Query psy3753
Match_columns 928
No_of_seqs 595 out of 3798
Neff 7.6
Searched_HMMs 46136
Date Sat Aug 17 00:40:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09567 nirA ferredoxin-nitri 100.0 2.3E-88 4.9E-93 802.4 45.3 494 8-545 76-583 (593)
2 PLN02431 ferredoxin--nitrite r 100.0 1.8E-87 4E-92 787.9 44.7 478 7-524 85-585 (587)
3 PRK09566 nirA ferredoxin-nitri 100.0 5E-86 1.1E-90 774.9 45.4 477 6-525 21-510 (513)
4 PLN00178 sulfite reductase 100.0 3.6E-83 7.8E-88 756.3 43.9 467 29-546 79-611 (623)
5 PRK13504 sulfite reductase sub 100.0 4.2E-83 9.2E-88 758.0 41.8 463 28-541 37-557 (569)
6 TIGR02042 sir ferredoxin-sulfi 100.0 8.9E-82 1.9E-86 741.9 42.1 465 29-545 32-571 (577)
7 COG0155 CysI Sulfite reductase 100.0 7.4E-82 1.6E-86 720.7 39.6 493 1-540 1-501 (510)
8 TIGR02041 CysI sulfite reducta 100.0 1.4E-80 3.1E-85 731.4 43.9 465 27-541 22-540 (541)
9 TIGR02435 CobG precorrin-3B sy 100.0 1.3E-71 2.9E-76 633.1 37.7 372 50-475 16-387 (390)
10 KOG0560|consensus 100.0 2.9E-65 6.4E-70 548.4 26.3 471 29-547 107-629 (638)
11 TIGR02057 PAPS_reductase phosp 100.0 7.3E-53 1.6E-57 442.5 20.1 210 697-913 11-226 (226)
12 TIGR00424 APS_reduc 5'-adenyly 100.0 1.2E-52 2.5E-57 476.3 22.4 216 697-915 101-325 (463)
13 PLN02309 5'-adenylylsulfate re 100.0 1.2E-52 2.6E-57 476.2 22.2 217 697-916 96-321 (457)
14 TIGR00434 cysH phosophoadenyly 100.0 2E-51 4.2E-56 431.1 21.6 209 699-914 1-212 (212)
15 PRK02090 phosphoadenosine phos 100.0 5.7E-50 1.2E-54 426.8 20.0 214 696-916 25-239 (241)
16 TIGR02055 APS_reductase thiore 100.0 4.8E-49 1E-53 404.4 19.7 191 719-912 1-191 (191)
17 COG0175 CysH 3'-phosphoadenosi 100.0 1E-47 2.2E-52 412.2 19.2 221 692-916 19-244 (261)
18 KOG0189|consensus 100.0 5.7E-46 1.2E-50 360.7 13.4 213 698-916 33-249 (261)
19 TIGR02064 dsrA sulfite reducta 100.0 3.6E-42 7.8E-47 385.6 17.0 226 333-565 80-386 (402)
20 PRK08557 hypothetical protein; 100.0 6.6E-40 1.4E-44 369.5 19.2 223 689-928 156-413 (417)
21 PRK12563 sulfate adenylyltrans 100.0 2.5E-39 5.4E-44 348.4 18.9 202 690-900 17-294 (312)
22 COG2221 DsrA Dissimilatory sul 100.0 1.1E-38 2.4E-43 336.1 22.0 222 43-272 20-296 (317)
23 TIGR02066 dsrB sulfite reducta 100.0 1.6E-39 3.4E-44 359.5 15.9 229 330-566 26-332 (341)
24 COG2221 DsrA Dissimilatory sul 100.0 8.1E-39 1.8E-43 337.1 17.9 228 325-562 21-305 (317)
25 TIGR02066 dsrB sulfite reducta 100.0 1.9E-38 4.1E-43 350.9 18.6 214 50-269 29-313 (341)
26 PRK13794 hypothetical protein; 100.0 3.1E-38 6.7E-43 365.0 19.0 196 688-890 224-425 (479)
27 TIGR02039 CysD sulfate adenyly 100.0 2.5E-37 5.5E-42 332.4 18.1 200 692-900 1-276 (294)
28 PF01507 PAPS_reduct: Phosphoa 100.0 1E-37 2.2E-42 317.0 13.8 172 712-888 1-174 (174)
29 PRK13795 hypothetical protein; 100.0 5.7E-37 1.2E-41 366.7 19.4 198 687-890 219-421 (636)
30 PRK14989 nitrite reductase sub 100.0 1.4E-36 3E-41 373.9 22.6 209 47-269 559-770 (847)
31 TIGR02374 nitri_red_nirB nitri 100.0 2.4E-36 5.2E-41 372.4 22.3 212 43-269 544-756 (785)
32 TIGR02064 dsrA sulfite reducta 100.0 5.4E-36 1.2E-40 335.8 21.4 234 29-267 48-366 (402)
33 PRK09567 nirA ferredoxin-nitri 100.0 6.6E-36 1.4E-40 354.9 21.8 256 2-269 322-588 (593)
34 PRK05253 sulfate adenylyltrans 100.0 7.5E-36 1.6E-40 324.3 19.9 201 691-900 8-283 (301)
35 TIGR02912 sulfite_red_C sulfit 100.0 3.9E-35 8.5E-40 324.9 18.5 223 42-270 9-299 (314)
36 COG3749 Uncharacterized protei 100.0 3.3E-35 7.2E-40 275.1 8.3 160 526-694 2-163 (167)
37 PRK09566 nirA ferredoxin-nitri 100.0 9.8E-34 2.1E-38 333.0 18.5 222 318-547 50-285 (513)
38 PF06073 DUF934: Bacterial pro 100.0 1.9E-34 4E-39 262.0 9.3 108 583-694 1-108 (110)
39 PLN00178 sulfite reductase 100.0 2.2E-33 4.8E-38 332.8 21.1 253 2-271 359-617 (623)
40 TIGR02042 sir ferredoxin-sulfi 100.0 2.6E-33 5.7E-38 330.9 18.7 248 1-269 316-576 (577)
41 PLN02431 ferredoxin--nitrite r 100.0 1.4E-32 2.9E-37 324.1 18.7 220 318-546 120-355 (587)
42 PRK14989 nitrite reductase sub 100.0 1.6E-32 3.4E-37 338.1 18.6 203 328-546 559-766 (847)
43 TIGR02374 nitri_red_nirB nitri 100.0 1.9E-32 4.1E-37 337.8 17.9 204 327-545 547-751 (785)
44 TIGR02435 CobG precorrin-3B sy 100.0 8.1E-32 1.7E-36 306.9 18.9 212 320-546 3-219 (390)
45 TIGR02041 CysI sulfite reducta 100.0 2.1E-31 4.7E-36 314.4 19.1 204 334-546 61-303 (541)
46 PRK13504 sulfite reductase sub 100.0 2.2E-31 4.7E-36 316.5 19.0 209 42-260 343-557 (569)
47 TIGR02912 sulfite_red_C sulfit 100.0 5.3E-31 1.1E-35 291.9 15.6 213 324-547 10-295 (314)
48 PRK08576 hypothetical protein; 100.0 1.7E-30 3.6E-35 293.7 18.5 176 706-890 228-408 (438)
49 cd01713 PAPS_reductase This do 100.0 3.1E-29 6.8E-34 253.4 16.6 167 712-881 1-173 (173)
50 PF01077 NIR_SIR: Nitrite and 100.0 3.5E-29 7.6E-34 250.2 12.0 152 119-272 1-154 (157)
51 TIGR03183 DNA_S_dndC putative 100.0 5.1E-29 1.1E-33 281.9 14.7 187 701-890 3-250 (447)
52 PRK06850 hypothetical protein; 100.0 2.5E-28 5.3E-33 278.8 16.5 195 693-890 16-269 (507)
53 COG0155 CysI Sulfite reductase 100.0 1.4E-26 3.1E-31 266.0 26.4 363 324-729 47-433 (510)
54 COG1251 NirB NAD(P)H-nitrite r 99.9 8.1E-25 1.7E-29 251.9 14.3 206 48-269 548-754 (793)
55 PF01077 NIR_SIR: Nitrite and 99.9 1.1E-24 2.3E-29 217.8 9.3 138 408-547 4-148 (157)
56 COG3969 Predicted phosphoadeno 99.9 1.2E-21 2.6E-26 205.7 13.0 205 694-900 11-264 (407)
57 COG1251 NirB NAD(P)H-nitrite r 99.9 7.1E-22 1.5E-26 227.8 11.8 198 332-546 550-750 (793)
58 KOG0560|consensus 99.8 5.4E-19 1.2E-23 192.1 10.0 248 1-265 374-628 (638)
59 PF03460 NIR_SIR_ferr: Nitrite 99.5 1.3E-14 2.8E-19 124.0 6.0 66 46-111 1-69 (69)
60 PF03460 NIR_SIR_ferr: Nitrite 99.4 2E-13 4.4E-18 116.7 5.7 68 327-399 1-69 (69)
61 cd01992 PP-ATPase N-terminal d 99.4 2E-12 4.4E-17 132.8 11.6 148 712-873 1-167 (185)
62 KOG2644|consensus 99.4 5.7E-13 1.2E-17 139.4 6.4 154 713-891 85-250 (282)
63 cd01993 Alpha_ANH_like_II This 99.3 2.2E-11 4.8E-16 124.9 10.8 155 712-872 1-177 (185)
64 TIGR02432 lysidine_TilS_N tRNA 99.2 4.6E-11 1E-15 123.2 12.2 151 712-873 1-171 (189)
65 PRK00366 ispG 4-hydroxy-3-meth 99.1 5.6E-10 1.2E-14 121.0 10.3 122 370-522 236-358 (360)
66 PRK10696 tRNA 2-thiocytidine b 99.0 2.3E-09 4.9E-14 116.1 14.6 161 697-870 10-198 (258)
67 TIGR00268 conserved hypothetic 98.9 2E-08 4.3E-13 108.4 14.4 151 701-870 3-161 (252)
68 PRK00366 ispG 4-hydroxy-3-meth 98.9 8.6E-09 1.9E-13 111.9 10.9 115 94-238 242-357 (360)
69 PRK00074 guaA GMP synthase; Re 98.9 3.8E-08 8.3E-13 116.2 16.3 176 691-875 197-387 (511)
70 PRK00919 GMP synthase subunit 98.8 5.2E-08 1.1E-12 106.9 15.3 174 691-875 3-185 (307)
71 PF01171 ATP_bind_3: PP-loop f 98.8 1.5E-08 3.2E-13 104.0 10.3 147 712-872 1-166 (182)
72 cd01990 Alpha_ANH_like_I This 98.8 2E-08 4.3E-13 104.8 10.6 142 713-869 1-148 (202)
73 cd01995 ExsB ExsB is a transcr 98.8 6E-08 1.3E-12 98.2 13.4 135 712-874 1-145 (169)
74 COG0037 MesJ tRNA(Ile)-lysidin 98.7 7.7E-08 1.7E-12 106.6 13.6 160 699-869 6-188 (298)
75 cd01712 ThiI ThiI is required 98.7 9.5E-08 2.1E-12 97.5 12.4 148 712-868 1-157 (177)
76 TIGR00884 guaA_Cterm GMP synth 98.7 2E-07 4.2E-12 103.1 14.3 172 695-875 2-187 (311)
77 cd01997 GMP_synthase_C The C-t 98.6 3.9E-07 8.4E-12 99.9 14.4 156 712-875 1-172 (295)
78 PRK14665 mnmA tRNA-specific 2- 98.6 3.9E-07 8.4E-12 102.6 12.6 168 709-886 4-196 (360)
79 PRK14561 hypothetical protein; 98.6 5.5E-07 1.2E-11 93.2 12.7 142 712-865 2-146 (194)
80 PRK10660 tilS tRNA(Ile)-lysidi 98.6 2.7E-07 5.8E-12 107.1 11.0 155 701-871 6-179 (436)
81 cd01998 tRNA_Me_trans tRNA met 98.5 6.8E-07 1.5E-11 100.9 13.9 155 712-869 1-183 (349)
82 PRK00143 mnmA tRNA-specific 2- 98.5 3.6E-07 7.7E-12 103.0 11.5 156 712-870 2-183 (346)
83 COG1606 ATP-utilizing enzymes 98.5 4.9E-07 1.1E-11 93.8 11.1 151 700-870 7-167 (269)
84 TIGR00420 trmU tRNA (5-methyla 98.5 8E-07 1.7E-11 100.2 13.9 157 712-871 2-188 (352)
85 PRK08349 hypothetical protein; 98.5 8.2E-07 1.8E-11 92.4 11.4 148 712-868 2-159 (198)
86 PLN02347 GMP synthetase 98.4 1.7E-06 3.7E-11 102.2 13.9 177 691-875 210-411 (536)
87 cd00553 NAD_synthase NAD+ synt 98.4 2.8E-06 6E-11 91.6 14.4 169 693-870 4-180 (248)
88 PRK13980 NAD synthetase; Provi 98.4 4.6E-06 1E-10 90.7 15.1 171 692-875 10-186 (265)
89 TIGR00364 exsB protein. This p 98.3 4.3E-06 9.3E-11 87.2 12.5 159 713-872 1-181 (201)
90 cd01996 Alpha_ANH_like_III Thi 98.3 2.4E-06 5.2E-11 85.0 10.0 113 712-830 3-119 (154)
91 TIGR00552 nadE NAD+ synthetase 98.3 1.2E-05 2.5E-10 86.9 15.7 165 696-869 6-177 (250)
92 TIGR00032 argG argininosuccina 98.3 6.2E-06 1.4E-10 93.8 12.9 148 712-870 1-163 (394)
93 cd01999 Argininosuccinate_Synt 98.3 3.8E-06 8.2E-11 95.3 11.1 155 713-874 1-168 (385)
94 PRK11106 queuosine biosynthesi 98.2 1.3E-05 2.8E-10 84.8 12.4 158 711-869 2-180 (231)
95 PRK13820 argininosuccinate syn 98.2 9.9E-06 2.1E-10 91.9 12.2 149 710-870 2-164 (394)
96 PRK00509 argininosuccinate syn 98.2 1.1E-05 2.3E-10 91.6 12.0 150 711-871 3-168 (399)
97 PRK08384 thiamine biosynthesis 98.2 1.4E-05 2.9E-10 90.7 12.5 157 711-886 181-352 (381)
98 TIGR00342 thiazole biosynthesi 98.2 9.9E-06 2.2E-10 92.3 11.2 145 711-867 173-328 (371)
99 PRK14664 tRNA-specific 2-thiou 98.1 1.4E-05 2.9E-10 90.1 10.7 151 710-869 5-177 (362)
100 TIGR03573 WbuX N-acetyl sugar 98.1 2.6E-05 5.6E-10 88.0 13.1 129 692-825 38-172 (343)
101 PLN00200 argininosuccinate syn 98.1 1.2E-05 2.6E-10 91.4 10.3 148 711-870 6-171 (404)
102 PF06508 QueC: Queuosine biosy 98.1 1.1E-05 2.3E-10 84.5 8.4 155 712-873 1-181 (209)
103 PRK04527 argininosuccinate syn 98.0 2.3E-05 5.1E-10 88.6 10.7 151 711-872 3-171 (400)
104 PRK01565 thiamine biosynthesis 98.0 4.7E-05 1E-09 87.5 11.9 143 711-867 177-332 (394)
105 cd01994 Alpha_ANH_like_IV This 97.8 6.5E-05 1.4E-09 77.7 9.5 132 712-868 1-139 (194)
106 PF04551 GcpE: GcpE protein; 97.8 5E-05 1.1E-09 83.2 8.8 122 370-520 236-358 (359)
107 PRK01269 tRNA s(4)U8 sulfurtra 97.8 8.4E-05 1.8E-09 87.7 11.0 144 711-867 178-333 (482)
108 PF02540 NAD_synthase: NAD syn 97.8 6.7E-05 1.5E-09 80.3 8.1 166 697-874 3-175 (242)
109 COG0603 Predicted PP-loop supe 97.8 0.0002 4.4E-09 74.2 11.2 157 711-874 3-185 (222)
110 PRK00876 nadE NAD synthetase; 97.7 0.00078 1.7E-08 74.9 14.8 81 692-772 12-97 (326)
111 PTZ00323 NAD+ synthase; Provis 97.6 0.0012 2.7E-08 72.3 15.5 167 691-868 25-211 (294)
112 PF03054 tRNA_Me_trans: tRNA m 97.6 0.00051 1.1E-08 77.2 11.7 153 712-868 2-186 (356)
113 TIGR00612 ispG_gcpE 1-hydroxy- 97.6 0.00027 5.9E-09 76.8 9.0 117 370-516 227-344 (346)
114 cd01986 Alpha_ANH_like Adenine 97.5 0.00018 3.9E-09 66.5 6.3 45 713-757 1-47 (103)
115 COG0821 gcpE 1-hydroxy-2-methy 97.5 0.00063 1.4E-08 73.5 10.9 127 370-526 229-356 (361)
116 COG0482 TrmU Predicted tRNA(5- 97.5 0.0011 2.4E-08 73.5 12.7 159 711-873 4-189 (356)
117 PRK00768 nadE NAD synthetase; 97.4 0.0027 5.9E-08 68.5 13.7 170 691-868 17-200 (268)
118 TIGR03679 arCOG00187 arCOG0018 97.3 0.0009 1.9E-08 70.6 9.4 129 714-868 1-137 (218)
119 PF04551 GcpE: GcpE protein; 97.2 0.00098 2.1E-08 73.3 7.7 117 93-237 241-358 (359)
120 COG2117 Predicted subunit of t 97.1 0.0014 3.1E-08 63.4 7.7 138 712-863 2-146 (198)
121 PF02568 ThiI: Thiamine biosyn 97.1 0.0023 5.1E-08 66.0 9.7 145 711-867 4-161 (197)
122 KOG2805|consensus 97.0 0.01 2.2E-07 63.6 13.1 157 709-868 4-192 (377)
123 TIGR00612 ispG_gcpE 1-hydroxy- 96.8 0.0049 1.1E-07 67.3 9.3 110 95-233 234-344 (346)
124 cd01991 Asn_Synthase_B_C The C 96.8 0.0049 1.1E-07 67.1 9.2 75 702-776 7-82 (269)
125 COG0519 GuaA GMP synthase, PP- 96.8 0.0049 1.1E-07 65.2 8.5 173 693-875 5-191 (315)
126 COG0821 gcpE 1-hydroxy-2-methy 96.7 0.014 3.1E-07 63.4 11.2 120 95-243 236-356 (361)
127 PRK13981 NAD synthetase; Provi 96.6 0.025 5.3E-07 68.2 14.6 167 692-866 260-433 (540)
128 PRK05370 argininosuccinate syn 96.6 0.014 3.1E-07 66.5 11.1 153 711-870 12-184 (447)
129 PRK02628 nadE NAD synthetase; 96.5 0.035 7.6E-07 68.5 14.8 161 697-865 346-521 (679)
130 PF00733 Asn_synthase: Asparag 96.3 0.017 3.6E-07 62.0 9.8 75 701-775 8-83 (255)
131 TIGR00290 MJ0570_dom MJ0570-re 96.3 0.016 3.5E-07 61.0 8.7 125 712-867 2-135 (223)
132 PLN02925 4-hydroxy-3-methylbut 96.2 0.02 4.3E-07 68.2 9.5 109 390-525 616-725 (733)
133 cd01984 AANH_like Adenine nucl 96.1 0.02 4.4E-07 50.7 7.1 56 713-774 1-59 (86)
134 PF00764 Arginosuc_synth: Argi 95.9 0.014 3E-07 66.1 6.6 158 714-877 1-169 (388)
135 TIGR01536 asn_synth_AEB aspara 95.6 0.11 2.3E-06 61.6 13.1 127 693-829 232-372 (467)
136 TIGR00289 conserved hypothetic 95.1 0.046 9.9E-07 57.6 6.8 58 712-770 2-65 (222)
137 PLN02925 4-hydroxy-3-methylbut 95.1 0.096 2.1E-06 62.5 10.0 107 104-242 618-725 (733)
138 COG0301 ThiI Thiamine biosynth 95.0 0.15 3.2E-06 57.7 10.8 145 711-867 176-332 (383)
139 PRK00694 4-hydroxy-3-methylbut 94.5 0.15 3.1E-06 59.8 9.2 107 392-525 494-601 (606)
140 COG0171 NadE NAD synthase [Coe 94.5 0.61 1.3E-05 50.5 13.4 171 691-871 4-188 (268)
141 cd01916 ACS_1 Acetyl-CoA synth 93.9 0.05 1.1E-06 66.3 4.2 45 70-114 279-323 (731)
142 PRK02048 4-hydroxy-3-methylbut 93.8 0.22 4.8E-06 58.8 9.0 102 393-518 503-605 (611)
143 COG2102 Predicted ATPases of P 93.7 0.2 4.3E-06 52.1 7.4 126 712-867 2-136 (223)
144 COG0367 AsnB Asparagine syntha 93.6 0.52 1.1E-05 56.6 11.9 96 678-774 193-296 (542)
145 TIGR03104 trio_amidotrans aspa 93.4 0.62 1.3E-05 56.8 12.4 128 693-830 239-380 (589)
146 KOG1622|consensus 93.0 0.53 1.1E-05 53.2 9.9 148 583-771 141-293 (552)
147 PF01902 ATP_bind_4: ATP-bindi 92.6 0.11 2.3E-06 54.8 3.7 59 712-771 2-66 (218)
148 PRK00694 4-hydroxy-3-methylbut 92.5 0.38 8.3E-06 56.4 8.2 93 124-242 508-601 (606)
149 COG0137 ArgG Argininosuccinate 91.8 2.2 4.7E-05 48.0 12.7 148 711-872 5-171 (403)
150 PRK02048 4-hydroxy-3-methylbut 91.7 0.51 1.1E-05 55.9 8.2 92 125-242 517-609 (611)
151 TIGR03108 eps_aminotran_1 exos 90.7 1.8 4E-05 53.2 12.1 127 692-828 236-372 (628)
152 PTZ00077 asparagine synthetase 89.2 2.7 5.9E-05 51.1 11.7 74 696-771 219-308 (586)
153 PRK09431 asnB asparagine synth 88.5 2.1 4.5E-05 51.7 10.1 77 695-773 208-302 (554)
154 cd01916 ACS_1 Acetyl-CoA synth 88.0 0.49 1.1E-05 58.0 4.3 46 357-402 278-323 (731)
155 COG1365 Predicted ATPase (PP-l 87.9 0.66 1.4E-05 47.6 4.4 138 712-869 62-204 (255)
156 PRK00941 acetyl-CoA decarbonyl 86.6 0.71 1.5E-05 56.7 4.5 45 70-114 316-360 (781)
157 PLN02549 asparagine synthase ( 85.7 3.1 6.7E-05 50.5 9.4 73 697-772 208-295 (578)
158 KOG0573|consensus 84.6 2.2 4.7E-05 48.6 6.7 54 711-764 251-317 (520)
159 PLN02339 NAD+ synthase (glutam 81.9 6.7 0.00015 48.8 10.2 76 694-769 330-445 (700)
160 TIGR02090 LEU1_arch isopropylm 79.8 44 0.00095 38.2 15.3 149 604-768 34-189 (363)
161 KOG2840|consensus 79.5 0.5 1.1E-05 51.6 -0.5 146 712-865 53-229 (347)
162 PRK11858 aksA trans-homoaconit 79.0 51 0.0011 37.9 15.5 149 604-768 38-193 (378)
163 TIGR02660 nifV_homocitr homoci 78.4 57 0.0012 37.3 15.7 167 583-768 17-190 (365)
164 cd07939 DRE_TIM_NifV Streptomy 77.7 69 0.0015 34.7 15.4 149 604-768 32-187 (259)
165 cd07948 DRE_TIM_HCS Saccharomy 77.4 76 0.0017 34.5 15.5 167 583-768 16-189 (262)
166 PRK00941 acetyl-CoA decarbonyl 73.8 3.8 8.2E-05 50.6 4.7 46 357-402 315-360 (781)
167 PRK09722 allulose-6-phosphate 69.3 25 0.00053 37.5 9.0 89 572-663 101-197 (229)
168 PRK08091 ribulose-phosphate 3- 63.6 39 0.00084 36.0 9.1 89 572-663 109-207 (228)
169 cd00640 Trp-synth-beta_II Tryp 61.3 1E+02 0.0022 32.7 12.3 146 621-767 62-214 (244)
170 PRK05692 hydroxymethylglutaryl 59.9 2.5E+02 0.0055 30.9 15.1 164 583-768 20-204 (287)
171 PF00834 Ribul_P_3_epim: Ribul 57.0 14 0.0003 38.6 4.4 88 573-663 99-194 (201)
172 PRK08745 ribulose-phosphate 3- 56.9 60 0.0013 34.5 9.2 89 572-663 103-199 (223)
173 PF10281 Ish1: Putative stress 54.7 12 0.00027 27.7 2.6 22 852-873 3-24 (38)
174 PTZ00170 D-ribulose-5-phosphat 44.4 60 0.0013 34.5 6.9 91 570-663 105-201 (228)
175 COG1104 NifS Cysteine sulfinat 43.3 1.1E+02 0.0024 35.1 9.0 91 681-773 29-125 (386)
176 PRK08005 epimerase; Validated 43.2 1.2E+02 0.0026 31.9 8.7 89 571-663 98-191 (210)
177 cd07947 DRE_TIM_Re_CS Clostrid 41.5 5.2E+02 0.011 28.4 15.1 142 606-764 40-201 (279)
178 TIGR01138 cysM cysteine syntha 40.5 1.7E+02 0.0037 32.3 10.0 134 607-745 61-199 (290)
179 PF00072 Response_reg: Respons 40.5 97 0.0021 27.7 6.9 82 585-671 25-107 (112)
180 COG4384 Mu-like prophage prote 39.9 36 0.00078 34.5 3.9 57 366-423 21-81 (203)
181 cd01561 CBS_like CBS_like: Thi 39.3 1.9E+02 0.004 31.8 10.1 124 621-745 65-196 (291)
182 COG1448 TyrB Aspartate/tyrosin 38.4 94 0.002 35.4 7.3 84 10-111 312-395 (396)
183 TIGR03128 RuMP_HxlA 3-hexulose 37.4 3.2E+02 0.0069 28.1 11.0 98 582-685 4-108 (206)
184 PRK09389 (R)-citramalate synth 37.0 8E+02 0.017 29.3 15.8 148 605-768 37-191 (488)
185 cd07940 DRE_TIM_IPMS 2-isoprop 35.1 6.1E+02 0.013 27.4 15.2 149 604-768 32-194 (268)
186 PRK05988 formate dehydrogenase 33.1 2.2E+02 0.0047 28.4 8.4 91 349-464 37-129 (156)
187 PF01257 2Fe-2S_thioredx: Thio 32.1 1.6E+02 0.0036 28.8 7.3 116 349-516 27-144 (145)
188 PRK07539 NADH dehydrogenase su 29.9 2.5E+02 0.0055 27.8 8.3 91 349-464 36-128 (154)
189 PRK14057 epimerase; Provisiona 29.2 2.6E+02 0.0057 30.3 8.7 80 581-663 134-221 (254)
190 PF04273 DUF442: Putative phos 28.6 2.2E+02 0.0049 26.6 7.2 90 638-732 9-108 (110)
191 TIGR01958 nuoE_fam NADH-quinon 28.6 2.8E+02 0.006 27.3 8.2 91 349-464 30-122 (148)
192 cd07938 DRE_TIM_HMGL 3-hydroxy 27.7 8.3E+02 0.018 26.6 14.1 146 604-768 32-198 (274)
193 PF12802 MarR_2: MarR family; 27.0 24 0.00052 28.6 0.3 54 63-119 3-56 (62)
194 COG1751 Uncharacterized conser 26.6 1.7E+02 0.0036 29.0 5.9 60 711-771 29-91 (186)
195 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.4 8.7E+02 0.019 26.5 15.0 155 582-768 14-197 (275)
196 KOG0373|consensus 25.8 2.6E+02 0.0057 29.4 7.5 94 726-820 61-164 (306)
197 cd04726 KGPDC_HPS 3-Keto-L-gul 24.9 4.1E+02 0.0089 27.1 9.2 82 578-665 102-188 (202)
198 PRK08883 ribulose-phosphate 3- 24.9 3.9E+02 0.0085 28.2 9.1 89 572-663 99-195 (220)
199 COG2515 Acd 1-aminocyclopropan 23.9 5E+02 0.011 28.9 9.6 76 690-765 159-240 (323)
200 COG4384 Mu-like prophage prote 23.8 75 0.0016 32.3 3.1 43 77-120 20-66 (203)
201 KOG1706|consensus 23.6 1.5E+02 0.0033 32.6 5.5 36 711-746 6-41 (412)
202 PF03853 YjeF_N: YjeF-related 22.5 1.4E+02 0.0029 30.1 4.9 64 604-668 24-93 (169)
203 PRK11761 cysM cysteine synthas 22.2 4.2E+02 0.0091 29.2 9.2 135 606-745 64-203 (296)
204 PF09869 DUF2096: Uncharacteri 22.2 7E+02 0.015 25.2 9.4 55 330-395 108-162 (169)
205 PLN02970 serine racemase 21.0 5.9E+02 0.013 28.5 10.2 124 621-746 87-212 (328)
206 COG2921 Uncharacterized conser 21.0 2.7E+02 0.0059 25.0 5.6 53 349-401 22-85 (90)
207 COG4273 Uncharacterized conser 20.9 1.2E+02 0.0025 29.0 3.6 67 164-243 67-133 (135)
208 PRK11475 DNA-binding transcrip 20.7 4E+02 0.0087 27.7 8.2 95 581-676 15-110 (207)
209 PRK02261 methylaspartate mutas 20.6 5.6E+02 0.012 24.8 8.6 101 651-758 26-133 (137)
210 PF03853 YjeF_N: YjeF-related 20.6 6.6E+02 0.014 25.1 9.5 72 697-768 7-86 (169)
211 PRK07539 NADH dehydrogenase su 20.5 1.9E+02 0.0041 28.7 5.4 111 63-181 2-129 (154)
212 cd07944 DRE_TIM_HOA_like 4-hyd 20.4 1.1E+03 0.024 25.5 15.5 137 604-768 32-188 (266)
213 PRK09028 cystathionine beta-ly 20.3 7.3E+02 0.016 28.7 10.9 58 712-772 77-134 (394)
214 PRK06608 threonine dehydratase 20.3 4.3E+02 0.0092 29.9 8.8 133 607-745 74-207 (338)
215 PRK07571 bidirectional hydroge 20.1 1.7E+02 0.0037 29.6 5.0 112 61-180 14-142 (169)
216 cd07942 DRE_TIM_LeuA Mycobacte 20.1 1.2E+03 0.026 25.7 15.0 163 583-763 17-205 (284)
No 1
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=2.3e-88 Score=802.45 Aligned_cols=494 Identities=24% Similarity=0.383 Sum_probs=430.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhccccceeeeec---CeeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEe
Q psy3753 8 DHQLVKERVIQYRDQVRRRLSNELSEEEFIVLRLQNGLYLQR---YAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGH 84 (928)
Q Consensus 8 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~---~~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~ 84 (928)
+|+++.++|.+|.+ .|.+++++...+..++|+|.|. +.||+|||+|+|+||++||++||++|++||+|++|
T Consensus 76 ~~l~~~~~l~~~~~------~~~~~~~~~~~~~k~~G~y~~~~~~~~fM~RvripgG~lt~~Q~~~la~ia~~yg~g~~~ 149 (593)
T PRK09567 76 NPFDAWDRLKAQAA------AGAFPKPADNFRWKYHGLFYVAPAQDSYMCRLRIPNGILTHWQFAGLADLADRHGGGYSH 149 (593)
T ss_pred CcchhhhHHHHHHh------cCCCCChhhhhhhccceEEEEcccCCeEEEEEEeCCeecCHHHHHHHHHHHHHHCCCeEE
Confidence 55566666666554 2567644443333369999884 48999999999999999999999999999999999
Q ss_pred ccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCC
Q psy3753 85 FTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPR 164 (928)
Q Consensus 85 lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~ 164 (928)
||||||||||||+.+++++++++|.++||++.++|||++|||++||++|+|+.+++|++++++++.+.+..++++.+||+
T Consensus 150 lTTRq~iQlhgI~~~d~~~i~~~l~~~GL~t~~a~gD~~RNV~~~P~ag~~~~e~~D~~~~a~~l~~~~~~~~~~~~LPr 229 (593)
T PRK09567 150 VTTRANLQLREIPPEHAVPVLEGLVDLGLTARGSGADNIRNVTGSPTAGIDPQELLDTRPYAREWHHHILNDRSLYGLPR 229 (593)
T ss_pred EeccccEEeccCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCcCCCCCCCCChhhccchHHHHHHHHHHHhCCchhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred ceEEEEEecCCCcccccccceEEEEEEecCCe-----eeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHH
Q psy3753 165 KFKISISGSQEDRAAIFVHDIGLRAIKNKLGK-----IGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQ 239 (928)
Q Consensus 165 Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~-----~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~ 239 (928)
||||+||||+++|..+.+|||||++....++. .||+|++||++|+.+ +|..+..+++++++++++++|+++|++
T Consensus 230 Kfkiaisg~~~~~~~~~~nDigf~a~~~~~g~~~~~g~gf~v~vGG~~g~~~-~a~~~~~~v~~e~v~~~~~Ai~~~f~d 308 (593)
T PRK09567 230 KFNVAFDGGGRIATLEDTNDIGFQAVRVLEGAGVAPGVYFRLVLGGITGHKD-FARDTGVLLRPEEATAVADAIVRVFIE 308 (593)
T ss_pred CeEEEEECCCcccccccccceeeEEEEecCCccccccceEEEEEecccCCCc-chhhhhccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998753443 589999999998764 577888889999999999999999999
Q ss_pred hcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhhhhcccCCCCcCCCcchhhhHhhhccCcccc
Q psy3753 240 YGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFE 319 (928)
Q Consensus 240 ~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (928)
+|+|+||+++||+++|++||.++|+++++++++..... ++.+ .... .....
T Consensus 309 ~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~~~~l~~---~~~~------------~~~~--------------~~~~~ 359 (593)
T PRK09567 309 NGDRTNRKKARLKYVLDAWGFDKFLEAVEEKLGRPLTR---VPAE------------AVAP--------------RPAAD 359 (593)
T ss_pred hCCcccchhhHHHHHHHHHCHHHHHHHHHHHhcccccc---cchh------------hcCC--------------Ccchh
Confidence 99999999999999999999999999999887642210 0000 0000 01123
Q ss_pred ccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHC
Q psy3753 320 NWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQY 399 (928)
Q Consensus 320 ~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~ 399 (928)
.|.+.|+++|+++|+|||+|++|. |+++++||+.||++|++||+|.+|+|+||||+|++|+.++++++.++|.+.
T Consensus 360 ~~~~~Gv~~Qkq~G~~~v~v~vp~-----Grlt~~ql~~LA~iA~~yg~g~irlT~~Qni~l~~V~~~~~~~l~~~L~~~ 434 (593)
T PRK09567 360 RFAHVGVHPQKQPGLNWIGVVLPV-----GRLTTDQMRGLAKIAARYGDGEIRLTVWQNLLISGVPDADVAAVEAAIEAL 434 (593)
T ss_pred ccccceeeccCCCCceEEEEECCC-----CccCHHHHHHHHHHHHHhCCCEEEEeCCCCeEEcCCCHHHHHHHHHHHHHc
Confidence 355679999999999999998855 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCCeEEEEecCCCCCcccccccEEEEeEee---
Q psy3753 400 GLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNK--- 476 (928)
Q Consensus 400 Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~--- 476 (928)
||.+.+++.+++++||+|+++|+++++||++++.+|.+++...+ .++.++|||||||||+|++|+++||||+|...
T Consensus 435 Gl~~~~~~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~-~l~~~ikI~vSGCpn~Ca~~~iaDIGfvG~~~~~~ 513 (593)
T PRK09567 435 GLTTEASSIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPRV-ALDQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVS 513 (593)
T ss_pred CCCCCCcceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHHhc-CCCCCcEEEEECCCccccccccCCEEEEeeEeccC
Confidence 99987766677899999999999999999999999999886222 34568999999999999999999999999753
Q ss_pred --CCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcc-cccccccccceeehhhhhhh
Q psy3753 477 --NGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCY-LMCKIIKNDTIVNDNWKMLY 545 (928)
Q Consensus 477 --~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~-~~eR~~k~~~i~r~g~~~~~ 545 (928)
+...+|+|++||+.+..+++|+.+..+++.++++++++++++.|.++++ +.|++ ++.+.|.+...+.
T Consensus 514 ~g~~~~gy~v~lGG~~g~~~~lg~~~~~~vp~eev~~~l~~ll~~y~~~r~~~~E~f--~~f~~R~g~e~l~ 583 (593)
T PRK09567 514 EGDTVEGYHIVVGGGFGEDAAIGREVFRDVKAEDAPRLVERLLRAYLAHRQGPDETF--QAFTRRHDPEALR 583 (593)
T ss_pred CCCccceEEEEECCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcH--HHHHHHcCcHHHH
Confidence 2347999999999988899999998899999999999999999999999 49999 8888887765443
No 2
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=1.8e-87 Score=787.87 Aligned_cols=478 Identities=26% Similarity=0.430 Sum_probs=412.2
Q ss_pred cCHHHHH--HHHHHHHHHHHHHhcCCCCH-----HHHhhccccceeeeec----CeeEEEEEcCCCccCHHHHHHHHHHH
Q psy3753 7 YDHQLVK--ERVIQYRDQVRRRLSNELSE-----EEFIVLRLQNGLYLQR----YAYMLRIAIPYGMLSSKQMRMLSYIA 75 (928)
Q Consensus 7 ~~~~~~~--~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~~~q~----~~~~vRir~p~G~lt~~ql~~la~iA 75 (928)
-+|++++ ++|++|.+.. ..++++ +++.....++|+|.|+ +.||+|||+|+|.||++||+.||+||
T Consensus 85 ~~~~~~~~~~~i~~~a~~g----~~~i~~~~~~~~d~~~r~kw~Gl~~~~~~~~~~fMlRvRiPgG~lt~~Qlr~la~ia 160 (587)
T PLN02431 85 KEPMKLFMENGIEELAKTP----FEEIDKSKLSKDDIDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVI 160 (587)
T ss_pred cCcccccchhhHHHHHhcC----hhhcCcccCChHHHHhhhhheeeeeecCCCCCceEEEEecCCcccCHHHHHHHHHHH
Confidence 3677775 4688887765 355655 8886444469999883 38999999999999999999999999
Q ss_pred HHhC-CCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhc
Q psy3753 76 KKYD-RNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWST 154 (928)
Q Consensus 76 ~~yg-~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~ 154 (928)
++|| +|++|||||||||||||+.+++++++++|.++||++.++|||++|||++||++|+|+++++|+++++++|.+++.
T Consensus 161 ~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~~L~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~~Dt~pla~~l~~~~~ 240 (587)
T PLN02431 161 EKYGEDGCADVTTRQNWQIRGVVLPDVPAILKGLEEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSDYIT 240 (587)
T ss_pred HHhCCCCeEEEecCcceEeCCCCHHHHHHHHHHHHHcCCCchhccCCCCCCcccCCCCCCCccccccHHHHHHHHHHHhh
Confidence 9999 589999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----cCCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCCC-cccccccccCChHHHHHH
Q psy3753 155 ----FHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTP-IIGQIICKFLPWKHILTY 229 (928)
Q Consensus 155 ----~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p-~~g~~l~~~v~~~e~~~~ 229 (928)
.+|++.+||+||||+||||+++|+.+.+|||||++..+ ++..||+|++||++|.+| ..+..+..|+++++++++
T Consensus 241 ~~~~~~~~~~~LPrKfkiavsG~~~~~~~~~~nDigf~~~~~-~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~v 319 (587)
T PLN02431 241 NNGRGNPEITNLPRKWNVCVVGSHDLFEHPHINDLAYMPATK-DGRFGFNLLVGGFFSPKRCAEAIPLDAWVPADDVVPL 319 (587)
T ss_pred hcccCCcccccCCCCeEEEEecCccccccccccceEEEEEEE-CCceEEEEEEeCCcCCCCccccchhhcccCHHHHHHH
Confidence 68999999999999999999999999999999999876 566799999999999875 356678889999999999
Q ss_pred HHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhhhhcccCCCCcCCCcchhhhH
Q psy3753 230 IEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILK 309 (928)
Q Consensus 230 ~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (928)
+++++++|+++|+|+||+++||+++|++||.++|++.+++++... .|... +. ....
T Consensus 320 ~~av~~~f~d~G~R~~R~kaRlk~li~~~G~e~f~~~v~~~~~~~-----~l~~~-----------~~-~~~~------- 375 (587)
T PLN02431 320 CKAILEAFRDLGTRGNRQKTRMMWLIDELGVEGFRSEVEKRMPNG-----ELERA-----------AS-EDLV------- 375 (587)
T ss_pred HHHHHHHHHHhCCccchhhhHHHHHHHHhhHHHHHHHHHHHhccC-----CCCcc-----------cc-cccc-------
Confidence 999999999999999999999999999999999999998775311 01000 00 0000
Q ss_pred hhhccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCH
Q psy3753 310 EKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNL 389 (928)
Q Consensus 310 ~~~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~ 389 (928)
.....+..+.|+|+|+++|+|||++++|. |++|++||+.||++|++||+|++|+|++|||+|++|+.+++
T Consensus 376 -----~~~~~~~~~~Gv~~Qk~~G~~~v~v~vp~-----Grlt~~qL~~LA~lA~~yG~g~irlT~~Qni~i~~V~~~~v 445 (587)
T PLN02431 376 -----DKKWERRDYLGVHPQKQEGLSYVGLHVPV-----GRLQAADMDELARLADEYGSGELRLTVEQNIIIPNVPNSKV 445 (587)
T ss_pred -----cchhcccceeEEEeeccCCeEEEEEEcCC-----CCCCHHHHHHHHHHHHHhCCCeEEEcCCCCEEECCCCHHHH
Confidence 00000112358899999999999998854 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCCeEEEEecCCCCCcccccccE
Q psy3753 390 FNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIGNI 469 (928)
Q Consensus 390 ~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k~ki~iSGCpn~C~~~~~aDi 469 (928)
++++++|...|+.+.++..+++++||+|+++|..+++||++++.+|.+++. ....++.|+|||||||||+|++|+++||
T Consensus 446 ~~l~~~l~~~g~~~~~~~~~r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~-~~~~lp~k~kI~vSGCpn~C~~~~iaDI 524 (587)
T PLN02431 446 EALLAEPLLQRFSPNPGLLLKGLVACTGNQFCGQAIIETKARALKVTEELE-RLVEVPRPVRMHWTGCPNSCGQVQVADI 524 (587)
T ss_pred HHHHHHHHhcCCCCCCCCCccceeECCCccccCccHHHHHHHHHHHHHHHH-HhhcCCCCeEEEEECCcccccccccccE
Confidence 999999988888877666799999999999999999999999999998875 1123455999999999999999999999
Q ss_pred EEEeEee---CC--CcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHH-HHHHHhc
Q psy3753 470 GILGLNK---NG--NEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRIL-KVYLRRC 524 (928)
Q Consensus 470 g~ig~~~---~~--~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~-~~y~e~~ 524 (928)
||+|+.. ++ ..||+|++||+.|.++++|+.+..+++.+|+++++++++ +.|..++
T Consensus 525 G~vG~~~~~~~g~~v~gf~V~lGG~~G~~~~~g~~l~~~Vp~eel~~~v~~il~~~~~~~~ 585 (587)
T PLN02431 525 GFMGCMARDENGKAVEGADIFVGGRVGSDSHLAEEYKKGVPCDELVPVVADILIEEFGAKE 585 (587)
T ss_pred EEEeeeeecCCCccceEEEEEECCcCCCCCccchhhhcCCCHHHHHHHHHHHHHHHhhhcc
Confidence 9999642 12 358999999999988999999999999999999999954 5554443
No 3
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=5e-86 Score=774.85 Aligned_cols=477 Identities=27% Similarity=0.441 Sum_probs=418.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhccccceeeee-c--CeeEEEEEcCCCccCHHHHHHHHHHHHHhC-CC
Q psy3753 6 KYDHQLVKERVIQYRDQVRRRLSNELSEEEFIVLRLQNGLYLQ-R--YAYMLRIAIPYGMLSSKQMRMLSYIAKKYD-RN 81 (928)
Q Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q-~--~~~~vRir~p~G~lt~~ql~~la~iA~~yg-~g 81 (928)
|-+|++++++|.+|.+... ..+++++++....++|+|.+ + +.||||||+|+|.||++||+.||++|++|| +|
T Consensus 21 ~~~~~~~~~~i~~~a~~~~----~~~~~~d~~~~~~~~G~~~~~~~~g~fmvRvrip~G~lt~~Qlr~la~ia~~yg~~g 96 (513)
T PRK09566 21 EKDGLAVKDELEKFAQIGW----EAMDETDLELRLKWLGMFWRPVTPGKFMLRLRVPNGILTSEQLRVLASIVQRYGDDG 96 (513)
T ss_pred ccCHHHHHHHHHHHHHhCc----ccCCHHHHhhhheeeEEeeEcCCCCeEEEEeccCCccCCHHHHHHHHHHHHHhCCCC
Confidence 4589999999999998863 45888888654445999954 3 489999999999999999999999999999 68
Q ss_pred eEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhc----cCC
Q psy3753 82 YGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWST----FHP 157 (928)
Q Consensus 82 ~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~----~~~ 157 (928)
++|||||||||||||+.+++++++++|.++||.+.++++|++|||++||++|+|+.+++|++++|++|.++|. .+|
T Consensus 97 ~i~lTtRQniql~~i~~~dl~~i~~~L~~~GL~~~~~~~d~vRnv~~~P~ag~~~~e~~D~~~la~~l~~~~~~~~~~~~ 176 (513)
T PRK09566 97 SADITTRQNLQLRGILLEDLPEILNRLKAVGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNP 176 (513)
T ss_pred eEEEEcccceeecCCcHHHHHHHHHHHHHcCCCchhccCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHhhcccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 488
Q ss_pred ccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCC-CcccccccccCChHHHHHHHHHHHHH
Q psy3753 158 EFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRT-PIIGQIICKFLPWKHILTYIEAILRI 236 (928)
Q Consensus 158 ~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~-p~~g~~l~~~v~~~e~~~~~~ai~~~ 236 (928)
++.+||+||||+||||+++|+.+.++||||++... ++..||+|++||++|.+ |..|..+..+++++++++++++++++
T Consensus 177 ~~~~LPrKfki~vsGc~~~c~~~~i~DiG~~~~~~-~~~~gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~av~~~ 255 (513)
T PRK09566 177 EFSNLPRKFNIAIAGGRDNSVHAEINDIAFVPAYK-DGVLGFNVLVGGFFSSQRCAYAIPLNAWVKPDEVVRLCRAILEV 255 (513)
T ss_pred cccCCCCceEEEEECCCCCcccccccceEEEEEEE-CCeeEEEEEEecccCCCCCcCceeeeeecCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999876 56779999999999874 66899999999999999999999999
Q ss_pred HHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhhhhcccCCCCcCCCcchhhhHhhhccCc
Q psy3753 237 YNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNK 316 (928)
Q Consensus 237 ~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (928)
|+++|+|+||.++||+++++++|.++|++.++++++..... ..... ...+
T Consensus 256 f~~~g~r~~r~k~Rl~~lv~~~G~e~f~~~v~~~~~~~~~~------------------~~~~~------~~~~------ 305 (513)
T PRK09566 256 YRDNGLRANRQKGRLMWLIDEWGIEKFRAAVEAQFGPPLLT------------------AAPGD------EIDW------ 305 (513)
T ss_pred HHHhCCcccchhhhHHHHHHHhhHHHHHHHHHHHhCcccCC------------------cccch------hhcc------
Confidence 99999999999999999999999999999999876532110 00000 0000
Q ss_pred cccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHH
Q psy3753 317 EFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEI 396 (928)
Q Consensus 317 ~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L 396 (928)
....+.|+++|+++|+|+|++++|. |++|++||+.||++|++||+|++|+|++|||+|++|+.++++++++++
T Consensus 306 --~~~~~~Gv~~qk~~G~~~v~v~vp~-----G~lt~~~l~~la~ia~~yg~g~irlT~~Qni~l~~i~~~~v~~l~~~~ 378 (513)
T PRK09566 306 --EKRDHIGVHPQKQAGLNYVGLHVPV-----GRLYAEDMFELARLAEVYGSGEIRLTVEQNVIIPNIPDENLETFLAEP 378 (513)
T ss_pred --ccccccceeecCcCCeEEEEEEcCC-----ccCCHHHHHHHHHHHHHhCCCeEEEcCCCCEEEeCCCHHHHHHHHHHH
Confidence 0011358899999999999998854 999999999999999999999999999999999999999999999998
Q ss_pred HHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCCeEEEEecCCCCCcccccccEEEEeEee
Q psy3753 397 KQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNK 476 (928)
Q Consensus 397 ~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~ 476 (928)
...|+.+.+++.+++++||+|+++|+++++||++++.+|.+++. ....+|.|+|||||||||+|++|+++||||+|+..
T Consensus 379 ~~~~~~~~~~~~~~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~-~~~~lp~~~kI~iSGCpn~C~~~~iaDIG~~G~~~ 457 (513)
T PRK09566 379 LLQKFSLEPGPLARGLVSCTGNQYCNFALIETKNRALALAKELD-AELDLPQPVRIHWTGCPNSCGQPQVADIGLMGTKA 457 (513)
T ss_pred hhccCCCCCCccccCceeCcCcccccccHhhHHHHHHHHHHHHH-HhcCCCCceEEEEECChhhhhchhhCCEEEEEEEe
Confidence 77777776666799999999999999999999999999988875 11234459999999999999999999999999753
Q ss_pred --CC--CcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcc
Q psy3753 477 --NG--NEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCY 525 (928)
Q Consensus 477 --~~--~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~ 525 (928)
++ ..||+|++||+.|.++++|+.+..+++.+++++++++|+..|.+..+
T Consensus 458 ~~dg~~~~g~~i~lGG~~g~~~~~g~~~~~~v~~~ev~~~i~~l~~~~~~~~~ 510 (513)
T PRK09566 458 RKNGKTVEGVDIYMGGKVGKDAKLGECVQKGIPCEDLKPVLKDLLIEQFGAKP 510 (513)
T ss_pred ecCCcccceEEEEeCCccCccccccchhhcCcCHHHHHHHHHHHHHHHhhhcc
Confidence 22 37899999999988899999999999999999999998877765544
No 4
>PLN00178 sulfite reductase
Probab=100.00 E-value=3.6e-83 Score=756.25 Aligned_cols=467 Identities=22% Similarity=0.395 Sum_probs=404.8
Q ss_pred CCCCHHHHhhccccceeeeecC---------eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCC
Q psy3753 29 NELSEEEFIVLRLQNGLYLQRY---------AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLK 99 (928)
Q Consensus 29 ~~~~~~~~~~~~~~~G~~~q~~---------~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e 99 (928)
..+++++.+.++ ++|+|+|+| .||+|+|+|+|+||++|+++|+++|++||+|++|||||||||||||..+
T Consensus 79 ~~~~~~d~~~~K-~~G~y~q~~r~~r~~~~~~fMlRvriPgG~lt~~Q~~~la~iA~~yg~g~l~lTTRq~iQlhgI~~~ 157 (623)
T PLN00178 79 PNINEDAVQLIK-FHGSYQQDNREKRGGKAYQFMLRTKQPAGKVPNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKK 157 (623)
T ss_pred CCCChhHHhHhh-eeeeeeecCccccCCcCcceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEecccceEEcCCCHH
Confidence 468889988444 699999952 6999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhc-------------------------
Q psy3753 100 ESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWST------------------------- 154 (928)
Q Consensus 100 ~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~------------------------- 154 (928)
++++++++|.++|+++.++|||++|||++||. +.|..++.|++++|++|.++|.
T Consensus 158 dl~~i~~~L~~~gl~t~~a~gD~~RNV~~~p~-p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~ 236 (623)
T PLN00178 158 DLKTVMSSIIKNMGSTLGACGDVNRNVLAPAA-PFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVT 236 (623)
T ss_pred HHHHHHHHHHHcCCCcccccCCCCCCeecCCC-cCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhh
Confidence 99999999999999999999999999999995 6778899999999999987643
Q ss_pred -------------cCCc----cccCCCceEEEEEecCCCcccccccceEEEEEEecCCe-eeEEEEEcccCCCC------
Q psy3753 155 -------------FHPE----FAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGK-IGFCVIVGGGMGRT------ 210 (928)
Q Consensus 155 -------------~~~~----~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~-~gf~v~vGG~~g~~------ 210 (928)
++++ ..+||+||||+|+||+++|+.+.+|||||++..+++|+ .||+|++||++|++
T Consensus 237 ~~~~~~~~~~~~~~~~ep~yg~~~LPRKFKiavsg~~~n~~~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t 316 (623)
T PLN00178 237 KARNDNSHGTNFEDSPEPIYGTQFLPRKFKIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETT 316 (623)
T ss_pred hhhhcccccccccCCccccccccCCCCCeEEEEecCccccccccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCC
Confidence 1333 24799999999999999999999999999998764343 69999999999986
Q ss_pred -CcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhh
Q psy3753 211 -PIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRV 289 (928)
Q Consensus 211 -p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~ 289 (928)
|++|..++ |++++++++++++|+.+|+++|+|+||+++||+++|++||.++|+++++++++.....
T Consensus 317 ~pr~a~~l~-~v~~e~v~~v~~av~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~g~~~~~------------ 383 (623)
T PLN00178 317 FPRLADPLG-YVPKEDILYAVKAIVATQRDYGRRDDRKQSRMKYLVHSWGIEKFRSVVEQYYGKKFEP------------ 383 (623)
T ss_pred CCccccccC-cCCHHHHHHHHHHHHHHHHHhCcccchhhhHHHHHHHHHCHHHHHHHHHHHhcccccC------------
Confidence 89999996 9999999999999999999999999999999999999999999999999987643211
Q ss_pred hhcccCCCCcCCCcchhhhHhhhccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCC
Q psy3753 290 KKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFS 369 (928)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g 369 (928)
+. +.+. ....++ .|+++|++ |.++++|+++. |+++++||+.|++||++||.
T Consensus 384 ------~~--~~~~---------~~~~d~-----~G~~~q~d-G~~~v~l~vp~-----Grit~~~l~~La~iAe~yg~- 434 (623)
T PLN00178 384 ------FR--ELPE---------WEFKSY-----LGWHEQGD-GKLFYGVHVDN-----GRIKGEAKKALREVIEKYNL- 434 (623)
T ss_pred ------CC--Cccc---------cccccc-----eeEEEccC-CcEEEEEecCC-----eecCHHHHHHHHHHHHHhCC-
Confidence 00 0000 011122 35566664 78889988754 99999999999999999985
Q ss_pred cEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCc-c-cccceeccCCcccccccccchHHHHHHHHHHhc-----cc
Q psy3753 370 ELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNI-N-LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS-----KD 442 (928)
Q Consensus 370 ~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~-~-~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~-----~~ 442 (928)
.+|+|++|||+|++|+.++++++.+.|.+.|+.+... + .+++++||+|.++|++++++|..++..|.+++. ..
T Consensus 435 ~iRlT~~Qnlil~~I~~~~~~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~l~~~~~~~~ 514 (623)
T PLN00178 435 PVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKRVRAMFNKVG 514 (623)
T ss_pred cEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999986543 3 478889999999999999999999888777654 11
Q ss_pred CcCCCCCeEEEEecCCCCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHH
Q psy3753 443 DQRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLR 522 (928)
Q Consensus 443 ~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e 522 (928)
++ .+.+++||||||||+|++|+++||||+|.. ..+|+||+||+. .++++|+.+...++.++++++++.+++.|++
T Consensus 515 l~-~~~~i~I~vSGCpNgCarp~iaDIGlvG~~---~~~Y~I~lGG~~-~~~~la~~~~~~V~~eei~~~le~ll~~y~~ 589 (623)
T PLN00178 515 LK-YDESVVVRMTGCPNGCARPYMAELGFVGDG---PNSYQIWLGGTP-NQTRLAEPFMDKVKVDDLEKVLEPLFYMWKQ 589 (623)
T ss_pred CC-CCCceEEEEeCCCccccccccCcEEEEcCC---CCeEEEEECCCC-CcccccchhhcCcCHHHHHHHHHHHHHHHHH
Confidence 22 135899999999999999999999999942 358999999985 4688999998899999999999999999999
Q ss_pred hcccccccccccceeehhhhhhhh
Q psy3753 523 RCYLMCKIIKNDTIVNDNWKMLYE 546 (928)
Q Consensus 523 ~~~~~eR~~k~~~i~r~g~~~~~e 546 (928)
++++.||+ ++.+.|.|+..+-+
T Consensus 590 ~r~~~E~f--~df~~R~G~e~~~~ 611 (623)
T PLN00178 590 QRQEKESF--GDFTNRVGFEALKE 611 (623)
T ss_pred hCcCCCCH--HHHHHHcCcHHHHH
Confidence 99999999 99999998876653
No 5
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=100.00 E-value=4.2e-83 Score=757.99 Aligned_cols=463 Identities=22% Similarity=0.391 Sum_probs=403.9
Q ss_pred cCCCCHHHHhhccccceeeeecC----------------eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCce
Q psy3753 28 SNELSEEEFIVLRLQNGLYLQRY----------------AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNI 91 (928)
Q Consensus 28 ~~~~~~~~~~~~~~~~G~~~q~~----------------~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~i 91 (928)
.+++++++++.++. +|+|+|++ .||+|||+|+|+||++||++||++|++||+|++||||||||
T Consensus 37 ~~~~~~~~~~~lk~-~G~y~q~~r~~r~~~~~~~~~~~~~fm~RvriP~G~lt~~Ql~~la~la~~yg~G~i~lTtRQni 115 (569)
T PRK13504 37 TGGFSEDDFQLLKF-HGSYQQDDRDIRAERAEQKLEPAYQFMLRCRLPGGVITPQQWLALDKLADEYGNGTLRLTTRQTF 115 (569)
T ss_pred cCCCCHHHHHHHhh-eeeeEecchhhhhhhcccccCcCcceEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEecccce
Confidence 68999999987774 99999963 59999999999999999999999999999999999999999
Q ss_pred EEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhc-----------------
Q psy3753 92 QFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWST----------------- 154 (928)
Q Consensus 92 ql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~----------------- 154 (928)
|||||+.+++++++++|.++||.+.++|||++|||++||+ +.|..+++|+.+++.+|.+.|.
T Consensus 116 QL~gI~~~~l~~i~~~L~~~gl~t~~a~gd~~RNV~~~p~-~~~~~~~~d~~~la~~l~~~l~~~~~~y~~~~~~~~~~~ 194 (569)
T PRK13504 116 QFHGILKKNLKPVIQTINSVLLDTLAACGDVNRNVMCTPN-PYESRLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVA 194 (569)
T ss_pred eecCCchHhHHHHHHHHHHcCCCcccccCCCCCceecCCC-cccccchHHHHHHHHHHHHHhccccchhHHhhhcCcccc
Confidence 9999999999999999999999999999999999999996 5888999999999999988763
Q ss_pred ------cCCcc--ccCCCceEEEEEecCCCcccccccceEEEEEEecCC-eeeEEEEEcccCCCC-------Cccccccc
Q psy3753 155 ------FHPEF--AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLG-KIGFCVIVGGGMGRT-------PIIGQIIC 218 (928)
Q Consensus 155 ------~~~~~--~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~-~~gf~v~vGG~~g~~-------p~~g~~l~ 218 (928)
.+|.+ .+||+||||+||||+++|+.++++||||+++.. +| ..||+|++||++|++ |++|+.+.
T Consensus 195 ~~~~~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~~~DiG~~~~~~-~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~ 273 (569)
T PRK13504 195 TFSGTEEEPIYGKTYLPRKFKIAVAVPPDNDVDVYANDLGFVAIAE-NGKLVGFNVLVGGGMGMTHGDKETYPRLADELG 273 (569)
T ss_pred cccccccCcccccCCCCCceEEEEEcCCccccCceecceEEEEEec-CCcEEEEEEEEEccccCCCCCCCCCCccccccC
Confidence 13333 369999999999999999999999999999875 44 369999999999975 88898885
Q ss_pred ccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhhhhcccCCCC
Q psy3753 219 KFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKY 298 (928)
Q Consensus 219 ~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 298 (928)
+++++++++++++++++|+++|+|.+|+++||+++++++|.++|++.++++++.... ++.
T Consensus 274 -~v~~e~v~~~~~ai~~~~~~~G~r~~r~~aRlk~lv~~~G~e~f~~~v~~~~~~~~~------------------~~~- 333 (569)
T PRK13504 274 -YVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYTLERVGLDWFKAEVERRAGKKLE------------------PAR- 333 (569)
T ss_pred -ccCHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHhHHHHHHHHHHHhcCccC------------------CCC-
Confidence 899999999999999999999999999999999999999999999999887653211 000
Q ss_pred cCCCcchhhhHhhhccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHH----HHHHHHHHHHHhCCCcEEec
Q psy3753 299 KTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSE----QMNFIANLADHYSFSELRVT 374 (928)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~----qlr~La~ia~~~g~g~irlT 374 (928)
+.+. ....++ .|+++|+ +|+|+|+++++. |+++++ ||+.|+++|++|| +.||+|
T Consensus 334 -~~~~---------~~~~~~-----~G~~~q~-~G~~~v~v~vp~-----Grl~~~~~~~~l~~La~iA~~yg-~~irlT 391 (569)
T PRK13504 334 -PYEF---------TGRGDR-----LGWVEGI-DGKWHLTLFIEN-----GRIKDYPGRPLKTGLREIAKIHK-GDFRLT 391 (569)
T ss_pred -CCCc---------cCccce-----eEEEecC-CCcEEEEEEecC-----EEecCCCcHHHHHHHHHHHHHhC-CEEEEe
Confidence 0000 001122 2556665 689999998855 999999 9999999999999 799999
Q ss_pred cCCCEEEccCCcCCHHHHHHHHHHCCCCCCCc-c-cccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCC-CCC
Q psy3753 375 HTQNIVLSDVTKDNLFNLWTEIKQYGLSESNI-N-LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRN-IGK 449 (928)
Q Consensus 375 ~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~-~-~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~-~~k 449 (928)
++|||+|++|+.++++++.+.|++.|+.+.+. + .+++++||+|+++|++++++|+.++..|.+++. .....+ +.+
T Consensus 392 ~~Qnl~l~~i~~~~~~~l~~~L~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~~~~l~~~~ 471 (569)
T PRK13504 392 ANQNLIIANVPPSDKAKIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLSDEH 471 (569)
T ss_pred CCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 99999999999999999999999999987664 3 489999999999999999999987666666554 111112 358
Q ss_pred eEEEEecCCCCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcccccc
Q psy3753 450 ISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCK 529 (928)
Q Consensus 450 ~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR 529 (928)
++||||||||+|++|+++||||+|.. ..+|+|++||+.+ ++++|+.+...++.++++++++++++.|++++.+.|+
T Consensus 472 i~I~vSGCpn~Ca~~~iaDIG~vG~~---~~~y~i~lGG~~~-~~~~~~~~~~~v~~~~v~~~l~~ll~~y~~~~~~~E~ 547 (569)
T PRK13504 472 IVIRMTGCPNGCARPYLAEIGLVGKA---PGRYNLYLGGSFN-GTRLPKMYRENITEEEILATLDPLLGRWAKEREPGEG 547 (569)
T ss_pred eEEEEeCCcccccccccCcEEEEecC---CCeEEEEECCCCC-CCccchHhhcCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999964 3579999999985 5789999888899999999999999999999999999
Q ss_pred cccccceeehhh
Q psy3753 530 IIKNDTIVNDNW 541 (928)
Q Consensus 530 ~~k~~~i~r~g~ 541 (928)
+ ++.+.|.++
T Consensus 548 f--~~~~~R~g~ 557 (569)
T PRK13504 548 F--GDFVIRAGI 557 (569)
T ss_pred H--HHHHHHcch
Confidence 9 999999888
No 6
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=8.9e-82 Score=741.89 Aligned_cols=465 Identities=24% Similarity=0.397 Sum_probs=398.0
Q ss_pred CCCCHHHHhhccccceeeeec--C----------eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEccc
Q psy3753 29 NELSEEEFIVLRLQNGLYLQR--Y----------AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWI 96 (928)
Q Consensus 29 ~~~~~~~~~~~~~~~G~~~q~--~----------~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi 96 (928)
..+++++.+.++ ++|+|+|+ + .||+|+|+|+|+||++||+.|+++|++||+|++|||||||||||||
T Consensus 32 ~~~~~~d~~~lK-~~G~y~q~~r~~r~~~~~~~~~fM~RiriPgG~lt~~q~~~ia~ia~~yg~g~~~iTtRq~iql~gi 110 (577)
T TIGR02042 32 THFNEDAVQILK-FHGSYQQDNRDNRGKGQEKDYQFMLRTKNPGGYVPPQLYLTLDDLADEYGNGTLRATTRQTFQLHGI 110 (577)
T ss_pred cCCChhHHHHHh-heeeeeecCccccccccCccceEEEEEecCCcccCHHHHHHHHHHHHHhCCCcEEEEcccceEeCCC
Confidence 478999998555 69999984 2 7999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcc-cccChHHHHHHHHHHhc---------------------
Q psy3753 97 KLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFD-EIIDTRPYAEILRQWST--------------------- 154 (928)
Q Consensus 97 ~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~-~~~D~~~la~~l~~~~~--------------------- 154 (928)
+.+++++++++|.++|+++.++|||++|||++||+ +.|.. +..|+.++|.++.+.|.
