Query psy3753
Match_columns 928
No_of_seqs 595 out of 3798
Neff 7.6
Searched_HMMs 29240
Date Sat Aug 17 00:41:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj8_A Probable ferredoxin-dep 100.0 1.6E-86 5.5E-91 786.9 41.5 491 7-544 44-565 (566)
2 2akj_A Ferredoxin--nitrite red 100.0 3E-84 1E-88 767.6 32.8 478 7-524 100-601 (608)
3 3b0g_A NII3, nitrite reductase 100.0 2.8E-84 9.5E-89 767.6 31.8 478 7-524 83-583 (591)
4 4g38_A SIR-HP, sirhp, sulfite 100.0 2.2E-83 7.5E-88 757.0 31.2 469 21-543 34-559 (570)
5 1aop_A Sirhp, sulfite reductas 100.0 1.2E-80 4.2E-85 728.6 32.6 448 49-547 4-490 (497)
6 2goy_A Adenosine phosphosulfat 100.0 8.5E-49 2.9E-53 425.4 18.1 215 697-914 40-260 (275)
7 2oq2_A Phosphoadenosine phosph 100.0 5.2E-48 1.8E-52 416.1 19.8 213 698-916 29-251 (261)
8 2o8v_A Phosphoadenosine phosph 100.0 5E-46 1.7E-50 398.8 18.9 211 697-915 31-244 (252)
9 3or1_A Sulfite reductase alpha 100.0 8.9E-44 3E-48 400.2 16.3 236 328-573 88-420 (437)
10 3mm5_A Sulfite reductase, diss 100.0 4.7E-42 1.6E-46 387.2 14.7 230 333-572 94-402 (418)
11 3fwk_A FMN adenylyltransferase 100.0 1E-39 3.5E-44 350.4 15.2 176 691-890 34-237 (308)
12 3or1_B Sulfite reductase beta; 100.0 1.1E-39 3.9E-44 367.8 15.1 233 328-571 56-376 (386)
13 3mm5_B Sulfite reductase, diss 100.0 2E-38 7E-43 356.1 16.9 240 319-566 33-357 (366)
14 3or1_B Sulfite reductase beta; 100.0 4.2E-37 1.4E-41 346.8 19.3 213 51-268 62-354 (386)
15 3mm5_A Sulfite reductase, diss 100.0 5.1E-37 1.7E-41 346.2 18.6 213 51-268 95-379 (418)
16 3or1_A Sulfite reductase alpha 100.0 2.7E-36 9.1E-41 339.5 20.4 212 51-267 97-395 (437)
17 1zun_A Sulfate adenylyltransfe 100.0 1.8E-36 6.1E-41 334.8 17.0 203 689-900 25-307 (325)
18 3mm5_B Sulfite reductase, diss 100.0 3.5E-36 1.2E-40 338.0 17.4 220 43-268 38-337 (366)
19 2wsi_A FAD synthetase; transfe 100.0 1.8E-35 6E-40 324.7 14.4 189 694-903 32-250 (306)
20 3b0g_A NII3, nitrite reductase 100.0 1.3E-33 4.6E-38 334.3 14.3 220 319-547 119-354 (591)
21 1zj8_A Probable ferredoxin-dep 100.0 7E-33 2.4E-37 328.1 19.8 207 332-547 102-317 (566)
22 2akj_A Ferredoxin--nitrite red 100.0 1.5E-33 5.1E-38 334.1 13.9 216 325-547 140-371 (608)
23 1sur_A PAPS reductase; assimil 100.0 1.9E-32 6.7E-37 286.8 18.2 182 698-884 31-215 (215)
24 1aop_A Sirhp, sulfite reductas 100.0 4.2E-32 1.4E-36 317.8 14.4 237 17-265 244-489 (497)
25 4g38_A SIR-HP, sirhp, sulfite 100.0 4.4E-31 1.5E-35 311.6 16.0 207 42-260 345-557 (570)
26 2ywb_A GMP synthase [glutamine 99.3 2.7E-11 9.4E-16 141.8 14.3 180 691-879 191-383 (503)
27 2dpl_A GMP synthetase, GMP syn 99.2 9.4E-11 3.2E-15 128.6 13.4 176 692-876 3-187 (308)
28 1wy5_A TILS, hypothetical UPF0 99.2 7.8E-11 2.7E-15 130.1 12.6 146 711-871 25-190 (317)
29 1ni5_A Putative cell cycle pro 98.9 3.5E-09 1.2E-13 121.6 12.3 155 702-871 5-177 (433)
30 3bl5_A Queuosine biosynthesis 98.9 1.2E-09 4E-14 113.7 7.6 175 711-886 4-199 (219)
31 1kor_A Argininosuccinate synth 98.9 1.4E-09 4.7E-14 123.0 7.5 150 712-872 2-167 (400)
32 3k32_A Uncharacterized protein 98.9 1E-09 3.5E-14 113.1 5.3 141 711-865 7-153 (203)
33 3a2k_A TRNA(Ile)-lysidine synt 98.9 5.3E-09 1.8E-13 121.2 11.2 150 711-871 19-188 (464)
34 2hma_A Probable tRNA (5-methyl 98.8 2.1E-08 7.3E-13 112.7 13.8 156 711-869 10-193 (376)
35 3tqi_A GMP synthase [glutamine 98.7 2.2E-08 7.5E-13 117.7 10.8 178 691-876 212-404 (527)
36 2pg3_A Queuosine biosynthesis 98.7 2.1E-08 7.2E-13 105.4 9.3 157 711-869 3-181 (232)
37 1xng_A NH(3)-dependent NAD(+) 98.7 6.2E-08 2.1E-12 104.2 12.8 164 692-869 5-175 (268)
38 2e18_A NH(3)-dependent NAD(+) 98.6 9.3E-08 3.2E-12 102.1 10.3 165 692-873 6-176 (257)
39 3p52_A NH(3)-dependent NAD(+) 98.6 2.2E-07 7.4E-12 98.5 12.3 165 691-868 5-175 (249)
40 2der_A TRNA-specific 2-thiouri 98.6 1.3E-07 4.5E-12 106.3 11.2 155 711-869 18-201 (380)
41 1gpm_A GMP synthetase, XMP ami 98.5 2.4E-07 8.1E-12 108.9 11.8 176 691-875 209-401 (525)
42 3fiu_A NH(3)-dependent NAD(+) 98.5 5.4E-07 1.8E-11 95.5 11.6 175 690-875 7-190 (249)
43 1k92_A Argininosuccinate synth 98.2 1.5E-06 5.2E-11 98.8 7.5 168 710-885 10-198 (455)
44 3uow_A GMP synthetase; structu 98.2 6.4E-06 2.2E-10 97.2 11.9 177 691-875 237-432 (556)
45 2c5s_A THII, probable thiamine 98.1 4E-06 1.4E-10 95.5 9.7 146 711-867 188-343 (413)
46 2nz2_A Argininosuccinate synth 98.1 5E-06 1.7E-10 94.2 7.8 151 711-870 6-173 (413)
47 3noy_A 4-hydroxy-3-methylbut-2 98.0 5.5E-06 1.9E-10 89.6 7.3 123 370-523 239-362 (366)
48 2vxo_A GMP synthase [glutamine 97.7 7.3E-05 2.5E-09 90.1 10.8 80 691-771 222-303 (697)
49 1vl2_A Argininosuccinate synth 97.6 5.3E-05 1.8E-09 85.3 6.9 151 711-870 15-182 (421)
50 3dpi_A NAD+ synthetase; ssgcid 97.6 0.00024 8.1E-09 76.2 10.5 170 691-868 25-211 (285)
51 3q4g_A NH(3)-dependent NAD(+) 97.5 0.0003 1E-08 75.4 10.7 175 691-875 19-217 (279)
52 3n05_A NH(3)-dependent NAD(+) 97.4 0.00037 1.3E-08 83.1 10.8 162 692-866 306-473 (590)
53 1wxi_A NH(3)-dependent NAD(+) 97.4 0.00062 2.1E-08 73.0 11.5 164 691-868 18-202 (275)
54 3noy_A 4-hydroxy-3-methylbut-2 97.4 0.00012 4.2E-09 79.2 5.5 112 98-239 249-361 (366)
55 4g9p_A 4-hydroxy-3-methylbut-2 97.4 0.00021 7.3E-09 78.6 7.3 122 387-525 273-402 (406)
56 1kqp_A NAD+ synthase, NH(3)-de 97.3 0.00072 2.4E-08 72.4 10.1 169 692-875 18-205 (271)
57 3rjz_A N-type ATP pyrophosphat 97.0 0.0013 4.3E-08 68.6 7.6 127 712-867 6-140 (237)
58 3sdb_A Glutamine-dependent NAD 96.2 0.0084 2.9E-07 72.3 9.1 76 694-769 343-427 (680)
59 1vbk_A Hypothetical protein PH 96.1 0.0076 2.6E-07 65.5 7.2 118 711-867 180-307 (307)
60 3ilv_A Glutamine-dependent NAD 96.0 0.014 4.8E-07 69.9 9.5 170 692-868 283-505 (634)
61 1q15_A CARA; CMPR, (2S,5S)-5-c 94.4 0.083 2.9E-06 61.4 9.2 82 691-774 215-300 (503)
62 1jgt_A Beta-lactam synthetase; 94.4 0.088 3E-06 61.3 9.2 130 691-829 218-356 (513)
63 4g9p_A 4-hydroxy-3-methylbut-2 93.8 0.051 1.7E-06 59.9 5.2 122 100-241 274-401 (406)
64 1ct9_A Asparagine synthetase B 93.2 0.36 1.2E-05 56.7 11.7 77 696-774 208-302 (553)
65 4f4h_A Glutamine dependent NAD 86.4 1.5 5.1E-05 51.5 8.9 59 711-769 301-361 (565)
66 3ctl_A D-allulose-6-phosphate 58.3 15 0.00052 37.6 6.6 89 570-663 97-195 (231)
67 3ovp_A Ribulose-phosphate 3-ep 43.2 28 0.00096 35.5 5.7 83 575-663 108-197 (228)
68 3inp_A D-ribulose-phosphate 3- 39.3 34 0.0012 35.4 5.6 87 572-663 127-223 (246)
69 2img_A Dual specificity protei 38.7 86 0.003 28.7 8.1 103 645-758 25-129 (151)
70 1tqx_A D-ribulose-5-phosphate 35.0 70 0.0024 32.5 7.1 83 574-663 109-201 (227)
71 4erc_A Dual specificity protei 34.2 1.1E+02 0.0037 28.0 7.9 100 647-758 26-128 (150)
72 3s4o_A Protein tyrosine phosph 30.9 1.4E+02 0.0047 27.8 8.2 102 647-758 38-149 (167)
73 3hdg_A Uncharacterized protein 23.6 85 0.0029 27.7 5.0 80 591-674 39-118 (137)
74 2d8c_A Phosphatidylcholine:cer 23.2 32 0.0011 30.1 1.7 22 847-868 14-35 (97)
75 3eod_A Protein HNR; response r 22.5 1.4E+02 0.0048 25.9 6.1 74 589-665 37-110 (130)
76 3heb_A Response regulator rece 22.3 1.5E+02 0.005 26.7 6.4 80 605-686 59-140 (152)
77 1zzw_A Dual specificity protei 20.4 3.8E+02 0.013 24.3 9.0 57 691-758 64-123 (149)
No 1
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=100.00 E-value=1.6e-86 Score=786.86 Aligned_cols=491 Identities=25% Similarity=0.428 Sum_probs=430.3
Q ss_pred cCHHHHHHHHHH-HHHHHHHHhcCCCCHHHHhhccccceeeeecC-------------------eeEEEEEcCCCccCHH
Q psy3753 7 YDHQLVKERVIQ-YRDQVRRRLSNELSEEEFIVLRLQNGLYLQRY-------------------AYMLRIAIPYGMLSSK 66 (928)
Q Consensus 7 ~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~-------------------~~~vRir~p~G~lt~~ 66 (928)
-++++++++|.+ |.+.. .+++++++++.+..++|+|.|++ .||||||+|+|.+|++
T Consensus 44 ~~~l~~~~~i~~~~~~~~----~~~i~~~d~~~~~k~~G~y~q~~~~~~~~~~~~~~~~~~~~~~~mvRvr~p~G~lt~~ 119 (566)
T 1zj8_A 44 GNPLDVRERIENIYAKQG----FDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAA 119 (566)
T ss_dssp SCGGGHHHHHHHTHHHHC----GGGSCHHHHHTGGGGGTEEEEECTTCCGGGCSGGGHHHHEEEEEEEEEBCGGGEECHH
T ss_pred cchHHHHHHHHHHHhhcC----CCCCCHHHHhhhheEEEeeeecCCccccccccccccccccCceEEEEecCCCCcCCHH
Confidence 456677777754 55533 57899999985444699999963 4999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHH
Q psy3753 67 QMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYA 146 (928)
Q Consensus 67 ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la 146 (928)
||++||++|++||+|++|+|||||||||||+.+++++++++|.++||.+.++||+++|||++||+++.|+.+++|+++++
T Consensus 120 qlr~la~ia~~yg~g~i~~TtRqniql~gi~~~~l~~i~~~L~~~gl~~~~~~G~~~Rnv~~~p~~~~~~~~~~D~~~~~ 199 (566)
T 1zj8_A 120 ALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPRVVLGSPLAGESLDEVLDPTWAI 199 (566)
T ss_dssp HHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHHHTTTCBCTTSSSSSEEEEEECTTTTTCTTCSCCTHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEECCccEEEecCCHHHHHHHHHHHHHcCCCCCCCcCCCCCCeecCcccccCcccccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHH
Q psy3753 147 EILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHI 226 (928)
Q Consensus 147 ~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~ 226 (928)
.+|.+.+..++++.+||+||||+||||++.| +.++||||+++.+.++..||+|++||++|..|++|+.+..+++++++
T Consensus 200 ~~l~~~~~~~~~~~~LP~KfKiavsgc~~~~--~~~~Dig~i~~~~~~~~~G~~v~vGG~~g~~p~~a~~l~~~v~~e~v 277 (566)
T 1zj8_A 200 EEIVRRYIGKPDFADLPRKYKTAISGLQDVA--HEINDVAFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGEV 277 (566)
T ss_dssp HHHHHHHTTSGGGSSCSSCEEEEEESSSCSC--GGGSSEEEEEEEETTTEEEEEEEECCBCSSSCBCCEEEEEEECGGGH
T ss_pred HHHHHHHcCCcccccCCcceEEEEeccCCcc--cccCcEEEEEEEecCCCceEEEEEcccCCCCCcchhhhccCCCHHHH
Confidence 9999999888888999999999999998854 57999999999775567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHH-HhhccCCCCCccHHHHHhhhhcccCCCCcCCCcch
Q psy3753 227 LTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEE-WKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNS 305 (928)
Q Consensus 227 ~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 305 (928)
++++++++++|+++|+|+||+++||+++++++|+++|++.++++ ++..... .+......
T Consensus 278 ~~~~~ai~~~~~~~G~R~~r~~aRl~~li~~~G~e~f~~~v~~~~~~~~~~~-----------------~~~~~~~~--- 337 (566)
T 1zj8_A 278 PEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLID-----------------GPAPEPVK--- 337 (566)
T ss_dssp HHHHHHHHHHHHHHSCCSSGGGCSHHHHHHHHCHHHHHHHHHHHTTSSCCEE-----------------CCCCCCCS---
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHCHHHHHHHHHHHhccccccc-----------------CCCccCcc---
Confidence 99999999999999999999999999999999999999999843 3221100 00000000
Q ss_pred hhhHhhhccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCC
Q psy3753 306 IILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVT 385 (928)
Q Consensus 306 ~~~~~~~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~ 385 (928)
....+.|+++|+ +|.|+|++.++. |++|+++|+.||++|++||+|.+|+|++|||+|++++
T Consensus 338 -------------~~~~~~G~~~qk-~G~~~v~v~~p~-----G~lt~~~l~~Ladiae~yg~g~irlT~~qniil~~v~ 398 (566)
T 1zj8_A 338 -------------HPIDHVGVQRLK-NGLNAVGVAPIA-----GRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIP 398 (566)
T ss_dssp -------------SCCCCCEEEECT-TSSEEEEEBCBT-----TEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEEC
T ss_pred -------------ccCCCcceeecc-CCcEEEEEeCCC-----CccCHHHHHHHHHHHHHhCCCEEEECCCCcEEEecCC
Confidence 001245788888 689999988754 9999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhc--c-c-CcCCCCCeEEEEecCCCCC
Q psy3753 386 KDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--K-D-DQRNIGKISLNISGCINSC 461 (928)
Q Consensus 386 ~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~-~-~~~~~~k~ki~iSGCpn~C 461 (928)
++++++++++|.+.|+.+++++.+|+++||+|.++|+++++||+.++..|.+.+. . . .+..+.+|||+||||||+|
T Consensus 399 ~~~l~~i~~~L~~~Gl~~~~s~~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~~~~~~~~~ki~vSGCpN~C 478 (566)
T 1zj8_A 399 DALLDDLIAGLDALGLQSRPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSC 478 (566)
T ss_dssp HHHHHHHHHHHHHTTCBSSCCHHHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHHTHHHHTTCCSCCCEEEESSTTCT
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcccccccCCCcccCccchhhHHHHHHHHHHHHHHHhhccccccCCCceEEEecCCccc
Confidence 9999999999999999998887789999999999999999999888877777665 1 1 0123348999999999999
Q ss_pred cccccccEEEEeEeeCC-----CcEEEEEEcCCCCCCCccccccc-CCCCcccHHHHHHHHHHHHHHhcccccccccccc
Q psy3753 462 GHHHIGNIGILGLNKNG-----NEYFQILIGGSQGNKLNFGKIIG-PSFSADQVPDIINRILKVYLRRCYLMCKIIKNDT 535 (928)
Q Consensus 462 ~~~~~aDig~ig~~~~~-----~~g~~i~vGG~~~~~~~~g~~~~-~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~ 535 (928)
++++++||||+|++++. ..+|+|++||+.|.++++|+.+. ..++++|+++++++++++|++++++.||+ ++.
T Consensus 479 a~~~~aDIGivG~~~~~~~g~~~~gy~i~lGG~~g~~~~~g~~l~~~~v~~eei~~~l~~l~~~y~~~~~~~Erf--~~~ 556 (566)
T 1zj8_A 479 ARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNFVKHRSEGERF--AQW 556 (566)
T ss_dssp TCGGGSSEEEEEEEEESSSSCEEEEEEEEESCBCSTTCBCCEECTTCCEETTTHHHHHHHHHHHHHHSCCTTCCH--HHH
T ss_pred hhhhhcceeEEEEeccCCCCccceeEEEEeCCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCH--HHH
Confidence 99999999999987542 26899999999988899999886 46799999999999999999999999999 999
Q ss_pred eeehhhhhh
Q psy3753 536 IVNDNWKML 544 (928)
Q Consensus 536 i~r~g~~~~ 544 (928)
++|.||..|
T Consensus 557 i~R~G~~~~ 565 (566)
T 1zj8_A 557 VIRAEEDDL 565 (566)
T ss_dssp HHHSCGGGG
T ss_pred HHhcCHHhc
Confidence 999998765
No 2
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=100.00 E-value=3e-84 Score=767.57 Aligned_cols=478 Identities=25% Similarity=0.420 Sum_probs=413.5
Q ss_pred cCHHHHHHH--HHHHHHHHHHH-hcCCCCHHHHhhcccc-ceeeeec----CeeEEEEEcCCCccCHHHHHHHHHHHHHh
Q psy3753 7 YDHQLVKER--VIQYRDQVRRR-LSNELSEEEFIVLRLQ-NGLYLQR----YAYMLRIAIPYGMLSSKQMRMLSYIAKKY 78 (928)
Q Consensus 7 ~~~~~~~~~--i~~~~~~~~~~-~~~~~~~~~~~~~~~~-~G~~~q~----~~~~vRir~p~G~lt~~ql~~la~iA~~y 78 (928)
-+|+.+..+ |++|.+..-.- -.+++++++|+ ++++ +|+|.|+ +.||+|||+|+|.+|++||++||+||++|
T Consensus 100 ~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~-~rlk~~G~y~r~~~~~~~~mvRvr~PgG~lt~~qlr~ladiA~ky 178 (608)
T 2akj_A 100 KDPMKLFIEDGISDLATLSMEEVDKSKHNKDDID-VRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKY 178 (608)
T ss_dssp SCTTHHHHTCHHHHHTTCCHHHHTTSHHHHHHHH-TGGGGGTEEECHHHHTTCEEEECCCGGGEEEHHHHHHHHHHHHTT
T ss_pred cCCcccchhhhHHHHhhccccccccccCCHHHHH-HHHhhcceeeeccCCCceEEEEecCCCcccCHHHHHHHHHHHHHh
Confidence 456677776 77766643222 24566899996 4444 9999875 57999999999999999999999999999
Q ss_pred C-CCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhcc--
Q psy3753 79 D-RNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTF-- 155 (928)
Q Consensus 79 g-~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~-- 155 (928)
| +|++|+|||||||||||+.+++++++++|.++||.+.+++|+++|||++||+++.|+.+++|+.+++.+|.+.+..
T Consensus 179 g~~G~i~lTtRq~iql~gi~~e~l~~i~~~L~~~Gl~~~~~~gd~~Rnv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~ 258 (608)
T 2akj_A 179 GKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANS 258 (608)
T ss_dssp GGGCCEEECTTSCEEEEEECGGGHHHHHHHHHTTTCCCTTCSSSSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHTTTT
T ss_pred CCCCeEEEecCcceEEcCCCHHHHHHHHHHHHHcCCCCCCCcCCCCCCeEeCCCcccCcchhhhHHHHHHHHHHHHhhcc
Confidence 9 7999999999999999999999999999999999998999999999999999999999999999999999999874
Q ss_pred --CCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCC-CcccccccccCChHHHHHHHHH
Q psy3753 156 --HPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRT-PIIGQIICKFLPWKHILTYIEA 232 (928)
Q Consensus 156 --~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~-p~~g~~l~~~v~~~e~~~~~~a 232 (928)
+|++.+||+||||+||||+++|+.+.++||||+++.+ +|..||+|++||++|.. |..+..+..|++++++++++++
T Consensus 259 ~~~~~~~~LPrKfKiavsgc~~~c~~~~~~Dig~i~~~~-~g~~Gf~v~vGGg~g~~~~~~~~~l~~~v~~eev~~~~~a 337 (608)
T 2akj_A 259 RGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPATK-NGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKA 337 (608)
T ss_dssp TCCGGGSCCSSCBCEEECCCTTCTTCGGGSSEEEEEEES-SSSEEEEEEECCEECSSCEECCEEEEEEEEGGGHHHHHHH
T ss_pred cCCccccccCcceEEEeccCcccccccccceEEEEEEEe-CCccEEEEEECcccCCCCcccceecccccCHHHHHHHHHH
Confidence 5778899999999999999999999999999999886 56789999999999864 6788888899999999999999
Q ss_pred HHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHH-hhccCCCCCccHHHHHhhhhcccCCCCcCCCcchhhhHhh
Q psy3753 233 ILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEW-KNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEK 311 (928)
Q Consensus 233 i~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (928)
++++|+++|+|.+|+++||+++|+++|.++|++.+++++ +.. + .+......+
T Consensus 338 i~~~~~~~G~r~~R~~aRl~~li~~~G~e~f~~~v~~~~~~~~------l------------~~~~~~~~~--------- 390 (608)
T 2akj_A 338 MLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQV------L------------ERASSEELV--------- 390 (608)
T ss_dssp HHHHHHHHCCCSSGGGCSHHHHHHHHCHHHHHHHHHTTSTTSC------C------------CCCCSCBCS---------
T ss_pred HHHHHHHhCCcccccchhHHHHHHhhchHHHHHHHHHHhccCC------C------------CcCcccccc---------
Confidence 999999999999999999999999999999999998765 210 0 000000000
Q ss_pred hccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHH
Q psy3753 312 CKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFN 391 (928)
Q Consensus 312 ~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~ 391 (928)
...+....+.|+++|+++|+|+|+|+++. |+++++||+.||+||++||+|.+|+|+||||+|++|+.+++++
T Consensus 391 ---~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~-----Grlt~~qLr~LadiAe~yg~G~irlT~~QnIil~~v~~e~l~~ 462 (608)
T 2akj_A 391 ---QKDWERREYLGVHPQKQQGLSFVGLHIPV-----GRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDS 462 (608)
T ss_dssp ---CSSCCCCCCBEEEECSSTTEEEEEECCGG-----GEECHHHHHHHHHHHHHHSSSEEEEETTTEEEEEEEETTTHHH
T ss_pred ---ccccccccccceeecCcCCeEEEEEeCCC-----ccCCHHHHHHHHHHHHHhCCCeEEECCCCCeEECCCCHHHHHH
Confidence 00001122358899999999999988765 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-CCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCccccccc
Q psy3753 392 LWTEIKQ-YGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHHIGN 468 (928)
Q Consensus 392 ~~~~L~~-~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~~aD 468 (928)
++++|.. .|+.......+|+++||+|.++|+++++||+.++..|.++|. ..+| .|||||||||||+|++|+++|
T Consensus 463 l~~el~~~~~~~~~~g~~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~lp---~k~kI~vSGCpn~Ca~~~iaD 539 (608)
T 2akj_A 463 LLNEPLLKERYSPEPPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQRLVSVT---RPVRMHWTGCPNSCGQVQVAD 539 (608)
T ss_dssp HTTSHHHHTTSCSSCCTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHHHHEECS---SCCEEEEESSTTCTTCGGGSS
T ss_pred HHHHHhhhcccCCCCCccccceeeCCCCCCCCchhhhHHHHHHHHHHHHHHhcCCC---cceEEEEeCCCCccccccccc
Confidence 9998866 688766555699999999999999999999999999999886 3344 499999999999999999999
Q ss_pred EEEEeEee---CC--CcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHH-HHHHhc
Q psy3753 469 IGILGLNK---NG--NEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILK-VYLRRC 524 (928)
Q Consensus 469 ig~ig~~~---~~--~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~-~y~e~~ 524 (928)
|||+|++. ++ ..||+|++||+.|.++++|+.+.++++.++++++++++++ .|.++.
