPVLA---IQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWD 206
Query: 875 NGYLSIGCEPCTRPTEKG 892
GYLS+G TR E G
Sbjct: 207 EGYLSVGDTHTTRKWEPG 224
>pdb|1SUR|A Chain A, Phospho-Adenylyl-Sulfate Reductase
Length = 215
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 20/187 (10%)
Query: 702 ALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLT 761
AL+N+ +Y V +SS + V L+ + DI + +TG L ET ++++
Sbjct: 39 ALDNLPGEY---VLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDK 95
Query: 762 YKYKIKVYYPLNSEV-----NNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKAL--IGN 814
K +KVY S +++ G+ +K I KV+P+ +AL +
Sbjct: 96 LKLNLKVYRATESAAWQEARYGKLWEQGVEGI-------EKYNDINKVEPMNRALKELNA 148
Query: 815 KSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYD 874
++W G RR QS +R+NL + I G+ K P+ +W + I+ Y+ + + Y+ L+D
Sbjct: 149 QTWFAGLRREQSGSRANLPVLA---IQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWD 205
Query: 875 NGYLSIG 881
GYLS+G
Sbjct: 206 EGYLSVG 212
>pdb|1ZUN|A Chain A, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 325
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 48/126 (38%), Gaps = 27/126 (21%)
Query: 772 LNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITR 829
L + +N GIN F K I K + LK+AL G + G RR + +R
Sbjct: 106 LITHINPDGVAQGINPF---THGSAKHTDIXKTEGLKQALDKHGFDAAFGGARRDEEKSR 162
Query: 830 S-NLVLKEKDIIH---------------NG------IIKFNPLYNWLEKDIWNYINTYNV 867
+ V +D H NG I+ PL NW E DIW YI +
Sbjct: 163 AKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGI 222
Query: 868 PYNTLY 873
P LY
Sbjct: 223 PIVPLY 228
>pdb|2WSI|A Chain A, Crystal Structure Of Yeast Fad Synthetase (Fad1) In
Complex With Fad
Length = 306
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 791 SVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPL 850
SV M K+ P +A++ G R T + ++ D ++ PL
Sbjct: 141 SVNMADAFRDFIKIYPETEAIV------IGIRHTDPFGEALKPIQRTDSNWPDFMRLQPL 194
Query: 851 YNWLEKDIWNYINTYNVPYNTLYDNGYLSIG 881
+W +IW+++ N P LY G+ SIG
Sbjct: 195 LHWDLTNIWSFLLYSNEPICGLYGKGFTSIG 225
>pdb|3FWK|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase
pdb|3G59|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Atp
pdb|3G5A|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|B Chain B, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|C Chain C, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|D Chain D, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|E Chain E, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|F Chain F, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G6K|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|B Chain B, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|C Chain C, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|D Chain D, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|E Chain E, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|F Chain F, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
Length = 308
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 745 GRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGIN---AFYDSVQMRKKCCYI 801
G+ H L L +++ + K + N+I + + + Y+S R KC +
Sbjct: 97 GKFHRFPLTKLPTVFIDHDDTFKT-------LENFIEETSLRYSLSLYESD--RDKCETM 147
Query: 802 RKV-KPLKKALIGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWN 860
+ + + K+ + G R T +++ D + PL +W +IW+
Sbjct: 148 AEAFETFLQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWS 207
Query: 861 YINTYNVPYNTLYDNGYLSIG 881
++ N P LY G+ S+G
Sbjct: 208 FLLYSNEPICELYRYGFTSLG 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,367,217
Number of Sequences: 62578
Number of extensions: 1169672
Number of successful extensions: 3006
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2923
Number of HSP's gapped (non-prelim): 55
length of query: 928
length of database: 14,973,337
effective HSP length: 108
effective length of query: 820
effective length of database: 8,214,913
effective search space: 6736228660
effective search space used: 6736228660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)