T Consensus 111 ~~~~~~~~~~~l~~~~l~t~~a~gd~~RNV~~~P~-~~~~~~~~~~~~~~a~~i~~~~~p~t~a~~e~~ld~~~~~~~~~ 189 (577)
T TIGR02042 111 LKKNLKTVISTIVKNLGSTLGACGDLNRNVMAPPA-PFRKRPEYEFAREYADNIADLLTPQSGAYYELWLDGEKVMSAEP 189 (577)
T ss_pred CHHHHHHHHHHHHHhCCCceeccCCCCCCeecCCC-ccccchhHHHHHHHHHHHHHhhcccccchhheeccccccccccc
Confidence 99999999999999999999999999999999997 56666 78899999998877531
Q ss_pred --------------------cCCcc--ccCCCceEEEEEecCCCcccccccceEEEEEEecCCe-eeEEEEEcccCCCC-
Q psy3753 155 --------------------FHPEF--AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGK-IGFCVIVGGGMGRT- 210 (928)
Q Consensus 155 --------------------~~~~~--~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~-~gf~v~vGG~~g~~- 210 (928)
.+|.| .+|||||||+||||+.+|+.++++||||++..+.+|+ .||+|++|||+|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPRKFKi~vsg~~~~~~~~~~nDlgf~a~~~~~g~~~Gf~v~vGGglg~~~ 269 (577)
T TIGR02042 190 DPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQDIGLVVVSNERGELEGFNIYVGGGMGRTH 269 (577)
T ss_pred chhhhhhhhcccccccccCCccccccccCCCCCceEEEEcCCCCcccceecceEEEEEEeCCCcEeeEEEEEecccCCCC
Confidence 12334 4799999999999999999999999999998864343 69999999999987
Q ss_pred ------CcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHH
Q psy3753 211 ------PIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284 (928)
Q Consensus 211 ------p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~ 284 (928)
|++|..++ |++++++++++++++++|+++|+|+||+++||+++|+++|.++|+++++++++......
T Consensus 270 ~~~~t~p~~a~~l~-~v~~e~v~~~~~av~~~~rd~G~R~nR~~aRlk~li~~~G~e~f~~~ve~~~~~~~~~~------ 342 (577)
T TIGR02042 270 NKEETFARLADPLG-YVPKEDIYYAVKAIVATQRDYGDRDDRRHARMKYLISDWGIEKFREVVEQYFGKKIAPV------ 342 (577)
T ss_pred CCccccchhccccC-cCCHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHCHHHHHHHHHHHhccccCCc------
Confidence 56888885 89999999999999999999999999999999999999999999999999876422110
Q ss_pred HHHhhhhcccCCCCcCCCcchhhhHhhhccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHH---HH-HHHH
Q psy3753 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSE---QM-NFIA 360 (928)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~---ql-r~La 360 (928)
+. .+. ....++. |+++|+ +|.|++++++++ |+++++ ++ +.|+
T Consensus 343 -----------~~---~~~---------~~~~d~~-----G~~~q~-dG~~~v~l~vp~-----Grl~~~~~~~l~~~La 388 (577)
T TIGR02042 343 -----------RE---LPE---------FEYKDYL-----GWHEQG-DGKWFLGLHIDS-----GRVKDDGNWQLKKALR 388 (577)
T ss_pred -----------cc---CCc---------ccccccc-----eEEECC-CceEEEEEEecC-----ceecCCchHHHHHHHH
Confidence 00 000 0111233 445555 799999999865 999996 54 7999
Q ss_pred HHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCc-c-cccceeccCCcccccccccchHH----HHHH
Q psy3753 361 NLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNI-N-LLTDIICCPGGDFCSLANTKSLP----IAKN 434 (928)
Q Consensus 361 ~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~-~-~~r~v~aC~G~~~C~~a~~dt~~----la~~ 434 (928)
+||++||. .+|+|++|||+|+||+.++++++.+.|++.||.+..+ + .+++++||+|.++|++++++|.. ++..
T Consensus 389 eIA~~yg~-~irlT~~Qnl~l~~V~~~~~~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~ 467 (577)
T TIGR02042 389 EIVEKYNL-PVRLTPNQNIILYDIQPEWKRAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKR 467 (577)
T ss_pred HHHHHhCC-CEEEcCCCCeEECCCCHHHHHHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHH
Confidence 99999986 7999999999999999999999999999999987543 3 47889999999999999999985 4555
Q ss_pred HHHHhc-ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHH
Q psy3753 435 IMKYFS-KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDII 513 (928)
Q Consensus 435 L~~~~~-~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i 513 (928)
|.+.+. ..++ +.|+|||||||||+|++|+++||||+|.. ..+|+|++||+.+ ++++|+.+..+++.+++++++
T Consensus 468 l~~l~~~~~l~--~~~i~I~vSGCpn~Ca~p~iaDIG~vG~~---~~~y~l~lGG~~~-~~rla~~~~~~vp~~ei~~vl 541 (577)
T TIGR02042 468 IRALLEKVGLP--DEHFVVRMTGCPNGCARPYMAELGFVGSA---PNSYQVWLGGSPN-QTRLARPFIDKLKDGDLEKVL 541 (577)
T ss_pred HHHHHHhcCCC--CCCcEEEEECCCccccCCCcCcEEEECCC---CCcEEEEECCCCC-cccchhHHhcCcCHHHHHHHH
Confidence 555443 2222 35899999999999999999999999964 3579999999886 578999988899999999999
Q ss_pred HHHHHHHHHhcccccccccccceeehhhhhhh
Q psy3753 514 NRILKVYLRRCYLMCKIIKNDTIVNDNWKMLY 545 (928)
Q Consensus 514 ~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~ 545 (928)
+++++.|++++++.||+ ++.+.|.++..+-
T Consensus 542 ~~ll~~y~~~r~~~E~f--~~fi~R~G~e~~~ 571 (577)
T TIGR02042 542 EPLFVHFKQSRQSGESF--GDFCDRVGFDALR 571 (577)
T ss_pred HHHHHHHHHhccCCCCH--HHHHHHcCcHHHH
Confidence 99999999999999999 8888888876654
No 7
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-82 Score=720.66 Aligned_cols=493 Identities=37% Similarity=0.620 Sum_probs=442.9
Q ss_pred CCcCCccCHHHHHHHH----HHHHHHHHHHhcCCCCHHHHhhccccceeeeec--CeeEEEEEcCCCccCHHHHHHHHHH
Q psy3753 1 MYHYDKYDHQLVKERV----IQYRDQVRRRLSNELSEEEFIVLRLQNGLYLQR--YAYMLRIAIPYGMLSSKQMRMLSYI 74 (928)
Q Consensus 1 ~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~--~~~~vRir~p~G~lt~~ql~~la~i 74 (928)
||.++..+.++++++- .+|++.+.+++.+++++++|+.++.++|+|.|. ..||+|+|+|+|.||++||++|+++
T Consensus 1 ~~~~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~q~~~~~~MlRvriPgG~ls~~q~r~l~~i 80 (510)
T COG0155 1 MAPYDPLDNERLKAESNFLRGTIEDQLSDRLSGGLCEDDFRPLLKFDGLYLQEPDHAFMLRVRIPGGILSPKQLRALADI 80 (510)
T ss_pred CCCCCCcCHHHHhhhhhhhHHHHHHHhhhccccCCCHHHHHHHHhhcceeecccccceeEEEecCCCccCHHHHHHHHHH
Confidence 7888888855555443 467888888888999999999878889999994 4999999999999999999999999
Q ss_pred HHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhc
Q psy3753 75 AKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWST 154 (928)
Q Consensus 75 A~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~ 154 (928)
|++||+|++|||||||||||||..+++++++++|.++||.+.++|||++|||+++|++|.+++++.|+++++..++.++.
T Consensus 81 A~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l~~vgl~ti~~~gd~~Rnv~~~P~ag~~~~ei~D~r~~~~~~~~~l~ 160 (510)
T COG0155 81 ARRYGRGTIELTTRQNIQFHGIRKKDVPEILAELASVGLHTIATAGDVARNVTGDPLAGLDADEIADPRPLAEILRIWLD 160 (510)
T ss_pred HHHhCCCeEEEeecccceecccccccHHHHHHHHHHcCCcchhhccccccceecCcccccchhhcccchhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCC-CcccccccccCChHHHHHHHHHH
Q psy3753 155 FHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRT-PIIGQIICKFLPWKHILTYIEAI 233 (928)
Q Consensus 155 ~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~-p~~g~~l~~~v~~~e~~~~~~ai 233 (928)
.++++..|||||||+|+||+.+|+..+++||+|++..+.++..||+|+|||++|++ |..+..+..++++++++++++++
T Consensus 161 ~~~~~~~LPRKFkiav~g~~~~~v~~~~~Di~~~a~~~~~~~~Gf~v~VGGglg~~~~~~~~~~~~~v~~~~~~~~~~ai 240 (510)
T COG0155 161 GEKGFAYLPRKFKIAVDGGPDNDVDVLINDIGFVAIKENDGLLGFNVLVGGGLGRTHPKTAPRLAEFVPPEDVLEVVEAI 240 (510)
T ss_pred CccchhcCCcceEEEEecCcccchhhhccceeEEEecccCCccceEEEEccccccCCcchhhHHhhccCHHHHHHHHHHH
Confidence 88899999999999999999999999999999999987577889999999999998 99999999999999999999999
Q ss_pred HHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhhhhcccCCCCcCCCcchhhhHhhhc
Q psy3753 234 LRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCK 313 (928)
Q Consensus 234 ~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (928)
+.+|+++|+|+||+++|++++++++|.|+|+++++++++.... ++.... ..
T Consensus 241 v~~~~d~G~R~nr~~aR~k~lv~~~G~E~f~~~ve~~~g~~~~------------------~~~~~~-----------~~ 291 (510)
T COG0155 241 VRVYRDYGRRANRKKARLKYLVEALGVEKFRREVEPRLGKPFE------------------PARPRE-----------FT 291 (510)
T ss_pred HHHHHhcchhhhhhhhhHHHHHHHhChHHHHHHHHHhhCcccC------------------cccccc-----------cc
Confidence 9999999999999999999999999999999999998874321 111000 01
Q ss_pred cCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHH
Q psy3753 314 HNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLW 393 (928)
Q Consensus 314 ~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~ 393 (928)
.+.++.+| ++|+ +|.+++++.++. |+++++.+..|++.++++++|++|+|++|||+|.+|+.++++.+.
T Consensus 292 ~~~d~~Gw-----~~~~-~g~~~~g~~v~~-----Grl~~~~~~~l~~~~~~~~~~eiRlT~~QnLii~~v~~~~~~~i~ 360 (510)
T COG0155 292 GNGDHIGW-----VPQK-DGLWHLGLAVPN-----GRLKAEGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEAELEAIL 360 (510)
T ss_pred CCCCceeE-----EEcC-CCcEEEEEecce-----eeecCccchHHHHHHHHHhhccEEeccCcceEecCCCHHHHHHHH
Confidence 23344444 5566 899999988755 999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhc-ccCcCCCCCeEEEEecCCCCCcccccccEEEE
Q psy3753 394 TEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS-KDDQRNIGKISLNISGCINSCGHHHIGNIGIL 472 (928)
Q Consensus 394 ~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~-~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~i 472 (928)
+.+.+.||.+..++.+++++||+|.++|.+++++|..++..|.+++. ....+.. .++||||||||+|++|++++|||+
T Consensus 361 ~~l~~~Gl~t~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~~~~~~~-~i~i~isGCpn~Ca~~~~a~Igl~ 439 (510)
T COG0155 361 RILAALGLVTAPSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDLLDKHGL-PITLHISGCPNGCGRPHLAEIGLV 439 (510)
T ss_pred HHHHHcCCCCCCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhhhcccCC-ceeEEeccCcchhcCcccCceeEe
Confidence 99999999998888899999999999999999999999999999997 2211211 589999999999999999999999
Q ss_pred eEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcccccccccccceeehh
Q psy3753 473 GLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDN 540 (928)
Q Consensus 473 g~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g 540 (928)
|+.+ .+|+|++||+ ......++.+.+.++.+++.+.++.++..|.+++...|++ ++...|.+
T Consensus 440 G~~~---~~y~v~lGG~-~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~R~~gE~f--~d~~~R~g 501 (510)
T COG0155 440 GKAK---GGYQVYLGGG-ADGTRGGKLYGENVPAEEILDAIDRLIGRYAKERHEGESF--GDFVIRAG 501 (510)
T ss_pred eccC---cceEEEecCC-CCCCccceeecCCCCHHHHHHHHHHHHHHHHhccCCCccH--HHHHHHhC
Confidence 9764 3599999993 3467788888889999999999999999999999999999 88777766
No 8
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=1.4e-80 Score=731.42 Aligned_cols=465 Identities=23% Similarity=0.420 Sum_probs=397.4
Q ss_pred hcCCCCHHHHhhccccceeeeecC----------------eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCc
Q psy3753 27 LSNELSEEEFIVLRLQNGLYLQRY----------------AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQN 90 (928)
Q Consensus 27 ~~~~~~~~~~~~~~~~~G~~~q~~----------------~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~ 90 (928)
..+.+++++++.++ ++|+|.|++ .||+|||+|+|+||++|+++||++|++||+|++|||||||
T Consensus 22 ~~~~~~~~~~~~lk-~~G~y~q~~~~~~~~~~~~~~~~~~~fmvRvripgG~lt~~Ql~~la~ia~~yg~g~i~lTtRQn 100 (541)
T TIGR02041 22 LTGGFSGDDFQLIK-FHGMYQQDDRDLRAERAEQKLEPAYQFMLRCRLPGGVITPKQWLAIDKFAREYGNGSIRLTTRQT 100 (541)
T ss_pred hhcCCCHHHHHHHH-HheeeeeccccchhhhcccccCCcceeEEEEecCCcEECHHHHHHHHHHHHHhCCCeEEEecccc
Confidence 36889999998777 699999973 6999999999999999999999999999999999999999
Q ss_pred eEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhcc---------------
Q psy3753 91 IQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTF--------------- 155 (928)
Q Consensus 91 iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~--------------- 155 (928)
||||||+.+++++++++|.++||.+.++|||.+|||+ |++...|.....|+.++|++|.+.+..
T Consensus 101 iQl~gI~~~~l~~v~~~L~~~GL~t~~a~gd~~RnV~-c~~~p~~~~~~~e~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 179 (541)
T TIGR02041 101 FQFHGILKRNLKAVHQAIHSAGLDSIATCGDVNRNVL-CTSNPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKV 179 (541)
T ss_pred eEEcCCChhHHHHHHHHHHHcCCCccccCCCCCCcee-CCCCcccCCCHHHHHHHHHHHHHHhccCchhHHHHhhhcccc
Confidence 9999999999999999999999999999999999998 666667777778888999888765422
Q ss_pred ------CCcc--ccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCC-------Cccccccccc
Q psy3753 156 ------HPEF--AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRT-------PIIGQIICKF 220 (928)
Q Consensus 156 ------~~~~--~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~-------p~~g~~l~~~ 220 (928)
+|.+ .+||+||||+||||+++|+.+.++||||+++..++...||+|++||++|++ |++|..+. +
T Consensus 180 ~~~~~~~~~~~~~~LPrKfKi~isg~~~~~~~~~~~DiG~~a~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~ 258 (541)
T TIGR02041 180 AGTEEVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGFVAIADNGKLIGFNVLIGGGLGMTHGNKATYPRLANEIG-F 258 (541)
T ss_pred cCCcccCccccccCCCCCcEEEEECCCCccccccccceEEEEEEeCCcEEEEEEEEeccccCCCCCcCCCCccccccC-C
Confidence 2332 469999999999999999999999999999887333469999999998863 88999885 9
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhhhhcccCCCCcC
Q psy3753 221 LPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKT 300 (928)
Q Consensus 221 v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 300 (928)
++++++++++++++++|+++|+|.+|+++||+++|+++|.++|+++++++++.. +.+. .++.+.
T Consensus 259 v~~e~v~~~~~ai~~~~~~~g~r~~r~~aRlk~li~~~G~e~f~~~v~~~~~~~------l~~~---------~~~~~~- 322 (541)
T TIGR02041 259 IPPEHTLAVAEAIVTTQRDFGNRTDRKNARTKYTIDRMGLDTFKAEVERRAGIT------LEPA---------RPYVFT- 322 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHhCHHHHHHHHHHHhCCC------CCCC---------CCcccc-
Confidence 999999999999999999999999999999999999999999999998775421 1000 000000
Q ss_pred CCcchhhhHhhhccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCH----HHHHHHHHHHHHhCCCcEEeccC
Q psy3753 301 LPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITS----EQMNFIANLADHYSFSELRVTHT 376 (928)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~----~qlr~La~ia~~~g~g~irlT~~ 376 (928)
...++.+|. +| ++|+|+++++++ +|++++ .+++.|+++|+ +|++.||+|++
T Consensus 323 -------------~~~~~~g~~-----~~-~~G~~~v~v~~p-----~G~l~~~~~~~~l~~la~iA~-~~~~~irlT~~ 377 (541)
T TIGR02041 323 -------------HRGDRYGWV-----KG-IDGNWHLTLFIE-----SGRIADYPDKPLMTGLREIAK-IHKGDFRITPN 377 (541)
T ss_pred -------------ccccccCee-----cC-CCCcEEEEEEec-----CceeecCccHHHHHHHHHHHH-hcCCeEEEeCC
Confidence 112234443 33 579999998875 499995 48999999997 56699999999
Q ss_pred CCEEEccCCcCCHHHHHHHHHHCCCCCCCc-ccccceeccCCcccccccccchHHHHHHHHHHhc---ccCcCCCCCeEE
Q psy3753 377 QNIVLSDVTKDNLFNLWTEIKQYGLSESNI-NLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS---KDDQRNIGKISL 452 (928)
Q Consensus 377 q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~-~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~---~~~~~~~~k~ki 452 (928)
|||+|++|+.++++++.+.|.+.|+.++.. ..+++++||||+++|+++++||+.++..|.+++. ......+.++||
T Consensus 378 Qnl~l~~v~~~~~~~l~~~l~~~gl~~~~~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~~~~~~~~~~~I 457 (541)
T TIGR02041 378 QNLIIANVPEGGKAKIEALARQYGLIDGKVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKHGLADEEIVL 457 (541)
T ss_pred CCEEEcCCCHHHHHHHHHHHHHcCCCCCCCCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 999999999999999999999999988544 4589999999999999999999999887776654 111112348999
Q ss_pred EEecCCCCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhccccccccc
Q psy3753 453 NISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCKIIK 532 (928)
Q Consensus 453 ~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k 532 (928)
|||||||+|++|+++||||+|.. ..+|+|++||+.+ ++++|+.+...+|.+++++++++++++|++++++.||+
T Consensus 458 ~iSGCpn~Ca~~~~adIG~~G~~---~~~y~l~lGG~~~-~~~~g~~~~~~v~~~~v~~~v~~ll~~y~~~~~~~E~f-- 531 (541)
T TIGR02041 458 RMTGCPNGCGRPYLAEIGLVGKA---PGRYNLMLGGNRR-GQRLPRLYRENITEPEILAELDELLGRYAAERKPGEGF-- 531 (541)
T ss_pred EEecCCccccccccCcEEEEEec---cceEEEEECCCCC-CCchhHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCH--
Confidence 99999999999999999999964 2469999999974 78899999999999999999999999999999999999
Q ss_pred ccceeehhh
Q psy3753 533 NDTIVNDNW 541 (928)
Q Consensus 533 ~~~i~r~g~ 541 (928)
++.+.|.++
T Consensus 532 ~~~~~R~g~ 540 (541)
T TIGR02041 532 GDFLIRTGI 540 (541)
T ss_pred HHHHHhcCC
Confidence 988888876
No 9
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=100.00 E-value=1.3e-71 Score=633.07 Aligned_cols=372 Identities=20% Similarity=0.260 Sum_probs=327.8
Q ss_pred CeeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeC
Q psy3753 50 YAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSD 129 (928)
Q Consensus 50 ~~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~c 129 (928)
++||+|||+|+|+||++||++||++|++||+|.+|||||||||||||+.+ +++++++|.++||.+.+++||.+|||++|
T Consensus 16 dg~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l~~~GL~~~~~~g~~~Rnv~~c 94 (390)
T TIGR02435 16 DGLLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQALLAAGLGAAGAAADDIRNIEVS 94 (390)
T ss_pred CeeEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHHHHCCCCCccccCCcccccccC
Confidence 48999999999999999999999999999999999999999999999999 99999999999999989999999999999
Q ss_pred CCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCC
Q psy3753 130 ELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGR 209 (928)
Q Consensus 130 p~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~ 209 (928)
|+++.|+.+++||+++|++|.+.|..++.+.+||+||||+||||+++|+.++++||||++..+ +++.||.|++||+.+.
T Consensus 95 p~~g~~~~~~~dt~~la~~l~~~l~~~~~~~~LPrKfki~vsgc~~~c~~~~~~DIG~~~~~~-~~~~gf~v~vGG~~~~ 173 (390)
T TIGR02435 95 PLAGIDPGEIADTRPLAAELRAALENERALLELPPKFSVAIDGGGRLVLLGDTADVRLQALTT-GAGVAWVVSLAGISTS 173 (390)
T ss_pred ccccCCCccccchHHHHHHHHHHHhcChhhhcCCCceEEEEECCCccccCCCCCCEEEEEEec-CCEEEEEEEEecCCCC
Confidence 999999999999999999999999988888899999999999999999999999999999886 4556899999996543
Q ss_pred CCcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhh
Q psy3753 210 TPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRV 289 (928)
Q Consensus 210 ~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~ 289 (928)
... + .+++++++++++++++++|+++++ ++|++++++++|.|+|++++++....... . .
T Consensus 174 ~~~----~-~~v~~~~v~~~v~av~~~~~~~g~-----~aR~k~li~~~g~e~~~~~v~~~~~~~~~-~-----~----- 232 (390)
T TIGR02435 174 ARS----L-VTVAPDAAVPVAVALLRVFVELGG-----AARGRDLDDAFLFALALELVEDSRPLIPD-A-----A----- 232 (390)
T ss_pred CCc----e-EEeCHHHHHHHHHHHHHHHHHhCc-----ccHHHHHHHHhHHHHHHHHHHhccccCCC-c-----c-----
Confidence 222 2 579999999999999999999986 59999999999999999999873210000 0 0
Q ss_pred hhcccCCCCcCCCcchhhhHhhhccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCC
Q psy3753 290 KKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFS 369 (928)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g 369 (928)
.+... ......|.+.|+++|++++ |+|+++++ +|++++++|+.|+++|++||+|
T Consensus 233 -----~~~~~---------------~~~~~~~~~~G~~~q~~~~-~~v~~~~p-----~G~i~~~~l~~la~ia~~~g~~ 286 (390)
T TIGR02435 233 -----EGEAP---------------RPAVDAAAPLGLHPQGDAG-VTLGAGLA-----LGQLTAAQLRGLAQLAQALGDG 286 (390)
T ss_pred -----ccccc---------------cCcccccCCCceeecCCCC-eEEEEecC-----ccccCHHHHHHHHHHHHHhCCC
Confidence 00000 0000123356888999877 89998774 5999999999999999999999
Q ss_pred cEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCC
Q psy3753 370 ELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGK 449 (928)
Q Consensus 370 ~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k 449 (928)
.||+|+||||+|++|+.++++++.++|.+.|+.+.+.+++.+++||+|+++|+.+++||+.++.+|.++|.... +
T Consensus 287 ~irlT~~Q~l~i~~i~~~~~~~~~~~l~~~gl~~~~~~~~~~v~aC~G~~~C~~~~~~t~~~a~~l~~~~~~~~-----~ 361 (390)
T TIGR02435 287 DLRLTPWRALLVLGLPPERADAAQRALAALGLVTSASDPRARIIACTGAPGCASALADTRADAEALAAYCEPTA-----P 361 (390)
T ss_pred eEEEcCCcceEEcCCCHHHHHHHHHHHHHCCCCcCCCCCeeeEEECCCccccccchhhHHHHHHHHHHHhcccC-----C
Confidence 99999999999999999999999999999999988877888899999999999999999999999999875111 3
Q ss_pred eEEEEecCCCCCcccccccEEEEeEe
Q psy3753 450 ISLNISGCINSCGHHHIGNIGILGLN 475 (928)
Q Consensus 450 ~ki~iSGCpn~C~~~~~aDig~ig~~ 475 (928)
+|||||||||+|++|+++||||+|..
T Consensus 362 ~~i~vSGC~n~C~~~~~adiG~~G~~ 387 (390)
T TIGR02435 362 ITVHLSGCAKGCAHPGPAAITLVAAG 387 (390)
T ss_pred cEEEEeCCcccccCCCCCCEEEEecC
Confidence 89999999999999999999999964
No 10
>KOG0560|consensus
Probab=100.00 E-value=2.9e-65 Score=548.42 Aligned_cols=471 Identities=25% Similarity=0.461 Sum_probs=393.3
Q ss_pred CCCCHHHHhhccccceeeeecC---------eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCC
Q psy3753 29 NELSEEEFIVLRLQNGLYLQRY---------AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLK 99 (928)
Q Consensus 29 ~~~~~~~~~~~~~~~G~~~q~~---------~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e 99 (928)
|.+++.+.|-++ ++|+|+|.| .||+|.|+|+|..|++|++++++++++||+|.++|||||++|+|||-..
T Consensus 107 ~~v~esdvqL~K-fhGiy~qddRd~r~gr~y~FM~R~klP~Gvtt~qq~l~lddls~k~G~gtlklTTRqtfQihGVlkk 185 (638)
T KOG0560|consen 107 GSVDESDVQLIK-FHGIYHQDDRDIRYGRSYSFMMRAKLPNGVTTPQQWLALDDLSDKYGNGTLKLTTRQTFQIHGVLKK 185 (638)
T ss_pred CCcchhHHHHHH-HhhhhhhcchhhhcchhhhhhheecCCCCCCCHHHHHHHHHHHHhhCCceeeeeeeceeeeeeeehh
Confidence 334566665434 599999932 5999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHcCCccccccCCcccceEe--CCCCccCcccccChHH-HHHHH-------HHHhc------------cCC
Q psy3753 100 ESPDILENLASVEMHAIQTSGNCIRNITS--DELSGVSFDEIIDTRP-YAEIL-------RQWST------------FHP 157 (928)
Q Consensus 100 ~~~~~~~~L~~~GL~~~~~~gd~vRni~~--cp~ag~~~~~~~D~~~-la~~l-------~~~~~------------~~~ 157 (928)
+++.+++.+.+++|++.++|||..|||++ .|..+.++..++|+.. ++..+ .+... +++
T Consensus 186 nlk~~lrgi~kv~ltTL~a~gD~~RNv~~sa~P~~~kd~~qi~dt~k~is~~llP~T~~y~e~w~e~~q~ve~rkv~Gn~ 265 (638)
T KOG0560|consen 186 NLKETLRGIAKVGLTTLGACGDVNRNVVGSANPINGKDHEQIVDTAKNISALLLPYTNLYHEFWTEGPQVVEARKVHGNA 265 (638)
T ss_pred hhHHHHHHHHHHHhhhhhhhccccccccccCCCccccCHHHHHHHHHHHhhhhCCccchHHHHhhcCcHHhhhhccCCCc
Confidence 99999999999999999999999999999 7889999999998843 22222 11111 222
Q ss_pred cc--------ccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCC-------CcccccccccCC
Q psy3753 158 EF--------AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRT-------PIIGQIICKFLP 222 (928)
Q Consensus 158 ~~--------~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~-------p~~g~~l~~~v~ 222 (928)
.+ ..||||||++|.+.|.+.++.+++||+++++...++..||+|+||||+|++ |++|..+ .+|+
T Consensus 266 ~~d~epiygptyLPRKfkv~Vavp~dn~vd~~tnDva~v~i~end~~~GfNv~VGGgmgtthr~ekt~prla~~~-gyVp 344 (638)
T KOG0560|consen 266 DVDNEPIYGPTYLPRKFKVCVAVPPDNDVDVLTNDVALVAINENDGVFGFNVLVGGGMGTTHRNEKTYPRLAELD-GYVP 344 (638)
T ss_pred ccccccccCcccCccceeEEEecCCCccccccccceeEEEEeccCCceeeEEEeccccCCcccchhhcccccccc-cccc
Confidence 22 349999999999999999999999999999986577889999999999975 8888766 6999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhhhhcccCCCCcCCC
Q psy3753 223 WKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLP 302 (928)
Q Consensus 223 ~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 302 (928)
.|+++++++||+.+++++|+|.||+++||+++|+.||.+.|++.++++++..++.. ..+.
T Consensus 345 tddIl~~vkaIli~qRd~G~R~nRk~aRmkylid~lGVe~Fr~~VEe~~g~KfE~~------------------r~~~-- 404 (638)
T KOG0560|consen 345 TDDILPLVKAILIVQRDHGDRGNRKHARMKYLIDELGVEGFRTKVEEYMGKKFEPG------------------RSEP-- 404 (638)
T ss_pred hhhhHHHhhhheeeehhccCccchhhhhhhhhHHhhhhHHHHHHHHHHhcccCCcC------------------cCCc--
Confidence 99999999999999999999999999999999999999999999999998543311 0000
Q ss_pred cchhhhHhhhccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEc
Q psy3753 303 KNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLS 382 (928)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~ 382 (928)
...+...++.+| |+|. +|.+.+++.++. |++.+.++...+..+.+|++++++||+.|||+|.
T Consensus 405 -------~~~we~~dyfGw-----h~q~-~gl~f~glhVe~-----GRve~l~~ktglRev~e~~~~e~rlT~nQniii~ 466 (638)
T KOG0560|consen 405 -------NKQWERRDYFGW-----HKQE-EGLSFVGLHVEN-----GRVEALDMKTGLREVAEYGSGELRLTVNQNIIIP 466 (638)
T ss_pred -------chhhcccccccc-----ccCC-CCceEEEEEccc-----cccccchhhhHHHHHHHhhcceeeecccccEEec
Confidence 011223345555 4555 799999999976 9999999999888888889999999999999999
Q ss_pred cCCcCCHHHHHHHHHHCCCCCCC-cccccceeccCCcccccccccchHH----HHHHHHHHhc-ccCcCCCCCeEEEEec
Q psy3753 383 DVTKDNLFNLWTEIKQYGLSESN-INLLTDIICCPGGDFCSLANTKSLP----IAKNIMKYFS-KDDQRNIGKISLNISG 456 (928)
Q Consensus 383 gi~~~~~~~~~~~L~~~Gl~~~~-~~~~r~v~aC~G~~~C~~a~~dt~~----la~~L~~~~~-~~~~~~~~k~ki~iSG 456 (928)
+|.++..+.+.++|...+++... ++.+.+.+||+|.++|.+|+++|.. +..++++.|. ..+++. .+.++++|
T Consensus 467 nv~te~~~~i~~~la~~~l~npefs~L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve~~~e~vgl~~d--sIvmr~TG 544 (638)
T KOG0560|consen 467 NVETEKTEAILQELALYKLDNPEFSGLRLSSVACVGLPTCGLAIAESERRLPKIITEVERMFEEVGLPRD--SIVMRMTG 544 (638)
T ss_pred ccchhhhHHHHHHHHHhccCCcchhhhhhhhhcccCCCcchhHHHHHhhchhHHHHHHHHHHHHhCCCCC--ceEEEecc
Confidence 99999999999999999988643 4567899999999999999999865 4444444444 344441 48999999
Q ss_pred CCCCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcccccccccccce
Q psy3753 457 CINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCKIIKNDTI 536 (928)
Q Consensus 457 Cpn~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i 536 (928)
|||+|++|+.+|||++|.. ...|++.+||+.- +.++.++....+..+++.++++.++..|.=.++..|-+ |+..
T Consensus 545 CPNgCsrp~vaeig~vGka---pnty~~~lgG~p~-~~~l~k~~~~~vkd~ei~~i~kpl~k~~~Lere~~E~f--gd~~ 618 (638)
T KOG0560|consen 545 CPNGCSRPWVAEIGLVGKA---PNTYNLMLGGGPV-GQRLNKLYGRIVKDSEIGEIYKPLFKRYALEREVGEHF--GDEF 618 (638)
T ss_pred CCCCCCcchhhheeecccC---CcceeeecCCcch-HHHHHHHHhccccHHHHHHHHhhhhhhhhhhHHHHHHH--HHHH
Confidence 9999999999999999943 3579999999874 45677777778899999999999999999999999999 8888
Q ss_pred eehhhhhhhhc
Q psy3753 537 VNDNWKMLYEN 547 (928)
Q Consensus 537 ~r~g~~~~~e~ 547 (928)
.|.+..+.-++
T Consensus 619 ~rvg~ek~~ee 629 (638)
T KOG0560|consen 619 IRVGIEKEEEE 629 (638)
T ss_pred Hhhcceecccc
Confidence 88887765544
No 11
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=100.00 E-value=7.3e-53 Score=442.52 Aligned_cols=210 Identities=31% Similarity=0.510 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEcChHHHHHHHHHHHhcC-CCceEEEEcCCCChHHHHHHHHHHHHHcC--CeEEEEecC
Q psy3753 697 KTVLDALNNIVTDYK-PAVFASSLAAEDMVLTDLILRNN-FDINIFTLNTGRLHSETLNMLNKIYLTYK--YKIKVYYPL 772 (928)
Q Consensus 697 ~~a~~~I~~~~~~~~-~~~vs~SGGKDS~vll~L~~~~~-~~i~vvf~DTg~efpeT~~~i~~~~~~~g--~~i~~~~p~ 772 (928)
..+.++|+++++.|. +++++|||||||+|||||+.++. ++++|||+|||.+||||++|++++.++|+ +++.++.|.
T Consensus 11 ~~~~~~l~~~~~~~~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~ 90 (226)
T TIGR02057 11 LTPQEIIAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGC 90 (226)
T ss_pred CCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCc
Confidence 457789999999875 69999999999999999999998 99999999999999999999999999999 555555554
Q ss_pred chhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcC--CcEEEeeecccccccccCCcceeecCCCCCeEEEEeC
Q psy3753 773 NSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIG--NKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPL 850 (928)
Q Consensus 773 ~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~--~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI 850 (928)
.. ...+..++|...+.. +..+||.++|++||++++++ ..+||+|+|++||..|+.++.++.+. .++.++++||
T Consensus 91 ~~-~~~~~~~~G~~~~~~---~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~Ra~~~~~~~d~-~~~~~kv~Pi 165 (226)
T TIGR02057 91 ES-EADFEAKYGKLLWQK---DIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGSARANLPVIEIDE-QNGILKVNPL 165 (226)
T ss_pred hh-HHHHHHhcCCCcccc---CHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCccccCCccccccC-CCCeEEEeeh
Confidence 33 344566788765543 35789999999999999987 56899999999999999999988765 4689999999
Q ss_pred cCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCCCCCccccccccCCCCcccccCc
Q psy3753 851 YNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLH 913 (928)
Q Consensus 851 ~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGlh 913 (928)
++||+.|||.||.+++|||||||++||+||||++||.|+..|+++|+|||+ |..|+|||||
T Consensus 166 ~~Wt~~dVw~Yi~~~~lP~npLY~~GY~siGc~~cT~~v~~~~~~R~gRw~--~~~~~eCglh 226 (226)
T TIGR02057 166 IDWTFEQVYQYLDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK--GKLKTECGIH 226 (226)
T ss_pred hhCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCcCCCCCCCCCccCccCC--CCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999996 4459999999
No 12
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=100.00 E-value=1.2e-52 Score=476.26 Aligned_cols=216 Identities=39% Similarity=0.764 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchh
Q psy3753 697 KTVLDALNNIVTDYK-PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSE 775 (928)
Q Consensus 697 ~~a~~~I~~~~~~~~-~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~ 775 (928)
..+.++|+|+++.|+ ++++++|||+|+ |||||+.+++++++|||+|||++|||||+|++++.++||++|+++.|....
T Consensus 101 ~~~~eil~~a~~~f~~~iavasSG~eds-vLlhl~~~~~~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~p~~~~ 179 (463)
T TIGR00424 101 ASPLEIMDKALEKFGNDIAIAFSGAEDV-ALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMFPDAVE 179 (463)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeccHHHH-HHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCCcch
Confidence 456799999999886 699999988886 579999999999999999999999999999999999999999999998776
Q ss_pred hhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeecccccc-cccCCcceeecCC-------CCCeEEE
Q psy3753 776 VNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSI-TRSNLVLKEKDII-------HNGIIKF 847 (928)
Q Consensus 776 ~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~-~R~~~~~~~~d~~-------~~~~~~~ 847 (928)
..++...+|.+.|+.+ +.++||.++|++||++++++.++||+|+|++||. .|+.+++++.|.. .++.+|+
T Consensus 180 ~~~~~~~~G~~~~~~~--~~~~CC~irKVePL~raL~~~~awitG~Rr~Qs~~tRa~~~~ve~d~~~~~~~~~~~~~iKv 257 (463)
T TIGR00424 180 VQALVRSKGLFSFYED--GHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLVKW 257 (463)
T ss_pred HHHHHHhcCcccCCcC--ChHHHhhHHhHHHHHHHHHhCCcEEeeeccccCccccccCCcccccccccccccCCCceEEE
Confidence 6666778898777764 4689999999999999999999999999999997 8999999987742 2348999
Q ss_pred EeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCCCCCccccccccCCCCcccccCcCC
Q psy3753 848 NPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHVL 915 (928)
Q Consensus 848 ~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGlh~~ 915 (928)
|||++||.+|||.||++|+|||||||++||.||||++||.|+..|+++|+|||||++..|||||||..
T Consensus 258 nPLa~Wt~~dVw~Yi~~~~LP~npL~~~GY~SIGC~pCT~pv~~ged~RaGRW~w~~~~k~ECGlH~~ 325 (463)
T TIGR00424 258 NPVANVEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKG 325 (463)
T ss_pred eecccCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 13
>PLN02309 5'-adenylylsulfate reductase
Probab=100.00 E-value=1.2e-52 Score=476.19 Aligned_cols=217 Identities=37% Similarity=0.761 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchh
Q psy3753 697 KTVLDALNNIVTDYK-PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSE 775 (928)
Q Consensus 697 ~~a~~~I~~~~~~~~-~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~ 775 (928)
..+.++|+|+++.|+ ++++++||++|+ |++||+.+++++++|+|+|||++|||||+|++++.++||++|+++.|+...
T Consensus 96 ~~~~eil~~a~~~~~~~ia~~~SG~ed~-vll~l~~~~~~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~P~~~~ 174 (457)
T PLN02309 96 ASPLEIMDKALEKFGNDIAIAFSGAEDV-ALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFPDAVE 174 (457)
T ss_pred CCHHHHHHHHHHHcCCCEEEEecchHHH-HHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCCcch
Confidence 345799999999885 689999977776 678999999999999999999999999999999999999999999999887
Q ss_pred hhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeecccccc-cccCCcceeecCC-------CCCeEEE
Q psy3753 776 VNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSI-TRSNLVLKEKDII-------HNGIIKF 847 (928)
Q Consensus 776 ~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~-~R~~~~~~~~d~~-------~~~~~~~ 847 (928)
..++...+|.+.|+++ +.++||.++|++||++++++.++||+|+|++||. .|+.+++++.|.. .++.+|+
T Consensus 175 ~~~~~~~~g~~~~~~~--~~~~Cc~irKVePL~raL~~~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~~~~~~~~lKv 252 (457)
T PLN02309 175 VQALVRNKGLFSFYED--GHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPGSLVKW 252 (457)
T ss_pred HHHHHHhcCccccccC--ChHHhhhhHhHHHHHHHHhhCCEEEEeeccccCccccccCCeeeecccccccccCCCCeeEE
Confidence 7777788898877764 4689999999999999999999999999999998 8999999998742 1358999
Q ss_pred EeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCCCCCccccccccCCCCcccccCcCCC
Q psy3753 848 NPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHVLD 916 (928)
Q Consensus 848 ~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGlh~~~ 916 (928)
|||++||.+|||.||++|+|||||||++||.||||++||.|+..|+++|+|||||++..|+|||||...
T Consensus 253 nPl~~Wt~~dVw~Yi~~~~lP~npL~~~GY~SIGC~pCT~pv~~g~~~RaGRw~w~~~~k~ECGlH~~~ 321 (457)
T PLN02309 253 NPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN 321 (457)
T ss_pred cccccCCHHHHHHHHHHcCCCCCcchhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCcccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999863
No 14
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=100.00 E-value=2e-51 Score=431.07 Aligned_cols=209 Identities=36% Similarity=0.594 Sum_probs=187.4
Q ss_pred HHHHHHHHHHhcC-CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhh
Q psy3753 699 VLDALNNIVTDYK-PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVN 777 (928)
Q Consensus 699 a~~~I~~~~~~~~-~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~ 777 (928)
+.++|++++++|+ +++++|||||||+|||||+.++.++++|+|+|||.+||||++|+++++++|+++|+++.|..+. .
T Consensus 1 ~~~~l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~~~~-~ 79 (212)
T TIGR00434 1 AQEIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDLSL-A 79 (212)
T ss_pred CHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCchhH-H
Confidence 3578999999998 8999999999999999999999999999999999999999999999999999999999987554 4
Q ss_pred HHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCc--EEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCH
Q psy3753 778 NYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNK--SWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLE 855 (928)
Q Consensus 778 ~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~--~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~ 855 (928)
.+..++|.+. |.. ..++||.++|+.|+.+++++.. +||+|+|++||.+|+++..++.+. ..+.++++||+|||+
T Consensus 80 ~~~~~~g~~~-~~~--~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~~R~~~~~~~~~~-~~~~~~v~PI~dWt~ 155 (212)
T TIGR00434 80 EQAAKYGDKL-WEQ--DPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGPSRANLSILNIDE-KFGILKVLPLIDWTW 155 (212)
T ss_pred HHHHhcCCCc-ccc--ChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCccccCCceeeecC-CCCcEEEeehhhCCH
Confidence 4566677443 322 3689999999999999998654 999999999999999988877664 347899999999999
Q ss_pred HHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCCCCCccccccccCCCCcccccCcC
Q psy3753 856 KDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHV 914 (928)
Q Consensus 856 ~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGlh~ 914 (928)
+|||.||.+++|||||||++||+|+||++||.|++.|+++|+|||+ |..|+|||||.
T Consensus 156 ~dVw~Yi~~~~lp~npLY~~Gy~siGc~~ct~~~~~~~~~r~gr~~--~~~~~ecg~~~ 212 (212)
T TIGR00434 156 KDVYQYIDAHNLPYNPLHDQGYPSIGDYHSTRPVKEGEDERAGRWK--GKAKTECGLHE 212 (212)
T ss_pred HHHHHHHHHcCCCCCchhhcCCCCcCCCCCCCCCCCCCCccCccCC--CCCCcCCCCCC
Confidence 9999999999999999999999999999999999999999999996 45699999995
No 15
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=100.00 E-value=5.7e-50 Score=426.80 Aligned_cols=214 Identities=42% Similarity=0.721 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHhcC-CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCch
Q psy3753 696 VKTVLDALNNIVTDYK-PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNS 774 (928)
Q Consensus 696 ~~~a~~~I~~~~~~~~-~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~ 774 (928)
..+++++|++++++|+ +++|+|||||||+|||||+.+++++++++|+|||.+||||++|++++.++||+++++++|...
T Consensus 25 ~~~~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~~ 104 (241)
T PRK02090 25 GASAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPDAS 104 (241)
T ss_pred cCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 4478899999999986 699999999999999999999999999999999999999999999999999999999999866
Q ss_pred hhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCC
Q psy3753 775 EVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWL 854 (928)
Q Consensus 775 ~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt 854 (928)
..+. ....|... ..+.....+||.++|+.||++++++..+|++|+|++||..|+..+.++.+. +.++++||++||
T Consensus 105 ~~~~-~~~~~~~~-~~~~~~~~~cc~~~K~~pl~~~~~~~~~~itG~R~~es~~R~~~~~~~~~~---~~~rv~Pi~~Wt 179 (241)
T PRK02090 105 AAEQ-EARYGGLW-EQSVEDRDECCRIRKVEPLNRALAGLDAWITGLRREQSGTRANLPVLEIDG---GRFKINPLADWT 179 (241)
T ss_pred HHHH-HHHcCCCc-cccccCHHHHHHHHhhHHHHHHHhcCCCeEEEechhhCchhccCceeeecC---CeEEEeehhhCC
Confidence 5443 33343211 122234689999999999999999887799999999999999988877652 789999999999
Q ss_pred HHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCCCCCccccccccCCCCcccccCcCCC
Q psy3753 855 EKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHVLD 916 (928)
Q Consensus 855 ~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGlh~~~ 916 (928)
++|||.|+..++|||||||++||+|+||++||.|+..|+++|+||||| ..|||||||..+
T Consensus 180 ~~dV~~Yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~gr~~~--~~~~ecg~~~~~ 239 (241)
T PRK02090 180 NEDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGRWWG--GLKKECGLHEGN 239 (241)
T ss_pred HHHHHHHHHHcCCCCChHHHcCCCCcCCCCCCCCCCCCCCccccCCCC--CCCccCCCCCCC
Confidence 999999999999999999999999999999999999999999999984 459999999754
No 16
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=100.00 E-value=4.8e-49 Score=404.43 Aligned_cols=191 Identities=49% Similarity=0.906 Sum_probs=178.3
Q ss_pred ChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCCCCccchhhhhhh
Q psy3753 719 LAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKC 798 (928)
Q Consensus 719 GGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~C 798 (928)
+|.||+|||||+.++.++++|+|+|||++||||++|++++.++||++++++.|.....+++..++|.+.|+.+. +++|
T Consensus 1 f~~~s~Vll~L~~~~~~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~--~~~c 78 (191)
T TIGR02055 1 LGAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSV--PHEC 78 (191)
T ss_pred CChHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccc--hHHH
Confidence 58999999999999999999999999999999999999999999999999988766666677789988876542 6899
Q ss_pred hhhcccchHHHhhcCCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcCCC
Q psy3753 799 CYIRKVKPLKKALIGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYL 878 (928)
Q Consensus 799 c~~~K~~Pl~~~l~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~ 878 (928)
|..+|++||.+++++.++||+|+|++||..|+.++.++.+.. .+.++++||++||.+|||.||++++|||||||++||+
T Consensus 79 c~~~K~~Pl~~~l~~~~~~i~G~Rr~Es~~R~~~~~~~~~~~-~~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~npLY~~Gy~ 157 (191)
T TIGR02055 79 CGIRKVEPLKRALAGVSAWITGLRRDQSPTRAQAPFLEIDEA-FGLVKINPLADWTSEDVWEYIADNELPYNPLHDRGYP 157 (191)
T ss_pred HHHHhHHHHHHHHhcCCEEEEEeccccCchhcCCceeeecCC-CCeEEEEecccCCHHHHHHHHHHcCCCCChHHHcCCC
Confidence 999999999999999999999999999999999998888753 4688999999999999999999999999999999999
Q ss_pred ccCcccCCCCCCCCCCccccccccCCCCcccccC
Q psy3753 879 SIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGL 912 (928)
Q Consensus 879 riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGl 912 (928)
||||++||.|+..|+++|+|||||++..||||||
T Consensus 158 siGC~~Ct~~~~~~~~~r~gRw~~~~~~~~ecg~ 191 (191)
T TIGR02055 158 SIGCEPCTRPVAPGEDPRAGRWWWEEAAKKECGL 191 (191)
T ss_pred CCCCcCCCCCCCCCCCccCcCcCCCCCCCCCCCC
Confidence 9999999999999999999999999888999998
No 17
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1e-47 Score=412.18 Aligned_cols=221 Identities=38% Similarity=0.623 Sum_probs=196.9
Q ss_pred hhhhHHHH-HHHHHHHHHhcCC-eEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEE
Q psy3753 692 LNSFVKTV-LDALNNIVTDYKP-AVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVY 769 (928)
Q Consensus 692 l~~~~~~a-~~~I~~~~~~~~~-~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~ 769 (928)
+..+...+ ..+++++++.+++ ++++|||||||+|+|||+.++.++++|+|+|||++||||++|++++.++||++++++
T Consensus 19 ~~~le~~~~~~i~~~~~~~~~~~~~~~~S~Gkds~V~l~L~~k~~~~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~ 98 (261)
T COG0175 19 LDKLEAESPIEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVY 98 (261)
T ss_pred HHHHHhcCHHHHHHHHHHHcCCCeEEEecCchhHHHHHHHHHHhcCCCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEe
Confidence 33444444 7888889998975 499999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCC--cEEEeeecccccccccCCcceeecCCCCCeEEE
Q psy3753 770 YPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGN--KSWITGQRRTQSITRSNLVLKEKDIIHNGIIKF 847 (928)
Q Consensus 770 ~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~--~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~ 847 (928)
.|.....+. ..++...+.++ ..+|||.++|+.||++++++. ++||+|+|++||.+|++.++++.+...++.+++
T Consensus 99 ~~~~~~~~~--~~~~~~~~~~~--~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~Rak~~~~~~~~~~~~~~rv 174 (261)
T COG0175 99 RPDDEVAEG--EKYGGKLWEPS--VERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPTRAKLPVVSFDSEFGESIRV 174 (261)
T ss_pred cCccchhhh--hhcccCCCCCC--cchhhhhhHhhhhHHHHHhhcCCceEEEecccccccccccCceeccccCcCCeEEE
Confidence 998776543 44454444333 345999999999999999876 899999999999999999999988755579999
Q ss_pred EeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCC-CCCccccccccCCCCcccccCcCCC
Q psy3753 848 NPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEK-GKDIRSGRWWWENSNIKECGLHVLD 916 (928)
Q Consensus 848 ~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~-~~~~r~gRW~~~~~~~~ecGlh~~~ 916 (928)
+||+|||..|||.||..+++||||||++||+|+||++||.|+.. ++++|+|||+|...+++|||+|...
T Consensus 175 ~Pl~~Wt~~dVw~Yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~~~~~~r~~rw~~~~~~~~E~g~~~~~ 244 (261)
T COG0175 175 NPLADWTELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGLHRAD 244 (261)
T ss_pred cchhcCCHHHHHHHHHHhCCCCCcHHhccCCccCcccCCCcCccccccHHHHhhccccchhhhhcccccc
Confidence 99999999999999999999999999999999999999999998 9999999999998889999999765
No 18
>KOG0189|consensus
Probab=100.00 E-value=5.7e-46 Score=360.73 Aligned_cols=213 Identities=35% Similarity=0.592 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHhcCCe-EEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcC-CeEEEEecCchh
Q psy3753 698 TVLDALNNIVTDYKPA-VFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYK-YKIKVYYPLNSE 775 (928)
Q Consensus 698 ~a~~~I~~~~~~~~~~-~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g-~~i~~~~p~~~~ 775 (928)
+..+++.|.+..|++. ..++| |....|+.+++++.+.+++++|+||+.+||||+++.+.++++|| ++|+++.|+...
T Consensus 33 sP~eIm~~al~tf~~~~q~a~~-G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY~~i~I~~~~pd~~e 111 (261)
T KOG0189|consen 33 SPQEIMDWALETFPNLFQTAAS-GLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKKYGNIRIHVYFPDAVE 111 (261)
T ss_pred CHHHHHHHHHHHhhhHHHHHhc-cccchHHHHHHHHcCCCceeEEeeccccChHHHHHHHHHHHhcCceEEEEEcchhHH
Confidence 3678999999999864 45666 67789999999999999999999999999999999999999998 999999999888
Q ss_pred hhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCC--cEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCC
Q psy3753 776 VNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGN--KSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNW 853 (928)
Q Consensus 776 ~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~--~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dW 853 (928)
........|...+|++ +...||.++|++|+++++++. .+||||.|++||..|+.++++..|. -.+.+++||+++|
T Consensus 112 ~ea~~~~K~~~~~~E~--~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~gtRselpiVqvD~-~fellK~NPlaN~ 188 (261)
T KOG0189|consen 112 VEALFASKGGFSLWED--DHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQGGTRSELPIVQVDP-VFELLKINPLANW 188 (261)
T ss_pred HHHHHHhccchhheec--CchhhhhhhhccHHHHHhhccceeeEEecccccCCCcccccceEEecC-ccceeeecccccc
Confidence 7666666666788887 467899999999999999986 8999999999999999999999986 4579999999999
Q ss_pred CHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCCCCCccccccccCCCCcccccCcCCC
Q psy3753 854 LEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHVLD 916 (928)
Q Consensus 854 t~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGlh~~~ 916 (928)
+..|||.||..+++|||.|.++||+||||++||.|+..|++||+|||||+ .|||||||...
T Consensus 189 ~~~dV~nyi~t~nVP~NeL~~~GY~SIG~~~~TqpV~~Ge~ERaGRW~~~--~~tECGlHkg~ 249 (261)
T KOG0189|consen 189 EFNDVWNYIRTNNVPYNELLAAGYRSIGDEHSTQPVLEGEDERAGRWWGE--KKTECGLHKGN 249 (261)
T ss_pred cHHHHHHHHHhcCCcHHHHHhcCCeeccCccccCcCCCCcccccccccch--hchhccccCcc
Confidence 99999999999999999999999999999999999999999999999999 59999999553
No 19
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=100.00 E-value=3.6e-42 Score=385.57 Aligned_cols=226 Identities=17% Similarity=0.263 Sum_probs=204.0
Q ss_pred CEEEEEEEeccCCCCCCC-cCHHHHHHHHHHHHHhCCCcEEecc-CCCEEEccCCcCCHHHHHHHHHHCCCCCCCccc-c
Q psy3753 333 GYIIVILSLKRINMAPGD-ITSEQMNFIANLADHYSFSELRVTH-TQNIVLSDVTKDNLFNLWTEIKQYGLSESNINL-L 409 (928)
Q Consensus 333 g~~~v~v~~~~~~~p~G~-l~~~qlr~La~ia~~~g~g~irlT~-~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~-~ 409 (928)
++||+||++|+ |+ +|++|||+|||+|++||+|.+++|+ +|||+|+|++++++++++++|.+.|++++++++ +
T Consensus 80 ~~~tvRv~~P~-----G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~eL~~~G~dlggsG~~v 154 (402)
T TIGR02064 80 EFHTVRVAQPS-----GKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEELTNLGTDLGGSGSNL 154 (402)
T ss_pred eEEEEEEecCC-----CCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHHHhhcccCCCCCCCCc
Confidence 79999998865 88 6999999999999999999999985 799999999999999999999999999988875 9
Q ss_pred cceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccc-cccEEEEeEeeC---------
Q psy3753 410 TDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHH-IGNIGILGLNKN--------- 477 (928)
Q Consensus 410 r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~-~aDig~ig~~~~--------- 477 (928)
|++++|+|.++|+++++||++++.+|.++|+ ...+.+|+||||+||||||+|++++ ++||||+|++++
T Consensus 155 Rti~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~lP~KfKI~vSGCpn~C~~~~~~~DIG~iG~~r~~~~id~~~~ 234 (402)
T TIGR02064 155 RTPESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFPYKFKFKFSGCPNDCVAAIARSDFAVIGTWKDDIKVDQEAV 234 (402)
T ss_pred cceecCCCcccCCCcccccHHHHHHHHHHHHhhhhhccCCccccccccccccccccceeccCceeeccccCCccccHHHH
Confidence 9999999999999999999999999999987 2223455699999999999999998 999999997532
Q ss_pred ---------------------------------------------------------CCcEEEEEEcCCCC--CCCcccc
Q psy3753 478 ---------------------------------------------------------GNEYFQILIGGSQG--NKLNFGK 498 (928)
Q Consensus 478 ---------------------------------------------------------~~~g~~i~vGG~~~--~~~~~g~ 498 (928)
.+.||.|++||+++ .+|++|+
T Consensus 235 ~~~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~a~~~g~~~G~~ilvGGk~~~~~g~~lg~ 314 (402)
T TIGR02064 235 KAYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPKALHPGDERGVTILIGGKAPILDGAQMGW 314 (402)
T ss_pred HHHHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccCcccccCCCCCeEEEEEccCCCCCCCCcccc
Confidence 25689999999997 5799999
Q ss_pred cccCCC----CcccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhhhc---ccchhhhccccccccccc
Q psy3753 499 IIGPSF----SADQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLYEN---DFIEENVKLLEDHVIVPF 565 (928)
Q Consensus 499 ~~~~~v----~~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~e~---~~~~~~~~~~~~~~~~p~ 565 (928)
.+.+|+ |++|+++++++++++|++|++++||+ |+.|+|.|+..|+++ ++.|+|+..|+.|||++|
T Consensus 315 ~~~~f~~~e~~~eei~~~i~~i~~~~~e~g~~~ER~--g~~i~R~G~~~f~~~i~~~~~~~~~~~pr~~~~~~~ 386 (402)
T TIGR02064 315 VVVPFVEAEEPYDEIKELVEKIIDWWDEEGKNRERI--GETIKRLGLQKFLEVIGIEPDPQMVKEPRTNPYIFF 386 (402)
T ss_pred eecccccCCCCHHHHHHHHHHHHHHHHHhCCccccH--HHHHHHhCHHHHHHHHCCCCChHHhcCCCCCCcccc
Confidence 999998 56799999999999999999999999 999999999999988 888888888877766653
No 20
>PRK08557 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=369.55 Aligned_cols=223 Identities=27% Similarity=0.425 Sum_probs=191.8
Q ss_pred CCchhhhHHHHHHHHHHHHHhcC----CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCC
Q psy3753 689 KIPLNSFVKTVLDALNNIVTDYK----PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKY 764 (928)
Q Consensus 689 ~~~l~~~~~~a~~~I~~~~~~~~----~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~ 764 (928)
...++.+++.++++|++++++|+ .+++||||||||+|+++|+.+..++++++|+|||.+||||++|+++++++||+
T Consensus 156 ~~~l~~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl 235 (417)
T PRK08557 156 KERIEKLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDL 235 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 34689999999999999999884 47899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcC-----CcEEEeeecccccccccCCcceeecC
Q psy3753 765 KIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIG-----NKSWITGQRRTQSITRSNLVLKEKDI 839 (928)
Q Consensus 765 ~i~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~-----~~~~i~G~R~~ES~~R~~~~~~~~d~ 839 (928)
++.++.+. .+++.+.+.|.|. .+.+|||.++|+.|+.+++++ ..++++|+|++||.+|++++..+.+.
T Consensus 236 ~i~v~~~~--~f~~~~~~~G~Ps-----~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~~Ra~~~~~~~~~ 308 (417)
T PRK08557 236 NLDTLDGD--NFWENLEKEGIPT-----KDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESFTRANLDYERKSG 308 (417)
T ss_pred CEEEEech--HHHHHHhhccCCc-----ccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccchhhccCceecccc
Confidence 99998754 4566667777654 247999999999999999965 35899999999999999988766554
Q ss_pred CCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCC-----------------------CCCC--
Q psy3753 840 IHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTE-----------------------KGKD-- 894 (928)
Q Consensus 840 ~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~-----------------------~~~~-- 894 (928)
..++.++++||++||+.|||.||.++++||||||++||+|+||++||.+.. -|.+
T Consensus 309 ~~~~~~~i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~~e~~~l~~~~Pe~~~k~~~~l~~~g~~~~ 388 (417)
T PRK08557 309 FIDFQTNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSALNSEFLRVKELYPELFNRWVKYLKKYGYDED 388 (417)
T ss_pred cccCceeEEecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCccHHHHHHHHHHCHHHHHHHHHHHHHhCCCHH
Confidence 334678999999999999999999999999999999999999999999977 2333
Q ss_pred -ccccccccCCCCcccccCcCCCCcchhhccccCC
Q psy3753 895 -IRSGRWWWENSNIKECGLHVLDGKLIRIKSQKGI 928 (928)
Q Consensus 895 -~r~gRW~~~~~~~~ecGlh~~~~~~~~~~~~~~~ 928 (928)
.+.|-|+|.. .+.+...++.+.||
T Consensus 389 ~~~~g~wrw~~----------~p~~~~~~~~~~~~ 413 (417)
T PRK08557 389 EILRGFWRWKE----------LPPKMKELKKNMGV 413 (417)
T ss_pred HHHhCeeeecc----------CCHHHHHHHHHhCC
Confidence 4788898864 45677777777665
No 21
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=2.5e-39 Score=348.40 Aligned_cols=202 Identities=22% Similarity=0.349 Sum_probs=173.7
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc----CCCceEEEEcCCCChHHHHHHHHHHHHHcCCe
Q psy3753 690 IPLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN----NFDINIFTLNTGRLHSETLNMLNKIYLTYKYK 765 (928)
Q Consensus 690 ~~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~----~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~ 765 (928)
..|+.+++.++++|+++++++++++++|||||||+|||||+.++ .++++++|+|||++||||++|+++++++||++
T Consensus 17 ~~L~~le~esi~ilrea~~~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~ 96 (312)
T PRK12563 17 GHLDRLEAESIHILREVVAECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGLD 96 (312)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 45999999999999999999999999999999999999999997 57899999999999999999999999999999
Q ss_pred EEEEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCccee-------
Q psy3753 766 IKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKE------- 836 (928)
Q Consensus 766 i~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~------- 836 (928)
++++.+... + ..|...+.. ...+||.++|++||.+++. ++++||+|+|++|+..|++..+++
T Consensus 97 Liv~~~~~~-~-----~~G~~~~~~---~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~sRak~~ifs~r~~~~~ 167 (312)
T PRK12563 97 LVVHHNPDG-I-----ARGIVPFRH---GSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSFRSAFHR 167 (312)
T ss_pred EEEecChHH-H-----HhCCCcccC---CHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhhhhccCceecccccccc
Confidence 999877432 1 246544432 3678999999999999996 679999999999999999987765
Q ss_pred ecCC---------------CCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcC-------------------------
Q psy3753 837 KDII---------------HNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNG------------------------- 876 (928)
Q Consensus 837 ~d~~---------------~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~G------------------------- 876 (928)
+|.. .+..++++||++||+.|||.||..++|||||||..+
T Consensus 168 wD~~~qrPelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~~~g~~~~~~~~~~~~~~~e 247 (312)
T PRK12563 168 WDPKAQRPELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLVPLYFAKRRPVVERDGLLIMVDDERTPLRPGE 247 (312)
T ss_pred cCccccChhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCCcchhcCCCceEEECCeEEeccccccCCCCCC
Confidence 2211 014799999999999999999999999999999984
Q ss_pred --------CCccCcccCCCCCCCC---------------CCcccccc
Q psy3753 877 --------YLSIGCEPCTRPTEKG---------------KDIRSGRW 900 (928)
Q Consensus 877 --------y~riGC~~Ct~~~~~~---------------~~~r~gRW 900 (928)
|+++||++||.++... ..||.||=
T Consensus 248 ~~~~~~~r~Rtlg~~~~t~~v~s~a~~~~~ii~e~~~~~~~er~~r~ 294 (312)
T PRK12563 248 TPQQRKVRFRTLGCYPLTGAVESDADTVEKIIQEMAVTRISERQGRM 294 (312)
T ss_pred ccccceeEeeccCCccccCccCCCCCCHHHHHHHHHhccCccccccc
Confidence 8888999988887643 56788883
No 22
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=100.00 E-value=1.1e-38 Score=336.08 Aligned_cols=222 Identities=26% Similarity=0.436 Sum_probs=203.8
Q ss_pred ceeeeecC-eeEEEEEcCC-CccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccC
Q psy3753 43 NGLYLQRY-AYMLRIAIPY-GMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSG 120 (928)
Q Consensus 43 ~G~~~q~~-~~~vRir~p~-G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~g 120 (928)
.|+..+++ +|++||++|. |.+++++|++|+++|++||+|.||||+||+++|+++++++++++.++|+++||. .++.|
T Consensus 20 ~Gvi~r~~~t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~iG~~-~G~~G 98 (317)
T COG2221 20 YGVIKRRDGTYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGLP-VGSTG 98 (317)
T ss_pred CceeeeccCcEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHHHHcCCC-CCCcc
Confidence 58888877 7899999887 899999999999999999999999999999999999999999999999999997 56889
Q ss_pred CcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEEe--------
Q psy3753 121 NCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKN-------- 192 (928)
Q Consensus 121 d~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~-------- 192 (928)
+.+|||++||+...|..++.||.+++++|.+.+... .+|.||||+||||||+|+.++.+||||+++..
T Consensus 99 ~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~~~----~~P~KfKI~vsGCPn~C~r~~~~DigivGv~~P~~~~E~c 174 (317)
T COG2221 99 PAVRAIVACPGPRTCETALYDTTELARRLEEEFLEV----PVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVDEELC 174 (317)
T ss_pred hhhhhhhcCcCcccccccccChHHHHHHHHHHhhcC----CCCceEEEEeecCCcccccccccceeEEEeecCccCHHHh
Confidence 999999999999999999999999999999998753 58999999999999999999999999999864
Q ss_pred --------------------------------------------cCCeeeEEEEEcccCCCCC-cccccccccCChHHHH
Q psy3753 193 --------------------------------------------KLGKIGFCVIVGGGMGRTP-IIGQIICKFLPWKHIL 227 (928)
Q Consensus 193 --------------------------------------------~~~~~gf~v~vGG~~g~~p-~~g~~l~~~v~~~e~~ 227 (928)
...+.|+.|+|||+.|+.+ +.|+.+..+.++++++
T Consensus 175 ~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~~~r~g~~~~~~~~~dei~ 254 (317)
T COG2221 175 RGCGKCVKVCPTGAITWDGKKLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKTGRELGRVGKPLVPVEDEDEII 254 (317)
T ss_pred chhHhHHHhCCCCceeeccceEEEehhhccCccHHhhhCChhhcchhhccEEEEEccccCCccccccccccccCCHHHHH
Confidence 1224689999999999976 9999998888999999
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHh
Q psy3753 228 TYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWK 272 (928)
Q Consensus 228 ~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~ 272 (928)
+++.+++++|+++++.. .+||+++++|.|+++|++++...+.