T Consensus 540 IGlvG~~~~~~~G~~~~gy~v~lGG~~g~~~rlg~~l~~~v~~eev~~~l~~ll~~~y~~~~ 601 (608)
T 2akj_A 540 IGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILINQFGAVP 601 (608)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEECCBCSTTCBCCEEEEEEEETTTHHHHHHHHHHHHSCCEE
T ss_pred eEEEEEeeccCCCcccceEEEEECCcCCCCCchhhHhhcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999873 33 3689999999999899999999999999999999999997 554443
No 3
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=100.00 E-value=2.8e-84 Score=767.64 Aligned_cols=478 Identities=25% Similarity=0.431 Sum_probs=413.7
Q ss_pred cCHHHHHHH--HHHHHHHHHHH-hcCCCCHHHHhhcccc-ceeeeec----CeeEEEEEcCCCccCHHHHHHHHHHHHHh
Q psy3753 7 YDHQLVKER--VIQYRDQVRRR-LSNELSEEEFIVLRLQ-NGLYLQR----YAYMLRIAIPYGMLSSKQMRMLSYIAKKY 78 (928)
Q Consensus 7 ~~~~~~~~~--i~~~~~~~~~~-~~~~~~~~~~~~~~~~-~G~~~q~----~~~~vRir~p~G~lt~~ql~~la~iA~~y 78 (928)
-+|+++..+ |++|.+..-.- -.+++++++++ ++++ +|+|.|+ +.||+|||+|+|.+|++||++||++|++|
T Consensus 83 ~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~-~r~k~~G~y~~~~~~~~~~mvRvr~PgG~lt~~qlr~ladia~~y 161 (591)
T 3b0g_A 83 KEPMKLFMENGIEELAKIPIEEIDQSKLTKDDID-VRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKY 161 (591)
T ss_dssp SCTTHHHHTCHHHHHTTSCHHHHTTSHHHHHHHH-TGGGGGTEEECTTTSTTEEEEECBCGGGEEEHHHHHHHHHHHHHT
T ss_pred cCCcccchhhhHHHHhhccccccccccCCHHHHH-HHhhhceeEEeccCCCCeEEEEecCCCceECHHHHHHHHHHHHHh
Confidence 456777776 77776644222 24566899996 4444 9999875 47999999999999999999999999999
Q ss_pred C-CCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhcc--
Q psy3753 79 D-RNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTF-- 155 (928)
Q Consensus 79 g-~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~-- 155 (928)
| +|++|+|||||||||||+.+++++++++|.++||.+.+++|+++|||++||+++.|+.+++|+.+++.+|.+.+..
T Consensus 162 g~~G~i~~TtRq~iql~gi~~~~l~~i~~~L~~~gl~~~~~~gd~~Rnv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~ 241 (591)
T 3b0g_A 162 GKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNS 241 (591)
T ss_dssp GGGCEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTCBCTTCSSSSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCCeEEEeCCccEEEecCCHHHHHHHHHHHHHcCCCCCcCccCCCCCeEeCCCcccCcchhhhHHHHHHHHHHHHhhcc
Confidence 9 7999999999999999999999999999999999998999999999999999999999999999999999998875
Q ss_pred --CCccccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCC-CcccccccccCChHHHHHHHHH
Q psy3753 156 --HPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRT-PIIGQIICKFLPWKHILTYIEA 232 (928)
Q Consensus 156 --~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~-p~~g~~l~~~v~~~e~~~~~~a 232 (928)
++.+.+||+||||+||||+++|+.+.++||||+++.+ +|..||+|++||++|.. |+.|..+..|++++++++++++
T Consensus 242 ~~~~~~~~LPrKfKiavsgc~~~c~~~~~~Dig~i~~~~-~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~a 320 (591)
T 3b0g_A 242 RGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATK-DGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRA 320 (591)
T ss_dssp TCCGGGSCCSSCBCEEECCCTTCTTCGGGSSEEEEEEEE-TTEEEEEEEECCEECSSCEECCEEEEEEEEGGGHHHHHHH
T ss_pred cCCccccccCcceEEEEccCcccccccccceEEEEEEEc-CCCceEEEEEccccCCCCcccceeeccccCHHHHHHHHHH
Confidence 5778899999999999999999999999999999886 56789999999999864 6888888899999999999999
Q ss_pred HHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHH-hhccCCCCCccHHHHHhhhhcccCCCCcCCCcchhhhHhh
Q psy3753 233 ILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEW-KNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEK 311 (928)
Q Consensus 233 i~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (928)
++++|+++|+|.+|+++||+++++++|.++|++.+++++ +... .+......+
T Consensus 321 i~~~~~~~G~r~~R~kaR~~~li~~~G~e~f~~~v~~~~~~~~l------------------~~~~~~~~~--------- 373 (591)
T 3b0g_A 321 ILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQL------------------ERASPEDLV--------- 373 (591)
T ss_dssp HHHHHHHHCCCSSGGGCSHHHHHHHHCHHHHHHHHHHTSGGGCC------------------BCCCSCCSC---------
T ss_pred HHHHHHHhcccccccchhHHHHHHhccHHHHHHHHHHHhccCcC------------------CCCcccccc---------
Confidence 999999999999999999999999999999999998865 2110 000000000
Q ss_pred hccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHH
Q psy3753 312 CKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFN 391 (928)
Q Consensus 312 ~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~ 391 (928)
...+....+.|+++|+++|+|+|++++++ |++|++||+.||++|++||+|.+|+|+||||+|++|+.+++++
T Consensus 374 ---~~~~~~~~~~G~~~qk~~g~~~v~v~~p~-----Grlt~~~Lr~LadiAe~yg~g~irlT~~QnI~l~~v~~e~l~~ 445 (591)
T 3b0g_A 374 ---QKQWERRDYLGVHPQKQEGYSFIGLHIPV-----GRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEA 445 (591)
T ss_dssp ---CSSCCCCCCSEEEECSSTTEEEEEECCGG-----GEECHHHHHHHHHHHHHHSSSEEEECTTSCEEEEEEEGGGHHH
T ss_pred ---ccccccccccceeecCcCCeEEEEEeCCC-----cCCCHHHHHHHHHHHHHhCCCeEEECCCCceEeCCCCHHHHHH
Confidence 00001122348899999999999998765 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccccccE
Q psy3753 392 LWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHHIGNI 469 (928)
Q Consensus 392 ~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~~aDi 469 (928)
++++|...|+....+..+|+++||+|.++|+.+++||++++..|.++|. ..+| .||||+||||||+|++|+++||
T Consensus 446 l~~el~~~~~~~~~g~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~~~lp---~k~kI~iSGCpn~C~~~~~aDI 522 (591)
T 3b0g_A 446 LLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLT---KPVRMHWTGCPNTCAQVQVADI 522 (591)
T ss_dssp HTTCGGGGTSCSSCCHHHHTCEECCGGGTCTTCSSCCHHHHHHHHHHHHHHEECC---SCCCEEEESSTTCTTCGGGSSE
T ss_pred HHHHHHhccCCCCCCCCccceecCCCcccCcchhhhHHHHHHHHHHHHHHhcCCC---cceEEEEeCCCCcccCcccccE
Confidence 9998876777765444699999999999999999999999999999886 3334 4999999999999999999999
Q ss_pred EEEeEee---CC--CcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHH-HHHHhc
Q psy3753 470 GILGLNK---NG--NEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILK-VYLRRC 524 (928)
Q Consensus 470 g~ig~~~---~~--~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~-~y~e~~ 524 (928)
||+|++. ++ ..||+|++||+.|.++++|+.+.++++++|+++++++++. .|.++.
T Consensus 523 G~vG~~~~~~~G~~~~gy~v~lGG~~g~~~rlg~~l~~~v~~eev~~~i~~ll~~~y~~~~ 583 (591)
T 3b0g_A 523 GFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVP 583 (591)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECCBCSSSCBCCEEEEEEEEGGGHHHHHHHHHHHHSCCEE
T ss_pred EEEEEeecCCCCccccceEEEECCcCCCCCchhhHHhcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999863 33 2789999999999899999999999999999999999986 555443
No 4
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=100.00 E-value=2.2e-83 Score=757.03 Aligned_cols=469 Identities=20% Similarity=0.335 Sum_probs=366.9
Q ss_pred HHHHHHhcCCCCHHHHhhccccceeeeec----------------CeeEEEEEcCCCccCHHHHHHHHHHHHHh-CCCeE
Q psy3753 21 DQVRRRLSNELSEEEFIVLRLQNGLYLQR----------------YAYMLRIAIPYGMLSSKQMRMLSYIAKKY-DRNYG 83 (928)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~G~~~q~----------------~~~~vRir~p~G~lt~~ql~~la~iA~~y-g~g~i 83 (928)
+.+.++..|++++++++.+|+ +|+|.|+ ..||||||+|+|.||++||++||++|++| |+|++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~k~-~G~y~Q~~r~~~~~~~~~~~~~~~~fm~Rvr~pgG~lt~~Ql~~la~iA~~y~g~G~i 112 (570)
T 4g38_A 34 EDLNDGLTGGFKGDNFLLIRF-HGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSI 112 (570)
T ss_dssp ------------------------------------------------CCCEECGGGEEEHHHHHHHHHHHHHHBSSCCE
T ss_pred HHHHHhhcCCCCHHHHHHHhh-ceeeEecccccchhhhccccCcCccEEEEEecCCcccCHHHHHHHHHHHHHhCCCCeE
Confidence 444556678999999998885 9999994 16999999999999999999999999999 99999
Q ss_pred eccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCC--CccCcccccChHHHHHHHHHHhcc------
Q psy3753 84 HFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDEL--SGVSFDEIIDTRPYAEILRQWSTF------ 155 (928)
Q Consensus 84 ~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~--ag~~~~~~~D~~~la~~l~~~~~~------ 155 (928)
|||||||||||||+.+++++++++|.++||.+.++|||++|||++||+ ++.| ..|+.++|++|.+.+..
T Consensus 113 ~lTtRqniQl~gi~~~~~~~i~~~L~~~gl~~~~a~Gd~vRNV~~~p~p~~g~~---~~d~~~~a~~i~~~l~~~~~~~~ 189 (570)
T 4g38_A 113 RLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATAWDMNRNVLCTSNPYESQL---HAEAYEWAKKISEHLLPRTRAYA 189 (570)
T ss_dssp EECTTSCEECCSBC-----CHHHHHHTTTCEECCTTTCCBCCCEECSSCSSGGG---HHHHHHHHHHHHHHTCC------
T ss_pred EEeCCceEEEecCCHHHHHHHHHHHHHcCCCCccccCCCccceEecCCcccCcc---HHHHHHHHHHHHHhhcccchhHH
Confidence 999999999999999999999999999999999999999999999985 4544 35788999998877642
Q ss_pred --------------CCcc--ccCCCceEEEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCC-------Cc
Q psy3753 156 --------------HPEF--AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRT-------PI 212 (928)
Q Consensus 156 --------------~~~~--~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~-------p~ 212 (928)
+|.| .+||+||||+||||+++|+.++++||||++..++++..||+|++||++|++ |+
T Consensus 190 e~~l~~~~~~~~~~~p~~g~~~LPrKFKiavsg~~~~~~~~~~~Dig~~a~~~~~~~~Gf~v~vGGg~g~~~~~~~t~p~ 269 (570)
T 4g38_A 190 EIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYAR 269 (570)
T ss_dssp -------------------------CBCEEEECTTBCTTCGGGSSEEEEEEESSSSEEEEEEEECCBCCCCTTCTTCCCB
T ss_pred HHHhccchhcccccCccccccCCCCceEEEEECCCcccccCccCcEEEEEEEeCCceeeEEEEEccccccccCcccCCCc
Confidence 4554 579999999999999999999999999999986444579999999999986 99
Q ss_pred ccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHHHHHhhccCCCCCccHHHHHhhhhc
Q psy3753 213 IGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKY 292 (928)
Q Consensus 213 ~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 292 (928)
+|+.+ .+++++++++++++++++|+++|+|.+|+++||+++++++|.++|++.++++++....
T Consensus 270 ~a~~l-~~v~~e~v~~~~~ai~~~~~~~G~r~~r~kaRlk~li~~~G~e~f~~~v~~~~g~~~~---------------- 332 (570)
T 4g38_A 270 TASEF-GYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFE---------------- 332 (570)
T ss_dssp CCEEE-EEEEGGGHHHHHHHHHHHHHHHCC-----CCSHHHHHHHHCHHHHHHHHHHHHTCCCB----------------
T ss_pred ccccc-CccCHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhhhHHHHHHHHHHHhhcccC----------------
Confidence 99999 4999999999999999999999999999999999999999999999999998763211
Q ss_pred ccCCCCcCCCcchhhhHhhhccCccccccccccccceeeCCEEEEEEEeccCCCCCCCcCH----HHHHHHHHHHHHhCC
Q psy3753 293 FITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITS----EQMNFIANLADHYSF 368 (928)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~gv~~qk~~g~~~v~v~~~~~~~p~G~l~~----~qlr~La~ia~~~g~ 368 (928)
++...... ...++.+|. + +++|+|+|+++++. |++++ ++|+.||+||++||
T Consensus 333 --~~~~~~~~-----------~~~d~~g~~-----~-~~dG~~~v~v~~~~-----Grl~~~~~~~~l~~La~iAe~~g- 387 (570)
T 4g38_A 333 --PIRPYEFT-----------GRGDRIGWV-----K-GIDDNWHLTLFIEN-----GRILDYPARPLKTGLLEIAKIHK- 387 (570)
T ss_dssp --CCCCCCCC-----------BCCCCCEEE-----E-CSTTEEEEEECCGG-----GEECEETTEEHHHHHHHHHHHCS-
T ss_pred --CCCccCcC-----------CCccccCce-----e-cCCCcEEEEEEecC-----CeecCCccHHHHHHHHHHHHHhC-
Confidence 11000000 122344454 2 36899999988865 99998 58999999999998
Q ss_pred CcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhc-----ccC
Q psy3753 369 SELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS-----KDD 443 (928)
Q Consensus 369 g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~-----~~~ 443 (928)
|.+|+|++|||+|.|+++++++++++.|.++||...+++.+++++||+|.++|+++++||+.++..|.+++. ..+
T Consensus 388 g~iRlT~~Qniil~gv~~e~l~~i~~~L~~~Gl~~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~~~~l 467 (570)
T 4g38_A 388 GDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGV 467 (570)
T ss_dssp SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTTCCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTC
T ss_pred CeEEECCCCcEEEecCCHHHHHHHHHHHHHcCCCCCCCCcccCeEECCCCCcccchhHhHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999844444688999999999999999999987777666654 223
Q ss_pred cCCCCCeEEEEecCCCCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHh
Q psy3753 444 QRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRR 523 (928)
Q Consensus 444 ~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~ 523 (928)
.|.|+|||||||||+|++|+.+||||+|+. ..+|+|++||+.+ ++++|+.+...++.+|+++++++++++|.++
T Consensus 468 --~p~~iki~vSGCpn~C~~~~~aDIGlvG~~---~g~y~l~lGG~~~-~~r~g~~~~~~v~~~ei~~~l~~ll~~y~~~ 541 (570)
T 4g38_A 468 --SDEHIVMRVTGCPNGCGRAMLAEVGLVGKA---PGRYNLHLGGNRI-GTRIPRMYKENITEPEILASLDELIGRWAKE 541 (570)
T ss_dssp --TTCCCCEEEESSTTCTTCGGGSSEEEEEEE---TTEEEEEECCCTT-SCSCCEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred --CCCceEEEEeCCCchhhhccccceEEEEec---ccceEEEECCcCC-CcccchhhhcCCCHHHHHHHHHHHHHHHHHh
Confidence 134999999999999999999999999965 3579999999987 7899999999999999999999999999999
Q ss_pred cccccccccccceeehhhhh
Q psy3753 524 CYLMCKIIKNDTIVNDNWKM 543 (928)
Q Consensus 524 ~~~~eR~~k~~~i~r~g~~~ 543 (928)
+++.||+ ++.+.|.|+.+
T Consensus 542 r~~~E~f--~~~~~R~G~~~ 559 (570)
T 4g38_A 542 REAGEGF--GDFTVRAGIIR 559 (570)
T ss_dssp CCTTCCH--HHHHHHTTSSC
T ss_pred CCCCCcH--HHHHHhcCCcc
Confidence 9999999 99999988864
No 5
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=100.00 E-value=1.2e-80 Score=728.56 Aligned_cols=448 Identities=19% Similarity=0.293 Sum_probs=381.4
Q ss_pred cCeeEEEEEcCCCccCHHHHHHHHHHHHHhC-CCeEeccccCceEEcccCCCChHHHHHHHHHcCCccccccCCcccceE
Q psy3753 49 RYAYMLRIAIPYGMLSSKQMRMLSYIAKKYD-RNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNIT 127 (928)
Q Consensus 49 ~~~~~vRir~p~G~lt~~ql~~la~iA~~yg-~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~ 127 (928)
.+.||+|||+|+|.+|++||++||++|++|| +|++|+|||||||||||+.+++++++++|.++||.+.++|||++|||+
T Consensus 4 ~~~~m~Rvr~p~G~lt~~qlr~la~ia~~yg~~g~~~~TtRq~iql~gi~~~~~~~i~~~L~~~gl~~~~~~Gd~~Rni~ 83 (497)
T 1aop_A 4 RHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVL 83 (497)
T ss_dssp ----CEECCCGGGEEEHHHHHHHHHHHHHHBSSCCEEECTTSCEEECCBC-----CHHHHHHHTTCCCC---CCCBCCCE
T ss_pred cceEEEEEccCCcccCHHHHHHHHHHHHHhCCCCeEEEECcccEEecCCCHHHHHHHHHHHHHcCCCCccccCCCCCCcc
Confidence 3489999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccCcccccChHHHHHHHHHHhcc--------------------CCcc--ccCCCceEEEEEecCCCcccccccce
Q psy3753 128 SDELSGVSFDEIIDTRPYAEILRQWSTF--------------------HPEF--AYLPRKFKISISGSQEDRAAIFVHDI 185 (928)
Q Consensus 128 ~cp~ag~~~~~~~D~~~la~~l~~~~~~--------------------~~~~--~~LP~Kfki~vsgc~~~c~~~~~~Di 185 (928)
+||+++.|+ +..|+.+++.+|.+.+.. +|.| .+||+||||+||||+++|+.+.++||
T Consensus 84 ~~p~~~~~~-~~~d~~~~a~~l~~~l~~~~~~~~e~wl~~~~~~~~~~~p~~~~~~LP~Kfkiavsg~~~~~~~~~~~Di 162 (497)
T 1aop_A 84 CTSNPYESQ-LHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDM 162 (497)
T ss_dssp ECSSCSSTT-HHHHHHHHHHHHHHHTCC--------------------------CCCSSCBCEEEECTTBCTTCGGGSSE
T ss_pred cCCcccCCh-hHHHHHHHHHHHHHHhhhccchhhhhhccccccccccCCcccccCCCCCcEEEEEecCCccccCcccCCe
Confidence 999998777 578999999999998863 4655 57999999999999999999999999
Q ss_pred EEEEEEecCCeeeEEEEEcccCCCC-------CcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhh
Q psy3753 186 GLRAIKNKLGKIGFCVIVGGGMGRT-------PIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSI 258 (928)
Q Consensus 186 g~ia~~~~~~~~gf~v~vGG~~g~~-------p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~ 258 (928)
||+++.+++...||+|++||++|++ |++|+.+ .+++++++++++++++++|+++|+|.+|+++||+++++++
T Consensus 163 g~i~~~~~g~~~G~~v~vGG~~g~~~~~~~~~p~~~~~~-~~v~~~~~~~~~~ai~~~~~~~g~r~~r~~aR~~~li~~~ 241 (497)
T 1aop_A 163 NFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEF-GYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERV 241 (497)
T ss_dssp EEEEEEETTEEEEEEEEECCBCCCCTTCTTCCCBCCEEE-EEEEGGGHHHHHHHHHHHHHHHSCSSCSTTCSHHHHHHHH
T ss_pred EEEEEEECCceeeEEEEecccccccCCcccCCCcccccc-CCcCHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHh
Confidence 9999987433489999999999976 9999988 5999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCCccHHHHHhhhhcccCCCCcCCCcchhhhHhhhccCccccccccccccceeeCCEEEEE
Q psy3753 259 GIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVI 338 (928)
Q Consensus 259 G~e~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~gv~~qk~~g~~~v~ 338 (928)
|+++|++.++++++.... ++..... ....++. |.++|+ +|+|+|+
T Consensus 242 G~e~f~~~v~~~~~~~~~------------------~~~~~~~-----------~~~~~~~-----G~~~q~-~G~~~v~ 286 (497)
T 1aop_A 242 GVETFKAEVERRAGIKFE------------------PIRPYEF-----------TGRGDRI-----GWVKGI-DDNWHLT 286 (497)
T ss_dssp CHHHHHHHHHHHHTCCCB------------------CCCCCCC-----------CBCCCCC-----EEEECS-TTEEEEE
T ss_pred CHHHHHHHHHHHhCCCCC------------------CCCCCCc-----------cccccce-----eEEEcC-CceEEEE
Confidence 999999999988753111 0000000 0112233 445554 6999999
Q ss_pred EEeccCCCCCCCc---CHH-HHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceec
Q psy3753 339 LSLKRINMAPGDI---TSE-QMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIIC 414 (928)
Q Consensus 339 v~~~~~~~p~G~l---~~~-qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~a 414 (928)
++++. |++ +++ +|+.||+||++|| |.+|+|++|||+|.+++++++++++++|.+.|+.+..+..+|+++|
T Consensus 287 v~~p~-----G~l~~~~~~~~l~~ladia~~yg-g~irlT~~qni~l~gv~~~~l~~l~~~L~~~Gl~~~~~~~~r~i~a 360 (497)
T 1aop_A 287 LFIEN-----GRILDYPARPLKTGLLEIAKIHK-GDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMA 360 (497)
T ss_dssp ECCGG-----GEECEETTEEHHHHHHHHHHHCS-SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTTCCCCHHHHTEEE
T ss_pred EECCC-----CcccCCCHHHHHHHHHHHHHHhC-CEEEEcCCCCEEEecCCHHHHHHHHHHHHHCCCCCCCCCceeeeec
Confidence 88765 999 778 9999999999998 9999999999999999999999999999999999844334799999
Q ss_pred cCCcccccccccchHHHHHHHHHHhc-----ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEeeCCCcEEEEEEcCC
Q psy3753 415 CPGGDFCSLANTKSLPIAKNIMKYFS-----KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGS 489 (928)
Q Consensus 415 C~G~~~C~~a~~dt~~la~~L~~~~~-----~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~~~~g~~i~vGG~ 489 (928)
|+|.++|+++++||+.++..|.+++. ..+ .+.|+|||||||||+|++|+.+||||+|+++ .+|+|++||+
T Consensus 361 C~G~~~C~~a~~dt~~~a~~l~~~l~~~~~~~~l--~p~~~~i~vSGCpn~C~~~~~aDIGi~G~~~---g~y~i~lGG~ 435 (497)
T 1aop_A 361 CVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGV--SDEHIVMRVTGCPNGCGRAMLAEVGLVGKAP---GRYNLHLGGN 435 (497)
T ss_dssp CCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTC--TTCCCCEEEESSTTCTTCGGGSSEEEEEEET---TEEEEEECCC
T ss_pred ccCcccCcchhhhHHHHHHHHHHHHHHHHhhcCC--CCcceEEEEECCcchhhhhccCCEEEEEecC---CCEEEEECCC
Confidence 99999999999999987766666554 222 1349999999999999999999999999863 3699999999
Q ss_pred CCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhhhc
Q psy3753 490 QGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLYEN 547 (928)
Q Consensus 490 ~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~e~ 547 (928)
.+ ++++|+.+.++++.+++++++++++++|.+++++.||+ ++.+.|.|+.+|.+.