T Consensus 255 ~ii~~~~e~~~~~~~~~---~~Rigd~I~r~G~~kF~e~i~~~~~ 296 (317)
T COG2221 255 DIIKKTIEVWREYAEKP---GERIGDFIDRVGFEKFLEEILREVK 296 (317)
T ss_pred HHHHHHHHHHHHhcccc---cchHHHHHHHHhHHHHHHHHHHhhc
Confidence 99999999999999752 3499999999999999999986543
No 23
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=100.00 E-value=1.6e-39 Score=359.50 Aligned_cols=229 Identities=17% Similarity=0.278 Sum_probs=202.3
Q ss_pred eeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCccc-
Q psy3753 330 KINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINL- 408 (928)
Q Consensus 330 k~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~- 408 (928)
+++++||||+++ |+ ++|++||++||++|++||+|.+++|++|||+|++|+.+++++++++|.+.||.+++++.
T Consensus 26 ~~~~~~mvRv~i-----p~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl~~i~~~L~~~Gl~~~~~G~~ 99 (341)
T TIGR02066 26 SGDVIYTVKAGT-----PR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDELEEVGFPVGGTGDA 99 (341)
T ss_pred CCCcEEEEEeCC-----Cc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 467899999876 56 99999999999999999999999999999999999999999999999999999987764
Q ss_pred cc-ceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEee---------
Q psy3753 409 LT-DIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNK--------- 476 (928)
Q Consensus 409 ~r-~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~--------- 476 (928)
+| ++++|+|.++|+++++||.+++..|.+.+. .....+|+||||+||||||+|++++++||||+|+.+
T Consensus 100 vrrni~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~~lP~KfKI~vSGC~~~C~~~~~~Dig~~g~~~~~p~~~~~~ 179 (341)
T TIGR02066 100 VKGNIVHTQGWLHCHIPAIDASGIVKAVMDELYEYFTDHKLPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKINHEA 179 (341)
T ss_pred cccccccCcCCCCCCcchhchHHHHHHHHHHHHHHHhcccccccceeccccccccccchhhccccccccccCCcEEcHHH
Confidence 77 999999999999999999998877765544 112235569999999999999999999999999632
Q ss_pred -----------------------C-------------------------------CCcEEEEEEcCCCC---CCCccccc
Q psy3753 477 -----------------------N-------------------------------GNEYFQILIGGSQG---NKLNFGKI 499 (928)
Q Consensus 477 -----------------------~-------------------------------~~~g~~i~vGG~~~---~~~~~g~~ 499 (928)
+ .+.||.|++||+.| ++|++|+.
T Consensus 180 ~~~~c~~~~Cv~~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG~~g~~~~~p~lg~~ 259 (341)
T TIGR02066 180 VRNVCEIPSVVAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGGKLSNARVMPELSKV 259 (341)
T ss_pred HHhhcCCCceEeeCchhhceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEccccCccccCCcccce
Confidence 1 14789999999886 57999999
Q ss_pred ccCCCCc-----ccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhhhc---ccchhhhcccccccccccc
Q psy3753 500 IGPSFSA-----DQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLYEN---DFIEENVKLLEDHVIVPFK 566 (928)
Q Consensus 500 ~~~~v~~-----~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~e~---~~~~~~~~~~~~~~~~p~~ 566 (928)
+.++++. +++++++++++++|+++++++||+ |+.|+|.||..|.+. ++.|+|+..|+.+||+..+
T Consensus 260 ~~~~~~~~~~~~e~~~~~i~~i~~~~~~~~~~~eR~--g~~i~RvG~~~f~~~v~~~~~~~~~~~~~~~~~~~~~ 332 (341)
T TIGR02066 260 VVPWIPNNPPRWPELVAYVKKILEAWKANAKKHERL--IEWVERIGWERFFELVGLPFTQHHIDDWRIAPYFYST 332 (341)
T ss_pred ecccccCCCcchHHHHHHHHHHHHHHHHcCcCCccH--HHHHHHHhHHHHHHHHCCCCChHHhcCcccCCeEEEE
Confidence 9999986 689999999999999999999999 999999999988887 8899999988888888654
No 24
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=100.00 E-value=8.1e-39 Score=337.08 Aligned_cols=228 Identities=23% Similarity=0.375 Sum_probs=200.6
Q ss_pred cccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCC
Q psy3753 325 NTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSES 404 (928)
Q Consensus 325 gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~ 404 (928)
|+...+ ++.|++||++| |+|++++++|++|+|||++||+|.+++|+||+++|++++.++++.+.++|++.||.++
T Consensus 21 Gvi~r~-~~t~~vRv~~p----pgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~iG~~~G 95 (317)
T COG2221 21 GVIKRR-DGTYTVRVRTP----PGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGLPVG 95 (317)
T ss_pred ceeeec-cCcEEEEEecC----CCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHHHHcCCCCC
Confidence 554443 56799999986 4699999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc-ccceeccCCcccccccccchHHHHHHHHHHhc-ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEeeC-----
Q psy3753 405 NINL-LTDIICCPGGDFCSLANTKSLPIAKNIMKYFS-KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKN----- 477 (928)
Q Consensus 405 ~~~~-~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~-~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~----- 477 (928)
++++ +|+++||+|...|+.+++||.+++++|.++|. +..|+ ||||+||||||+|++++.+||||+|+++.
T Consensus 96 ~~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~~~~~P~---KfKI~vsGCPn~C~r~~~~DigivGv~~P~~~~E 172 (317)
T COG2221 96 STGPAVRAIVACPGPRTCETALYDTTELARRLEEEFLEVPVPY---KFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVDEE 172 (317)
T ss_pred CcchhhhhhhcCcCcccccccccChHHHHHHHHHHhhcCCCCc---eEEEEeecCCcccccccccceeEEEeecCccCHH
Confidence 9986 99999999999999999999999999999997 55565 99999999999999999999999998631
Q ss_pred ------------------------------------------------CCcEEEEEEcCCCCCCC-cccccccCCCCccc
Q psy3753 478 ------------------------------------------------GNEYFQILIGGSQGNKL-NFGKIIGPSFSADQ 508 (928)
Q Consensus 478 ------------------------------------------------~~~g~~i~vGG~~~~~~-~~g~~~~~~v~~~e 508 (928)
.+.|+.|+|||+.|+.+ ++|..+.+..++++
T Consensus 173 ~c~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~~~r~g~~~~~~~~~de 252 (317)
T COG2221 173 LCRGCGKCVKVCPTGAITWDGKKLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKTGRELGRVGKPLVPVEDEDE 252 (317)
T ss_pred HhchhHhHHHhCCCCceeeccceEEEehhhccCccHHhhhCChhhcchhhccEEEEEccccCCccccccccccccCCHHH
Confidence 34789999999999754 89999888789999
Q ss_pred HHHHHHHHHHHHHHhccc-ccccccccceeehhhhhhhhcccchhhhcccccccc
Q psy3753 509 VPDIINRILKVYLRRCYL-MCKIIKNDTIVNDNWKMLYENDFIEENVKLLEDHVI 562 (928)
Q Consensus 509 ~~~~i~~l~~~y~e~~~~-~eR~~k~~~i~r~g~~~~~e~~~~~~~~~~~~~~~~ 562 (928)
++++|++++++|++++++ .+|+ |+.|.|.||.+|++.-......+.++.+||
T Consensus 253 i~~ii~~~~e~~~~~~~~~~~Ri--gd~I~r~G~~kF~e~i~~~~~~~~~~~~p~ 305 (317)
T COG2221 253 IIDIIKKTIEVWREYAEKPGERI--GDFIDRVGFEKFLEEILREVKQRKPRLPPY 305 (317)
T ss_pred HHHHHHHHHHHHHHhcccccchH--HHHHHHHhHHHHHHHHHHhhcccccccCcc
Confidence 999999999999999998 6788 999999999999988433322233434433
No 25
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=100.00 E-value=1.9e-38 Score=350.90 Aligned_cols=214 Identities=21% Similarity=0.317 Sum_probs=190.1
Q ss_pred CeeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCccc-ceEe
Q psy3753 50 YAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIR-NITS 128 (928)
Q Consensus 50 ~~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vR-ni~~ 128 (928)
+.||||+++|+ ++|++||++||++|++||+|.+||||||||||+||+.+++++++++|.++||.+ +++|+.+| ||++
T Consensus 29 ~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl~~i~~~L~~~Gl~~-~~~G~~vrrni~a 106 (341)
T TIGR02066 29 VIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDELEEVGFPV-GGTGDAVKGNIVH 106 (341)
T ss_pred cEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHHHHHHHHHHhccCCC-CCCCCcccccccc
Confidence 38999999999 999999999999999999999999999999999999999999999999999986 57788888 9999
Q ss_pred CCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEEe----------------
Q psy3753 129 DELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKN---------------- 192 (928)
Q Consensus 129 cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~---------------- 192 (928)
||++..|+.+++|+.+++..|.+.+...-...+||+||||+||||+++|+.++++||||++...
T Consensus 107 C~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~~lP~KfKI~vSGC~~~C~~~~~~Dig~~g~~~~~p~~~~~~~~~~c~~ 186 (341)
T TIGR02066 107 TQGWLHCHIPAIDASGIVKAVMDELYEYFTDHKLPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKINHEAVRNVCEI 186 (341)
T ss_pred CcCCCCCCcchhchHHHHHHHHHHHHHHHhcccccccceeccccccccccchhhccccccccccCCcEEcHHHHHhhcCC
Confidence 9999999999999999887666443221112479999999999999999999999999998521
Q ss_pred ----------------c------------------------------CCeeeEEEEEcccCC---CCCcccccccccCCh
Q psy3753 193 ----------------K------------------------------LGKIGFCVIVGGGMG---RTPIIGQIICKFLPW 223 (928)
Q Consensus 193 ----------------~------------------------------~~~~gf~v~vGG~~g---~~p~~g~~l~~~v~~ 223 (928)
+ ..+.||.|++||++| +.|++|+.+..+++.
T Consensus 187 ~~Cv~~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG~~g~~~~~p~lg~~~~~~~~~ 266 (341)
T TIGR02066 187 PSVVAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGGKLSNARVMPELSKVVVPWIPN 266 (341)
T ss_pred CceEeeCchhhceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEccccCccccCCcccceecccccC
Confidence 0 124799999999876 689999999888887
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHH
Q psy3753 224 -----KHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNE 269 (928)
Q Consensus 224 -----~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~ 269 (928)
+++++++++++++|.+++.+ +|||+++++|+|+++|++++..
T Consensus 267 ~~~~~e~~~~~i~~i~~~~~~~~~~----~eR~g~~i~RvG~~~f~~~v~~ 313 (341)
T TIGR02066 267 NPPRWPELVAYVKKILEAWKANAKK----HERLIEWVERIGWERFFELVGL 313 (341)
T ss_pred CCcchHHHHHHHHHHHHHHHHcCcC----CccHHHHHHHHhHHHHHHHHCC
Confidence 79999999999999999876 7999999999999999998864
No 26
>PRK13794 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=365.01 Aligned_cols=196 Identities=22% Similarity=0.335 Sum_probs=176.7
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcC-CeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHHHHHHcCCe
Q psy3753 688 EKIPLNSFVKTVLDALNNIVTDYK-PAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNKIYLTYKYK 765 (928)
Q Consensus 688 ~~~~l~~~~~~a~~~I~~~~~~~~-~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~ 765 (928)
+...|+.++..|+++|+++++.++ +++|+|||||||+|+|+|+.++ +.++.++|+|||.+||||++|+++++++||++
T Consensus 224 n~~~l~~~~~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~ 303 (479)
T PRK13794 224 NKNVLDKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLE 303 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCc
Confidence 445688999999999999998875 7999999999999999999998 68999999999999999999999999999999
Q ss_pred EEEEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcC----CcEEEeeecccccccccCCcceeecCCC
Q psy3753 766 IKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIG----NKSWITGQRRTQSITRSNLVLKEKDIIH 841 (928)
Q Consensus 766 i~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~----~~~~i~G~R~~ES~~R~~~~~~~~d~~~ 841 (928)
++++.+. .+++.+..+|+|. .+.+|||.++|+.|+.+++++ ..++++|+|++||..|++++.++.+...
T Consensus 304 i~~~~~~--~f~~~~~~~G~P~-----~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~~Ra~~~~~~~~~~~ 376 (479)
T PRK13794 304 IIRTKSE--EFWEKLEEYGPPA-----RDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESFNRSKKPRIWRNPYI 376 (479)
T ss_pred EEEEchH--HHHHHHHhcCCCC-----CcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccHhHhcCcccccccCc
Confidence 9998876 4566666777653 246999999999999999964 4689999999999999999888776655
Q ss_pred CCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCC
Q psy3753 842 NGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTE 890 (928)
Q Consensus 842 ~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~ 890 (928)
++.++++||++||..|||.||..+++||||||++||.|+||++||....
T Consensus 377 ~~~~~~~PI~~Wt~~dVw~Yi~~~~lp~npLY~~G~~riGC~~Cp~~~~ 425 (479)
T PRK13794 377 KKQILAAPILHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMCPAMEL 425 (479)
T ss_pred CCcEEEechHhCCHHHHHHHHHHcCCCCChHHHCCCCCCccccCcCcCH
Confidence 6889999999999999999999999999999999999999999999876
No 27
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=100.00 E-value=2.5e-37 Score=332.42 Aligned_cols=200 Identities=24% Similarity=0.396 Sum_probs=172.5
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc----CCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEE
Q psy3753 692 LNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN----NFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIK 767 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~----~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~ 767 (928)
|+.++.+++.+|++++++|++.+++|||||||+|||||+.++ .++++++|+|||++||||++|+++++++||++++
T Consensus 1 l~~le~esi~ilRe~~~~f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~ 80 (294)
T TIGR02039 1 LRALESEAIHIIREVAAEFERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLI 80 (294)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEE
Confidence 467899999999999999998899999999999999999998 4579999999999999999999999999999999
Q ss_pred EEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceee-------c
Q psy3753 768 VYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEK-------D 838 (928)
Q Consensus 768 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~-------d 838 (928)
++.+... ..+|...+.. ...+||.++|+.||++++. +.++||+|.|++|+..|++..+++. |
T Consensus 81 v~~~~~~------~~~g~~~~~~---~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~sRake~i~s~r~~~~~wD 151 (294)
T TIGR02039 81 VHSNEEG------IADGINPFTE---GSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRNAFHQWD 151 (294)
T ss_pred EEechhh------hhcCcccccc---ChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhhHhhcCceeeccccccccC
Confidence 9987532 2356544433 3567999999999999995 6799999999999999998655532 2
Q ss_pred CC---------------CCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc----------------------------
Q psy3753 839 II---------------HNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN---------------------------- 875 (928)
Q Consensus 839 ~~---------------~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~---------------------------- 875 (928)
.. .+..++++||++||+.|||.||..++|||||||..
T Consensus 152 ~~~q~Pelw~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~r~g~~~~~~~~~~~~~~~~~~ 231 (294)
T TIGR02039 152 PKKQRPELWNLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIPIVPLYFAAKRPVVQRDGMLIMVDDVRMPLAPGEVV 231 (294)
T ss_pred ccccCchhhhccccccccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCeecCccceeeccCeEEecCccccCCCCCCcc
Confidence 11 11368999999999999999999999999999965
Q ss_pred -----CCCccCcccCCCCCCCC---------------CCcccccc
Q psy3753 876 -----GYLSIGCEPCTRPTEKG---------------KDIRSGRW 900 (928)
Q Consensus 876 -----Gy~riGC~~Ct~~~~~~---------------~~~r~gRW 900 (928)
+|+++||++||.++... ..||.||=
T Consensus 232 ~~~~~r~rt~g~~~~t~~~~s~a~~~~~~~~e~~~~~~~er~~r~ 276 (294)
T TIGR02039 232 KERMVRFRTLGCYPLTGAIESDAATVEEIIAETAAARTSERQGRA 276 (294)
T ss_pred cccceeecccCcccCCCcccCCCCCHHHHHHHHHhccCccccccc
Confidence 89999999999998865 67899984
No 28
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=100.00 E-value=1e-37 Score=316.96 Aligned_cols=172 Identities=34% Similarity=0.594 Sum_probs=131.6
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCCCCccc
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDS 791 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~~~~~~ 791 (928)
+++|+|||||||+|||||+.++..+++++|+|||.+||||++|++++.++||++++++.+...... .....+.+. ..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~--~~ 77 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPETFEQ-RFILYGWPS--KL 77 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTSHHHH-HHHHHHHST--TH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccccchhh-ccccccccc--hh
Confidence 579999999999999999999999999999999999999999999999999999999988876433 233333211 10
Q ss_pred hhhhhhhhhhcccchHHHhhcCC--cEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCC
Q psy3753 792 VQMRKKCCYIRKVKPLKKALIGN--KSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPY 869 (928)
Q Consensus 792 ~~~~~~Cc~~~K~~Pl~~~l~~~--~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~ 869 (928)
-..+||..+|+.|+++++++. .++++|+|++||..|++....+.+...++.++++||++||++|||+||+++++|+
T Consensus 78 --~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~~R~~~~~~~~~~~~~~~~~~~Pi~~wt~~dV~~yi~~~~l~~ 155 (174)
T PF01507_consen 78 --WRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESPRRAKLPMFEFDEDNPKIIRVYPIADWTEEDVWDYIKANGLPY 155 (174)
T ss_dssp --HHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTTGCCGSSSEEEETTTTSEEEE-TTTT--HHHHHHHHHHHT--B
T ss_pred --hhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchhhhhhchhhhcccccCCEEEEEehhhCCHHHHHHHHHHhcCCC
Confidence 112799999999999999744 6999999999999999988888776566799999999999999999999999999
Q ss_pred ChhhhcCCCccCcccCCCC
Q psy3753 870 NTLYDNGYLSIGCEPCTRP 888 (928)
Q Consensus 870 npLYd~Gy~riGC~~Ct~~ 888 (928)
||+|++||+|+||++||.|
T Consensus 156 ~~lY~~g~~r~GC~~C~~~ 174 (174)
T PF01507_consen 156 NPLYDKGYSRVGCWPCTRP 174 (174)
T ss_dssp -HHHHCT-SS--BTTTB--
T ss_pred cHHHHCcCCCcCCccCCCC
Confidence 9999999999999999976
No 29
>PRK13795 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-37 Score=366.73 Aligned_cols=198 Identities=23% Similarity=0.360 Sum_probs=177.1
Q ss_pred ccCCchhhhHHHHHHHHHHHHHhcC-CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCe
Q psy3753 687 DEKIPLNSFVKTVLDALNNIVTDYK-PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYK 765 (928)
Q Consensus 687 ~~~~~l~~~~~~a~~~I~~~~~~~~-~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~ 765 (928)
.+...|+.+++.++++|++++++++ +++|+|||||||+|+|||+.++..++.++|+|||.+||||++|++++.++||++
T Consensus 219 ~n~~~l~~~~~~ai~~Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~ 298 (636)
T PRK13795 219 ANRKHLEEKEKEAVNFIRGVAEKYNLPVSVSFSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIE 298 (636)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCc
Confidence 3455789999999999999999884 799999999999999999999988999999999999999999999999999999
Q ss_pred EEEEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCC----cEEEeeecccccccccCCcceeecCCC
Q psy3753 766 IKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGN----KSWITGQRRTQSITRSNLVLKEKDIIH 841 (928)
Q Consensus 766 i~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~----~~~i~G~R~~ES~~R~~~~~~~~d~~~ 841 (928)
++++.+. ..+++.+..+|+|. .+.+|||..+|+.|+.+++++. .++|+|+|++||..|++.+.++.+...
T Consensus 299 i~~~~~~-~~f~~~~~~~g~P~-----~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~~R~~~~~~~~~~~~ 372 (636)
T PRK13795 299 LIEADAG-DAFWRAVEKFGPPA-----RDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESFSRAKSPRVWRNPWV 372 (636)
T ss_pred EEEEccc-HhHHHhhhccCCCc-----cccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchHHHhhCcccccCCCC
Confidence 9998876 33455555666542 3479999999999999999643 488999999999999999888777655
Q ss_pred CCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCC
Q psy3753 842 NGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTE 890 (928)
Q Consensus 842 ~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~ 890 (928)
++.++++||++||..|||.||..+++||||||++||+|+||++||.+..
T Consensus 373 ~~~~~~~PI~~Wt~~dVw~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~ 421 (636)
T PRK13795 373 PNQIGASPIQDWTALEVWLYIFWRKLPYNPLYERGFDRIGCWLCPSSSL 421 (636)
T ss_pred CCcEEEechHhCCHHHHHHHHHHhCCCCChHHHCCCCCCCccCCCCCCH
Confidence 7889999999999999999999999999999999999999999999876
No 30
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.4e-36 Score=373.90 Aligned_cols=209 Identities=18% Similarity=0.263 Sum_probs=198.1
Q ss_pred eecC-eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccc
Q psy3753 47 LQRY-AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRN 125 (928)
Q Consensus 47 ~q~~-~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRn 125 (928)
.|++ +||||+|+|+|++|++||+.||++|++||. +++||+||||||+||+.+++++++++|.++||.+.+++|+.+||
T Consensus 559 ~Qk~g~~~v~~~~p~G~lt~~ql~~ia~iA~kyg~-~~~iT~~Q~i~L~~i~~~~l~~v~~~L~~~Gl~~~~~~g~~vr~ 637 (847)
T PRK14989 559 IQKDGTYSVIPRSAGGEITPEGLMAVGRIAREFNL-YTKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGHAYAKALRM 637 (847)
T ss_pred cccCCeEEEEEEcCCcEeCHHHHHHHHHHHHHHCC-cEEEcCCCceEeCCCCHHHHHHHHHHHHHCCCCcCCCCCCCcCc
Confidence 3666 899999999999999999999999999995 79999999999999999999999999999999988888999999
Q ss_pred eEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcc
Q psy3753 126 ITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGG 205 (928)
Q Consensus 126 i~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG 205 (928)
|++||+++.|+.++.|+.++|.+|.+.+.. ..+|+||||+|||||++|++++++||||++..+ ||+||+||
T Consensus 638 v~aC~G~~~C~~g~~dt~~la~~l~~~~~~----~~~P~k~ki~vSGC~~~C~~~~i~DiG~i~~~~-----G~~v~vGG 708 (847)
T PRK14989 638 AKTCVGSTWCRYGVGDSVGLGVELENRYKG----IRTPHKMKFGVSGCTRECAEAQGKDVGIIATEK-----GWNLYVCG 708 (847)
T ss_pred eeeCCCCCccccccccHHHHHHHHHHHhcc----CCCCCceEEEEeCCcccccccccccEEEEEecC-----ceEEEECC
Confidence 999999999999999999999999988753 458999999999999999999999999999875 89999999
Q ss_pred cCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhh--CHHHHHHHHHH
Q psy3753 206 GMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSI--GIENFQFQVNE 269 (928)
Q Consensus 206 ~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~--G~e~f~~~~~~ 269 (928)
+.|.+|++|+.+..+++++++++++.+++++|++++++ ++|+..|++|+ |++.|++.+.+
T Consensus 709 ~~G~~~~~g~~l~~~~~~~~v~~~i~~~l~~y~~~~~~----~er~~~~~~r~~~g~~~~~~~~~~ 770 (847)
T PRK14989 709 NGGMKPRHADLLAADLDRETLIKYLDRFMMFYIRTADK----LQRTAVWLENLEGGIDYLKAVIID 770 (847)
T ss_pred CCCCCCcceeeecCCCCHHHHHHHHHHHHHHHHHhCcc----cccHHHHHHHhhchHHHHHHHHhc
Confidence 99999999999999999999999999999999999987 79999999999 99999998875
No 31
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2.4e-36 Score=372.41 Aligned_cols=212 Identities=22% Similarity=0.275 Sum_probs=201.1
Q ss_pred ceeeeecC-eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCC
Q psy3753 43 NGLYLQRY-AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGN 121 (928)
Q Consensus 43 ~G~~~q~~-~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd 121 (928)
.+...|++ .||||+|+|+|++|++||++||++|++||.|+++||+||||||+||+++++++++++|.++||. .++|+
T Consensus 544 ~~~~~qk~g~~~v~~~~~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L~~~gl~--~~~g~ 621 (785)
T TIGR02374 544 FLANIQKDGTYSVIPRMYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYE--HAYGK 621 (785)
T ss_pred eeeccccCCceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHHHhCCCC--CCCCC
Confidence 56677875 8999999999999999999999999999999999999999999999999999999999999996 58899
Q ss_pred cccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEE
Q psy3753 122 CIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCV 201 (928)
Q Consensus 122 ~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v 201 (928)
.+|||++||++..|+.++.|+.+++.+|.+.+.. ..+|+||||+|||||++|+.++++||||++..+ ||+|
T Consensus 622 ~~r~v~aC~G~~~C~~g~~ds~~la~~l~~~~~~----~~~p~k~ki~vSGC~~~C~~~~~~DiG~i~~~~-----g~~v 692 (785)
T TIGR02374 622 ALRTVKTCVGSQWCRYGNQDSVQLAIQLERRYEG----LRTPHKIKIGVSGCERECAEAAGKDVGVIATEK-----GWNL 692 (785)
T ss_pred CccCcccCCCccccCcchhhHHHHHHHHHHHhcc----cCCCCceEEEEECCccccchhhhCcEEEEEecC-----CeEE
Confidence 9999999999999999999999999999988753 468999999999999999999999999999875 8999
Q ss_pred EEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHH
Q psy3753 202 IVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNE 269 (928)
Q Consensus 202 ~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~ 269 (928)
|+||+.|.+|++|+.+..+++++++++++++++++|++++++ .+|+++|++|+|.++|++.+.+
T Consensus 693 ~vGG~~g~~~~~a~~l~~~~~~e~v~~~i~~~l~~y~~~~~~----~er~~~~i~r~G~~~~~~~~~~ 756 (785)
T TIGR02374 693 YVGGNGGTHPRHGDLLAVDEDEETLIGYIDRFLQYYRETADY----LERTAPWLERLGIDHVREVLFE 756 (785)
T ss_pred EECCcCCCCCcceeeecCCCCHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHhChHHHHHHHHh
Confidence 999999999999999999999999999999999999999987 7899999999999999999886
No 32
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=100.00 E-value=5.4e-36 Score=335.82 Aligned_cols=234 Identities=21% Similarity=0.273 Sum_probs=205.7
Q ss_pred CCCCHHHHhhccccceeeee--c---------CeeEEEEEcCCCc-cCHHHHHHHHHHHHHhCCCeEeccc-cCceEEcc
Q psy3753 29 NELSEEEFIVLRLQNGLYLQ--R---------YAYMLRIAIPYGM-LSSKQMRMLSYIAKKYDRNYGHFTT-RQNIQFNW 95 (928)
Q Consensus 29 ~~~~~~~~~~~~~~~G~~~q--~---------~~~~vRir~p~G~-lt~~ql~~la~iA~~yg~g~i~lTt-Rq~iql~g 95 (928)
+.+....++.++...|+|.| + +.||+||++|+|. +|++||++||++|++||+|.+++|+ ||||+|+|
T Consensus 48 ~~wkgg~v~v~gyg~GVigr~~~~~~~~p~~~~~~tvRv~~P~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~g 127 (402)
T TIGR02064 48 THWKGGIVSVFGYGGGVIGRYSDQGEKFPGVAEFHTVRVAQPSGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLG 127 (402)
T ss_pred ccccCceEeeeecCCEEEEEecCCcccCCCcCeEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcC
Confidence 34445556666777889987 2 3799999999998 6999999999999999999999984 89999999
Q ss_pred cCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCC
Q psy3753 96 IKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQE 175 (928)
Q Consensus 96 i~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~ 175 (928)
++.+++++++++|.++|+. .+++|+++||+++||++..|+.+.+||.+++.+|.+.+........||+||||+||||||
T Consensus 128 v~~e~le~i~~eL~~~G~d-lggsG~~vRti~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~lP~KfKI~vSGCpn 206 (402)
T TIGR02064 128 TQTPQLQEIFEELTNLGTD-LGGSGSNLRTPESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFPYKFKFKFSGCPN 206 (402)
T ss_pred CCHHHHHHHHHHHhhcccC-CCCCCCCccceecCCCcccCCCcccccHHHHHHHHHHHHhhhhhccCCcccccccccccc
Confidence 9999999999999999996 478899999999999999999999999999999998875432234699999999999999
Q ss_pred Cccccc-ccceEEEEEEec-------------------------------------------------------------
Q psy3753 176 DRAAIF-VHDIGLRAIKNK------------------------------------------------------------- 193 (928)
Q Consensus 176 ~c~~~~-~~Dig~ia~~~~------------------------------------------------------------- 193 (928)
+|+.+. ++||||+|+..+
T Consensus 207 ~C~~~~~~~DIG~iG~~r~~~~id~~~~~~~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~ 286 (402)
T TIGR02064 207 DCVAAIARSDFAVIGTWKDDIKVDQEAVKAYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPK 286 (402)
T ss_pred ccccceeccCceeeccccCCccccHHHHHHHHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccCcc
Confidence 999999 999999996320
Q ss_pred ----CCeeeEEEEEcccCC--CCCcccccccccC----ChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHH
Q psy3753 194 ----LGKIGFCVIVGGGMG--RTPIIGQIICKFL----PWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENF 263 (928)
Q Consensus 194 ----~~~~gf~v~vGG~~g--~~p~~g~~l~~~v----~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f 263 (928)
+.++||.|++||+.+ ..|++|..+..|+ +.+++.+++++++++|.+++.. +||++++++|+|+++|
T Consensus 287 a~~~g~~~G~~ilvGGk~~~~~g~~lg~~~~~f~~~e~~~eei~~~i~~i~~~~~e~g~~----~ER~g~~i~R~G~~~f 362 (402)
T TIGR02064 287 ALHPGDERGVTILIGGKAPILDGAQMGWVVVPFVEAEEPYDEIKELVEKIIDWWDEEGKN----RERIGETIKRLGLQKF 362 (402)
T ss_pred cccCCCCCeEEEEEccCCCCCCCCcccceecccccCCCCHHHHHHHHHHHHHHHHHhCCc----cccHHHHHHHhCHHHH
Confidence 025689999999997 5699999998888 5589999999999999999854 8999999999999999
Q ss_pred HHHH
Q psy3753 264 QFQV 267 (928)
Q Consensus 264 ~~~~ 267 (928)
++.+
T Consensus 363 ~~~i 366 (402)
T TIGR02064 363 LEVI 366 (402)
T ss_pred HHHH
Confidence 9877
No 33
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=6.6e-36 Score=354.94 Aligned_cols=256 Identities=18% Similarity=0.225 Sum_probs=215.4
Q ss_pred CcCCccCHHHHHHHHHHHHHHHHHHhcCCCCHHHHhh-----ccccceeeeecC--eeEEEEEcCCCccCHHHHHHHHHH
Q psy3753 2 YHYDKYDHQLVKERVIQYRDQVRRRLSNELSEEEFIV-----LRLQNGLYLQRY--AYMLRIAIPYGMLSSKQMRMLSYI 74 (928)
Q Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~G~~~q~~--~~~vRir~p~G~lt~~ql~~la~i 74 (928)
|++++|+.++++++++++...- . ...+++.++. ...+.|||+|++ .||||+++|+|+||++|++.||++
T Consensus 322 ~li~~~G~e~f~~~ve~~~~~~--l--~~~~~~~~~~~~~~~~~~~~Gv~~Qkq~G~~~v~v~vp~Grlt~~ql~~LA~i 397 (593)
T PRK09567 322 YVLDAWGFDKFLEAVEEKLGRP--L--TRVPAEAVAPRPAADRFAHVGVHPQKQPGLNWIGVVLPVGRLTTDQMRGLAKI 397 (593)
T ss_pred HHHHHHCHHHHHHHHHHHhccc--c--cccchhhcCCCcchhccccceeeccCCCCceEEEEECCCCccCHHHHHHHHHH
Confidence 6778888877777776542211 0 1122222221 122479999984 799999999999999999999999
Q ss_pred HHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhc
Q psy3753 75 AKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWST 154 (928)
Q Consensus 75 A~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~ 154 (928)
|++||+|.||||+||||||+||+.++++++.++|.++||.+.. ....+++++|+++..|+.++.||.+++.+|.+.+.
T Consensus 398 A~~yg~g~irlT~~Qni~l~~V~~~~~~~l~~~L~~~Gl~~~~--~~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~ 475 (593)
T PRK09567 398 AARYGDGEIRLTVWQNLLISGVPDADVAAVEAAIEALGLTTEA--SSIRAGLVACTGNAGCKFAAADTKGHALAIADYCE 475 (593)
T ss_pred HHHhCCCEEEEeCCCCeEEcCCCHHHHHHHHHHHHHcCCCCCC--cceeeccEecCCCCCCCccHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998632 23344699999999999999999999999998885
Q ss_pred cCCccccCCCceEEEEEecCCCcccccccceEEEEEEe----cCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHH
Q psy3753 155 FHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKN----KLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYI 230 (928)
Q Consensus 155 ~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~----~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~ 230 (928)
. .+ .||.||||+|||||++|++++++||||++... ++...||+||+||+.|..|++|+.+..+++.+++++++
T Consensus 476 ~--~~-~l~~~ikI~vSGCpn~Ca~~~iaDIGfvG~~~~~~~g~~~~gy~v~lGG~~g~~~~lg~~~~~~vp~eev~~~l 552 (593)
T PRK09567 476 P--RV-ALDQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVVGGGFGEDAAIGREVFRDVKAEDAPRLV 552 (593)
T ss_pred H--hc-CCCCCcEEEEECCCccccccccCCEEEEeeEeccCCCCccceEEEEECCCCCCCCCcchHhhcCCCHHHHHHHH
Confidence 3 22 68999999999999999999999999999753 22346999999999999999999888899999999999
Q ss_pred HHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHH
Q psy3753 231 EAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNE 269 (928)
Q Consensus 231 ~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~ 269 (928)
+++++.|.+++.. ..|+|.++++|+|.++|++.+..
T Consensus 553 ~~ll~~y~~~r~~---~~E~f~~f~~R~g~e~l~~~l~~ 588 (593)
T PRK09567 553 ERLLRAYLAHRQG---PDETFQAFTRRHDPEALRSLAEE 588 (593)
T ss_pred HHHHHHHHHhcCC---CCCcHHHHHHHcCcHHHHHHHhc
Confidence 9999999988652 27899999999999999998864
No 34
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=7.5e-36 Score=324.33 Aligned_cols=201 Identities=25% Similarity=0.419 Sum_probs=172.3
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc----CCCceEEEEcCCCChHHHHHHHHHHHHHcCCeE
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN----NFDINIFTLNTGRLHSETLNMLNKIYLTYKYKI 766 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~----~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i 766 (928)
.|..++..++++|++++++|++++++|||||||+|||||+.++ .++++++|+|||.+||||++|++++++.||+++
T Consensus 8 ~L~~le~esi~iLrea~~~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l 87 (301)
T PRK05253 8 HLDQLEAESIHILREVAAEFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLEL 87 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCE
Confidence 4889999999999999999999999999999999999999997 347899999999999999999999999999999
Q ss_pred EEEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceee-------
Q psy3753 767 KVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEK------- 837 (928)
Q Consensus 767 ~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~------- 837 (928)
+++.+... ...|...+.. ...+||..+|+.||.++++ +.++|++|.|++|+..|++..+++.
T Consensus 88 ~v~~~~~~------i~~g~~~~~~---~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~~Ra~e~~fs~r~~~~~w 158 (301)
T PRK05253 88 IVHSNPEG------IARGINPFRH---GSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSFRDEFGQW 158 (301)
T ss_pred EEEeChHH------HhcCCCCCCC---ChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhhhhccCcccccccccccc
Confidence 99876521 1345433322 3579999999999999996 5789999999999999997655531
Q ss_pred cCC---------------CCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc---------C-----------------
Q psy3753 838 DII---------------HNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN---------G----------------- 876 (928)
Q Consensus 838 d~~---------------~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~---------G----------------- 876 (928)
|.. .+..++++||++||+.|||.||+.++|||||||.. |
T Consensus 159 d~~~q~Pelw~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (301)
T PRK05253 159 DPKNQRPELWNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVV 238 (301)
T ss_pred CccccChhhhhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCCCCcccccCCCceEeECCeEEecccccCCCCCCcc
Confidence 110 12378999999999999999999999999999995 4
Q ss_pred ------CCccCcccCCCCCCCC---------------CCcccccc
Q psy3753 877 ------YLSIGCEPCTRPTEKG---------------KDIRSGRW 900 (928)
Q Consensus 877 ------y~riGC~~Ct~~~~~~---------------~~~r~gRW 900 (928)
|+|+||++||.++... ..||.||=
T Consensus 239 ~~~~~r~r~~g~~~~t~~~~s~a~~~~~~~~e~~~~~~~er~~r~ 283 (301)
T PRK05253 239 EERMVRFRTLGCYPCTGAVESEAATLEEIIAEMLVTRTSERGGRA 283 (301)
T ss_pred eeeeeeeeccCCccCCCcccCCCCCHHHHHHHHHhccCccccccc
Confidence 9999999999998755 67899984
No 35
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=100.00 E-value=3.9e-35 Score=324.90 Aligned_cols=223 Identities=21% Similarity=0.291 Sum_probs=196.2
Q ss_pred cceeeeecC--eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHc--CCc---
Q psy3753 42 QNGLYLQRY--AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASV--EMH--- 114 (928)
Q Consensus 42 ~~G~~~q~~--~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~--GL~--- 114 (928)
+.|...|++ .||+||++|+|++|++||+.||++|++||+|.+||||||||||+||+.+++++++++|+++ ||.
T Consensus 9 ~~~~~~~~~~g~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~~L~~~~~gl~~~~ 88 (314)
T TIGR02912 9 KNAFRVTKVRGKTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKALQPIIEGLEINQ 88 (314)
T ss_pred hCCeEEeecCCceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHHHHHHHhhcccccc
Confidence 358888875 9999999999999999999999999999999999999999999999999999999999864 332
Q ss_pred ---cccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEE
Q psy3753 115 ---AIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIK 191 (928)
Q Consensus 115 ---~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~ 191 (928)
..+.+|+.+|||++||+++.|+.+++|+.++++.|.+.+. .+|+||||+|||||++|..+..+|+||++..
T Consensus 89 ~~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~------~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~~ 162 (314)
T TIGR02912 89 EDVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF------PNDYHVKIALTGCPNDCAKARMHDFGIIGMT 162 (314)
T ss_pred cccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh------cCCceEEEEEeCCCchhhHHHHhhccccccc
Confidence 2356789999999999999999999999999999988763 2578999999999999999999999998852
Q ss_pred e--------------------------------------------------------cCCeeeEEEEEcccCCC-CCccc
Q psy3753 192 N--------------------------------------------------------KLGKIGFCVIVGGGMGR-TPIIG 214 (928)
Q Consensus 192 ~--------------------------------------------------------~~~~~gf~v~vGG~~g~-~p~~g 214 (928)
. .....+|.+++||..|+ .|++|
T Consensus 163 ~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg~~g~~~p~~~ 242 (314)
T TIGR02912 163 EPQYDADRCIGCGACVKVCKKKAVGALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMGRTGKKNPRLG 242 (314)
T ss_pred CCceeCccCCcchHHHHhcChhhcCceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcCccCCCCcchh
Confidence 1 00123699999999997 59999
Q ss_pred ccccccCChHHHHHHHHHHHHHHHHhcCCCC-cCCCchhHHHHhhCHHHHHHHHHHH
Q psy3753 215 QIICKFLPWKHILTYIEAILRIYNQYGRRDN-IYKSRIKILLKSIGIENFQFQVNEE 270 (928)
Q Consensus 215 ~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~-r~~~Rl~~~~~r~G~e~f~~~~~~~ 270 (928)
..+..+++.++++.++++++++|++++++.+ +++|||+++++|+|.++|++.+.+.
T Consensus 243 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~eR~~~~i~r~g~~~~~~~~~~~ 299 (314)
T TIGR02912 243 EDFIKWVDEDSIVKIILNTYDYITEYIDKNAPGGKEHIGYIVDRTGYQEFKKWALKD 299 (314)
T ss_pred hhhhhhcCcchhHHHHHHHHHHHHHHHhccCCCccchHHHHHHHhhHHHHHHHHhhh
Confidence 9888999999999999999999999987655 4689999999999999999988543
No 36
>COG3749 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.3e-35 Score=275.14 Aligned_cols=160 Identities=37% Similarity=0.568 Sum_probs=137.6
Q ss_pred cccccccccceeeh-hhhhhhhcccchhhhccccccccccccchHHHhh-hcCCCCCceeEEeCCCcCHHHHHHHHhcCC
Q psy3753 526 LMCKIIKNDTIVND-NWKMLYENDFIEENVKLLEDHVIVPFKFLKKYLK-FNSNNNLNIGIWINSDEYSEELKCVLKKNP 603 (928)
Q Consensus 526 ~~eR~~k~~~i~r~-g~~~~~e~~~~~~~~~~~~~~~~~p~~~w~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 603 (928)
++.|+|+-..+.++ .|....+++-.+ +++..++|+..|-++.+ ..+++++++||||+||++|+.|.+.|
T Consensus 2 ~mtkl~~~~g~~eDd~w~~~~~~~~~~-----~~~~~ilpLa~wl~~~~e~~rs~~~~lgV~l~Pddeve~L~~~l---- 72 (167)
T COG3749 2 NMTKLIKLQGFVEDDPWTALTDEDGAP-----DEGDVILPLAAWLEHGEERRRSRAGRLGVWLAPDDEVEALAPDL---- 72 (167)
T ss_pred CccccccccceecCCceeeccccccCC-----CccCEEeEHHHHHhhchhhhhcccccceeeeCCccchhhhhccc----
Confidence 34566666666555 588766554322 46779999999988864 36677899999999999999996665
Q ss_pred CCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHhccCCcCccccc
Q psy3753 604 KQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQ 683 (928)
Q Consensus 604 ~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~yq 683 (928)
+++++|+|+||+|+||||||.|++||.|+||+|+|||.|+||.||..+|+|||||+|++.++..+.+.++++..++++||
T Consensus 73 ~~lalVAv~FP~F~DGRgyS~A~LLR~RlG~~GelRAVGDVLiDql~~M~RcGFDaFav~~~~~~~~l~~~l~~~~~~Yq 152 (167)
T COG3749 73 DRLALVAVDFPAFRDGRGYSKAELLRSRLGFQGELRAVGDVLIDQLPFMLRCGFDAFAVRNDVAIERLLEGLGGISVYYQ 152 (167)
T ss_pred ccceEEEEeccceecCccchHHHHHhhhccccchhhhhhhHHhhhhHHHHHcCCceeeecCcccHHHHhhcccCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhh
Q psy3753 684 TSADEKIPLNS 694 (928)
Q Consensus 684 ps~~~~~~l~~ 694 (928)
|++...+.++.
T Consensus 153 ~~a~p~p~~~r 163 (167)
T COG3749 153 PAADPRPKSWR 163 (167)
T ss_pred CCCCCcchhhh
Confidence 99994333444
No 37
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=9.8e-34 Score=332.96 Aligned_cols=222 Identities=18% Similarity=0.255 Sum_probs=195.5
Q ss_pred ccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhC-CCcEEeccCCCEEEccCCcCCHHHHHHHH
Q psy3753 318 FENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYS-FSELRVTHTQNIVLSDVTKDNLFNLWTEI 396 (928)
Q Consensus 318 ~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g-~g~irlT~~q~i~l~gi~~~~~~~~~~~L 396 (928)
+.+|++.. ++|+++|+|||||++|+ |.+|++||+.||++|++|| +|.+++|+||||||+||+.+++++++++|
T Consensus 50 ~~~~~G~~-~~~~~~g~fmvRvrip~-----G~lt~~Qlr~la~ia~~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L 123 (513)
T PRK09566 50 RLKWLGMF-WRPVTPGKFMLRLRVPN-----GILTSEQLRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRL 123 (513)
T ss_pred hheeeEEe-eEcCCCCeEEEEeccCC-----ccCCHHHHHHHHHHHHHhCCCCeEEEEcccceeecCCcHHHHHHHHHHH
Confidence 36676532 36678999999999865 9999999999999999999 68999999999999999999999999999
Q ss_pred HHCCCCCCCcc--cccceeccCCcccccccccchHHHHHHHHHHhc------ccCcCCCCCeEEEEecCCCCCccccccc
Q psy3753 397 KQYGLSESNIN--LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS------KDDQRNIGKISLNISGCINSCGHHHIGN 468 (928)
Q Consensus 397 ~~~Gl~~~~~~--~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~------~~~~~~~~k~ki~iSGCpn~C~~~~~aD 468 (928)
.+.||.+.+++ .+||+++||+++.|+.+++||++++.+|.++|. +.+..+|+||||+||||+|+|+++.++|
T Consensus 124 ~~~GL~~~~~~~d~vRnv~~~P~ag~~~~e~~D~~~la~~l~~~~~~~~~~~~~~~~LPrKfki~vsGc~~~c~~~~i~D 203 (513)
T PRK09566 124 KAVGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNPEFSNLPRKFNIAIAGGRDNSVHAEIND 203 (513)
T ss_pred HHcCCCchhccCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHhhcccCCCCcccCCCCceEEEEECCCCCcccccccc
Confidence 99999987664 599999999999999999999999999999874 3455678899999999999999999999
Q ss_pred EEEEeEeeCCCcEEEEEEcCCCCC-CCcccccccCCCCcccHHHHHHHHHHHHHHhccc----ccccccccceeehhhhh
Q psy3753 469 IGILGLNKNGNEYFQILIGGSQGN-KLNFGKIIGPSFSADQVPDIINRILKVYLRRCYL----MCKIIKNDTIVNDNWKM 543 (928)
Q Consensus 469 ig~ig~~~~~~~g~~i~vGG~~~~-~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~----~eR~~k~~~i~r~g~~~ 543 (928)
|||+++.+++..||+|++||+.|. .+.+|..+..+++++++++++++++++|++++.. .+|+ ...+.+.|+..
T Consensus 204 iG~~~~~~~~~~gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~av~~~f~~~g~r~~r~k~Rl--~~lv~~~G~e~ 281 (513)
T PRK09566 204 IAFVPAYKDGVLGFNVLVGGFFSSQRCAYAIPLNAWVKPDEVVRLCRAILEVYRDNGLRANRQKGRL--MWLIDEWGIEK 281 (513)
T ss_pred eEEEEEEECCeeEEEEEEecccCCCCCcCceeeeeecCHHHHHHHHHHHHHHHHHhCCcccchhhhH--HHHHHHhhHHH
Confidence 999998777778999999999876 4567988998999999999999999999998753 4677 67778878777
Q ss_pred hhhc
Q psy3753 544 LYEN 547 (928)
Q Consensus 544 ~~e~ 547 (928)
|.+.
T Consensus 282 f~~~ 285 (513)
T PRK09566 282 FRAA 285 (513)
T ss_pred HHHH
Confidence 6643
No 38
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=100.00 E-value=1.9e-34 Score=262.00 Aligned_cols=108 Identities=54% Similarity=0.892 Sum_probs=104.6
Q ss_pred eEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceee
Q psy3753 583 GIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVI 662 (928)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~ 662 (928)
||+|++|++|++|...| +++.+|+|+||+|+||||||+||+||+|+||+|+|||+|+|++||+.+|+|||||+|++
T Consensus 1 gv~l~~d~~~~~l~~~L----~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~GFdsf~l 76 (110)
T PF06073_consen 1 GVWLAPDDDPEELADDL----DRLPLIAIDFPKFTDGRGFSQARLLRERYGYTGELRAVGDVLRDQLFYLRRCGFDSFEL 76 (110)
T ss_pred CeecCCCCCHHHHHhhc----cCCCEEEEECCCcCCchHhHHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcCCCEEEe
Confidence 79999999999997777 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHhccCCcCccccccccccCCchhh
Q psy3753 663 RHDKNINSALHGLNIFSEKYQTSADEKIPLNS 694 (928)
Q Consensus 663 ~~~~~~~~~l~~~~~~~~~yqps~~~~~~l~~ 694 (928)
+++.+++.|++++..|+++||++++.+.|+..
T Consensus 77 ~~~~~~~~~~~~l~~fs~~YQ~~~~~~~Plfr 108 (110)
T PF06073_consen 77 REDQDPEDALAALSDFSVSYQPSADEPQPLFR 108 (110)
T ss_pred CCCCCHHHHHHHHhhCCcccCCCCCCCCcccc
Confidence 99999999999999999999999999999865
No 39
>PLN00178 sulfite reductase
Probab=100.00 E-value=2.2e-33 Score=332.77 Aligned_cols=253 Identities=12% Similarity=0.105 Sum_probs=210.7
Q ss_pred CcCCccCHHHHHHHHHHHHHHHHHHhcCCCCH---HHHhhccccceeeeecC-eeEEEEEcCCCccCHHHHHHHHHHHHH
Q psy3753 2 YHYDKYDHQLVKERVIQYRDQVRRRLSNELSE---EEFIVLRLQNGLYLQRY-AYMLRIAIPYGMLSSKQMRMLSYIAKK 77 (928)
Q Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~~~q~~-~~~vRir~p~G~lt~~ql~~la~iA~~ 77 (928)
|++++|+.+.++++++++. ..++.+ ..+....-..||++|++ .+++++++|+|+|+++|++.||+||++
T Consensus 359 ~li~~~G~e~f~~~ve~~~-------g~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grit~~~l~~La~iAe~ 431 (623)
T PLN00178 359 YLVHSWGIEKFRSVVEQYY-------GKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGVHVDNGRIKGEAKKALREVIEK 431 (623)
T ss_pred HHHHHHCHHHHHHHHHHHh-------cccccCCCCccccccccceeEEEccCCcEEEEEecCCeecCHHHHHHHHHHHHH
Confidence 6777777766666666543 222211 11111233479999987 788999999999999999999999999
Q ss_pred hCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCC
Q psy3753 78 YDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHP 157 (928)
Q Consensus 78 yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~ 157 (928)
||. .++||++|||+|+||+.++++++.+.|.++||.+....+..+|++++||+...|+.++.|+..++..|.+.+...-
T Consensus 432 yg~-~iRlT~~Qnlil~~I~~~~~~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~l~~~~ 510 (623)
T PLN00178 432 YNL-PVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKRVRAMF 510 (623)
T ss_pred hCC-cEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 996 7999999999999999999999999999999986555678899999999999999999999999987776553211
Q ss_pred ccccC--CCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHH
Q psy3753 158 EFAYL--PRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILR 235 (928)
Q Consensus 158 ~~~~L--P~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~ 235 (928)
....| |.||||+||||||+|++++++||||+|... .+|+||+||+. ..+++|+.+...++.+++.++++.++.
T Consensus 511 ~~~~l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~~~----~~Y~I~lGG~~-~~~~la~~~~~~V~~eei~~~le~ll~ 585 (623)
T PLN00178 511 NKVGLKYDESVVVRMTGCPNGCARPYMAELGFVGDGP----NSYQIWLGGTP-NQTRLAEPFMDKVKVDDLEKVLEPLFY 585 (623)
T ss_pred hhcCCCCCCceEEEEeCCCccccccccCcEEEEcCCC----CeEEEEECCCC-CcccccchhhcCcCHHHHHHHHHHHHH
Confidence 11234 599999999999999999999999999533 28999999984 568899988889999999999999999
Q ss_pred HHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHH
Q psy3753 236 IYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEW 271 (928)
Q Consensus 236 ~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~ 271 (928)
.|++++.. +|||+++++|+|.+.|++.+..+.
T Consensus 586 ~y~~~r~~----~E~f~df~~R~G~e~~~~~~~~~~ 617 (623)
T PLN00178 586 MWKQQRQE----KESFGDFTNRVGFEALKEYIESYA 617 (623)
T ss_pred HHHHhCcC----CCCHHHHHHHcCcHHHHHHHHHhc
Confidence 99988765 899999999999999999998754
No 40
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=2.6e-33 Score=330.93 Aligned_cols=248 Identities=16% Similarity=0.162 Sum_probs=204.9
Q ss_pred CCcCCccCHHHHHHHHHHHHHHHHHHhcCCCC---HHHHhhccccceeeeecC-eeEEEEEcCCCccCHH---HH-HHHH
Q psy3753 1 MYHYDKYDHQLVKERVIQYRDQVRRRLSNELS---EEEFIVLRLQNGLYLQRY-AYMLRIAIPYGMLSSK---QM-RMLS 72 (928)
Q Consensus 1 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~q~~-~~~vRir~p~G~lt~~---ql-~~la 72 (928)
+|++++|+.+.++++++++ +.-.+. +..+...+-..||++|.+ .||+++++|+|+|+++ |+ +.||
T Consensus 316 k~li~~~G~e~f~~~ve~~-------~~~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grl~~~~~~~l~~~La 388 (577)
T TIGR02042 316 KYLISDWGIEKFREVVEQY-------FGKKIAPVRELPEFEYKDYLGWHEQGDGKWFLGLHIDSGRVKDDGNWQLKKALR 388 (577)
T ss_pred HHHHHHHCHHHHHHHHHHH-------hccccCCcccCCcccccccceEEECCCceEEEEEEecCceecCCchHHHHHHHH
Confidence 3677777766666666543 322221 111111233579999987 8999999999999996 44 7999
Q ss_pred HHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHH----HHHH
Q psy3753 73 YIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRP----YAEI 148 (928)
Q Consensus 73 ~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~----la~~ 148 (928)
+||++||. .++||++|||+|+||+.++++++.+.|++.||.+.+++++.+||+++||+...|+.++.|+.. +++.
T Consensus 389 eIA~~yg~-~irlT~~Qnl~l~~V~~~~~~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~ 467 (577)
T TIGR02042 389 EIVEKYNL-PVRLTPNQNIILYDIQPEWKRAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKR 467 (577)
T ss_pred HHHHHhCC-CEEEcCCCCeEECCCCHHHHHHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHH
Confidence 99999996 699999999999999999999999999999998766788999999999999999999999985 4444
Q ss_pred HHHHhccCCccccC-CCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHH
Q psy3753 149 LRQWSTFHPEFAYL-PRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHIL 227 (928)
Q Consensus 149 l~~~~~~~~~~~~L-P~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~ 227 (928)
+.+.+.. ..| |+||||+||||||+|++++++||||++... .||+||+||+.+ .+++|+.+..++++++++
T Consensus 468 l~~l~~~----~~l~~~~i~I~vSGCpn~Ca~p~iaDIG~vG~~~----~~y~l~lGG~~~-~~rla~~~~~~vp~~ei~ 538 (577)
T TIGR02042 468 IRALLEK----VGLPDEHFVVRMTGCPNGCARPYMAELGFVGSAP----NSYQVWLGGSPN-QTRLARPFIDKLKDGDLE 538 (577)
T ss_pred HHHHHHh----cCCCCCCcEEEEECCCccccCCCcCcEEEECCCC----CcEEEEECCCCC-cccchhHHhcCcCHHHHH
Confidence 4444421 346 599999999999999999999999999654 279999999876 577898888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHH
Q psy3753 228 TYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNE 269 (928)
Q Consensus 228 ~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~ 269 (928)
++++++++.|++++.. +|||.++++|+|.++|++.+++
T Consensus 539 ~vl~~ll~~y~~~r~~----~E~f~~fi~R~G~e~~~~~l~~ 576 (577)
T TIGR02042 539 KVLEPLFVHFKQSRQS----GESFGDFCDRVGFDALREFVES 576 (577)
T ss_pred HHHHHHHHHHHHhccC----CCCHHHHHHHcCcHHHHHHHhc
Confidence 9999999999987754 7999999999999999998764
No 41
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=1.4e-32 Score=324.06 Aligned_cols=220 Identities=17% Similarity=0.193 Sum_probs=191.3
Q ss_pred ccccccccccce--eeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhC-CCcEEeccCCCEEEccCCcCCHHHHHH
Q psy3753 318 FENWVHQNTKKH--KINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYS-FSELRVTHTQNIVLSDVTKDNLFNLWT 394 (928)
Q Consensus 318 ~~~w~~~gv~~q--k~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g-~g~irlT~~q~i~l~gi~~~~~~~~~~ 394 (928)
+.+|.+ +|.| +++|+||+||++|+ |.+|++||+.|++||++|| +|.+++|+||||||+||+.++++++++
T Consensus 120 r~kw~G--l~~~~~~~~~~fMlRvRiPg-----G~lt~~Qlr~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~ 192 (587)
T PLN02431 120 RLKWLG--LFHRRKHQYGRFMMRLKLPN-----GVTTSAQTRYLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAILK 192 (587)
T ss_pred hhhhee--eeeecCCCCCceEEEEecCC-----cccCHHHHHHHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHHHH
Confidence 467764 4544 46899999999865 9999999999999999999 589999999999999999999999999
Q ss_pred HHHHCCCCCCCcc--cccceeccCCcccccccccchHHHHHHHHHHhc------ccCcCCCCCeEEEEecCCCCCccccc
Q psy3753 395 EIKQYGLSESNIN--LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS------KDDQRNIGKISLNISGCINSCGHHHI 466 (928)
Q Consensus 395 ~L~~~Gl~~~~~~--~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~------~~~~~~~~k~ki~iSGCpn~C~~~~~ 466 (928)
+|.+.||.+.+++ .+||+++||+++.|+.+++||.+++.+|.+.|. +.+.++|+||||.||||+++|+++.+
T Consensus 193 ~L~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~~Dt~pla~~l~~~~~~~~~~~~~~~~LPrKfkiavsG~~~~~~~~~~ 272 (587)
T PLN02431 193 GLEEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSDYITNNGRGNPEITNLPRKWNVCVVGSHDLFEHPHI 272 (587)
T ss_pred HHHHcCCCchhccCCCCCCcccCCCCCCCccccccHHHHHHHHHHHhhhcccCCcccccCCCCeEEEEecCccccccccc
Confidence 9999999998775 499999999999999999999999999999872 55667889999999999999999999
Q ss_pred ccEEEEeEeeCCCcEEEEEEcCCCCCCC-cccccccCCCCcccHHHHHHHHHHHHHHhcccc----cccccccceeehhh
Q psy3753 467 GNIGILGLNKNGNEYFQILIGGSQGNKL-NFGKIIGPSFSADQVPDIINRILKVYLRRCYLM----CKIIKNDTIVNDNW 541 (928)
Q Consensus 467 aDig~ig~~~~~~~g~~i~vGG~~~~~~-~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~----eR~~k~~~i~r~g~ 541 (928)
+||||+++.+++..||+|+|||+.|..+ ..+..+..+++++++++++++++++|++++.+. .|+ ...|.+.|+
T Consensus 273 nDigf~~~~~~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G~R~~R~kaRl--k~li~~~G~ 350 (587)
T PLN02431 273 NDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKTRM--MWLIDELGV 350 (587)
T ss_pred cceEEEEEEECCceEEEEEEeCCcCCCCccccchhhcccCHHHHHHHHHHHHHHHHHhCCccchhhhHH--HHHHHHhhH
Confidence 9999999887666799999999988643 356667778999999999999999999987653 455 566666666
Q ss_pred hhhhh
Q psy3753 542 KMLYE 546 (928)
Q Consensus 542 ~~~~e 546 (928)
..|.+
T Consensus 351 e~f~~ 355 (587)
T PLN02431 351 EGFRS 355 (587)
T ss_pred HHHHH
Confidence 66554
No 42
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.6e-32 Score=338.11 Aligned_cols=203 Identities=19% Similarity=0.375 Sum_probs=187.1
Q ss_pred ceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcc
Q psy3753 328 KHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNIN 407 (928)
Q Consensus 328 ~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~ 407 (928)
.|| +|+|||++++|+ |++|++||+.||++|++||. .+++|++|||+|+||+.+++++++++|.++||.+++++
T Consensus 559 ~Qk-~g~~~v~~~~p~-----G~lt~~ql~~ia~iA~kyg~-~~~iT~~Q~i~L~~i~~~~l~~v~~~L~~~Gl~~~~~~ 631 (847)
T PRK14989 559 IQK-DGTYSVIPRSAG-----GEITPEGLMAVGRIAREFNL-YTKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGHAY 631 (847)
T ss_pred ccc-CCeEEEEEEcCC-----cEeCHHHHHHHHHHHHHHCC-cEEEcCCCceEeCCCCHHHHHHHHHHHHHCCCCcCCCC
Confidence 355 699999998855 99999999999999999994 79999999999999999999999999999999998764
Q ss_pred --cccceeccCCcccccccccchHHHHHHHHHHhc-ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEeeCCCcEEEE
Q psy3753 408 --LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS-KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQI 484 (928)
Q Consensus 408 --~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~-~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i 484 (928)
.+|++++|||++.|++++.||.+++.+|.++|. ..+| +||||+||||||+|++|+++||||+|+. .||+|
T Consensus 632 g~~vr~v~aC~G~~~C~~g~~dt~~la~~l~~~~~~~~~P---~k~ki~vSGC~~~C~~~~i~DiG~i~~~----~G~~v 704 (847)
T PRK14989 632 AKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTP---HKMKFGVSGCTRECAEAQGKDVGIIATE----KGWNL 704 (847)
T ss_pred CCCcCceeeCCCCCccccccccHHHHHHHHHHHhccCCCC---CceEEEEeCCcccccccccccEEEEEec----CceEE
Confidence 599999999999999999999999999999986 3444 4999999999999999999999999975 57999
Q ss_pred EEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcccccccccccceeeh--hhhhhhh
Q psy3753 485 LIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCKIIKNDTIVND--NWKMLYE 546 (928)
Q Consensus 485 ~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~--g~~~~~e 546 (928)
|+||+.|..|++|..+..+++.+++++++++++++|++++++.||+ ++.++|. |+..+.+
T Consensus 705 ~vGG~~G~~~~~g~~l~~~~~~~~v~~~i~~~l~~y~~~~~~~er~--~~~~~r~~~g~~~~~~ 766 (847)
T PRK14989 705 YVCGNGGMKPRHADLLAADLDRETLIKYLDRFMMFYIRTADKLQRT--AVWLENLEGGIDYLKA 766 (847)
T ss_pred EECCCCCCCCcceeeecCCCCHHHHHHHHHHHHHHHHHhCcccccH--HHHHHHhhchHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999 8765543
No 43
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.98 E-value=1.9e-32 Score=337.85 Aligned_cols=204 Identities=22% Similarity=0.421 Sum_probs=185.5
Q ss_pred cceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCc
Q psy3753 327 KKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNI 406 (928)
Q Consensus 327 ~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~ 406 (928)
++|| +|.|+|++++|+ |++|++||+.|+++|++||.|.+++|++|||+|+|++.+++++++++|.+.|+.....
T Consensus 547 ~~qk-~g~~~v~~~~~~-----G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L~~~gl~~~~g 620 (785)
T TIGR02374 547 NIQK-DGTYSVIPRMYG-----GRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYEHAYG 620 (785)
T ss_pred cccc-CCceEEEEecCC-----cccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHHHhCCCCCCCC
Confidence 3444 599999988855 9999999999999999999999999999999999999999999999999999974444
Q ss_pred ccccceeccCCcccccccccchHHHHHHHHHHhc-ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEeeCCCcEEEEE
Q psy3753 407 NLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS-KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQIL 485 (928)
Q Consensus 407 ~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~-~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i~ 485 (928)
+.+|++++|+|+++|++++.||++++.+|.++|. ..+| +||||+||||||+|++|+++||||+|+. .||+||
T Consensus 621 ~~~r~v~aC~G~~~C~~g~~ds~~la~~l~~~~~~~~~p---~k~ki~vSGC~~~C~~~~~~DiG~i~~~----~g~~v~ 693 (785)
T TIGR02374 621 KALRTVKTCVGSQWCRYGNQDSVQLAIQLERRYEGLRTP---HKIKIGVSGCERECAEAAGKDVGVIATE----KGWNLY 693 (785)
T ss_pred CCccCcccCCCccccCcchhhHHHHHHHHHHHhcccCCC---CceEEEEECCccccchhhhCcEEEEEec----CCeEEE
Confidence 4699999999999999999999999999999987 4444 4999999999999999999999999975 579999
Q ss_pred EcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhh
Q psy3753 486 IGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLY 545 (928)
Q Consensus 486 vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~ 545 (928)
+||+.|..|++|+.+..+++.+++++++++++++|++++.+.||+ ...++|.|+..|.
T Consensus 694 vGG~~g~~~~~a~~l~~~~~~e~v~~~i~~~l~~y~~~~~~~er~--~~~i~r~G~~~~~ 751 (785)
T TIGR02374 694 VGGNGGTHPRHGDLLAVDEDEETLIGYIDRFLQYYRETADYLERT--APWLERLGIDHVR 751 (785)
T ss_pred ECCcCCCCCcceeeecCCCCHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHhChHHHH
Confidence 999999899999999999999999999999999999999999999 8888888765544
No 44
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=99.98 E-value=8.1e-32 Score=306.94 Aligned_cols=212 Identities=16% Similarity=0.138 Sum_probs=181.1
Q ss_pred ccccccccce-eeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHH
Q psy3753 320 NWVHQNTKKH-KINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQ 398 (928)
Q Consensus 320 ~w~~~gv~~q-k~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~ 398 (928)
+|++.-++|+ +++| ||+||++|+ |++|++||++|+++|++||+|.+++|+||||||+||+.+ +++++++|.+
T Consensus 3 ~~cpg~~~~~~~~dg-~mvRvr~p~-----G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l~~ 75 (390)
T TIGR02435 3 GACPGLLRPMQAGDG-LLVRVRLPG-----GRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQALLA 75 (390)
T ss_pred CcCcccccccccCCe-eEEEEecCC-----CccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHHHH
Confidence 4665545555 4455 799999865 999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCCcc--cccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccccccEEEEeE
Q psy3753 399 YGLSESNIN--LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHHIGNIGILGL 474 (928)
Q Consensus 399 ~Gl~~~~~~--~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~ 474 (928)
.||.+.+++ .+||+++||++..|+.+++||++++.+|.+.|. +.+..+|+||||+||||+|+|++++++||||+++
T Consensus 76 ~GL~~~~~~g~~~Rnv~~cp~~g~~~~~~~dt~~la~~l~~~l~~~~~~~~LPrKfki~vsgc~~~c~~~~~~DIG~~~~ 155 (390)
T TIGR02435 76 AGLGAAGAAADDIRNIEVSPLAGIDPGEIADTRPLAAELRAALENERALLELPPKFSVAIDGGGRLVLLGDTADVRLQAL 155 (390)
T ss_pred CCCCCccccCCcccccccCccccCCCccccchHHHHHHHHHHHhcChhhhcCCCceEEEEECCCccccCCCCCCEEEEEE
Confidence 999885544 599999999999999999999999999999987 4455678899999999999999999999999998
Q ss_pred eeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhhh
Q psy3753 475 NKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLYE 546 (928)
Q Consensus 475 ~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~e 546 (928)
.+++..+|+|++||..+..... .+++.+++++++++++++|++++. .+|+ ...+.+.++..|.+
T Consensus 156 ~~~~~~gf~v~vGG~~~~~~~~-----~~v~~~~v~~~v~av~~~~~~~g~-~aR~--k~li~~~g~e~~~~ 219 (390)
T TIGR02435 156 TTGAGVAWVVSLAGISTSARSL-----VTVAPDAAVPVAVALLRVFVELGG-AARG--RDLDDAFLFALALE 219 (390)
T ss_pred ecCCEEEEEEEEecCCCCCCce-----EEeCHHHHHHHHHHHHHHHHHhCc-ccHH--HHHHHHhHHHHHHH
Confidence 7655568999999965432222 368999999999999999999987 4887 66667777666554
No 45
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=99.97 E-value=2.1e-31 Score=314.42 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=178.7
Q ss_pred EEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcc--cccc
Q psy3753 334 YIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNIN--LLTD 411 (928)
Q Consensus 334 ~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~--~~r~ 411 (928)
.||+||++|+ |++|++||+.||++|++||+|.+++|+||||||+||+.+++++++++|.+.||.+.+++ .+||
T Consensus 61 ~fmvRvripg-----G~lt~~Ql~~la~ia~~yg~g~i~lTtRQniQl~gI~~~~l~~v~~~L~~~GL~t~~a~gd~~Rn 135 (541)
T TIGR02041 61 QFMLRCRLPG-----GVITPKQWLAIDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAIHSAGLDSIATCGDVNRN 135 (541)
T ss_pred eeEEEEecCC-----cEECHHHHHHHHHHHHHhCCCeEEEecccceEEcCCChhHHHHHHHHHHHcCCCccccCCCCCCc
Confidence 7999999865 99999999999999999999999999999999999999999999999999999987764 4899
Q ss_pred eeccCCcccccccccchHHHHHHHHHHhccc-------------------------CcCCCCCeEEEEecCCCCCccccc
Q psy3753 412 IICCPGGDFCSLANTKSLPIAKNIMKYFSKD-------------------------DQRNIGKISLNISGCINSCGHHHI 466 (928)
Q Consensus 412 v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~-------------------------~~~~~~k~ki~iSGCpn~C~~~~~ 466 (928)
|+ |+|.+.|..+..|+.+++.+|.+.|.+. +.++|+||||+|||||++|+.+.+
T Consensus 136 V~-c~~~p~~~~~~~e~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPrKfKi~isg~~~~~~~~~~ 214 (541)
T TIGR02041 136 VL-CTSNPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVAGTEEVEPIYGPTYLPRKFKTGVVIPPINDVDVYA 214 (541)
T ss_pred ee-CCCCcccCCCHHHHHHHHHHHHHHhccCchhHHHHhhhcccccCCcccCccccccCCCCCcEEEEECCCCccccccc
Confidence 87 9999999999999999999998765310 234888999999999999999999
Q ss_pred ccEEEEeEeeCC-CcEEEEEEcCCCCC-------CCcccccccCCCCcccHHHHHHHHHHHHHHhccccc----cccccc
Q psy3753 467 GNIGILGLNKNG-NEYFQILIGGSQGN-------KLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMC----KIIKND 534 (928)
Q Consensus 467 aDig~ig~~~~~-~~g~~i~vGG~~~~-------~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~e----R~~k~~ 534 (928)
+||||+++..++ ..||+|++||+.|. .|++|..+. +++++++++++++++++|++++...+ |+ ..
T Consensus 215 ~DiG~~a~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ai~~~~~~~g~r~~r~~aRl--k~ 291 (541)
T TIGR02041 215 NDLGFVAIADNGKLIGFNVLIGGGLGMTHGNKATYPRLANEIG-FIPPEHTLAVAEAIVTTQRDFGNRTDRKNART--KY 291 (541)
T ss_pred cceEEEEEEeCCcEEEEEEEEeccccCCCCCcCCCCccccccC-CCCHHHHHHHHHHHHHHHHHhCCccchhhhhH--HH
Confidence 999999987654 35999999999774 378898886 89999999999999999999886554 56 67
Q ss_pred ceeehhhhhhhh
Q psy3753 535 TIVNDNWKMLYE 546 (928)
Q Consensus 535 ~i~r~g~~~~~e 546 (928)
.+.+.|+..|.+
T Consensus 292 li~~~G~e~f~~ 303 (541)
T TIGR02041 292 TIDRMGLDTFKA 303 (541)
T ss_pred HHHHhCHHHHHH
Confidence 777777766654
No 46
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=99.97 E-value=2.2e-31 Score=316.53 Aligned_cols=209 Identities=14% Similarity=0.097 Sum_probs=185.9
Q ss_pred cceeeeecC-eeEEEEEcCCCccCHH----HHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccc
Q psy3753 42 QNGLYLQRY-AYMLRIAIPYGMLSSK----QMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAI 116 (928)
Q Consensus 42 ~~G~~~q~~-~~~vRir~p~G~lt~~----ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~ 116 (928)
+.||.+|++ .|+|++++|+|+||++ |++.||++|++|| +.|++|++|||+|++|+.++++++.+.|+++||.+.
T Consensus 343 ~~G~~~q~~G~~~v~v~vp~Grl~~~~~~~~l~~La~iA~~yg-~~irlT~~Qnl~l~~i~~~~~~~l~~~L~~~gl~~~ 421 (569)
T PRK13504 343 RLGWVEGIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHK-GDFRLTANQNLIIANVPPSDKAKIEALLREYGLIDG 421 (569)
T ss_pred eeEEEecCCCcEEEEEEecCEEecCCCcHHHHHHHHHHHHHhC-CEEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCC
Confidence 479999976 7899999999999999 9999999999999 789999999999999999999999999999999865
Q ss_pred cccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccC-CCceEEEEEecCCCcccccccceEEEEEEecCC
Q psy3753 117 QTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYL-PRKFKISISGSQEDRAAIFVHDIGLRAIKNKLG 195 (928)
Q Consensus 117 ~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~L-P~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~ 195 (928)
...++.+|++++||++..|+.++.||..++..|.+.+...-....| |.||+|+||||||+|++++++||||+|...+
T Consensus 422 ~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~~~~l~~~~i~I~vSGCpn~Ca~~~iaDIG~vG~~~~-- 499 (569)
T PRK13504 422 VEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLSDEHIVIRMTGCPNGCARPYLAEIGLVGKAPG-- 499 (569)
T ss_pred CCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHhhcCCCCCceEEEEeCCcccccccccCcEEEEecCCC--
Confidence 4447889999999999999999999998777666554321112457 8999999999999999999999999997542
Q ss_pred eeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCH
Q psy3753 196 KIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGI 260 (928)
Q Consensus 196 ~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~ 260 (928)
+|+|++||+.+ .+++|..+...++.+++.++++.+++.|++++.. .|||.++++|+|.
T Consensus 500 --~y~i~lGG~~~-~~~~~~~~~~~v~~~~v~~~l~~ll~~y~~~~~~----~E~f~~~~~R~g~ 557 (569)
T PRK13504 500 --RYNLYLGGSFN-GTRLPKMYRENITEEEILATLDPLLGRWAKEREP----GEGFGDFVIRAGI 557 (569)
T ss_pred --eEEEEECCCCC-CCccchHhhcCCCHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHHcch
Confidence 79999999985 4789998888999999999999999999998764 7999999999998
No 47
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=99.97 E-value=5.3e-31 Score=291.94 Aligned_cols=213 Identities=16% Similarity=0.323 Sum_probs=183.8
Q ss_pred ccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHC--CC
Q psy3753 324 QNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQY--GL 401 (928)
Q Consensus 324 ~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~--Gl 401 (928)
.|+..|+++|+||+||++++ |++|++||+.||++|++||+|.+|+|++|||+|+||+.++++++++.|.+. |+
T Consensus 10 ~~~~~~~~~g~~~vrv~~p~-----G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~~L~~~~~gl 84 (314)
T TIGR02912 10 NAFRVTKVRGKTAIRVRVPG-----GILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKALQPIIEGL 84 (314)
T ss_pred CCeEEeecCCceEEEEEccc-----eecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHHHHHHHhhcc
Confidence 47889999999999999865 999999999999999999999999999999999999999999999999753 33
Q ss_pred C-------CCCcc-cccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCCeEEEEecCCCCCcccccccEEEEe
Q psy3753 402 S-------ESNIN-LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIGNIGILG 473 (928)
Q Consensus 402 ~-------~~~~~-~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig 473 (928)
. ++.++ .+|++++|+|++.|+.+++||++++.+|.+.+. ..| .||||+||||||+|+++..+||||+|
T Consensus 85 ~~~~~~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~-~~~---~k~ki~iSGCp~~C~~~~~~DiG~~g 160 (314)
T TIGR02912 85 EINQEDVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF-PND---YHVKIALTGCPNDCAKARMHDFGIIG 160 (314)
T ss_pred cccccccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh-cCC---ceEEEEEeCCCchhhHHHHhhccccc
Confidence 2 22233 388999999999999999999999999998874 223 39999999999999999999999998
Q ss_pred Eee---------------------------------------------------------CCCcEEEEEEcCCCCC-CCc
Q psy3753 474 LNK---------------------------------------------------------NGNEYFQILIGGSQGN-KLN 495 (928)
Q Consensus 474 ~~~---------------------------------------------------------~~~~g~~i~vGG~~~~-~~~ 495 (928)
... +.+.+|.+++||+.+. .|+
T Consensus 161 ~~~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg~~g~~~p~ 240 (314)
T TIGR02912 161 MTEPQYDADRCIGCGACVKVCKKKAVGALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMGRTGKKNPR 240 (314)
T ss_pred ccCCceeCccCCcchHHHHhcChhhcCceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcCccCCCCcc
Confidence 631 0124699999999986 589
Q ss_pred ccccccCCCCcccHHHHHHHHHHHHHHh---c--ccccccccccceeehhhhhhhhc
Q psy3753 496 FGKIIGPSFSADQVPDIINRILKVYLRR---C--YLMCKIIKNDTIVNDNWKMLYEN 547 (928)
Q Consensus 496 ~g~~~~~~v~~~e~~~~i~~l~~~y~e~---~--~~~eR~~k~~~i~r~g~~~~~e~ 547 (928)
+|..+..+++++++++++++++++|+++ + ...||+ ++.|+|.|+..|.+.
T Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~eR~--~~~i~r~g~~~~~~~ 295 (314)
T TIGR02912 241 LGEDFIKWVDEDSIVKIILNTYDYITEYIDKNAPGGKEHI--GYIVDRTGYQEFKKW 295 (314)
T ss_pred hhhhhhhhcCcchhHHHHHHHHHHHHHHHhccCCCccchH--HHHHHHhhHHHHHHH
Confidence 9998888899999999999999999885 2 246899 999999999888643
No 48
>PRK08576 hypothetical protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=293.71 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=145.2
Q ss_pred HHHhcC--CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHh
Q psy3753 706 IVTDYK--PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKN 783 (928)
Q Consensus 706 ~~~~~~--~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~ 783 (928)
.+++|+ +++|+|||||||+|+|||+.+...++.++|+|||.+||+|+++++++++++|+++++... ........+
T Consensus 228 ~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~~V~aV~iDTG~e~pet~e~~~~lae~LGI~lii~~v---~~~~~~~~~ 304 (438)
T PRK08576 228 FLRKFEEWTVIVPWSGGKDSTAALLLAKKAFGDVTAVYVDTGYEMPLTDEYVEKVAEKLGVDLIRAGV---DVPMPIEKY 304 (438)
T ss_pred HHHHcCCCCEEEEEcChHHHHHHHHHHHHhCCCCEEEEeCCCCCChHHHHHHHHHHHHcCCCEEEccc---CHHHHhhhc
Confidence 345565 899999999999999999999887899999999999999999999999999999877211 122223344
Q ss_pred CCCCCccchhhhhhhhhhcccchHHHhhcC--CcEEEeeecccccccccCCcceeec-CCCCCeEEEEeCcCCCHHHHHH
Q psy3753 784 GINAFYDSVQMRKKCCYIRKVKPLKKALIG--NKSWITGQRRTQSITRSNLVLKEKD-IIHNGIIKFNPLYNWLEKDIWN 860 (928)
Q Consensus 784 G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~--~~~~i~G~R~~ES~~R~~~~~~~~d-~~~~~~~~~~PI~dWt~~DVw~ 860 (928)
|.+. ....||..+|..||.+++++ .+++++|.|++||..|+..+....+ ...++..+++||++|+++|||.
T Consensus 305 g~p~------~~~rcCt~lK~~pL~raake~g~~~iatG~R~dES~~R~~~p~v~~~~~~~~~v~rI~PL~~Wte~DV~~ 378 (438)
T PRK08576 305 GMPT------HSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGESARRRLRPPVVERKTNFGKILVVMPIKFWSGAMVQL 378 (438)
T ss_pred CCCC------cccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHhHHhhcCCcccccccCCCCeEEEeChhhCCHHHHHH
Confidence 4322 12457778999999999974 5789999999999999887655433 2124788999999999999999
Q ss_pred HHHHCCCCCChhhhcCCCccCcccCCCCCC
Q psy3753 861 YINTYNVPYNTLYDNGYLSIGCEPCTRPTE 890 (928)
Q Consensus 861 Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~ 890 (928)
|+..++||+||||++||+|+||++||....
T Consensus 379 YI~~~gLP~npLY~~Gy~rIGC~~Cp~~~~ 408 (438)
T PRK08576 379 YILMNGLELNPLYYKGFYRLGCYICPSLRS 408 (438)
T ss_pred HHHHhCCCCCcHHhCCCCccCCcCCcchHh
Confidence 999999999999999999999999997754
No 49
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.96 E-value=3.1e-29 Score=253.41 Aligned_cols=167 Identities=35% Similarity=0.564 Sum_probs=140.2
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCC---CceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhH-HHHHhCCCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNF---DINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNN-YIFKNGINA 787 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~---~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~-~~~~~G~~~ 787 (928)
+++|+|||||||+|||||+.+... ++.++|+|||.++|+|++|++++.+.||++++++.+....... .....+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 78 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGF-- 78 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhcc--
Confidence 478999999999999999999877 8999999999999999999999999999999998876554211 0111111
Q ss_pred CccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHC
Q psy3753 788 FYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTY 865 (928)
Q Consensus 788 ~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~ 865 (928)
..+....++||..+|..|+.++++ +..++++|+|++||..|..+.........++..+++||++|+.+|||+|++.+
T Consensus 79 -~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~~~~~~~~~~~~~~~~~Pl~~w~~~di~~~~~~~ 157 (173)
T cd01713 79 -PLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALLPVVWTDDGKGGILKVNPLLDWTYEDVWAYLARH 157 (173)
T ss_pred -CCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhCccccccCCCCCcEEEcchhcCCHHHHHHHHHHc
Confidence 112235789999999999999997 67899999999999999987654222224678899999999999999999999
Q ss_pred CCCCChhhhcCCCccC
Q psy3753 866 NVPYNTLYDNGYLSIG 881 (928)
Q Consensus 866 ~lp~npLYd~Gy~riG 881 (928)
++|+|+||++||+|+|
T Consensus 158 ~l~~~~ly~~g~~~~g 173 (173)
T cd01713 158 GLPYNPLYDQGYRSIG 173 (173)
T ss_pred CCCCCHHHHcCCCCCC
Confidence 9999999999999987
No 50
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.96 E-value=3.5e-29 Score=250.16 Aligned_cols=152 Identities=39% Similarity=0.611 Sum_probs=134.5
Q ss_pred cCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeee
Q psy3753 119 SGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIG 198 (928)
Q Consensus 119 ~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~g 198 (928)
+|+++|||++||+++.|+.++.|+.++++.|.+++..++....||+||||+|||||++|+.++++||||++.....+..|
T Consensus 1 ~g~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~~g 80 (157)
T PF01077_consen 1 SGDTVRNVTACPGSGFCPLALIDTKPLARELEDYLEERFEDPNLPRKFKIAISGCPNSCARPQINDIGFIGVKKPNGEEG 80 (157)
T ss_dssp -SSSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCSCSSS-BEEEEESSTTSTTSGGGSSEEEEEEEESTCEEE
T ss_pred CCCCCcccccCCChhhCchHHhCHHHHhhHhhhcccccccccccccccccceeecccccccccccccccceeeeccccce
Confidence 48999999999999999999999999999999888776677899999999999999999999999999999988555559
Q ss_pred EEEEEcccCCCCCccccccc--ccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHh
Q psy3753 199 FCVIVGGGMGRTPIIGQIIC--KFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWK 272 (928)
Q Consensus 199 f~v~vGG~~g~~p~~g~~l~--~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~ 272 (928)
|+|++||++|++|..+..+. .+++.+++++++++++++|+ +++.++.++||+++++|+|.++|+++++++++
T Consensus 81 ~~v~vGG~~g~~~~~~~~~~~~~~~~~ee~~~~i~~il~~y~--~~~~~~~~er~~~~i~r~G~e~~~~~v~~~~~ 154 (157)
T PF01077_consen 81 FDVYVGGGLGRHPRLGRELALAGFVPEEEVLEVIEAILEYYR--GNREARKKERFKDFIERLGFEKFREEVEERLG 154 (157)
T ss_dssp EEEEES-BESTSTBEBEEEEEEEEEEGGGHHHHHHHHHHHHH--S-HSSGTT-SHHHHHHHHHHHHHHHHHHHTSC
T ss_pred eeeeecccccCCCCccceeeccccccHHHHHHHHHHHHHHHH--HhccCCCCCCHHHHHHHHCHHHHHHHHHHHhC
Confidence 99999999999999998887 58899999999999999999 66666779999999999999999999987654
No 51
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=99.96 E-value=5.1e-29 Score=281.87 Aligned_cols=187 Identities=17% Similarity=0.267 Sum_probs=144.0
Q ss_pred HHHHHHHHhc-CCeEEEEcChHHHHHHHHHHHhcC---------CCceEEEEcCCCChHHHHHHHHHHH-------HHcC
Q psy3753 701 DALNNIVTDY-KPAVFASSLAAEDMVLTDLILRNN---------FDINIFTLNTGRLHSETLNMLNKIY-------LTYK 763 (928)
Q Consensus 701 ~~I~~~~~~~-~~~~vs~SGGKDS~vll~L~~~~~---------~~i~vvf~DTg~efpeT~~~i~~~~-------~~~g 763 (928)
+.|++++... .+++|+|||||||+|+|+|+.++. +.+.|+|.|||.|||+|++|++++. +++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666544 478999999999999999998862 4688999999999999999997643 4556
Q ss_pred CeE--EEEecCchh-hhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcC------CcEEEeeecccccccccCCcc
Q psy3753 764 YKI--KVYYPLNSE-VNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIG------NKSWITGQRRTQSITRSNLVL 834 (928)
Q Consensus 764 ~~i--~~~~p~~~~-~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~------~~~~i~G~R~~ES~~R~~~~~ 834 (928)
+++ +++.|.... +| ....| .+++.+....+|||..+|+.|+.+++++ ..++++|+|++||.+|++...
T Consensus 83 lpi~~~~v~P~~~~~Fw--v~liG-rG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~~RA~~m~ 159 (447)
T TIGR03183 83 LPIEPHRLTPEIKDTFW--VNLIG-KGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQARAAVME 159 (447)
T ss_pred CCeEEEecCCCcchHHH--HHHhc-CCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHHHHHhhhh
Confidence 554 566676443 33 33344 3555455568999999999999999863 468999999999999998621
Q ss_pred ----------eeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCC-------hhhhc------------------CCCc
Q psy3753 835 ----------KEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYN-------TLYDN------------------GYLS 879 (928)
Q Consensus 835 ----------~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~n-------pLYd~------------------Gy~r 879 (928)
+..+...++.+.++||.+||..|||.||..+++|+. .+|.. |.+|
T Consensus 160 k~e~~~~r~~l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~v~d~~~~sCG~sR 239 (447)
T TIGR03183 160 KHESGSLRDRLSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPLVVDTSTPSCGDSR 239 (447)
T ss_pred hhccccccccccccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCceeeCCCCCCCCCCC
Confidence 112222457889999999999999999999998774 56766 6789
Q ss_pred cCcccCCCCCC
Q psy3753 880 IGCEPCTRPTE 890 (928)
Q Consensus 880 iGC~~Ct~~~~ 890 (928)
.|||.||.-.+
T Consensus 240 fGCw~Ct~v~~ 250 (447)
T TIGR03183 240 FGCWVCTMVSE 250 (447)
T ss_pred CCeeeCcCccc
Confidence 99999997754
No 52
>PRK06850 hypothetical protein; Provisional
Probab=99.95 E-value=2.5e-28 Score=278.79 Aligned_cols=195 Identities=16% Similarity=0.311 Sum_probs=150.3
Q ss_pred hhhHHHHHHHHHHHHHhc-CCeEEEEcChHHHHHHHHHHHhcC---------CCceEEEEcCCCChHHHHHHHHHHH---
Q psy3753 693 NSFVKTVLDALNNIVTDY-KPAVFASSLAAEDMVLTDLILRNN---------FDINIFTLNTGRLHSETLNMLNKIY--- 759 (928)
Q Consensus 693 ~~~~~~a~~~I~~~~~~~-~~~~vs~SGGKDS~vll~L~~~~~---------~~i~vvf~DTg~efpeT~~~i~~~~--- 759 (928)
...++.+++.|+..+... .+++|+|||||||+|+|+|+.++. +.+.|+|.|||.|+|+|++|++++.
T Consensus 16 ~~~~~~~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i 95 (507)
T PRK06850 16 GEPIEELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERI 95 (507)
T ss_pred hHHHHHHHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHH
Confidence 566777777777777653 378999999999999999998852 2578999999999999999998764
Q ss_pred ----HHcCCeEE--EEecCchh-hhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc------CCcEEEeeeccccc
Q psy3753 760 ----LTYKYKIK--VYYPLNSE-VNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI------GNKSWITGQRRTQS 826 (928)
Q Consensus 760 ----~~~g~~i~--~~~p~~~~-~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~------~~~~~i~G~R~~ES 826 (928)
+.+|++|. ++.|.... +|.-+-.. +++.+....||||..+|+.|+.++++ +..++++|+|++||
T Consensus 96 ~~~a~~~glpi~~~~v~P~~~~sFwv~liGr---G~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES 172 (507)
T PRK06850 96 NEAAKKQGLPITPHKLTPKINDTFWVNLIGK---GYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAES 172 (507)
T ss_pred HHHHHHcCCceEEEeeCCCcchhHHHHHhcC---CCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeecccc
Confidence 35677664 56676433 44323233 34444456899999999999999985 34689999999999
Q ss_pred ccccCCc--------ceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCC-------Chhhhc----------------
Q psy3753 827 ITRSNLV--------LKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPY-------NTLYDN---------------- 875 (928)
Q Consensus 827 ~~R~~~~--------~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~-------npLYd~---------------- 875 (928)
.+|++.. .+..+...++.+.++||.+|+..|||.||..+++|+ +.+|..
T Consensus 173 ~~RA~~m~~~~~~~~rl~~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~~~~~L~~lY~~a~~~~eCp~v~d~~~~ 252 (507)
T PRK06850 173 AARAQVMAKHEIEGSRLSRHTTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGGSNRDLFTLYRGASADGECPLVVDTSTP 252 (507)
T ss_pred HHHHhhhhhhcccCcceeeccCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhccCCCCCCeeeCCCCC
Confidence 9999762 222222245778999999999999999999998887 567876
Q ss_pred --CCCccCcccCCCCCC
Q psy3753 876 --GYLSIGCEPCTRPTE 890 (928)
Q Consensus 876 --Gy~riGC~~Ct~~~~ 890 (928)
|-+|.|||.||.-.+
T Consensus 253 sCG~sRfGCwvCt~v~~ 269 (507)
T PRK06850 253 SCGNSRFGCWVCTVVTK 269 (507)
T ss_pred CCCCCCCCccccccccc
Confidence 447999999997654
No 53
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-26 Score=265.98 Aligned_cols=363 Identities=14% Similarity=0.172 Sum_probs=254.1
Q ss_pred ccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCC
Q psy3753 324 QNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSE 403 (928)
Q Consensus 324 ~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~ 403 (928)
.|++.|..++.||+||++|+ |.+|++||+.|+++|++||+|.+++|+||||||+||..+++++++++|.+.|+.+
T Consensus 47 ~G~y~q~~~~~~MlRvriPg-----G~ls~~q~r~l~~iA~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l~~vgl~t 121 (510)
T COG0155 47 DGLYLQEPDHAFMLRVRIPG-----GILSPKQLRALADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAELASVGLHT 121 (510)
T ss_pred cceeecccccceeEEEecCC-----CccCHHHHHHHHHHHHHhCCCeEEEeecccceecccccccHHHHHHHHHHcCCcc
Confidence 47888877899999999865 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc--cccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEee-CC
Q psy3753 404 SNIN--LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNK-NG 478 (928)
Q Consensus 404 ~~~~--~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~-~~ 478 (928)
.+++ ..||++++|-++.-...++|...++..+...+. +.+.++|+||||.|+||+.+|+.++++||+|++... ++
T Consensus 122 i~~~gd~~Rnv~~~P~ag~~~~ei~D~r~~~~~~~~~l~~~~~~~~LPRKFkiav~g~~~~~v~~~~~Di~~~a~~~~~~ 201 (510)
T COG0155 122 IATAGDVARNVTGDPLAGLDADEIADPRPLAEILRIWLDGEKGFAYLPRKFKIAVDGGPDNDVDVLINDIGFVAIKENDG 201 (510)
T ss_pred hhhccccccceecCcccccchhhcccchhHHHHHHHHhcCccchhcCCcceEEEEecCcccchhhhccceeEEEecccCC
Confidence 7765 488999889888888889999977777766665 457789999999999999999999999999999875 56
Q ss_pred CcEEEEEEcCCCCCC-CcccccccCCCCcccHHHHHHHHHHHHHHhccccccccc--ccceeehhhhhhhhcccchhhhc
Q psy3753 479 NEYFQILIGGSQGNK-LNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCKIIK--NDTIVNDNWKMLYENDFIEENVK 555 (928)
Q Consensus 479 ~~g~~i~vGG~~~~~-~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k--~~~i~r~g~~~~~e~~~~~~~~~ 555 (928)
..||+++|||+.|.. |..+..+..+++++++.+++++++..|++++...-|..- ...+++.|-..|. .++.+
T Consensus 202 ~~Gf~v~VGGglg~~~~~~~~~~~~~v~~~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~E~f~-----~~ve~ 276 (510)
T COG0155 202 LLGFNVLVGGGLGRTHPKTAPRLAEFVPPEDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGVEKFR-----REVEP 276 (510)
T ss_pred ccceEEEEccccccCCcchhhHHhhccCHHHHHHHHHHHHHHHHhcchhhhhhhhhHHHHHHHhChHHHH-----HHHHH
Confidence 789999999999976 889999999999999999999999999998655333200 2333333322222 11111
Q ss_pred cccccccc---cccchHHHhhhcCCCCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhc
Q psy3753 556 LLEDHVIV---PFKFLKKYLKFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKF 632 (928)
Q Consensus 556 ~~~~~~~~---p~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~ 632 (928)
.. +-++- |+.+|. +...+|+.=..+ . ...-=+.+.+....|...+-++..+++ +
T Consensus 277 ~~-g~~~~~~~~~~~~~--------~~d~~Gw~~~~~-g------------~~~~g~~v~~Grl~~~~~~~l~~~~~~-~ 333 (510)
T COG0155 277 RL-GKPFEPARPREFTG--------NGDHIGWVPQKD-G------------LWHLGLAVPNGRLKAEGLIPLATEAEE-I 333 (510)
T ss_pred hh-CcccCccccccccC--------CCCceeEEEcCC-C------------cEEEEEecceeeecCccchHHHHHHHH-H
Confidence 11 01111 222221 123333322221 0 011123444555566667778888887 5
Q ss_pred CCceeEeec---cccchh----hH----HHHHHcCCcceeecCCCChHHHhccCCcCccccccccccC-CchhhhHHHHH
Q psy3753 633 NYTGELRAI---GDVLQD----QL----FYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQTSADEK-IPLNSFVKTVL 700 (928)
Q Consensus 633 ~~~g~~~a~---~~~~~d----~~----~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~yqps~~~~-~~l~~~~~~a~ 700 (928)
+ .|+||-+ +=+|+| +. ..+...||.+ +..++-.-+.++..++ ....+ ..-+.......
T Consensus 334 ~-~~eiRlT~~QnLii~~v~~~~~~~i~~~l~~~Gl~t----~~~~l~~~~~AC~G~p-----~C~lA~aet~~~a~~i~ 403 (510)
T COG0155 334 G-FGEIRLTPNQNLIIPNVPEAELEAILRILAALGLVT----APSSLRRNSIACVGLP-----TCALALAETERDAPRII 403 (510)
T ss_pred h-hccEEeccCcceEecCCCHHHHHHHHHHHHHcCCCC----CCcchhhhcccCCCCC-----chhhhHhhHHHHHHHHH
Confidence 8 8999988 334443 22 2667788886 1222222233333331 11111 12344455556
Q ss_pred HHHHHHHHhcC-CeEEEEcChHHHHHHHHH
Q psy3753 701 DALNNIVTDYK-PAVFASSLAAEDMVLTDL 729 (928)
Q Consensus 701 ~~I~~~~~~~~-~~~vs~SGGKDS~vll~L 729 (928)
+.++.....++ ++.+-.||=--|..--++
T Consensus 404 ~~l~~~~~~~~~~i~i~isGCpn~Ca~~~~ 433 (510)
T COG0155 404 ARLEDLLDKHGLPITLHISGCPNGCGRPHL 433 (510)
T ss_pred HHHHhhhcccCCceeEEeccCcchhcCccc
Confidence 66666666665 677888886666664433
No 54
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.92 E-value=8.1e-25 Score=251.86 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=192.1
Q ss_pred ecC-eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccce
Q psy3753 48 QRY-AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNI 126 (928)
Q Consensus 48 q~~-~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni 126 (928)
|+| +|.++.|+|||.++|++|++||++|++||...+++|.-|.|-|.|+++++++++++.|... +..+-|-.+|.|
T Consensus 548 qkdgTysvvPrm~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrtv 624 (793)
T COG1251 548 QKDGTYSVVPRMPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRTV 624 (793)
T ss_pred ccCCeEEEeccccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhhH
Confidence 555 8999999999999999999999999999999999999999999999999999999988544 444668899999
Q ss_pred EeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEccc
Q psy3753 127 TSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGG 206 (928)
Q Consensus 127 ~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~ 206 (928)
.+||++..|.....|+..+...|++.+.. ..+|+|+|++|||||++|+.+.+.|+|++++.. ||++|+||.
T Consensus 625 K~Cvg~~~Cr~g~qds~~Lgi~le~~~~g----l~~P~k~k~~vSgCpr~CaEa~~KDvGii~t~~-----G~~l~vgG~ 695 (793)
T COG1251 625 KTCVGSTFCRFGTQDSVGLGIRLEKRYEG----LRTPHKVKMAVSGCPRNCAEAGIKDVGIIGTEK-----GWNLYVGGN 695 (793)
T ss_pred hhCCCcchhhhCccchhhHhHHHHHHhcc----CCCCcceeEeeccCCcccccccCcceEEEeccc-----CceEEeccc
Confidence 99999999999999999999999988754 568999999999999999999999999999988 999999999
Q ss_pred CCCCCcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHH
Q psy3753 207 MGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNE 269 (928)
Q Consensus 207 ~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~ 269 (928)
.|..|+.+..+....++++++.++.+++.+|+++++. .+|+..|++++|++.|++++..
T Consensus 696 ~g~~~r~a~~~~~~~~e~e~l~~i~~~~~~yr~~~~~----leR~~~wi~~~Gl~~~k~~v~~ 754 (793)
T COG1251 696 GGMKPRHADLLAKVLTEEEVLEYIDAFLQYYRETADY----LERTAPWLDRLGLEHIKEVVLD 754 (793)
T ss_pred cCcchhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhcchHHHHHHhhc
Confidence 9999999999999999999999999999999999976 7899999999999999997653
No 55
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.91 E-value=1.1e-24 Score=217.80 Aligned_cols=138 Identities=28% Similarity=0.577 Sum_probs=121.0
Q ss_pred cccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEeeCCCc-EEEE
Q psy3753 408 LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNE-YFQI 484 (928)
Q Consensus 408 ~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~-g~~i 484 (928)
.+||+++|||+++|+.+++||.+++.+|.+++. ...+.+|+||||+||||||+|++++++||||+|+..+... ||+|
T Consensus 4 ~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~~g~~v 83 (157)
T PF01077_consen 4 TVRNVTACPGSGFCPLALIDTKPLARELEDYLEERFEDPNLPRKFKIAISGCPNSCARPQINDIGFIGVKKPNGEEGFDV 83 (157)
T ss_dssp SBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCSCSSS-BEEEEESSTTSTTSGGGSSEEEEEEEESTCEEEEEE
T ss_pred CCcccccCCChhhCchHHhCHHHHhhHhhhcccccccccccccccccceeecccccccccccccccceeeeccccceeee
Confidence 599999999999999999999999999997766 3445566699999999999999999999999999876554 9999
Q ss_pred EEcCCCCCCCccccccc--CCCCcccHHHHHHHHHHHHH--Hhcccccccccccceeehhhhhhhhc
Q psy3753 485 LIGGSQGNKLNFGKIIG--PSFSADQVPDIINRILKVYL--RRCYLMCKIIKNDTIVNDNWKMLYEN 547 (928)
Q Consensus 485 ~vGG~~~~~~~~g~~~~--~~v~~~e~~~~i~~l~~~y~--e~~~~~eR~~k~~~i~r~g~~~~~e~ 547 (928)
++||+.+..+..+..+. .+++.+++++++++++++|+ ++++..||+ ++.++|.|+..|.+.
T Consensus 84 ~vGG~~g~~~~~~~~~~~~~~~~~ee~~~~i~~il~~y~~~~~~~~~er~--~~~i~r~G~e~~~~~ 148 (157)
T PF01077_consen 84 YVGGGLGRHPRLGRELALAGFVPEEEVLEVIEAILEYYRGNREARKKERF--KDFIERLGFEKFREE 148 (157)
T ss_dssp EES-BESTSTBEBEEEEEEEEEEGGGHHHHHHHHHHHHHS-HSSGTT-SH--HHHHHHHHHHHHHHH
T ss_pred eecccccCCCCccceeeccccccHHHHHHHHHHHHHHHHHhccCCCCCCH--HHHHHHHCHHHHHHH
Confidence 99999999999999988 57889999999999999999 999999999 999999999887754
No 56
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=205.74 Aligned_cols=205 Identities=19% Similarity=0.302 Sum_probs=136.3
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc----CC-CceEEEEcCCCChHHHHHHHHHHHHHcCCeEE-
Q psy3753 694 SFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN----NF-DINIFTLNTGRLHSETLNMLNKIYLTYKYKIK- 767 (928)
Q Consensus 694 ~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~----~~-~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~- 767 (928)
...++++++|+++++.|++++|||||||||.|||||+.++ ++ +|.|+|+|-+.+|..|.+||+++.+.|...++
T Consensus 11 nV~eA~~eRl~~if~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~~~~~dv~~~ 90 (407)
T COG3969 11 NVLEAAIERLEWIFNTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMRESYHDVIET 90 (407)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHHhcccCcccc
Confidence 3468999999999999999999999999999999999874 44 79999999999999999999999997543222
Q ss_pred ---EEecCchh--------hhHHHHHhCCCCC-----ccc--hhhhhhhh-hhcccc------hHHHhhc---CCcEEEe
Q psy3753 768 ---VYYPLNSE--------VNNYIFKNGINAF-----YDS--VQMRKKCC-YIRKVK------PLKKALI---GNKSWIT 819 (928)
Q Consensus 768 ---~~~p~~~~--------~~~~~~~~G~~~~-----~~~--~~~~~~Cc-~~~K~~------Pl~~~l~---~~~~~i~ 819 (928)
+.-|.... .| ..++.|.+.. ++. ..+....+ ...++. -+...+. ...++++
T Consensus 91 ~yWvcLPl~t~na~S~~qp~W-~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~Lv 169 (407)
T COG3969 91 FYWVCLPLTTQNALSQYQPEW-ICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLV 169 (407)
T ss_pred ceEEEeehhcccchhhcCcee-ecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhccCCceEEEE
Confidence 33332211 11 1222221100 000 00011111 111111 1222221 1268999
Q ss_pred eecccccccccCC-------------cceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCC
Q psy3753 820 GQRRTQSITRSNL-------------VLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCT 886 (928)
Q Consensus 820 G~R~~ES~~R~~~-------------~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct 886 (928)
|+|++||.+|... ++...+...+....++||+||+.+|||.+..+++.+||+|||+.|. -|--+.-
T Consensus 170 GiRadESlNRf~ai~~~~k~~~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN~LYDlmYq-AGvp~~~ 248 (407)
T COG3969 170 GIRADESLNRFNAIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLYDLMYQ-AGVPLRQ 248 (407)
T ss_pred eecchhhHHHHHHHHHhhhcccCCCCCceeeecCCCceEEEEecccchHHHHHHHHHhcCCcccHHHHHHHH-cCCChhh
Confidence 9999999999632 1222222234588999999999999999999999999999999443 3432221
Q ss_pred --CCCCCCCCcccccc
Q psy3753 887 --RPTEKGKDIRSGRW 900 (928)
Q Consensus 887 --~~~~~~~~~r~gRW 900 (928)
...+-|.++|.|-|
T Consensus 249 MRVc~Pfgd~qr~gL~ 264 (407)
T COG3969 249 MRVCEPFGDEQRKGLW 264 (407)
T ss_pred ccccCCCChhhhcccc
Confidence 11345778888877
No 57
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.86 E-value=7.1e-22 Score=227.76 Aligned_cols=198 Identities=21% Similarity=0.453 Sum_probs=178.3
Q ss_pred CCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCc-c-cc
Q psy3753 332 NGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNI-N-LL 409 (928)
Q Consensus 332 ~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~-~-~~ 409 (928)
+|.|++.-+ +|+|++++++|++|++++++||...+.+|..|.|-|.|++.+++++++.+|... ++.+ + .+
T Consensus 550 dgTysvvPr-----m~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~l 621 (793)
T COG1251 550 DGTYSVVPR-----MPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKAL 621 (793)
T ss_pred CCeEEEecc-----ccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhh
Confidence 568887644 467999999999999999999999999999999999999999999999988644 2222 2 49
Q ss_pred cceeccCCcccccccccchHHHHHHHHHHhc-ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEeeCCCcEEEEEEcC
Q psy3753 410 TDIICCPGGDFCSLANTKSLPIAKNIMKYFS-KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGG 488 (928)
Q Consensus 410 r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~-~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i~vGG 488 (928)
|++-+|||...|.++..||..|...|++.+. ...|+ |+|+.+||||++|+.+.+.|+|++++. .||++|+||
T Consensus 622 rtvK~Cvg~~~Cr~g~qds~~Lgi~le~~~~gl~~P~---k~k~~vSgCpr~CaEa~~KDvGii~t~----~G~~l~vgG 694 (793)
T COG1251 622 RTVKTCVGSTFCRFGTQDSVGLGIRLEKRYEGLRTPH---KVKMAVSGCPRNCAEAGIKDVGIIGTE----KGWNLYVGG 694 (793)
T ss_pred hhHhhCCCcchhhhCccchhhHhHHHHHHhccCCCCc---ceeEeeccCCcccccccCcceEEEecc----cCceEEecc
Confidence 9999999999999999999999999999987 55666 999999999999999999999999976 689999999
Q ss_pred CCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhhh
Q psy3753 489 SQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLYE 546 (928)
Q Consensus 489 ~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~e 546 (928)
..|..++.+..+....+++++++++.+++.+|++.+...+|+ +..|.+.|+..+-+
T Consensus 695 ~~g~~~r~a~~~~~~~~e~e~l~~i~~~~~~yr~~~~~leR~--~~wi~~~Gl~~~k~ 750 (793)
T COG1251 695 NGGMKPRHADLLAKVLTEEEVLEYIDAFLQYYRETADYLERT--APWLDRLGLEHIKE 750 (793)
T ss_pred ccCcchhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhcchHHHHH
Confidence 999999999999888899999999999999999999999999 88889988766655
No 58
>KOG0560|consensus
Probab=99.77 E-value=5.4e-19 Score=192.09 Aligned_cols=248 Identities=15% Similarity=0.131 Sum_probs=193.7
Q ss_pred CCcCCccCHHHHHHHHHHHHHHHHHHhcCCCCHHH-----HhhccccceeeeecC-eeEEEEEcCCCccCHHHHHHHHHH
Q psy3753 1 MYHYDKYDHQLVKERVIQYRDQVRRRLSNELSEEE-----FIVLRLQNGLYLQRY-AYMLRIAIPYGMLSSKQMRMLSYI 74 (928)
Q Consensus 1 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~G~~~q~~-~~~vRir~p~G~lt~~ql~~la~i 74 (928)
||++|+|+-+ .|++.+++++.+++.+.. +...+--.||..|.+ .+.+.+.++.|++-..+++..+..
T Consensus 374 kylid~lGVe-------~Fr~~VEe~~g~KfE~~r~~~~~~we~~dyfGwh~q~~gl~f~glhVe~GRve~l~~ktglRe 446 (638)
T KOG0560|consen 374 KYLIDELGVE-------GFRTKVEEYMGKKFEPGRSEPNKQWERRDYFGWHKQEEGLSFVGLHVENGRVEALDMKTGLRE 446 (638)
T ss_pred hhhHHhhhhH-------HHHHHHHHHhcccCCcCcCCcchhhccccccccccCCCCceEEEEEccccccccchhhhHHHH
Confidence 6889998854 555556666666664332 223344489999976 788999999999999999999999
Q ss_pred HHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhc
Q psy3753 75 AKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWST 154 (928)
Q Consensus 75 A~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~ 154 (928)
+.+|+.+.++||..|||.|.+|..+....+.+.|...+|......| -.-..++|++...|+.++.++...+-.|.....
T Consensus 447 v~e~~~~e~rlT~nQniii~nv~te~~~~i~~~la~~~l~npefs~-L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve 525 (638)
T KOG0560|consen 447 VAEYGSGELRLTVNQNIIIPNVETEKTEAILQELALYKLDNPEFSG-LRLSSVACVGLPTCGLAIAESERRLPKIITEVE 525 (638)
T ss_pred HHHhhcceeeecccccEEecccchhhhHHHHHHHHHhccCCcchhh-hhhhhhcccCCCcchhHHHHHhhchhHHHHHHH
Confidence 9999999999999999999999999999999999999998766555 556678999999999999998766655544332
Q ss_pred cCCccccCCCc-eEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHH
Q psy3753 155 FHPEFAYLPRK-FKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAI 233 (928)
Q Consensus 155 ~~~~~~~LP~K-fki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai 233 (928)
..-+...||+- +.+.++||||.|+++..+||||++... .-|++++||+.-. -++.+.....+..+++.++++-+
T Consensus 526 ~~~e~vgl~~dsIvmr~TGCPNgCsrp~vaeig~vGkap----nty~~~lgG~p~~-~~l~k~~~~~vkd~ei~~i~kpl 600 (638)
T KOG0560|consen 526 RMFEEVGLPRDSIVMRMTGCPNGCSRPWVAEIGLVGKAP----NTYNLMLGGGPVG-QRLNKLYGRIVKDSEIGEIYKPL 600 (638)
T ss_pred HHHHHhCCCCCceEEEeccCCCCCCcchhhheeecccCC----cceeeecCCcchH-HHHHHHHhccccHHHHHHHHhhh
Confidence 11122568877 999999999999999999999999443 2799999998421 24555666788999999999999
Q ss_pred HHHHHHhcCCCCcCCCchhHHHHhhCHHHHHH
Q psy3753 234 LRIYNQYGRRDNIYKSRIKILLKSIGIENFQF 265 (928)
Q Consensus 234 ~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~ 265 (928)
+..|.-...- +|-|.++.-|+|.++-.+
T Consensus 601 ~k~~~Lere~----~E~fgd~~~rvg~ek~~e 628 (638)
T KOG0560|consen 601 FKRYALEREV----GEHFGDEFIRVGIEKEEE 628 (638)
T ss_pred hhhhhhhHHH----HHHHHHHHHhhcceeccc
Confidence 9888754432 577777777777654433
No 59
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.52 E-value=1.3e-14 Score=124.03 Aligned_cols=66 Identities=39% Similarity=0.532 Sum_probs=61.0
Q ss_pred eeecC---eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHc
Q psy3753 46 YLQRY---AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASV 111 (928)
Q Consensus 46 ~~q~~---~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~ 111 (928)
|+|++ .||+|+++|+|++|++|++.|+++|++||.|.++||+||||+|+||+.+++++++++|.++
T Consensus 1 ~~qk~~~g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~~ 69 (69)
T PF03460_consen 1 HPQKDGDGFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKEA 69 (69)
T ss_dssp EECTTSTTEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHHT
T ss_pred CCCCcCCeEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHcC
Confidence 56776 3799999999999999999999999999999999999999999999999999999999864
No 60
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.42 E-value=2e-13 Score=116.66 Aligned_cols=68 Identities=31% Similarity=0.554 Sum_probs=62.1
Q ss_pred cceee-CCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHC
Q psy3753 327 KKHKI-NGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQY 399 (928)
Q Consensus 327 ~~qk~-~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~ 399 (928)
|+||+ +|+|++++++++ |++++++|+.|++++++||.|.+|+|++|||+|+||+.+++++++++|+++
T Consensus 1 ~~qk~~~g~~~v~~~~~~-----G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~~ 69 (69)
T PF03460_consen 1 HPQKDGDGFYMVRIRIPG-----GRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKEA 69 (69)
T ss_dssp EECTTSTTEEEEEEB-GG-----GEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHHT
T ss_pred CCCCcCCeEEEEEEeCCC-----EEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHcC
Confidence 46777 578999999866 999999999999999999999999999999999999999999999999863
No 61
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.38 E-value=2e-12 Score=132.79 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=109.9
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCC----CceEEEEcCCCChH--HHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNF----DINIFTLNTGRLHS--ETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGI 785 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~----~i~vvf~DTg~efp--eT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~ 785 (928)
+++|++||||||+|+++++.+.+. ++.++|+|+|..+. ++.++++++++.+|++++++..... .+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~- 71 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALA--------PK- 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccc--------cC-
Confidence 478999999999999999988754 79999999998774 8999999999999999988722110 11
Q ss_pred CCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCC-----------cceeecCCCCCeEEEEeCcC
Q psy3753 786 NAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNL-----------VLKEKDIIHNGIIKFNPLYN 852 (928)
Q Consensus 786 ~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~-----------~~~~~d~~~~~~~~~~PI~d 852 (928)
... ....+|...+..-+.++.+ +.+.+++|.+.+|...+... ..............++||.+
T Consensus 72 --~~~---~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~ 146 (185)
T cd01992 72 --PGG---NLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLG 146 (185)
T ss_pred --CCC---CHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcccCCCCCeEECCCCC
Confidence 001 1234577667666776664 57889999999997554211 11111111346678999999
Q ss_pred CCHHHHHHHHHHCCCCCChhh
Q psy3753 853 WLEKDIWNYINTYNVPYNTLY 873 (928)
Q Consensus 853 Wt~~DVw~Yi~~~~lp~npLY 873 (928)
|+..|||.|.+.++||+...+
T Consensus 147 ~~k~eI~~~~~~~~l~~~~~~ 167 (185)
T cd01992 147 ITRAEIEAYLRENGLPWWEDP 167 (185)
T ss_pred CCHHHHHHHHHHcCCCeEECC
Confidence 999999999999999987654
No 62
>KOG2644|consensus
Probab=99.37 E-value=5.7e-13 Score=139.43 Aligned_cols=154 Identities=21% Similarity=0.386 Sum_probs=121.9
Q ss_pred eEEEEcChHHHHHHHHHHHhcC------------CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHH
Q psy3753 713 AVFASSLAAEDMVLTDLILRNN------------FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYI 780 (928)
Q Consensus 713 ~~vs~SGGKDS~vll~L~~~~~------------~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~ 780 (928)
++.||+||||.+|+++|+.+.. ..++.+|+|....||+..+|+.....+|.+.+..+.-.. ...
T Consensus 85 ~a~SFnggkdc~vll~ll~~~l~~~~~~~~~~p~~~i~~~~~~~~~~fp~~~~fv~~~~~~y~~~l~~~~~~~-~lk--- 160 (282)
T KOG2644|consen 85 MALSFNGGKDCTVLLLLLMRYLRDEYAEKLDQPSTAIPAVYIDVEDSFPELEDFVSVCVFKYRPQLSRLSGAG-RLK--- 160 (282)
T ss_pred HHHhhCCCCChHHHHHHHHHHhcchhhhhccCCCccccceeecCCCCcccccchHHHHHHhhccchhhccCcc-hHH---
Confidence 6789999999999999998731 257899999999999999999999999976655331110 000
Q ss_pred HHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHH
Q psy3753 781 FKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWN 860 (928)
Q Consensus 781 ~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~ 860 (928)
. --+...|+.| ....+++|+|+.+...=+.++....|..|++.++..|+++|+..|||.
T Consensus 161 --~-------------~~~~~~~~~~------~~k~i~vg~r~~dp~g~~~~~~~~td~~wp~~~r~~pll~ws~t~vw~ 219 (282)
T KOG2644|consen 161 --K-------------ALSLFKKVDP------ESKAILVGIRNTDPVGEALAPFERTDSLWPQFMRLLPLLEWSYTDVWD 219 (282)
T ss_pred --H-------------HHHHhhhhhh------hhhhHhhhhhhCCCccceecceeeccCCchhhhhhcccccchHHHHHH
Confidence 0 0122222222 345678899999998855666666677789999999999999999999
Q ss_pred HHHHCCCCCChhhhcCCCccCcccCCCCCCC
Q psy3753 861 YINTYNVPYNTLYDNGYLSIGCEPCTRPTEK 891 (928)
Q Consensus 861 Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~ 891 (928)
|++..++|||.+|++||+|+|-...|.|++.
T Consensus 220 ~l~~~~~p~c~ly~qg~TslG~~~~t~pnp~ 250 (282)
T KOG2644|consen 220 LLREGNLPYCGLYDQGYTSLGGRSNTSPNPS 250 (282)
T ss_pred HHhcCCCceeeeecccccccccccCCCCChh
Confidence 9999999999999999999999999999884
No 63
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.26 E-value=2.2e-11 Score=124.95 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=105.3
Q ss_pred CeEEEEcChHHHHHHHHHHHhcC------CCceEEEEcCCCCh--HHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHh
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNN------FDINIFTLNTGRLH--SETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKN 783 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~------~~i~vvf~DTg~ef--peT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~ 783 (928)
+++|++||||||+++++++.+.. .++.++++|+|... ++..++++++++.+|+++.++...... ......
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~ 78 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEY--TDDIEV 78 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhc--chhhhh
Confidence 47899999999999999998863 36788999999864 788999999999999998887654211 000011
Q ss_pred CCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCC-----------ccee-ecCCCCCeEEEEe
Q psy3753 784 GINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNL-----------VLKE-KDIIHNGIIKFNP 849 (928)
Q Consensus 784 G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~-----------~~~~-~d~~~~~~~~~~P 849 (928)
..+. . ......|...+...+.+..+ +..++++|...+|......+ .... ......+...++|
T Consensus 79 ~~~~---~-~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l~~~~~g~~~~~~~~~~~~~~~~~~~~iirP 154 (185)
T cd01993 79 KKRG---G-KSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILRLMRPGPILYLDEGDVTRIRP 154 (185)
T ss_pred hccC---C-CCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHHhcCHHHHcCCCCccccCCCCceEEee
Confidence 1000 0 01122355555555666554 56899999999986542211 1111 0111234667999
Q ss_pred CcCCCHHHHHHHHHHCCCCCChh
Q psy3753 850 LYNWLEKDIWNYINTYNVPYNTL 872 (928)
Q Consensus 850 I~dWt~~DVw~Yi~~~~lp~npL 872 (928)
|.+|+..||+.|.+.++||+-+.
T Consensus 155 L~~~~k~eI~~~~~~~~l~~~~d 177 (185)
T cd01993 155 LVYVREKEIVLYAELNGLPFVEE 177 (185)
T ss_pred cccCCHHHHHHHHHHcCCCcccC
Confidence 99999999999999999987653
No 64
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.24 E-value=4.6e-11 Score=123.23 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=106.1
Q ss_pred CeEEEEcChHHHHHHHHHHHhc----CCCceEEEEcCCCCh--HHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRN----NFDINIFTLNTGRLH--SETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGI 785 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~----~~~i~vvf~DTg~ef--peT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~ 785 (928)
+++|++||||||+|+++++.+. +.++.++++|+|... ++..+.++++.+.+|+++.++.-...... ...+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~~ 77 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALA---KGKKK 77 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhc---cccCC
Confidence 4789999999999999999884 557899999999864 66788999999999999887754322110 01110
Q ss_pred CCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCC-----------cceeec-CCCCCeEEEEeCc
Q psy3753 786 NAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNL-----------VLKEKD-IIHNGIIKFNPLY 851 (928)
Q Consensus 786 ~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~-----------~~~~~d-~~~~~~~~~~PI~ 851 (928)
. ....|...+..-+.+..+ +.+.+++|...++...+..+ ..+... ....+...++||.
T Consensus 78 -----~---~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~ 149 (189)
T TIGR02432 78 -----N---LEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLL 149 (189)
T ss_pred -----C---HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHHcCCCcccccCCccccccCCCCEEECCCC
Confidence 0 122355555555665554 67889999999987543111 111110 1011566899999
Q ss_pred CCCHHHHHHHHHHCCCCCChhh
Q psy3753 852 NWLEKDIWNYINTYNVPYNTLY 873 (928)
Q Consensus 852 dWt~~DVw~Yi~~~~lp~npLY 873 (928)
+|+++||+.|.+.+++|+...+
T Consensus 150 ~~~k~ei~~~~~~~~lp~~~~~ 171 (189)
T TIGR02432 150 GISKSEIEEYLKENGLPWFEDE 171 (189)
T ss_pred CCCHHHHHHHHHHcCCCeeeCC
Confidence 9999999999999999987665
No 65
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=99.06 E-value=5.6e-10 Score=120.98 Aligned_cols=122 Identities=16% Similarity=0.346 Sum_probs=98.4
Q ss_pred cEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCC
Q psy3753 370 ELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGK 449 (928)
Q Consensus 370 ~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k 449 (928)
+||++=.+ -+.+++...++.|+.+||...+ .++++||| |..+.+|+..++.+++++|. ..+. +
T Consensus 236 TiRVSLt~------~P~~EV~va~~IL~slglr~~g----~~IisCPg---CgR~~~D~~~la~~vee~~~-~~~~---P 298 (360)
T PRK00366 236 TIRVSLTA------DPVEEVKVGQEILQSLGLRSRG----PEVISCPT---CGRTEFDVIQELAEVEQRLE-HIKM---P 298 (360)
T ss_pred eEEEeCCC------CCHHHHHHHHHHHHHcCCccCC----CeEEECCC---CCCCcccHHHHHHHHHHHhc-CCCC---C
Confidence 67775443 3478888889999999997554 57999998 99999999999999999996 2222 4
Q ss_pred eEEEEecCC-CCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHH
Q psy3753 450 ISLNISGCI-NSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLR 522 (928)
Q Consensus 450 ~ki~iSGCp-n~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e 522 (928)
+||+|+||+ |+|+.+..+|||+.|.. .++.||.||+.- ..++.+++.+.+.+.++-|.+
T Consensus 299 lkIAVmGC~VNgpGEa~~aDIGIaG~~----~~~~vf~~Gk~v----------~kv~~~~~~~~l~~~i~~~~~ 358 (360)
T PRK00366 299 LKVAVMGCVVNGPGEAKEADIGIAGGN----PKGPVFVDGEKI----------KTLPEENIVEELEAEIEAYAE 358 (360)
T ss_pred cEEEEeCCCCCCCCchhhCcEeEecCC----CceEEEECCEEe----------eeeChHhHHHHHHHHHHHHHh
Confidence 999999995 99999999999999944 579999999842 147888888888777776643
No 66
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.05 E-value=2.3e-09 Score=116.13 Aligned_cols=161 Identities=17% Similarity=0.241 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhc------CCeEEEEcChHHHHHHHHHHHhc------CCCceEEEEcCCCC-hHHHHHHHHHHHHHcC
Q psy3753 697 KTVLDALNNIVTDY------KPAVFASSLAAEDMVLTDLILRN------NFDINIFTLNTGRL-HSETLNMLNKIYLTYK 763 (928)
Q Consensus 697 ~~a~~~I~~~~~~~------~~~~vs~SGGKDS~vll~L~~~~------~~~i~vvf~DTg~e-fpeT~~~i~~~~~~~g 763 (928)
+.....+.+++.+| ++++|++||||||+||||++.+. +.++.++++|.|.. +.+ ++++++++.+|
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lg 87 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLG 87 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhC
Confidence 44555666666665 37999999999999999999763 23577889999853 333 46788999999
Q ss_pred CeEEEEecCchhhhHHHHHhCCCCCccchhhhhhh--hhhcccchHHHhhc--CCcEEEeeecccccccc----------
Q psy3753 764 YKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKC--CYIRKVKPLKKALI--GNKSWITGQRRTQSITR---------- 829 (928)
Q Consensus 764 ~~i~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~C--c~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R---------- 829 (928)
++++++..+.... .... . ... ...| |...+..-+.++.. +.+.+++|...+|....
T Consensus 88 I~~~v~~~~~~~~---~~~~-~---~~~---~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~ 157 (258)
T PRK10696 88 VPYHIEEQDTYSI---VKEK-I---PEG---KTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGK 157 (258)
T ss_pred CCEEEEEecchhh---hhhh-h---ccC---CChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCc
Confidence 9988876432111 1000 0 000 1123 55455555655554 67889999998886531
Q ss_pred -cCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCC
Q psy3753 830 -SNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYN 870 (928)
Q Consensus 830 -~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~n 870 (928)
..+...... ..++...++|+++++.+||+.|.+.+++|+-
T Consensus 158 l~~m~~~~~~-~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~ 198 (258)
T PRK10696 158 LKAMPPKLLS-DDGKHIVIRPLAYVAEKDIIKFAEAKEFPII 198 (258)
T ss_pred ccccCCeeec-CCCceeEEecCccCCHHHHHHHHHHcCCCEe
Confidence 111111111 1234568999999999999999999999974
No 67
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.89 E-value=2e-08 Score=108.39 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=104.7
Q ss_pred HHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHH
Q psy3753 701 DALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYI 780 (928)
Q Consensus 701 ~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~ 780 (928)
+.++..++.+++++|++|||+||+++++++.+.+.++..+++|.+...++-.+.++++++++|++.+++.-+.. ... .
T Consensus 3 ~~l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~-~~~-~ 80 (252)
T TIGR00268 3 ENLRNFLKEFKKVLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDKM-INP-F 80 (252)
T ss_pred HHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHH-HHH-H
Confidence 56778888899999999999999999999999988899999999876677788999999999999887754311 111 1
Q ss_pred HHhCCCCCccchhhhhhhhhhcccc---hHHHhhc--CCcEEEeeecccccc-cccCCcceeecCCCCCeEEEEeCcC--
Q psy3753 781 FKNGINAFYDSVQMRKKCCYIRKVK---PLKKALI--GNKSWITGQRRTQSI-TRSNLVLKEKDIIHNGIIKFNPLYN-- 852 (928)
Q Consensus 781 ~~~G~~~~~~~~~~~~~Cc~~~K~~---Pl~~~l~--~~~~~i~G~R~~ES~-~R~~~~~~~~d~~~~~~~~~~PI~d-- 852 (928)
..+. ... |...|.. -+.+..+ +..++++|.-.+|-. .|........ .+ ..+|+.+
T Consensus 81 ~~n~----------~~~-c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~~----~~--~~~PL~~~~ 143 (252)
T TIGR00268 81 RANV----------EER-CYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVKE----FN--GVSPWAEFG 143 (252)
T ss_pred HhCC----------Ccc-cchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHHH----cC--CCCcchhcC
Confidence 1111 112 3333322 2222222 567899998877743 3322211111 11 2499976
Q ss_pred CCHHHHHHHHHHCCCCCC
Q psy3753 853 WLEKDIWNYINTYNVPYN 870 (928)
Q Consensus 853 Wt~~DVw~Yi~~~~lp~n 870 (928)
|+.+||..|.++.|+|+.
T Consensus 144 l~K~eIr~la~~~gl~~~ 161 (252)
T TIGR00268 144 ITKKEIREIAKSLGISFP 161 (252)
T ss_pred CCHHHHHHHHHHcCCCcc
Confidence 799999999999999854
No 68
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=98.88 E-value=8.6e-09 Score=111.89 Aligned_cols=115 Identities=20% Similarity=0.130 Sum_probs=94.4
Q ss_pred cccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEec
Q psy3753 94 NWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGS 173 (928)
Q Consensus 94 ~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc 173 (928)
.+-+.+.+....+-|+++||...+ ++|++||+ |....+|+..++.++++.+... .+| |||+|+||
T Consensus 242 t~~P~~EV~va~~IL~slglr~~g------~~IisCPg---CgR~~~D~~~la~~vee~~~~~----~~P--lkIAVmGC 306 (360)
T PRK00366 242 TADPVEEVKVGQEILQSLGLRSRG------PEVISCPT---CGRTEFDVIQELAEVEQRLEHI----KMP--LKVAVMGC 306 (360)
T ss_pred CCCCHHHHHHHHHHHHHcCCccCC------CeEEECCC---CCCCcccHHHHHHHHHHHhcCC----CCC--cEEEEeCC
Confidence 334566778888899999997543 89999998 9999999999999999998643 355 99999999
Q ss_pred C-CCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHH
Q psy3753 174 Q-EDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYN 238 (928)
Q Consensus 174 ~-~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~ 238 (928)
+ |+|..+..+|||+.+... +|.||.||..- ..++.+++++.+...++-|.
T Consensus 307 ~VNgpGEa~~aDIGIaG~~~-----~~~vf~~Gk~v----------~kv~~~~~~~~l~~~i~~~~ 357 (360)
T PRK00366 307 VVNGPGEAKEADIGIAGGNP-----KGPVFVDGEKI----------KTLPEENIVEELEAEIEAYA 357 (360)
T ss_pred CCCCCCchhhCcEeEecCCC-----ceEEEECCEEe----------eeeChHhHHHHHHHHHHHHH
Confidence 4 999999999999998554 89999999742 34788899988888776653
No 69
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.85 E-value=3.8e-08 Score=116.24 Aligned_cols=176 Identities=12% Similarity=0.179 Sum_probs=118.9
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCC-ChHHHHHHHHHHHHHcCCeEEE
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGR-LHSETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~-efpeT~~~i~~~~~~~g~~i~~ 768 (928)
..+..++..++.|++.+.. ++++|++|||+||+|+++++.+. +.++.++|+|+|. .-+|+.+..+.+++.+|+++++
T Consensus 197 ~~~~~~~~~~~~l~~~v~~-~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~v 275 (511)
T PRK00074 197 TMENFIEEAIEEIREQVGD-KKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIH 275 (511)
T ss_pred cHHHHHHHHHHHHHHhcCC-CcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 5667778888888887765 79999999999999999999887 7789999999997 3467777777788999999988
Q ss_pred EecCchhhhHHHHH-hCCCCCccchhhhhhhhhhcccchHHHhhc---CCcEEEeeecccccc-cccCCc--cee-e-c-
Q psy3753 769 YYPLNSEVNNYIFK-NGINAFYDSVQMRKKCCYIRKVKPLKKALI---GNKSWITGQRRTQSI-TRSNLV--LKE-K-D- 838 (928)
Q Consensus 769 ~~p~~~~~~~~~~~-~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~---~~~~~i~G~R~~ES~-~R~~~~--~~~-~-d- 838 (928)
+..... +... .|. ..+......||...- .-+.+..+ +.+.+++|.-.++-. .|...+ .+. . +
T Consensus 276 vd~~~~----f~~~l~g~---~~~~~~r~~~~~~~~-~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~~~~~ik~~~~l 347 (511)
T PRK00074 276 VDASDR----FLSALAGV---TDPEEKRKIIGREFI-EVFEEEAKKLGGVKFLAQGTLYPDVIESGGTKKAATIKSHHNV 347 (511)
T ss_pred EccHHH----HHHhccCC---CCcHHhhhhhhHHHH-HHHHHHHHHccCCCEEEECCCcchhhhhcCCCCccccccccCc
Confidence 754311 1111 232 222222233443332 33444442 567889998555542 231110 000 0 0
Q ss_pred --C-CCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 839 --I-IHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 839 --~-~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
- .....-.+.||.+++.+||-.|.+.++||+...+++
T Consensus 348 ~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp~~~~~~~ 387 (511)
T PRK00074 348 GGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEIVYRH 387 (511)
T ss_pred cCcChhHhcccccchhhcCHHHHHHHHHHcCCCHHHhCCC
Confidence 0 001234799999999999999999999998888887
No 70
>PRK00919 GMP synthase subunit B; Validated
Probab=98.83 E-value=5.2e-08 Score=106.94 Aligned_cols=174 Identities=11% Similarity=0.167 Sum_probs=114.5
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEE
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVY 769 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~ 769 (928)
....+++..++.|+..+.. ++++|++|||+||+++++++.++ +.++..+|+|+|.....-.++++++.+.+ ++++++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vv 80 (307)
T PRK00919 3 DPEKFIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKETFSDM-LNLRIV 80 (307)
T ss_pred CHHHHHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEE
Confidence 3567778888888888776 89999999999999999999885 77899999999997666678888877776 777776
Q ss_pred ecCchhhhHHHHH-hCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeeccccccc-ccCC----cceeecCCC
Q psy3753 770 YPLNSEVNNYIFK-NGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSIT-RSNL----VLKEKDIIH 841 (928)
Q Consensus 770 ~p~~~~~~~~~~~-~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~-R~~~----~~~~~d~~~ 841 (928)
..... +... .+ +..+.. .++-|......-+.+..+ +.+.+++|.-.++... |... +...... .