T Consensus 436 ~~-~~~~g~~~~~~v~~~ei~~~l~~l~~~y~~~~~~~Erf--~~~i~R~G~~~~~~~ 490 (497)
T 1aop_A 436 RI-GTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGF--GDFTVRAGIIRPVLD 490 (497)
T ss_dssp TT-SCSCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCTTCCH--HHHHHHTTSSCCCSS
T ss_pred CC-CcchhhhhhcCCCHHHHHHHHHHHHHHHHHhCCCCCcH--HHHHHHcCcHHhhhh
Confidence 87 78899999889999999999999999999999999999 999999999988744
No 6
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=100.00 E-value=8.5e-49 Score=425.44 Aligned_cols=215 Identities=40% Similarity=0.781 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchh
Q psy3753 697 KTVLDALNNIVTDY-KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSE 775 (928)
Q Consensus 697 ~~a~~~I~~~~~~~-~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~ 775 (928)
..+.++|++++++| ++++|+|| ||||+|||||+.+.+++++|+|+|||.+||||++|+++++++||++++++.|....
T Consensus 40 ~~a~~~l~~a~~~~g~~i~Va~S-GkDS~vLL~Ll~~~~~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~~ 118 (275)
T 2goy_A 40 KSPQDILKAAFEHFGDELWISFS-GAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRL 118 (275)
T ss_dssp SCHHHHHHHHHHHHSTTEEEECC-SSTTHHHHHHHHHHCTTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCCHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEee-cHHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCCccC
Confidence 46889999999999 79999999 99999999999999999999999999999999999999999999999999988644
Q ss_pred hhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeeccccc-ccccCCcceeecCC----CCCeEEEEeC
Q psy3753 776 VNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQS-ITRSNLVLKEKDII----HNGIIKFNPL 850 (928)
Q Consensus 776 ~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES-~~R~~~~~~~~d~~----~~~~~~~~PI 850 (928)
++++..+.|.+.++.. ...+||.++|++|+++++++.++|++|+|++|| ..|..++.++.+.. .++.++++||
T Consensus 119 ~~~~~~~~g~~~~~~~--~~~~cc~~~K~~pl~r~l~~~~~~itG~r~dds~~~R~~~~~~~~d~~~~~~~~g~~~i~PL 196 (275)
T 2goy_A 119 LEPLVKEKGLFSFYRD--GHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPL 196 (275)
T ss_dssp HHHHHHHHCSCHHHHH--CTHHHHHHHTHHHHHHHHHTCSEEECCCCGGGTTSCSCCCCSEEECTTTCCSSSCCEEECTT
T ss_pred HHHHHHHhCCCCcccc--CHHHHHHHHHHHHHHHHHHhcCchhcCchhhhhhhhhhhCcccccccccccCCCCeEEEech
Confidence 5555666776555443 257899999999999999999999999999999 79999888887631 2568899999
Q ss_pred cCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCCCCCccccccccCCCCcccccCcC
Q psy3753 851 YNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHV 914 (928)
Q Consensus 851 ~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGlh~ 914 (928)
++||++|||.|+++++|||||||++||+||||++||.|+..|+++|+|||||++..|+|||||.
T Consensus 197 ~~wt~~dV~~Yi~~~~lp~~~Ly~~Gy~siGC~~Ct~~~~~g~~~R~gRw~w~~~~k~ecGlh~ 260 (275)
T 2goy_A 197 SSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHA 260 (275)
T ss_dssp TTCCHHHHHHHHHHTTCCCCGGGGGTCSSCCCGGGBCCCCTTCCGGGGBSTTC-----------
T ss_pred HhCCHHHHHHHHHHhCCCCChHHHcCCCCCCCccCCCCCCCCCccccCccccCCCCCccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999996
No 7
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-48 Score=416.10 Aligned_cols=213 Identities=31% Similarity=0.486 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcCC---CceEEEEcCCCChHHHHHHHHHHHHHcCC----eEEEEe
Q psy3753 698 TVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNF---DINIFTLNTGRLHSETLNMLNKIYLTYKY----KIKVYY 770 (928)
Q Consensus 698 ~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~~---~i~vvf~DTg~efpeT~~~i~~~~~~~g~----~i~~~~ 770 (928)
.++++|++++++|++++|+|||||||+|||||+.++.+ +++|+|+|||.+||||++|+++++++||+ +++++.
T Consensus 29 ~~~~~l~~a~~~~~~v~va~SGGkDS~vLL~ll~~~~~~~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~ 108 (261)
T 2oq2_A 29 TPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYK 108 (261)
T ss_dssp SHHHHHHHHHHHCSSEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEEC
T ss_pred CHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCccCCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEe
Confidence 67899999999999999999999999999999999987 89999999999999999999999999999 999999
Q ss_pred cCch-hhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCCCCeEEE
Q psy3753 771 PLNS-EVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKF 847 (928)
Q Consensus 771 p~~~-~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~ 847 (928)
|... .+.++..++|...+ .. .+.+||.++|++||+++++ +.++|++|+|++||..|+.++.++.+. +++.+++
T Consensus 109 ~~~~~~~~~~~~~~G~~~~-~~--~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds~~R~~~~~~~~~~-~~~~~ki 184 (261)
T 2oq2_A 109 PDGCESEADFASKYGDFLW-EK--DDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDE-LNGILKI 184 (261)
T ss_dssp STTCSSHHHHHHHHCTTHH-HH--CHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGCGGGGGCCSEEEET-TTTEEEE
T ss_pred cCCccCHHHHHHHhCCCcc-cc--ChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccchHHHccCCceeecC-CCCeEEE
Confidence 8742 23455666775332 22 2478999999999999997 668999999999999999998888764 4678999
Q ss_pred EeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCCCCCccccccccCCCCcccccCcCCC
Q psy3753 848 NPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHVLD 916 (928)
Q Consensus 848 ~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGlh~~~ 916 (928)
+||++||++|||.|++.++|||||||++||+||||++||.+++.|+++|+||| .+..|+|||||...
T Consensus 185 ~PL~~wt~~dV~~Yi~~~~lp~~pLy~~Gy~siGC~~ct~~~~~~~~eR~gRw--~~~~k~ecGlh~~~ 251 (261)
T 2oq2_A 185 NPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRW--KGKAKTECGIHEAS 251 (261)
T ss_dssp CTTTTCCHHHHHHHHHHHTCCCCGGGGGTCSSCCBGGGCCCCCTTSCTTTTTC-------CCCTTTCCG
T ss_pred echHhCCHHHHHHHHHHcCCCCCchhhCCCCCCCCcCCCCcCCCCCCcccccc--CCCCCcccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999 67789999999743
No 8
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=100.00 E-value=5e-46 Score=398.78 Aligned_cols=211 Identities=28% Similarity=0.430 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchh
Q psy3753 697 KTVLDALNNIVTDYK-PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSE 775 (928)
Q Consensus 697 ~~a~~~I~~~~~~~~-~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~ 775 (928)
..+.++|++++++|+ +++|+|||||||+|||||+.+..+++.++|+|||.+||||++|+++++++||++++++.|...
T Consensus 31 ~~~~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~- 109 (252)
T 2o8v_A 31 LDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES- 109 (252)
T ss_dssp SCHHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC-
T ss_pred CCHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC-
Confidence 378899999999996 899999999999999999999999999999999999999999999999999999999998764
Q ss_pred hhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCC--cEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCC
Q psy3753 776 VNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGN--KSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNW 853 (928)
Q Consensus 776 ~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~--~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dW 853 (928)
...+..++| ..+......+.+||.++|+.||++++++. .+|++|+|++||..|..++.++. .++..+++||++|
T Consensus 110 ~~~~~~~~g-~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds~~R~~l~~~~~---~~~~~~i~PL~~w 185 (252)
T 2o8v_A 110 AAWQEARYG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAI---QRGVFKVLPIIDW 185 (252)
T ss_dssp HHHHHHHTC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTTTCCTTSCSEEE---SSSSEEECGGGSC
T ss_pred HHHHHHHcC-CccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccccccccccCceeec---CCCeEEEechhhC
Confidence 334556677 44433333458899999999999999754 57999999999999999887764 2467899999999
Q ss_pred CHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCCCCCccccccccCCCCcccccCcCC
Q psy3753 854 LEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHVL 915 (928)
Q Consensus 854 t~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~~~~~r~gRW~~~~~~~~ecGlh~~ 915 (928)
|.+|||.|++.++|||||||++||+||||++||.++..|+++|+||| .| .|||||||..
T Consensus 186 t~~dV~~y~~~~~lp~~~Ly~~Gy~siGC~~Ct~~~~~g~~~r~gRw--~~-~k~ecglh~~ 244 (252)
T 2o8v_A 186 DNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRF--FG-LKRECGLHEG 244 (252)
T ss_dssp CHHHHHHHHHHTTCCCCTTTTTTCSSCCBCTTTCC-----------------CCSCCCSCCC
T ss_pred CHHHHHHHHHHcCCCCChHHhCCCCCCCCcCcCCcCCCCCCcccccc--CC-CCccCCCCCC
Confidence 99999999999999999999999999999999999999999999999 45 8999999974
No 9
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=100.00 E-value=8.9e-44 Score=400.22 Aligned_cols=236 Identities=17% Similarity=0.255 Sum_probs=208.5
Q ss_pred ceeeCC---EEEEEEEeccCCCCCCC-cCHHHHHHHHHHHHHhCCCcEEeccC-CCEEEccCCcCCHHHHHHHHH-HCCC
Q psy3753 328 KHKING---YIIVILSLKRINMAPGD-ITSEQMNFIANLADHYSFSELRVTHT-QNIVLSDVTKDNLFNLWTEIK-QYGL 401 (928)
Q Consensus 328 ~qk~~g---~~~v~v~~~~~~~p~G~-l~~~qlr~La~ia~~~g~g~irlT~~-q~i~l~gi~~~~~~~~~~~L~-~~Gl 401 (928)
|++.|| +|||||++|+ |+ +|++||+.||+||++||+|.+|||++ |||+|++++++++++++++|. ++|+
T Consensus 88 pd~fP~v~~~~tVRV~~P~-----Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi~~e~le~l~~eL~~~~Gl 162 (437)
T 3or1_A 88 PEMFPGVAHFHTVRLAQPA-----AKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFEMTHNLNT 162 (437)
T ss_dssp TTTCGGGSBCCEEEECCCG-----GGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECCCGGGHHHHHHHHHHHSCC
T ss_pred cccCcCcceEEEEEEeCCC-----CCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecCCHHHHHHHHHHHHhhcCc
Confidence 345444 8999988755 97 99999999999999999999999985 999999999999999999998 8999
Q ss_pred CCCCccc-ccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCccc-ccccEEEEeEeeC
Q psy3753 402 SESNINL-LTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHH-HIGNIGILGLNKN 477 (928)
Q Consensus 402 ~~~~~~~-~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~-~~aDig~ig~~~~ 477 (928)
+++++++ +||+++|+|+++|+++++||++++.+|.++|. ...+.+|+||||+||||||+|+++ +++||||+|++++
T Consensus 163 ~~ggsG~~vRnivaC~G~~~C~~a~~DT~~la~~L~~~l~~~~~~~~LP~KfKI~iSGCpN~C~~~v~~aDIGiiG~~r~ 242 (437)
T 3or1_A 163 DLGGSGSNLRTPESCLGISRCEFACYDTQLMCYQLTQDYQDELHRPAFPYKFKFKFDGCPNGCVASMARSDFAVIGTWKD 242 (437)
T ss_dssp CBCCCSSSBCCCEECCGGGSCSSCCSCHHHHHHHHHHHTHHHHHSCCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESS
T ss_pred CccccCCcceeeeccccccccCccccccchhhhhhHhhhhhccccccCCceeeEeeccccccccchhhhccccccccccC
Confidence 9988774 99999999999999999999999999999987 233455669999999999999999 8999999998532
Q ss_pred ------------------------------------------------------------------------------CC
Q psy3753 478 ------------------------------------------------------------------------------GN 479 (928)
Q Consensus 478 ------------------------------------------------------------------------------~~ 479 (928)
.+
T Consensus 243 ~i~id~~~v~~~~~~e~~~~~~a~~g~~~~~~di~~~vv~~CPt~ai~~~~~~l~Id~~~C~~Cg~Ci~~CP~al~~~~~ 322 (437)
T 3or1_A 243 DIKIDQEAVKAYVGGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMTYESGTLSIDNKNCTRCMHCINTMPRALKIGDE 322 (437)
T ss_dssp CCEECHHHHHHHHHTSSCGGGGTTTTSCCCSCCHHHHTTTTCTTCCEEEETTEEEECGGGCCCCSHHHHHCTTTEECCSS
T ss_pred CCccCHHHHHHHhhcCCCCcccccccCcCcccccchhhhccCcHHheeecCCEEEEccccCCchhhhHhhCcHhhccCCC
Confidence 25
Q ss_pred cEEEEEEcCCCC--CCCcccccccCCCC----cccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhhhc---ccc
Q psy3753 480 EYFQILIGGSQG--NKLNFGKIIGPSFS----ADQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLYEN---DFI 550 (928)
Q Consensus 480 ~g~~i~vGG~~~--~~~~~g~~~~~~v~----~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~e~---~~~ 550 (928)
.||.|++||+++ .++++|+++.+|++ ++|++++++++++||+++++++||+ |+.|+|.||.+|++. ++.
T Consensus 323 ~G~~ilvGgk~~i~~g~~l~~~~~pf~~~~~p~~ei~~~i~~i~~~~~e~gk~~ER~--ge~i~R~G~~~f~e~~~l~~~ 400 (437)
T 3or1_A 323 RGASILVGAKAPVLDGAQMGSLLIPFIAAEEPFDEVKEVIENIWEWWMEEGKNRERL--GETMKRVGFQKLLEVTGTKAV 400 (437)
T ss_dssp EEEEEEECCBCSTTTCCBCCEEEEEEECCCTTCHHHHHHHHHHHHHHHHHSCTTCCH--HHHHHHHCHHHHHHHTTCCCC
T ss_pred CceEEEEeCCCCcccCCccceeeeecccCCCCHHHHHHHHHHHHHHHHHcCCCCccH--HHHHHHcCHHHHHHHHCCCCC
Confidence 799999999998 68999999999997 8999999999999999999999999 999999999999988 667
Q ss_pred hhhhccccccccccccchHHHhh
Q psy3753 551 EENVKLLEDHVIVPFKFLKKYLK 573 (928)
Q Consensus 551 ~~~~~~~~~~~~~p~~~w~e~~~ 573 (928)
|+|++.|+. |||+||+|+..
T Consensus 401 ~~~v~~pr~---~py~~~~~~~~ 420 (437)
T 3or1_A 401 PQHVSEPRH---NPYIFFKEEEV 420 (437)
T ss_dssp GGGBSSCCS---SCCCCCCGGGS
T ss_pred hHHhcCCCC---CCeEecchhhc
Confidence 777766655 55567876543
No 10
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=100.00 E-value=4.7e-42 Score=387.21 Aligned_cols=230 Identities=16% Similarity=0.246 Sum_probs=205.5
Q ss_pred CEEEEEEEeccCCCCCCC-cCHHHHHHHHHHHHHhCCCcEEec-cCCCEEEccCCcCCHHHHHHHHH--HCCCCCCCccc
Q psy3753 333 GYIIVILSLKRINMAPGD-ITSEQMNFIANLADHYSFSELRVT-HTQNIVLSDVTKDNLFNLWTEIK--QYGLSESNINL 408 (928)
Q Consensus 333 g~~~v~v~~~~~~~p~G~-l~~~qlr~La~ia~~~g~g~irlT-~~q~i~l~gi~~~~~~~~~~~L~--~~Gl~~~~~~~ 408 (928)
++|||||++|+ |+ +|++||+.|||||++||+|.+||| ++|||+|++++++++++++++|. +.|++++++++
T Consensus 94 ~~~tvRv~~P~-----Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv~~e~l~~i~~eL~~~~~Gl~~ggsG~ 168 (418)
T 3mm5_A 94 HFHTMRINQPS-----GWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDLGNLEIPFDIGGSGS 168 (418)
T ss_dssp BCEEEEECCCG-----GGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEECHHHHHHHHHHHHHSSSCCCBCCCSS
T ss_pred eEEEEEEeCCC-----CcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCCCHHHHHHHHHHHhcccccCCcCCccc
Confidence 38999988755 98 999999999999999999999999 89999999999999999999999 99999887764
Q ss_pred -ccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCccc-ccccEEEEeEeeC-------
Q psy3753 409 -LTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHH-HIGNIGILGLNKN------- 477 (928)
Q Consensus 409 -~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~-~~aDig~ig~~~~------- 477 (928)
+||+++|+|+++|+++++||++++.+|.++|. ...+.+|+||||+||||||+|+++ +++||||+|++++
T Consensus 169 ~vRni~aC~G~~~C~~a~~Dt~~la~~L~~~l~~~~~~~~LP~KfKI~iSGCpN~C~~~~~~~DIGiiG~~r~~~~iD~e 248 (418)
T 3mm5_A 169 DLRTPSACMGPALCEFACYDTLELCYDLTMTYQDELHRPMWPYKFKIKCAGCPNDCVASKARSDFAIIGTWKDDIKVDQE 248 (418)
T ss_dssp SBCCCEECCGGGTCTTCSSCHHHHHHHHHHHTHHHHHSCCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHH
T ss_pred cccceEecCCcccccchhhhHHHHHHHHHHHHHHhhhhccCCcceEEeeeccccchhhHHHhccccccccccccccccHH
Confidence 99999999999999999999999999999886 223455669999999999999998 8999999998632
Q ss_pred -------------------------------------------------------CCcEEEEEEcCCCC--CCCcccccc
Q psy3753 478 -------------------------------------------------------GNEYFQILIGGSQG--NKLNFGKII 500 (928)
Q Consensus 478 -------------------------------------------------------~~~g~~i~vGG~~~--~~~~~g~~~ 500 (928)
.+.||.|++||+.+ .++++|+++
T Consensus 249 ~~~~~~~gc~i~~~cv~~CPt~Ai~~~~~~~~id~~~Ci~Cg~Ci~~CP~~~~~~~~~g~~I~vGGk~~~~~g~~lg~~~ 328 (418)
T 3mm5_A 249 AVKEYASWMDIENEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMPKALKPGDERGATILIGGKAPFVEGAVIGWVA 328 (418)
T ss_dssp HHHHHHTTSCHHHHTGGGCTTCCEEECSSCEEECTTTCCCCCHHHHHCTTTEECCSSEEEEEEECCBCSTTTCCBCCEEE
T ss_pred HHhhhccccccCccccccCCccccccCCceeEEChhhcCccChhHHhCcHhhccCCCCCeEEEEeCCCccccccccccee
Confidence 25799999999984 689999999
Q ss_pred cCCCC----cccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhhhc---ccchhhhccccccccccccchHHHh
Q psy3753 501 GPSFS----ADQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLYEN---DFIEENVKLLEDHVIVPFKFLKKYL 572 (928)
Q Consensus 501 ~~~v~----~~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~e~---~~~~~~~~~~~~~~~~p~~~w~e~~ 572 (928)
.+|++ ++|+++++++++++|+++++++||+ ++.|+|.||..|.+. ++.|+|+..|+.| ||+||+++.
T Consensus 329 ~pf~~~~~p~eei~~~ie~i~~~~~e~g~~~ER~--g~~i~RiG~~~F~e~v~~~~~~~~v~~pr~~---py~~~~~~~ 402 (418)
T 3mm5_A 329 VPFVEVEKPYDEIKEILEAIWDWWDEEGKFRERI--GELIWRKGMREFLKVIGREADVRMVKAPRNN---PFMFFEKDE 402 (418)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHHCCTTCCH--HHHHHHHCHHHHHHHTTCCCCGGGBSSCCSS---CCCCCCGGG
T ss_pred eccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcH--HHHHHHcCHHHHHHHHCCCCChHHhcCCCCC---CeEecCHHH
Confidence 99997 7999999999999999999999999 999999999999888 7778888766555 555687654
No 11
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=100.00 E-value=1e-39 Score=350.42 Aligned_cols=176 Identities=19% Similarity=0.253 Sum_probs=155.0
Q ss_pred chhhhHHHHHH-HHHHHHHhcC----CeEEEEcChHHHHHHHHHHHhc--------------------C--CCceEEEEc
Q psy3753 691 PLNSFVKTVLD-ALNNIVTDYK----PAVFASSLAAEDMVLTDLILRN--------------------N--FDINIFTLN 743 (928)
Q Consensus 691 ~l~~~~~~a~~-~I~~~~~~~~----~~~vs~SGGKDS~vll~L~~~~--------------------~--~~i~vvf~D 743 (928)
.++.+++.+++ +|++++++|+ ++++||||||||+|||||+.++ . ++++|+|+|
T Consensus 34 ~~q~qir~S~~~iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiD 113 (308)
T 3fwk_A 34 QTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFID 113 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEe
Confidence 47788888885 9999999996 4999999999999999999885 1 589999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeecc
Q psy3753 744 TGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRR 823 (928)
Q Consensus 744 Tg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~ 823 (928)
||++||||++|++++.++||++|+++.|.... . ...+||.++|+.| +.++||+|+|+
T Consensus 114 TG~~FpET~ef~d~~~~~ygL~L~v~~p~~~~-----------~------~~~~cc~~~K~~P------~~~AwitG~RR 170 (308)
T 3fwk_A 114 HDDTFKTLENFIEETSLRYSLSLYESDRDKCE-----------T------MAEAFETFLQVFP------ETKAIVIGIRH 170 (308)
T ss_dssp CTTCCHHHHHHHHHHHHHTTEEEEECCTTSCC-----------C------HHHHHHHHHHHCT------TCCEEECCCCT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEeCCCCCH-----------H------HHHHHHHHHHhCC------CCCEEEEEeec
Confidence 99999999999999999999999999886331 0 2368999999998 47899999999
Q ss_pred cccccccCCcceeec-CCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCC
Q psy3753 824 TQSITRSNLVLKEKD-IIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTE 890 (928)
Q Consensus 824 ~ES~~R~~~~~~~~d-~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~ 890 (928)
+| ..|++++.++.+ ..|++.++++||++||+.|||.||+.++|||||||++||+||||++||.|++
T Consensus 171 ~e-~~Ra~l~~~e~~d~~w~~~iKVnPL~dWT~~DVW~YI~~~~LPynpLYd~GY~SIGC~~CT~pnp 237 (308)
T 3fwk_A 171 TD-PFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNP 237 (308)
T ss_dssp TS-TTCTTCCSEEECCTTSCSCEEECTTTTCCHHHHHHHHHHHTCCCCGGGGGTCSSCCCTTTBCCCG
T ss_pred CC-cccCCCCeeeccCCCCCCeEEEechhhCCHHHHHHHHHHcCCCCCcHHhcCCCCCCCCccCCCCh
Confidence 96 689999888764 3467899999999999999999999999999999999999999999999998
No 12
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=100.00 E-value=1.1e-39 Score=367.81 Aligned_cols=233 Identities=20% Similarity=0.359 Sum_probs=203.6
Q ss_pred ceeeCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCC-----
Q psy3753 328 KHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLS----- 402 (928)
Q Consensus 328 ~qk~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~----- 402 (928)
.|+++++|+|||+. | |.+|++||+.||+||++||+|.+|||++|||+|+|++++++++++++|.+.||.
T Consensus 56 ae~g~~~~tvRv~~-----p-G~lt~~qLr~LadiA~kyg~G~irlTtrqnI~l~gi~~e~l~~l~~~L~~~Gl~~~~~~ 129 (386)
T 3or1_B 56 AKNGDKVFTVRCGA-----A-RLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADLKTRKFAAGSFK 129 (386)
T ss_dssp ETTSCEEEEEEECC-----C-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHHTTCBCTTSCBS
T ss_pred ccCCCcEEEEEeCC-----C-ceeCHHHHHHHHHHHHHhCCCeEEECCCCeEEEecCCHHHHHHHHHHHHhcCCCccccC
Confidence 46678899998764 5 999999999999999999999999999999999999999999999999999964
Q ss_pred --CCCcc-cccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEee-
Q psy3753 403 --ESNIN-LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNK- 476 (928)
Q Consensus 403 --~~~~~-~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~- 476 (928)
.++++ .+|++++|+|+++|+.+++||.+++.+|.+++. ...+.+|+||||+||||||+|++++++||||+|+++
T Consensus 130 ~~~g~~G~~vRni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP~K~kI~vsGCpn~C~~~~~~Dig~vg~~r~ 209 (386)
T 3or1_B 130 FPIGGTGASISNIVHTQGWVYCHTPATDASGPVKAVMDELFEEFTSMRLPAIVRVSLACCINMCGAVHCSDIGLVGIHRK 209 (386)
T ss_dssp SCBCCCSSSCCCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHHHHSCCCSSSCCCEEEESSTTCCSSGGGSSEEEEEECCS
T ss_pred CCccccCCcccceEecCCccccchhHHHHHHHHHHHHHHHHHhhhccccceeeEEeeccCcccccccccccccccccccc
Confidence 34555 499999999999999999999999999988776 334456669999999999999999999999999853
Q ss_pred ----------------------------------CC--------------------------------CcEEEEEEcCCC
Q psy3753 477 ----------------------------------NG--------------------------------NEYFQILIGGSQ 490 (928)
Q Consensus 477 ----------------------------------~~--------------------------------~~g~~i~vGG~~ 490 (928)
++ +.||.|++||+.
T Consensus 210 ~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~~~~~g~~i~vGGk~ 289 (386)
T 3or1_B 210 PPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSDGTGDGIAIMVGGKI 289 (386)
T ss_dssp CCCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBC
T ss_pred cceechhhhcccccchhhhhhCchhhccccccccCCccccccccCCCcCCccccHHHhCcHhhCcCCCCceEEEEEcccc
Confidence 12 369999999999
Q ss_pred C---CCCcccccccCCCCc-----ccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhhhc---ccchhhhccccc
Q psy3753 491 G---NKLNFGKIIGPSFSA-----DQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLYEN---DFIEENVKLLED 559 (928)
Q Consensus 491 ~---~~~~~g~~~~~~v~~-----~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~e~---~~~~~~~~~~~~ 559 (928)
+ .+|++|+++.++++. +|+++++++++++|+++++++||+ |+.|+|.||..|.+. ++.|+|+..|+.
T Consensus 290 ~~~~~~~~~~~~l~~~~~~e~~~~~e~~~~i~~i~~~~~e~g~~~ER~--g~~i~R~G~~~f~~~~~~~~~~~~v~~~r~ 367 (386)
T 3or1_B 290 SNRIKVPSFSKVVVAFVPNEPPRWPTMAKIVKKIVEVYAEDARKYERI--GDWIHRIGWETFYEKTGLEFSHHCIDDFRD 367 (386)
T ss_dssp CCSSSCCBCCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHCCTTCCH--HHHHHHHCHHHHHHHHCCCCCGGGSCCSSG
T ss_pred CcccccccccceeecccccCCccHHHHHHHHHHHHHHHHHHCCcCCCH--HHHHHHcCHHHHHHHHCCCCChHHhcCccc
Confidence 8 479999999998865 699999999999999999999999 999999999999887 778888877655
Q ss_pred cccccccchHHH
Q psy3753 560 HVIVPFKFLKKY 571 (928)
Q Consensus 560 ~~~~p~~~w~e~ 571 (928)
|| |.+|+.-
T Consensus 368 ~~---~~~~~~~ 376 (386)
T 3or1_B 368 PA---YYTWRQS 376 (386)
T ss_dssp GG---GGGBCCS
T ss_pred Cc---ceEeeee
Confidence 54 4567543
No 13
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=100.00 E-value=2e-38 Score=356.14 Aligned_cols=240 Identities=17% Similarity=0.274 Sum_probs=214.7
Q ss_pred cccccccccceee---CCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHH
Q psy3753 319 ENWVHQNTKKHKI---NGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTE 395 (928)
Q Consensus 319 ~~w~~~gv~~qk~---~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~ 395 (928)
..+...|++.|++ +++|||||++ | |.+|++||+.||+||++||+|.+|||++|||+|+|++++++++++++
T Consensus 33 ~e~~~~Gv~~~~~e~gd~~~~vRv~~-----p-~~lt~~qlr~ladiA~kyg~G~lrlTtrqni~l~gv~~~~l~~l~~~ 106 (366)
T 3mm5_B 33 HEVVKPGVIKRVAESGDVIYVVRFGT-----P-RLLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINE 106 (366)
T ss_dssp EEEEETTEEEEEETTSCEEEEEEECC-----C-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHH
T ss_pred cccCCCCEEEeeccCCCceEEEEECC-----c-cccCHHHHHHHHHHHHHhCCCeEEEcCCCeEEEecCCHHHHHHHHHH
Confidence 3344558888887 7899999876 4 49999999999999999999999999999999999999999999999
Q ss_pred HHHC-CCCCCCc-c------cccceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccc
Q psy3753 396 IKQY-GLSESNI-N------LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHH 465 (928)
Q Consensus 396 L~~~-Gl~~~~~-~------~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~ 465 (928)
|.+. |+.++++ | .+||+++|+|+++|+.+++||++++.+|.++|. ...+.+|+||||+||||||+|++++
T Consensus 107 L~~~~Gl~~g~~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP~k~kI~vsgC~~~C~~~~ 186 (366)
T 3mm5_B 107 VQERVGFPCGGTWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLPAMCRISLACCANMCGAVH 186 (366)
T ss_dssp HHHHHCCCBCCCEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHHHHHSCCBSSCCCEEEESSTTCSSSGG
T ss_pred HHHhcCCCcccccCCcccccceeeeecCCCccccchHHHHHHHHHHHHHHHHHHhhccccccccceeccccCcccccccc
Confidence 9998 9998887 5 499999999999999999999999999888876 2334456699999999999999999
Q ss_pred cccEEEEeEee-------------------------------------------------------------CCCcEEEE
Q psy3753 466 IGNIGILGLNK-------------------------------------------------------------NGNEYFQI 484 (928)
Q Consensus 466 ~aDig~ig~~~-------------------------------------------------------------~~~~g~~i 484 (928)
.+||||+|+++ ..+.|+.+
T Consensus 187 ~~Dig~~g~~r~~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~~~~g~~i 266 (366)
T 3mm5_B 187 ASDIAIVGIHRTPPIPNDEAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAI 266 (366)
T ss_dssp GSSEEEEEECCSCCCCCHHHHHHHCCHHHHHHTCTTCCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCCCTTTCEEEE
T ss_pred ccccccccccccceEEcchhccccccccchhccCCccceEecCCCCeEEEehhhCCCcchHHHhCCHhhcccccCCceEE
Confidence 99999999842 12569999
Q ss_pred EEcCCCC---CCCcccccccCCCCc-----ccHHHHHHHHHHHHHHhcccccccccccceeehhhhhhhhc---ccchhh
Q psy3753 485 LIGGSQG---NKLNFGKIIGPSFSA-----DQVPDIINRILKVYLRRCYLMCKIIKNDTIVNDNWKMLYEN---DFIEEN 553 (928)
Q Consensus 485 ~vGG~~~---~~~~~g~~~~~~v~~-----~e~~~~i~~l~~~y~e~~~~~eR~~k~~~i~r~g~~~~~e~---~~~~~~ 553 (928)
++||+.+ .++++|+.+.++++. +|+.+++++++++|+++++++||+ ++.|+|.||..|.+. ++.|+|
T Consensus 267 ~vGgk~~~~~~~~~lg~~~~~~~~~~~p~~~ev~~~v~~i~~~y~~~g~~~eR~--~~~i~r~G~~~f~~~~~~~~~~~~ 344 (366)
T 3mm5_B 267 MVGGKLSEARRMPELSKVVVPWVPNEPPRWPTLVKYVKQILEAWAANANKHERL--IEWVDRIGWERFFELTGLEFTQHL 344 (366)
T ss_dssp EECCBCSCTTSCCBCCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHCCTTCCH--HHHHHHHCHHHHHHHHTCCCCGGG
T ss_pred EEcCccccccccCcccchhhccccCCCcchHHHHHHHHHHHHHHHHhCCccccH--HHHHHHhCHHHHHHHHCCCCChhH
Confidence 9999998 479999999998874 899999999999999999999999 999999999888776 889999
Q ss_pred hcccccccccccc
Q psy3753 554 VKLLEDHVIVPFK 566 (928)
Q Consensus 554 ~~~~~~~~~~p~~ 566 (928)
+..|+.+||+.++
T Consensus 345 ~~~~r~~p~~~~~ 357 (366)
T 3mm5_B 345 IDDYRITPYFYSE 357 (366)
T ss_dssp SCCCTTSBGGGGG
T ss_pred hcCcccCCceeee
Confidence 9999999998876
No 14
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=100.00 E-value=4.2e-37 Score=346.84 Aligned_cols=213 Identities=23% Similarity=0.325 Sum_probs=193.9
Q ss_pred eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCc------cccccCCccc
Q psy3753 51 AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMH------AIQTSGNCIR 124 (928)
Q Consensus 51 ~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~------~~~~~gd~vR 124 (928)
.|||||++| |++|++||++||+||++||+|.++||+||||||+||+.+++++++++|.+.||. +.+++|+.+|
T Consensus 62 ~~tvRv~~p-G~lt~~qLr~LadiA~kyg~G~irlTtrqnI~l~gi~~e~l~~l~~~L~~~Gl~~~~~~~~~g~~G~~vR 140 (386)
T 3or1_B 62 VFTVRCGAA-RLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADLKTRKFAAGSFKFPIGGTGASIS 140 (386)
T ss_dssp EEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHHTTCBCTTSCBSSCBCCCSSSCC
T ss_pred EEEEEeCCC-ceeCHHHHHHHHHHHHHhCCCeEEECCCCeEEEecCCHHHHHHHHHHHHhcCCCccccCCCccccCCccc
Confidence 699999999 999999999999999999999999999999999999999999999999999983 4568899999
Q ss_pred ceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEEEec-----------
Q psy3753 125 NITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNK----------- 193 (928)
Q Consensus 125 ni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~----------- 193 (928)
||++||+++.|+.+..|+.+++.+|.+.+........||+||||+||||||+|+.++++||||++....
T Consensus 141 ni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP~K~kI~vsGCpn~C~~~~~~Dig~vg~~r~~p~id~e~~~~ 220 (386)
T 3or1_B 141 NIVHTQGWVYCHTPATDASGPVKAVMDELFEEFTSMRLPAIVRVSLACCINMCGAVHCSDIGLVGIHRKPPMIDHENLAE 220 (386)
T ss_dssp CCBCCCGGGTCSSCSSCSHHHHHHHHHHTHHHHSCCCSSSCCCEEEESSTTCCSSGGGSSEEEEEECCSCCCCCTTTHHH
T ss_pred ceEecCCccccchhHHHHHHHHHHHHHHHHHhhhccccceeeEEeeccCcccccccccccccccccccccceechhhhcc
Confidence 999999999999999999999999988775544446899999999999999999999999999998420
Q ss_pred -----------------------CC--------------------------------eeeEEEEEcccCC---CCCcccc
Q psy3753 194 -----------------------LG--------------------------------KIGFCVIVGGGMG---RTPIIGQ 215 (928)
Q Consensus 194 -----------------------~~--------------------------------~~gf~v~vGG~~g---~~p~~g~ 215 (928)
+| +.|+.|++||+.| ..|++|+
T Consensus 221 ~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~~~~~g~~i~vGGk~~~~~~~~~~~~ 300 (386)
T 3or1_B 221 LCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSDGTGDGIAIMVGGKISNRIKVPSFSK 300 (386)
T ss_dssp HCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCCCSSSCCBCCE
T ss_pred cccchhhhhhCchhhccccccccCCccccccccCCCcCCccccHHHhCcHhhCcCCCCceEEEEEccccCcccccccccc
Confidence 22 2699999999988 4699999
Q ss_pred cccccCCh-----HHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHH
Q psy3753 216 IICKFLPW-----KHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVN 268 (928)
Q Consensus 216 ~l~~~v~~-----~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~ 268 (928)
.+..|++. +|+.+++++++++|+++|+. +|||+++++|+|+++|++.++
T Consensus 301 ~l~~~~~~e~~~~~e~~~~i~~i~~~~~e~g~~----~ER~g~~i~R~G~~~f~~~~~ 354 (386)
T 3or1_B 301 VVVAFVPNEPPRWPTMAKIVKKIVEVYAEDARK----YERIGDWIHRIGWETFYEKTG 354 (386)
T ss_dssp EEEEEEECCTTTCHHHHHHHHHHHHHHHHHCCT----TCCHHHHHHHHCHHHHHHHHC
T ss_pred eeecccccCCccHHHHHHHHHHHHHHHHHHCCc----CCCHHHHHHHcCHHHHHHHHC
Confidence 99888876 69999999999999999975 899999999999999999874
No 15
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=100.00 E-value=5.1e-37 Score=346.18 Aligned_cols=213 Identities=22% Similarity=0.259 Sum_probs=194.1
Q ss_pred eeEEEEEcCCCc-cCHHHHHHHHHHHHHhCCCeEecc-ccCceEEcccCCCChHHHHHHHH--HcCCccccccCCcccce
Q psy3753 51 AYMLRIAIPYGM-LSSKQMRMLSYIAKKYDRNYGHFT-TRQNIQFNWIKLKESPDILENLA--SVEMHAIQTSGNCIRNI 126 (928)
Q Consensus 51 ~~~vRir~p~G~-lt~~ql~~la~iA~~yg~g~i~lT-tRq~iql~gi~~e~~~~~~~~L~--~~GL~~~~~~gd~vRni 126 (928)
.|||||++|+|+ +|++||++||+||++||+|.++|| +||||||+|++.+++++++++|. ++|+. .+++|+.+||+
T Consensus 95 ~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv~~e~l~~i~~eL~~~~~Gl~-~ggsG~~vRni 173 (418)
T 3mm5_A 95 FHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDLGNLEIPFD-IGGSGSDLRTP 173 (418)
T ss_dssp CEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEECHHHHHHHHHHHHHSSSCCC-BCCCSSSBCCC
T ss_pred EEEEEEeCCCCcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCCCHHHHHHHHHHHhcccccCC-cCCccccccce
Confidence 699999999997 999999999999999999999999 99999999999999999999999 99995 56889999999
Q ss_pred EeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccc-cccceEEEEEEec------------
Q psy3753 127 TSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAI-FVHDIGLRAIKNK------------ 193 (928)
Q Consensus 127 ~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~-~~~Dig~ia~~~~------------ 193 (928)
++||+++.|+.+.+|+.+++.+|.+.+........||+||||+||||||+|+.+ +++||||+++...
T Consensus 174 ~aC~G~~~C~~a~~Dt~~la~~L~~~l~~~~~~~~LP~KfKI~iSGCpN~C~~~~~~~DIGiiG~~r~~~~iD~e~~~~~ 253 (418)
T 3mm5_A 174 SACMGPALCEFACYDTLELCYDLTMTYQDELHRPMWPYKFKIKCAGCPNDCVASKARSDFAIIGTWKDDIKVDQEAVKEY 253 (418)
T ss_dssp EECCGGGTCTTCSSCHHHHHHHHHHHTHHHHHSCCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHH
T ss_pred EecCCcccccchhhhHHHHHHHHHHHHHHhhhhccCCcceEEeeeccccchhhHHHhccccccccccccccccHHHHhhh
Confidence 999999999999999999999999887653333579999999999999999998 7999999998421
Q ss_pred -------------------------------------------------CCeeeEEEEEcccC--CCCCcccccccccCC
Q psy3753 194 -------------------------------------------------LGKIGFCVIVGGGM--GRTPIIGQIICKFLP 222 (928)
Q Consensus 194 -------------------------------------------------~~~~gf~v~vGG~~--g~~p~~g~~l~~~v~ 222 (928)
..+.||.|++||+. +..|++|+.+..|++
T Consensus 254 ~~gc~i~~~cv~~CPt~Ai~~~~~~~~id~~~Ci~Cg~Ci~~CP~~~~~~~~~g~~I~vGGk~~~~~g~~lg~~~~pf~~ 333 (418)
T 3mm5_A 254 ASWMDIENEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMPKALKPGDERGATILIGGKAPFVEGAVIGWVAVPFVE 333 (418)
T ss_dssp HTTSCHHHHTGGGCTTCCEEECSSCEEECTTTCCCCCHHHHHCTTTEECCSSEEEEEEECCBCSTTTCCBCCEEEEEEEC
T ss_pred ccccccCccccccCCccccccCCceeEEChhhcCccChhHHhCcHhhccCCCCCeEEEEeCCCcccccccccceeecccc
Confidence 13469999999998 578999999888887
Q ss_pred ----hHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHH
Q psy3753 223 ----WKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVN 268 (928)
Q Consensus 223 ----~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~ 268 (928)
.+++++++++++++|.++|.+ +|||+++++|+|+++|++.+.
T Consensus 334 ~~~p~eei~~~ie~i~~~~~e~g~~----~ER~g~~i~RiG~~~F~e~v~ 379 (418)
T 3mm5_A 334 VEKPYDEIKEILEAIWDWWDEEGKF----RERIGELIWRKGMREFLKVIG 379 (418)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHCCT----TCCHHHHHHHHCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC----CCcHHHHHHHcCHHHHHHHHC
Confidence 699999999999999999975 799999999999999998764
No 16
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=100.00 E-value=2.7e-36 Score=339.54 Aligned_cols=212 Identities=15% Similarity=0.169 Sum_probs=193.4
Q ss_pred eeEEEEEcCCCc-cCHHHHHHHHHHHHHhCCCeEeccc-cCceEEcccCCCChHHHHHHHH-HcCCccccccCCcccceE
Q psy3753 51 AYMLRIAIPYGM-LSSKQMRMLSYIAKKYDRNYGHFTT-RQNIQFNWIKLKESPDILENLA-SVEMHAIQTSGNCIRNIT 127 (928)
Q Consensus 51 ~~~vRir~p~G~-lt~~ql~~la~iA~~yg~g~i~lTt-Rq~iql~gi~~e~~~~~~~~L~-~~GL~~~~~~gd~vRni~ 127 (928)
.|||||++|+|+ +|++||++||+||++||+|.++||+ ||||||+|++.+++++++++|. ++|+. .+++|+.+|||+
T Consensus 97 ~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi~~e~le~l~~eL~~~~Gl~-~ggsG~~vRniv 175 (437)
T 3or1_A 97 FHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFEMTHNLNTD-LGGSGSNLRTPE 175 (437)
T ss_dssp CCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECCCGGGHHHHHHHHHHHSCCC-BCCCSSSBCCCE
T ss_pred EEEEEEeCCCCCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecCCHHHHHHHHHHHHhhcCcC-ccccCCcceeee
Confidence 699999999997 9999999999999999999999998 5999999999999999999999 89997 567899999999
Q ss_pred eCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccc-cccceEEEEEEec-------------
Q psy3753 128 SDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAI-FVHDIGLRAIKNK------------- 193 (928)
Q Consensus 128 ~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~-~~~Dig~ia~~~~------------- 193 (928)
+||+++.|+.+++||.+++.+|.+.+........||+||||+||||||+|+.+ .++||||+|+...
T Consensus 176 aC~G~~~C~~a~~DT~~la~~L~~~l~~~~~~~~LP~KfKI~iSGCpN~C~~~v~~aDIGiiG~~r~~i~id~~~v~~~~ 255 (437)
T 3or1_A 176 SCLGISRCEFACYDTQLMCYQLTQDYQDELHRPAFPYKFKFKFDGCPNGCVASMARSDFAVIGTWKDDIKIDQEAVKAYV 255 (437)
T ss_dssp ECCGGGSCSSCCSCHHHHHHHHHHHTHHHHHSCCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHHH
T ss_pred ccccccccCccccccchhhhhhHhhhhhccccccCCceeeEeeccccccccchhhhccccccccccCCCccCHHHHHHHh
Confidence 99999999999999999999999988654334689999999999999999998 7999999998531
Q ss_pred ----------------------------------------------------------------CCeeeEEEEEcccCC-
Q psy3753 194 ----------------------------------------------------------------LGKIGFCVIVGGGMG- 208 (928)
Q Consensus 194 ----------------------------------------------------------------~~~~gf~v~vGG~~g- 208 (928)
..+.||.|++||+.+
T Consensus 256 ~~e~~~~~~a~~g~~~~~~di~~~vv~~CPt~ai~~~~~~l~Id~~~C~~Cg~Ci~~CP~al~~~~~~G~~ilvGgk~~i 335 (437)
T 3or1_A 256 GGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMTYESGTLSIDNKNCTRCMHCINTMPRALKIGDERGASILVGAKAPV 335 (437)
T ss_dssp HTSSCGGGGTTTTSCCCSCCHHHHTTTTCTTCCEEEETTEEEECGGGCCCCSHHHHHCTTTEECCSSEEEEEEECCBCST
T ss_pred hcCCCCcccccccCcCcccccchhhhccCcHHheeecCCEEEEccccCCchhhhHhhCcHhhccCCCCceEEEEeCCCCc
Confidence 125799999999987
Q ss_pred -CCCcccccccccCC----hHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHH
Q psy3753 209 -RTPIIGQIICKFLP----WKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQV 267 (928)
Q Consensus 209 -~~p~~g~~l~~~v~----~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~ 267 (928)
..|++|+.+..|++ .+++.+++++++++|.++|.. +||++++++|+|+++|++.+
T Consensus 336 ~~g~~l~~~~~pf~~~~~p~~ei~~~i~~i~~~~~e~gk~----~ER~ge~i~R~G~~~f~e~~ 395 (437)
T 3or1_A 336 LDGAQMGSLLIPFIAAEEPFDEVKEVIENIWEWWMEEGKN----RERLGETMKRVGFQKLLEVT 395 (437)
T ss_dssp TTCCBCCEEEEEEECCCTTCHHHHHHHHHHHHHHHHHSCT----TCCHHHHHHHHCHHHHHHHT
T ss_pred ccCCccceeeeecccCCCCHHHHHHHHHHHHHHHHHcCCC----CccHHHHHHHcCHHHHHHHH
Confidence 67999998888887 799999999999999999964 79999999999999998766
No 17
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=100.00 E-value=1.8e-36 Score=334.79 Aligned_cols=203 Identities=23% Similarity=0.355 Sum_probs=146.7
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc----CCCceEEEEcCCCChHHHHHHHHHHHHHcCC
Q psy3753 689 KIPLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN----NFDINIFTLNTGRLHSETLNMLNKIYLTYKY 764 (928)
Q Consensus 689 ~~~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~----~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~ 764 (928)
...|+.++..++++|++++++|++++|+|||||||+|||||+.++ .++++++|+|||.+||||++|+++++++||+
T Consensus 25 ~~~L~~le~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi 104 (325)
T 1zun_A 25 LTHLKQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVEEMGL 104 (325)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 346888999999999999999999999999999999999999997 5689999999999999999999999999999
Q ss_pred eEEEEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceee-----
Q psy3753 765 KIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEK----- 837 (928)
Q Consensus 765 ~i~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~----- 837 (928)
+++++.+.... ..|.+.+.. ..++||.++|+.||+++++ +.++|++|.|++||..|+.++.++.
T Consensus 105 ~l~v~~~~~~~------~~G~~~~~~---~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~~Ra~~~~~~~r~~~~ 175 (325)
T 1zun_A 105 DLITHINPDGV------AQGINPFTH---GSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKH 175 (325)
T ss_dssp CEEEECC-----------------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSGGGGGCCSEEEECTTC
T ss_pred CEEEEeCchHH------hcCCCcccc---ChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhhhhhcccceecccccc
Confidence 99999875421 234333322 2468999999999999997 6899999999999999988776641
Q ss_pred --cCC---------------CCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhh-------------------hcC-----
Q psy3753 838 --DII---------------HNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLY-------------------DNG----- 876 (928)
Q Consensus 838 --d~~---------------~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLY-------------------d~G----- 876 (928)
+.. .++.++++||++||++|||.|++.++||||||| ++|
T Consensus 176 ~~d~~~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~LY~~~~r~~~~r~g~~~~~~~~~g~~~~~ 255 (325)
T 1zun_A 176 RWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAAERDVIEKNGTLIMIDDERILEHLT 255 (325)
T ss_dssp CBCGGGCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCSCCSCC------------------------
T ss_pred ccCccccCcchhhhccccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcchhhhcccccccccCCceeccchhhcccccC
Confidence 110 013788999999999999999999999999999 689
Q ss_pred -------------CCccCcccCCCCCCCC---------------CCcccccc
Q psy3753 877 -------------YLSIGCEPCTRPTEKG---------------KDIRSGRW 900 (928)
Q Consensus 877 -------------y~riGC~~Ct~~~~~~---------------~~~r~gRW 900 (928)
|+||||++||.++..+ ..||.|||
T Consensus 256 ~~~~~~~~~~~~ry~siGc~~cT~~v~~~~~~~~~~~~~~~~~~~~er~~R~ 307 (325)
T 1zun_A 256 DEEKSRIVKKKVRFRTLGCYPLTGAVESEATSLTDIIQEMLLTRTSERQGRV 307 (325)
T ss_dssp ----------------------------------------------------
T ss_pred CCccccccccccccCCcCCcccCCccCCCCccHHHHHHHHHhcCCCcccccc
Confidence 9999999999999866 35999999
No 18
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=100.00 E-value=3.5e-36 Score=338.00 Aligned_cols=220 Identities=20% Similarity=0.302 Sum_probs=198.0
Q ss_pred ceeeeec----C-eeEEEEEcCCCccCHHHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHc-CCccc
Q psy3753 43 NGLYLQR----Y-AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASV-EMHAI 116 (928)
Q Consensus 43 ~G~~~q~----~-~~~vRir~p~G~lt~~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~-GL~~~ 116 (928)
-|++.|. + .|||||++|+ .+|++||++||+||++||+|.++||+||||||+||+.+++++++++|.++ ||.+
T Consensus 38 ~Gv~~~~~e~gd~~~~vRv~~p~-~lt~~qlr~ladiA~kyg~G~lrlTtrqni~l~gv~~~~l~~l~~~L~~~~Gl~~- 115 (366)
T 3mm5_B 38 PGVIKRVAESGDVIYVVRFGTPR-LLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGFPC- 115 (366)
T ss_dssp TTEEEEEETTSCEEEEEEECCCS-EEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHHHHHHCCCB-
T ss_pred CCEEEeeccCCCceEEEEECCcc-ccCHHHHHHHHHHHHHhCCCeEEEcCCCeEEEecCCHHHHHHHHHHHHHhcCCCc-
Confidence 5777764 3 6899999998 99999999999999999999999999999999999999999999999999 9964
Q ss_pred ccc-CC-----cccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecCCCcccccccceEEEEE
Q psy3753 117 QTS-GN-----CIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAI 190 (928)
Q Consensus 117 ~~~-gd-----~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~~~c~~~~~~Dig~ia~ 190 (928)
+++ |+ .+|||++||+++.|+.++.|+.+++.+|.+.+........||+||||+||||+++|+.++.+||||++.