T Consensus 81 d~~e~----fl~~L~~---v~npe~-rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~~iks~~nv~gl~~-~ 151 (307)
T PRK00919 81 DAKDR----FLDALKG---VTDPEE-KRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEGGIKSHHNVGGLPE-G 151 (307)
T ss_pred ECCHH----HHHhccC---CCChHH-hhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccCcccccccccccCh-h
Confidence 43321 1111 12 222221 222233222333333332 5678899987765422 2211 0000000 1
Q ss_pred CCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 842 NGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 842 ~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
...-.+.||.+++.+||..|.+..|||+.-.+.+
T Consensus 152 ~~~~Ii~PL~~l~K~EVr~la~~lGLp~~~~~r~ 185 (307)
T PRK00919 152 MVLKIVEPLRDLYKDEVREVARALGLPEEISERM 185 (307)
T ss_pred hcCCcccCchhCcHHHHHHHHHHcCCChhhhCCC
Confidence 1233699999999999999999999998655544
No 71
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=98.83 E-value=1.5e-08 Score=104.01 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=89.3
Q ss_pred CeEEEEcChHHHHHHHHHHHhc----CCCceEEEEcCCCC--hHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRN----NFDINIFTLNTGRL--HSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGI 785 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~----~~~i~vvf~DTg~e--fpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~ 785 (928)
+++|++||||||++||+++.+. +.++.++++|.|.. ..+-.++++++++.+|+++.+...+.. ....
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~-------~~~~ 73 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED-------RKKG 73 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH-------CCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee-------eccc
Confidence 4789999999999999999885 34789999999975 235568999999999999988765431 0000
Q ss_pred CCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccC-----------CcceeecCCCCCeEEEEeCcC
Q psy3753 786 NAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSN-----------LVLKEKDIIHNGIIKFNPLYN 852 (928)
Q Consensus 786 ~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~-----------~~~~~~d~~~~~~~~~~PI~d 852 (928)
.....||....-.-|.+..+ +.+.+++|.-.+|-..--. +..+.......+...++|++.
T Consensus 74 -------~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~ 146 (182)
T PF01171_consen 74 -------SNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLY 146 (182)
T ss_dssp -------STCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGC
T ss_pred -------CCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHHHhccchhhccccccccccCcccCCcchh
Confidence 01223454444344555554 4578899987776532211 111111000235778999999
Q ss_pred CCHHHHHHHHHHCCCCCChh
Q psy3753 853 WLEKDIWNYINTYNVPYNTL 872 (928)
Q Consensus 853 Wt~~DVw~Yi~~~~lp~npL 872 (928)
.+++|+-.|.+.+++||-..
T Consensus 147 ~~k~ei~~~~~~~~i~~~~D 166 (182)
T PF01171_consen 147 VSKDEIRAYAKENGIPYVED 166 (182)
T ss_dssp S-HHHHHHHHHHTT-SSBS-
T ss_pred CCHHHHHHHHHHCCCcEEEC
Confidence 99999999999999998653
No 72
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.81 E-value=2e-08 Score=104.77 Aligned_cols=142 Identities=14% Similarity=0.054 Sum_probs=98.9
Q ss_pred eEEEEcChHHHHHHHHHHHhcCC-CceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCCCCccc
Q psy3753 713 AVFASSLAAEDMVLTDLILRNNF-DINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDS 791 (928)
Q Consensus 713 ~~vs~SGGKDS~vll~L~~~~~~-~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~~~~~~ 791 (928)
++|++|||+||+++++++.+.+. ++..+++|+|...++..++++++++++|++.+++...... .........
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~~~~~~------ 73 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEFAKNPP------ 73 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHHhcCCC------
Confidence 57999999999999999998754 8999999999878889999999999999998887654211 111111110
Q ss_pred hhhhhhhhhhcccchHHHhhc--CCcEEEeeeccccccc-ccCCcceeecCCCCCeEEEEeCc--CCCHHHHHHHHHHCC
Q psy3753 792 VQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSIT-RSNLVLKEKDIIHNGIIKFNPLY--NWLEKDIWNYINTYN 866 (928)
Q Consensus 792 ~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~-R~~~~~~~~d~~~~~~~~~~PI~--dWt~~DVw~Yi~~~~ 866 (928)
..-..|......-+.+..+ +..++++|...+|... |..... . .....++||. .++.+||..|.++.|
T Consensus 74 --~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~~~~~--~----~~~~iirPL~~~~~~K~ei~~~a~~~g 145 (202)
T cd01990 74 --DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRPGLKA--L----RELGVRSPLAEAGLGKAEIRELARELG 145 (202)
T ss_pred --CccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccChHHHH--H----HHcCCcCchhhcCCCHHHHHHHHHHcC
Confidence 0111244333444444443 5678999988877542 211111 0 1123599999 599999999999999
Q ss_pred CCC
Q psy3753 867 VPY 869 (928)
Q Consensus 867 lp~ 869 (928)
+|+
T Consensus 146 l~~ 148 (202)
T cd01990 146 LPT 148 (202)
T ss_pred CCC
Confidence 987
No 73
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.80 E-value=6e-08 Score=98.20 Aligned_cols=135 Identities=14% Similarity=0.129 Sum_probs=89.8
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCCCCccc
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDS 791 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~~~~~~ 791 (928)
++++++||||||+++++++.+.+.++..+++|.+....+-.++++++.+.+|. ...+ +...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~----------------- 61 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLGP-STYV-PARN----------------- 61 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcCCcEEEEEEECCCCChhHHHHHHHHHHHHCC-CEEE-eCcC-----------------
Confidence 47899999999999999999998899999999987644444889999999982 1111 1000
Q ss_pred hhhhhhhhhhcccchHHHhh--cCCcEEEeeecccccccccC-Cc-ce---ee---cCCCCCeEEEEeCcCCCHHHHHHH
Q psy3753 792 VQMRKKCCYIRKVKPLKKAL--IGNKSWITGQRRTQSITRSN-LV-LK---EK---DIIHNGIIKFNPLYNWLEKDIWNY 861 (928)
Q Consensus 792 ~~~~~~Cc~~~K~~Pl~~~l--~~~~~~i~G~R~~ES~~R~~-~~-~~---~~---d~~~~~~~~~~PI~dWt~~DVw~Y 861 (928)
... ..-+.++. .+.+.+++|...+|...... .+ .+ +. .....+.-.++|+.+|+..||..|
T Consensus 62 ---~~~------~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~PL~~~~K~ei~~~ 132 (169)
T cd01995 62 ---LIF------LSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGIKIHAPLIDLSKAEIVRL 132 (169)
T ss_pred ---HHH------HHHHHHHHHHCCCCEEEEeeccCccCCCCCCCHHHHHHHHHHHHhhcCCCeEEEeCcccCCHHHHHHH
Confidence 000 00112221 26678899999988532110 00 00 10 001234556999999999999999
Q ss_pred HHHCCCCCChhhh
Q psy3753 862 INTYNVPYNTLYD 874 (928)
Q Consensus 862 i~~~~lp~npLYd 874 (928)
+++.++|+..-|.
T Consensus 133 ~~~~g~~~~~s~s 145 (169)
T cd01995 133 GGELGVPLELTWS 145 (169)
T ss_pred HhHcCCChhheee
Confidence 9999999886553
No 74
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=7.7e-08 Score=106.61 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhc----CCeEEEEcChHHHHHHHHHHHhcC--CCceEEEEcCCCCh--HHHHHHHHHHHHHcCCeEEEEe
Q psy3753 699 VLDALNNIVTDY----KPAVFASSLAAEDMVLTDLILRNN--FDINIFTLNTGRLH--SETLNMLNKIYLTYKYKIKVYY 770 (928)
Q Consensus 699 a~~~I~~~~~~~----~~~~vs~SGGKDS~vll~L~~~~~--~~i~vvf~DTg~ef--peT~~~i~~~~~~~g~~i~~~~ 770 (928)
....+.+.+.++ ++++|++||||||+++||++.+.. .++.++++|.|..- ..-.++++.+++.+++++.+.+
T Consensus 6 ~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (298)
T COG0037 6 LERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVER 85 (298)
T ss_pred HHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEE
Confidence 344445555444 589999999999999999999987 48889999999764 5677899999999998766554
Q ss_pred cCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcc-----------ee-
Q psy3753 771 PLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVL-----------KE- 836 (928)
Q Consensus 771 p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~-----------~~- 836 (928)
-....... .. + .. ....-|...+-.-+.++.+ +.+.+++|.-++|-..-..+.. +.
T Consensus 86 ~~~~~~~~----~~-~--~~---~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~~~ 155 (298)
T COG0037 86 VTDDLGRE----TL-D--GK---SICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRGLRGMPP 155 (298)
T ss_pred EEeecccc----cc-C--CC---ChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHHHHHcCcHhhHHhhCCc
Confidence 33221110 00 0 00 0111255555556666665 5689999988887762211110 11
Q ss_pred ecCCCCCe-EEEEeCcCCCHHHHHHHHHHCCCCC
Q psy3753 837 KDIIHNGI-IKFNPLYNWLEKDIWNYINTYNVPY 869 (928)
Q Consensus 837 ~d~~~~~~-~~~~PI~dWt~~DVw~Yi~~~~lp~ 869 (928)
... ..+. ..++|++.++..|+..|...+++||
T Consensus 156 ~~~-~~~~~~~iRPL~~~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 156 KRP-FEGGLLIIRPLLYVREKEIELYAKEKGLPY 188 (298)
T ss_pred ccc-cCCCCeeeeecccCCHHHHHHHHHHcCCCE
Confidence 111 1223 6899999999999999999999975
No 75
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.73 E-value=9.5e-08 Score=97.53 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=88.2
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHH-----HHHHHHHHHHHcCC--eEEEEecCchhhhHHHHHhC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSE-----TLNMLNKIYLTYKY--KIKVYYPLNSEVNNYIFKNG 784 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpe-----T~~~i~~~~~~~g~--~i~~~~p~~~~~~~~~~~~G 784 (928)
+++|++|||+||+++++++.+.+.++..+|+|+|....+ ..+..+ ....|+. .+.++......... ....+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g~~v~av~~d~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~ 78 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFTSEKAREKVEDLAR-KLARYSPGHKLVVIIFTFFVQKE-IYGYG 78 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcCCeEEEEEEeCCCCCchHHHHHHHHHHH-HHHHhCCCCceEEEeCcHHHHHH-HHHhC
Confidence 478999999999999999999998999999999975443 233333 3345654 44455433211111 11122
Q ss_pred CCCCccchhhhhhhhhhcccchHHHhh--cCCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHH
Q psy3753 785 INAFYDSVQMRKKCCYIRKVKPLKKAL--IGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYI 862 (928)
Q Consensus 785 ~~~~~~~~~~~~~Cc~~~K~~Pl~~~l--~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi 862 (928)
.+. ....-|......-+..+. .+.+.+++|...++-..-.......... ..+...++|+.+|+.+||+.|.
T Consensus 79 ~~~------~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~~-~~~~~i~rPl~~~~K~eI~~~a 151 (177)
T cd01712 79 KEK------YRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLVISS-GTDLPILRPLIGFDKEEIIGIA 151 (177)
T ss_pred CCc------cHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhhccc-CCCCeEECCCCCCCHHHHHHHH
Confidence 111 111113322222222222 2678899999887632211111111111 2356789999999999999999
Q ss_pred HHCCCC
Q psy3753 863 NTYNVP 868 (928)
Q Consensus 863 ~~~~lp 868 (928)
+..++|
T Consensus 152 ~~~gl~ 157 (177)
T cd01712 152 RRIGTY 157 (177)
T ss_pred HHcCCc
Confidence 999984
No 76
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.69 E-value=2e-07 Score=103.14 Aligned_cols=172 Identities=11% Similarity=0.150 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCCh-HHHHHHHHHHHHHcCCeEEEEecC
Q psy3753 695 FVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLH-SETLNMLNKIYLTYKYKIKVYYPL 772 (928)
Q Consensus 695 ~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~ef-peT~~~i~~~~~~~g~~i~~~~p~ 772 (928)
+++..++.|+..+.. ++++|++|||+||+|+++|+.+. +.++..+|+|+|..- .|..+..+.+++++|++++++.-.
T Consensus 2 ~~~~~~~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~ 80 (311)
T TIGR00884 2 FIEEAVEEIREQVGD-AKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAK 80 (311)
T ss_pred hHHHHHHHHHHHhCC-CcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCc
Confidence 345666677776655 78999999999999999999885 678999999999854 445445555667899998887543
Q ss_pred chhhhHHHHH-hCCCCCccchhhhhhhhhhcccchHHHhhc--C-CcEEEeeeccccc-ccccC-Ccceee-cC-----C
Q psy3753 773 NSEVNNYIFK-NGINAFYDSVQMRKKCCYIRKVKPLKKALI--G-NKSWITGQRRTQS-ITRSN-LVLKEK-DI-----I 840 (928)
Q Consensus 773 ~~~~~~~~~~-~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~-~~~~i~G~R~~ES-~~R~~-~~~~~~-d~-----~ 840 (928)
.. +... .+ ...+.. .+..|......-+.+..+ + .+.+++|.-.++- ..|.. ...+.. .. .
T Consensus 81 e~----fl~~l~~---v~~p~~-~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~~ 152 (311)
T TIGR00884 81 ER----FLSALKG---VTDPEE-KRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLPE 152 (311)
T ss_pred HH----HHhhhcC---CCChHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhccChhHhhhccCccccCCh
Confidence 21 1111 12 222221 222232223333444432 4 6688999877542 22211 000100 00 0
Q ss_pred CCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 841 HNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 841 ~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
....-.+.||.+.+.+||..|-+..|||++-.+++
T Consensus 153 ~~~~~ii~PL~~l~K~EVr~la~~lgLp~~~~~~~ 187 (311)
T TIGR00884 153 DMKLKLVEPLRELFKDEVRKLGKELGLPEEIVWRH 187 (311)
T ss_pred hhcCceEEEcccCcHHHHHHHHHHcCCCHHHhhCC
Confidence 11233699999999999999999999997666665
No 77
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.63 E-value=3.9e-07 Score=99.88 Aligned_cols=156 Identities=11% Similarity=0.136 Sum_probs=101.9
Q ss_pred CeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCchhhhHHHHH-hCCCCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLNSEVNNYIFK-NGINAF 788 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~~~~~~~~~~-~G~~~~ 788 (928)
+++|++|||+||+|+++|+.+. +.++.++|+|+|..-.+-.+.++++.+.++. +++++.... .+... .+.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e----~fl~~l~~v--- 73 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASE----RFLSALKGV--- 73 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcH----HHHHHhcCC---
Confidence 4789999999999999999985 7789999999998655556788888888876 888774431 11221 221
Q ss_pred ccchhhhhhhhhhcccchHHHhhc--C-CcEEEeeecccccc-cccCC---cceeecCC------CCCeEEEEeCcCCCH
Q psy3753 789 YDSVQMRKKCCYIRKVKPLKKALI--G-NKSWITGQRRTQSI-TRSNL---VLKEKDII------HNGIIKFNPLYNWLE 855 (928)
Q Consensus 789 ~~~~~~~~~Cc~~~K~~Pl~~~l~--~-~~~~i~G~R~~ES~-~R~~~---~~~~~d~~------~~~~~~~~PI~dWt~ 855 (928)
.++. ..++.|......-+.+..+ + ...+++|.-.++-. .|-.. ..+....+ ....-.+.||.+++.
T Consensus 74 ~npe-~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~a~~~~~vi~PL~~l~K 152 (295)
T cd01997 74 TDPE-EKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPEDMKLKLIEPLRDLFK 152 (295)
T ss_pred CCHH-HHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccccccccccccccchHhhCCcccccccCcH
Confidence 1222 2233333333344444443 5 67889998776531 22110 01110000 012235999999999
Q ss_pred HHHHHHHHHCCCCCChhhhc
Q psy3753 856 KDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 856 ~DVw~Yi~~~~lp~npLYd~ 875 (928)
+||-.|-+..|||..-++++
T Consensus 153 ~EVR~lar~lGLp~~~~~~~ 172 (295)
T cd01997 153 DEVRELGRELGLPEEIVERH 172 (295)
T ss_pred HHHHHHHHHcCCCchhhCCC
Confidence 99999999999998777776
No 78
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.57 E-value=3.9e-07 Score=102.64 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=106.3
Q ss_pred hcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCC--hHHHHHHHHHHHHHcCCeEEEEecCchhhhHHH-----H
Q psy3753 709 DYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRL--HSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYI-----F 781 (928)
Q Consensus 709 ~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~e--fpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~-----~ 781 (928)
..++++|++|||+||+|+++|+.+.+.++..++++.+.. -++..+.++++++.+|++++++..... ++..+ .
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~-f~~~v~~~f~~ 82 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKV-FRKQIIDYFID 82 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHH-HHHHHHhhhhh
Confidence 346899999999999999999999999999999987532 345678899999999999888753211 11111 1
Q ss_pred Hh--CCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccc--cccccCCcceeecCCC----------CCe-
Q psy3753 782 KN--GINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQ--SITRSNLVLKEKDIIH----------NGI- 844 (928)
Q Consensus 782 ~~--G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~E--S~~R~~~~~~~~d~~~----------~~~- 844 (928)
.+ |.. + ..-..|....|..-+.++.+ +.+.++||.-+.- ...+..+. ...|... ...
T Consensus 83 ~y~~g~t----p-npC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~-~g~D~~kDQSyfL~~l~~~~l 156 (360)
T PRK14665 83 EYMSGHT----P-VPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWIDGNYYIT-PAEDVDKDQSFFLWGLRQEIL 156 (360)
T ss_pred HHhccCC----C-CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceeccCCcEEEE-eecCCCCCceEEecCCCHHHH
Confidence 11 210 0 11234556677666666653 5678888854321 00111000 0001000 011
Q ss_pred -EEEEeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCC
Q psy3753 845 -IKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCT 886 (928)
Q Consensus 845 -~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct 886 (928)
-.+.||.+++.+||-++.++.+++. ..++ =.|-|+++|+
T Consensus 157 ~~~ifPLg~~~K~eVr~~A~~~gl~~--~a~k-~eSq~iCF~~ 196 (360)
T PRK14665 157 QRMLLPMGGMTKSEARAYAAERGFEK--VAKK-RDSLGVCFCP 196 (360)
T ss_pred hheeccCcCCCHHHHHHHHHHCCCCc--cCcC-CCCCccccCC
Confidence 1389999999999999999999842 2222 4677877885
No 79
>PRK14561 hypothetical protein; Provisional
Probab=98.57 E-value=5.5e-07 Score=93.18 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=92.9
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHH---HHHhCCCCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNY---IFKNGINAF 788 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~---~~~~G~~~~ 788 (928)
+++|++||||||+++++++.+. .++.++++|.+.. + -.++++.+++.+|++.+++........+. +...+.|.
T Consensus 2 kV~ValSGG~DSslll~~l~~~-~~v~a~t~~~g~~-~-e~~~a~~~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P~- 77 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-YDVELVTVNFGVL-D-SWKHAREAAKALGFPHRVLELDREILEKAVDMIIEDGYPN- 77 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-CCeEEEEEecCch-h-HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHcCCCC-
Confidence 4789999999999999999877 6678888988862 3 37899999999999988876554321111 22222111
Q ss_pred ccchhhhhhhhhhcccchHHHhhcCCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHC
Q psy3753 789 YDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTY 865 (928)
Q Consensus 789 ~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~ 865 (928)
..|. .+...-+..+..+..++++|...++...-..++.+..-....++..++||+.|+.+||..|.+..
T Consensus 78 -------~~~~-~l~~~~l~~~a~g~~~Ia~G~n~DD~~et~~r~~~~a~~~~~gi~iirPL~~~~K~eI~~la~~l 146 (194)
T PRK14561 78 -------NAIQ-YVHEHALEALAEEYDVIADGTRRDDRVPKLSRSEIQSLEDRKGVQYIRPLLGFGRKTIDRLVERL 146 (194)
T ss_pred -------chhH-HHHHHHHHHHHcCCCEEEEEecCCCcchhccHHHHhhhhcCCCcEEEeeCCCCCHHHHHHHHHhh
Confidence 1122 22222233333677889999999996521111211111012355579999999999999999865
No 80
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.55 E-value=2.7e-07 Score=107.12 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=99.4
Q ss_pred HHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-----CCCceEEEEcCCCC--hHHHHHHHHHHHHHcCCeEEEEecCc
Q psy3753 701 DALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-----NFDINIFTLNTGRL--HSETLNMLNKIYLTYKYKIKVYYPLN 773 (928)
Q Consensus 701 ~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-----~~~i~vvf~DTg~e--fpeT~~~i~~~~~~~g~~i~~~~p~~ 773 (928)
..+...++..++++|++|||+||+||||++.+. +.++.++++|.|.. ..+..+|++++++.+|+++++.+.+.
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~ 85 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQL 85 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 445555666689999999999999999999753 35788999999975 33456899999999999988765431
Q ss_pred hhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeecccccccccCC-----------cce-eecCCC
Q psy3753 774 SEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSITRSNL-----------VLK-EKDIIH 841 (928)
Q Consensus 774 ~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~~R~~~-----------~~~-~~d~~~ 841 (928)
.. .+. . ...|.....-.-+.+.+....++++|.-.+|...=-.+ .-+ .... .
T Consensus 86 ~~-------~~~-~-------~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm~~~~~-~ 149 (436)
T PRK10660 86 DQ-------RGL-G-------IEAAARQARYQAFARTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSP-F 149 (436)
T ss_pred cC-------CCC-C-------HHHHHHHHHHHHHHHHHHhCCEEEEcCchHHHHHHHHHHHHcCCChhhccccceecc-c
Confidence 10 010 0 01111111112233333334577888777665321100 000 0000 1
Q ss_pred CCeEEEEeCcCCCHHHHHHHHHHCCCCCCh
Q psy3753 842 NGIIKFNPLYNWLEKDIWNYINTYNVPYNT 871 (928)
Q Consensus 842 ~~~~~~~PI~dWt~~DVw~Yi~~~~lp~np 871 (928)
.+...++|+++.+.+|+..|.+.++|||..
T Consensus 150 ~~~~liRPLL~~~k~ei~~ya~~~~l~~~~ 179 (436)
T PRK10660 150 AGTRLIRPLLARSREELEQYAQAHGLRWIE 179 (436)
T ss_pred CCCcEeCCCccCCHHHHHHHHHHcCCCEEE
Confidence 234579999999999999999999999754
No 81
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.55 E-value=6.8e-07 Score=100.92 Aligned_cols=155 Identities=12% Similarity=-0.001 Sum_probs=100.8
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCC--------hHHHHHHHHHHHHHcCCeEEEEecCchhhh----HH
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRL--------HSETLNMLNKIYLTYKYKIKVYYPLNSEVN----NY 779 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~e--------fpeT~~~i~~~~~~~g~~i~~~~p~~~~~~----~~ 779 (928)
+++|++|||+||+|+++|+.+.+.++..+|+|++.. .++-.++++++++.+|++++++.-...... .+
T Consensus 1 kVlValSGGvDSsvla~lL~~~g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~ 80 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPF 80 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHH
Confidence 478999999999999999999988899999998742 345678999999999999888754332211 12
Q ss_pred HHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCccee--ecCCC---------C---C
Q psy3753 780 IFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKE--KDIIH---------N---G 843 (928)
Q Consensus 780 ~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~--~d~~~---------~---~ 843 (928)
+..+..-..+.+ -..|....|..-+.+..+ +.+.+.||.-+++...-.....+- .+... + .
T Consensus 81 i~~~~~g~tpnp---c~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~~l 157 (349)
T cd01998 81 LEEYKKGRTPNP---DILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQL 157 (349)
T ss_pred HHHHHcCCCCCc---hHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCHHHH
Confidence 222211011111 123455567667666554 667889998766532110001010 01000 0 0
Q ss_pred eEEEEeCcCCCHHHHHHHHHHCCCCC
Q psy3753 844 IIKFNPLYNWLEKDIWNYINTYNVPY 869 (928)
Q Consensus 844 ~~~~~PI~dWt~~DVw~Yi~~~~lp~ 869 (928)
.-.+.||.+++.+||..|.+.++||.
T Consensus 158 ~~ii~PL~~~~K~eVr~~A~~~gl~~ 183 (349)
T cd01998 158 SRLIFPLGDLTKPEVREIAKELGLPV 183 (349)
T ss_pred hheeecCCCCCHHHHHHHHHHcCCCC
Confidence 23699999999999999999999984
No 82
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.55 E-value=3.6e-07 Score=103.00 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=102.0
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCC----------hHHHHHHHHHHHHHcCCeEEEEecCchhhh----
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRL----------HSETLNMLNKIYLTYKYKIKVYYPLNSEVN---- 777 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~e----------fpeT~~~i~~~~~~~g~~i~~~~p~~~~~~---- 777 (928)
+++|++|||+||+|+++|+.+.+.++..++++++.. .++-.++++++++.+|++++++.-......
T Consensus 2 kVlValSGGvDSsvla~lL~~~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~ 81 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVID 81 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcCCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHH
Confidence 588999999999999999999988899999998643 356678999999999999888754322111
Q ss_pred HHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccc----cCCc------ceeecCCCCCeE
Q psy3753 778 NYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITR----SNLV------LKEKDIIHNGII 845 (928)
Q Consensus 778 ~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R----~~~~------~~~~d~~~~~~~ 845 (928)
.++..+..-..+.+ -..|....|..-|.+..+ +.+.++||.-+++.... ..-. +...-....-.-
T Consensus 82 ~~~~~~~~g~tpnp---c~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~~L~rg~d~~kDqsy~l~~l~~~~l~~ 158 (346)
T PRK00143 82 YFLDEYKAGRTPNP---CVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGRELLRGVDPNKDQSYFLYQLTQEQLAK 158 (346)
T ss_pred HHHHHHHcCCCCCc---ChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccceEEEccCCCcChhhhhccCCHHHhcc
Confidence 12222211011111 123444467666666664 67788999877765321 1000 000000000113
Q ss_pred EEEeCcCCCHHHHHHHHHHCCCCCC
Q psy3753 846 KFNPLYNWLEKDIWNYINTYNVPYN 870 (928)
Q Consensus 846 ~~~PI~dWt~~DVw~Yi~~~~lp~n 870 (928)
.+.||.+++.+||..|.+.++||+.
T Consensus 159 ~i~PL~~~~K~eVr~~A~~~gl~~~ 183 (346)
T PRK00143 159 LLFPLGELTKPEVREIAEEAGLPVA 183 (346)
T ss_pred eeccCccCCHHHHHHHHHHcCCCcC
Confidence 6999999999999999999999863
No 83
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.54 E-value=4.9e-07 Score=93.80 Aligned_cols=151 Identities=16% Similarity=0.200 Sum_probs=106.7
Q ss_pred HHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhH
Q psy3753 700 LDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNN 778 (928)
Q Consensus 700 ~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~ 778 (928)
++.|+.+++..++++|+||||+||++++.++.++ |.++..+++|+.+-.+...+-+..+++.+|++-+++..+.-
T Consensus 7 l~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~---- 82 (269)
T COG1606 7 LERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRM---- 82 (269)
T ss_pred HHHHHHHHhhcCeEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhc----
Confidence 4556666666679999999999999999999774 68999999999999998888889999999998877744321
Q ss_pred HHHHhCCCCCc-cchhhhhhhhhhcccc---hHHHhh--cCCcEEEeeeccccccc-ccCCcceeecCCCCCeEEEEeCc
Q psy3753 779 YIFKNGINAFY-DSVQMRKKCCYIRKVK---PLKKAL--IGNKSWITGQRRTQSIT-RSNLVLKEKDIIHNGIIKFNPLY 851 (928)
Q Consensus 779 ~~~~~G~~~~~-~~~~~~~~Cc~~~K~~---Pl~~~l--~~~~~~i~G~R~~ES~~-R~~~~~~~~d~~~~~~~~~~PI~ 851 (928)
+ +.|. .+. .. |+..|.. -+.+.. .|+++++.|+.++|... |-...... ..-..+|++
T Consensus 83 -----~-~~~~~n~~---~r-CY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RPG~rA~k------E~gi~sPl~ 146 (269)
T COG1606 83 -----D-PEFKENPE---NR-CYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRPGLRALK------ELGIRSPLA 146 (269)
T ss_pred -----c-hhhccCCC---Cc-chHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCcchhhHH------hcCCCChHH
Confidence 1 1121 111 11 4444433 233333 27999999999999854 11111111 011367888
Q ss_pred CC--CHHHHHHHHHHCCCCCC
Q psy3753 852 NW--LEKDIWNYINTYNVPYN 870 (928)
Q Consensus 852 dW--t~~DVw~Yi~~~~lp~n 870 (928)
+. +.+||-.|.+..|+++.
T Consensus 147 e~gitk~eIre~a~~lgl~~~ 167 (269)
T COG1606 147 EFGITKKEIREIAKSLGLPTW 167 (269)
T ss_pred HhCCcHHHHHHHHHHcCCCcc
Confidence 75 99999999999999876
No 84
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.54 E-value=8e-07 Score=100.17 Aligned_cols=157 Identities=12% Similarity=0.057 Sum_probs=98.3
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCC----------ChHHHHHHHHHHHHHcCCeEEEEecCchhh----h
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGR----------LHSETLNMLNKIYLTYKYKIKVYYPLNSEV----N 777 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~----------efpeT~~~i~~~~~~~g~~i~~~~p~~~~~----~ 777 (928)
+++|++|||+||+|+++|+.+.+.++..+|+++.. ..++-.+.++++++.+|++++++.-..... .
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~ 81 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFE 81 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcCCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHH
Confidence 58999999999999999999999899999995421 124567888999999999988775432211 1
Q ss_pred HHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc---CCcEEEeeecc---cccccccCCcceeecCCC-------CC-
Q psy3753 778 NYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI---GNKSWITGQRR---TQSITRSNLVLKEKDIIH-------NG- 843 (928)
Q Consensus 778 ~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~---~~~~~i~G~R~---~ES~~R~~~~~~~~d~~~-------~~- 843 (928)
.+...+..-..+.+ --.|....|..-|.++.+ +.+.+.||.-+ ++......+.....+.+. +.
T Consensus 82 ~~~~~y~~g~tpnp---C~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~kDqsy~L~~l~~~ 158 (352)
T TIGR00420 82 PFIQEYKEGRTPNP---DILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLYHLSHE 158 (352)
T ss_pred HHHHHHHcCCCCCc---chhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCcCcceecccCCHH
Confidence 12222211000110 123445566666665552 66889999855 222111111111111000 00
Q ss_pred --eEEEEeCcCCCHHHHHHHHHHCCCCCCh
Q psy3753 844 --IIKFNPLYNWLEKDIWNYINTYNVPYNT 871 (928)
Q Consensus 844 --~~~~~PI~dWt~~DVw~Yi~~~~lp~np 871 (928)
.-.+.||.+|+.+||..|.+.+++|+..
T Consensus 159 ~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~ 188 (352)
T TIGR00420 159 QLAKLLFPLGELLKPEVRQIAKNAGLPTAE 188 (352)
T ss_pred HhhhhcccCCCCCHHHHHHHHHHcCCCCCC
Confidence 2258999999999999999999998644
No 85
>PRK08349 hypothetical protein; Validated
Probab=98.49 E-value=8.2e-07 Score=92.37 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=87.8
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCC-hHHHHHHHHHHHHHcCCeE---EEEecCc--hhhhHHHHHhCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRL-HSETLNMLNKIYLTYKYKI---KVYYPLN--SEVNNYIFKNGI 785 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~e-fpeT~~~i~~~~~~~g~~i---~~~~p~~--~~~~~~~~~~G~ 785 (928)
++++++||||||+|+++++.+.+.++..+|+|++.. .....+.++++.+.+|+++ .++.-.. ......+.+.+.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g~~v~av~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 81 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRGVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRELKK 81 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHhhCC
Confidence 578999999999999999999988999999998532 1223344455555556654 2221100 000011111111
Q ss_pred CCCccchhhhhhh--hhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHH
Q psy3753 786 NAFYDSVQMRKKC--CYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNY 861 (928)
Q Consensus 786 ~~~~~~~~~~~~C--c~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Y 861 (928)
....| |......-+..+.. +.+.+++|...+|...-...+....+. ..+...++|+.+++.+||..|
T Consensus 82 --------~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl~~~~~-~~~i~i~rPL~~~~K~eI~~~ 152 (198)
T PRK08349 82 --------EKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLDNLMVIST-ATDLPVLRPLIGLDKEEIVKI 152 (198)
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHHhcccc-ccCCeEEcCCCCCCHHHHHHH
Confidence 01123 44444344444432 678999998777753222212222211 123457899999999999999
Q ss_pred HHHCCCC
Q psy3753 862 INTYNVP 868 (928)
Q Consensus 862 i~~~~lp 868 (928)
.+..|++
T Consensus 153 a~~~g~~ 159 (198)
T PRK08349 153 AKEIGTF 159 (198)
T ss_pred HHHcCCh
Confidence 9999953
No 86
>PLN02347 GMP synthetase
Probab=98.44 E-value=1.7e-06 Score=102.25 Aligned_cols=177 Identities=11% Similarity=0.112 Sum_probs=117.1
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHh-cCCCceEEEEcCCCC-hHHHHHHHHHHHHHcCCeEEE
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILR-NNFDINIFTLNTGRL-HSETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~-~~~~i~vvf~DTg~e-fpeT~~~i~~~~~~~g~~i~~ 768 (928)
+...+++..++.|++.+...+++++++|||+||+|+++|+.+ .+.++..+|+|+|.. ..|..+-++.+++++|+++++
T Consensus 210 ~~~~~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~v 289 (536)
T PLN02347 210 KMQDVLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTC 289 (536)
T ss_pred CcchHHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEE
Confidence 455666677777777777778899999999999999999999 577899999999974 567766668899999999998
Q ss_pred EecCchhhhHHHHH-hCCCCCccchhhhhhhhhhcccchHHHhhc------C--CcEEEeeecccc---cccccC-----
Q psy3753 769 YYPLNSEVNNYIFK-NGINAFYDSVQMRKKCCYIRKVKPLKKALI------G--NKSWITGQRRTQ---SITRSN----- 831 (928)
Q Consensus 769 ~~p~~~~~~~~~~~-~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~------~--~~~~i~G~R~~E---S~~R~~----- 831 (928)
+.-.. .++.. .| +.++. ..++-|...-++-+.+..+ + ....+.|+-.++ |..|-.
T Consensus 290 vd~~e----~fl~~l~~---~~~pe-~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~ 361 (536)
T PLN02347 290 VDASE----RFLSKLKG---VTDPE-KKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTH 361 (536)
T ss_pred EeCcH----HHHhhCCC---CCChH-HhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCCCCCcccc
Confidence 85442 22332 33 33332 2233343322233433331 2 255677875544 433422
Q ss_pred CcceeecCCC------CCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 832 LVLKEKDIIH------NGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 832 ~~~~~~d~~~------~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
...+....+. ...-.+.||.+++..||-+..+..|||-+-.+++
T Consensus 362 ~~~ik~hhn~~~l~~~~~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~~ 411 (536)
T PLN02347 362 SHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRH 411 (536)
T ss_pred ccceeeecccccChHHHHCccccchhhCcHHHHHHHHHHcCCCHHHhcCC
Confidence 1122111110 0122589999999999999999999997667776
No 87
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.44 E-value=2.8e-06 Score=91.64 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhcC--CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEE
Q psy3753 693 NSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRNN--FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 693 ~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~~--~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~ 768 (928)
+...+.....|++.+++. ++++|++|||+||+++++|+.+.. .++..++++++...++..+.++.+.+.+|++.++
T Consensus 4 ~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~ 83 (248)
T cd00553 4 EEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALGIEHVN 83 (248)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEE
Confidence 344455556666666554 589999999999999999999976 4788899999887788999999999999999887
Q ss_pred EecCchhhhHHHHHhCCCCCccchhhhhhh--hhhcccchHHHhhcCCcEEE--eeecccccccccCCcceeecCCCCCe
Q psy3753 769 YYPLNSEVNNYIFKNGINAFYDSVQMRKKC--CYIRKVKPLKKALIGNKSWI--TGQRRTQSITRSNLVLKEKDIIHNGI 844 (928)
Q Consensus 769 ~~p~~~~~~~~~~~~G~~~~~~~~~~~~~C--c~~~K~~Pl~~~l~~~~~~i--~G~R~~ES~~R~~~~~~~~d~~~~~~ 844 (928)
+..... +..+...... ...........| |...+..-+..+.+.....+ ||- ++|.... .+... ....
T Consensus 84 i~i~~~-~~~~~~~~~~-~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G----~~t~~--gd~~ 154 (248)
T cd00553 84 IDIDPA-VEAFLALLGE-SGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLG----YFTKY--GDGA 154 (248)
T ss_pred eccHHH-HHHHHHHHhh-hcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhC----Ceecc--CCcc
Confidence 754322 2222211110 000011111112 22233333444433333333 443 2333221 11111 1233
Q ss_pred EEEEeCcCCCHHHHHHHHHHCCCCCC
Q psy3753 845 IKFNPLYNWLEKDIWNYINTYNVPYN 870 (928)
Q Consensus 845 ~~~~PI~dWt~~DVw~Yi~~~~lp~n 870 (928)
..++||.+.+..+|+.+.+..++|.+
T Consensus 155 ~~i~Pl~~l~K~eV~~la~~~~ip~~ 180 (248)
T cd00553 155 ADINPIGDLYKTQVRELARYLGVPES 180 (248)
T ss_pred cCccccCCCcHHHHHHHHHHHCchHH
Confidence 46899999999999999999999853
No 88
>PRK13980 NAD synthetase; Provisional
Probab=98.40 E-value=4.6e-06 Score=90.73 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=105.6
Q ss_pred hhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhcC--CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEE
Q psy3753 692 LNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRNN--FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIK 767 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~~--~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~ 767 (928)
.+...+.....|++.+.++ ++++|++|||+||+++++|+.+.. .++..++++++...++..+.++.+++.+|++.+
T Consensus 10 ~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~ 89 (265)
T PRK13980 10 YEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELVAEDLGIEYK 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 4445566667777777765 489999999999999999999863 578899999998778899999999999999988
Q ss_pred EEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCC--cEEEeeecccccccccCCcceeecCCCCCeE
Q psy3753 768 VYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGN--KSWITGQRRTQSITRSNLVLKEKDIIHNGII 845 (928)
Q Consensus 768 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~--~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~ 845 (928)
++.-. .....+..... .. ........ |...+..-+..+.+.. .++-||-+ +|... ...... .....
T Consensus 90 ~i~i~-~~~~~~~~~~~--~~-~~~~~~n~-~aR~R~~~L~~~A~~~g~lvlgTgn~-sE~~~----G~~t~~--gD~~~ 157 (265)
T PRK13980 90 VIEIT-PIVDAFFSAIP--DA-DRLRVGNI-MARTRMVLLYDYANRENRLVLGTGNK-SELLL----GYFTKY--GDGAV 157 (265)
T ss_pred EEECH-HHHHHHHHHcc--cc-cchHHHHH-HHHHHHHHHHHHHhhcCCEEEcCCCH-hHHHh----CCccCC--CCccc
Confidence 77422 11222211111 10 00000111 2222333334333333 33334433 22211 111111 11233
Q ss_pred EEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 846 KFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 846 ~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
.++||.+++..||+...+..++| ...+++
T Consensus 158 ~l~Pl~~l~K~eV~~la~~lgip-~~i~~k 186 (265)
T PRK13980 158 DLNPIGDLYKTQVRELARHLGVP-EDIIEK 186 (265)
T ss_pred CcccCCCCcHHHHHHHHHHHCch-HHHhCC
Confidence 59999999999999999999997 334544
No 89
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.34 E-value=4.3e-06 Score=87.19 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=95.6
Q ss_pred eEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhh-hH-HHHHhCCCCCcc
Q psy3753 713 AVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEV-NN-YIFKNGINAFYD 790 (928)
Q Consensus 713 ~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~-~~-~~~~~G~~~~~~ 790 (928)
++|++|||+||+++++++.+.+.++..+++|.+....+-.++++.+.+.+|++.+++....... .. .+..........
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDEGYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALTDESEIPPQK 80 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHcCCcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhcccccccccCCCCCCCcC
Confidence 4789999999999999999988889999999987655667899999999999887664431110 00 000000000000
Q ss_pred chh--hhhhhhh----hcccchHHHhh--cCCcEEEeeeccccccc----ccC-----CcceeecCCCCCeEEEEeCcCC
Q psy3753 791 SVQ--MRKKCCY----IRKVKPLKKAL--IGNKSWITGQRRTQSIT----RSN-----LVLKEKDIIHNGIIKFNPLYNW 853 (928)
Q Consensus 791 ~~~--~~~~Cc~----~~K~~Pl~~~l--~~~~~~i~G~R~~ES~~----R~~-----~~~~~~d~~~~~~~~~~PI~dW 853 (928)
... ..+.+|. .+...-+..+. .+...+++|.-.+|-.. |.. ....+... ..++.-++|+.+|
T Consensus 81 ~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~~~-~~~~~i~~Pl~~~ 159 (201)
T TIGR00364 81 SNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNLGM-LTPVKIRAPLMDL 159 (201)
T ss_pred ccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHhhc-CCCeEEEECCcCC
Confidence 000 0111111 11111122222 26778899998877421 221 01111111 2345569999999
Q ss_pred CHHHHHHHHHHCC---CCCChh
Q psy3753 854 LEKDIWNYINTYN---VPYNTL 872 (928)
Q Consensus 854 t~~DVw~Yi~~~~---lp~npL 872 (928)
+..||-++.++.| +|+.+-
T Consensus 160 ~K~eI~~la~~~g~~~~~~~~t 181 (201)
T TIGR00364 160 TKAEIVQLADELGVLDLVIKLT 181 (201)
T ss_pred CHHHHHHHHHHcCCccccHhhC
Confidence 9999999999999 765443
No 90
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.33 E-value=2.4e-06 Score=85.02 Aligned_cols=113 Identities=13% Similarity=0.045 Sum_probs=75.0
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCC-CceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHH-HHhCCCCCc
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNF-DINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYI-FKNGINAFY 789 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~-~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~-~~~G~~~~~ 789 (928)
.++|++||||||+++++++.+.+. ++.++++|.+...++..++++++++. |+++..+........... ..... ...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~~~l~~-~~~ 80 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQLARFKA-KVG 80 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHHHHHhc-ccC
Confidence 478999999999999999988765 77789999999889999999999999 888776655544322111 11000 000
Q ss_pred cchhhhhhhhhhcccchHHHhh-c-CCcEEEeeeccccccccc
Q psy3753 790 DSVQMRKKCCYIRKVKPLKKAL-I-GNKSWITGQRRTQSITRS 830 (928)
Q Consensus 790 ~~~~~~~~Cc~~~K~~Pl~~~l-~-~~~~~i~G~R~~ES~~R~ 830 (928)
.+ ...|...+. .-+.+.. + +..++++|..++|.....
T Consensus 81 ~p---~~~~~~~~~-~~~~~~A~~~g~~~il~G~~~de~~~Gy 119 (154)
T cd01996 81 DP---CWPCDTAIF-TSLYKVALKFGIPLIITGENPAQEFGGI 119 (154)
T ss_pred CC---ChhhhHHHH-HHHHHHHHHhCcCEEEeCcCHHHhcccc
Confidence 00 112333332 2233333 2 567899999999986554
No 91
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.32 E-value=1.2e-05 Score=86.86 Aligned_cols=165 Identities=13% Similarity=0.061 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhcCC-CceEEEEcCCCC-hHHHHHHHHHHHHHcCCeEEEEec
Q psy3753 696 VKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRNNF-DINIFTLNTGRL-HSETLNMLNKIYLTYKYKIKVYYP 771 (928)
Q Consensus 696 ~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~~~-~i~vvf~DTg~e-fpeT~~~i~~~~~~~g~~i~~~~p 771 (928)
.+...+.|+..+++. +.++|++|||+||+++++|+.+... ++..++++.+.. .++..++++++++.+|++.+++.-
T Consensus 6 ~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i 85 (250)
T TIGR00552 6 VEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDI 85 (250)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcc
Confidence 345556666666654 5799999999999999999988754 777777777643 456789999999999999887633
Q ss_pred CchhhhHHHH-HhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCCCCeEEEE
Q psy3753 772 LNSEVNNYIF-KNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFN 848 (928)
Q Consensus 772 ~~~~~~~~~~-~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~ 848 (928)
... ...+.. ........+.. .....|...+..-|....+ +..++.||-+.+.... ..... ......++
T Consensus 86 ~~~-~~~~~~~~~~~~~~~~~~-~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~G-----~~t~~--gd~~~~i~ 156 (250)
T TIGR00552 86 API-AASFQAQTETGDELSDFL-AKGNLKARLRMAALYAIANKHNLLVLGTGNKSELMLG-----YFTKY--GDGGCDIA 156 (250)
T ss_pred hHH-HHHHHHHhccccCCchHH-HHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhhC-----Ceecc--cCCccCcc
Confidence 221 111111 00111111100 0112244455555555553 4456667777543211 11111 11234699
Q ss_pred eCcCCCHHHHHHHHHHCCCCC
Q psy3753 849 PLYNWLEKDIWNYINTYNVPY 869 (928)
Q Consensus 849 PI~dWt~~DVw~Yi~~~~lp~ 869 (928)
||.+.+..+|+.|.+.+++|.
T Consensus 157 PL~~l~K~eV~~lA~~~g~p~ 177 (250)
T TIGR00552 157 PIGDLFKTQVYELAKRLNVPE 177 (250)
T ss_pred ccCCCcHHHHHHHHHHHCccH
Confidence 999999999999999999974
No 92
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.28 E-value=6.2e-06 Score=93.81 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=95.8
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCchhhhHHHHHhCCCCCcc
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLNSEVNNYIFKNGINAFYD 790 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~~~~~~~~~~~G~~~~~~ 790 (928)
+++|++|||+||+++++++.+.+.++..+++|+|.. .+-.+.+++.++.+|+ +++++.... ++...+..+....
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g~~V~av~id~Gq~-~~e~~~a~~~a~~lGi~~~~viD~~~----ef~~~~~~~~i~~ 75 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQP-EEDIDAIPEKALEYGAENHYTIDARE----EFVKDYGFAAIQA 75 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEEEecCCC-hHHHHHHHHHHHHhCCCeEEEEeCHH----HHHHhhchhhhcC
Confidence 478999999999999999999888999999999954 5667888999999997 677664322 2222323222211
Q ss_pred chhhhhhhh-hhccc---chH-----HHhh--cCCcEEEeeeccccccc-ccCCcceeecCCCCCeEEEEeCcC--CCHH
Q psy3753 791 SVQMRKKCC-YIRKV---KPL-----KKAL--IGNKSWITGQRRTQSIT-RSNLVLKEKDIIHNGIIKFNPLYN--WLEK 856 (928)
Q Consensus 791 ~~~~~~~Cc-~~~K~---~Pl-----~~~l--~~~~~~i~G~R~~ES~~-R~~~~~~~~d~~~~~~~~~~PI~d--Wt~~ 856 (928)
....|| +.++. +|+ .+.. .+.++++.|........ |-.++.... .++.-.+.|+.+ ++.+
T Consensus 76 ---n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~---~~~l~viaPLrew~l~r~ 149 (394)
T TIGR00032 76 ---NAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLL---NPDLKVIAPWRDLNFTRE 149 (394)
T ss_pred ---CccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHh---CCCCeEECchhhcCCCHH
Confidence 122334 23332 122 2222 25678888875443322 322211111 234557999955 5999
Q ss_pred HHHHHHHHCCCCCC
Q psy3753 857 DIWNYINTYNVPYN 870 (928)
Q Consensus 857 DVw~Yi~~~~lp~n 870 (928)
|+-.|.+++|+|+.
T Consensus 150 ei~~ya~~~Gip~~ 163 (394)
T TIGR00032 150 EEIEYAIQCGIPYP 163 (394)
T ss_pred HHHHHHHHcCCCee
Confidence 99999999999984
No 93
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.27 E-value=3.8e-06 Score=95.26 Aligned_cols=155 Identities=14% Similarity=0.068 Sum_probs=94.4
Q ss_pred eEEEEcChHHHHHHHHHHHhcCC-CceEEEEcCCCChHHHHHHHHHHHHHcCCe-EEEEecCchhh----hHHHHHhCCC
Q psy3753 713 AVFASSLAAEDMVLTDLILRNNF-DINIFTLNTGRLHSETLNMLNKIYLTYKYK-IKVYYPLNSEV----NNYIFKNGIN 786 (928)
Q Consensus 713 ~~vs~SGGKDS~vll~L~~~~~~-~i~vvf~DTg~efpeT~~~i~~~~~~~g~~-i~~~~p~~~~~----~~~~~~~G~~ 786 (928)
++|+||||.||+++++++.+.+. ++..+++|+|..- +-.+.+++.++.+|++ .+++.-..... ...+..+...
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~~-~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an~~~ 79 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPE-EEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANALY 79 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCcc-hhHHHHHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhCccc
Confidence 57999999999999999988754 8999999999643 3348899999999985 66553321111 1112222110
Q ss_pred -C-CccchhhhhhhhhhcccchHHHhh--cCCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCC---CHHHHH
Q psy3753 787 -A-FYDSVQMRKKCCYIRKVKPLKKAL--IGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNW---LEKDIW 859 (928)
Q Consensus 787 -~-~~~~~~~~~~Cc~~~K~~Pl~~~l--~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dW---t~~DVw 859 (928)
. |+.+. -+|.-....-+.++. .+.+++..|........+...+.+..- .+..-.+.|+.+| +.+|+.
T Consensus 80 ~g~y~l~t----~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al--~pel~ViaPlre~~~~sr~ev~ 153 (385)
T cd01999 80 EGTYPLGT----ALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYAL--NPDLKIIAPWRDWEFLSREEEI 153 (385)
T ss_pred cCCCcCCc----HhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhh--CCCCEEEcchhhhhcCCHHHHH
Confidence 0 11110 113222222223333 267788888865322222211111111 2355679999999 999999
Q ss_pred HHHHHCCCCCChhhh
Q psy3753 860 NYINTYNVPYNTLYD 874 (928)
Q Consensus 860 ~Yi~~~~lp~npLYd 874 (928)
.|.+++|||+..-..
T Consensus 154 ~~A~~~Gip~~~~~~ 168 (385)
T cd01999 154 EYAEEHGIPVPVTKK 168 (385)
T ss_pred HHHHHcCCCCcccCC
Confidence 999999999875433
No 94
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.20 E-value=1.3e-05 Score=84.77 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=97.7
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCe-EEEEecCchh-hhH-HHHHh--CC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYK-IKVYYPLNSE-VNN-YIFKN--GI 785 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~-i~~~~p~~~~-~~~-~~~~~--G~ 785 (928)
++++|.||||.||++++.++.+.+.++..+++|.|.....-++.++++++++|++ .+++.-+.-. +.. -+... ..
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~~~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s~Lt~~~~~~ 81 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPV 81 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccccC
Confidence 4689999999999999999988877899999999987777788999999999995 5554332100 000 00000 00
Q ss_pred CCCcc-chhhhhhhhhhcccc--hHHHh-h--cCCcEEEeeecccc-cccccCCc----c----eeecCCCCCeEEEEeC
Q psy3753 786 NAFYD-SVQMRKKCCYIRKVK--PLKKA-L--IGNKSWITGQRRTQ-SITRSNLV----L----KEKDIIHNGIIKFNPL 850 (928)
Q Consensus 786 ~~~~~-~~~~~~~Cc~~~K~~--Pl~~~-l--~~~~~~i~G~R~~E-S~~R~~~~----~----~~~d~~~~~~~~~~PI 850 (928)
+.+.. ....+..|-.-++.. -+... . .+.+.+++|+-.+| |.-|-..+ . +.... ..++--..|+
T Consensus 82 p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~~~-~~~i~I~aPl 160 (231)
T PRK11106 82 PDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGM-AKDIRFETPL 160 (231)
T ss_pred CccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHHhcc-CCCcEEEecC
Confidence 11100 000112221111111 11211 1 36788999999888 44443321 1 11111 1245679999
Q ss_pred cCCCHHHHHHHHHHCC-CCC
Q psy3753 851 YNWLEKDIWNYINTYN-VPY 869 (928)
Q Consensus 851 ~dWt~~DVw~Yi~~~~-lp~ 869 (928)
.+|+..||+..-...+ +|+
T Consensus 161 ~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 161 MWLNKAETWALADYYGQLDL 180 (231)
T ss_pred CCCCHHHHHHHHHHcCCccc
Confidence 9999999999999999 887
No 95
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.19 E-value=9.9e-06 Score=91.88 Aligned_cols=149 Identities=12% Similarity=0.071 Sum_probs=94.0
Q ss_pred cCCeEEEEcChHHHHHHHHHHHhc-CC-CceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhh----HHHHHh
Q psy3753 710 YKPAVFASSLAAEDMVLTDLILRN-NF-DINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVN----NYIFKN 783 (928)
Q Consensus 710 ~~~~~vs~SGGKDS~vll~L~~~~-~~-~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~----~~~~~~ 783 (928)
+++++|++|||+||+++++++.+. +. ++.++++|+|.. ++-.+.+++.++.+|++++++........ ..+..+
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~~-~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n 80 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQP-EEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKAN 80 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCCC-hHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhC
Confidence 468999999999999999999886 54 899999999853 45567799999999999888654322221 112222
Q ss_pred CC-CCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecc---cccccccCCcceeecCCCCCeEEEEeCcCC--CH
Q psy3753 784 GI-NAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRR---TQSITRSNLVLKEKDIIHNGIIKFNPLYNW--LE 855 (928)
Q Consensus 784 G~-~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~---~ES~~R~~~~~~~~d~~~~~~~~~~PI~dW--t~ 855 (928)
.. ..|+-+ .. .|....-.-+.+..+ +.+++.+|... |+..-|...... +.-.+.|+.+| |.
T Consensus 81 ~~~~gYpl~---~~-~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~~a~-------~l~viaP~re~~ltK 149 (394)
T PRK13820 81 ALYEGYPLG---TA-LARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRAS-------DLEVIAPIRELNLTR 149 (394)
T ss_pred ccccCCcCc---HH-HHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhhHhh-------cCeeeCchhccCCCH
Confidence 21 111111 11 132222233334332 56788888843 333222211111 22246798885 99
Q ss_pred HHHHHHHHHCCCCCC
Q psy3753 856 KDIWNYINTYNVPYN 870 (928)
Q Consensus 856 ~DVw~Yi~~~~lp~n 870 (928)
+|+-+|.++++||+.
T Consensus 150 ~ei~~ya~~~gip~~ 164 (394)
T PRK13820 150 EWEIEYAKEKGIPVP 164 (394)
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999999985
No 96
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.18 E-value=1.1e-05 Score=91.63 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=96.2
Q ss_pred CCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCchhh----hHHHHHhC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLNSEV----NNYIFKNG 784 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~~~~----~~~~~~~G 784 (928)
++++|++|||.||+++++++.+. +.++..+++|+|.. +-.+.++++++.+|+ +.+++.-..... ...+..+.
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~--~dle~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~ 80 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG--EELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA 80 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH--HHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhCh
Confidence 47899999999999999999886 88999999999975 456778889999997 455542221111 12222221
Q ss_pred CC--CCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecc---cccccccCCcceeecCCCCCeEEEEeCcCC---C
Q psy3753 785 IN--AFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRR---TQSITRSNLVLKEKDIIHNGIIKFNPLYNW---L 854 (928)
Q Consensus 785 ~~--~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~---~ES~~R~~~~~~~~d~~~~~~~~~~PI~dW---t 854 (928)
.. .++-+ ...|-... ..-+.+..+ +.+++..|... |++.-|....... +..-.+.|+.+| |
T Consensus 81 ~y~g~ypl~---~~lcr~~i-~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~~g~~al~-----pel~VisPlre~~~~t 151 (399)
T PRK00509 81 LYEGKYPLG---TALARPLI-AKKLVEIARKEGADAVAHGCTGKGNDQVRFELGIAALA-----PDLKVIAPWREWDLKS 151 (399)
T ss_pred HhcCcCCCc---hHHHHHHH-HHHHHHHHHHcCCCEEEeCCCcCCCCHHHHHHHHHHhC-----CCCeeecchhhcCCCC
Confidence 10 11111 11222222 333444442 56788888764 4443333222222 234579999999 9
Q ss_pred HHHHHHHHHHCCCCCCh
Q psy3753 855 EKDIWNYINTYNVPYNT 871 (928)
Q Consensus 855 ~~DVw~Yi~~~~lp~np 871 (928)
.+|+-+|.+++|||+..
T Consensus 152 K~eir~~A~~~Gipv~~ 168 (399)
T PRK00509 152 REELIAYAEEHGIPIPV 168 (399)
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 99999999999999853
No 97
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.16 E-value=1.4e-05 Score=90.70 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=99.2
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcC-------CeEEEEecCch-hhhHHHHH
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYK-------YKIKVYYPLNS-EVNNYIFK 782 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g-------~~i~~~~p~~~-~~~~~~~~ 782 (928)
+++++.+|||+||.|+++|+.+.+.++..+|+|++ ++..+-++++.+.++ +++.++..... .+...+..
T Consensus 181 gkvlvllSGGiDSpVAa~ll~krG~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~~~v~~~i~~ 257 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMMKRGVEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQERERIIQKLKE 257 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHHHcCCeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEChHHHHHHHHHHHH
Confidence 47899999999999999999999999999999988 566777888877665 44555533110 11111111
Q ss_pred hCCCCCccchhhhhhh--hhhcccchHHHhhc--CCcEEEeeeccccccccc--CCcceeecCCCCCeEEEEeCcCCCHH
Q psy3753 783 NGINAFYDSVQMRKKC--CYIRKVKPLKKALI--GNKSWITGQRRTQSITRS--NLVLKEKDIIHNGIIKFNPLYNWLEK 856 (928)
Q Consensus 783 ~G~~~~~~~~~~~~~C--c~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~--~~~~~~~d~~~~~~~~~~PI~dWt~~ 856 (928)
.... ..+| |......-+.+..+ +.++++||.-.+|-..-. ++..+.. ......+.||..++.+
T Consensus 258 ~~~~--------~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~~---~~~lpilRPLi~~dK~ 326 (381)
T PRK08384 258 LKKE--------NYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYIVSQ---ASDLPIYRPLIGMDKE 326 (381)
T ss_pred hccC--------CCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHHHhc---cCCCcEEeeCCCCCHH
Confidence 1111 1123 44433333444332 567899998766532221 1122222 2345689999999999
Q ss_pred HHHHHHHHCC-CCCChhhhcCCCccCcccCC
Q psy3753 857 DIWNYINTYN-VPYNTLYDNGYLSIGCEPCT 886 (928)
Q Consensus 857 DVw~Yi~~~~-lp~npLYd~Gy~riGC~~Ct 886 (928)
||-+|.++.| .+++. ..+ -+|.+.|
T Consensus 327 EIi~~Ar~iGT~~~s~---~~~--~dc~f~p 352 (381)
T PRK08384 327 EIVAIAKTIGTFELST---LPE--DEIPFIP 352 (381)
T ss_pred HHHHHHHHcCCccccc---CCC--CceEEeC
Confidence 9999999999 76553 233 2475655
No 98
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.15 E-value=9.9e-06 Score=92.30 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=92.5
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCCh-HHHHHHHHHHHHHc---CCeEEEEecCchhhhHHHHHhCCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLH-SETLNMLNKIYLTY---KYKIKVYYPLNSEVNNYIFKNGIN 786 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~ef-peT~~~i~~~~~~~---g~~i~~~~p~~~~~~~~~~~~G~~ 786 (928)
+++++++|||+||+|+++++.+.+.++..+|+|++... .+..+.++.+.+.+ +.++..+.-+.............
T Consensus 173 ~kvlvllSGGiDS~vaa~ll~krG~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~~~~~- 251 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMMMKRGCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFTDVQEEIIHIIP- 251 (371)
T ss_pred CeEEEEecCCchHHHHHHHHHHcCCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHHhcCC-
Confidence 57999999999999999999999999999999988544 57778888888877 44333332222222111111111
Q ss_pred CCccchhhhhhhhhhcccchH---HHhh--cCCcEEEeeeccccccc--ccCCcceeecCCCCCeEEEEeCcCCCHHHHH
Q psy3753 787 AFYDSVQMRKKCCYIRKVKPL---KKAL--IGNKSWITGQRRTQSIT--RSNLVLKEKDIIHNGIIKFNPLYNWLEKDIW 859 (928)
Q Consensus 787 ~~~~~~~~~~~Cc~~~K~~Pl---~~~l--~~~~~~i~G~R~~ES~~--R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw 859 (928)
...+|...|..=+ .... .+.+.+++|.-.+|-.. +.++..+.. ..+...++||..|+.+||.
T Consensus 252 --------~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~---~~~~~I~rPLi~~~K~EIi 320 (371)
T TIGR00342 252 --------EGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQA---VSNTPILRPLIGMDKEEII 320 (371)
T ss_pred --------CCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhc---cCCCCEEeCCCCCCHHHHH
Confidence 1224444443111 1222 26789999998887531 222222211 1234467899999999999
Q ss_pred HHHHHCCC
Q psy3753 860 NYINTYNV 867 (928)
Q Consensus 860 ~Yi~~~~l 867 (928)
++.++.|.
T Consensus 321 ~~a~~iG~ 328 (371)
T TIGR00342 321 ELAKEIGT 328 (371)
T ss_pred HHHHHhCC
Confidence 99999994
No 99
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.10 E-value=1.4e-05 Score=90.08 Aligned_cols=151 Identities=13% Similarity=0.046 Sum_probs=96.2
Q ss_pred cCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhH----HHHH--h
Q psy3753 710 YKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNN----YIFK--N 783 (928)
Q Consensus 710 ~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~----~~~~--~ 783 (928)
.++++|++|||+||+|+++++.+.+.++..+++++.. +..+.++++++++|++.+++.-....... ++.. .
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~G~eV~av~~~~~~---~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~ 81 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWG---DEPQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQ 81 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecCcc---hhHHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHc
Confidence 3579999999999999999999998899999998742 33456899999999998877443221111 1111 1
Q ss_pred CCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccc--cccCCcceeecCC----------CCCe--EEE
Q psy3753 784 GINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSI--TRSNLVLKEKDII----------HNGI--IKF 847 (928)
Q Consensus 784 G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~--~R~~~~~~~~d~~----------~~~~--~~~ 847 (928)
|. .+.+ -..|....|..-|.++.+ +.+.+.||.-+.-+. .+..+ ....|.. .+.. -.+
T Consensus 82 G~--tpnp---C~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~~~~~~~l-~~g~D~~kDQsyfl~~l~~~~l~~~i 155 (362)
T PRK14664 82 GR--TPNP---CVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEERNGHIYI-VAGDDDKKDQSYFLWRLGQDILRRCI 155 (362)
T ss_pred CC--CCCC---chhhhHHHHHHHHHHHHHHcCCCEEEECCccccccCCCeEEE-EEcCCCcchHHHHHHhcCHHHHhHHh
Confidence 21 1111 123444567666666664 567888887663221 11100 0000000 0111 258
Q ss_pred EeCcCCCHHHHHHHHHHCCCCC
Q psy3753 848 NPLYNWLEKDIWNYINTYNVPY 869 (928)
Q Consensus 848 ~PI~dWt~~DVw~Yi~~~~lp~ 869 (928)
.||.+++.+||-.|.+++|||.