T Consensus 116 g~~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP~k~kI~vsgC~~~C~~~~~~Dig~~g~ 195 (366)
T 3mm5_B 116 GGTWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLPAMCRISLACCANMCGAVHASDIAIVGI 195 (366)
T ss_dssp CCCEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHHHHHSCCBSSCCCEEEESSTTCSSSGGGSSEEEEEE
T ss_pred ccccCCcccccceeeeecCCCccccchHHHHHHHHHHHHHHHHHHhhccccccccceeccccCccccccccccccccccc
Confidence 566 88 999999999999999999999999999988775443346799999999999999999999999999998
Q ss_pred Ee------------------------------------------------------------cCCeeeEEEEEcccCC--
Q psy3753 191 KN------------------------------------------------------------KLGKIGFCVIVGGGMG-- 208 (928)
Q Consensus 191 ~~------------------------------------------------------------~~~~~gf~v~vGG~~g-- 208 (928)
.. .....|+.+++||+.|
T Consensus 196 ~r~~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~~~~g~~i~vGgk~~~~ 275 (366)
T 3mm5_B 196 HRTPPIPNDEAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIMVGGKLSEA 275 (366)
T ss_dssp CCSCCCCCHHHHHHHCCHHHHHHTCTTCCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCSCT
T ss_pred cccceEEcchhccccccccchhccCCccceEecCCCCeEEEehhhCCCcchHHHhCCHhhcccccCCceEEEEcCccccc
Confidence 31 0124699999999988
Q ss_pred -CCCcccccccccCCh-----HHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCHHHHHHHHH
Q psy3753 209 -RTPIIGQIICKFLPW-----KHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVN 268 (928)
Q Consensus 209 -~~p~~g~~l~~~v~~-----~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~e~f~~~~~ 268 (928)
..|++|+.+..+++. +++++++++++++|+++|.. +|||+++++|+|+++|++.++
T Consensus 276 ~~~~~lg~~~~~~~~~~~p~~~ev~~~v~~i~~~y~~~g~~----~eR~~~~i~r~G~~~f~~~~~ 337 (366)
T 3mm5_B 276 RRMPELSKVVVPWVPNEPPRWPTLVKYVKQILEAWAANANK----HERLIEWVDRIGWERFFELTG 337 (366)
T ss_dssp TSCCBCCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHCCT----TCCHHHHHHHHCHHHHHHHHT
T ss_pred cccCcccchhhccccCCCcchHHHHHHHHHHHHHHHHhCCc----cccHHHHHHHhCHHHHHHHHC
Confidence 579999999888875 89999999999999999965 899999999999999999885
No 19
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=324.68 Aligned_cols=189 Identities=17% Similarity=0.244 Sum_probs=153.0
Q ss_pred hhHHHHHH-HHHHHHHhcC----CeEEEEcChHHHHHHHHHHHhc----------------------CCCceEEEEcCCC
Q psy3753 694 SFVKTVLD-ALNNIVTDYK----PAVFASSLAAEDMVLTDLILRN----------------------NFDINIFTLNTGR 746 (928)
Q Consensus 694 ~~~~~a~~-~I~~~~~~~~----~~~vs~SGGKDS~vll~L~~~~----------------------~~~i~vvf~DTg~ 746 (928)
..+..+++ +|++++++|+ +++|+|||||||+|||||+.++ .++++++|+|||.
T Consensus 32 e~i~~~~~~il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~ 111 (306)
T 2wsi_A 32 EAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE 111 (306)
T ss_dssp HHHHHHHHHHHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC
Confidence 34444454 6667778886 6999999999999999999885 4679999999999
Q ss_pred ChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeeccccc
Q psy3753 747 LHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQS 826 (928)
Q Consensus 747 efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES 826 (928)
+||||++|++++.++||++++++.+.... + ..++. .+...+|+.|+ .+++++|+|++||
T Consensus 112 ~fpet~~fv~~~~~~ygl~l~v~~~~~~~--------~-~~l~~------~~~~~~k~~p~------~~aii~G~Rrdds 170 (306)
T 2wsi_A 112 TFPTLENFVLETSERYCLSLYESQRQSGA--------S-VNMAD------AFRDFIKIYPE------TEAIVIGIRHTDP 170 (306)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEECCC--------------CCHHH------HHHHHHHHCTT------CCEEECCCCCCSS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCccc--------c-ccHHH------HHHHHHhhCCC------CcEEEEEEecccc
Confidence 99999999999999999999988775321 0 11211 12233455553 3578999999999
Q ss_pred ccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcCCCccCcccCCCCCCC---CCCccccccccC
Q psy3753 827 ITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEK---GKDIRSGRWWWE 903 (928)
Q Consensus 827 ~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~Ct~~~~~---~~~~r~gRW~~~ 903 (928)
..|+.......+..+++.++++||++||++|||.||+.++|||||||++||+||||++||.|++. +++.+.+||||+
T Consensus 171 ~~r~l~~~~~~d~~~p~~~ri~PL~dWt~~DVw~Yi~~~~lpy~pLYd~GY~SiGc~~cT~pnp~l~~~~~~~~~~~~we 250 (306)
T 2wsi_A 171 FGEALKPIQRTDSNWPDFMRLQPLLHWDLTNIWSFLLYSNEPICGLYGKGFTSIGGINNSLPNPHLRKDSNNPALHFEWE 250 (306)
T ss_dssp SCCCCCSEEECCTTSCSCEEECTTTTCCHHHHHHHHHHHCCCBCHHHHTTCSSCCCTTTBCSCGGGBGGGCCCCCSCHHH
T ss_pred cccccCceeccCCCCCCcEEEeChHHCCHHHHHHHHHHcCCCCChhHhcCCCcCCcccCCCcCHHHhccccccccccccc
Confidence 99877665555655677899999999999999999999999999999999999999999999995 556788999998
No 20
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=100.00 E-value=1.3e-33 Score=334.32 Aligned_cols=220 Identities=16% Similarity=0.221 Sum_probs=194.8
Q ss_pred ccccccccccee--eCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhC-CCcEEeccCCCEEEccCCcCCHHHHHHH
Q psy3753 319 ENWVHQNTKKHK--INGYIIVILSLKRINMAPGDITSEQMNFIANLADHYS-FSELRVTHTQNIVLSDVTKDNLFNLWTE 395 (928)
Q Consensus 319 ~~w~~~gv~~qk--~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g-~g~irlT~~q~i~l~gi~~~~~~~~~~~ 395 (928)
.+|. |+|.|+ +++.||+||++|+ |.+|++||+.||+||++|| +|.+++|+||||||+||+.+++++++++
T Consensus 119 ~k~~--G~y~~~~~~~~~~mvRvr~Pg-----G~lt~~qlr~ladia~~yg~~G~i~~TtRq~iql~gi~~~~l~~i~~~ 191 (591)
T 3b0g_A 119 LKWL--GLFHRRKNQYGRFMMRLKLPN-----GVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKG 191 (591)
T ss_dssp GGGG--TEEECTTTSTTEEEEECBCGG-----GEEEHHHHHHHHHHHHHTGGGCEEEECTTSCEEEEEEEGGGHHHHHHH
T ss_pred hhhc--eeEEeccCCCCeEEEEecCCC-----ceECHHHHHHHHHHHHHhCCCCeEEEeCCccEEEecCCHHHHHHHHHH
Confidence 4444 566443 3489999988865 9999999999999999999 7999999999999999999999999999
Q ss_pred HHHCCCCCCCc-c-cccceeccCCcccccccccchHHHHHHHHHHhc------ccCcCCCCCeEEEEecCCCCCcccccc
Q psy3753 396 IKQYGLSESNI-N-LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS------KDDQRNIGKISLNISGCINSCGHHHIG 467 (928)
Q Consensus 396 L~~~Gl~~~~~-~-~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~------~~~~~~~~k~ki~iSGCpn~C~~~~~a 467 (928)
|.+.|+.+.++ + .+||+++|||+..|+.+++||.+++.+|.++|. +.++++|+||||+|||||++|+.+.++
T Consensus 192 L~~~gl~~~~~~gd~~Rnv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~~~ 271 (591)
T 3b0g_A 192 LAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHIN 271 (591)
T ss_dssp HHHTTCBCTTCSSSSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHHTTTTCCGGGSCCSSCBCEEECCCTTCTTCGGGS
T ss_pred HHHcCCCCCcCccCCCCCeEeCCCcccCcchhhhHHHHHHHHHHHHhhcccCCccccccCcceEEEEccCcccccccccc
Confidence 99999998544 3 599999999999999999999999999999885 235678889999999999999999999
Q ss_pred cEEEEeEeeCCCcEEEEEEcCCCCC-CCcccccccCCCCcccHHHHHHHHHHHHHHhccc----ccccccccceeehhhh
Q psy3753 468 NIGILGLNKNGNEYFQILIGGSQGN-KLNFGKIIGPSFSADQVPDIINRILKVYLRRCYL----MCKIIKNDTIVNDNWK 542 (928)
Q Consensus 468 Dig~ig~~~~~~~g~~i~vGG~~~~-~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~----~eR~~k~~~i~r~g~~ 542 (928)
||||+++++++..||+|++||+.|. .++++..+..+++++++++++++++++|++++.+ .+|+ +..|++.|+.
T Consensus 272 Dig~i~~~~~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~ai~~~~~~~G~r~~R~kaR~--~~li~~~G~e 349 (591)
T 3b0g_A 272 DLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRM--MWLIDELGVE 349 (591)
T ss_dssp SEEEEEEEETTEEEEEEEECCEECSSCEECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGCSH--HHHHHHHCHH
T ss_pred eEEEEEEEcCCCceEEEEEccccCCCCcccceeeccccCHHHHHHHHHHHHHHHHHhcccccccchhH--HHHHHhccHH
Confidence 9999999887778999999998875 4678989988999999999999999999999874 4677 8888888887
Q ss_pred hhhhc
Q psy3753 543 MLYEN 547 (928)
Q Consensus 543 ~~~e~ 547 (928)
.|.+.
T Consensus 350 ~f~~~ 354 (591)
T 3b0g_A 350 GFRAE 354 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 21
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=100.00 E-value=7e-33 Score=328.06 Aligned_cols=207 Identities=13% Similarity=0.225 Sum_probs=188.9
Q ss_pred CCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhCCCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCC-CCcc-cc
Q psy3753 332 NGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSE-SNIN-LL 409 (928)
Q Consensus 332 ~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~-~~~~-~~ 409 (928)
+++||+||++|+ |.+|++||++||++|++||+|.+++|+||||||+|++.+++++++++|.+.|+.+ ++++ .+
T Consensus 102 ~~~~mvRvr~p~-----G~lt~~qlr~la~ia~~yg~g~i~~TtRqniql~gi~~~~l~~i~~~L~~~gl~~~~~~G~~~ 176 (566)
T 1zj8_A 102 AKYFMMRVRCDG-----GALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCP 176 (566)
T ss_dssp EEEEEEEEBCGG-----GEECHHHHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHHHTTTCBCTTSSSSSE
T ss_pred CceEEEEecCCC-----CcCCHHHHHHHHHHHHHHCCCeEEEECCccEEEecCCHHHHHHHHHHHHHcCCCCCCCcCCCC
Confidence 358999998865 9999999999999999999999999999999999999999999999999999987 4444 59
Q ss_pred cceeccCCcccccccccchHHHHHHHHHHhc--ccCcCCCCCeEEEEecCCCCCcccccccEEEEeEeeC-CCcEEEEEE
Q psy3753 410 TDIICCPGGDFCSLANTKSLPIAKNIMKYFS--KDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKN-GNEYFQILI 486 (928)
Q Consensus 410 r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~--~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig~~~~-~~~g~~i~v 486 (928)
||+++|||+..|+.+++|+.+++.+|.++|. +.++++|+||||+||||+|.| +.++||||+|++++ ...||+|++
T Consensus 177 Rnv~~~p~~~~~~~~~~D~~~~~~~l~~~~~~~~~~~~LP~KfKiavsgc~~~~--~~~~Dig~i~~~~~~~~~G~~v~v 254 (566)
T 1zj8_A 177 RVVLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGLQDVA--HEINDVAFIGVNHPEHGPGLDLWV 254 (566)
T ss_dssp EEEEECTTTTTCTTCSCCTHHHHHHHHHHHTTSGGGSSCSSCEEEEEESSSCSC--GGGSSEEEEEEEETTTEEEEEEEE
T ss_pred CCeecCcccccCcccccCcHHHHHHHHHHHcCCcccccCCcceEEEEeccCCcc--cccCcEEEEEEEecCCCceEEEEE
Confidence 9999999999999999999999999999987 556778889999999999955 57999999998764 458999999
Q ss_pred cCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhc----ccccccccccceeehhhhhhhhc
Q psy3753 487 GGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRC----YLMCKIIKNDTIVNDNWKMLYEN 547 (928)
Q Consensus 487 GG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~----~~~eR~~k~~~i~r~g~~~~~e~ 547 (928)
||+.|..|++|+.++++++++++++++++++++|++++ .+.+|+ +..|++.|+..|.+.
T Consensus 255 GG~~g~~p~~a~~l~~~v~~e~v~~~~~ai~~~~~~~G~R~~r~~aRl--~~li~~~G~e~f~~~ 317 (566)
T 1zj8_A 255 GGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARL--KFLIKDWGIAKFREV 317 (566)
T ss_dssp CCBCSSSCBCCEEEEEEECGGGHHHHHHHHHHHHHHHSCCSSGGGCSH--HHHHHHHCHHHHHHH
T ss_pred cccCCCCCcchhhhccCCCHHHHHHHHHHHHHHHHHhCcccccchHHH--HHHHHHHCHHHHHHH
Confidence 99999999999999999999999999999999999998 667898 899999999887764
No 22
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=100.00 E-value=1.5e-33 Score=334.05 Aligned_cols=216 Identities=18% Similarity=0.209 Sum_probs=193.1
Q ss_pred ccccee--eCCEEEEEEEeccCCCCCCCcCHHHHHHHHHHHHHhC-CCcEEeccCCCEEEccCCcCCHHHHHHHHHHCCC
Q psy3753 325 NTKKHK--INGYIIVILSLKRINMAPGDITSEQMNFIANLADHYS-FSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGL 401 (928)
Q Consensus 325 gv~~qk--~~g~~~v~v~~~~~~~p~G~l~~~qlr~La~ia~~~g-~g~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl 401 (928)
|+|.|+ ++++||+||++|+ |.+|++||+.||+||++|| +|.+++|+||||||+||+.+++++++++|.+.|+
T Consensus 140 G~y~r~~~~~~~~mvRvr~Pg-----G~lt~~qlr~ladiA~kyg~~G~i~lTtRq~iql~gi~~e~l~~i~~~L~~~Gl 214 (608)
T 2akj_A 140 GLFHRRKHHYGRFMMRLKLPN-----GVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGL 214 (608)
T ss_dssp TEEECHHHHTTCEEEECCCGG-----GEEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHHHTTTC
T ss_pred ceeeeccCCCceEEEEecCCC-----cccCHHHHHHHHHHHHHhCCCCeEEEecCcceEEcCCCHHHHHHHHHHHHHcCC
Confidence 666543 3489999988865 9999999999999999999 7999999999999999999999999999999999
Q ss_pred CCCCc-c-cccceeccCCcccccccccchHHHHHHHHHHhc------ccCcCCCCCeEEEEecCCCCCcccccccEEEEe
Q psy3753 402 SESNI-N-LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS------KDDQRNIGKISLNISGCINSCGHHHIGNIGILG 473 (928)
Q Consensus 402 ~~~~~-~-~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~------~~~~~~~~k~ki~iSGCpn~C~~~~~aDig~ig 473 (928)
.+.++ + .+||+++|||+..|+.+++|+.+++.+|.++|. +..+++|+||||+|||||++|+.+.++||||++
T Consensus 215 ~~~~~~gd~~Rnv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~~~Dig~i~ 294 (608)
T 2akj_A 215 TSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMP 294 (608)
T ss_dssp CCTTCSSSSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHTTTTTCCGGGSCCSSCBCEEECCCTTCTTCGGGSSEEEEE
T ss_pred CCCCCcCCCCCCeEeCCCcccCcchhhhHHHHHHHHHHHHhhcccCCccccccCcceEEEeccCcccccccccceEEEEE
Confidence 98544 3 599999999999999999999999999999986 235678889999999999999999999999999
Q ss_pred EeeCCCcEEEEEEcCCCCC-CCcccccccCCCCcccHHHHHHHHHHHHHHhccc----ccccccccceeehhhhhhhhc
Q psy3753 474 LNKNGNEYFQILIGGSQGN-KLNFGKIIGPSFSADQVPDIINRILKVYLRRCYL----MCKIIKNDTIVNDNWKMLYEN 547 (928)
Q Consensus 474 ~~~~~~~g~~i~vGG~~~~-~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~~----~eR~~k~~~i~r~g~~~~~e~ 547 (928)
+++++..||+|++||+.+. .+.++..+..+++++++++++++++++|++++.+ .+|+ +..|++.|+..|.+.
T Consensus 295 ~~~~g~~Gf~v~vGGg~g~~~~~~~~~l~~~v~~eev~~~~~ai~~~~~~~G~r~~R~~aRl--~~li~~~G~e~f~~~ 371 (608)
T 2akj_A 295 ATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRM--MWLIDELGMEAFRGE 371 (608)
T ss_dssp EESSSSEEEEEEECCEECSSCEECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGCSH--HHHHHHHCHHHHHHH
T ss_pred EEeCCccEEEEEECcccCCCCcccceecccccCHHHHHHHHHHHHHHHHHhCCcccccchhH--HHHHHhhchHHHHHH
Confidence 9877778999999998875 4678888888999999999999999999999874 4677 888888888777654
No 23
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=100.00 E-value=1.9e-32 Score=286.81 Aligned_cols=182 Identities=27% Similarity=0.437 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHhcC-CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhh
Q psy3753 698 TVLDALNNIVTDYK-PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEV 776 (928)
Q Consensus 698 ~a~~~I~~~~~~~~-~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~ 776 (928)
.+.++|++++++|+ +++|+|||||||+|||||+.+...++.++|+|||.++|+|++|+++++++||++++++.+... .
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~~-~ 109 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES-A 109 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECSSC-H
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCCC-H
Confidence 67899999999996 899999999999999999999999999999999999999999999999999999999988764 3
Q ss_pred hHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCC--cEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCC
Q psy3753 777 NNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGN--KSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWL 854 (928)
Q Consensus 777 ~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~--~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt 854 (928)
..+..++| ..+........+||..+|..|+.+++++. +++++|+|++||..|..++.++.. ++..+++||++||
T Consensus 110 ~~~~~~~g-~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~~r~~~~~~~~~---~~~~~i~PLl~~t 185 (215)
T 1sur_A 110 AWQEARYG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQ---RGVFKVLPIIDWD 185 (215)
T ss_dssp HHHHHHHC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSSTTTTCCSEEEE---TTEEEECTTTTCC
T ss_pred HHHHHhcC-CCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhhhhcCCCccccC---CCEEEEechHhCC
Confidence 34455667 33333223357899999999999999754 479999999999999988776532 4678899999999
Q ss_pred HHHHHHHHHHCCCCCChhhhcCCCccCccc
Q psy3753 855 EKDIWNYINTYNVPYNTLYDNGYLSIGCEP 884 (928)
Q Consensus 855 ~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~ 884 (928)
.+|||.|++.++||+||||++||+|+||+|
T Consensus 186 ~~dI~~y~~~~~lp~~~lY~~Gy~siGC~p 215 (215)
T 1sur_A 186 NRTIYQYLQKHGLKYHPLWDEGYLSVGDTH 215 (215)
T ss_dssp HHHHHHHHHHHTCCCCGGGGGTCSCCCBCC
T ss_pred HHHHHHHHHHhCCCCChHHhCCCCCCCCCC
Confidence 999999999999999999999999999986
No 24
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=99.97 E-value=4.2e-32 Score=317.75 Aligned_cols=237 Identities=12% Similarity=0.060 Sum_probs=198.3
Q ss_pred HHHHHHHHHHhcCCCC---HHHHhhccccceeeeecC-eeEEEEEcCCCcc---CHH-HHHHHHHHHHHhCCCeEecccc
Q psy3753 17 IQYRDQVRRRLSNELS---EEEFIVLRLQNGLYLQRY-AYMLRIAIPYGML---SSK-QMRMLSYIAKKYDRNYGHFTTR 88 (928)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~q~~-~~~vRir~p~G~l---t~~-ql~~la~iA~~yg~g~i~lTtR 88 (928)
++|++.+++++..++. +..+.......||++|++ .|.||+++|+|++ +++ ||+.||++|++|| |.+++|++
T Consensus 244 e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~~p~G~l~~~~~~~~l~~ladia~~yg-g~irlT~~ 322 (497)
T 1aop_A 244 ETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-GDFRITAN 322 (497)
T ss_dssp HHHHHHHHHHHTCCCBCCCCCCCCBCCCCCEEEECSTTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS-SEEEECTT
T ss_pred HHHHHHHHHHhCCCCCCCCCCCccccccceeEEEcCCceEEEEEECCCCcccCCCHHHHHHHHHHHHHHhC-CEEEEcCC
Confidence 4455555555443331 111112233479999976 7899999999999 888 9999999999998 99999999
Q ss_pred CceEEcccCCCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccC-CCceE
Q psy3753 89 QNIQFNWIKLKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYL-PRKFK 167 (928)
Q Consensus 89 q~iql~gi~~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~L-P~Kfk 167 (928)
|||+|.||+.++++++.+.|.+.||.+ +.++.+||+++||++..|+.++.|+.+++..|.+.+...-....| |.|||
T Consensus 323 qni~l~gv~~~~l~~l~~~L~~~Gl~~--~~~~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~~~~~~l~p~~~~ 400 (497)
T 1aop_A 323 QNLIIAGVPESEKAKIEKIAKESGLMN--AVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIV 400 (497)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHTTTTC--CCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTCTTCCCC
T ss_pred CCEEEecCCHHHHHHHHHHHHHCCCCC--CCCCceeeeecccCcccCcchhhhHHHHHHHHHHHHHHHHhhcCCCCcceE
Confidence 999999999999999999999999987 448889999999999999999999998777665554321111235 99999
Q ss_pred EEEEecCCCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcC
Q psy3753 168 ISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIY 247 (928)
Q Consensus 168 i~vsgc~~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~ 247 (928)
|+||||||+|++++.+||||+++..+ +|+|++||+.+ .|++|+.+...++.++++++++.++++|.+++..
T Consensus 401 i~vSGCpn~C~~~~~aDIGi~G~~~g----~y~i~lGG~~~-~~~~g~~~~~~v~~~ei~~~l~~l~~~y~~~~~~---- 471 (497)
T 1aop_A 401 MRVTGCPNGCGRAMLAEVGLVGKAPG----RYNLHLGGNRI-GTRIPRMYKENITEPEILASLDELIGRWAKEREA---- 471 (497)
T ss_dssp EEEESSTTCTTCGGGSSEEEEEEETT----EEEEEECCCTT-SCSCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCT----
T ss_pred EEEECCcchhhhhccCCEEEEEecCC----CEEEEECCCCC-CcchhhhhhcCCCHHHHHHHHHHHHHHHHHhCCC----
Confidence 99999999999999999999998752 59999999987 7889998888999999999999999999999865
Q ss_pred CCchhHHHHhhCHHHHHH
Q psy3753 248 KSRIKILLKSIGIENFQF 265 (928)
Q Consensus 248 ~~Rl~~~~~r~G~e~f~~ 265 (928)
+|||.++++|+|+++|.+
T Consensus 472 ~Erf~~~i~R~G~~~~~~ 489 (497)
T 1aop_A 472 GEGFGDFTVRAGIIRPVL 489 (497)
T ss_dssp TCCHHHHHHHTTSSCCCS
T ss_pred CCcHHHHHHHcCcHHhhh
Confidence 799999999999988763
No 25
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=99.97 E-value=4.4e-31 Score=311.57 Aligned_cols=207 Identities=12% Similarity=0.044 Sum_probs=185.6
Q ss_pred cceeeeecC-eeEEEEEcCCCccCH----HHHHHHHHHHHHhCCCeEeccccCceEEcccCCCChHHHHHHHHHcCCccc
Q psy3753 42 QNGLYLQRY-AYMLRIAIPYGMLSS----KQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAI 116 (928)
Q Consensus 42 ~~G~~~q~~-~~~vRir~p~G~lt~----~ql~~la~iA~~yg~g~i~lTtRq~iql~gi~~e~~~~~~~~L~~~GL~~~ 116 (928)
..||..|.+ .+.|++++|+|++++ +|++.||+||++|| |.++||++|||+|.||+.++++++.+.|.++||.
T Consensus 345 ~~g~~~~~dG~~~v~v~~~~Grl~~~~~~~~l~~La~iAe~~g-g~iRlT~~Qniil~gv~~e~l~~i~~~L~~~Gl~-- 421 (570)
T 4g38_A 345 RIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-GDFRITANQNLIIAGVPESEKAKIEKIAKESGLM-- 421 (570)
T ss_dssp CCEEEECSTTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS-SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTT--
T ss_pred ccCceecCCCcEEEEEEecCCeecCCccHHHHHHHHHHHHHhC-CeEEECCCCcEEEecCCHHHHHHHHHHHHHcCCC--
Confidence 479999877 789999999999998 69999999999998 9999999999999999999999999999999997
Q ss_pred cccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccC-CCceEEEEEecCCCcccccccceEEEEEEecCC
Q psy3753 117 QTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYL-PRKFKISISGSQEDRAAIFVHDIGLRAIKNKLG 195 (928)
Q Consensus 117 ~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~L-P~Kfki~vsgc~~~c~~~~~~Dig~ia~~~~~~ 195 (928)
++.++.+||+++||++..|..+..||.++|..|.+.+.....-..| |.||||+||||||+|++++.+||||++...+
T Consensus 422 ~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~~~~l~p~~iki~vSGCpn~C~~~~~aDIGlvG~~~g-- 499 (570)
T 4g38_A 422 NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPG-- 499 (570)
T ss_dssp CCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTCTTCCCCEEEESSTTCTTCGGGSSEEEEEEETT--
T ss_pred CCCCCcccCeEECCCCCcccchhHhHHHHHHHHHHHHHHHHhhcCCCCCceEEEEeCCCchhhhccccceEEEEeccc--
Confidence 5678899999999999999999999998777766655321111346 8999999999999999999999999997652
Q ss_pred eeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhcCCCCcCCCchhHHHHhhCH
Q psy3753 196 KIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGI 260 (928)
Q Consensus 196 ~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g~r~~r~~~Rl~~~~~r~G~ 260 (928)
+|+||+||+.| .|++|+.+...++.++++++++.+++.|.+++.. +|||.++++|+|+
T Consensus 500 --~y~l~lGG~~~-~~r~g~~~~~~v~~~ei~~~l~~ll~~y~~~r~~----~E~f~~~~~R~G~ 557 (570)
T 4g38_A 500 --RYNLHLGGNRI-GTRIPRMYKENITEPEILASLDELIGRWAKEREA----GEGFGDFTVRAGI 557 (570)
T ss_dssp --EEEEEECCCTT-SCSCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCT----TCCHHHHHHHTTS
T ss_pred --ceEEEECCcCC-CcccchhhhcCCCHHHHHHHHHHHHHHHHHhCCC----CCcHHHHHHhcCC
Confidence 79999999987 7899999989999999999999999999999875 7999999999884
No 26
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.25 E-value=2.7e-11 Score=141.79 Aligned_cols=180 Identities=9% Similarity=0.037 Sum_probs=125.4
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEe
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYY 770 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~ 770 (928)
.....++..++.|+..+.. +++++++|||+||+|+++|+.+.+.++.++|+|+|...++..++++++.+.+|++++++.
T Consensus 191 ~~~~~~~~~i~~ir~~~~~-~kvvvalSGGvDSsvla~ll~~~g~~v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~ 269 (503)
T 2ywb_A 191 TPEHVLEELLREVRERAGK-DRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVD 269 (503)
T ss_dssp CHHHHHHHHHHHHHHHHTT-SEEEEEECSSHHHHHHHHHHHHHTCEEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred cchhhhHHHHHhhhhhccC-ccEEEEecCCcchHHHHHHHHHcCCeEEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEE
Confidence 4556677777777776644 689999999999999999999998889999999998878889999999999999999886
Q ss_pred cCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc---CCcEEEeeec-ccccccccC--C-------cceee
Q psy3753 771 PLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI---GNKSWITGQR-RTQSITRSN--L-------VLKEK 837 (928)
Q Consensus 771 p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~---~~~~~i~G~R-~~ES~~R~~--~-------~~~~~ 837 (928)
.... +. ....|. ..+.. .+..|...+...+.+..+ +.+.+++|.- .|.+..|.. . +....
T Consensus 270 ~~~~-f~--~~l~g~---~~pe~-~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~~Et~~~g~~~~iks~~~l~~l 342 (503)
T 2ywb_A 270 AKER-FL--KALKGV---EDPEE-KRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGL 342 (503)
T ss_dssp CHHH-HH--HHHTTC---CCHHH-HHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC-----------------CC
T ss_pred CcHH-HH--HhhcCC---CChHH-HhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccchhhccCCcccccccccccccc
Confidence 5421 11 112232 12211 233333345566766554 6789999994 333333321 0 00001
Q ss_pred cCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcCCCc
Q psy3753 838 DIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLS 879 (928)
Q Consensus 838 d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~Gy~r 879 (928)
.. ..+...++||.+|+.+||+.|.+++|+|++.++++.|..
T Consensus 343 ~~-~~~~~ii~PL~~l~K~EVr~~a~~~glp~~i~~~~P~~~ 383 (503)
T 2ywb_A 343 PE-DLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPG 383 (503)
T ss_dssp CS-SCCCEEECTTTTCCHHHHHHHHHHTTCCHHHHSCCCCCT
T ss_pred cc-cccCceEehhhcCCHHHHHHHHHHcCCChhheecCCCCC
Confidence 11 123568999999999999999999999999988875543
No 27
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.18 E-value=9.4e-11 Score=128.57 Aligned_cols=176 Identities=13% Similarity=0.145 Sum_probs=113.1
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHH-HHHHcCCeEEEE
Q psy3753 692 LNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNK-IYLTYKYKIKVY 769 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~-~~~~~g~~i~~~ 769 (928)
...+++...+.|+..+. .++++|++|||+||+|+++|+.+. +.++.++|+|+|...++..+.+.+ +++++|++++++
T Consensus 3 ~~~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~g~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv 81 (308)
T 2dpl_A 3 WGRFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYV 81 (308)
T ss_dssp HHHHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhhCCCEEEEEEcCCCCChHHHHHHHHHHHHHcCCcEEEE
Confidence 45566777777777765 368999999999999999999987 888999999999865444455555 667899999888
Q ss_pred ecCchhhhHHHH-HhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccc-cccCCccee-e--cCCCC
Q psy3753 770 YPLNSEVNNYIF-KNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSI-TRSNLVLKE-K--DIIHN 842 (928)
Q Consensus 770 ~p~~~~~~~~~~-~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~-~R~~~~~~~-~--d~~~~ 842 (928)
..... +.. ..+. ..+......||..+ ...+.+..+ +.+.+++|...++-. .+....... . -....
T Consensus 82 ~~~~~----f~~~l~~~---~~pe~~~~~~~~~~-~~~l~~~A~~~g~~~la~Gh~~dD~~Et~~~iks~~~~~~l~~~~ 153 (308)
T 2dpl_A 82 DAQDR----FFSALKGV---TDPEEKRKIIGRVF-IEVFEEVAKKIGAEYLIQGTIAPDWIESQGKIKSHHNVGGLPEKL 153 (308)
T ss_dssp ECHHH----HHHHTTTC---CCHHHHHHHHHHHH-HHHHHHHHHHHTCSEEECCCCCC---------------------C
T ss_pred ECCHH----HHHhhhCC---CCHHHHHHHHHHHH-HHHHHHHHHHcCcCEEEECCCCccchhhccchhhhhccccCCccC
Confidence 65421 111 1222 12211223454432 334444443 678999998776432 221111100 0 00122
Q ss_pred CeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcC
Q psy3753 843 GIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNG 876 (928)
Q Consensus 843 ~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~G 876 (928)
+...++||.+|+.+||+.|.+.+|+|++..++.-
T Consensus 154 ~~~virPL~~l~K~EI~~~a~~~glp~~i~~~~P 187 (308)
T 2dpl_A 154 NLKLIEPLRDLYKDEVRELAKFLGLPEKIYNRMP 187 (308)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCCHHHHTCCC
T ss_pred CCeEEEEcccCCHHHHHHHHHHhCCCceeeecCC
Confidence 4568999999999999999999999987766653
No 28
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=99.18 E-value=7.8e-11 Score=130.05 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=109.3
Q ss_pred CCeEEEEcChHHHHHHHHHHHhc----CCC-ceEEEEcCCCC--hHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHh
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRN----NFD-INIFTLNTGRL--HSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKN 783 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~----~~~-i~vvf~DTg~e--fpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~ 783 (928)
++++|++|||+||+|++|++.+. +.+ +.++++|+|.. .++..++++++++.+|++++++..+.. .+....
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~v~~~~~~---~~~~~~ 101 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVR---AFAKEN 101 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCHH---HHHHHT
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEEech---hhhccC
Confidence 57999999999999999999985 467 88999999974 578999999999999999998876532 222233
Q ss_pred CCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeeccccccc-------ccCC----cceeecCCCCCeEEEEeC
Q psy3753 784 GINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSIT-------RSNL----VLKEKDIIHNGIIKFNPL 850 (928)
Q Consensus 784 G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~-------R~~~----~~~~~d~~~~~~~~~~PI 850 (928)
|. ....||...+...+.+..+ +.+.+++|...+|... |... ..+... .+ ..++||
T Consensus 102 ~~--------~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~~gl~~~~~~---~~-~iirPL 169 (317)
T 1wy5_A 102 RM--------SLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLDGLIGFLPK---EE-VIRRPL 169 (317)
T ss_dssp TC--------CHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCHHHHHCSCSE---ET-TEECTT
T ss_pred CC--------CHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHHHHHHHHHHHhCCCcccccCCCCC---CC-eEECCC
Confidence 31 1345777777777777765 6789999998886543 1110 001100 01 369999
Q ss_pred cCCCHHHHHHHHHHCCCCCCh
Q psy3753 851 YNWLEKDIWNYINTYNVPYNT 871 (928)
Q Consensus 851 ~dWt~~DVw~Yi~~~~lp~np 871 (928)
++|+.+||+.|.+.+++|+..
T Consensus 170 l~~~k~eI~~~~~~~gl~~~~ 190 (317)
T 1wy5_A 170 YYVKRSEIEEYAKFKGLRWVE 190 (317)
T ss_dssp TTCCHHHHHHHHHHTTCCCCC
T ss_pred ccCCHHHHHHHHHHcCCCeeE
Confidence 999999999999999999874
No 29
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.92 E-value=3.5e-09 Score=121.64 Aligned_cols=155 Identities=12% Similarity=0.170 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCeEEEEcChHHHHHHHHHHHh-----cCCCceEEEEcCCCC--hHHHHHHHHHHHHHcCCeEEEEecCch
Q psy3753 702 ALNNIVTDYKPAVFASSLAAEDMVLTDLILR-----NNFDINIFTLNTGRL--HSETLNMLNKIYLTYKYKIKVYYPLNS 774 (928)
Q Consensus 702 ~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~-----~~~~i~vvf~DTg~e--fpeT~~~i~~~~~~~g~~i~~~~p~~~ 774 (928)
.+...+...++++|++|||+||+||||++.+ .+.++.++|+|.|.. ..+..++++++++.+|++++++.....
T Consensus 5 ~l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~~ 84 (433)
T 1ni5_A 5 TLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLA 84 (433)
T ss_dssp HHHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred hHHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 4666677778999999999999999999988 456788999999974 456789999999999999988754321
Q ss_pred hhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhcCCcEEEeeeccccccc-------ccC----CcceeecCCCCC
Q psy3753 775 EVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSIT-------RSN----LVLKEKDIIHNG 843 (928)
Q Consensus 775 ~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~~-------R~~----~~~~~~d~~~~~ 843 (928)
..|. . ....|...+-.-+.+..++.+.+++|...++... |.. +..+.......+
T Consensus 85 -------~~~~-~-------~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~dD~aEt~L~~l~RG~g~~gL~gm~~~~~~~~ 149 (433)
T 1ni5_A 85 -------QEGL-G-------IEAQARQARYQAFARTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAG 149 (433)
T ss_dssp -------CSSS-T-------TTTHHHHHHHHHHHHTCCTTEEEECCCCHHHHHHHHHHHHTTTCCTTGGGCCCSEEEETT
T ss_pred -------CCCC-C-------HHHHHHHHHHHHHHHHHhhCCeEEeeccchHHHHHHHHHHHcCCCcccccCCCCccccCC
Confidence 1121 1 1223444444556666666788999998887542 211 001110000124
Q ss_pred eEEEEeCcCCCHHHHHHHHHHCCCCCCh
Q psy3753 844 IIKFNPLYNWLEKDIWNYINTYNVPYNT 871 (928)
Q Consensus 844 ~~~~~PI~dWt~~DVw~Yi~~~~lp~np 871 (928)
...++||++|+.+||..|.+.+++|+..
T Consensus 150 ~~iiRPLl~~~k~eI~~y~~~~gl~~~~ 177 (433)
T 1ni5_A 150 TRLIRPLLARTRGELVQWARQYDLRWIE 177 (433)
T ss_dssp EEEECGGGSCCHHHHHHHHHHTTCCCBC
T ss_pred ceEEccCccCCHHHHHHHHHHcCCCeEE
Confidence 5679999999999999999999999854
No 30
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=98.92 E-value=1.2e-09 Score=113.75 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=102.4
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchh-hh-HHHHHhCCCC-
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSE-VN-NYIFKNGINA- 787 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~-~~-~~~~~~G~~~- 787 (928)
++++|++|||+||+++++++.+.+.++..+++|++....+..++++++++++|++++++...... .. ..+.......
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~~~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLAPNALTRNDIEIE 83 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHCSEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGSTGGGC-------
T ss_pred CCEEEEccCcHHHHHHHHHHHHcCCceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhccccccccccccc
Confidence 47899999999999999999998888889999999755566899999999999998887654211 00 0000000000
Q ss_pred Cccchhhhhh--hhhhccc-chHHHhhc--CCcEEEeeeccccccc-ccCCc----ceee--c-CCCCCeEEEEeCcCCC
Q psy3753 788 FYDSVQMRKK--CCYIRKV-KPLKKALI--GNKSWITGQRRTQSIT-RSNLV----LKEK--D-IIHNGIIKFNPLYNWL 854 (928)
Q Consensus 788 ~~~~~~~~~~--Cc~~~K~-~Pl~~~l~--~~~~~i~G~R~~ES~~-R~~~~----~~~~--d-~~~~~~~~~~PI~dWt 854 (928)
+... ..... .|...+. .-+.++.+ +.+++++|...+|... |...+ .+.. + ....+...++||.+|+
T Consensus 84 ~~~~-~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ii~PL~~~~ 162 (219)
T 3bl5_A 84 VKDG-ELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLN 162 (219)
T ss_dssp --------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCGGGSHHHHHHHHHHHHHHHTSCCEEECTTTTCC
T ss_pred cccc-CCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCCCCCCCHHHHHHHHHHHHhccCCCeEEEeccccCC
Confidence 0000 00111 1332222 22233332 6789999999888532 11000 0110 0 0012455799999999
Q ss_pred HHHHHHHHHHCCCCC---Chhhh--cCCCccCcccCC
Q psy3753 855 EKDIWNYINTYNVPY---NTLYD--NGYLSIGCEPCT 886 (928)
Q Consensus 855 ~~DVw~Yi~~~~lp~---npLYd--~Gy~riGC~~Ct 886 (928)
.+||+.|.+.+++|- +.-+. .|..+.+|-.|+
T Consensus 163 K~ei~~~a~~~glp~~~~~~t~sc~~~~~~~~CG~C~ 199 (219)
T 3bl5_A 163 KAETWKLADELGALDFVKNNTLTCYNGIIADGCGECP 199 (219)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCSTTSCCSSCCSCSH
T ss_pred HHHHHHHHHHcCCCccchhheeeccCCCCCCCCCCCH
Confidence 999999999999942 11111 133336777664
No 31
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.89 E-value=1.4e-09 Score=123.04 Aligned_cols=150 Identities=14% Similarity=0.137 Sum_probs=100.2
Q ss_pred CeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCchhhh----HHHHHhCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLNSEVN----NYIFKNGI 785 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~~~~~----~~~~~~G~ 785 (928)
+++|++|||+||+|+++++.+. +.++..+++|+|. ++..++++++++.+|+ ++.++........ ..+.....
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~g~~V~av~vd~g~--~~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~~~ 79 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQ--GEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAV 79 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTCEEEEEEEESSC--SSCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCC
T ss_pred cEEEEEeChHHHHHHHHHHHHhhCCcEEEEEEeCCC--HHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHhhHHHHHcCCc
Confidence 5899999999999999999997 8889999999998 6678999999999999 7877654321111 11221111
Q ss_pred C--CCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeeccc---ccccccCCcceeecCCCCCeEEEEeCcCC---CH
Q psy3753 786 N--AFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRT---QSITRSNLVLKEKDIIHNGIIKFNPLYNW---LE 855 (928)
Q Consensus 786 ~--~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~---ES~~R~~~~~~~~d~~~~~~~~~~PI~dW---t~ 855 (928)
+ .|.......+.|.. ..+.++.+ +.+++++|.+.+ ++.-|... ... .++.-.+.||.+| +.
T Consensus 80 ~e~~y~~g~~~~R~~~~----~~L~~~A~~~G~~~IatG~~~d~nDq~~f~~g~--~~l---~p~l~ii~PL~~~~~~tK 150 (400)
T 1kor_A 80 YEGYYLLGTSIARPLIA----KHLVRIAEEEGAEAIAHGATGKGNDQVRFELTA--YAL---KPDIKVIAPWREWSFQGR 150 (400)
T ss_dssp BTTTBCCTTTTHHHHHH----HHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHH--HHH---CTTCEEECGGGTCCCCSH
T ss_pred cccccccCCccchHHHH----HHHHHHHHHcCCCEEEECCCCCcccHHHHHHHH--Hhc---CCCCEEEEeecccccCCH
Confidence 0 02211111333432 23444443 678999999885 44322111 111 1244459999999 99
Q ss_pred HHHHHHHHHCCCCCChh
Q psy3753 856 KDIWNYINTYNVPYNTL 872 (928)
Q Consensus 856 ~DVw~Yi~~~~lp~npL 872 (928)
+||+.|++.+++|+..-
T Consensus 151 ~eI~~ya~~~gip~~~~ 167 (400)
T 1kor_A 151 KEMIAYAEAHGIPVPVT 167 (400)
T ss_dssp HHHHHHHHHTTCCCC--
T ss_pred HHHHHHHHHcCCCcccC
Confidence 99999999999999753
No 32
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.88 E-value=1e-09 Score=113.05 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=100.1
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHH---HHhCCCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYI---FKNGINA 787 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~---~~~G~~~ 787 (928)
++++|++|||+||+++++++.+.+.++.++++|++... ..++++++++.+|++++++..........+ ...+.+
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~g~~v~~~~v~~~~~~--~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKLGYNPHLITINFGVIP--SYKLAEETAKILGFKHKVITLDRKIVEKAADMIIEHKYP- 83 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTTEEEEEEEEECSSSC--TTHHHHHHHHHHTCEEEEEECCTHHHHHHHHHHHHHSSS-
T ss_pred CeEEEEEECcHHHHHHHHHHHHcCCCeEEEEEeCCCch--HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHhcCCC-
Confidence 57999999999999999999998888999999999765 558999999999999988876643211111 122211
Q ss_pred CccchhhhhhhhhhcccchHHHhhcCCcEEEeeecccccc---cccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHH
Q psy3753 788 FYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSI---TRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINT 864 (928)
Q Consensus 788 ~~~~~~~~~~Cc~~~K~~Pl~~~l~~~~~~i~G~R~~ES~---~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~ 864 (928)
...|.. .+..-+.+..++.+++++|...+|.. .|.....+.. ..+...++||+.|+.+||+.|.++
T Consensus 84 -------~~~c~~-~~~~~l~~~A~g~~~i~tGh~~dD~~et~~~~gl~~~~~---~~~~~iirPLl~~~k~eI~~~a~~ 152 (203)
T 3k32_A 84 -------GPAIQY-VHKTVLEILADEYSILADGTRRDDRVPKLSYSEIQSLEM---RKNIQYITPLMGFGYKTLRHLASE 152 (203)
T ss_dssp -------HHHHHH-HHHHHHHHHTTTCSEEECCCCTTCCSSCCCHHHHHHHHH---HHTCEEECGGGGCCHHHHHHHHHH
T ss_pred -------ccHHHH-HHHHHHHHHhcCCCEEEECCCcccchhhcchhhccCccc---ccCCeEEeccCCCCHHHHHHHHHH
Confidence 123433 34445555555889999999998754 2322111111 114456899999999999999998
Q ss_pred C
Q psy3753 865 Y 865 (928)
Q Consensus 865 ~ 865 (928)
+
T Consensus 153 ~ 153 (203)
T 3k32_A 153 F 153 (203)
T ss_dssp H
T ss_pred h
Confidence 7
No 33
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.86 E-value=5.3e-09 Score=121.25 Aligned_cols=150 Identities=8% Similarity=0.082 Sum_probs=105.5
Q ss_pred CCeEEEEcChHHHHHHHHHHHh----cCCCceEEEEcCCCC---hHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHh
Q psy3753 711 KPAVFASSLAAEDMVLTDLILR----NNFDINIFTLNTGRL---HSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKN 783 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~----~~~~i~vvf~DTg~e---fpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~ 783 (928)
++++|++|||+||+||||++.+ .+.++.++|+|.|.. ..+..++++++++++|++++++..+... +....
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~~~~---~~~~~ 95 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDVPA---FQRSA 95 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCCHH---HHTTT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEechhh---hhhcc
Confidence 5799999999999999999988 467899999999986 3467899999999999999988665332 11122
Q ss_pred CCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeeccccccc-------ccCC----cceeecCCCCCeEEEEeC
Q psy3753 784 GINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSIT-------RSNL----VLKEKDIIHNGIIKFNPL 850 (928)
Q Consensus 784 G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~-------R~~~----~~~~~d~~~~~~~~~~PI 850 (928)
+. . ....|...+-.-+.++.+ +.+.+++|...++... |... ..+.......+...++||
T Consensus 96 ~~-~-------~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~~~~~~~~~~iiRPL 167 (464)
T 3a2k_A 96 GL-G-------AQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPF 167 (464)
T ss_dssp TC-C-------SHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSCSEEECSSSEEECGG
T ss_pred CC-C-------HHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCCCccccCCCCEEECCC
Confidence 21 1 122345455555666654 5678999998887543 2110 001100001234579999
Q ss_pred cCCCHHHHHHHHHHCCCCCCh
Q psy3753 851 YNWLEKDIWNYINTYNVPYNT 871 (928)
Q Consensus 851 ~dWt~~DVw~Yi~~~~lp~np 871 (928)
++|+.+||..|.+.+++|+..