T Consensus 156 fPLg~~~K~evr~~A~~~gl~~ 177 (362)
T PRK14664 156 FPLGNYTKQTVREYLREKGYEA 177 (362)
T ss_pred ccCccCCHHHHHHHHHHcCCCC
Confidence 9999999999999999999976
No 100
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.10 E-value=2.6e-05 Score=88.01 Aligned_cols=129 Identities=9% Similarity=-0.004 Sum_probs=85.3
Q ss_pred hhhhHHHHHHHHHHHHHhcC---CeEEEEcChHHHHHHHHHHHh-cCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEE
Q psy3753 692 LNSFVKTVLDALNNIVTDYK---PAVFASSLAAEDMVLTDLILR-NNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIK 767 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~~---~~~vs~SGGKDS~vll~L~~~-~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~ 767 (928)
.....+...+.++++.+..+ .++|++||||||+++++++.+ .+.++.++++|++..-+...+.++++.+.+|++.+
T Consensus 38 ~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~ 117 (343)
T TIGR03573 38 WDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLH 117 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 34455555666666554433 389999999999999999854 56677779999999877788899999999999999
Q ss_pred EEecCchhhhHHHHHhCCCCCccchhhhhh-hhhhcccchHHHhhc-CCcEEEeeecccc
Q psy3753 768 VYYPLNSEVNNYIFKNGINAFYDSVQMRKK-CCYIRKVKPLKKALI-GNKSWITGQRRTQ 825 (928)
Q Consensus 768 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~-Cc~~~K~~Pl~~~l~-~~~~~i~G~R~~E 825 (928)
++.++...+....... ..... .+-+ |.......+.+.+.+ +..++++|.-.+|
T Consensus 118 ~i~~d~~~~~~l~~~~-~~~~~----~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE 172 (343)
T TIGR03573 118 TITINPETFRKLQRAY-FKKVG----DPEWPQDHAIFASVYQVALKFNIPLIIWGENIAE 172 (343)
T ss_pred EEeCCHHHHHHHHHHH-HhccC----CCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHH
Confidence 9988765443322111 10000 1112 333333334444443 5778899988885
No 101
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.10 E-value=1.2e-05 Score=91.36 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=92.1
Q ss_pred CCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHHHHHHcCCeE-EEEecCchhhhHHHHHhCCCCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNKIYLTYKYKI-KVYYPLNSEVNNYIFKNGINAF 788 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i-~~~~p~~~~~~~~~~~~G~~~~ 788 (928)
++++|++|||+||+++++++.+. +.++..+++|+|.. .+-.+.+++.++.+|++. +++ .-.. ++...+-.+.+
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq~-~~el~~a~~~A~~lGi~~~~v~-dl~~---ef~~~~i~p~i 80 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQG-IEELEGLEAKAKASGAKQLVVK-DLRE---EFVRDYIFPCL 80 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCCC-hHHHHHHHHHHHHcCCCEEEEE-eCHH---HHHHhhcCHHH
Confidence 58999999999999999999886 77899999999963 456788899999999964 444 2211 11111211111
Q ss_pred ccchhhhhhhhhhccc---chH-----HHhh--cCCcEEEeeec---ccccccccCCcceeecCCCCCeEEEEeCcCCC-
Q psy3753 789 YDSVQMRKKCCYIRKV---KPL-----KKAL--IGNKSWITGQR---RTQSITRSNLVLKEKDIIHNGIIKFNPLYNWL- 854 (928)
Q Consensus 789 ~~~~~~~~~Cc~~~K~---~Pl-----~~~l--~~~~~~i~G~R---~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt- 854 (928)
..-. .... |+.+|. +|+ .+.. .+.+++..|.. .||+.-|....... +..-.+.|+.+|.
T Consensus 81 ~~Na-~ye~-~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf~~~~~al~-----pel~ViaPlre~~~ 153 (404)
T PLN00200 81 RANA-IYEG-KYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFELTFFALN-----PELKVVAPWREWDI 153 (404)
T ss_pred HcCC-cccc-eeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHHHHHHHHhC-----CCCeeeCchhhcCC
Confidence 0000 0011 233333 221 2222 25677777765 34443332222222 2345799999995
Q ss_pred --HHHHHHHHHHCCCCCC
Q psy3753 855 --EKDIWNYINTYNVPYN 870 (928)
Q Consensus 855 --~~DVw~Yi~~~~lp~n 870 (928)
.+|+.+|.+++|||+.
T Consensus 154 ~~r~e~~~~A~~~Gipv~ 171 (404)
T PLN00200 154 KGREDLIEYAKKHNIPVP 171 (404)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 9999999999999864
No 102
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.07 E-value=1.1e-05 Score=84.51 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=84.3
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCc-hhhh--HHHHHhCCCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLN-SEVN--NYIFKNGINA 787 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~-~~~~--~~~~~~G~~~ 787 (928)
+++|.+|||.|||++++++.+.+.++..+++|.|.....-.+.++++.+++|+ +.+++.-+. ..+. .+.. ... .
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~-~~~-~ 78 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSALTD-DSI-E 78 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHH-TT---
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCcccC-CCc-C
Confidence 36899999999999999999999999999999999888888999999999999 777664331 1000 0111 110 0
Q ss_pred Cccchhhhhhhhhhc--ccchHHHhh-----------cCCcEEEeeecccccccc-cCCc-c-------eeecCCCCCeE
Q psy3753 788 FYDSVQMRKKCCYIR--KVKPLKKAL-----------IGNKSWITGQRRTQSITR-SNLV-L-------KEKDIIHNGII 845 (928)
Q Consensus 788 ~~~~~~~~~~Cc~~~--K~~Pl~~~l-----------~~~~~~i~G~R~~ES~~R-~~~~-~-------~~~d~~~~~~~ 845 (928)
.+.. ...-... -.-|.+..+ .+...+++|+-++|...- -..+ + ++... ..++-
T Consensus 79 v~~~----~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~~~~-~~~v~ 153 (209)
T PF06508_consen 79 VPEE----EYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLNLGE-GGPVR 153 (209)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHHHHH-TS--E
T ss_pred Cccc----ccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHHHhcC-CCCEE
Confidence 0000 0000000 112333333 256788999998884211 1111 1 11111 23556
Q ss_pred EEEeCcCCCHHHHHHHHHHCCCCCChhh
Q psy3753 846 KFNPLYNWLEKDIWNYINTYNVPYNTLY 873 (928)
Q Consensus 846 ~~~PI~dWt~~DVw~Yi~~~~lp~npLY 873 (928)
-..|+.+||..||+..-...++|+..-|
T Consensus 154 i~~P~~~~tK~eiv~~~~~lg~~~~~T~ 181 (209)
T PF06508_consen 154 IETPLIDLTKAEIVKLGVELGVPLELTW 181 (209)
T ss_dssp EE-TTTT--HHHHHHHHHHTTHHHHH-B
T ss_pred EEecCCCCCHHHHHHHHHHcCCCHHHcc
Confidence 6999999999999999999997664433
No 103
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.02 E-value=2.3e-05 Score=88.58 Aligned_cols=151 Identities=11% Similarity=0.023 Sum_probs=98.6
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCchhhhHHHH----HhC-
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLNSEVNNYIF----KNG- 784 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~~~~~~~~~----~~G- 784 (928)
++++|+||||-||++++.++.+.+.++..+++|.|....+=.+.+++++..+|+ +..++.-......+++. .+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~ 82 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEG 82 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchh
Confidence 579999999999999999999988899999999998666667888999999998 46666443333223332 111
Q ss_pred -CCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeec---ccccccccCCcceeecCCCCCeEEEEeCcCC-----
Q psy3753 785 -INAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQR---RTQSITRSNLVLKEKDIIHNGIIKFNPLYNW----- 853 (928)
Q Consensus 785 -~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R---~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dW----- 853 (928)
.-.++.+. ..+|. |..-+.+..+ +.+++.+|.. .|+..-|....... ..-.+.|+.+|
T Consensus 83 y~G~yPl~~--~nR~~---~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~------el~ViaPlre~~~~k~ 151 (400)
T PRK04527 83 YQGQYPLLV--SDRYL---IVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAVKALG------DYQIVAPIREIQKEHT 151 (400)
T ss_pred hcCCCCCcc--ccHHH---HHHHHHHHHHHCCCCEEEecCcCCCCchhhccHHHHHhh------cCCccchHHHhcCccc
Confidence 00111111 12333 3334444443 6788999985 33332232222221 22258999999
Q ss_pred -CHHHHHHHHHHCCCCCChh
Q psy3753 854 -LEKDIWNYINTYNVPYNTL 872 (928)
Q Consensus 854 -t~~DVw~Yi~~~~lp~npL 872 (928)
+-+|.-+|.++||+|+..-
T Consensus 152 ~~R~~~i~ya~~~gipv~~~ 171 (400)
T PRK04527 152 QTRAYEQKYLEERGFGVRAK 171 (400)
T ss_pred ccHHHHHHHHHHcCCCCCCC
Confidence 4577799999999999643
No 104
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=97.96 E-value=4.7e-05 Score=87.50 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=90.5
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCC-CChHHHHHHHHHHHHHcC-----CeEEEEecCchhhhHHHHHhC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTG-RLHSETLNMLNKIYLTYK-----YKIKVYYPLNSEVNNYIFKNG 784 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg-~efpeT~~~i~~~~~~~g-----~~i~~~~p~~~~~~~~~~~~G 784 (928)
+++++++|||.||+|+++++.+.+.++..+|+++. +.-+...+.+.++++.++ +++.++.-. .....+...-
T Consensus 177 gkvvvllSGGiDS~vaa~l~~k~G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~--~~~~~i~~~~ 254 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFT--EIQEEIKKKV 254 (394)
T ss_pred CCEEEEECCChhHHHHHHHHHHCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECH--HHHHHHhhcC
Confidence 57999999999999999999999988888888763 344555566666666653 777766422 1111111111
Q ss_pred CCCCccchhhhhhhhhhcccch---HHHhh--cCCcEEEeeecccccc--cccCCcceeecCCCCCeEEEEeCcCCCHHH
Q psy3753 785 INAFYDSVQMRKKCCYIRKVKP---LKKAL--IGNKSWITGQRRTQSI--TRSNLVLKEKDIIHNGIIKFNPLYNWLEKD 857 (928)
Q Consensus 785 ~~~~~~~~~~~~~Cc~~~K~~P---l~~~l--~~~~~~i~G~R~~ES~--~R~~~~~~~~d~~~~~~~~~~PI~dWt~~D 857 (928)
. .+.+|...|..= +.... .+..++++|...+|-. .+..+..+.. ..+...++||..++.+|
T Consensus 255 ~---------~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~~i~~---~~~~~V~rPLig~~K~E 322 (394)
T PRK01565 255 P---------ESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMYAINA---VTNLPVLRPLIGMDKEE 322 (394)
T ss_pred C---------CceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHHHhh---ccCcEEEECCCCCCHHH
Confidence 1 112333333321 12222 2678999998877753 2333322211 12445689999999999
Q ss_pred HHHHHHHCCC
Q psy3753 858 IWNYINTYNV 867 (928)
Q Consensus 858 Vw~Yi~~~~l 867 (928)
|.++-++.|+
T Consensus 323 I~~lAr~iG~ 332 (394)
T PRK01565 323 IIEIAKEIGT 332 (394)
T ss_pred HHHHHHHhCC
Confidence 9999999995
No 105
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.85 E-value=6.5e-05 Score=77.69 Aligned_cols=132 Identities=11% Similarity=0.025 Sum_probs=86.8
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHH------HHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSE------TLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGI 785 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpe------T~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~ 785 (928)
+++++|||||||+++++++.+.+.++..+++++...+.. ..+.++.+++.+|+++.++...... .++.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~-e~~~----- 74 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE-EDEV----- 74 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCc-hHHH-----
Confidence 478999999999999999999988888888876544322 4578888999999998877532211 0100
Q ss_pred CCCccchhhhhhhhhhcccchHHHhh-cCCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHH
Q psy3753 786 NAFYDSVQMRKKCCYIRKVKPLKKAL-IGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINT 864 (928)
Q Consensus 786 ~~~~~~~~~~~~Cc~~~K~~Pl~~~l-~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~ 864 (928)
....-. +.+.. ++...++.|...+|- +|.....+-. .-+..-+.||..-+.+++..=+..
T Consensus 75 ---------~~l~~~------l~~~~~~g~~~vv~G~i~sd~-~~~~~e~~~~---~~gl~~~~PLW~~~~~~ll~e~~~ 135 (194)
T cd01994 75 ---------EDLKEL------LRKLKEEGVDAVVFGAILSEY-QRTRVERVCE---RLGLEPLAPLWGRDQEELLREMIE 135 (194)
T ss_pred ---------HHHHHH------HHHHHHcCCCEEEECccccHH-HHHHHHHHHH---HcCCEEEecccCCCHHHHHHHHHH
Confidence 000000 11111 157789999988886 4443222211 236778999999999988776666
Q ss_pred CCCC
Q psy3753 865 YNVP 868 (928)
Q Consensus 865 ~~lp 868 (928)
.|+.
T Consensus 136 ~g~~ 139 (194)
T cd01994 136 AGFK 139 (194)
T ss_pred cCCe
Confidence 6553
No 106
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=97.84 E-value=5e-05 Score=83.22 Aligned_cols=122 Identities=18% Similarity=0.337 Sum_probs=86.2
Q ss_pred cEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCC
Q psy3753 370 ELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGK 449 (928)
Q Consensus 370 ~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k 449 (928)
+||++-. +-+.+++...++.|+.+|+-..+. +++||| +|....+|.++++.++.+++. +.+. .
T Consensus 236 TIRVSLt------~~p~~EV~va~~IL~al~lR~~g~----~~ISCP---tCGRt~~Dl~~~~~~ie~~l~-~l~~---~ 298 (359)
T PF04551_consen 236 TIRVSLT------GDPVEEVKVAFEILQALGLRKRGP----EIISCP---TCGRTEFDLQELVAEIEERLK-HLKK---G 298 (359)
T ss_dssp EEEE-EC------SSCCCHHHHHHHHHHHTTSS-SS-----EEEE-------TT--SHHHHHHHHHHHHCC-CHHC---G
T ss_pred EEEEECC------CCchHHHHHHHHHHHHhCcCcCCc----eeeeCC---CCCCccchHHHHHHHHHHHHh-cCCC---C
Confidence 6776433 446677899999999999976543 689998 566667889999999999985 3322 7
Q ss_pred eEEEEecCC-CCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHH
Q psy3753 450 ISLNISGCI-NSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVY 520 (928)
Q Consensus 450 ~ki~iSGCp-n~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y 520 (928)
+||+|-||. |+-+...-||+|+.|.. .....||.+|+. +...+|.+++.+.+.++++-|
T Consensus 299 lkIAVMGCiVNGPGEa~~AD~GiaGgg---~g~~~lf~~g~~---------v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 299 LKIAVMGCIVNGPGEAKDADIGIAGGG---KGKGILFKKGEV---------VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp -EEEEESSTCCCHHHCTTSSEEEE-E----TTCEEEECTTEE---------EEEE-CSTCHHHHHHHHHHHH
T ss_pred ceEEEEeeeecCCchhhhCceeeecCC---CCeEEEEECCEE---------EEecCCHHHHHHHHHHHHHhh
Confidence 899999998 99999999999999643 234689998873 222348999999888888754
No 107
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.81 E-value=8.4e-05 Score=87.72 Aligned_cols=144 Identities=14% Similarity=0.132 Sum_probs=91.5
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCCh-HH-HHHHHHHHHHHcC--Ce--EEEEecCchhh-hHHHHHh
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLH-SE-TLNMLNKIYLTYK--YK--IKVYYPLNSEV-NNYIFKN 783 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~ef-pe-T~~~i~~~~~~~g--~~--i~~~~p~~~~~-~~~~~~~ 783 (928)
+++++.+|||+||+|+++++.+.+.++..+|+|.|... .+ ..+..+.+.++|+ .+ +.++. .... .... .
T Consensus 178 gk~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~--~~~~~~~i~-~- 253 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVD--FEPVVGEIL-E- 253 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEe--cHHHHHHHH-h-
Confidence 57899999999999999999999999999999998653 22 4667777777776 34 44442 2221 1111 1
Q ss_pred CCCCCccchhhhhhhhhhcccchH---HHhh--cCCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHH
Q psy3753 784 GINAFYDSVQMRKKCCYIRKVKPL---KKAL--IGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDI 858 (928)
Q Consensus 784 G~~~~~~~~~~~~~Cc~~~K~~Pl---~~~l--~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DV 858 (928)
..+ ...||.+.|..=| ..+. .+.+.++||.-.+|-......+....+. ..+..-..|+..|+.+||
T Consensus 254 ~~~--------~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~~~-~~~~~v~rPLi~~dK~EI 324 (482)
T PRK01269 254 KVD--------DGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLIDN-VTDTLILRPLIAMDKEDI 324 (482)
T ss_pred cCC--------CceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhhhh-hcCCceecCCcCCCHHHH
Confidence 110 1235544443222 1111 2678999999888853322211111111 123445799999999999
Q ss_pred HHHHHHCCC
Q psy3753 859 WNYINTYNV 867 (928)
Q Consensus 859 w~Yi~~~~l 867 (928)
..|-+..|+
T Consensus 325 i~~a~~ig~ 333 (482)
T PRK01269 325 IDLAREIGT 333 (482)
T ss_pred HHHHHHhCC
Confidence 999999997
No 108
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=97.76 E-value=6.7e-05 Score=80.32 Aligned_cols=166 Identities=10% Similarity=0.081 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhcC--CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecC
Q psy3753 697 KTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRNN--FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPL 772 (928)
Q Consensus 697 ~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~~--~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~ 772 (928)
+.....|++.+++. +.+++++|||.||+|++.|+.++. .++..+++++....+++.+.++.+++.+|++..++.-.
T Consensus 3 ~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~ 82 (242)
T PF02540_consen 3 EALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDID 82 (242)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccchH
Confidence 44556666666654 479999999999999999999975 46889999999999999999999999999998877432
Q ss_pred chhhhHHHHHhCCCCCccchhhhhhhh--hhcccchHHHhhcCCcEEEeee-cccccccccCCcceeecCCCCCeEEEEe
Q psy3753 773 NSEVNNYIFKNGINAFYDSVQMRKKCC--YIRKVKPLKKALIGNKSWITGQ-RRTQSITRSNLVLKEKDIIHNGIIKFNP 849 (928)
Q Consensus 773 ~~~~~~~~~~~G~~~~~~~~~~~~~Cc--~~~K~~Pl~~~l~~~~~~i~G~-R~~ES~~R~~~~~~~~d~~~~~~~~~~P 849 (928)
..+..+..... ........++ ...++.-+..+.......+.|. .++|... .++... ..+..-+.|
T Consensus 83 -~~~~~~~~~~~-----~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVlgT~N~sE~~~----Gy~T~~--GD~~~d~~P 150 (242)
T PF02540_consen 83 -PIFDAFLKSLE-----PADDDLARGNIQARIRMTTLYALANKYNYLVLGTGNKSELLL----GYFTKY--GDGAGDIAP 150 (242)
T ss_dssp -HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEBE--CHHHHHH----TCSHTT--TTTSSSBET
T ss_pred -HHHHHHhhhhc-----cchhhhhhhhHHHHHHHHHHHHHhcccceEEecCCcHHHhhc----Cccccc--Cccccccee
Confidence 12222221110 0000001111 1111111111112234455554 2233211 112221 112234899
Q ss_pred CcCCCHHHHHHHHHHCCCCCChhhh
Q psy3753 850 LYNWLEKDIWNYINTYNVPYNTLYD 874 (928)
Q Consensus 850 I~dWt~~DVw~Yi~~~~lp~npLYd 874 (928)
|.+-...+|+...+..++|-.-+..
T Consensus 151 i~~L~K~eV~~la~~l~ip~~ii~k 175 (242)
T PF02540_consen 151 IADLYKTEVRELARYLGIPEEIIEK 175 (242)
T ss_dssp TTTS-HHHHHHHHHHTTCGHHHHCS
T ss_pred eCCcCHHHHHHHHHHHhhHHHHhcC
Confidence 9999999999999999998555443
No 109
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=97.75 E-value=0.0002 Score=74.21 Aligned_cols=157 Identities=14% Similarity=0.149 Sum_probs=102.4
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCCCCcc
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYD 790 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~~~~~ 790 (928)
.+.+|.+|||-||+++++++.+.+..+..+++|-|.-..--++.++++.+++|++.+++.-+. ..+.+.....+
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~------~~~~~~saLtd 76 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDL------LGEIGGSALTD 76 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhH------HhhcCCCcCcC
Confidence 467899999999999999999999999999999998778889999999999999988764321 11121111111
Q ss_pred c---hhhhhhhhhhcc--cchHHHhh-----------cCCcEEEeeecccccccccC-Cc--------ceeecCCCCCeE
Q psy3753 791 S---VQMRKKCCYIRK--VKPLKKAL-----------IGNKSWITGQRRTQSITRSN-LV--------LKEKDIIHNGII 845 (928)
Q Consensus 791 ~---~~~~~~Cc~~~K--~~Pl~~~l-----------~~~~~~i~G~R~~ES~~R~~-~~--------~~~~d~~~~~~~ 845 (928)
+ .......-...+ ..|.+..+ .+...+++|+-..|...--. .+ .++... ..+..
T Consensus 77 ~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~~l~~-~~~~~ 155 (222)
T COG0603 77 DSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGYPDCRPEFIEALNEALNLGT-EKGVR 155 (222)
T ss_pred CCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCCCHHHHHHHHHHHHhhc-cCCcc
Confidence 1 001111000001 12433333 24568899998888744210 10 111111 12333
Q ss_pred -EEEeCcCCCHHHHHHHHHHCCCCCChhhh
Q psy3753 846 -KFNPLYNWLEKDIWNYINTYNVPYNTLYD 874 (928)
Q Consensus 846 -~~~PI~dWt~~DVw~Yi~~~~lp~npLYd 874 (928)
...|+.+++..++|.--.+.++|++.-+.
T Consensus 156 ~i~aPl~~l~Ka~iv~l~~elg~~~~~T~S 185 (222)
T COG0603 156 IIHAPLMELTKAEIVKLADELGVPLELTWS 185 (222)
T ss_pred EEeCCeeeccHHHHHHHHHHhCCcchhceE
Confidence 48999999999999999999998876543
No 110
>PRK00876 nadE NAD synthetase; Reviewed
Probab=97.66 E-value=0.00078 Score=74.89 Aligned_cols=81 Identities=12% Similarity=0.042 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHHHHHHhc---CCeEEEEcChHHHHHHHHHHHhc-C-CCceEEEEcCCCChHHHHHHHHHHHHHcCCeE
Q psy3753 692 LNSFVKTVLDALNNIVTDY---KPAVFASSLAAEDMVLTDLILRN-N-FDINIFTLNTGRLHSETLNMLNKIYLTYKYKI 766 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~---~~~~vs~SGGKDS~vll~L~~~~-~-~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i 766 (928)
.....+...+.|+..+++. +++++..|||.||++++.|+.++ + .++..++++++..-++..++++.+++.+|++.
T Consensus 12 ~~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~ 91 (326)
T PRK00876 12 AAAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGREVAEHLGVEY 91 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHHHHHHcCCCE
Confidence 3445566667777777662 47999999999999999999886 4 35777888887666788899999999999998
Q ss_pred EEEecC
Q psy3753 767 KVYYPL 772 (928)
Q Consensus 767 ~~~~p~ 772 (928)
+++.-.
T Consensus 92 ~~i~i~ 97 (326)
T PRK00876 92 VVEDIT 97 (326)
T ss_pred EEEECc
Confidence 776543
No 111
>PTZ00323 NAD+ synthase; Provisional
Probab=97.62 E-value=0.0012 Score=72.31 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=103.0
Q ss_pred chhhhHHHHHHHHHHHHHh--cCCeEEEEcChHHHHHHHHHHHhcC-C-C---ceEEEEcCCCC-hHHHHHHHHHHHHHc
Q psy3753 691 PLNSFVKTVLDALNNIVTD--YKPAVFASSLAAEDMVLTDLILRNN-F-D---INIFTLNTGRL-HSETLNMLNKIYLTY 762 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~--~~~~~vs~SGGKDS~vll~L~~~~~-~-~---i~vvf~DTg~e-fpeT~~~i~~~~~~~ 762 (928)
.....++.....|+..+++ .+.++|++|||-||++++.|+.++. . + ..++.+..... -+.+.+-++.+.+.+
T Consensus 25 ~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~l 104 (294)
T PTZ00323 25 NPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQAC 104 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556677777788887777 5689999999999999999999964 2 2 34554554433 678999999999999
Q ss_pred CCeEEEEecCchhhhHH---HHHh-CCC--CCccchhh--hhhhhhhcccchHHHhh--cCCcEEEeee-ccccc-cccc
Q psy3753 763 KYKIKVYYPLNSEVNNY---IFKN-GIN--AFYDSVQM--RKKCCYIRKVKPLKKAL--IGNKSWITGQ-RRTQS-ITRS 830 (928)
Q Consensus 763 g~~i~~~~p~~~~~~~~---~~~~-G~~--~~~~~~~~--~~~Cc~~~K~~Pl~~~l--~~~~~~i~G~-R~~ES-~~R~ 830 (928)
|++.+++.-.... ..+ +... +.. .+...... .|..+. .-+.... .+....+.|+ .++|- .-
T Consensus 105 Gi~~~~idi~~l~-~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~l----Y~la~~~~~~g~~~lV~GT~N~sE~~~~-- 177 (294)
T PTZ00323 105 GATEVTVDQTEIH-TQLSSLVEKAVGIKGGAFARGQLRSYMRTPVA----FYVAQLLSQEGTPAVVMGTGNFDEDGYL-- 177 (294)
T ss_pred CCcEEEEECcHHH-HHHHHHHhhhhcccchhhHHHhHHHHHHhHHH----HHHHHHHhhcCCCeEEECCCCchhhhHh--
Confidence 9998777443221 111 1100 100 00000000 011111 0022212 1445788898 77773 22
Q ss_pred CCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCC
Q psy3753 831 NLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVP 868 (928)
Q Consensus 831 ~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp 868 (928)
. +.... ..+..-+.||.+++..||....+..++|
T Consensus 178 G--y~t~~--GDg~~d~~pia~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 178 G--YFCKA--GDGVVDVQLISDLHKSEVFLVARELGVP 211 (294)
T ss_pred c--hHhhc--CCCCcCchhhcCCcHHHHHHHHHHcCCC
Confidence 1 11111 2356679999999999999999999886
No 112
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=97.55 E-value=0.00051 Score=77.18 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=89.8
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCC---------hHHHHHHHHHHHHHcCCeEEEEecCchh----hhH
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRL---------HSETLNMLNKIYLTYKYKIKVYYPLNSE----VNN 778 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~e---------fpeT~~~i~~~~~~~g~~i~~~~p~~~~----~~~ 778 (928)
+++|+.|||-||+|.+.|+.+.+-++.-+|+.+... .++-.+.++++++++|++++++.-.... +..
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~ 81 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEP 81 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHH
T ss_pred eEEEEccCCHHHHHHHHHHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHH
Confidence 589999999999999999999999998888877654 2456788999999999999887443221 112
Q ss_pred HHHHhCCCCCccchhhhhhhhhhcccchHHHhhcC---CcEEEeee--ccccc--ccccCCcceeecCCCC---------
Q psy3753 779 YIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIG---NKSWITGQ--RRTQS--ITRSNLVLKEKDIIHN--------- 842 (928)
Q Consensus 779 ~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~---~~~~i~G~--R~~ES--~~R~~~~~~~~d~~~~--------- 842 (928)
++..|..=.-+.+ --.|....|...|.++.+. .+.+.||. |.... ..+..+.. ..|....
T Consensus 82 f~~~Y~~G~TPNP---cv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r-~~D~~KDQSYfL~~l~ 157 (356)
T PF03054_consen 82 FLDEYRKGRTPNP---CVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLR-GADPKKDQSYFLSRLP 157 (356)
T ss_dssp HHHHHHTT----H---HHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE--SSTTC--GGGGTT--
T ss_pred HHHHHhcCCCCCh---HHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEe-cCCCCCCceEEEEecC
Confidence 2333321011111 2457777999988888754 67788883 22222 23322100 0111000
Q ss_pred -C--eEEEEeCcCCCHHHHHHHHHHCCCC
Q psy3753 843 -G--IIKFNPLYNWLEKDIWNYINTYNVP 868 (928)
Q Consensus 843 -~--~~~~~PI~dWt~~DVw~Yi~~~~lp 868 (928)
. .-.+-||-+++.++|-...++.+||
T Consensus 158 ~~~L~~~~FPLG~~~K~eVR~iA~~~gl~ 186 (356)
T PF03054_consen 158 QEQLSRLIFPLGELTKEEVREIAREAGLP 186 (356)
T ss_dssp HHHHCCEE-TCCCS-HHHHHHHHHHCT-T
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHhcCCc
Confidence 0 1258999999999999999999998
No 113
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=97.55 E-value=0.00027 Score=76.79 Aligned_cols=117 Identities=17% Similarity=0.326 Sum_probs=87.5
Q ss_pred cEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCC
Q psy3753 370 ELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGK 449 (928)
Q Consensus 370 ~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k 449 (928)
+||++=. +-+.+++...++.|+.+||...+. ++++||.-++|+ +|...++.++++++. +.+. .
T Consensus 227 TIRVSLT------~dP~~EV~va~~IL~slglr~~g~----~iiSCPtCGR~~---~dl~~~~~~ve~~l~-~~~~---~ 289 (346)
T TIGR00612 227 TIRVSLT------DDPTHEVPVAFEILQSLGLRARGV----EIVACPSCGRTG---FDVEKVVRRVQEALF-HLKT---P 289 (346)
T ss_pred eEEEECC------CCcHHHHHHHHHHHHHcCCCcCCC----eEEECCCCCCcC---CCHHHHHHHHHHHHh-cCCC---C
Confidence 6776533 335788889999999999976553 699998655555 777889999999986 2222 6
Q ss_pred eEEEEecCC-CCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHH
Q psy3753 450 ISLNISGCI-NSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRI 516 (928)
Q Consensus 450 ~ki~iSGCp-n~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l 516 (928)
+||+|-||. |+-+.+..||||+.|.. .....||.+|+.- ..++.+++.+.+...
T Consensus 290 l~VAVMGCvVNGPGEak~ADiGIaggg---~g~~~lF~~G~~~----------~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 290 LKVAVMGCVVNGPGEAKHADIGISGGG---TGSAILFKRGKPK----------AKQPETDMADELIRL 344 (346)
T ss_pred CEEEEECceecCCchhhccCeeeecCC---CCceEEEECCEEe----------EecCHHHHHHHHHHh
Confidence 899999998 99999999999999941 2346788888732 147888777765543
No 114
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.52 E-value=0.00018 Score=66.49 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=38.6
Q ss_pred eEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCC--hHHHHHHHHH
Q psy3753 713 AVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRL--HSETLNMLNK 757 (928)
Q Consensus 713 ~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~e--fpeT~~~i~~ 757 (928)
++|++|||+||+++++++.+.+.++.++++|.+.+ .++..+++++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGISPRLEDAKEIAKE 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCCCEEEEEEcCCCcccHHHHHHHHHH
Confidence 47999999999999999999988999999999986 5666666555
No 115
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=97.51 E-value=0.00063 Score=73.49 Aligned_cols=127 Identities=15% Similarity=0.318 Sum_probs=97.4
Q ss_pred cEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCC
Q psy3753 370 ELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGK 449 (928)
Q Consensus 370 ~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k 449 (928)
+||++=. +-+.+++.-..+.|+.+|+...+ -+++||| +|....+|....+.++.+++. ... .+
T Consensus 229 TIRVSLt------~~P~~EV~V~~eILqslglR~~~----v~~iaCP---~CGR~~~dv~~~~~~~~~~~~-~~~---~p 291 (361)
T COG0821 229 TIRVSLT------ADPVEEVKVAQEILQSLGLRSRG----VEVIACP---TCGRTEFDVIQTLNEVEQRLE-HLK---TP 291 (361)
T ss_pred eEEEecC------CCchhhhHHHHHHHHHhCccccC----ceEEECC---CCCceeehHHHHHHHHHHHhh-ccC---CC
Confidence 6666433 33478888889999999987544 3689998 688888999999999999986 222 26
Q ss_pred eEEEEecCC-CCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhccc
Q psy3753 450 ISLNISGCI-NSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYL 526 (928)
Q Consensus 450 ~ki~iSGCp-n~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~ 526 (928)
++|+|-||- |+-+.+..+|||+.|.. ...-.+|++|+.- ..++.+++.+-+.++++-|.+++.+
T Consensus 292 l~VAVMGCVVNGPGEak~AdiGia~~~---~~~~~~f~~g~~~----------~~~~~~~~~eel~~~i~~~~~~~~~ 356 (361)
T COG0821 292 LKVAVMGCVVNGPGEAKHADIGIAGGG---KGSGPVFVKGEII----------KKLPEEDIVEELEALIEAYAEERDG 356 (361)
T ss_pred ceEEEEEeEecCCcchhccceeeecCC---CCeeEEEECCeEE----------EecChhhHHHHHHHHHHHHHHHhhh
Confidence 899999998 99999999999999953 2345788888732 1367888888888888877766544
No 116
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.0011 Score=73.55 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=105.0
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCC-------ChHHHHHHHHHHHHHcCCeEEEEecCchhh----hHH
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGR-------LHSETLNMLNKIYLTYKYKIKVYYPLNSEV----NNY 779 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~-------efpeT~~~i~~~~~~~g~~i~~~~p~~~~~----~~~ 779 (928)
.+++|++|||-||+|.+.|+.+.+.+|.-+|+.+.. ..++=++.++++++++|++++++.-..... ..+
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f 83 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYF 83 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHH
Confidence 478999999999999999999999999988886655 344566778999999999999874433221 223
Q ss_pred HHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeee--cccccccccCCcceeecCCCCCe-----------
Q psy3753 780 IFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQ--RRTQSITRSNLVLKEKDIIHNGI----------- 844 (928)
Q Consensus 780 ~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~--R~~ES~~R~~~~~~~~d~~~~~~----------- 844 (928)
+.+|+.=..+.+ --.|....|-..+.++++ +.+.+.||. |..++.++..+. ...|....+.
T Consensus 84 ~~~Y~~G~TPNP---ci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~-r~~D~~KDQsYfL~~~~~~ql 159 (356)
T COG0482 84 LAEYKAGKTPNP---CILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLL-RGVDLNKDQSYFLYALSQEQL 159 (356)
T ss_pred HHHHhCCCCCCc---chhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccc-cCCCcccchhheecccCHHHH
Confidence 444432111111 134768899888777775 467788883 333332222110 0111111111
Q ss_pred -EEEEeCcCCCHHHHHHHHHHCCCCCChhh
Q psy3753 845 -IKFNPLYNWLEKDIWNYINTYNVPYNTLY 873 (928)
Q Consensus 845 -~~~~PI~dWt~~DVw~Yi~~~~lp~npLY 873 (928)
..+-||-+++..+|-.--.+.+||...-=
T Consensus 160 ~~~lFPlG~l~K~evR~iA~~~gL~~a~Kk 189 (356)
T COG0482 160 ERLLFPLGDLEKLEVRPIAAEKGLPTAKKK 189 (356)
T ss_pred hhccccCCCCCHHHHHHHHHHcCCCccCcc
Confidence 13789999999999999999999875543
No 117
>PRK00768 nadE NAD synthetase; Reviewed
Probab=97.36 E-value=0.0027 Score=68.52 Aligned_cols=170 Identities=8% Similarity=0.020 Sum_probs=93.9
Q ss_pred chhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhcCC---------CceEEEEcCCCChHHHHHHHHHHH
Q psy3753 691 PLNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRNNF---------DINIFTLNTGRLHSETLNMLNKIY 759 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~~~---------~i~vvf~DTg~efpeT~~~i~~~~ 759 (928)
..+...+...+.|+..+++. ..++|..|||.||+|++.|+.++.. .+.++.+=.....+++.+.++.++
T Consensus 17 ~~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la 96 (268)
T PRK00768 17 DPEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDAL 96 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHH
Confidence 34455566667777777765 4799999999999999999887532 233555444445567788999999
Q ss_pred HHcCC-eEEEEecCchhhhHHHHHhCCCCCcc-chhhhhhhhhhcccchHHHhhcCCcEEEeee-cccccccccCCccee
Q psy3753 760 LTYKY-KIKVYYPLNSEVNNYIFKNGINAFYD-SVQMRKKCCYIRKVKPLKKALIGNKSWITGQ-RRTQSITRSNLVLKE 836 (928)
Q Consensus 760 ~~~g~-~i~~~~p~~~~~~~~~~~~G~~~~~~-~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~-R~~ES~~R~~~~~~~ 836 (928)
+.+|+ +..++. ....+..+........... .... ..-.....+.-+..+.......+.|. .++|.. .-++.
T Consensus 97 ~~lgi~~~~~i~-I~~~~~~~~~~l~~~~~~~~~~a~-~NiqARlRm~~Ly~~An~~~~lvlgT~N~sE~~----~Gy~T 170 (268)
T PRK00768 97 AFIQPDRVLTVN-IKPAVDASVAALEAAGIELSDFVK-GNIKARERMIAQYAIAGATGGLVVGTDHAAEAV----TGFFT 170 (268)
T ss_pred HhcCCCeeEEEE-CHHHHHHHHHHHhhcCCCchhhHH-HHHHHHHHHHHHHHHHccCCCEEEcCCcccHHH----hCcee
Confidence 99998 655542 2222222221111000100 0000 00000000111111112233344443 233332 12222
Q ss_pred ecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCC
Q psy3753 837 KDIIHNGIIKFNPLYNWLEKDIWNYINTYNVP 868 (928)
Q Consensus 837 ~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp 868 (928)
.. ..+..-++||.+++..+|+...+..++|
T Consensus 171 ky--GD~~~d~~pi~~L~KteV~~La~~l~vP 200 (268)
T PRK00768 171 KF--GDGGADILPLFGLNKRQGRALLAALGAP 200 (268)
T ss_pred cc--CCccccchhhcCCcHHHHHHHHHHhCCC
Confidence 21 1234569999999999999999999987
No 118
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.32 E-value=0.0009 Score=70.64 Aligned_cols=129 Identities=10% Similarity=0.090 Sum_probs=81.1
Q ss_pred EEEEcChHHHHHHHHHHHhcCCCce-EEEEcCCC------ChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCC
Q psy3753 714 VFASSLAAEDMVLTDLILRNNFDIN-IFTLNTGR------LHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGIN 786 (928)
Q Consensus 714 ~vs~SGGKDS~vll~L~~~~~~~i~-vvf~DTg~------efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~ 786 (928)
+++|||||||+++++++.+.+.++. ++++++.. +-+ -.+.++..++.+|+++.++.-..... .
T Consensus 1 ~vl~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~-~~~~~~~~A~~lgip~~~i~~~~~~~-~-------- 70 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEEGHEVRCLITVVPENEESYMFHTP-NIELTRLQAEALGIPLVKIETSGEKE-K-------- 70 (218)
T ss_pred CeeecCcHHHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCC-CHHHHHHHHHHhCCCEEEEECCCCCh-H--------
Confidence 3689999999999999999887774 55665431 222 34778889999999987765331100 0
Q ss_pred CCccchhhhhhhhhhcccchHHHhh-cCCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHC
Q psy3753 787 AFYDSVQMRKKCCYIRKVKPLKKAL-IGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTY 865 (928)
Q Consensus 787 ~~~~~~~~~~~Cc~~~K~~Pl~~~l-~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~ 865 (928)
. ... +. .-+.++. .+.+.++.|.-.++- .|.....+.. ..+..-+.||..|+.++++.=+...
T Consensus 71 ----~--~~~----l~--~~l~~~~~~g~~~vv~G~i~sd~-~~~~~e~v~~---~~gl~~~~PLw~~~~~el~~~~~~~ 134 (218)
T TIGR03679 71 ----E--VED----LK--GALKELKREGVEGIVTGAIASRY-QKSRIERICE---ELGLKVFAPLWGRDQEEYLRELVER 134 (218)
T ss_pred ----H--HHH----HH--HHHHHHHHcCCCEEEECCcccHh-HHHHHHHHHH---hCCCeEEeehhcCCHHHHHHHHHHC
Confidence 0 000 00 0011111 267788999877653 3332222221 3467789999999999999888776
Q ss_pred CCC
Q psy3753 866 NVP 868 (928)
Q Consensus 866 ~lp 868 (928)
|+.
T Consensus 135 G~~ 137 (218)
T TIGR03679 135 GFR 137 (218)
T ss_pred CCE
Confidence 653
No 119
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=97.15 E-value=0.00098 Score=73.29 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=81.7
Q ss_pred EcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEe
Q psy3753 93 FNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISG 172 (928)
Q Consensus 93 l~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsg 172 (928)
|.+-+.+.+....+-|+++||...+ -++++||..| ...+|...++.++.+++. +++..+||||=|
T Consensus 241 Lt~~p~~EV~va~~IL~al~lR~~g------~~~ISCPtCG---Rt~~Dl~~~~~~ie~~l~------~l~~~lkIAVMG 305 (359)
T PF04551_consen 241 LTGDPVEEVKVAFEILQALGLRKRG------PEIISCPTCG---RTEFDLQELVAEIEERLK------HLKKGLKIAVMG 305 (359)
T ss_dssp ECSSCCCHHHHHHHHHHHTTSS-SS-------EEEE----T---T--SHHHHHHHHHHHHCC------CHHCG-EEEEES
T ss_pred CCCCchHHHHHHHHHHHHhCcCcCC------ceeeeCCCCC---CccchHHHHHHHHHHHHh------cCCCCceEEEEe
Confidence 4455666788888999999997543 4799999655 557899999999998874 466789999999
Q ss_pred cC-CCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHH
Q psy3753 173 SQ-EDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIY 237 (928)
Q Consensus 173 c~-~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~ 237 (928)
|. |.-..+.-+|+|+.+...+ ...+|.+|. .+...++++++++.+..+++-|
T Consensus 306 CiVNGPGEa~~AD~GiaGgg~g----~~~lf~~g~---------~v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 306 CIVNGPGEAKDADIGIAGGGKG----KGILFKKGE---------VVKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp STCCCHHHCTTSSEEEE-E-TT----CEEEECTTE---------EEEEE-CSTCHHHHHHHHHHHH
T ss_pred eeecCCchhhhCceeeecCCCC----eEEEEECCE---------EEEecCCHHHHHHHHHHHHHhh
Confidence 97 6677788999999964441 467888875 2333458999999888887644
No 120
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0014 Score=63.41 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=89.3
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhh---hHHHHHhCCCCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEV---NNYIFKNGINAF 788 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~---~~~~~~~G~~~~ 788 (928)
.+.+.|||||||+....++.+.+.++..|.++.|..- +..++++.++.+|++-+++.-+..-. .+++-+.|.|.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d--~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg~P~- 78 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVLD--SWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDGYPR- 78 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCCCcEEEEEEecccc--chhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcCCCc-
Confidence 4678999999999999999999999999999888753 56889999999999988876544332 24455566433
Q ss_pred ccchhhhhhhhhhcccchHHHhh-cCCcEEEeeecccccc---cccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHH
Q psy3753 789 YDSVQMRKKCCYIRKVKPLKKAL-IGNKSWITGQRRTQSI---TRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYIN 863 (928)
Q Consensus 789 ~~~~~~~~~Cc~~~K~~Pl~~~l-~~~~~~i~G~R~~ES~---~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~ 863 (928)
. .- .++.++ .+.-.. +.++.+..|+|+|+-- .|+..-.++- .-++-.++||.-.-+.-|-....
T Consensus 79 --~---aI--q~iH~~-alE~~A~r~~~~iaDGTRRDDrvP~ls~~~~qSLEd---R~nv~Yi~PL~G~G~kti~~Lv~ 146 (198)
T COG2117 79 --N---AI--QYIHEM-ALEALASREVDRIADGTRRDDRVPKLSRSEAQSLED---RLNVQYIRPLLGLGYKTIRRLVS 146 (198)
T ss_pred --h---HH--HHHHHH-HHHHHHHHHHHHHcCCCcccccCccccHHHHhhHHH---hcCceeecccccccHHHHHHHHH
Confidence 1 11 111111 111111 2467778899999852 2222111111 23556789998887777665443
No 121
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.13 E-value=0.0023 Score=65.96 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=74.8
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCC-ChHHHHHHHHHHHHH---cC--CeEEEEecCchhhhHHHHHhC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGR-LHSETLNMLNKIYLT---YK--YKIKVYYPLNSEVNNYIFKNG 784 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~-efpeT~~~i~~~~~~---~g--~~i~~~~p~~~~~~~~~~~~G 784 (928)
+++++.+|||.||.|..+++.+.|.++..+|+++.. .-+.+.+.++++.+. |+ .++..+..+.......+....
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~krG~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKRGCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCBT-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred ceEEEEecCCccHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 468889999999999999999999999999998542 233344444554443 43 355554444443322222222
Q ss_pred CCCCccchhhhhhhhhhcccchHH---Hhhc--CCcEEEeeecccc--cccccCCcceeecCCCCCeEEEEeCcCCCHHH
Q psy3753 785 INAFYDSVQMRKKCCYIRKVKPLK---KALI--GNKSWITGQRRTQ--SITRSNLVLKEKDIIHNGIIKFNPLYNWLEKD 857 (928)
Q Consensus 785 ~~~~~~~~~~~~~Cc~~~K~~Pl~---~~l~--~~~~~i~G~R~~E--S~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~D 857 (928)
. ..+.|-.+|..=++ +.++ +...++||---.| |....++..++.. -+...++||..+..+|
T Consensus 84 ~---------~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL~~i~~~---~~~pIlRPLig~dK~E 151 (197)
T PF02568_consen 84 K---------ERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENLRVIESA---SDLPILRPLIGFDKEE 151 (197)
T ss_dssp ----------GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHHHHHGGG-----S-EE-TTTT--HHH
T ss_pred C---------ccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHHhhhhcc---cCCceeCCcCCCCHHH
Confidence 1 12234334432222 2222 5667777632222 2222333344332 2557899999999999
Q ss_pred HHHHHHHCCC
Q psy3753 858 IWNYINTYNV 867 (928)
Q Consensus 858 Vw~Yi~~~~l 867 (928)
|-+..++-|.
T Consensus 152 Ii~~Ar~Igt 161 (197)
T PF02568_consen 152 IIEIARKIGT 161 (197)
T ss_dssp HHHHHHHTT-
T ss_pred HHHHHHHhCc
Confidence 9999999987
No 122
>KOG2805|consensus
Probab=96.99 E-value=0.01 Score=63.56 Aligned_cols=157 Identities=12% Similarity=0.121 Sum_probs=98.9
Q ss_pred hcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcC-------CCC--hHHHHHHHHHHHHHcCCeEEEEecCchh----
Q psy3753 709 DYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNT-------GRL--HSETLNMLNKIYLTYKYKIKVYYPLNSE---- 775 (928)
Q Consensus 709 ~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DT-------g~e--fpeT~~~i~~~~~~~g~~i~~~~p~~~~---- 775 (928)
..++++|+.|||-||.|.++|+++.+.++.-||+-. |.+ ...-.+.+++++++++++++.++-...-
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~V 83 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDV 83 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHhcCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHH
Confidence 346899999999999999999999999999888732 212 2235577899999999999988554322
Q ss_pred hhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc---CCcEEEeeecccccccccCC----cceeecCCCCCeE---
Q psy3753 776 VNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI---GNKSWITGQRRTQSITRSNL----VLKEKDIIHNGII--- 845 (928)
Q Consensus 776 ~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~---~~~~~i~G~R~~ES~~R~~~----~~~~~d~~~~~~~--- 845 (928)
+..++..|-.-.-+.+ .--|....|-..+.+... +.+.+.+|.=+--+..=... -.++.|....+.+
T Consensus 84 fs~~L~~Y~~G~TPNP---DI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~d~~KDQt~FL~ 160 (377)
T KOG2805|consen 84 FSPFLEEYENGRTPNP---DILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISKDMVKDQTYFLS 160 (377)
T ss_pred HHHHHHHHhcCCCCCC---CccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEeecccccCCceeEee
Confidence 1123333321111111 134777788775555553 56777777543222111110 0111121111111
Q ss_pred ---------EEEeCcCCCHHHHHHHHHHCCCC
Q psy3753 846 ---------KFNPLYNWLEKDIWNYINTYNVP 868 (928)
Q Consensus 846 ---------~~~PI~dWt~~DVw~Yi~~~~lp 868 (928)
...||-+|+..+|-...++.|+|
T Consensus 161 ~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~ 192 (377)
T KOG2805|consen 161 TINQTQLKRLLFPLGCLTKSEVKKLAKQAGFP 192 (377)
T ss_pred cccHHHHHhhhccCcccCHHHHHHHHHhcCCc
Confidence 36799999999999999999998
No 123
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=96.82 E-value=0.0049 Score=67.29 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=83.0
Q ss_pred ccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecC
Q psy3753 95 WIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQ 174 (928)
Q Consensus 95 gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~ 174 (928)
+-+.+.+....+-|+++||...+ -++++||..|.| .+|...++.++.+++. .++..+||||=||.
T Consensus 234 ~dP~~EV~va~~IL~slglr~~g------~~iiSCPtCGR~---~~dl~~~~~~ve~~l~------~~~~~l~VAVMGCv 298 (346)
T TIGR00612 234 DDPTHEVPVAFEILQSLGLRARG------VEIVACPSCGRT---GFDVEKVVRRVQEALF------HLKTPLKVAVMGCV 298 (346)
T ss_pred CCcHHHHHHHHHHHHHcCCCcCC------CeEEECCCCCCc---CCCHHHHHHHHHHHHh------cCCCCCEEEEECce
Confidence 44566778888999999997543 579999976655 4788899999998874 35556999999997
Q ss_pred -CCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHH
Q psy3753 175 -EDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAI 233 (928)
Q Consensus 175 -~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai 233 (928)
|.-..+.-+|||+.+...+ ...||..|.. ...++.+++++.+...
T Consensus 299 VNGPGEak~ADiGIaggg~g----~~~lF~~G~~----------~~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 299 VNGPGEAKHADIGISGGGTG----SAILFKRGKP----------KAKQPETDMADELIRL 344 (346)
T ss_pred ecCCchhhccCeeeecCCCC----ceEEEECCEE----------eEecCHHHHHHHHHHh
Confidence 6677888999999985221 4567877753 1357888888876554
No 124
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=96.78 E-value=0.0049 Score=67.09 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcCCC-ceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhh
Q psy3753 702 ALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFD-INIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEV 776 (928)
Q Consensus 702 ~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~~~-i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~ 776 (928)
.++..+....++.+.+|||.||++++.++.+...+ +..+.++.+....+-.++++.+.+++|++.+++......+
T Consensus 7 av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~~~~ 82 (269)
T cd01991 7 AVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFTPADL 82 (269)
T ss_pred HHHHHhccCCceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcCHHHH
Confidence 33333444568999999999999999999987654 7777777665433337899999999999988877654443
No 125
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0049 Score=65.18 Aligned_cols=173 Identities=13% Similarity=0.153 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHh-cCCCceEEEEcCCCC-hHHHHHHHHHHHHHcCCeEEEEe
Q psy3753 693 NSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILR-NNFDINIFTLNTGRL-HSETLNMLNKIYLTYKYKIKVYY 770 (928)
Q Consensus 693 ~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~-~~~~i~vvf~DTg~e-fpeT~~~i~~~~~~~g~~i~~~~ 770 (928)
...++.+++.|++... -++++++.|||-||+|+.-|+.+ .+.++.++|+|||.. --|..+..+.+.+++|+|+..+.
T Consensus 5 ~~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~~Vd 83 (315)
T COG0519 5 ENFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLIVVD 83 (315)
T ss_pred HHHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHhhcCCceEEEc
Confidence 4556666666666655 35899999999999999999988 478899999999963 34555666667788999999885
Q ss_pred cCchhhhHHHHH-hCCCCCccchhhhhhhhhhcccchHHHhhcC--CcEEEeeecc---cccccccCCcceeecCCC---
Q psy3753 771 PLNSEVNNYIFK-NGINAFYDSVQMRKKCCYIRKVKPLKKALIG--NKSWITGQRR---TQSITRSNLVLKEKDIIH--- 841 (928)
Q Consensus 771 p~~~~~~~~~~~-~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~--~~~~i~G~R~---~ES~~R~~~~~~~~d~~~--- 841 (928)
... .|+.+ .| ..++.. .|+--...=++-+.+..+. ....+-|+=. -||.......+-+. .+-
T Consensus 84 A~~----~Fl~~L~G---vtDPE~-KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~~g~~~~IKSH-HNVGGL 154 (315)
T COG0519 84 AKD----RFLSALKG---VTDPEE-KRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESGTGKAGTIKSH-HNVGGL 154 (315)
T ss_pred hHH----HHHHHhcC---CCCHHH-HHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeecCCCCCccccc-cccCCC
Confidence 432 22222 23 233322 1111111111122222211 1111122111 14442222111111 111
Q ss_pred CC---eEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 842 NG---IIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 842 ~~---~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
+. .--+-||-+.-..+|-..=+.-|||..-+|.+
T Consensus 155 P~~m~lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~Rh 191 (315)
T COG0519 155 PEDMKLKLVEPLRELFKDEVRELGRELGLPEEIVYRH 191 (315)
T ss_pred ccccceeeeHHHHHHhHHHHHHHHHHhCCCHHHhccC
Confidence 11 22377888888888888888888888777776
No 126
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=96.65 E-value=0.014 Score=63.36 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=90.1
Q ss_pred ccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecC
Q psy3753 95 WIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQ 174 (928)
Q Consensus 95 gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~ 174 (928)
+-+.+.+.-..+-|++.||...+ -|+++||+ |....+|+...+.++.+.+. .++..+||+|=||-
T Consensus 236 ~~P~~EV~V~~eILqslglR~~~------v~~iaCP~---CGR~~~dv~~~~~~~~~~~~------~~~~pl~VAVMGCV 300 (361)
T COG0821 236 ADPVEEVKVAQEILQSLGLRSRG------VEVIACPT---CGRTEFDVIQTLNEVEQRLE------HLKTPLKVAVMGCV 300 (361)
T ss_pred CCchhhhHHHHHHHHHhCccccC------ceEEECCC---CCceeehHHHHHHHHHHHhh------ccCCCceEEEEEeE
Confidence 33456666777788899997653 68999995 66788999999999998874 34556999999996
Q ss_pred -CCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcCC
Q psy3753 175 -EDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRR 243 (928)
Q Consensus 175 -~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r 243 (928)
|.-..+.-+|||+.+...+ .-.+|.+|..- ..++.+++++-+.++++-|.+....
T Consensus 301 VNGPGEak~AdiGia~~~~~----~~~~f~~g~~~----------~~~~~~~~~eel~~~i~~~~~~~~~ 356 (361)
T COG0821 301 VNGPGEAKHADIGIAGGGKG----SGPVFVKGEII----------KKLPEEDIVEELEALIEAYAEERDG 356 (361)
T ss_pred ecCCcchhccceeeecCCCC----eeEEEECCeEE----------EecChhhHHHHHHHHHHHHHHHhhh
Confidence 6677888999999986331 23577777521 3478889999998888887766544
No 127
>PRK13981 NAD synthetase; Provisional
Probab=96.63 E-value=0.025 Score=68.23 Aligned_cols=167 Identities=7% Similarity=-0.023 Sum_probs=97.7
Q ss_pred hhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhc-CC-CceEEEEcCCCChHHHHHHHHHHHHHcCCeEE
Q psy3753 692 LNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRN-NF-DINIFTLNTGRLHSETLNMLNKIYLTYKYKIK 767 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~-~~-~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~ 767 (928)
.....+.....|++.+++. +.++|++|||.||++++.|+.+. ++ ++..+++.+...-+++++-++.+++.+|++.+
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~ 339 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGVRYD 339 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 4555666667777777665 57999999999999999999886 53 58888998887888899999999999999877
Q ss_pred EEecCchhhhHHHHHhCCCCCccchhhhhhhh--hhcccchHHHhhcCCcEEEeee-cccccccccCCcceeecCCCCCe
Q psy3753 768 VYYPLNSEVNNYIFKNGINAFYDSVQMRKKCC--YIRKVKPLKKALIGNKSWITGQ-RRTQSITRSNLVLKEKDIIHNGI 844 (928)
Q Consensus 768 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc--~~~K~~Pl~~~l~~~~~~i~G~-R~~ES~~R~~~~~~~~d~~~~~~ 844 (928)
++.-. ..+..+....+. .+.....+...+. ...+..-+..+.......++|+ .++|-.- -+.... ..+.
T Consensus 340 ~i~i~-~~~~~~~~~~~~-~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~sE~~~----Gy~t~~--GD~~ 411 (540)
T PRK13981 340 IIPIE-PAFEAFEAALAP-LFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEMAV----GYATLY--GDMA 411 (540)
T ss_pred EEECH-HHHHHHHHHhhh-hhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCccCHHHc----CCeEec--CCcc
Confidence 65322 212222111110 0000000001111 0111111222222333344443 1233321 122222 1233
Q ss_pred EEEEeCcCCCHHHHHHHHHHCC
Q psy3753 845 IKFNPLYNWLEKDIWNYINTYN 866 (928)
Q Consensus 845 ~~~~PI~dWt~~DVw~Yi~~~~ 866 (928)
.-++||.|-...+|+...+..+
T Consensus 412 ~~~~pi~~l~K~~v~~la~~~~ 433 (540)
T PRK13981 412 GGFAPIKDVYKTLVYRLCRWRN 433 (540)
T ss_pred cCccccCCCCHHHHHHHHHHHH
Confidence 4699999999999999888765
No 128
>PRK05370 argininosuccinate synthase; Validated
Probab=96.57 E-value=0.014 Score=66.49 Aligned_cols=153 Identities=11% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCchhhhHHHH---HhCCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLNSEVNNYIF---KNGIN 786 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~~~~~~~~~---~~G~~ 786 (928)
++++++||||-|++|++..+.+.+-+|..+.+|+|..-.+-.+-+++-+..+|. ++.++.-....+.+++. -+...
T Consensus 12 ~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI~anA~Y 91 (447)
T PRK05370 12 QRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAIQCGAFH 91 (447)
T ss_pred CEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHHHcCCcc
Confidence 479999999999999999998888789999999996212335667777788887 56666443333333221 11100
Q ss_pred ------CCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeec-ccccccccCCcceeecCCCCCeEEEEeCcCC----
Q psy3753 787 ------AFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQR-RTQSITRSNLVLKEKDIIHNGIIKFNPLYNW---- 853 (928)
Q Consensus 787 ------~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R-~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dW---- 853 (928)
.|+-.....|-+-. .+ +-+..+ +.+++.-|-. +.-..-|-.+.+... .|..-.+.|.-+|
T Consensus 92 ~~~~e~~Y~l~t~LaRplia-~~---lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~~aL---~P~l~ViaPwRd~~~~~ 164 (447)
T PRK05370 92 ISTGGVTYFNTTPLGRAVTG-TM---LVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLT---NPELKIYKPWLDQDFID 164 (447)
T ss_pred ccccCccccCCCcchHHHHH-HH---HHHHHHHhCCcEEEEcCCCCCCchHHHHHHHHHh---CCCCeEecchhhhhccc
Confidence 12211111111100 01 111112 3445543322 111112222211111 3566679999999
Q ss_pred ---CHHHHHHHHHHCCCCCC
Q psy3753 854 ---LEKDIWNYINTYNVPYN 870 (928)
Q Consensus 854 ---t~~DVw~Yi~~~~lp~n 870 (928)
+.+|--+|+++||+|+.
T Consensus 165 ~f~sR~e~i~Ya~~hGIpv~ 184 (447)
T PRK05370 165 ELGGRAEMSEFLIAHGFDYK 184 (447)
T ss_pred ccCCHHHHHHHHHHcCCCCC
Confidence 78999999999999986
No 129
>PRK02628 nadE NAD synthetase; Reviewed
Probab=96.48 E-value=0.035 Score=68.52 Aligned_cols=161 Identities=11% Similarity=-0.030 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHh--cCCeEEEEcChHHHHHHHHHHHhc----C---CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEE
Q psy3753 697 KTVLDALNNIVTD--YKPAVFASSLAAEDMVLTDLILRN----N---FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIK 767 (928)
Q Consensus 697 ~~a~~~I~~~~~~--~~~~~vs~SGGKDS~vll~L~~~~----~---~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~ 767 (928)
+.....++..+++ .++++|+.||||||++++.++.++ + .++..|++-+-...++|.+.++++++.+|++..
T Consensus 346 ~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~ 425 (679)
T PRK02628 346 NIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTAR 425 (679)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence 3333344444443 358999999999999999999886 2 457777883333557899999999999999988
Q ss_pred EEecCchhhhHHHHHhCCCCCcc--chh--hhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCC
Q psy3753 768 VYYPLNSEVNNYIFKNGINAFYD--SVQ--MRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIH 841 (928)
Q Consensus 768 ~~~p~~~~~~~~~~~~G~~~~~~--~~~--~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~ 841 (928)
++.-. ..+..+....+.+ +.. ... ....-|...+..-|..... +..++-|| -++|..- -+..... .
T Consensus 426 ~i~I~-~~~~~~~~~l~~~-~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~~----Gy~T~~~-G 497 (679)
T PRK02628 426 EIDIR-PAALQMLKDIGHP-FARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELAL----GWCTYGV-G 497 (679)
T ss_pred EEEcH-HHHHHHHHHhccc-cccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHHh----CceecCC-C
Confidence 76432 2222222222211 110 000 0112244444443444333 33444456 2333321 1111110 1
Q ss_pred CCeEEEEeCcCCCHHHHHHHHHHC
Q psy3753 842 NGIIKFNPLYNWLEKDIWNYINTY 865 (928)
Q Consensus 842 ~~~~~~~PI~dWt~~DVw~Yi~~~ 865 (928)
...--++||.+-+..+|+...+..
T Consensus 498 D~~~~~~~~~~l~Kt~v~~l~~~~ 521 (679)
T PRK02628 498 DHMSHYNVNASVPKTLIQHLIRWV 521 (679)
T ss_pred CcccccccccCCcHHHHHHHHHHH
Confidence 134468999999999999877765
No 130
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=96.35 E-value=0.017 Score=61.95 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeEEEEcChHHHHHHHHHHHh-cCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchh
Q psy3753 701 DALNNIVTDYKPAVFASSLAAEDMVLTDLILR-NNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSE 775 (928)
Q Consensus 701 ~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~-~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~ 775 (928)
+.|+..+...+++.+.+|||.||++++.++.+ .+.++..+.++.+...+.=..+++++++.+|++.+.+......
T Consensus 8 ~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~~ 83 (255)
T PF00733_consen 8 EAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPED 83 (255)
T ss_dssp HHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HHH
T ss_pred HHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceeeechhh
Confidence 34444444456899999999999999999999 6788999999888877645588999999999998777665544
No 131
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=96.26 E-value=0.016 Score=60.97 Aligned_cols=125 Identities=10% Similarity=0.057 Sum_probs=76.3
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEE-EE--cCC----CChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIF-TL--NTG----RLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNG 784 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vv-f~--DTg----~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G 784 (928)
+++++|||||||+..++.+.+. .++..+ .+ .+. .|.+ ..+.++..++..|+++..+......
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~~s~~~H~~-~~~~~~~qA~algipl~~~~~~~~~--------- 70 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-HEVISLVNIMPENEESYMFHGV-NAHLTDLQAESIGIPLIKLYTEGTE--------- 70 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCCCccccccc-CHHHHHHHHHHcCCCeEEeecCCCc---------
Confidence 3678999999999999999888 655433 22 221 1111 3477888889999987654221110
Q ss_pred CCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHH
Q psy3753 785 INAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYI 862 (928)
Q Consensus 785 ~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi 862 (928)
....+.+.++++ +.+.+++|--..+...+....+.+ .-+..-+.||..-+.+++..=+
T Consensus 71 ----------------e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~----~lgl~~~~PLW~~~~~~ll~e~ 130 (223)
T TIGR00290 71 ----------------EDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCR----ELGLKSFAPLWHRDPEKLMEEF 130 (223)
T ss_pred ----------------cHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHH----hcCCEEeccccCCCHHHHHHHH
Confidence 012233444443 567888887776663222212211 2366679999888888877665
Q ss_pred HHCCC
Q psy3753 863 NTYNV 867 (928)
Q Consensus 863 ~~~~l 867 (928)
...|+
T Consensus 131 i~~G~ 135 (223)
T TIGR00290 131 VEEKF 135 (223)
T ss_pred HHcCC
Confidence 55554
No 132
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=96.15 E-value=0.02 Score=68.16 Aligned_cols=109 Identities=17% Similarity=0.325 Sum_probs=80.5
Q ss_pred HHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCCeEEEEecCC-CCCccccccc
Q psy3753 390 FNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCI-NSCGHHHIGN 468 (928)
Q Consensus 390 ~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k~ki~iSGCp-n~C~~~~~aD 468 (928)
.-.+..|+..|+-... ...++||| |...++|-++++.+|.++.. +++ .+||+|-||- |+-+...-||
T Consensus 616 ~~~~~ILQ~~~~R~~k----te~isCPg---CGRT~~dlq~~~~~I~~~~~----hl~-GvkiavMGCIVNGPGEmadAd 683 (733)
T PLN02925 616 NTSFGLLQGCRMRNTK----TEYVSCPS---CGRTLFDLQEVSAEIREKTS----HLP-GVSIAIMGCIVNGPGEMADAD 683 (733)
T ss_pred HHHHHHHHHhCccccC----CeEEECCC---CCCccccHHHHHHHHHHHhh----cCC-CceEEEEeeeecCCccccccc
Confidence 4456777777776443 35899985 88888888889999988753 333 5799999998 9999999999
Q ss_pred EEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcc
Q psy3753 469 IGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCY 525 (928)
Q Consensus 469 ig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~ 525 (928)
+|++|..+ ...+||+|-.. +...+|.+++.+-+..++. +|++
T Consensus 684 ~GyVG~gp---gKI~LYvgKec---------V~~nIpeeeAvd~LIeLIK---e~G~ 725 (733)
T PLN02925 684 FGYVGGAP---GKIDLYVGKEV---------VKRGIAMEEATDALIQLIK---DHGR 725 (733)
T ss_pred cceeccCC---CeeEEEeccee---------hhcCCCHHHHHHHHHHHHH---HcCc
Confidence 99999653 45799998653 3346788877665555554 5554
No 133
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.05 E-value=0.02 Score=50.68 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=46.9
Q ss_pred eEEEEcChHHHHHHHHHHHhc---CCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCch
Q psy3753 713 AVFASSLAAEDMVLTDLILRN---NFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNS 774 (928)
Q Consensus 713 ~~vs~SGGKDS~vll~L~~~~---~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~ 774 (928)
+++++|||+||+++++++.+. ...+.++++| ..++.+.+..+.++.+..+.-....