T Consensus 168 l~~~k~eI~~ya~~~gl~~~~ 188 (464)
T 3a2k_A 168 LAVSRAEIEAYCRQMGLSPRC 188 (464)
T ss_dssp GGSCHHHHHHHHHHTCCSSCS
T ss_pred ccCcHHHHHHHHHHcCCCeEE
Confidence 999999999999999999864
No 34
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.82 E-value=2.1e-08 Score=112.69 Aligned_cols=156 Identities=11% Similarity=-0.005 Sum_probs=107.4
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCC--------hHHHHHHHHHHHHHcCCeEEEEecCchhh----hH
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRL--------HSETLNMLNKIYLTYKYKIKVYYPLNSEV----NN 778 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~e--------fpeT~~~i~~~~~~~g~~i~~~~p~~~~~----~~ 778 (928)
++++|++|||+||+|+++|+.+.+.++..+|++++.+ .++..+.++++++++|++++++....... ..
T Consensus 10 ~kVlVa~SGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~ 89 (376)
T 2hma_A 10 TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEY 89 (376)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHH
T ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHHHHHHHHH
Confidence 4799999999999999999999999999999999854 45778999999999999999886532211 11
Q ss_pred HHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceee--cCCC---------C---
Q psy3753 779 YIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEK--DIIH---------N--- 842 (928)
Q Consensus 779 ~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~--d~~~---------~--- 842 (928)
++.++..-..+.+ -..|....|...+.++.+ +.+.+++|...++...+.....+-. +... +
T Consensus 90 ~l~~y~~G~tpnp---c~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~kdqsyfL~~l~~~~ 166 (376)
T 2hma_A 90 FLAEYRAGRTPNP---DVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQ 166 (376)
T ss_dssp HHHHHHTTCCCCH---HHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGTTCCHHH
T ss_pred HHHHHhcCCCCCh---HHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhCCCchhhhhhccccccccchhccCCChhh
Confidence 2222211011111 234667778888887775 5678999987776431111100000 1000 0
Q ss_pred CeEEEEeCcCCCHHHHHHHHHHCCCCC
Q psy3753 843 GIIKFNPLYNWLEKDIWNYINTYNVPY 869 (928)
Q Consensus 843 ~~~~~~PI~dWt~~DVw~Yi~~~~lp~ 869 (928)
....+.||.+++..||..|.+++++|+
T Consensus 167 l~~~i~PL~~~~K~eVr~~A~~~gl~~ 193 (376)
T 2hma_A 167 LQKTMFPLGHLEKPEVRRLAEEAGLST 193 (376)
T ss_dssp HTTEECTTTTCCHHHHHHHHHHTTCTT
T ss_pred cCcEEecCcCCCHHHHHHHHHHcCCCc
Confidence 024699999999999999999999985
No 35
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.73 E-value=2.2e-08 Score=117.69 Aligned_cols=178 Identities=12% Similarity=0.156 Sum_probs=113.3
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChH-HHHHHHHHHHHHcCCeEEE
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHS-ETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efp-eT~~~i~~~~~~~g~~i~~ 768 (928)
+...+++..++.|+..+.. +++++++|||+||+|+++|+.+. +.++.++|+|+|...+ |..+.++.+++++|+++++
T Consensus 212 ~~~~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~G~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~v 290 (527)
T 3tqi_A 212 TTKHIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAIGDQLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVIC 290 (527)
T ss_dssp CSHHHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHHGGGEEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEE
T ss_pred hHHHHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHhCCeEEEEEeccCCCChhHHHHHHHHHHHHcCCcEEE
Confidence 3456677777888877765 78999999999999999999997 8889999999998654 4555555688999999988
Q ss_pred EecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccc-cccCCc----ceee-c--
Q psy3753 769 YYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSI-TRSNLV----LKEK-D-- 838 (928)
Q Consensus 769 ~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~-~R~~~~----~~~~-d-- 838 (928)
+..... +. ........+......|+.. ...-+.+..+ +.+.+++|.-.+|-. .+.... .+.. .
T Consensus 291 v~~~~~----~~--~~l~g~~~~~~~r~~~~~~-~~~~~~~~A~~~g~~~la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l 363 (527)
T 3tqi_A 291 VDAKDR----FM--KALKGISDPEEKRKIAGEQ-FIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHNV 363 (527)
T ss_dssp ECCHHH----HH--SSSSSCCCHHHHHHHHHHH-HHHHHHHTTTTTTCCEEECCCCHHHHHCC-----------------
T ss_pred EeChHH----HH--HhhcCCCChhhhhhhhHHH-HHHHHHHHHHHcCCCEEEccccCCccccccccCCChhheeeeeccc
Confidence 753211 11 1112222222222334332 2334444443 567889998554432 110000 0000 0
Q ss_pred ---CCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhcC
Q psy3753 839 ---IIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNG 876 (928)
Q Consensus 839 ---~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~G 876 (928)
....+.-.+.||.+++.+||.+|.++.|+|++-.+++-
T Consensus 364 ~gl~~~~~~~iirPL~~l~K~EIr~~a~~lGlp~~~v~~~P 404 (527)
T 3tqi_A 364 GGLPLNMELKLIEPLRELFKDEVRKLGLELGLPADLIYRHP 404 (527)
T ss_dssp ---------CEECTTTTCCHHHHHHHHHHHTCCHHHHTCCC
T ss_pred ccCcccccCccccchhcCCHHHHHHHHHHcCCChhhhccCC
Confidence 00112336899999999999999999999987777663
No 36
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.72 E-value=2.1e-08 Score=105.43 Aligned_cols=157 Identities=16% Similarity=0.111 Sum_probs=97.1
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCe-EEEEecCc-hhhh-HHHHHhC--C
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYK-IKVYYPLN-SEVN-NYIFKNG--I 785 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~-i~~~~p~~-~~~~-~~~~~~G--~ 785 (928)
++++|++|||+||+++++++.+.+.++..+++|.|....+-.++++++++.+|++ .+++.-.. ..+. ..+.... .
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~~~l~~~~~~v 82 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATSSLTRDSIPV 82 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHCSEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHHHHHHTTCCC
T ss_pred CCEEEEecCcHHHHHHHHHHHHcCCCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhhhhcccccccc
Confidence 4689999999999999999999888888999999976666789999999999998 88775441 1111 1111111 0
Q ss_pred C--CCccchhhhhhhhhhccc--chH-HHhh--cCCcEEEeeeccccccc-ccCCc----ce----eecCCCCCeEEEEe
Q psy3753 786 N--AFYDSVQMRKKCCYIRKV--KPL-KKAL--IGNKSWITGQRRTQSIT-RSNLV----LK----EKDIIHNGIIKFNP 849 (928)
Q Consensus 786 ~--~~~~~~~~~~~Cc~~~K~--~Pl-~~~l--~~~~~~i~G~R~~ES~~-R~~~~----~~----~~d~~~~~~~~~~P 849 (928)
+ .+... .....|...++. .-+ ..+. .+.+.+++|...+|... +...+ .+ .... ..+...++|
T Consensus 83 ~~~~~~~~-~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~~~~~r~~~~~~~~~~~~~~~-~~~~~i~~P 160 (232)
T 2pg3_A 83 PDYDANAQ-GIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAIVLGI-ARDIRFETP 160 (232)
T ss_dssp CC----------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCGGGSHHHHHHHHHHHHHHH-TSCCEEECT
T ss_pred cccccccC-CCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCCCCCCCHHHHHHHHHHHHHhC-CCCeEEEEe
Confidence 0 00000 001112111111 111 2222 26788999998887531 11100 00 0000 124556899
Q ss_pred CcCCCHHHHHHHHHHCCC-CC
Q psy3753 850 LYNWLEKDIWNYINTYNV-PY 869 (928)
Q Consensus 850 I~dWt~~DVw~Yi~~~~l-p~ 869 (928)
|.+|+..||+.|.+++++ |+
T Consensus 161 L~~~~K~ei~~~a~~~gl~~~ 181 (232)
T 2pg3_A 161 LMWLNKAETWALADYYQQLDT 181 (232)
T ss_dssp TTTCCHHHHHHHHHHTTCHHH
T ss_pred cCCCCHHHHHHHHHHcCCCcc
Confidence 999999999999999999 63
No 37
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=98.71 E-value=6.2e-08 Score=104.15 Aligned_cols=164 Identities=11% Similarity=0.071 Sum_probs=108.2
Q ss_pred hhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhcC-CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEE
Q psy3753 692 LNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRNN-FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~~-~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~ 768 (928)
.+...+...+.|+..+... ++++|++|||+||+++++|+.+.. .++..++++++...+++.++++++++.+|+++.+
T Consensus 5 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~ 84 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEKFSIPYTE 84 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4455666667777766543 589999999999999999999986 6889999999988889999999999999999887
Q ss_pred EecCchhhhHHHHHhCCCCCccchhhhhhh--hhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCCCCe
Q psy3753 769 YYPLNSEVNNYIFKNGINAFYDSVQMRKKC--CYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIHNGI 844 (928)
Q Consensus 769 ~~p~~~~~~~~~~~~G~~~~~~~~~~~~~C--c~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~ 844 (928)
+.... .+..+...... . . ....| |...+...+....+ +..++.+|- ++|...... ... ..+.
T Consensus 85 i~i~~-~~~~~~~~~~~--~-~---~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~~Gy~----t~~--gd~~ 150 (268)
T 1xng_A 85 YSIAP-YDAIFSSHFKD--A-S---LTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERMLGYG----TLF--GDLA 150 (268)
T ss_dssp CCCHH-HHHHHHHHCTT--C-C---HHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHHHTCS----CTT--TTTC
T ss_pred EeChH-HHHHHHHHhhh--c-C---CchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHhcCcc----ccc--CCCC
Confidence 64321 12222222221 0 1 11223 22233333444433 445555554 355432211 111 1123
Q ss_pred EEEEeCcCCCHHHHHHHHHHCCCCC
Q psy3753 845 IKFNPLYNWLEKDIWNYINTYNVPY 869 (928)
Q Consensus 845 ~~~~PI~dWt~~DVw~Yi~~~~lp~ 869 (928)
..++||.+|+..||+.|.+..++|.
T Consensus 151 ~~i~PL~~l~K~ev~~la~~~gip~ 175 (268)
T 1xng_A 151 CAINPIGELFKTEVYELARRLNIPK 175 (268)
T ss_dssp CSEETTTTSCHHHHHHHHHHTTCCH
T ss_pred eeEEecCCCCHHHHHHHHHHcCCcH
Confidence 4699999999999999999999983
No 38
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=98.61 E-value=9.3e-08 Score=102.10 Aligned_cols=165 Identities=12% Similarity=0.103 Sum_probs=105.0
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhcC--CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEE
Q psy3753 692 LNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNN--FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVY 769 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~~--~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~ 769 (928)
.+.+.+...+.|+.. ..++++|++|||+||+++++|+.+.. .++..+++|++.. ++.++++++++.+|++++++
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~--~~~~~a~~~a~~lgi~~~~i 81 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFEN--KDVEDAKLVAEKLGIGYKVI 81 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCS--THHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCc--hHHHHHHHHHHHhCCCEEEE
Confidence 445555555566554 44789999999999999999999875 5788999999965 78899999999999988776
Q ss_pred ecCchhhhHHHHHhCCCCCccchhhhhhh--hhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCCCCeE
Q psy3753 770 YPLNSEVNNYIFKNGINAFYDSVQMRKKC--CYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIHNGII 845 (928)
Q Consensus 770 ~p~~~~~~~~~~~~G~~~~~~~~~~~~~C--c~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~ 845 (928)
.-.. .+..+....... .. ....| |...+..-+....+ +..++.+|... |........ . ..+..
T Consensus 82 ~i~~-~~~~~~~~l~~~--~~---~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~-e~~~Gy~t~---~---g~~~~ 148 (257)
T 2e18_A 82 NIKP-IVDSFVENLELN--LD---RKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRS-EFLTGYFTK---W---GDGAS 148 (257)
T ss_dssp CCHH-HHHHHHHHHCSC--CC---HHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHH-HHHHTCSCT---T---STTCS
T ss_pred EChH-HHHHHHHHhccc--cc---cchhHHHHHHHHHHHHHHHHHHcCCEEEEcCchh-HHhcCCeec---c---CCCcc
Confidence 4322 122233222211 01 11222 11223333333333 55666677643 332111110 0 11334
Q ss_pred EEEeCcCCCHHHHHHHHHHCCCCCChhh
Q psy3753 846 KFNPLYNWLEKDIWNYINTYNVPYNTLY 873 (928)
Q Consensus 846 ~~~PI~dWt~~DVw~Yi~~~~lp~npLY 873 (928)
.++||.+|+..||+.|.+.+++|++...
T Consensus 149 ~i~Pl~~l~K~ev~~la~~~gip~~i~~ 176 (257)
T 2e18_A 149 DYAPIINLYKTEVWEIAKRIGVPERIVK 176 (257)
T ss_dssp SBCTTTTSCHHHHHHHHHHHTCCHHHHH
T ss_pred CEeecCCCcHHHHHHHHHHcCCCHHHhC
Confidence 5899999999999999999999865443
No 39
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.59 E-value=2.2e-07 Score=98.54 Aligned_cols=165 Identities=12% Similarity=0.132 Sum_probs=107.4
Q ss_pred chhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEE
Q psy3753 691 PLNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIK 767 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~ 767 (928)
..+...+.....|+..+++. ++++|++|||+||+++++|+.+. +.++..++++.+...++..+.++++++.+|++.+
T Consensus 5 ~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~g~~v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~ 84 (249)
T 3p52_A 5 DWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQISNKANLEDALRLCADLNLEYK 84 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSCCSSCHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 45566677777888877775 47999999999999999999987 8889999999988777888999999999999987
Q ss_pred EEecCchhhhHHHHHhCCCCCccchhhhhhh--hhhcccchHHHhhcCCcEEEee-ecccccccccCCcceeecCCCCCe
Q psy3753 768 VYYPLNSEVNNYIFKNGINAFYDSVQMRKKC--CYIRKVKPLKKALIGNKSWITG-QRRTQSITRSNLVLKEKDIIHNGI 844 (928)
Q Consensus 768 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~C--c~~~K~~Pl~~~l~~~~~~i~G-~R~~ES~~R~~~~~~~~d~~~~~~ 844 (928)
++.-. ..+..+. .... .. .....| |...+..-+..+.+...+.++| --++|...-.. ... ....
T Consensus 85 ~v~i~-~~~~~~~-~~~~----~~-~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~se~~~g~~---t~~---gd~~ 151 (249)
T 3p52_A 85 IIEIQ-SILDAFI-KQSE----NT-TLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYG---TIY---GDLA 151 (249)
T ss_dssp ECCCH-HHHHHHH-TTCS----CC-CHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHHHTCS---CTT---TTTC
T ss_pred EEECc-HHHHHHH-Hhcc----cc-CCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCHHHHHccch---hhh---cccc
Confidence 66332 1122221 1111 11 112233 3444444444444333333332 23344321111 111 1122
Q ss_pred EEEEeCcCCCHHHHHHHHHHCCCC
Q psy3753 845 IKFNPLYNWLEKDIWNYINTYNVP 868 (928)
Q Consensus 845 ~~~~PI~dWt~~DVw~Yi~~~~lp 868 (928)
.-++||.+++..||..+.+..|+|
T Consensus 152 ~~i~PL~~l~K~eV~~la~~~gip 175 (249)
T 3p52_A 152 CAFNPIGSLYKSEIYALAKYLNLH 175 (249)
T ss_dssp CSEETTTTSCHHHHHHHHHHTTCC
T ss_pred CccccccCCcHHHHHHHHHHcCCc
Confidence 358999999999999999999997
No 40
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.59 E-value=1.3e-07 Score=106.26 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=104.5
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCC--------hHHHHHHHHHHHHHcCCeEEEEecCchhh----hH
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRL--------HSETLNMLNKIYLTYKYKIKVYYPLNSEV----NN 778 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~e--------fpeT~~~i~~~~~~~g~~i~~~~p~~~~~----~~ 778 (928)
++++|++||||||+|+++|+.+.+.++..+|+|++.+ .++..++++++++++|++++++....... ..
T Consensus 18 ~kVvVa~SGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~ 97 (380)
T 2der_A 18 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFEL 97 (380)
T ss_dssp CEEEEECCSCSTTHHHHHHHHTTCCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHH
T ss_pred CEEEEEEEChHHHHHHHHHHHHcCCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHH
Confidence 4699999999999999999999999999999998764 35678999999999999999886532110 11
Q ss_pred HHHHhCCCCCccchhhhhhhhhhcccchHHHhhc---CCcEEEeeecccccc--cccCCcceeecCCC---------C--
Q psy3753 779 YIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI---GNKSWITGQRRTQSI--TRSNLVLKEKDIIH---------N-- 842 (928)
Q Consensus 779 ~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~---~~~~~i~G~R~~ES~--~R~~~~~~~~d~~~---------~-- 842 (928)
++.++..-..+.+ -..|....|...+.+... +.+.+++|.-+++.. .|..+. ...+... +
T Consensus 98 ~~~ey~~G~tpnp---c~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~~l~-rg~~~~kdqsy~L~~l~~~ 173 (380)
T 2der_A 98 FLAEYKAGRTPNP---DILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLL-RGLDSNKDQSYFLYTLSHE 173 (380)
T ss_dssp HHHHHHTTCCCCH---HHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEE-CCSSTTTCCGGGGSSCCHH
T ss_pred HHHHHHcCCCCCh---hHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccccccchHHHh-cccccccccceeecCCChh
Confidence 2223311001111 134556668777776653 567899998776532 121110 0001000 0
Q ss_pred C-eEEEEeCcCCCHHHHHHHHHHCCCCC
Q psy3753 843 G-IIKFNPLYNWLEKDIWNYINTYNVPY 869 (928)
Q Consensus 843 ~-~~~~~PI~dWt~~DVw~Yi~~~~lp~ 869 (928)
+ ...+.||.+++.+||..|.++++||+
T Consensus 174 ~l~~~i~PL~~~~K~eVr~~A~~~Gl~~ 201 (380)
T 2der_A 174 QIAQSLFPVGELEKPQVRKIAEDLGLVT 201 (380)
T ss_dssp HHHHEECCGGGSCHHHHHHHHHHTTCC-
T ss_pred hcceeEccCCCCCHHHHHHHHHHcCCCC
Confidence 1 34799999999999999999999985
No 41
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.53 E-value=2.4e-07 Score=108.91 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=112.0
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCChHHHHHHHHH-HHHHcCCeEEE
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRLHSETLNMLNK-IYLTYKYKIKV 768 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~efpeT~~~i~~-~~~~~g~~i~~ 768 (928)
.....++..++.|+..+.. +++++++|||+||+|+++|+.+. +.++..+|+|+|.......+.+.+ +++.+|+++++
T Consensus 209 ~~~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~G~~v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~ 287 (525)
T 1gpm_A 209 TPAKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVH 287 (525)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEE
T ss_pred hHHHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHhCCCEEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEE
Confidence 4567777888888877654 68999999999999999999997 788999999999765444555544 78889999988
Q ss_pred EecCchhhhHHHH-HhCCCCCccchhhhhhhhhhcccchHHHhhc---CCcEEEeeeccc---cccc---ccCCcc----
Q psy3753 769 YYPLNSEVNNYIF-KNGINAFYDSVQMRKKCCYIRKVKPLKKALI---GNKSWITGQRRT---QSIT---RSNLVL---- 834 (928)
Q Consensus 769 ~~p~~~~~~~~~~-~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~---~~~~~i~G~R~~---ES~~---R~~~~~---- 834 (928)
+.... .+.. ..|. ..+......|+.. ...-+.+..+ +.+.+++|.-.+ |+.. |.....
T Consensus 288 v~~~~----~f~~~l~~~---~~pe~~~~~~~~~-~~~~l~~~A~~~~g~~~l~~Gt~~~D~~E~~~~~~~~s~~iks~~ 359 (525)
T 1gpm_A 288 VPAED----RFLSALAGE---NDPEAKRKIIGRV-FVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHH 359 (525)
T ss_dssp EECHH----HHHHHHTTC---CCHHHHHHHHHHH-HHHHHHHHHHHSSSEEEEECCCCHHHHHHTTC-------------
T ss_pred EeccH----HHHHhhcCC---CChHHhhhhhhHH-HHHHHHHHHHhcCCCCEEEeCCCCcchhhhcCccccccccccccc
Confidence 75432 1112 1232 1222122234333 3344544444 457888998432 2210 110000
Q ss_pred -eeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 835 -KEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 835 -~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
+..-........+.||.+|+..||++|.++.|+|++..+++
T Consensus 360 ~l~gl~~~~~~~~i~PL~~l~K~EVr~la~~lglp~~i~~~~ 401 (525)
T 1gpm_A 360 NVGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRH 401 (525)
T ss_dssp ---------CCEEECTTTTCCHHHHHHHHHHTTCCHHHHTSC
T ss_pred cccccccccCCcEEehhhcCCHHHHHHHHHHcCCCHHhcccC
Confidence 00000011234699999999999999999999998766765
No 42
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.48 E-value=5.4e-07 Score=95.53 Aligned_cols=175 Identities=10% Similarity=0.068 Sum_probs=109.7
Q ss_pred CchhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeEE
Q psy3753 690 IPLNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIK 767 (928)
Q Consensus 690 ~~l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~ 767 (928)
...+...+...+.|+..+.+. ++++|++|||+||+++++|+.+.+.+...++++++...++..++++++++.+|++.+
T Consensus 7 ~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~~~~~~av~~~~~~~~~~~~~~a~~~a~~lgi~~~ 86 (249)
T 3fiu_A 7 FSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQHQDMQDALELIEMLNIEHY 86 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTTSCEEEEECCCTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHhCCCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 345666777777777777655 479999999999999999999988766689999987778889999999999999887
Q ss_pred EEecCchhhhHHHHHhCCCCCccchhhhhhhh-----hhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCC
Q psy3753 768 VYYPLNSEVNNYIFKNGINAFYDSVQMRKKCC-----YIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDII 840 (928)
Q Consensus 768 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc-----~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~ 840 (928)
++.-. ..++.+..... +.+.... ....|| ...+..-+..+.+ +..+..|| -++|...-.. ...
T Consensus 87 ~v~~~-~~~~~~~~~~~-~~~~~~~-~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TG-n~sE~~~G~~----t~~-- 156 (249)
T 3fiu_A 87 TISIQ-PAYEAFLASTQ-SFTNLQN-NRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTD-NACEWYMGYF----TKF-- 156 (249)
T ss_dssp ECCCH-HHHHHHHHHTG-GGC-------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCC-CHHHHHHTCS----CTT--
T ss_pred EEECh-HHHHHHHHHHH-hhccCCC-CcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECC-CHHHHhcCch----hcc--
Confidence 76432 22233222110 0000000 112233 2223333333333 34444556 4455421111 111
Q ss_pred CCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 841 HNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 841 ~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
..+..-++||.+++..||..+.+..|+|- ..+++
T Consensus 157 gd~~~~i~PL~~l~K~eVr~lA~~lglp~-~i~~k 190 (249)
T 3fiu_A 157 GDGAADILPLVNLKKSQVFELGKYLDVPK-NILDK 190 (249)
T ss_dssp TTTCCSBCTTTTCCHHHHHHHHHHTTCCH-HHHHS
T ss_pred CCCCcceeecccCcHHHHHHHHHHcCCcH-HHccC
Confidence 11223699999999999999999999972 34554
No 43
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.20 E-value=1.5e-06 Score=98.81 Aligned_cols=168 Identities=11% Similarity=0.087 Sum_probs=103.7
Q ss_pred cCCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCchhhhH---HHHHhCC
Q psy3753 710 YKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLNSEVNN---YIFKNGI 785 (928)
Q Consensus 710 ~~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~~~~~~---~~~~~G~ 785 (928)
.++++|++|||+||+|+++++.+.+.++..+++|.|..-.+-.+++++.++++|+ ++.++.-......+ .+.....