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~Iv~G~~~~ 59 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV------AFVRILKRLAAEEGADVIILGHNAD 59 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH------HHHHHHHHHHHHcCCCEEEEcCCch
Confidence 478999999999999999987 7788889988 7888888999999988776644433
No 134
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=95.92 E-value=0.014 Score=66.15 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=78.4
Q ss_pred EEEEcChHHHHHHHHHHHhcC-CCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCchhhhHHH----HHhCC--
Q psy3753 714 VFASSLAAEDMVLTDLILRNN-FDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLNSEVNNYI----FKNGI-- 785 (928)
Q Consensus 714 ~vs~SGGKDS~vll~L~~~~~-~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~~~~~~~~----~~~G~-- 785 (928)
+++||||-|+++++.++.+.+ .+|..+++|+|.. .+-.+-+++-+..+|. +++++.-....+.+++ ..+..
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~-~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Ye 79 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP-DEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYE 79 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BT
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc-HHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999987 7999999999984 2555667777788897 7777754433332221 11110
Q ss_pred CCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeeccccc-ccccCCcceeecCCCCCeEEEEeCcCC--CHHHHHHHH
Q psy3753 786 NAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQS-ITRSNLVLKEKDIIHNGIIKFNPLYNW--LEKDIWNYI 862 (928)
Q Consensus 786 ~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES-~~R~~~~~~~~d~~~~~~~~~~PI~dW--t~~DVw~Yi 862 (928)
..|+-.....|-+- ..|...+.+. .+.+++.-|-..-.. .-|-...+... .|..-.+.|+-+| +.+|..+|+
T Consensus 80 g~YpL~tsl~RplI-a~~~v~~A~~-~ga~~vaHG~TgkGNDqvRFe~~~~al---~P~l~viaP~Rd~~~~R~~~i~ya 154 (388)
T PF00764_consen 80 GRYPLSTSLARPLI-AKKLVEVARE-EGADAVAHGCTGKGNDQVRFELSIRAL---APELKVIAPWRDWEFSREEEIEYA 154 (388)
T ss_dssp TTB--CCCCHHHHH-HHHHHHHHHH-HT-SEEE----TTSSHHHHHHHHHHHH---STTSEEE-GGGHHHHHHHHHHHHH
T ss_pred CCccccccchHHHH-HHHHHHHHHH-cCCeEEeccCCcCCCchhHHHHHHHHh---CcCCcEecccchhhhhHHHHHHHH
Confidence 00111111111111 0111111110 144555444321111 12222222112 3566679999988 788999999
Q ss_pred HHCCCCCChhhhcCC
Q psy3753 863 NTYNVPYNTLYDNGY 877 (928)
Q Consensus 863 ~~~~lp~npLYd~Gy 877 (928)
++||+|+..--+.-|
T Consensus 155 ~~~gIpv~~~~~~~y 169 (388)
T PF00764_consen 155 KKHGIPVPVTKKKPY 169 (388)
T ss_dssp HHTT----SS---SS
T ss_pred HHcCCCCCCCCCCCC
Confidence 999999876543333
No 135
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=95.65 E-value=0.11 Score=61.58 Aligned_cols=127 Identities=13% Similarity=0.018 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHHHH----hcCCeEEEEcChHHHHHHHHHHHhcCC--CceEEEEcCC--CChHHHHHHHHHHHHHcCC
Q psy3753 693 NSFVKTVLDALNNIVT----DYKPAVFASSLAAEDMVLTDLILRNNF--DINIFTLNTG--RLHSETLNMLNKIYLTYKY 764 (928)
Q Consensus 693 ~~~~~~a~~~I~~~~~----~~~~~~vs~SGGKDS~vll~L~~~~~~--~i~vvf~DTg--~efpeT~~~i~~~~~~~g~ 764 (928)
++..+...+.+.++++ ...++.+.+|||.||++++.++.+... ++..+.++.+ .++.| ..+++++++++|+
T Consensus 232 ~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E-~~~A~~vA~~lg~ 310 (467)
T TIGR01536 232 EDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDE-SPYARKVADHLGT 310 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCCh-HHHHHHHHHHhCC
Confidence 3334444444444443 234789999999999999999988754 5777777665 34555 3699999999999
Q ss_pred eEEEEecCchhhh----HHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccc
Q psy3753 765 KIKVYYPLNSEVN----NYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITR 829 (928)
Q Consensus 765 ~i~~~~p~~~~~~----~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R 829 (928)
+.+.+........ +.+.....| +.. |. .....-+.+..+ +.+++++|.-.||-..-
T Consensus 311 ~~~~i~~~~~~~~~~~~~~v~~~~~p-~~~-------~~-~~~~~~l~~~a~~~G~~vlltG~GaDElf~G 372 (467)
T TIGR01536 311 EHHEVLFSVEEGLDALPEVIYHLEDP-TTI-------RA-SIPLYLLSKLAREDGVKVVLSGEGADELFGG 372 (467)
T ss_pred cCeEEECCHHHHHHHHHHHHHhhCCC-CCC-------ch-HHHHHHHHHHHHhcCCEEEEecCcchhcccC
Confidence 9877765433321 222222211 111 00 011111222232 47899999999998543
No 136
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=95.14 E-value=0.046 Score=57.63 Aligned_cols=58 Identities=10% Similarity=0.049 Sum_probs=40.4
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCC------hHHHHHHHHHHHHHcCCeEEEEe
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRL------HSETLNMLNKIYLTYKYKIKVYY 770 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~e------fpeT~~~i~~~~~~~g~~i~~~~ 770 (928)
+++++|||||||+..++.+.+. .++..++.-...+ .-...+.++..++..|++++.+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~ 65 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLY 65 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEE
Confidence 4688999999999999988877 5555444322211 11134678888999999987654
No 137
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=95.13 E-value=0.096 Score=62.55 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=77.1
Q ss_pred HHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecC-CCcccccc
Q psy3753 104 ILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQ-EDRAAIFV 182 (928)
Q Consensus 104 ~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~-~~c~~~~~ 182 (928)
.+.-|++.|+... .-.+++||+ |...++|-..++.+|.++. ..||+ +||+|=||. |+-....-
T Consensus 618 ~~~ILQ~~~~R~~------kte~isCPg---CGRT~~dlq~~~~~I~~~~------~hl~G-vkiavMGCIVNGPGEmad 681 (733)
T PLN02925 618 SFGLLQGCRMRNT------KTEYVSCPS---CGRTLFDLQEVSAEIREKT------SHLPG-VSIAIMGCIVNGPGEMAD 681 (733)
T ss_pred HHHHHHHhCcccc------CCeEEECCC---CCCccccHHHHHHHHHHHh------hcCCC-ceEEEEeeeecCCccccc
Confidence 3445666677543 245899996 5678899899999998774 34665 699999997 55666778
Q ss_pred cceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcC
Q psy3753 183 HDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGR 242 (928)
Q Consensus 183 ~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~ 242 (928)
+|+|++|...+ ..++|+|-. .+...+|++++++.+..++ +++|.
T Consensus 682 Ad~GyVG~gpg----KI~LYvgKe---------cV~~nIpeeeAvd~LIeLI---Ke~G~ 725 (733)
T PLN02925 682 ADFGYVGGAPG----KIDLYVGKE---------VVKRGIAMEEATDALIQLI---KDHGR 725 (733)
T ss_pred cccceeccCCC----eeEEEecce---------ehhcCCCHHHHHHHHHHHH---HHcCc
Confidence 89999997652 578998843 2345789998877666655 46664
No 138
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=95.03 E-value=0.15 Score=57.68 Aligned_cols=145 Identities=16% Similarity=0.168 Sum_probs=90.0
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEE-cCCCChHHHHHHHHHHH-HHc---CCeEEEEecCchhhhHHHHHhCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTL-NTGRLHSETLNMLNKIY-LTY---KYKIKVYYPLNSEVNNYIFKNGI 785 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~-DTg~efpeT~~~i~~~~-~~~---g~~i~~~~p~~~~~~~~~~~~G~ 785 (928)
++.++..|||-||-|..+|+.+.|..+..+|+ ..++..+++.+-+..+. .++ +.++..+.-+...+.+.+...-.
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~~ 255 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKVP 255 (383)
T ss_pred CcEEEEEeCCCChHHHHHHHHhcCCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhcC
Confidence 46788999999999999999999999988888 45566777766666666 443 33444443344433322322222
Q ss_pred CCCccchhhhhhhhhhcccchHHHhh---c--CCcEEEeeeccccccccc--CCcceeecCCCCCeEEEEeCcCCCHHHH
Q psy3753 786 NAFYDSVQMRKKCCYIRKVKPLKKAL---I--GNKSWITGQRRTQSITRS--NLVLKEKDIIHNGIIKFNPLYNWLEKDI 858 (928)
Q Consensus 786 ~~~~~~~~~~~~Cc~~~K~~Pl~~~l---~--~~~~~i~G~R~~ES~~R~--~~~~~~~d~~~~~~~~~~PI~dWt~~DV 858 (928)
.. +-|-++|..=++.+- + +..+++||-.-.|=...- ++..++. ..+...++||.-|..+||
T Consensus 256 ~~---------y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL~~i~~---~t~~pIlRPLI~~DK~eI 323 (383)
T COG0301 256 ES---------YRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENLRVIDS---VTNTPVLRPLIGLDKEEI 323 (383)
T ss_pred cc---------ceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHHHHHHHh---ccCCceeccccCCCHHHH
Confidence 11 223334432222221 2 557888886554432222 2222222 235678999999999999
Q ss_pred HHHHHHCCC
Q psy3753 859 WNYINTYNV 867 (928)
Q Consensus 859 w~Yi~~~~l 867 (928)
-+.-++-|-
T Consensus 324 i~~Ar~IgT 332 (383)
T COG0301 324 IEIARRIGT 332 (383)
T ss_pred HHHHHHhCC
Confidence 999998876
No 139
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=94.49 E-value=0.15 Score=59.76 Aligned_cols=107 Identities=17% Similarity=0.360 Sum_probs=76.1
Q ss_pred HHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCCeEEEEecCC-CCCcccccccEE
Q psy3753 392 LWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCI-NSCGHHHIGNIG 470 (928)
Q Consensus 392 ~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k~ki~iSGCp-n~C~~~~~aDig 470 (928)
.|..|+..++-.. -...++||| |...++|-++.+..|.++.. |++ .+||+|-||- |+-+.-.-||+|
T Consensus 494 af~ILQaaR~R~s----Kte~isCP~---CgRtlfdlq~t~~~i~~~t~----Hl~-g~kIaiMGCiVNGpGEmadAd~G 561 (606)
T PRK00694 494 AFGTLQSAGVRLV----KTEYISCPG---CGRTLFDLLEVTQRIRERTQ----HLP-GLKIAVMGCIVNGPGEMADADFG 561 (606)
T ss_pred HHHHHHHhccccc----cceEEECCC---CCceeehHHHHHHHHHHHhc----cCC-CceEEEEEeEecCCccccccccc
Confidence 3455655554433 335799985 88888888888888887653 333 6899999997 999999999999
Q ss_pred EEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcc
Q psy3753 471 ILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCY 525 (928)
Q Consensus 471 ~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~ 525 (928)
++|..+ ...+||+|=.. +...+|.+++.+-+-.|+. ++++
T Consensus 562 yVG~gp---gkI~LY~gKec---------V~~nIPee~Avd~LI~LIk---e~G~ 601 (606)
T PRK00694 562 FVGSKT---GMIDLYVKHTC---------VKAHIPMENAEEELVQLLK---EHGV 601 (606)
T ss_pred eecCCC---CeEEEEeccee---------hhcCCCHHHHHHHHHHHHH---HcCC
Confidence 999653 45799998642 3346788876665555544 5554
No 140
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=94.46 E-value=0.61 Score=50.55 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=94.4
Q ss_pred chhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhcCCC------ceEEEEcCCCChHHHHHHHHHHHHHc
Q psy3753 691 PLNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRNNFD------INIFTLNTGRLHSETLNMLNKIYLTY 762 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~~~~------i~vvf~DTg~efpeT~~~i~~~~~~~ 762 (928)
..+...+...+.|+..+++. +.+++..|||-||++++.|+.++..+ +-.+.+..+.--+.+.+-+..+.+.+
T Consensus 4 d~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~l 83 (268)
T COG0171 4 DLEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEAL 83 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHh
Confidence 34555666777777776654 57999999999999999999887542 45555544422556777888889999
Q ss_pred CCeEEEEecCchhhhHH----HHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeecccccccccCC--ccee
Q psy3753 763 KYKIKVYYPLNSEVNNY----IFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSITRSNL--VLKE 836 (928)
Q Consensus 763 g~~i~~~~p~~~~~~~~----~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~~R~~~--~~~~ 836 (928)
|+....+ +....+..+ ....... ...+.....-.-..+. .-+..+.......++|+ .+++.. -++.
T Consensus 84 g~~~~~i-~I~~~v~~~~~~~~~~~~~~-~~~~~~~~NikaR~Rm-~~lY~~An~~~~lVlGT-----gn~sE~~~Gy~T 155 (268)
T COG0171 84 GIDYKEI-NIKPAVDAFLKKLLKLFLGI-YLEDLALGNIKARLRM-VILYAIANKLGGLVLGT-----GNKSELALGYFT 155 (268)
T ss_pred CCceEEE-ecHHHHHHHHHhhhhhhccc-chhhHHHhhhhHHHHH-HHHHHHHhhcCCEEEcC-----CcHHHHhcCcee
Confidence 9874443 211112111 1111000 0011000000000000 01111222334455554 233321 2222
Q ss_pred ecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCCh
Q psy3753 837 KDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNT 871 (928)
Q Consensus 837 ~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~np 871 (928)
.. ..+-.-++||.+-...+|+..++..++|-+-
T Consensus 156 ky--GDg~~d~~Pi~~L~KtqV~~La~~l~ipe~I 188 (268)
T COG0171 156 KY--GDGAVDINPIADLYKTQVYALARHLGIPEEI 188 (268)
T ss_pred cc--cCcccChhhhcCCcHHHHHHHHHHcCCCHHH
Confidence 21 2244569999999999999999988887544
No 141
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=93.91 E-value=0.05 Score=66.34 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCc
Q psy3753 70 MLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMH 114 (928)
Q Consensus 70 ~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~ 114 (928)
.|+++|++||+++|++|+||.+.|.+|+.++++++.++|.+.|+.
T Consensus 279 ~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L~~~glp 323 (731)
T cd01916 279 DILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDLVSGKIP 323 (731)
T ss_pred cHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999999999999985
No 142
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=93.81 E-value=0.22 Score=58.80 Aligned_cols=102 Identities=17% Similarity=0.285 Sum_probs=73.9
Q ss_pred HHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCCeEEEEecCC-CCCcccccccEEE
Q psy3753 393 WTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCI-NSCGHHHIGNIGI 471 (928)
Q Consensus 393 ~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k~ki~iSGCp-n~C~~~~~aDig~ 471 (928)
|..|+..++-... .--++|| .|...++|-++...+|.++. .|++ .+||+|-||- |+-+.-+-||+|.
T Consensus 503 f~ILQa~r~R~sK----TEyISCP---sCGRTLfDLq~tta~Ik~~t----~HLk-GlkI~IMGCIVNGPGEMADADfGY 570 (611)
T PRK02048 503 FGILQAGRLRTSK----TEYISCP---GCGRTLYDLQSTIARIKEAT----SHLK-GLKIGIMGCIVNGPGEMADADYGY 570 (611)
T ss_pred HHHHHHhcccccc----ceEEECC---CCCcchhhHHHHHHHHHHHh----CCCC-CceEEEEEeEecCCchhhhcccce
Confidence 4455554443332 2468998 58889999888888888775 3444 5899999997 9999999999999
Q ss_pred EeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHH
Q psy3753 472 LGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILK 518 (928)
Q Consensus 472 ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~ 518 (928)
+|..+ ...++|+|-. .+...+|.+++.+-+..++.
T Consensus 571 VG~gp---gkI~LY~gke---------~V~~nIp~e~Avd~Li~LIk 605 (611)
T PRK02048 571 VGAGR---GKISLYKQKE---------CVEKNIPEEEAVERLIELIK 605 (611)
T ss_pred ecCCC---CeEEEEeccE---------EEecCCCHHHHHHHHHHHHH
Confidence 99643 4579999865 23346888877666555554
No 143
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=93.70 E-value=0.2 Score=52.10 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=77.9
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEE-E--cCC----CChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFT-L--NTG----RLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNG 784 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf-~--DTg----~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G 784 (928)
+.++.+||||||.-.+|++.+.+.++..+. + ..+ .|+| -.++++..++-.|+++........
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~-n~~~~~~~Ae~~gi~l~~~~~~g~---------- 70 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENGDSYMFHTP-NLELAELQAEAMGIPLVTFDTSGE---------- 70 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCCCeeeeecc-chHHHHHHHHhcCCceEEEecCcc----------
Confidence 467889999999999999999987765322 2 222 1233 446777788888888777654431
Q ss_pred CCCCccchhhhhhhhhhcccchHHHhhcC--CcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHH
Q psy3753 785 INAFYDSVQMRKKCCYIRKVKPLKKALIG--NKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYI 862 (928)
Q Consensus 785 ~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~--~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi 862 (928)
....++.+.+++.+ .+.+++|-=..+- ++.+...+.. .-+...+.||..-..+++..-+
T Consensus 71 ---------------~e~eve~L~~~l~~l~~d~iv~GaI~s~y-qk~rve~lc~---~lGl~~~~PLWg~d~~ell~e~ 131 (223)
T COG2102 71 ---------------EEREVEELKEALRRLKVDGIVAGAIASEY-QKERVERLCE---ELGLKVYAPLWGRDPEELLEEM 131 (223)
T ss_pred ---------------chhhHHHHHHHHHhCcccEEEEchhhhHH-HHHHHHHHHH---HhCCEEeecccCCCHHHHHHHH
Confidence 11234455566654 3466766433322 2222111111 2366779999988888888877
Q ss_pred HHCCC
Q psy3753 863 NTYNV 867 (928)
Q Consensus 863 ~~~~l 867 (928)
-..|+
T Consensus 132 ~~~Gf 136 (223)
T COG2102 132 VEAGF 136 (223)
T ss_pred HHcCC
Confidence 76654
No 144
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=93.57 E-value=0.52 Score=56.63 Aligned_cols=96 Identities=8% Similarity=0.018 Sum_probs=66.9
Q ss_pred CccccccccccC-CchhhhHHHHHHHHHHHHHhc----CCeEEEEcChHHHHHHHHHHHhcCCCceE--EEEcCCCC-hH
Q psy3753 678 FSEKYQTSADEK-IPLNSFVKTVLDALNNIVTDY----KPAVFASSLAAEDMVLTDLILRNNFDINI--FTLNTGRL-HS 749 (928)
Q Consensus 678 ~~~~yqps~~~~-~~l~~~~~~a~~~I~~~~~~~----~~~~vs~SGGKDS~vll~L~~~~~~~i~v--vf~DTg~e-fp 749 (928)
...+++++.... .......+...+.|+...+.. .++.+.+|||-||+++..++.+..+.... +.++++.. ++
T Consensus 193 ~~~y~~~~~~~~~~~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~ 272 (542)
T COG0367 193 IRRYWRLSEKTSKESADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSP 272 (542)
T ss_pred eeeeecccccccccchHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCc
Confidence 444555555433 356666777777777766654 47889999999999999999998655433 56666655 56
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCch
Q psy3753 750 ETLNMLNKIYLTYKYKIKVYYPLNS 774 (928)
Q Consensus 750 eT~~~i~~~~~~~g~~i~~~~p~~~ 774 (928)
|+ ++++++++.+|.+.+.+.-...
T Consensus 273 D~-~~a~~~A~~lg~~h~~~~~~~~ 296 (542)
T COG0367 273 DA-KYARAVAKFLGTPHHEIILTNE 296 (542)
T ss_pred hH-HHHHHHHHHhCCCcEEEeecHH
Confidence 65 8899999999986655444333
No 145
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=93.40 E-value=0.62 Score=56.76 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHHHHh----cCCeEEEEcChHHHHHHHHHHHhcC-CCceEEEEcCCC----ChHHHHHHHHHHHHHcC
Q psy3753 693 NSFVKTVLDALNNIVTD----YKPAVFASSLAAEDMVLTDLILRNN-FDINIFTLNTGR----LHSETLNMLNKIYLTYK 763 (928)
Q Consensus 693 ~~~~~~a~~~I~~~~~~----~~~~~vs~SGGKDS~vll~L~~~~~-~~i~vvf~DTg~----efpeT~~~i~~~~~~~g 763 (928)
++.++...+.+.++++. -.++.+..|||-||++++.++.+.. .++..+.+.... .+.|+ +|++.+++++|
T Consensus 239 ~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~-~~A~~vA~~~g 317 (589)
T TIGR03104 239 ADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEF-EYSDIIAERFH 317 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChH-HHHHHHHHHhC
Confidence 33344445555554443 2478899999999999999988764 346655443321 35665 79999999999
Q ss_pred CeEEEEecCchhh----hHHHHHhCCCCCccchhhhhhhhhhcccchHHHhh-cCCcEEEeeeccccccccc
Q psy3753 764 YKIKVYYPLNSEV----NNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKAL-IGNKSWITGQRRTQSITRS 830 (928)
Q Consensus 764 ~~i~~~~p~~~~~----~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l-~~~~~~i~G~R~~ES~~R~ 830 (928)
.+.+.+....... ...++..+.|.. .+.... .. -+.+.. ++.+++++|.=+||-..-.
T Consensus 318 ~~h~~i~~~~~~~~~~l~~~v~~~~~P~~-~~~~~~---~~-----~l~~~a~~~~kV~LsGeGaDElFgGY 380 (589)
T TIGR03104 318 TRHHKIRIPNHRVLPALPEAVAAMSEPMV-SHDCVA---FY-----LLSEEVSKHVKVVQSGQGADEVFGGY 380 (589)
T ss_pred CcCeEEEcCHHHHHHHHHHHHHHhCCCCC-CchHHH---HH-----HHHHHHhCCCeEEeecCchHhcccCc
Confidence 9877665544332 233444444332 211111 00 022222 3578899999999876544
No 146
>KOG1622|consensus
Probab=93.03 E-value=0.53 Score=53.23 Aligned_cols=148 Identities=14% Similarity=0.221 Sum_probs=92.8
Q ss_pred eEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchh-HHHHHHHhcCCceeEeeccccchhhHHHHHHcCCccee
Q psy3753 583 GIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYS-IAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFV 661 (928)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~-~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~ 661 (928)
-|++.+.++++.+- .++++++ |+.++-++ ++..+|+-|| |-..+ |
T Consensus 141 ~VlltHgdsl~~v~-------~g~kv~a-----~s~n~~va~i~~e~kkiyg----lqfhp------------------E 186 (552)
T KOG1622|consen 141 TVLLTHGDSLSKVP-------EGFKVVA-----FSGNKPVAGILNELKKIYG----LQFHP------------------E 186 (552)
T ss_pred eeeeccccchhhcc-------ccceeEE-----eecCcceeeehhhhhhhhc----CCCCC------------------c
Confidence 47999999988873 4566554 45555333 3455555555 21111 3
Q ss_pred ecCCCChHHHhccCCcCccccc-cccccCCchhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-C-CCce
Q psy3753 662 IRHDKNINSALHGLNIFSEKYQ-TSADEKIPLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-N-FDIN 738 (928)
Q Consensus 662 ~~~~~~~~~~l~~~~~~~~~yq-ps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~-~~i~ 738 (928)
+..+.+-...+.++- || +...+....+.++++.+..|+..+. -.+++++.|||-||+|+..|++++ + ..+.
T Consensus 187 V~~t~~g~~ll~nFl-----~~vc~~~~n~tmenre~e~I~~i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ 260 (552)
T KOG1622|consen 187 VTLTPNGKELLKNFL-----FDVCGCSGNFTMENREEECINEIRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGPDRVH 260 (552)
T ss_pred ccccCchhHHHHHHH-----HHHcCCccCcchhhhhHHHHHHHHHHhc-ccceEEEecCCchHHHHHHHHHHhhCCCceE
Confidence 333333344444321 11 1223344677777887777777776 347889999999999999999986 4 4688
Q ss_pred EEEEcCCCC-hHHHHHHHHHHHHHcCCeEEEEec
Q psy3753 739 IFTLNTGRL-HSETLNMLNKIYLTYKYKIKVYYP 771 (928)
Q Consensus 739 vvf~DTg~e-fpeT~~~i~~~~~~~g~~i~~~~p 771 (928)
.+++|-|.- .-|. +-+++.-..+|++|.++..
T Consensus 261 ai~vdNG~mrk~Ea-~~V~~tl~~lgi~i~v~~a 293 (552)
T KOG1622|consen 261 AIHVDNGFMRKKEA-EQVEKTLVYLGIPITVVDA 293 (552)
T ss_pred EEEecccchhhhHH-HHHHHHHHHcCCceEEeec
Confidence 999999964 3343 3334444448999888754
No 147
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=92.59 E-value=0.11 Score=54.81 Aligned_cols=59 Identities=7% Similarity=-0.031 Sum_probs=35.7
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEE-Ec-CCCC---hHH-HHHHHHHHHHHcCCeEEEEec
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFT-LN-TGRL---HSE-TLNMLNKIYLTYKYKIKVYYP 771 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf-~D-Tg~e---fpe-T~~~i~~~~~~~g~~i~~~~p 771 (928)
+++++|||||||+..++.+.+. .++..+. +. .+.. |.. ..+.++..++..|+++..+..
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPT 66 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEc
Confidence 4688999999999999999888 5554332 22 1111 111 256788888899999876644
No 148
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=92.50 E-value=0.38 Score=56.38 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=68.6
Q ss_pred cceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecC-CCcccccccceEEEEEEecCCeeeEEEE
Q psy3753 124 RNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQ-EDRAAIFVHDIGLRAIKNKLGKIGFCVI 202 (928)
Q Consensus 124 Rni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~-~~c~~~~~~Dig~ia~~~~~~~~gf~v~ 202 (928)
-+.++||+ |...++|....++.|.++. ..|| -+||+|=||- |+-....-+|+|++|...+ ..++|
T Consensus 508 te~isCP~---CgRtlfdlq~t~~~i~~~t------~Hl~-g~kIaiMGCiVNGpGEmadAd~GyVG~gpg----kI~LY 573 (606)
T PRK00694 508 TEYISCPG---CGRTLFDLLEVTQRIRERT------QHLP-GLKIAVMGCIVNGPGEMADADFGFVGSKTG----MIDLY 573 (606)
T ss_pred ceEEECCC---CCceeehHHHHHHHHHHHh------ccCC-CceEEEEEeEecCCccccccccceecCCCC----eEEEE
Confidence 46889995 5678999888888888765 3466 4999999996 5556667789999997652 57899
Q ss_pred EcccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcC
Q psy3753 203 VGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGR 242 (928)
Q Consensus 203 vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~ 242 (928)
+|-. .+...+|++++++.+..++ +++|.
T Consensus 574 ~gKe---------cV~~nIPee~Avd~LI~LI---ke~G~ 601 (606)
T PRK00694 574 VKHT---------CVKAHIPMENAEEELVQLL---KEHGV 601 (606)
T ss_pred ecce---------ehhcCCCHHHHHHHHHHHH---HHcCC
Confidence 8743 2345789998877665555 56664
No 149
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=91.82 E-value=2.2 Score=47.97 Aligned_cols=148 Identities=20% Similarity=0.271 Sum_probs=86.4
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcC-CCceEEEEcCCCChHHHHHHHHHHHHHcCCe-EEEEecCchhhhHHHHHh-CCCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNN-FDINIFTLNTGRLHSETLNMLNKIYLTYKYK-IKVYYPLNSEVNNYIFKN-GINA 787 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~-~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~-i~~~~p~~~~~~~~~~~~-G~~~ 787 (928)
++++++||||-|-+|++-++.+.+ -++..+..|.|.. .+=++.+++-+..+|.. ..++.-....+.+++... ..+.
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~-eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana 83 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANA 83 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC-hHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhc
Confidence 579999999999999999998876 7888999999987 67788898888889875 444432222222221100 0001
Q ss_pred CccchhhhhhhhhhcccchHHHhh---------c--CCcEEEe---eecccccccccCCcceeecCCCCCeEEEEeCcCC
Q psy3753 788 FYDSVQMRKKCCYIRKVKPLKKAL---------I--GNKSWIT---GQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNW 853 (928)
Q Consensus 788 ~~~~~~~~~~Cc~~~K~~Pl~~~l---------~--~~~~~i~---G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dW 853 (928)
.++. .+.=..+|.|.+ + +..++.- |-=.||= |--....-. .++.-.+.|..+|
T Consensus 84 ~Yeg--------~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv--RFe~~~~al---~p~lkiiAP~Rew 150 (403)
T COG0137 84 LYEG--------VYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV--RFELAILAL---NPDLKIIAPWREW 150 (403)
T ss_pred eeec--------cccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee--eeeeehhhh---CCCcEEEeehhhh
Confidence 1110 011111222222 1 3344432 2222221 111111111 3455568887765
Q ss_pred --CHHHHHHHHHHCCCCCChh
Q psy3753 854 --LEKDIWNYINTYNVPYNTL 872 (928)
Q Consensus 854 --t~~DVw~Yi~~~~lp~npL 872 (928)
+-++.-+|.+++|+|+.--
T Consensus 151 ~~~R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 151 NLTREEEIEYAEEHGIPVKAT 171 (403)
T ss_pred ccChHHHHHHHHHcCCCcccc
Confidence 7889999999999998765
No 150
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=91.75 E-value=0.51 Score=55.86 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=67.6
Q ss_pred ceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecC-CCcccccccceEEEEEEecCCeeeEEEEE
Q psy3753 125 NITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQ-EDRAAIFVHDIGLRAIKNKLGKIGFCVIV 203 (928)
Q Consensus 125 ni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~-~~c~~~~~~Dig~ia~~~~~~~~gf~v~v 203 (928)
.-++||+ |...++|.......|.++. ..||+ +||+|=||- |+-..-.-+|+|.+|...+ ..++|+
T Consensus 517 EyISCPs---CGRTLfDLq~tta~Ik~~t------~HLkG-lkI~IMGCIVNGPGEMADADfGYVG~gpg----kI~LY~ 582 (611)
T PRK02048 517 EYISCPG---CGRTLYDLQSTIARIKEAT------SHLKG-LKIGIMGCIVNGPGEMADADYGYVGAGRG----KISLYK 582 (611)
T ss_pred eEEECCC---CCcchhhHHHHHHHHHHHh------CCCCC-ceEEEEEeEecCCchhhhcccceecCCCC----eEEEEe
Confidence 3678995 6688999999888888765 35776 999999996 5555556789999996652 578998
Q ss_pred cccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcC
Q psy3753 204 GGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGR 242 (928)
Q Consensus 204 GG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~ 242 (928)
|-. .+...+|++++++.+..++ +++|.
T Consensus 583 gke---------~V~~nIp~e~Avd~Li~LI---k~~g~ 609 (611)
T PRK02048 583 QKE---------CVEKNIPEEEAVERLIELI---KANGD 609 (611)
T ss_pred ccE---------EEecCCCHHHHHHHHHHHH---HHcCC
Confidence 743 2345689998877766655 45553
No 151
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=90.66 E-value=1.8 Score=53.25 Aligned_cols=127 Identities=11% Similarity=0.050 Sum_probs=73.2
Q ss_pred hhhhHHHHHHHHHHHHHh----cCCeEEEEcChHHHHHHHHHHHhcC-CCceEEEEcCC-CChHHHHHHHHHHHHHcCCe
Q psy3753 692 LNSFVKTVLDALNNIVTD----YKPAVFASSLAAEDMVLTDLILRNN-FDINIFTLNTG-RLHSETLNMLNKIYLTYKYK 765 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~----~~~~~vs~SGGKDS~vll~L~~~~~-~~i~vvf~DTg-~efpeT~~~i~~~~~~~g~~ 765 (928)
.++.++...+.+.++++. -.++.+..|||-||++++.++.+.. .++..+.+... ..+.|. .+++.+++++|.+
T Consensus 236 ~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE~-~~A~~vA~~~g~~ 314 (628)
T TIGR03108 236 EADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDES-AYARQVAERYGTN 314 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCChH-HHHHHHHHHhCCC
Confidence 334445555555555543 2378889999999999999887653 45665555433 234554 8899999999998
Q ss_pred EEEEecCchhh---hHHHHHhCCCCCccchhhhh-hhhhhcccchHHHhhcCCcEEEeeeccccccc
Q psy3753 766 IKVYYPLNSEV---NNYIFKNGINAFYDSVQMRK-KCCYIRKVKPLKKALIGNKSWITGQRRTQSIT 828 (928)
Q Consensus 766 i~~~~p~~~~~---~~~~~~~G~~~~~~~~~~~~-~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~~ 828 (928)
.+++....... ..+......|. ........ ..|. .+-++.+++++|.=.||=..
T Consensus 315 h~~~~~~~~~~~~~~~~~~~~~~P~-~~~~~~~~~~~~~--------~a~~~~kV~LsG~GgDElf~ 372 (628)
T TIGR03108 315 HRVETVDPDDFSLVDRLAGLYDEPF-ADSSALPTYRVCE--------LARKRVTVALSGDGGDELFA 372 (628)
T ss_pred CeEEecCHHHHHHHHHHHHHhCCCC-CCchHHHHHHHHH--------HHHCCCCEEEeccchhhccc
Confidence 76665443322 12222333322 12111010 1111 12235678888888887655
No 152
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=89.24 E-value=2.7 Score=51.08 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhc----CCeEEEEcChHHHHHHHHHHHhcC------------CCceEEEEcCCCChHHHHHHHHHHH
Q psy3753 696 VKTVLDALNNIVTDY----KPAVFASSLAAEDMVLTDLILRNN------------FDINIFTLNTGRLHSETLNMLNKIY 759 (928)
Q Consensus 696 ~~~a~~~I~~~~~~~----~~~~vs~SGGKDS~vll~L~~~~~------------~~i~vvf~DTg~efpeT~~~i~~~~ 759 (928)
.+...+.+..+++.. .++.+.+|||-||++++.++.+.. +++..+.+... ..||. .++++++
T Consensus 219 ~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~-~~~D~-~~Ar~vA 296 (586)
T PTZ00077 219 LEEIREALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE-GSPDL-KAARKVA 296 (586)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC-CCchH-HHHHHHH
Confidence 344455555555432 478899999999999999998753 24555444331 35664 7899999
Q ss_pred HHcCCeEEEEec
Q psy3753 760 LTYKYKIKVYYP 771 (928)
Q Consensus 760 ~~~g~~i~~~~p 771 (928)
+++|.+.+.+..
T Consensus 297 ~~lg~~h~~i~~ 308 (586)
T PTZ00077 297 EYLGTEHHEFTF 308 (586)
T ss_pred HHhCCcCcEEEE
Confidence 999988765544
No 153
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=88.54 E-value=2.1 Score=51.74 Aligned_cols=77 Identities=9% Similarity=-0.007 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHhc----CCeEEEEcChHHHHHHHHHHHhcCC--------------CceEEEEcCCCChHHHHHHHH
Q psy3753 695 FVKTVLDALNNIVTDY----KPAVFASSLAAEDMVLTDLILRNNF--------------DINIFTLNTGRLHSETLNMLN 756 (928)
Q Consensus 695 ~~~~a~~~I~~~~~~~----~~~~vs~SGGKDS~vll~L~~~~~~--------------~i~vvf~DTg~efpeT~~~i~ 756 (928)
.++...+.++++++.. .++.+.+|||-||++++.++.+... ++..+.+.... .||. .+++
T Consensus 208 ~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~-~~D~-~~A~ 285 (554)
T PRK09431 208 DKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG-SPDL-KAAR 285 (554)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC-CChH-HHHH
Confidence 3445555555555432 4788999999999999999987532 45555554432 5664 8899
Q ss_pred HHHHHcCCeEEEEecCc
Q psy3753 757 KIYLTYKYKIKVYYPLN 773 (928)
Q Consensus 757 ~~~~~~g~~i~~~~p~~ 773 (928)
.+++.+|.+.+.+....
T Consensus 286 ~vA~~lg~~h~~v~~t~ 302 (554)
T PRK09431 286 EVADHLGTVHHEIHFTV 302 (554)
T ss_pred HHHHHhCCccEEEEeCH
Confidence 99999999876665543
No 154
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=88.00 E-value=0.49 Score=58.01 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCC
Q psy3753 357 NFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLS 402 (928)
Q Consensus 357 r~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~ 402 (928)
-.|+++|++||++.|.+|++|.+.|++++.++++++.++|.+.|+.
T Consensus 278 ~~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L~~~glp 323 (731)
T cd01916 278 ADILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDLVSGKIP 323 (731)
T ss_pred ccHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHHHhCCCC
Confidence 4679999999999999999999999999999999999999988864
No 155
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=87.91 E-value=0.66 Score=47.59 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=78.7
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCC--CChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCCCCc
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTG--RLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFY 789 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg--~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~~~~ 789 (928)
+++|++|||-||++...+++..+ +.+|.+ ...++...-.+.+++.+|.....+.-+...+.. -.-+|. |.
T Consensus 62 kiaVA~SGG~DSsas~iilR~~g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~i~k-GalnGR--fh 133 (255)
T COG1365 62 KIAVAYSGGVDSSASAIILRWAG-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLEDIEK-GALNGR--FH 133 (255)
T ss_pred eEEEEecCCcchHHHHHHHHhhc-----eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHHHHHh-hhccCC--CC
Confidence 58999999999999999999988 333333 344588888888888888655444322222110 011232 21
Q ss_pred cchhhhhhhhhhcccchHHHhhc-CCcEEEeeecccccccccCCcceeecCCCCCeEEEE--eCcCCCHHHHHHHHHHCC
Q psy3753 790 DSVQMRKKCCYIRKVKPLKKALI-GNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFN--PLYNWLEKDIWNYINTYN 866 (928)
Q Consensus 790 ~~~~~~~~Cc~~~K~~Pl~~~l~-~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~--PI~dWt~~DVw~Yi~~~~ 866 (928)
+ -.+|..+.....+.++-+ +.+++++|---.-++. .+.. ..+.+++| -++--|..|+-..+..++
T Consensus 134 p----CGRCh~~I~~~V~~k~re~di~~vafGDlLs~G~~-----svy~---eD~i~rlnlPAflAltK~Elr~il~~~~ 201 (255)
T COG1365 134 P----CGRCHSMIENAVMDKARELDIDVVAFGDLLSTGYG-----SVYR---EDGIFRLNLPAFLALTKDELRSILKWNG 201 (255)
T ss_pred C----cchHHHHHHHHHHHHHHhcCCeEEEEccccccccc-----ceec---cCCEEEEccHHHHhhCcHHHHHHHHhcC
Confidence 1 234555443333443332 4677888754332211 1111 12555554 244568888888888888
Q ss_pred CCC
Q psy3753 867 VPY 869 (928)
Q Consensus 867 lp~ 869 (928)
+..
T Consensus 202 ~e~ 204 (255)
T COG1365 202 YEL 204 (255)
T ss_pred ccc
Confidence 754
No 156
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=86.63 E-value=0.71 Score=56.73 Aligned_cols=45 Identities=16% Similarity=0.027 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCc
Q psy3753 70 MLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMH 114 (928)
Q Consensus 70 ~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~ 114 (928)
.|+++|++||.+.|++|+++.+.|.+++.++++++.++|.+.|+.
T Consensus 316 ~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~ 360 (781)
T PRK00941 316 DILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIP 360 (781)
T ss_pred cHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999999999998874
No 157
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=85.74 E-value=3.1 Score=50.49 Aligned_cols=73 Identities=10% Similarity=0.022 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHh----cCCeEEEEcChHHHHHHHHHHHhcC----------CCceEEEEcCCCC-hHHHHHHHHHHHHH
Q psy3753 697 KTVLDALNNIVTD----YKPAVFASSLAAEDMVLTDLILRNN----------FDINIFTLNTGRL-HSETLNMLNKIYLT 761 (928)
Q Consensus 697 ~~a~~~I~~~~~~----~~~~~vs~SGGKDS~vll~L~~~~~----------~~i~vvf~DTg~e-fpeT~~~i~~~~~~ 761 (928)
+...+.+..++++ -.++.+.+|||-||++++.++.+.. +++..+ ..|.+ .||. .+++.+.++
T Consensus 208 ~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tf--sig~~~~~D~-~~Ar~vA~~ 284 (578)
T PLN02549 208 LVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSF--CVGLEGSPDL-KAAREVADY 284 (578)
T ss_pred HHHHHHHHHHHHHHhccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEE--ecCCCCCCHH-HHHHHHHHH
Confidence 3444444444443 2378999999999999999998752 233333 34443 5554 688999999
Q ss_pred cCCeEEEEecC
Q psy3753 762 YKYKIKVYYPL 772 (928)
Q Consensus 762 ~g~~i~~~~p~ 772 (928)
+|.+.+.+...
T Consensus 285 lg~~h~ev~~~ 295 (578)
T PLN02549 285 LGTVHHEFHFT 295 (578)
T ss_pred hCCCCeEEEEC
Confidence 99876655443
No 158
>KOG0573|consensus
Probab=84.55 E-value=2.2 Score=48.63 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=36.4
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCC---CceEEEEcCC---CCh----H---HHHHHHHHHHHHcCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNF---DINIFTLNTG---RLH----S---ETLNMLNKIYLTYKY 764 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~---~i~vvf~DTg---~ef----p---eT~~~i~~~~~~~g~ 764 (928)
.+++|.||||-||+|+++|+.++-| +|..+-+--| ..+ | -...=++++...|+-
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P~ 317 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYPK 317 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhCCc
Confidence 6899999999999999999999754 3444333332 111 1 133456777788864
No 159
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=81.89 E-value=6.7 Score=48.80 Aligned_cols=76 Identities=7% Similarity=-0.060 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHH-------Hh-c--CCC-------------------------
Q psy3753 694 SFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLI-------LR-N--NFD------------------------- 736 (928)
Q Consensus 694 ~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~-------~~-~--~~~------------------------- 736 (928)
+......--|...+++. +.++++.|||-||++++.|+ .+ . +..
T Consensus 330 ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 409 (700)
T PLN02339 330 EIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFA 409 (700)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhh
Confidence 33333334455555543 57999999999999977775 22 2 211
Q ss_pred ---ceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEE
Q psy3753 737 ---INIFTLNTGRLHSETLNMLNKIYLTYKYKIKVY 769 (928)
Q Consensus 737 ---i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~ 769 (928)
+..+++-+-.--++|++-++.+++.+|+....+
T Consensus 410 ~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i 445 (700)
T PLN02339 410 KRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDV 445 (700)
T ss_pred cceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 466778777888999999999999999987765
No 160
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=79.79 E-value=44 Score=38.21 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=97.8
Q ss_pred CCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHhccCCcCccccc
Q psy3753 604 KQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQ 683 (928)
Q Consensus 604 ~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~yq 683 (928)
-++..|++-||...+ .=|-..+.+..+ +..-++-+......+-+..+..+|.+.+.+.-+.+.....+.+
T Consensus 34 ~Gv~~IEvG~p~~~~-~~~e~i~~i~~~-~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-------- 103 (363)
T TIGR02090 34 LGVDVIEAGFPIASE-GEFEAIKKISQE-GLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKL-------- 103 (363)
T ss_pred cCCCEEEEeCCCCCh-HHHHHHHHHHhc-CCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh--------
Confidence 378999999998765 346667777764 7777777777666777888889999888886555432222211
Q ss_pred cccccCCchhhhHHHHHHHHHHHHHhcCCeEEEE--cChHHHHHHHHHHHhc---CCCceEEEEcC-CCChH-HHHHHHH
Q psy3753 684 TSADEKIPLNSFVKTVLDALNNIVTDYKPAVFAS--SLAAEDMVLTDLILRN---NFDINIFTLNT-GRLHS-ETLNMLN 756 (928)
Q Consensus 684 ps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~--SGGKDS~vll~L~~~~---~~~i~vvf~DT-g~efp-eT~~~i~ 756 (928)
....+..++.+.+.++.+.+..-.+.+++ ++--|---++.++.++ +.+ .+.+.|| |...| ++.++++
T Consensus 104 -----~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~-~i~l~DT~G~~~P~~v~~li~ 177 (363)
T TIGR02090 104 -----KKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGAD-RINIADTVGVLTPQKMEELIK 177 (363)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCC-EEEEeCCCCccCHHHHHHHHH
Confidence 12344556667777776665533444443 4445556666766653 333 5788899 66666 5888899
Q ss_pred HHHHHcCCeEEE
Q psy3753 757 KIYLTYKYKIKV 768 (928)
Q Consensus 757 ~~~~~~g~~i~~ 768 (928)
.+.+.+++++.+
T Consensus 178 ~l~~~~~~~l~~ 189 (363)
T TIGR02090 178 KLKENVKLPISV 189 (363)
T ss_pred HHhcccCceEEE
Confidence 998888765544
No 161
>KOG2840|consensus
Probab=79.53 E-value=0.5 Score=51.58 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=89.6
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCC------CceEEEEcCCCCh--HHHHHHHHHHHHHcCCeEEEEecCchh----hhHH
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNF------DINIFTLNTGRLH--SETLNMLNKIYLTYKYKIKVYYPLNSE----VNNY 779 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~------~i~vvf~DTg~ef--peT~~~i~~~~~~~g~~i~~~~p~~~~----~~~~ 779 (928)
++.+.-||||||||+.+.+...+. +..++-+|-|..+ .....-+++...+|++++.++.+..-. ..++
T Consensus 53 ~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd~i 132 (347)
T KOG2840|consen 53 RVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMDEI 132 (347)
T ss_pred ccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccchHHHH
Confidence 577888999999999999887543 3556777777532 234455677888999999998763221 1122
Q ss_pred HHHhCCCCCccchhhhhhh---hhhcccchHHHhhc--CCcEEEeeecccccccccCCccee-------------ecC-C
Q psy3753 780 IFKNGINAFYDSVQMRKKC---CYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKE-------------KDI-I 840 (928)
Q Consensus 780 ~~~~G~~~~~~~~~~~~~C---c~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~-------------~d~-~ 840 (928)
..+.|.. .+.| |.+.+.+.+++... +..-..+|..+|+...+-.+..+. ... .
T Consensus 133 ~~~i~~~--------~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R~~~~~t~~~e 204 (347)
T KOG2840|consen 133 VSEIGQE--------IRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLERLTEITTPSLE 204 (347)
T ss_pred HHHHhhh--------hhcCceeecHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHhHHHHhhhccccccCccc
Confidence 2333311 2333 56667666666553 334457888888876654322211 110 0
Q ss_pred CCCeEEEEeCcCCCHHHHHHHHHHC
Q psy3753 841 HNGIIKFNPLYNWLEKDIWNYINTY 865 (928)
Q Consensus 841 ~~~~~~~~PI~dWt~~DVw~Yi~~~ 865 (928)
.+..-+++||-+=+..+|-.|-..+
T Consensus 205 ~~~~~r~kplk~~~~keivLya~~~ 229 (347)
T KOG2840|consen 205 MGIIPRLKPLKYASEKEIVLYASLS 229 (347)
T ss_pred cCccccccccccchhhehhhHHHHH
Confidence 1235678999988888887765544
No 162
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=78.96 E-value=51 Score=37.94 Aligned_cols=149 Identities=11% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHhccCCcCccccc
Q psy3753 604 KQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQ 683 (928)
Q Consensus 604 ~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~yq 683 (928)
-++..|++-||..+|.- |-..+.++.. +..-++-+.+.....-...+..+|++.+.+.-+.+.....+.+
T Consensus 38 ~GV~~IE~G~p~~~~~~-~e~i~~i~~~-~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-------- 107 (378)
T PRK11858 38 IGVDQIEAGFPAVSEDE-KEAIKAIAKL-GLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKL-------- 107 (378)
T ss_pred hCCCEEEEeCCCcChHH-HHHHHHHHhc-CCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHh--------
Confidence 37899999999998743 5667777763 7666666666555555777888999888876655432222211
Q ss_pred cccccCCchhhhHHHHHHHHHHHHHhcCCeEEEE--cChHHHHHHHHHHHhc---CCCceEEEEcCC-CChH-HHHHHHH
Q psy3753 684 TSADEKIPLNSFVKTVLDALNNIVTDYKPAVFAS--SLAAEDMVLTDLILRN---NFDINIFTLNTG-RLHS-ETLNMLN 756 (928)
Q Consensus 684 ps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~--SGGKDS~vll~L~~~~---~~~i~vvf~DTg-~efp-eT~~~i~ 756 (928)
....+..++.+.+.++.+.+..-.+.+++ ++--|---++.++..+ +.+ .+.+.||. .-.| ++.++++
T Consensus 108 -----~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~-~I~l~DT~G~~~P~~v~~lv~ 181 (378)
T PRK11858 108 -----KKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGAD-RVRFCDTVGILDPFTMYELVK 181 (378)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCC-EEEEeccCCCCCHHHHHHHHH
Confidence 12345556666667776655433454443 4445556666776653 333 57788985 5555 5888899
Q ss_pred HHHHHcCCeEEE
Q psy3753 757 KIYLTYKYKIKV 768 (928)
Q Consensus 757 ~~~~~~g~~i~~ 768 (928)
.+.+.++++|.+
T Consensus 182 ~l~~~~~~~l~~ 193 (378)
T PRK11858 182 ELVEAVDIPIEV 193 (378)
T ss_pred HHHHhcCCeEEE
Confidence 998888766554
No 163
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=78.37 E-value=57 Score=37.33 Aligned_cols=167 Identities=10% Similarity=0.037 Sum_probs=101.4
Q ss_pred eEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceee
Q psy3753 583 GIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVI 662 (928)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~ 662 (928)
|+.+..++..+-+ ..|. .-++..|++-||..+|. -|-..+.+++. +..-++-+.+....+....+..+|.+.+.+
T Consensus 17 ~~~~s~~~k~~ia-~~L~--~~Gv~~IEvG~p~~~~~-~~e~i~~i~~~-~~~~~i~~~~r~~~~di~~a~~~g~~~i~i 91 (365)
T TIGR02660 17 GVAFTAAEKLAIA-RALD--EAGVDELEVGIPAMGEE-ERAVIRAIVAL-GLPARLMAWCRARDADIEAAARCGVDAVHI 91 (365)
T ss_pred CCCCCHHHHHHHH-HHHH--HcCCCEEEEeCCCCCHH-HHHHHHHHHHc-CCCcEEEEEcCCCHHHHHHHHcCCcCEEEE
Confidence 4445555443333 3331 13789999999998763 36778888864 666677777766667777888899998877
Q ss_pred cCCCChHHHhccCCcCccccccccccCCchhhhHHHHHHHHHHHHHhcCCeEEEE--cChHHHHHHHHHHHh---cCCCc
Q psy3753 663 RHDKNINSALHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPAVFAS--SLAAEDMVLTDLILR---NNFDI 737 (928)
Q Consensus 663 ~~~~~~~~~l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~--SGGKDS~vll~L~~~---~~~~i 737 (928)
--+.+.......+. ...++-++.+.+.|+.+.+..-.+.+++ ++-.|---++.++.+ .+.+
T Consensus 92 ~~~~Sd~~~~~~~~-------------~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~- 157 (365)
T TIGR02660 92 SIPVSDLQIEAKLR-------------KDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGAD- 157 (365)
T ss_pred EEccCHHHHHHHhC-------------cCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcC-
Confidence 66554322222111 1234445555666665554332333333 334454556666554 3443
Q ss_pred eEEEEcC-CCChH-HHHHHHHHHHHHcCCeEEE
Q psy3753 738 NIFTLNT-GRLHS-ETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 738 ~vvf~DT-g~efp-eT~~~i~~~~~~~g~~i~~ 768 (928)
.+...|| |.-.| ++.++++.+.+.+++++.+
T Consensus 158 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~ 190 (365)
T TIGR02660 158 RFRFADTVGILDPFSTYELVRALRQAVDLPLEM 190 (365)
T ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4677887 45566 5888899999888776554
No 164
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=77.68 E-value=69 Score=34.66 Aligned_cols=149 Identities=9% Similarity=0.044 Sum_probs=91.2
Q ss_pred CCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHhccCCcCccccc
Q psy3753 604 KQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQ 683 (928)
Q Consensus 604 ~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~yq 683 (928)
-++..|++-||.+.|- -+-..+.++.. +..-++-+....-.+....+..+|++.+.+.-+.+.....+.+
T Consensus 32 ~Gv~~iE~g~p~~~~~-~~e~~~~l~~~-~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~-------- 101 (259)
T cd07939 32 AGVDEIEVGIPAMGEE-EREAIRAIVAL-GLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKL-------- 101 (259)
T ss_pred cCCCEEEEecCCCCHH-HHHHHHHHHhc-CCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHh--------
Confidence 4788999999998653 24567777763 5545555555555677778888999988886655433322221
Q ss_pred cccccCCchhhhHHHHHHHHHHHHHhcCCeEEEE--cChHHHHHHHHHHHh---cCCCceEEEEcC-CCChH-HHHHHHH
Q psy3753 684 TSADEKIPLNSFVKTVLDALNNIVTDYKPAVFAS--SLAAEDMVLTDLILR---NNFDINIFTLNT-GRLHS-ETLNMLN 756 (928)
Q Consensus 684 ps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~--SGGKDS~vll~L~~~---~~~~i~vvf~DT-g~efp-eT~~~i~ 756 (928)
..+.++.++.+.+.++.+.+..-.+.+++ ++.-|---++.++.+ .+.+ .+.+.|| |.-.| ++.+++.
T Consensus 102 -----~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~i~l~DT~G~~~P~~v~~lv~ 175 (259)
T cd07939 102 -----GKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGAD-RLRFADTVGILDPFTTYELIR 175 (259)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCC-EEEeCCCCCCCCHHHHHHHHH
Confidence 12334445555566665554432333333 444455555666655 3433 4677887 55666 5888899
Q ss_pred HHHHHcCCeEEE
Q psy3753 757 KIYLTYKYKIKV 768 (928)
Q Consensus 757 ~~~~~~g~~i~~ 768 (928)
.+.+.+++++.+
T Consensus 176 ~l~~~~~~~l~~ 187 (259)
T cd07939 176 RLRAATDLPLEF 187 (259)
T ss_pred HHHHhcCCeEEE
Confidence 999998866544
No 165
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=77.35 E-value=76 Score=34.51 Aligned_cols=167 Identities=7% Similarity=0.030 Sum_probs=100.1
Q ss_pred eEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceee
Q psy3753 583 GIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVI 662 (928)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~ 662 (928)
|+.++.++.++-+....+ -++..|++-+|+...+ -+...+.+.+ ++..-.+.+..-.-.+-+..+.++|.+.+.+
T Consensus 16 ~~~~s~~~k~~i~~~L~~---~Gv~~IEvG~P~~~~~-~~~~~~~l~~-~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 16 NAFFDTEDKIEIAKALDA---FGVDYIELTSPAASPQ-SRADCEAIAK-LGLKAKILTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCCCCHHHHHHHHHHHHH---cCCCEEEEECCCCCHH-HHHHHHHHHh-CCCCCcEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 445555555544433222 4789999999987532 3555666764 4666556444444445667888889888777
Q ss_pred cCCCChHHHhccCCcCccccccccccCCchhhhHHHHHHHHHHHHHhcCCeEEEE--cChHHHHHHHHHHHhc---CCCc
Q psy3753 663 RHDKNINSALHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPAVFAS--SLAAEDMVLTDLILRN---NFDI 737 (928)
Q Consensus 663 ~~~~~~~~~l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~--SGGKDS~vll~L~~~~---~~~i 737 (928)
.-+.+....... ...+.++-.+.+.+.++.+.+..-.+.++. +++-|---++.++.++ +.+
T Consensus 91 ~~~~S~~~~~~~-------------~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~- 156 (262)
T cd07948 91 VFGTSPFLREAS-------------HGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVN- 156 (262)
T ss_pred EEecCHHHHHHH-------------hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCC-
Confidence 555443222221 112344556666667776666533444333 5566655567777663 333
Q ss_pred eEEEEcCC-CChH-HHHHHHHHHHHHcCCeEEE
Q psy3753 738 NIFTLNTG-RLHS-ETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 738 ~vvf~DTg-~efp-eT~~~i~~~~~~~g~~i~~ 768 (928)
.+.+.||. .-.| +++++++.+.+.+++++..
T Consensus 157 ~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~ 189 (262)
T cd07948 157 RVGIADTVGIATPRQVYELVRTLRGVVSCDIEF 189 (262)
T ss_pred EEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 57778885 5555 5888899999998866644
No 166
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=73.82 E-value=3.8 Score=50.62 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCC
Q psy3753 357 NFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLS 402 (928)
Q Consensus 357 r~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~ 402 (928)
-.|+++|++||.+.|.+|+++.+.|++++.++++++.++|.+.|+.
T Consensus 315 p~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~ 360 (781)
T PRK00941 315 TDILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIP 360 (781)
T ss_pred ccHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCC
Confidence 4578999999999999999999999999999999999999987753
No 167
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=69.29 E-value=25 Score=37.48 Aligned_cols=89 Identities=15% Similarity=0.244 Sum_probs=67.6
Q ss_pred hhhcCCCCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchh--------HHHHHHHhcCCceeEeeccc
Q psy3753 572 LKFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYS--------IAYNLRMKFNYTGELRAIGD 643 (928)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~--------~~~~~r~~~~~~g~~~a~~~ 643 (928)
+...+....+.||-|.|+++++.+...|. .+|.+-+..|+ |.|. |..|. .+|.++...||.=.|-+-|.
T Consensus 101 i~~Ik~~G~kaGlalnP~T~~~~l~~~l~-~vD~VLvMsV~-PGf~-GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG 177 (229)
T PRK09722 101 IDEIRRAGMKVGLVLNPETPVESIKYYIH-LLDKITVMTVD-PGFA-GQPFIPEMLDKIAELKALRERNGLEYLIEVDGS 177 (229)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHH-hcCEEEEEEEc-CCCc-chhccHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 33444556789999999999999998883 45777777777 7775 55564 24444445577777888899
Q ss_pred cchhhHHHHHHcCCcceeec
Q psy3753 644 VLQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 644 ~~~d~~~~~~~~g~~~~~~~ 663 (928)
+=.+....+..+|-|.+...
T Consensus 178 I~~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 178 CNQKTYEKLMEAGADVFIVG 197 (229)
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999988775
No 168
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=63.59 E-value=39 Score=35.97 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=65.9
Q ss_pred hhhcCCCCC--ceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchh--------HHHHHHHhcCCceeEeec
Q psy3753 572 LKFNSNNNL--NIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYS--------IAYNLRMKFNYTGELRAI 641 (928)
Q Consensus 572 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~--------~~~~~r~~~~~~g~~~a~ 641 (928)
+...++..- +.||-|.|+++++.+...|. ++|.+-+..|+ |.|. |..|- .+|.+|...||.=.|-.-
T Consensus 109 l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiMtV~-PGfg-GQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVD 185 (228)
T PRK08091 109 IEWLAKQKTTVLIGLCLCPETPISLLEPYLD-QIDLIQILTLD-PRTG-TKAPSDLILDRVIQVENRLGNRRVEKLISID 185 (228)
T ss_pred HHHHHHCCCCceEEEEECCCCCHHHHHHHHh-hcCEEEEEEEC-CCCC-CccccHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 334444445 88999999999999998873 44666666665 5776 66665 344455555777778888
Q ss_pred cccchhhHHHHHHcCCcceeec
Q psy3753 642 GDVLQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 642 ~~~~~d~~~~~~~~g~~~~~~~ 663 (928)
|.+=.+-...+..+|-|.+...
T Consensus 186 GGI~~~ti~~l~~aGaD~~V~G 207 (228)
T PRK08091 186 GSMTLELASYLKQHQIDWVVSG 207 (228)
T ss_pred CCCCHHHHHHHHHCCCCEEEEC
Confidence 9999999999999999977664
No 169
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=61.31 E-value=1e+02 Score=32.73 Aligned_cols=146 Identities=9% Similarity=0.030 Sum_probs=89.5
Q ss_pred chhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCCh--HHHhccCCc-CccccccccccCCchhhhHH
Q psy3753 621 GYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNI--NSALHGLNI-FSEKYQTSADEKIPLNSFVK 697 (928)
Q Consensus 621 ~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~--~~~l~~~~~-~~~~yqps~~~~~~l~~~~~ 697 (928)
|.++|..-|. +|++-.+-.-...-..+..+++.-|-+.+.++.+-+. ..+.+-.+. ...+|=+...++..+.....
T Consensus 62 g~alA~~a~~-~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~ 140 (244)
T cd00640 62 GIALAAAAAR-LGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQGT 140 (244)
T ss_pred HHHHHHHHHH-cCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHH
Confidence 7788888887 6987777655555557777888899877777655221 111111222 22333333233334444445
Q ss_pred HHHHHHHHHHH-hcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCC---ChHHHHHHHHHHHHHcCCeEE
Q psy3753 698 TVLDALNNIVT-DYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGR---LHSETLNMLNKIYLTYKYKIK 767 (928)
Q Consensus 698 ~a~~~I~~~~~-~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~---efpeT~~~i~~~~~~~g~~i~ 767 (928)
.+.+++++.-. ..+.++++.++|--.+-+..-+++..+.+.++-+++.. .-.++.+.++++.++.|+.+.
T Consensus 141 ~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~~~~~v~d~~~~~a~~~l~~~~gi~~~ 214 (244)
T cd00640 141 IGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEPEVVTVSDEEALEAIRLLAREEGILVE 214 (244)
T ss_pred HHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEeeeEEEECHHHHHHHHHHHHHHcCceEC
Confidence 55566665443 23557777766655555555557777888888888743 357788888888888776443
No 170
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=59.91 E-value=2.5e+02 Score=30.95 Aligned_cols=164 Identities=7% Similarity=0.009 Sum_probs=90.0
Q ss_pred eEEeCCCcCHHHHHHHHhcCCCCceEEEEe-------cCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHc
Q psy3753 583 GIWINSDEYSEELKCVLKKNPKQFKVIAIN-------FIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRV 655 (928)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~ 655 (928)
|+.++.++..+-+....+ -++..|++- ||.++| -.-..+.|+++-+ -++.+.-. -...+..+.++
T Consensus 20 ~~~~s~e~k~~ia~~L~~---~Gv~~IEvgsf~~p~~~p~~~d--~~e~~~~l~~~~~--~~~~~l~~-~~~~ie~A~~~ 91 (287)
T PRK05692 20 KRFIPTADKIALIDRLSA---AGLSYIEVASFVSPKWVPQMAD--AAEVMAGIQRRPG--VTYAALTP-NLKGLEAALAA 91 (287)
T ss_pred CCCcCHHHHHHHHHHHHH---cCCCEEEeCCCcCccccccccc--HHHHHHhhhccCC--CeEEEEec-CHHHHHHHHHc
Confidence 555655554443333222 378888886 788776 3455555553212 12222211 23456677888
Q ss_pred CCcceeecCCCChHHHhccCCcCccccccccccCCchhhhHHHHHHHHHHHHHhcCCe--EEEEcChH------HHHHHH
Q psy3753 656 GFNSFVIRHDKNINSALHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPA--VFASSLAA------EDMVLT 727 (928)
Q Consensus 656 g~~~~~~~~~~~~~~~l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~~~--~vs~SGGK------DS~vll 727 (928)
|.|.+.+.-+.+.....+.+ ....++-++...+.|+.+.+....+ .+++++|. |---++
T Consensus 92 g~~~v~i~~~~s~~~~~~n~-------------~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~ 158 (287)
T PRK05692 92 GADEVAVFASASEAFSQKNI-------------NCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVA 158 (287)
T ss_pred CCCEEEEEEecCHHHHHHHh-------------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHH
Confidence 88888776544332222211 1234455566666666665543333 24443332 334556
Q ss_pred HHHHh---cCCCceEEEEcCC-CChH-HHHHHHHHHHHHcC-CeEEE
Q psy3753 728 DLILR---NNFDINIFTLNTG-RLHS-ETLNMLNKIYLTYK-YKIKV 768 (928)
Q Consensus 728 ~L~~~---~~~~i~vvf~DTg-~efp-eT~~~i~~~~~~~g-~~i~~ 768 (928)
.++.+ .+.+ .+.+.||. .-.| ++++.++.+++.++ ++|.+
T Consensus 159 ~~~~~~~~~G~d-~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~ 204 (287)
T PRK05692 159 DVAERLFALGCY-EISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAG 204 (287)
T ss_pred HHHHHHHHcCCc-EEEeccccCccCHHHHHHHHHHHHHhCCCCeEEE
Confidence 66655 3333 56777886 4444 68899999999986 55543
No 171
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=56.98 E-value=14 Score=38.56 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=63.3
Q ss_pred hhcCCCCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchh--------HHHHHHHhcCCceeEeecccc
Q psy3753 573 KFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYS--------IAYNLRMKFNYTGELRAIGDV 644 (928)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~--------~~~~~r~~~~~~g~~~a~~~~ 644 (928)
...++...+.||.|.|+++++.+...| ..+|.+-+..++ |.|+ |..|- .++.++.+.||.-.|-.-|.+
T Consensus 99 ~~ik~~g~k~GialnP~T~~~~~~~~l-~~vD~VlvMsV~-PG~~-Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI 175 (201)
T PF00834_consen 99 KYIKEAGIKAGIALNPETPVEELEPYL-DQVDMVLVMSVE-PGFG-GQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGI 175 (201)
T ss_dssp HHHHHTTSEEEEEE-TTS-GGGGTTTG-CCSSEEEEESS--TTTS-SB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSE
T ss_pred HHHHHhCCCEEEEEECCCCchHHHHHh-hhcCEEEEEEec-CCCC-cccccHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 344445688999999999999998777 355666666666 6775 45543 467777777999999999999
Q ss_pred chhhHHHHHHcCCcceeec
Q psy3753 645 LQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 645 ~~d~~~~~~~~g~~~~~~~ 663 (928)
=.+....+..+|-|.+..-
T Consensus 176 ~~~~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 176 NEENIKQLVEAGADIFVAG 194 (201)
T ss_dssp STTTHHHHHHHT--EEEES
T ss_pred CHHHHHHHHHcCCCEEEEC
Confidence 9999999999999988763
No 172
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=56.95 E-value=60 Score=34.46 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=66.6
Q ss_pred hhhcCCCCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcch--------hHHHHHHHhcCCceeEeeccc
Q psy3753 572 LKFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGY--------SIAYNLRMKFNYTGELRAIGD 643 (928)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~--------~~~~~~r~~~~~~g~~~a~~~ 643 (928)
+...++.+-+.||-|.|+++++.+...| ..+|.+-+..++ |.|. |..| ..++.+|...++.=.|-.-|.
T Consensus 103 l~~Ir~~g~k~GlalnP~T~~~~i~~~l-~~vD~VlvMtV~-PGf~-GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGG 179 (223)
T PRK08745 103 IQLIKSHGCQAGLVLNPATPVDILDWVL-PELDLVLVMSVN-PGFG-GQAFIPSALDKLRAIRKKIDALGKPIRLEIDGG 179 (223)
T ss_pred HHHHHHCCCceeEEeCCCCCHHHHHHHH-hhcCEEEEEEEC-CCCC-CccccHHHHHHHHHHHHHHHhcCCCeeEEEECC
Confidence 3444555679999999999999999887 344666666665 5675 6666 344455555577677888899
Q ss_pred cchhhHHHHHHcCCcceeec
Q psy3753 644 VLQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 644 ~~~d~~~~~~~~g~~~~~~~ 663 (928)
+=.+....+..+|-|.+..-
T Consensus 180 I~~eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 180 VKADNIGAIAAAGADTFVAG 199 (223)
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999988764
No 173
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=54.69 E-value=12 Score=27.73 Aligned_cols=22 Identities=14% Similarity=0.489 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHCCCCCChhh
Q psy3753 852 NWLEKDIWNYINTYNVPYNTLY 873 (928)
Q Consensus 852 dWt~~DVw~Yi~~~~lp~npLY 873 (928)
.||..|.-.||..||+++.+-.
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCC
Confidence 5999999999999999987643
No 174
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=44.42 E-value=60 Score=34.53 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=63.6
Q ss_pred HHhhhcCCCCCceeEEeCCCcCHHHHHHHHh-cCCCCceEEEEecCcccCCcchh-----HHHHHHHhcCCceeEeeccc
Q psy3753 570 KYLKFNSNNNLNIGIWINSDEYSEELKCVLK-KNPKQFKVIAINFIKFTDGRGYS-----IAYNLRMKFNYTGELRAIGD 643 (928)
Q Consensus 570 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~d~r~~~-----~~~~~r~~~~~~g~~~a~~~ 643 (928)
+.++..++.+..+||.+.+.++++.+...+. ...+.+-+..++ |.| ||-.|+ -.+.+|+.++ .-.|-..|.
T Consensus 105 ~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~-pG~-~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGG 181 (228)
T PTZ00170 105 AVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE-PGF-GGQSFMHDMMPKVRELRKRYP-HLNIQVDGG 181 (228)
T ss_pred HHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc-cCC-CCcEecHHHHHHHHHHHHhcc-cCeEEECCC
Confidence 3344444445789999999999999987662 223444444666 666 577775 5566776533 245777799
Q ss_pred cchhhHHHHHHcCCcceeec
Q psy3753 644 VLQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 644 ~~~d~~~~~~~~g~~~~~~~ 663 (928)
+=.+....+..+|-|.+.+-
T Consensus 182 I~~~ti~~~~~aGad~iVvG 201 (228)
T PTZ00170 182 INLETIDIAADAGANVIVAG 201 (228)
T ss_pred CCHHHHHHHHHcCCCEEEEc
Confidence 99999999999999988774
No 175
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=43.30 E-value=1.1e+02 Score=35.11 Aligned_cols=91 Identities=11% Similarity=-0.025 Sum_probs=61.8
Q ss_pred ccccccccCCc--hhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHH--Hhc--CCCceEEEEcCCCChHHHHHH
Q psy3753 681 KYQTSADEKIP--LNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLI--LRN--NFDINIFTLNTGRLHSETLNM 754 (928)
Q Consensus 681 ~yqps~~~~~~--l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~--~~~--~~~i~vvf~DTg~efpeT~~~ 754 (928)
|.+|+....+- ....++.|.+.|...+.--..-++-+|||.+|.-++-.- ... ..+-.-+.. |-.|.|.+.+-
T Consensus 29 fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIt-s~iEH~aVl~~ 107 (386)
T COG1104 29 FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIIT-SAIEHPAVLNT 107 (386)
T ss_pred cCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEE-cccccHHHHHH
Confidence 57787754443 345577777777777764445677789999998655443 221 112223333 77899999999
Q ss_pred HHHHHHHcCCeEEEEecCc
Q psy3753 755 LNKIYLTYKYKIKVYYPLN 773 (928)
Q Consensus 755 i~~~~~~~g~~i~~~~p~~ 773 (928)
++++ ++.|+++..+.++.
T Consensus 108 ~~~L-e~~g~~Vtyl~V~~ 125 (386)
T COG1104 108 CRYL-ERQGFEVTYLPVDS 125 (386)
T ss_pred HHHH-HhcCCeEEEeCCCC
Confidence 9999 89999999886653
No 176
>PRK08005 epimerase; Validated
Probab=43.20 E-value=1.2e+02 Score=31.92 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=63.7
Q ss_pred HhhhcCCCCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchh-----HHHHHHHhcCCceeEeeccccc
Q psy3753 571 YLKFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYS-----IAYNLRMKFNYTGELRAIGDVL 645 (928)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~-----~~~~~r~~~~~~g~~~a~~~~~ 645 (928)
-+...++...+.||-|.|+++++.+...|. .+|.+-+..+ =|.|. |..|- -.+.||+.+. .-.|-+-|.+=
T Consensus 98 ~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV-~PGf~-GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI~ 173 (210)
T PRK08005 98 ILADIRAIGAKAGLALNPATPLLPYRYLAL-QLDALMIMTS-EPDGR-GQQFIAAMCEKVSQSREHFP-AAECWADGGIT 173 (210)
T ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHHHH-hcCEEEEEEe-cCCCc-cceecHHHHHHHHHHHHhcc-cCCEEEECCCC
Confidence 334455567899999999999999998873 4456655555 46775 66665 3455555321 12577889999
Q ss_pred hhhHHHHHHcCCcceeec
Q psy3753 646 QDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 646 ~d~~~~~~~~g~~~~~~~ 663 (928)
.+-...+..+|-|.+..-
T Consensus 174 ~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 174 LRAARLLAAAGAQHLVIG 191 (210)
T ss_pred HHHHHHHHHCCCCEEEEC
Confidence 999999999999977664
No 177
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=41.49 E-value=5.2e+02 Score=28.42 Aligned_cols=142 Identities=9% Similarity=0.041 Sum_probs=76.0
Q ss_pred ceEEEEecCcccCCcchhHHHHHHHhcCC-ceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHhccCCcCcccccc
Q psy3753 606 FKVIAINFIKFTDGRGYSIAYNLRMKFNY-TGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQT 684 (928)
Q Consensus 606 ~~~~~~~~~~~~d~r~~~~~~~~r~~~~~-~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~yqp 684 (928)
+..|++ |+|.. .-+-..+.+..+ ++ .-.+.+..-....-+..+..+|++.+.+.-+.+.....+.+
T Consensus 40 v~~IE~--~s~~~-~d~~~v~~~~~~-~~~~~~v~~~~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~--------- 106 (279)
T cd07947 40 IRQTEF--FLYTE-KDREAVEACLDR-GYKFPEVTGWIRANKEDLKLVKEMGLKETGILMSVSDYHIFKKL--------- 106 (279)
T ss_pred cceEEe--cCcCh-HHHHHHHHHHHc-CCCCCEEEEEecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh---------
Confidence 555554 67755 333333444333 44 23455553333344567778899988876544433333321
Q ss_pred ccccCCchhhhHHHHHHHHHHHHHhcCCeEEEEcChHHH---H----HHHHHHHh---cCCCceEEEEcCC-CChH----
Q psy3753 685 SADEKIPLNSFVKTVLDALNNIVTDYKPAVFASSLAAED---M----VLTDLILR---NNFDINIFTLNTG-RLHS---- 749 (928)
Q Consensus 685 s~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS---~----vll~L~~~---~~~~i~vvf~DTg-~efp---- 749 (928)
....++-++...+.++.+.+..-.+.+++-+...+ . .+..++.. .+.+..+-+.||- .-.|
T Consensus 107 ----~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~ 182 (279)
T cd07947 107 ----KMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGA 182 (279)
T ss_pred ----CcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccc
Confidence 12344555555666665555433555655444444 2 22233222 4545456688885 3333
Q ss_pred ----HHHHHHHHHHHHcCC
Q psy3753 750 ----ETLNMLNKIYLTYKY 764 (928)
Q Consensus 750 ----eT~~~i~~~~~~~g~ 764 (928)
++.+.++.+.+.+++
T Consensus 183 ~~p~~v~~l~~~l~~~~~~ 201 (279)
T cd07947 183 SLPRSVPKIIYGLRKDCGV 201 (279)
T ss_pred cchHHHHHHHHHHHHhcCC
Confidence 578889999888653
No 178
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=40.46 E-value=1.7e+02 Score=32.27 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=76.6
Q ss_pred eEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHh----ccCCcCcccc
Q psy3753 607 KVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSAL----HGLNIFSEKY 682 (928)
Q Consensus 607 ~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l----~~~~~~~~~y 682 (928)
.+|.-.-..+ |.|+|..=|. +|+.-.+---...-..+..+++..|=+-+..+.+.+...+. +.......+|
T Consensus 61 ~vv~aSsGN~----g~alA~~a~~-~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~~~~ 135 (290)
T TIGR01138 61 VLIEATSGNT----GIALAMIAAL-KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGEGKL 135 (290)
T ss_pred EEEEECCChH----HHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCCC
Confidence 4555444444 8888888886 69988886655555677789999997777665532222211 1111111122
Q ss_pred ccccccCC-chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCC
Q psy3753 683 QTSADEKI-PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTG 745 (928)
Q Consensus 683 qps~~~~~-~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg 745 (928)
=+...+.. +..+....+.|++++.-.+.+.++++.++|-=.+-+..-+++..++++|+-+++.
T Consensus 136 ~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~ 199 (290)
T TIGR01138 136 LDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPE 199 (290)
T ss_pred CCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 12122222 2223334555665554223355677765555555555666777889999998874
No 179
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=40.45 E-value=97 Score=27.73 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=52.8
Q ss_pred EeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeec-cccchhhHHHHHHcCCcceeec
Q psy3753 585 WINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAI-GDVLQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 585 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~-~~~~~d~~~~~~~~g~~~~~~~ 663 (928)
.+..-.++.+....+.....++-+|.+.+ .|+.|..+++.||.. +....+-.. .+--.+....+.+.|++.+-..
T Consensus 25 ~v~~~~~~~~~~~~~~~~~~d~iiid~~~---~~~~~~~~~~~i~~~-~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~k 100 (112)
T PF00072_consen 25 EVTTASSGEEALELLKKHPPDLIIIDLEL---PDGDGLELLEQIRQI-NPSIPIIVVTDEDDSDEVQEALRAGADDYLSK 100 (112)
T ss_dssp EEEEESSHHHHHHHHHHSTESEEEEESSS---SSSBHHHHHHHHHHH-TTTSEEEEEESSTSHHHHHHHHHTTESEEEES
T ss_pred EEEEECCHHHHHHHhcccCceEEEEEeee---ccccccccccccccc-cccccEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence 45555667777666644434444444444 457899999999987 555555544 3444566777889999988775
Q ss_pred CCCChHHH
Q psy3753 664 HDKNINSA 671 (928)
Q Consensus 664 ~~~~~~~~ 671 (928)
+- ++...
T Consensus 101 p~-~~~~l 107 (112)
T PF00072_consen 101 PF-SPEEL 107 (112)
T ss_dssp SS-SHHHH
T ss_pred CC-CHHHH
Confidence 43 34433
No 180
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=39.91 E-value=36 Score=34.45 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=41.7
Q ss_pred hCCCcEEecc----CCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccc
Q psy3753 366 YSFSELRVTH----TQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSL 423 (928)
Q Consensus 366 ~g~g~irlT~----~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~ 423 (928)
||.|.|..+. .|++|+.+++.|-++.+ +.+++.|+.+.+...-..++.|.|-.+-..
T Consensus 21 fgrG~vt~v~ds~~iQ~vQ~~g~~~Et~~D~-er~q~yGf~S~ppaGse~vvv~lGG~rShg 81 (203)
T COG4384 21 FGRGKVTLVVDSEGIQNVQLSGLAGETLQDL-ERLQEYGFASVPPAGSEAVVVPLGGKRSHG 81 (203)
T ss_pred hccceEEEEecCCcEEEEEEecCCcchhhhh-HHHHhcCcccCCCCCCeEEEEecCCcccee
Confidence 5667666643 49999999999887774 678899998765543456788888665443
No 181
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=39.29 E-value=1.9e+02 Score=31.80 Aligned_cols=124 Identities=7% Similarity=0.048 Sum_probs=73.2
Q ss_pred chhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCC--ChHHHh----ccCCcC-ccccccccccCCchh
Q psy3753 621 GYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDK--NINSAL----HGLNIF-SEKYQTSADEKIPLN 693 (928)
Q Consensus 621 ~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~--~~~~~l----~~~~~~-~~~yqps~~~~~~l~ 693 (928)
|.++|..-|. +|..-.+---...-.....+++..|-+....+.+. +...+. +..... ..+|-+....+....
T Consensus 65 g~alA~~a~~-~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 143 (291)
T cd01561 65 GIGLAMVAAA-KGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPE 143 (291)
T ss_pred HHHHHHHHHH-cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHH
Confidence 7788888886 68777775555555667778888898877776553 122222 112222 234433333333333
Q ss_pred hhH-HHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCC
Q psy3753 694 SFV-KTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTG 745 (928)
Q Consensus 694 ~~~-~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg 745 (928)
... --+.|++++.-...+.++++.++|-=.+-+..-+++..+++.|+-+++.
T Consensus 144 g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~ 196 (291)
T cd01561 144 AHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPV 196 (291)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 322 3445555554333456777776666655566666777788888888765
No 182
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=38.41 E-value=94 Score=35.38 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHhhccccceeeeecCeeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccC
Q psy3753 10 QLVKERVIQYRDQVRRRLSNELSEEEFIVLRLQNGLYLQRYAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQ 89 (928)
Q Consensus 10 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq 89 (928)
..++++|.+.|+...+.+....++.+|.-+--++|.|. |. -+|++|...|- ++|| |.++.-+
T Consensus 312 ~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFs----y~--------Gls~~QV~rLr---ee~~---IY~v~sG 373 (396)
T COG1448 312 EEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFS----YT--------GLSPEQVDRLR---EEFG---IYLVASG 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceee----cC--------CCCHHHHHHHH---Hhcc---EEEecCC
Confidence 35677777777777777666677777765554455543 21 49999987764 6786 8899999
Q ss_pred ceEEcccCCCChHHHHHHHHHc
Q psy3753 90 NIQFNWIKLKESPDILENLASV 111 (928)
Q Consensus 90 ~iql~gi~~e~~~~~~~~L~~~ 111 (928)
.|-+-|++..+++.+.+.+.++
T Consensus 374 Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 374 RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred eeeeccCChhhHHHHHHHHHhh
Confidence 9999999999999999888654
No 183
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=37.44 E-value=3.2e+02 Score=28.11 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=59.9
Q ss_pred eeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchh----hHHHHHHcCC
Q psy3753 582 IGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQD----QLFYMKRVGF 657 (928)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d----~~~~~~~~g~ 657 (928)
+++|+.+-++...+...|. +++..|++--|-+.. -|....+.||+.++ .-.+-+--|++ | |..++.+.|-
T Consensus 4 ~alD~~~~~~a~~~~~~l~---~~v~~iev~~~l~~~-~g~~~i~~l~~~~~-~~~i~~d~k~~-d~~~~~~~~~~~~Ga 77 (206)
T TIGR03128 4 LALDLLDIEEALELAEKVA---DYVDIIEIGTPLIKN-EGIEAVKEMKEAFP-DRKVLADLKTM-DAGEYEAEQAFAAGA 77 (206)
T ss_pred EEecCCCHHHHHHHHHHcc---cCeeEEEeCCHHHHH-hCHHHHHHHHHHCC-CCEEEEEEeec-cchHHHHHHHHHcCC
Confidence 5677777777777766663 578888884333333 28899999998643 11343433444 4 7888999999
Q ss_pred cceeecCCCC---hHHHhccCCcCccccccc
Q psy3753 658 NSFVIRHDKN---INSALHGLNIFSEKYQTS 685 (928)
Q Consensus 658 ~~~~~~~~~~---~~~~l~~~~~~~~~yqps 685 (928)
|.+.+.-..+ +...++.+........+.
T Consensus 78 d~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 78 DIVTVLGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred CEEEEeccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 9886544332 344444444444444443
No 184
>PRK09389 (R)-citramalate synthase; Provisional
Probab=36.97 E-value=8e+02 Score=29.32 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=88.4
Q ss_pred CceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHhccCCcCcccccc
Q psy3753 605 QFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQT 684 (928)
Q Consensus 605 ~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~yqp 684 (928)
++..|++-||.... .-|-..+.+.++ +..-+|-+.+.-..+-...+..+|.+.+.+--+.+.......
T Consensus 37 Gv~~IE~G~p~~~~-~d~e~v~~i~~~-~~~~~i~a~~r~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~---------- 104 (488)
T PRK09389 37 GVDVIEAGSAITSE-GEREAIKAVTDE-GLNAEICSFARAVKVDIDAALECDVDSVHLVVPTSDLHIEYK---------- 104 (488)
T ss_pred CCCEEEEeCCcCCH-HHHHHHHHHHhc-CCCcEEEeecccCHHHHHHHHhCCcCEEEEEEccCHHHHHHH----------
Confidence 78999999997643 236666777764 666677666665555567777888887766554433222221
Q ss_pred ccccCCchhhhHHHHHHHHHHHHHhcCCeEEEE--cChHHHHHHHHHHHh---cCCCceEEEEcCC-CChH-HHHHHHHH
Q psy3753 685 SADEKIPLNSFVKTVLDALNNIVTDYKPAVFAS--SLAAEDMVLTDLILR---NNFDINIFTLNTG-RLHS-ETLNMLNK 757 (928)
Q Consensus 685 s~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~--SGGKDS~vll~L~~~---~~~~i~vvf~DTg-~efp-eT~~~i~~ 757 (928)
.....++-++.+.+.++.+.+....+.++. ++-.|---++.++.. .+.+ .+.+.||. .-.| ++.++++.
T Consensus 105 ---l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~-~i~l~DTvG~~~P~~~~~lv~~ 180 (488)
T PRK09389 105 ---LKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGAD-RICFCDTVGILTPEKTYELFKR 180 (488)
T ss_pred ---hCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCC-EEEEecCCCCcCHHHHHHHHHH
Confidence 112344556666677766655332333333 223344445555544 3433 47788984 5555 57788888
Q ss_pred HHHHcCCeEEE
Q psy3753 758 IYLTYKYKIKV 768 (928)
Q Consensus 758 ~~~~~g~~i~~ 768 (928)
+.+..++++.+
T Consensus 181 l~~~~~v~l~~ 191 (488)
T PRK09389 181 LSELVKGPVSI 191 (488)
T ss_pred HHhhcCCeEEE
Confidence 88887765543
No 185
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=35.12 E-value=6.1e+02 Score=27.42 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=84.2
Q ss_pred CCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcC----CcceeecCCCChHHHhccCCcCc
Q psy3753 604 KQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVG----FNSFVIRHDKNINSALHGLNIFS 679 (928)
Q Consensus 604 ~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g----~~~~~~~~~~~~~~~l~~~~~~~ 679 (928)
-++..|++-||.... .-|-..+.++.+ ...-++.+...--..-...+.++| ++.+.+-.+.+.....+.+
T Consensus 32 ~Gv~~iEvg~~~~~~-~~~~~~~~l~~~-~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~---- 105 (268)
T cd07940 32 LGVDVIEAGFPAASP-GDFEAVKRIARE-VLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL---- 105 (268)
T ss_pred cCCCEEEEeCCCCCH-HHHHHHHHHHHh-CCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh----
Confidence 478889998887421 246677777764 333444443322233344555566 7766665443322222211
Q ss_pred cccccccccCCchhhhHHHHHHHHHHHHHhcCCeEEE--EcChHHHHHHHHHHHhc---CCCceEEEEcCC-CChH-HHH
Q psy3753 680 EKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPAVFA--SSLAAEDMVLTDLILRN---NFDINIFTLNTG-RLHS-ETL 752 (928)
Q Consensus 680 ~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs--~SGGKDS~vll~L~~~~---~~~i~vvf~DTg-~efp-eT~ 752 (928)
..+.++-++.+.+.++.+.+..-.+.++ .++.-|---++.++.+. +. -.+.+.||. .-.| +++
T Consensus 106 ---------~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~ 175 (268)
T cd07940 106 ---------KKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGA-TTINIPDTVGYLTPEEFG 175 (268)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCC-CEEEECCCCCCCCHHHHH
Confidence 1223344566667777666654344444 34445555666666553 33 357778985 4455 688
Q ss_pred HHHHHHHHHcC---CeEEE
Q psy3753 753 NMLNKIYLTYK---YKIKV 768 (928)
Q Consensus 753 ~~i~~~~~~~g---~~i~~ 768 (928)
++++.+.+.++ +++..
T Consensus 176 ~lv~~l~~~~~~~~i~l~~ 194 (268)
T cd07940 176 ELIKKLKENVPNIKVPISV 194 (268)
T ss_pred HHHHHHHHhCCCCceeEEE
Confidence 99999999887 45443
No 186
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=33.14 E-value=2.2e+02 Score=28.44 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=59.9
Q ss_pred CCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccch
Q psy3753 349 GDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKS 428 (928)
Q Consensus 349 G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt 428 (928)
|.++.+.++.||+.. +++..++..+..--.. |.+.+.| ...+..|.|. .|.. ..+
T Consensus 37 G~Ip~e~~~~iA~~l-------------------~v~~~~V~~vatFY~~--f~~~p~G-k~~I~VC~~~-~C~~--~G~ 91 (156)
T PRK05988 37 GYVPEDAVPVIAEAL-------------------NLSRAEVHGVITFYHD--FRTHPPG-RHVLKLCRAE-ACQA--MGG 91 (156)
T ss_pred CCCCHHHHHHHHHHh-------------------CCCHHHHHHHHHHhhc--cCCCCCC-CEEEEEeCCc-hhhc--CCH
Confidence 889999898888752 4555555555544332 2222322 4457789886 6653 356
Q ss_pred HHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCccc
Q psy3753 429 LPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHH 464 (928)
Q Consensus 429 ~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~ 464 (928)
..+...|.+.+. +.....-++|.+.-+.|-..|..+
T Consensus 92 ~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~a 129 (156)
T PRK05988 92 DALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACS 129 (156)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCC
Confidence 788999999886 221122358999999999999754
No 187
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=32.14 E-value=1.6e+02 Score=28.80 Aligned_cols=116 Identities=17% Similarity=0.359 Sum_probs=68.4
Q ss_pred CCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccch
Q psy3753 349 GDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKS 428 (928)
Q Consensus 349 G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt 428 (928)
|.++.+.++.+|+.. +++..++..+..--. -|...+.+ ...+..|.|. .|... -+
T Consensus 27 g~i~~~~~~~iA~~l-------------------~i~~~~v~~v~tFY~--~f~~~p~g-k~~I~VC~g~-~C~~~--Ga 81 (145)
T PF01257_consen 27 GYIPEEALEEIAEAL-------------------GIPPAEVYGVATFYS--MFRLEPKG-KHHIRVCTGT-SCHLR--GA 81 (145)
T ss_dssp SS--HHHHHHHHHHH-------------------TS-HHHHHHHHHHSS--SS-SSS---SEEEEEE-SH-HHHTT--TH
T ss_pred CCCCHHHHHHHHHHH-------------------CCCHHHHHHHHHHHH--HcccCCCC-CcEEEeCCCc-hHHhC--CC
Confidence 888888888888753 345544444433221 22233322 4578999987 57543 56
Q ss_pred HHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCc
Q psy3753 429 LPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSA 506 (928)
Q Consensus 429 ~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~ 506 (928)
.++...|.+.+. +......++|.+.-++|-..|... . .+.|+|. +...+++
T Consensus 82 ~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~ClG~C~~a---P--------------~v~V~~~----------~y~~vt~ 134 (145)
T PF01257_consen 82 EELLEALEEELGIKPGETTEDGKFTLEETGCLGACDQA---P--------------VVMVDGE----------WYGNVTP 134 (145)
T ss_dssp HHHHHHHHHHHCTSCCCCSTTTTEEEEEESSSSSGGGS---S--------------EEEECCC----------EEESSSC
T ss_pred HHHHHHHHHHhCCcccccCCCceEEEEECCCccccCCC---C--------------EEEECCE----------EECCCCH
Confidence 788888988885 222223358999999999999643 1 2344442 1124678
Q ss_pred ccHHHHHHHH
Q psy3753 507 DQVPDIINRI 516 (928)
Q Consensus 507 ~e~~~~i~~l 516 (928)
+++.++++++
T Consensus 135 e~v~~il~~l 144 (145)
T PF01257_consen 135 EKVDEILEEL 144 (145)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888887764
No 188
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=29.86 E-value=2.5e+02 Score=27.82 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=59.2
Q ss_pred CCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccch
Q psy3753 349 GDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKS 428 (928)
Q Consensus 349 G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt 428 (928)
|.++.+.++.+|+.. +++..++..+..--.. |.+.+.| ...+..|.|. .|... .+
T Consensus 36 g~ip~~~~~~iA~~l-------------------~v~~~~v~~v~tFY~~--f~~~p~g-k~~I~VC~g~-~C~~~--Ga 90 (154)
T PRK07539 36 GWVPDEAIEAVADYL-------------------GMPAIDVEEVATFYSM--IFRQPVG-RHVIQVCTST-PCWLR--GG 90 (154)
T ss_pred CCCCHHHHHHHHHHh-------------------CcCHHHHHHHHHHHhh--hCcCCCC-CEEEEEcCCc-hHHHC--CH
Confidence 888888888888752 4555556665554433 2233333 4467799986 56533 46
Q ss_pred HHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCccc
Q psy3753 429 LPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHH 464 (928)
Q Consensus 429 ~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~ 464 (928)
.++...|.+++. .......++|.+.-++|-..|...
T Consensus 91 ~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~g 128 (154)
T PRK07539 91 EAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNA 128 (154)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCC
Confidence 788888888875 111112347899999999999854
No 189
>PRK14057 epimerase; Provisional
Probab=29.16 E-value=2.6e+02 Score=30.27 Aligned_cols=80 Identities=18% Similarity=0.105 Sum_probs=59.5
Q ss_pred ceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchh--------HHHHHHHhcCCceeEeeccccchhhHHHH
Q psy3753 581 NIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYS--------IAYNLRMKFNYTGELRAIGDVLQDQLFYM 652 (928)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~--------~~~~~r~~~~~~g~~~a~~~~~~d~~~~~ 652 (928)
+.||-|.|+++++.+...| .++|-+-+..|+ |.|. |..|. .+|.+|...||.=.|-+-|.+=.+....+
T Consensus 134 kaGlAlnP~Tp~e~i~~~l-~~vD~VLvMtV~-PGfg-GQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l 210 (254)
T PRK14057 134 IRGISLCPATPLDVIIPIL-SDVEVIQLLAVN-PGYG-SKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSL 210 (254)
T ss_pred eeEEEECCCCCHHHHHHHH-HhCCEEEEEEEC-CCCC-chhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHH
Confidence 5899999999999999988 344555555664 5775 66664 34444444566656778899999999999
Q ss_pred HHcCCcceeec
Q psy3753 653 KRVGFNSFVIR 663 (928)
Q Consensus 653 ~~~g~~~~~~~ 663 (928)
..+|-|.+..-
T Consensus 211 ~~aGad~~V~G 221 (254)
T PRK14057 211 IAQGIDRVVSG 221 (254)
T ss_pred HHCCCCEEEEC
Confidence 99999987764
No 190
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=28.64 E-value=2.2e+02 Score=26.56 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=48.3
Q ss_pred EeeccccchhhHHHHHHcCCcceeecCCC--C---h--HHH--hccCCcCccccccccccCCchhhhHHHHHHHHHHHHH
Q psy3753 638 LRAIGDVLQDQLFYMKRVGFNSFVIRHDK--N---I--NSA--LHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVT 708 (928)
Q Consensus 638 ~~a~~~~~~d~~~~~~~~g~~~~~~~~~~--~---~--~~~--l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~ 708 (928)
+-..|.+-+++...+.+.||.++.=-.+. . + ... .+.--....+|.|.....+ .++.++.+..+++
T Consensus 9 ~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~-----~~~~v~~f~~~l~ 83 (110)
T PF04273_consen 9 LSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAI-----TEEDVEAFADALE 83 (110)
T ss_dssp EEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHHHHHHHHH
T ss_pred eEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCC-----CHHHHHHHHHHHH
Confidence 55567888899999999999998644322 1 1 111 1223366677888775443 3444555566666
Q ss_pred hcC-CeEEEEcChHHHHHHHHHHHh
Q psy3753 709 DYK-PAVFASSLAAEDMVLTDLILR 732 (928)
Q Consensus 709 ~~~-~~~vs~SGGKDS~vll~L~~~ 732 (928)
..+ ++++-+--|.-|++|..|...
T Consensus 84 ~~~~Pvl~hC~sG~Ra~~l~~l~~~ 108 (110)
T PF04273_consen 84 SLPKPVLAHCRSGTRASALWALAQA 108 (110)
T ss_dssp TTTTSEEEE-SCSHHHHHHHHHHHH
T ss_pred hCCCCEEEECCCChhHHHHHHHHhh
Confidence 554 666666668899998877643
No 191
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=28.59 E-value=2.8e+02 Score=27.32 Aligned_cols=91 Identities=16% Similarity=0.312 Sum_probs=59.2
Q ss_pred CCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccch
Q psy3753 349 GDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKS 428 (928)
Q Consensus 349 G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt 428 (928)
|.++.+.++.+|+. .|++..++..+..--.. |.+.+.| ...+..|.|. .|... -+
T Consensus 30 G~i~~~~~~~iA~~-------------------l~~~~~~v~~v~tFY~~--f~~~p~g-k~~I~VC~g~-~C~~~--Ga 84 (148)
T TIGR01958 30 GWVTPEAIAAVAEM-------------------LGIPPVWVYEVATFYSM--FDTEPVG-RYHLQVCTNV-PCALR--GS 84 (148)
T ss_pred CCCCHHHHHHHHHH-------------------hCcCHHHHHHHHhHHhh--cCcCCCC-CEEEEEcCCc-hhhhc--CH
Confidence 88888888888874 24555566665554433 3333333 3468899986 46533 46
Q ss_pred HHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCccc
Q psy3753 429 LPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHH 464 (928)
Q Consensus 429 ~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~ 464 (928)
.++...|.+.+. +......++|.+.-++|-..|...
T Consensus 85 ~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~a 122 (148)
T TIGR01958 85 EALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNA 122 (148)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCC
Confidence 788888888876 111122347999999999999744
No 192
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=27.66 E-value=8.3e+02 Score=26.64 Aligned_cols=146 Identities=8% Similarity=0.031 Sum_probs=78.7
Q ss_pred CCceEEEEe-------cCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHhccCC
Q psy3753 604 KQFKVIAIN-------FIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLN 676 (928)
Q Consensus 604 ~~~~~~~~~-------~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 676 (928)
-++..|++- ||.++|=- . ..+.+...-+ -++-+.... ......+.++|.+.+.+.-+.+.....+.++
T Consensus 32 ~Gv~~IEvGs~~~~~~~p~~~d~~-~-~~~~l~~~~~--~~~~~~~~~-~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~ 106 (274)
T cd07938 32 AGLRRIEVTSFVSPKWVPQMADAE-E-VLAGLPRRPG--VRYSALVPN-LRGAERALAAGVDEVAVFVSASETFSQKNIN 106 (274)
T ss_pred cCCCEEEeCCCCCcccccccCCHH-H-HHhhcccCCC--CEEEEECCC-HHHHHHHHHcCcCEEEEEEecCHHHHHHHcC
Confidence 378888887 78887622 2 1222221111 123222211 2346677888888777765554322222221
Q ss_pred cCccccccccccCCchhhhHHHHHHHHHHHHHhcCCe--EEEEcCh------HHHHHHHHHHHh---cCCCceEEEEcCC
Q psy3753 677 IFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPA--VFASSLA------AEDMVLTDLILR---NNFDINIFTLNTG 745 (928)
Q Consensus 677 ~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~~~--~vs~SGG------KDS~vll~L~~~---~~~~i~vvf~DTg 745 (928)
....+.++.+.+.++.+.+....+ .++.++| .|---++.++.+ .+.+ .+.+.||.
T Consensus 107 -------------~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~-~i~l~DT~ 172 (274)
T cd07938 107 -------------CSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCD-EISLGDTI 172 (274)
T ss_pred -------------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCC-EEEECCCC
Confidence 234566677777777776654333 2343343 122334455444 3332 46677885
Q ss_pred -CChH-HHHHHHHHHHHHcC-CeEEE
Q psy3753 746 -RLHS-ETLNMLNKIYLTYK-YKIKV 768 (928)
Q Consensus 746 -~efp-eT~~~i~~~~~~~g-~~i~~ 768 (928)
.-.| +++++++.+.++++ +++.+
T Consensus 173 G~~~P~~v~~lv~~l~~~~~~~~i~~ 198 (274)
T cd07938 173 GVATPAQVRRLLEAVLERFPDEKLAL 198 (274)
T ss_pred CccCHHHHHHHHHHHHHHCCCCeEEE
Confidence 4444 68899999999885 55544
No 193
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=26.98 E-value=24 Score=28.63 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=41.3
Q ss_pred cCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCcccccc
Q psy3753 63 LSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTS 119 (928)
Q Consensus 63 lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~ 119 (928)
||+.|+..|..|...-+. .+|..+=-+..+++...+-.+++.|.+.|+.....+
T Consensus 3 lt~~q~~vL~~l~~~~~~---~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~ 56 (62)
T PF12802_consen 3 LTPSQFRVLMALARHPGE---ELTQSELAERLGISKSTVSRIVKRLEKKGLVERERD 56 (62)
T ss_dssp STHHHHHHHHHHHHSTTS---GEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-
T ss_pred cCHHHHHHHHHHHHCCCC---CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 799999999999876543 445555556678999999999999999999765443
No 194
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=26.64 E-value=1.7e+02 Score=28.97 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=42.5
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHH---cCCeEEEEec
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLT---YKYKIKVYYP 771 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~---~g~~i~~~~p 771 (928)
++++|++|-|+-..-++.++..- .++.+|.-++|.+-+.|.++=+++++. .|.++..-.-
T Consensus 29 k~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 29 KHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred ceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 47999999999888887776554 567788888898777666665555544 3666665433
No 195
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.42 E-value=8.7e+02 Score=26.45 Aligned_cols=155 Identities=13% Similarity=0.062 Sum_probs=82.9
Q ss_pred eeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCc-------ccCCcchhHHHHHHHhcCCceeEeeccc-----------
Q psy3753 582 IGIWINSDEYSEELKCVLKKNPKQFKVIAINFIK-------FTDGRGYSIAYNLRMKFNYTGELRAIGD----------- 643 (928)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~d~r~~~~~~~~r~~~~~~g~~~a~~~----------- 643 (928)
.|+.+..++...-. ..|. .-++..|++-+|+ |..---+...+.+++. .=.-+|.+...
T Consensus 14 ~~~~~~~~~~~~ia-~~L~--~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~-~~~~~l~~~~r~~~~~~~~~~p 89 (275)
T cd07937 14 LATRMRTEDMLPIA-EALD--EAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA-MPNTPLQMLLRGQNLVGYRHYP 89 (275)
T ss_pred hceeccHHHHHHHH-HHHH--HcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh-CCCCceehhcccccccCccCCC
Confidence 46677766555543 3331 1378899999987 2222345566666654 21222322111
Q ss_pred --cchhhHHHHHHcCCcceeecCCCChHHHhccCCcCccccccccccCCchhhhHHHHHHHHHHHHHhcCCeE--EEE--
Q psy3753 644 --VLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPAV--FAS-- 717 (928)
Q Consensus 644 --~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~--vs~-- 717 (928)
+..+-..++..+|.+.+.+....+. ++.+.+.++.+.+....+. +++
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~~~~~---------------------------~~~~~~~i~~ak~~G~~v~~~i~~~~ 142 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFDALND---------------------------VRNLEVAIKAVKKAGKHVEGAICYTG 142 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeecCCh---------------------------HHHHHHHHHHHHHCCCeEEEEEEecC
Confidence 1223333444455554444322211 3566666666655433333 332
Q ss_pred cChHHHHHHHHHHHhc---CCCceEEEEcCC-CChH-HHHHHHHHHHHHcCCeEEE
Q psy3753 718 SLAAEDMVLTDLILRN---NFDINIFTLNTG-RLHS-ETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 718 SGGKDS~vll~L~~~~---~~~i~vvf~DTg-~efp-eT~~~i~~~~~~~g~~i~~ 768 (928)
++..|-.-++.++.++ +.+ .+.+.||. .-.| ++.+.++.+++.+++++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga~-~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~ 197 (275)
T cd07937 143 SPVHTLEYYVKLAKELEDMGAD-SICIKDMAGLLTPYAAYELVKALKKEVGLPIHL 197 (275)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 4445555666666553 333 46777885 4555 6888999999998866654
No 196
>KOG0373|consensus
Probab=25.78 E-value=2.6e+02 Score=29.36 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=62.5
Q ss_pred HHHHHHhcC--CCceEEE----EcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCCC----Cccchhhh
Q psy3753 726 LTDLILRNN--FDINIFT----LNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINA----FYDSVQMR 795 (928)
Q Consensus 726 ll~L~~~~~--~~i~vvf----~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~~----~~~~~~~~ 795 (928)
|+.|.+.-+ |+...+| +|-|+-.=||..++=-+..+|+-+|...+....+ +++..-+|... -+.....-
T Consensus 61 L~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEs-RqitqVYGFydECq~KYGnan~w 139 (306)
T KOG0373|consen 61 LLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHES-RQITQVYGFYDECQNKYGNANVW 139 (306)
T ss_pred HHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchh-hhhhhhhhhHHHHHhhcCCchHH
Confidence 455555533 6776665 5889999999999988999999999988765443 33333343200 00111235
Q ss_pred hhhhhhcccchHHHhhcCCcEEEee
Q psy3753 796 KKCCYIRKVKPLKKALIGNKSWITG 820 (928)
Q Consensus 796 ~~Cc~~~K~~Pl~~~l~~~~~~i~G 820 (928)
++||++.-.-++...+.+..+++-|
T Consensus 140 kycckVFD~LtlaAiID~~vLCVHG 164 (306)
T KOG0373|consen 140 KYCCKVFDFLTLAAIIDEKVLCVHG 164 (306)
T ss_pred HHHHHHHhhhhHHHHhcCcEEEEcC
Confidence 7899999999998888776655544
No 197
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=24.88 E-value=4.1e+02 Score=27.08 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=54.0
Q ss_pred CCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCc-----chhHHHHHHHhcCCceeEeeccccchhhHHHH
Q psy3753 578 NNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGR-----GYSIAYNLRMKFNYTGELRAIGDVLQDQLFYM 652 (928)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r-----~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~ 652 (928)
++-++++++..-.++.++...+. ..+..|.+ ||.|..+. ++...+.++.. +.=.+-+.|.+=.|+...+
T Consensus 102 ~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~-~~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~GGI~~~~i~~~ 175 (202)
T cd04726 102 YGKEVQVDLIGVEDPEKRAKLLK---LGVDIVIL-HRGIDAQAAGGWWPEDDLKKVKKL--LGVKVAVAGGITPDTLPEF 175 (202)
T ss_pred cCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEE-cCcccccccCCCCCHHHHHHHHhh--cCCCEEEECCcCHHHHHHH
Confidence 45688887444445555544442 25556655 56554333 35566666643 3345889999999999999
Q ss_pred HHcCCcceeecCC
Q psy3753 653 KRVGFNSFVIRHD 665 (928)
Q Consensus 653 ~~~g~~~~~~~~~ 665 (928)
...|.|.+.+...
T Consensus 176 ~~~Gad~vvvGsa 188 (202)
T cd04726 176 KKAGADIVIVGRA 188 (202)
T ss_pred HhcCCCEEEEeeh
Confidence 9999999887654
No 198
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=24.86 E-value=3.9e+02 Score=28.19 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=62.0
Q ss_pred hhhcCCCCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcch-----hHHHHHHH---hcCCceeEeeccc
Q psy3753 572 LKFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGY-----SIAYNLRM---KFNYTGELRAIGD 643 (928)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~-----~~~~~~r~---~~~~~g~~~a~~~ 643 (928)
+...++..-+.||-|.|++.++.+...| ..+|.+-+..++ |.|. |-.| .-.+.+|+ ..||.=.+-+-|.
T Consensus 99 l~~ik~~g~k~GlalnP~Tp~~~i~~~l-~~~D~vlvMtV~-PGfg-Gq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGG 175 (220)
T PRK08883 99 LQLIKEHGCQAGVVLNPATPLHHLEYIM-DKVDLILLMSVN-PGFG-GQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGG 175 (220)
T ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHHHH-HhCCeEEEEEec-CCCC-CceecHhHHHHHHHHHHHHHhcCCCeeEEEECC
Confidence 3344555678999999999999999887 334555555554 4663 3223 23444443 3355556778899
Q ss_pred cchhhHHHHHHcCCcceeec
Q psy3753 644 VLQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 644 ~~~d~~~~~~~~g~~~~~~~ 663 (928)
+=.+-...+..+|-|.+.+-
T Consensus 176 I~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 176 VKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 99999999999999988774
No 199
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=23.91 E-value=5e+02 Score=28.91 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=55.9
Q ss_pred CchhhhHHHHHHHHHHHH--HhcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChH----HHHHHHHHHHHHcC
Q psy3753 690 IPLNSFVKTVLDALNNIV--TDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHS----ETLNMLNKIYLTYK 763 (928)
Q Consensus 690 ~~l~~~~~~a~~~I~~~~--~~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efp----eT~~~i~~~~~~~g 763 (928)
+---..++.+.|+..+.- -+++.++++.|+|--..-+++=+...+++++|+-+|....-+ .....++.+++.++
T Consensus 159 ~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~ 238 (323)
T COG2515 159 LGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLG 238 (323)
T ss_pred cccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcC
Confidence 334456788888888877 467888888877777777777777788999999998876544 45555666666687
Q ss_pred Ce
Q psy3753 764 YK 765 (928)
Q Consensus 764 ~~ 765 (928)
+.
T Consensus 239 ~~ 240 (323)
T COG2515 239 LG 240 (323)
T ss_pred CC
Confidence 65
No 200
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=23.81 E-value=75 Score=32.25 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=32.4
Q ss_pred HhCCCeEecc----ccCceEEcccCCCChHHHHHHHHHcCCccccccC
Q psy3753 77 KYDRNYGHFT----TRQNIQFNWIKLKESPDILENLASVEMHAIQTSG 120 (928)
Q Consensus 77 ~yg~g~i~lT----tRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~g 120 (928)
-||.|.+-++ .+||+||.|.+.|.+.+ ++.|++.|+.+.-..|
T Consensus 20 lfgrG~vt~v~ds~~iQ~vQ~~g~~~Et~~D-~er~q~yGf~S~ppaG 66 (203)
T COG4384 20 LFGRGKVTLVVDSEGIQNVQLSGLAGETLQD-LERLQEYGFASVPPAG 66 (203)
T ss_pred HhccceEEEEecCCcEEEEEEecCCcchhhh-hHHHHhcCcccCCCCC
Confidence 4778877665 58999999998887665 5678999997654444
No 201
>KOG1706|consensus
Probab=23.57 E-value=1.5e+02 Score=32.64 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=33.1
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGR 746 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~ 746 (928)
+.+++++|||-|-.++|-.+.+.+-++..+-.|.|.
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ 41 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQ 41 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcCceEEEeeccccc
Confidence 568899999999999999999999999999999997
No 202
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.52 E-value=1.4e+02 Score=30.14 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=42.1
Q ss_pred CCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeecc------ccchhhHHHHHHcCCcceeecCCCCh
Q psy3753 604 KQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIG------DVLQDQLFYMKRVGFNSFVIRHDKNI 668 (928)
Q Consensus 604 ~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~------~~~~d~~~~~~~~g~~~~~~~~~~~~ 668 (928)
..-.++.+.=|.=.=|.||..||.|+.+ ||+=.+...+ .....|+..+..+|...+...+..+.
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 93 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANR-GYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDL 93 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHT-TCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGG
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHC-CCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchh
Confidence 3445555555555567899999999975 9986653232 34457888999999887776555543
No 203
>PRK11761 cysM cysteine synthase B; Provisional
Probab=22.23 E-value=4.2e+02 Score=29.25 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=78.3
Q ss_pred ceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHhcc---C-CcCccc
Q psy3753 606 FKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHG---L-NIFSEK 681 (928)
Q Consensus 606 ~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~---~-~~~~~~ 681 (928)
-.+|.-.=..+ |.++|..=+. +|++-.+----.+=......++..|=+.+..+...+...+.+. + ..-..+
T Consensus 64 ~~vv~aSsGN~----g~alA~~a~~-~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~ 138 (296)
T PRK11761 64 DTLIEATSGNT----GIALAMIAAI-KGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEGEGK 138 (296)
T ss_pred CEEEEeCCChH----HHHHHHHHHH-cCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhccCCE
Confidence 44565444444 8888888886 6988888555444446667888889888777753333333211 1 111222
Q ss_pred cccccccCC-chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCC
Q psy3753 682 YQTSADEKI-PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTG 745 (928)
Q Consensus 682 yqps~~~~~-~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg 745 (928)
|=+...+.. +..+..-.+.|++++.-...+.++++.++|-=-+-+..-+++..++++|+-+++.
T Consensus 139 ~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~ 203 (296)
T PRK11761 139 VLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPE 203 (296)
T ss_pred ecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 322222222 2223334445555554223455777776666666666677778888999888884
No 204
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.18 E-value=7e+02 Score=25.15 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=32.5
Q ss_pred eeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHH
Q psy3753 330 KINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTE 395 (928)
Q Consensus 330 k~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~ 395 (928)
+.+|.-++||+++- -+ +-..|.||++-||. -+.+-...-|.|.| ..+++...+.+
T Consensus 108 ~p~~~~~iRv~l~~------~i---~~erl~ei~E~~gv-I~Efee~~~V~I~G-dke~Ik~aLKe 162 (169)
T PF09869_consen 108 APPGFETIRVKLKK------PI---QEERLQEISEWHGV-IFEFEEDDKVVIEG-DKERIKKALKE 162 (169)
T ss_pred CCCCceeEEEecCc------cc---hHHHHHHHHHHhce-eEEecCCcEEEEec-cHHHHHHHHHH
Confidence 44678889998864 33 45566777777874 56664444466655 33344443333
No 205
>PLN02970 serine racemase
Probab=21.01 E-value=5.9e+02 Score=28.52 Aligned_cols=124 Identities=6% Similarity=-0.085 Sum_probs=69.7
Q ss_pred chhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChH-HHhcc-CCcCccccccccccCCchhhhHHH
Q psy3753 621 GYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNIN-SALHG-LNIFSEKYQTSADEKIPLNSFVKT 698 (928)
Q Consensus 621 ~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~-~~l~~-~~~~~~~yqps~~~~~~l~~~~~~ 698 (928)
|.++|..=+. +||.-.+----..-.....+++..|=+-+..+.+.+.. .+.+. .+....+|=+...++......--.
T Consensus 87 g~alA~~a~~-~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~la~~~g~~~~~~~~n~~~~~g~~t~ 165 (328)
T PLN02970 87 AAALALAAKL-RGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPTVESREAVAARVQQETGAVLIHPYNDGRVISGQGTI 165 (328)
T ss_pred HHHHHHHHHH-cCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhhehHHH
Confidence 7777777775 58877775444444455667788887666655433211 11111 112222332233333334433234
Q ss_pred HHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCC
Q psy3753 699 VLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGR 746 (928)
Q Consensus 699 a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~ 746 (928)
+.|++++.- .-+.++++.++|-=-+-+..-+++.+++++|+-++...
T Consensus 166 g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 166 ALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred HHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 555555542 23567777766655555666667788889999988754
No 206
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=2.7e+02 Score=24.96 Aligned_cols=53 Identities=11% Similarity=0.245 Sum_probs=41.5
Q ss_pred CCcCHHHHHHHHHHHHHhCCC----cE--EeccCCC-----EEEccCCcCCHHHHHHHHHHCCC
Q psy3753 349 GDITSEQMNFIANLADHYSFS----EL--RVTHTQN-----IVLSDVTKDNLFNLWTEIKQYGL 401 (928)
Q Consensus 349 G~l~~~qlr~La~ia~~~g~g----~i--rlT~~q~-----i~l~gi~~~~~~~~~~~L~~~Gl 401 (928)
|..-++-...+.++.++|+-| .+ +-++.+| |.|.-.+.|+++.+..+|.+.+.
T Consensus 22 G~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~~~~ 85 (90)
T COG2921 22 GAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRKHEI 85 (90)
T ss_pred cccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhhCCc
Confidence 677777788889999999854 34 5566666 77788888999999999987654
No 207
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=1.2e+02 Score=28.99 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=41.8
Q ss_pred CceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcCC
Q psy3753 164 RKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRR 243 (928)
Q Consensus 164 ~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r 243 (928)
.+--++++|||-.|+.--+.--|+.+.. .+.+- -+| +.+.-...+++|++..++..+.+...-..+|
T Consensus 67 grrIlalDGCp~~Catk~l~~AGv~~D~--------~l~it-dlG----ikK~~~~D~~~edv~kv~~~i~e~l~~~~~~ 133 (135)
T COG4273 67 GRRILALDGCPLRCATKCLAEAGVQADV--------HLTIT-DLG----IKKTYPSDCKDEDVEKVARTIKEALTIKLNR 133 (135)
T ss_pred CCceEEecCChHHHHHHHHHHhccceeE--------EEEeh-hcc----cccCCCCCCCHHHHHHHHHHHHHHhhhcccc
Confidence 3446899999999987665555555422 12211 011 1122235689999999999999887655543
No 208
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=20.74 E-value=4e+02 Score=27.72 Aligned_cols=95 Identities=9% Similarity=0.101 Sum_probs=55.2
Q ss_pred ceeEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHH-HHHcCCcc
Q psy3753 581 NIGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFY-MKRVGFNS 659 (928)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~-~~~~g~~~ 659 (928)
..|+.+....+.+++...+.....++-++.+.-+...+.-|+..++.||+++.-.--|--+++--.++... +.+.|-+.
T Consensus 15 ~~~~~v~~~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~g 94 (207)
T PRK11475 15 GNPYKLHTFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDG 94 (207)
T ss_pred CCeeEEEEeCCHHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeE
Confidence 45666666777777666554333455554444555556679999999998755444444445433333333 33678777
Q ss_pred eeecCCCChHHHhccCC
Q psy3753 660 FVIRHDKNINSALHGLN 676 (928)
Q Consensus 660 ~~~~~~~~~~~~l~~~~ 676 (928)
+-. .+.+++...+++.
T Consensus 95 yl~-K~~~~~eL~~aI~ 110 (207)
T PRK11475 95 VLS-KASTLEILQQELF 110 (207)
T ss_pred EEe-cCCCHHHHHHHHH
Confidence 754 4445555555543
No 209
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.64 E-value=5.6e+02 Score=24.83 Aligned_cols=101 Identities=7% Similarity=-0.068 Sum_probs=53.3
Q ss_pred HHHHcCCcceeecCCCChHHHhccCCcCcccc-ccccccCCchhhhHHHHHHHHHHHHHh-cCCeEEEEcChH-----HH
Q psy3753 651 YMKRVGFNSFVIRHDKNINSALHGLNIFSEKY-QTSADEKIPLNSFVKTVLDALNNIVTD-YKPAVFASSLAA-----ED 723 (928)
Q Consensus 651 ~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~y-qps~~~~~~l~~~~~~a~~~I~~~~~~-~~~~~vs~SGGK-----DS 723 (928)
++++.||+.+-+-.+.++++..++.......+ .-|... ......+.+.++.+.+. ...+.+.+.|.- |-
T Consensus 26 ~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~----~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~ 101 (137)
T PRK02261 26 ALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLY----GHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDF 101 (137)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCcc----ccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccCh
Confidence 78889999999988888777776554332211 111111 12233334444444333 223444444432 12
Q ss_pred HHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHH
Q psy3753 724 MVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKI 758 (928)
Q Consensus 724 ~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~ 758 (928)
.-...-+++.+ +..+|- .+....++.+|+++.
T Consensus 102 ~~~~~~l~~~G--~~~vf~-~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 102 EEVEKKFKEMG--FDRVFP-PGTDPEEAIDDLKKD 133 (137)
T ss_pred HHHHHHHHHcC--CCEEEC-cCCCHHHHHHHHHHH
Confidence 22223445555 556654 555788888887654
No 210
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=20.59 E-value=6.6e+02 Score=25.11 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhc-----CCeEE-EEcC--hHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEE
Q psy3753 697 KTVLDALNNIVTDY-----KPAVF-ASSL--AAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 697 ~~a~~~I~~~~~~~-----~~~~v-s~SG--GKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~ 768 (928)
.++...-+.+.+.+ .++++ +=+| |-|..|+...+.+.+.++.|+++.......+-.++--++.+.+|.++..
T Consensus 7 ~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 7 NAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp HHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEES
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEee
Confidence 34444444455555 23333 3344 8899999999999999988877766656555555555566677765543
No 211
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=20.47 E-value=1.9e+02 Score=28.70 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=68.5
Q ss_pred cCHHHHHHHHHHHHHhCCCe-EeccccCceE--EcccCCCChHHHHHHHHHcCCccc--------------cccCCcccc
Q psy3753 63 LSSKQMRMLSYIAKKYDRNY-GHFTTRQNIQ--FNWIKLKESPDILENLASVEMHAI--------------QTSGNCIRN 125 (928)
Q Consensus 63 lt~~ql~~la~iA~~yg~g~-i~lTtRq~iq--l~gi~~e~~~~~~~~L~~~GL~~~--------------~~~gd~vRn 125 (928)
++.+.+..+.++.++|+... .-|--=+.+| +.+|+.+.+..+.+.| |+... .+.| ...
T Consensus 2 ~~~~~~~~~~~i~~~~~~~~~~ll~~L~~vQ~~~g~ip~~~~~~iA~~l---~v~~~~v~~v~tFY~~f~~~p~g--k~~ 76 (154)
T PRK07539 2 LSAEELAAIEREIAKYPRPRSAVIPALKIVQEQRGWVPDEAIEAVADYL---GMPAIDVEEVATFYSMIFRQPVG--RHV 76 (154)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHh---CcCHHHHHHHHHHHhhhCcCCCC--CEE
Confidence 56677888999999998432 1111112223 6788888887777766 33221 1122 224
Q ss_pred eEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCccccc
Q psy3753 126 ITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIF 181 (928)
Q Consensus 126 i~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~ 181 (928)
|..|-+. .|. ..-+..+.+.|.+.+.-.+.-....++|.+.-++|-..|....
T Consensus 77 I~VC~g~-~C~--~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gP 129 (154)
T PRK07539 77 IQVCTST-PCW--LRGGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAP 129 (154)
T ss_pred EEEcCCc-hHH--HCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCC
Confidence 6678765 353 2345677888887775222212356789999999999998654
No 212
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.44 E-value=1.1e+03 Score=25.52 Aligned_cols=137 Identities=10% Similarity=0.042 Sum_probs=78.5
Q ss_pred CCceEEEEecCccc--CCcc------hhHHHHHHHhcCC-ceeEeeccccc---hhhHHHHHHcCCcceeecCCCChHHH
Q psy3753 604 KQFKVIAINFIKFT--DGRG------YSIAYNLRMKFNY-TGELRAIGDVL---QDQLFYMKRVGFNSFVIRHDKNINSA 671 (928)
Q Consensus 604 ~~~~~~~~~~~~~~--d~r~------~~~~~~~r~~~~~-~g~~~a~~~~~---~d~~~~~~~~g~~~~~~~~~~~~~~~ 671 (928)
-+++.|++-||+-. ++.| +...+.++.. .- .-+|.+..... .+-...+.++|++.+-+.-..
T Consensus 32 ~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~----- 105 (266)
T cd07944 32 AGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGD-SKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHK----- 105 (266)
T ss_pred CCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhh-hccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEeccc-----
Confidence 58999999999763 2222 2223334332 11 23343332222 244555666777766653211
Q ss_pred hccCCcCccccccccccCCchhhhHHHHHHHHHHHHHhcCCeE--EEEcChHHHHHHHHHHHhcC--CCceEEEEcCC-C
Q psy3753 672 LHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPAV--FASSLAAEDMVLTDLILRNN--FDINIFTLNTG-R 746 (928)
Q Consensus 672 l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~--vs~SGGKDS~vll~L~~~~~--~~i~vvf~DTg-~ 746 (928)
..++.+.+.++.+.+..-.+. +..+++.+---++.++.++. .--.+.+.||. .
T Consensus 106 ----------------------~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~ 163 (266)
T cd07944 106 ----------------------HEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGS 163 (266)
T ss_pred ----------------------ccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 135666777777765433333 33466666666777776642 22357788985 5
Q ss_pred ChH-HHHHHHHHHHHHcC--CeEEE
Q psy3753 747 LHS-ETLNMLNKIYLTYK--YKIKV 768 (928)
Q Consensus 747 efp-eT~~~i~~~~~~~g--~~i~~ 768 (928)
-.| ++.++++.+.+.++ +++..
T Consensus 164 ~~P~~v~~lv~~l~~~~~~~~~i~~ 188 (266)
T cd07944 164 MYPEDIKRIISLLRSNLDKDIKLGF 188 (266)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEE
Confidence 566 58888999988887 66554
No 213
>PRK09028 cystathionine beta-lyase; Provisional
Probab=20.29 E-value=7.3e+02 Score=28.69 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=39.4
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPL 772 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~ 772 (928)
.-++.+++|.....++-+.. ..+.-.|+..|.. |+.|..++.....++|+++..+.+.
T Consensus 77 ~~~~~~~sG~~Ai~~~l~al-l~~GD~Vvv~~~~--Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 77 AGTALYPSGAAAISNALLSF-LKAGDHLLMVDSC--YEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred CcEEEECCHHHHHHHHHHHH-hCCCCEEEEECCC--cHHHHHHHHHhhhhcceEEEEECCC
Confidence 34678899999876544432 3333456666654 7889888887778889888776543
No 214
>PRK06608 threonine dehydratase; Provisional
Probab=20.27 E-value=4.3e+02 Score=29.88 Aligned_cols=133 Identities=9% Similarity=-0.058 Sum_probs=71.1
Q ss_pred eEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCCh-HHHhccCCcCccccccc
Q psy3753 607 KVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNI-NSALHGLNIFSEKYQTS 685 (928)
Q Consensus 607 ~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~-~~~l~~~~~~~~~yqps 685 (928)
.+|.-....+ |.++|..=|. +|++-.+-.--..=......++..|=+-+..+..... ..+.+ .+.-..+|=+.
T Consensus 74 ~vv~~SsGN~----g~alA~~a~~-~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~~~~~~~~a~~-~~~~~~~~~~~ 147 (338)
T PRK06608 74 KIVAYSTGNH----GQAVAYASKL-FGIKTRIYLPLNTSKVKQQAALYYGGEVILTNTRQEAEEKAKE-DEEQGFYYIHP 147 (338)
T ss_pred eEEEECCCHH----HHHHHHHHHH-cCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHH-HHhCCCEEcCC
Confidence 4454444444 6777777775 5887777554444445667788888665555332211 11112 11112233233
Q ss_pred cccCCchhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCC
Q psy3753 686 ADEKIPLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTG 745 (928)
Q Consensus 686 ~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg 745 (928)
.+++..+...--.+.|++++.-.+.+.++++.++|-=.+-+..-+++.++++.|+-++..
T Consensus 148 ~~~~~~~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~ 207 (338)
T PRK06608 148 SDSDSTIAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPL 207 (338)
T ss_pred CCCHHHhccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeC
Confidence 333333333222355555554213345777775555555555556677888999999884
No 215
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=20.08 E-value=1.7e+02 Score=29.61 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred CccCHHHHHHHHHHHHHhC-CCeEeccccCceE--EcccCCCChHHHHHHHHHcCCcccc--------------ccCCcc
Q psy3753 61 GMLSSKQMRMLSYIAKKYD-RNYGHFTTRQNIQ--FNWIKLKESPDILENLASVEMHAIQ--------------TSGNCI 123 (928)
Q Consensus 61 G~lt~~ql~~la~iA~~yg-~g~i~lTtRq~iq--l~gi~~e~~~~~~~~L~~~GL~~~~--------------~~gd~v 123 (928)
++++.+++..|.++.++|+ ....-|-.=+.+| +-+|+.+.+..+.+.| |+.... +.|..+
T Consensus 14 ~~~~~~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l---~v~~a~V~gVatFY~~f~~~P~Gk~~ 90 (169)
T PRK07571 14 HPSGDKRFKVLEATMKRNQYRQDALIEVLHKAQELFGYLERDLLLYVARQL---KLPLSRVYGVATFYHLFSLKPSGEHT 90 (169)
T ss_pred CcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHh---CcCHHHHHHHHHHccccCcCCCCCEE
Q ss_pred cceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccc
Q psy3753 124 RNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAI 180 (928)
Q Consensus 124 Rni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~ 180 (928)
|..|-+. +.-+.-+..+.+.+.+.+.-.+.-..-.++|.+-..-|-..|..+
T Consensus 91 --I~VC~g~---aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C~~A 142 (169)
T PRK07571 91 --CVVCTGT---ACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCLGACGIA 142 (169)
T ss_pred --EEEcCCh---HHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCccCCC
No 216
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=20.08 E-value=1.2e+03 Score=25.70 Aligned_cols=163 Identities=10% Similarity=-0.009 Sum_probs=86.9
Q ss_pred eEEeCCCcCHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhcCC---ceeEeeccccchhhHHHHHHc--CC
Q psy3753 583 GIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNY---TGELRAIGDVLQDQLFYMKRV--GF 657 (928)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~---~g~~~a~~~~~~d~~~~~~~~--g~ 657 (928)
|+.++.++.++-.. .|.. -++..|++-||..+|.= +=..+.+..+ ++ .=++.+...-...-...+..+ |.
T Consensus 17 g~~~s~~~Ki~ia~-~L~~--~Gv~~IE~gfP~~~~~e-~e~~~~i~~~-~~~~~~~~~~al~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 17 AEPMSVEQKLRFFK-LLVK--IGFKEIEVGFPSASQTD-FDFVRELIEE-DLIPDDVTIQVLTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCCCCHHHHHHHHH-HHHH--cCCCEEEEeCCCCCHHH-HHHHHHHHHc-cCCCCCCEEEEEcCCChhhHHHHHHHhCCC
Confidence 45666665555443 3311 37899999999998843 4455555443 43 123444444444334444444 44
Q ss_pred c--ceeecCCCChHHHhccCCcCccccccccccCCchhhhHHHHHHHHHHHHHhcC-----CeEEEEcC----hHHHHHH
Q psy3753 658 N--SFVIRHDKNINSALHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYK-----PAVFASSL----AAEDMVL 726 (928)
Q Consensus 658 ~--~~~~~~~~~~~~~l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~-----~~~vs~SG----GKDS~vl 726 (928)
+ .+.+.-+.+.....+ ....+.++-++...+.++.+.+... .+.+.|++ -.|---+
T Consensus 92 ~~~~v~i~~~~Sd~h~~~-------------~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l 158 (284)
T cd07942 92 KKAIVHLYNATSPLQRRV-------------VFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFA 158 (284)
T ss_pred CCCEEEEEEcCCHHHHHH-------------HhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHH
Confidence 3 233322222111111 1112344444455555555444321 24678887 5666677
Q ss_pred HHHHHhc------CCC--ceEEEEcCC-CChH-HHHHHHHHHHHHcC
Q psy3753 727 TDLILRN------NFD--INIFTLNTG-RLHS-ETLNMLNKIYLTYK 763 (928)
Q Consensus 727 l~L~~~~------~~~--i~vvf~DTg-~efp-eT~~~i~~~~~~~g 763 (928)
+.++..+ +.+ ..+-+.||- ...| ++.++++.+.+.++
T Consensus 159 ~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~ 205 (284)
T cd07942 159 LEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLS 205 (284)
T ss_pred HHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcC
Confidence 7877664 111 257788984 5666 57788888888875
Done!