T Consensus 10 ~~KVvVA~SGGlDSSvll~~L~e~G~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~eef~~~v~p~i~~na~ 89 (455)
T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAF 89 (455)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHcCCEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeChHHHHHHhHHHHHcCCc
Confidence 3579999999999999999999998899999999996423346889999999999 78777542111111 1111111
Q ss_pred C------CCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecc--cccccccCCcceeecCCCCCeEEEEeCcC---
Q psy3753 786 N------AFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRR--TQSITRSNLVLKEKDIIHNGIIKFNPLYN--- 852 (928)
Q Consensus 786 ~------~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~--~ES~~R~~~~~~~~d~~~~~~~~~~PI~d--- 852 (928)
. .|+-.....|-|.. .-+.++.+ +.+.+.+|... ++. .|-....... .++.-.+.|+.+
T Consensus 90 y~~eg~rcY~l~t~~aRp~i~----~~l~e~A~e~Gad~IAtGht~kgnDq-~rf~~~~~al---~p~l~viaPlr~~~l 161 (455)
T 1k92_A 90 HNTTGGLTYFNTTPLGRAVTG----TMLVAAMKEDGVNIWGDGSTYKGNDI-ERFYRYGLLT---NAELQIYKPWLDTDF 161 (455)
T ss_dssp CCEETTEECCCHHHHHHHHHH----HHHHHHHHHTTCCEEECCCCTTSSHH-HHHHHHHHHH---CTTCEEECGGGCHHH
T ss_pred ccccCceecccCCcchHHHHH----HHHHHHHHHcCCCEEEECCcCCCCCH-HHHHHHHHhc---CCCCEEECeeccccc
Confidence 0 01111111122221 11223332 67889999842 211 1221111111 235556899988
Q ss_pred ----CCHHHHHHHHHHCCCCCChhhhcCCCccCcccC
Q psy3753 853 ----WLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPC 885 (928)
Q Consensus 853 ----Wt~~DVw~Yi~~~~lp~npLYd~Gy~riGC~~C 885 (928)
++.+||..|.+++|+|+..--+.-|++--|+-+
T Consensus 162 l~~~lsK~EI~~yA~~~GIp~~~t~~~pyS~d~nl~g 198 (455)
T 1k92_A 162 IDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLG 198 (455)
T ss_dssp HHHSSSHHHHHHHHHHTTCCCCCCCCCSSEEEEETTE
T ss_pred cccCCCHHHHHHHHHHcCCCcccCCCCCCccCCceEE
Confidence 699999999999999997544555666555433
No 44
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.16 E-value=6.4e-06 Score=97.21 Aligned_cols=177 Identities=13% Similarity=0.085 Sum_probs=109.2
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-CCCceEEEEcCCCC-hHHHHHHHHHHHHHc-CCeEE
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-NFDINIFTLNTGRL-HSETLNMLNKIYLTY-KYKIK 767 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~~~i~vvf~DTg~e-fpeT~~~i~~~~~~~-g~~i~ 767 (928)
....+++..++.|+.. ...+++++++|||.||+|+++|+.+. +.++..+|+|+|.. ..|..+.++.+++.+ |++++
T Consensus 237 ~~~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~G~~v~~v~vd~g~~~~~e~~~~~~~~~~~l~gi~~~ 315 (556)
T 3uow_A 237 DPIRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAENVYTFLKSTFPDMNIT 315 (556)
T ss_dssp CHHHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHHHHCTTSEEE
T ss_pred ccccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHhCCeEEEEEEecCCCChHHHHHHHHHHHHhcCCCCeE
Confidence 3455666666666665 32468999999999999999999886 78899999999975 456777778899999 99999
Q ss_pred EEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhhc--C-C---cEEEeeeccccc-ccccC---Ccceee
Q psy3753 768 VYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--G-N---KSWITGQRRTQS-ITRSN---LVLKEK 837 (928)
Q Consensus 768 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~-~---~~~i~G~R~~ES-~~R~~---~~~~~~ 837 (928)
++.-... ++ ....| ..++......|+.. ...-+.+..+ + . +...+|.-.++- ..+.. ...+..
T Consensus 316 ~vd~~~~-f~--~~l~g---~~~pe~kr~iig~~-f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ies~~~~g~~~~iks 388 (556)
T 3uow_A 316 KIDASEN-FL--SNLQG---VTDPEQKRKIIGKL-FIEEFEKAVNNIDIDINKTFLLQGTLYPDIIESKCSKNLSDTIKT 388 (556)
T ss_dssp EEECHHH-HH--HHTTT---CCCHHHHHHHHHHH-HHHHHHHHHHTTCCCGGGEEEECCCCHHHHHHHSCC---------
T ss_pred EeccHHH-HH--HhhcC---CCChHHHHHHHHHH-HHHHHHHHHHHcCCcccccccccCccChHHHhhcccccccceecc
Confidence 8854321 11 11122 22222222223322 2233333332 2 2 566777533221 11110 000000
Q ss_pred c------CCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 838 D------IIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 838 d------~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
. ......-.+.||.+++..||..|-++.|||++-.+++
T Consensus 389 ~~n~~gl~~~~~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~ 432 (556)
T 3uow_A 389 HHNVGGLPKNLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRH 432 (556)
T ss_dssp ----------CCCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCC
T ss_pred cccccccccccccceEeecccCcHHHHHHHHHHcCCCHHHhCCC
Confidence 0 0011334689999999999999999999998777776
No 45
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.15 E-value=4e-06 Score=95.50 Aligned_cols=146 Identities=8% Similarity=-0.005 Sum_probs=93.8
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCC-CChHHHHHHHHHHHHHc-----CCeEEEEecCchhhhHHHHHhC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTG-RLHSETLNMLNKIYLTY-----KYKIKVYYPLNSEVNNYIFKNG 784 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg-~efpeT~~~i~~~~~~~-----g~~i~~~~p~~~~~~~~~~~~G 784 (928)
+++++++|||+||+|+++++.+.+.++..+|+|++ +..++..+.++++++.+ |+++.++.-... ... +....
T Consensus 188 ~kvlvalSGGvDS~vll~ll~~~G~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~-~~~-i~~~~ 265 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEV-QKT-INKEI 265 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHBTEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHH-HHH-HHHHS
T ss_pred CeEEEEeCCCChHHHHHHHHHHcCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcHH-HHH-HHhcC
Confidence 46999999999999999999999888999999986 33456667777777777 888887753211 111 11111
Q ss_pred CCCCccchhhhhhh--hhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHH
Q psy3753 785 INAFYDSVQMRKKC--CYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWN 860 (928)
Q Consensus 785 ~~~~~~~~~~~~~C--c~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~ 860 (928)
+ . ...| |......-+.+..+ +...+++|.-.+|-............. ..+...++||..|+.+||.+
T Consensus 266 -~---~----~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ae~~l~~l~~~~~-~~~~~virPL~~l~K~eI~~ 336 (413)
T 2c5s_A 266 -P---S----SYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINE-VTNYPVIRPLITMDKLEIIK 336 (413)
T ss_dssp -C---G----GGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGG-GCCSCEECTTTTCCHHHHHH
T ss_pred -C---c----ccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHhcccc-cCCCEEEeccCCCCHHHHHH
Confidence 1 1 0122 22222222333332 567899998877653221111111111 12345799999999999999
Q ss_pred HHHHCCC
Q psy3753 861 YINTYNV 867 (928)
Q Consensus 861 Yi~~~~l 867 (928)
|.+..|+
T Consensus 337 ~a~~~Gl 343 (413)
T 2c5s_A 337 IAEEIGT 343 (413)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 9999998
No 46
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.05 E-value=5e-06 Score=94.17 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=93.2
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCe-EEEEecCchhhhHH----HHHhCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYK-IKVYYPLNSEVNNY----IFKNGI 785 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~-i~~~~p~~~~~~~~----~~~~G~ 785 (928)
++++|++|||+||+|+++++.+.+.++..+++|.|.. +-.++++++++++|++ +.++........++ +.....
T Consensus 6 ~kVvvalSGGlDSsvll~lL~e~G~eV~av~vd~g~~--~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~a~ 83 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQK--EDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSAL 83 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHTTEEEEEEEEESSCC--CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCC
T ss_pred CeEEEEEcChHHHHHHHHHHHHcCCEEEEEEEECCcH--HHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHHhCcc
Confidence 4799999999999999999999887888999999974 3468999999999997 77664321111111 111111
Q ss_pred C--CCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccc-cccccCCcceeecCCCCCeEEEEeCc------CC-
Q psy3753 786 N--AFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQ-SITRSNLVLKEKDIIHNGIIKFNPLY------NW- 853 (928)
Q Consensus 786 ~--~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~E-S~~R~~~~~~~~d~~~~~~~~~~PI~------dW- 853 (928)
+ .+.-.....+.|-. .-+.++.+ +.+++++|..... ...|........ .++.-.+.|+. +|
T Consensus 84 ~e~~y~~g~~~aRp~i~----~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~lg~~~l---~p~l~ii~Pl~d~~~ll~~~ 156 (413)
T 2nz2_A 84 YEDRYLLGTSLARPCIA----RKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSL---APQIKVIAPWRMPEFYNRFK 156 (413)
T ss_dssp BTTTBCCTTTTHHHHHH----HHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHH---CTTCEEECGGGCHHHHTTCC
T ss_pred cccccccccccchHHHH----HHHHHHHHHcCCCEEEECCcCcccchHHHHHHHHhc---CCCCceeccccchhhhccCC
Confidence 0 01000000111111 11223332 6789999987632 112211111001 23456789999 89
Q ss_pred CHHHHHHHHHHCCCCCC
Q psy3753 854 LEKDIWNYINTYNVPYN 870 (928)
Q Consensus 854 t~~DVw~Yi~~~~lp~n 870 (928)
+.+||..|.+++|+|+.
T Consensus 157 sK~EI~~yA~~~Gip~~ 173 (413)
T 2nz2_A 157 GRNDLMEYAKQHGIPIP 173 (413)
T ss_dssp -CHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHcCCCee
Confidence 99999999999999985
No 47
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=98.03 E-value=5.5e-06 Score=89.58 Aligned_cols=123 Identities=16% Similarity=0.337 Sum_probs=93.2
Q ss_pred cEEeccCCCEEEccCCcCCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhcccCcCCCCC
Q psy3753 370 ELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGK 449 (928)
Q Consensus 370 ~irlT~~q~i~l~gi~~~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~~~~~~~~~k 449 (928)
+||++-... +.+++.-.++.|+.+|+...+. .+++|| +|....+|.++++.++.+++. .++ ..
T Consensus 239 TIRVSLt~~------p~~Ev~va~~ILqslglR~~g~----~~ISCP---tCGRt~~dl~~~~~~ie~~l~-~~~---~~ 301 (366)
T 3noy_A 239 TVRVSLTDD------PVVEVETAYEILKSLGLRRRGV----EIVACP---TCGRIEVDLPKVVKEVQEKLS-GVK---TP 301 (366)
T ss_dssp EECCCCSSC------HHHHHHHHHHHHHHTTSCCSSC----EEEECC---CCTTCCSCHHHHHHHHHHHTT-TCC---SC
T ss_pred eEEEeCCCC------cHHHHHHHHHHHHhcCCCcCCC----EEEECC---CCCCccccHHHHHHHHHHHHh-CCC---CC
Confidence 677643322 5677777889999999876553 699998 566666788999999999885 333 27
Q ss_pred eEEEEecCC-CCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHh
Q psy3753 450 ISLNISGCI-NSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRR 523 (928)
Q Consensus 450 ~ki~iSGCp-n~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~ 523 (928)
+||+|-||. |+.+.+.-+|||+.|. .....||.+|..- . .++.+++.+.+.++++-|.++
T Consensus 302 lkVAVMGCvVNGPGEa~~ADiGiagg----~~~~~lf~~Ge~v---------~-~v~~~~~~~~l~~~I~~~~~~ 362 (366)
T 3noy_A 302 LKVAVMGCVVNAIGEAREADIGLACG----RGFAWLFKHGKPI---------K-KVDESEMVDELLKEIQNMEKD 362 (366)
T ss_dssp CEEEEESSSHHHHHHTTTCSEEEEEC----SSEEEEEETTEEE---------E-EEESCHHHHHHHHHHHC----
T ss_pred CEEEEEcccccCCchhhhCCEeEecC----CCceEEEECCEEe---------e-ecCHHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999994 2467899999631 1 378889998888888866543
No 48
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=97.73 E-value=7.3e-05 Score=90.11 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=66.1
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHHHHHHhc-C-CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEE
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRN-N-FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKV 768 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll~L~~~~-~-~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~ 768 (928)
....+.+..++.|+..+.. +++++++|||+||+|+++|+.+. + .++..+|+|.|..-....+.++++++++|+++++
T Consensus 222 ~~~~~~~~~i~~Ir~~v~~-~~vvv~lSGGvDSsVla~Ll~~alG~~~V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~v 300 (697)
T 2vxo_A 222 TVQNRELECIREIKERVGT-SKVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKV 300 (697)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHSCGGGEEEEEEECSCCCSSTTHHHHHHHHHTTCCEEE
T ss_pred hhhHHHHHHHHHHHHHhcc-cceEEEccCchHHHHHHHHHHHhcCCceEEEEEeccccCCcchHHHHHHHHHHhCCcEEE
Confidence 4566777788888877643 68999999999999999999987 6 6899999999976445568889999999999888
Q ss_pred Eec
Q psy3753 769 YYP 771 (928)
Q Consensus 769 ~~p 771 (928)
+.-
T Consensus 301 vdi 303 (697)
T 2vxo_A 301 INA 303 (697)
T ss_dssp EEC
T ss_pred ecc
Confidence 754
No 49
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=97.63 E-value=5.3e-05 Score=85.25 Aligned_cols=151 Identities=16% Similarity=0.197 Sum_probs=92.5
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCC-eEEEEecCchhhhHH----HHHhCC
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKY-KIKVYYPLNSEVNNY----IFKNGI 785 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~-~i~~~~p~~~~~~~~----~~~~G~ 785 (928)
++++|++|||.||+|++.++.+.+.++..+++|.|.. +-.+.++++++++|+ ++.++.-......++ +..+..
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G~eViavt~d~Gq~--~Ele~A~~vA~~lGi~~~~VvDl~eef~~~v~~p~i~~na~ 92 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQK--DDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAM 92 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEESSCC--CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHTTTCC
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEEEcCCH--HHHHHHHHHHHHcCCceEEEEecHHHHHHhhhhHHHhcCCc
Confidence 4699999999999999999999998999999999963 235778999999999 777774421111111 111110
Q ss_pred --CCCccchhhhhhhhhhcccchHHHhh--cCCcEEEeeecccc-cccccCCcceeecCCCCCeEEEEeCcC-------C
Q psy3753 786 --NAFYDSVQMRKKCCYIRKVKPLKKAL--IGNKSWITGQRRTQ-SITRSNLVLKEKDIIHNGIIKFNPLYN-------W 853 (928)
Q Consensus 786 --~~~~~~~~~~~~Cc~~~K~~Pl~~~l--~~~~~~i~G~R~~E-S~~R~~~~~~~~d~~~~~~~~~~PI~d-------W 853 (928)
..|+-.....+-|+ . .-+.++. .+.+.+++|.-... ...|-....... .+..-.+.|+.+ +
T Consensus 93 yeg~Y~~g~~l~Rp~i-~---~~l~~~A~~~Gad~IA~G~~~kgnDq~rf~~~~~al---~p~~~IiaPl~d~~~l~~~l 165 (421)
T 1vl2_A 93 YEGRYLLGTAIARPLI-A---KRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAAL---NPNLKVISPWKDPEFLAKFK 165 (421)
T ss_dssp BTTTBCCHHHHHHHHH-H---HHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHH---CTTSEEECGGGCHHHHHHTC
T ss_pred ccCceeCCCcccHHHH-H---HHHHHHHHHcCCCEEEECCeeCCCChHHHHHHHHhc---CCCCeEEcccCchhhccccC
Confidence 01221111123333 1 1122233 27789999986521 111211111111 234456889999 5
Q ss_pred CHHHHHHHHHHCCCCCC
Q psy3753 854 LEKDIWNYINTYNVPYN 870 (928)
Q Consensus 854 t~~DVw~Yi~~~~lp~n 870 (928)
+.+||.+|.+++|||+.
T Consensus 166 sK~Eir~~A~e~Glp~~ 182 (421)
T 1vl2_A 166 GRTDLINYAMEKGIPIK 182 (421)
T ss_dssp --CHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHHHcCCCcc
Confidence 99999999999999986
No 50
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=97.56 E-value=0.00024 Score=76.23 Aligned_cols=170 Identities=8% Similarity=0.029 Sum_probs=94.9
Q ss_pred chhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhc-------CCCceEEEEcCCCChHHHHHHHHHHHHH
Q psy3753 691 PLNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRN-------NFDINIFTLNTGRLHSETLNMLNKIYLT 761 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~-------~~~i~vvf~DTg~efpeT~~~i~~~~~~ 761 (928)
.-+..++.....|+..+++. +.++|++|||.||++++.|+.++ +.+..++.+-..+..++..+.++.+.+.
T Consensus 25 ~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~~~~~~~dA~~~a~~ 104 (285)
T 3dpi_A 25 DARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGAQHDEADARRALAF 104 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSCC---CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 34556667777777777765 57999999999999999887763 2222444443333344566778888999
Q ss_pred cC-CeEEEEecCchhhhHH---HHHhCCCCCccc-hhhhhhhh--hhcccchHHHhhcCCcEEEeee-cccccccccCCc
Q psy3753 762 YK-YKIKVYYPLNSEVNNY---IFKNGINAFYDS-VQMRKKCC--YIRKVKPLKKALIGNKSWITGQ-RRTQSITRSNLV 833 (928)
Q Consensus 762 ~g-~~i~~~~p~~~~~~~~---~~~~G~~~~~~~-~~~~~~Cc--~~~K~~Pl~~~l~~~~~~i~G~-R~~ES~~R~~~~ 833 (928)
+| ++.+++. ....+..+ +...|.. +... ..+...|. ...+..-+..+.......+.|+ .++|....
T Consensus 105 lg~i~~~~i~-i~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~sE~~~G---- 178 (285)
T 3dpi_A 105 VRADETLTVD-VKPAADAMLAALAAGGLA-YLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAAESVMG---- 178 (285)
T ss_dssp HCCSEEEECC-CHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHHHH----
T ss_pred cCCCcEEEEE-ChHHHHHHHHHHHhcCcc-ccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHHhhhCC----
Confidence 98 6766652 21222222 2222321 1110 11122332 2223333333333344556665 33443211
Q ss_pred ceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCC
Q psy3753 834 LKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVP 868 (928)
Q Consensus 834 ~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp 868 (928)
+.... ..+..-++||.+.+..||+...+..++|
T Consensus 179 y~T~~--GD~~~~~~Pl~~l~K~eV~~la~~lg~p 211 (285)
T 3dpi_A 179 FFTKF--GDGGADVLPLAGLTKRRVRALARMLGAD 211 (285)
T ss_dssp HHHCC--CCCCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred ccccc--CCCceeEeeecCCcHHHHHHHHHHcCCC
Confidence 11111 0122248999999999999999999986
No 51
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=97.53 E-value=0.0003 Score=75.36 Aligned_cols=175 Identities=11% Similarity=0.048 Sum_probs=100.7
Q ss_pred chhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhc-----------CCCceEEEEcCCCChHHHHHHHHH
Q psy3753 691 PLNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRN-----------NFDINIFTLNTGRLHSETLNMLNK 757 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~-----------~~~i~vvf~DTg~efpeT~~~i~~ 757 (928)
..+..++...+.|+..+++. +.++|++|||.||++++.|+.++ +.++..+.++.+.. +..+.+++
T Consensus 19 ~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~--~~~~~A~~ 96 (279)
T 3q4g_A 19 DPQFEIERRVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQ--KDEDEAQL 96 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSC--SCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCCh--HHHHHHHH
Confidence 34455566667777777665 57999999999999999997664 23566677775543 34688899
Q ss_pred HHHHcCC-eEEEEecCchhhhHH-------HHHhCCCCCccchhhhhhhh--hhcccchHHHhhcCCcEEEeee-ccccc
Q psy3753 758 IYLTYKY-KIKVYYPLNSEVNNY-------IFKNGINAFYDSVQMRKKCC--YIRKVKPLKKALIGNKSWITGQ-RRTQS 826 (928)
Q Consensus 758 ~~~~~g~-~i~~~~p~~~~~~~~-------~~~~G~~~~~~~~~~~~~Cc--~~~K~~Pl~~~l~~~~~~i~G~-R~~ES 826 (928)
+++.+|+ +.+++. ....+..+ +...+.........+...|. ...++.-+..+.......++|+ .++|.
T Consensus 97 ~a~~lgi~~~~~i~-i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn~sE~ 175 (279)
T 3q4g_A 97 ALSFIRPTHSVSVN-IKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDHSAEN 175 (279)
T ss_dssp HHHHHCCSEEEECC-CHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCHHHH
T ss_pred HHHHhCCCeEEEEE-CHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCccHHhh
Confidence 9999999 666553 22222222 11222110011111222332 2223333333333333456664 44554
Q ss_pred ccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 827 ITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 827 ~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
.... ..... .+.--++||.+.+..+|+...+..++| ..++++
T Consensus 176 ~~Gy----~TkyG--D~~~di~Pl~dl~Kt~Vr~LA~~lgiP-~~i~~K 217 (279)
T 3q4g_A 176 ITGF----YTKFG--DGACDLAPLFGLNKRQVRLLAKTLGAP-EQLVYK 217 (279)
T ss_dssp HHTC----SCTTT--TTCCSBCTTTTCCHHHHHHHHHHTTCC-HHHHTC
T ss_pred hccc----hhhcC--CcccceeecCCCcHHHHHHHHHHhCCc-HHHhcC
Confidence 3221 11111 122349999999999999999999986 334544
No 52
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=97.42 E-value=0.00037 Score=83.07 Aligned_cols=162 Identities=7% Similarity=0.115 Sum_probs=101.8
Q ss_pred hhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhc-C-CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEE
Q psy3753 692 LNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRN-N-FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIK 767 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~-~-~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~ 767 (928)
.+...+.....|+..+++. ++++|++|||.||+|++.|+.+. + .++..++++++...+++.+.++++++++|++.+
T Consensus 306 ~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~~~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~ 385 (590)
T 3n05_A 306 DEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFR 385 (590)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCSSCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCcccEEEEEECCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 4555566666666666654 47999999999999999999986 6 678899999998889999999999999999988
Q ss_pred EEecCchhhhHHHHHhCCCCCccchhhhhhhhhhcccchHHHhh--cCCcEEEeeecccccccccCCcceeecCCCCCeE
Q psy3753 768 VYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKAL--IGNKSWITGQRRTQSITRSNLVLKEKDIIHNGII 845 (928)
Q Consensus 768 ~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l--~~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~ 845 (928)
++.-. ..+..+........+... .....| +..-+..+. .+..++.+| -++|......... .+ ..-
T Consensus 386 ~i~i~-~~~~~~~~~l~~~~~~~~-n~~ar~----r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy~t~~--gd----~~~ 452 (590)
T 3n05_A 386 TVSIE-PMFDAYMASLGLTGLAEE-NLQSRL----RGTTLMAISNQEGHIVLAPG-NKSELAVGYSTLY--GD----SVG 452 (590)
T ss_dssp ECCSH-HHHHHHHHHHCCCTHHHH-HHHHHH----HHHHHHHHHHHHTCEEBCCC-CHHHHHHTCCCSS--CT----TSC
T ss_pred EEECh-HHHHHHHHHhcccchhhh-HHHHHH----HHHHHHHHHHhcCCEEEeCC-CHHHHhcCchhhc--CC----Ccc
Confidence 76432 122222222221111000 001111 111122222 245666778 4455432211110 11 122
Q ss_pred EEEeCcCCCHHHHHHHHHHCC
Q psy3753 846 KFNPLYNWLEKDIWNYINTYN 866 (928)
Q Consensus 846 ~~~PI~dWt~~DVw~Yi~~~~ 866 (928)
-+.||.+++..+|....+..+
T Consensus 453 ~~~Pl~~l~K~eVr~la~~lg 473 (590)
T 3n05_A 453 AYGPIKDVYKTSIFRLAEWRN 473 (590)
T ss_dssp SBCTTTTSCHHHHHHHHHHHH
T ss_pred ceeecCCCcHHHHHHHHHHhC
Confidence 478999999999999988776
No 53
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=97.42 E-value=0.00062 Score=72.98 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=94.5
Q ss_pred chhhhHHHHHHHHHHHHHhcC---CeEEEEcChHHHHHHHHHHHhcC-----------CCceEEEEcCCCChHHHHHHHH
Q psy3753 691 PLNSFVKTVLDALNNIVTDYK---PAVFASSLAAEDMVLTDLILRNN-----------FDINIFTLNTGRLHSETLNMLN 756 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~---~~~vs~SGGKDS~vll~L~~~~~-----------~~i~vvf~DTg~efpeT~~~i~ 756 (928)
..+..++.....|+..+++.+ +++|++|||.||++++.|+.++. .++..++++.+.. +..+.++
T Consensus 18 ~~~~~i~~~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~--~~~~dA~ 95 (275)
T 1wxi_A 18 NAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQ--ADEQDCQ 95 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSC--TTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCc--cCHHHHH
Confidence 345555667778888877655 79999999999999999988763 2566778876543 3578899
Q ss_pred HHHHHcCC-eEEEEecCchhhhHHH---HHhCCCCCccchhhhhhhhh--hcccchHHHhhcCCcEEEeee-cccccccc
Q psy3753 757 KIYLTYKY-KIKVYYPLNSEVNNYI---FKNGINAFYDSVQMRKKCCY--IRKVKPLKKALIGNKSWITGQ-RRTQSITR 829 (928)
Q Consensus 757 ~~~~~~g~-~i~~~~p~~~~~~~~~---~~~G~~~~~~~~~~~~~Cc~--~~K~~Pl~~~l~~~~~~i~G~-R~~ES~~R 829 (928)
++++.+|+ +.+++.-. ..+..+. ...|.+. .....|.- ..+...+..+.......+.|. -.+|....
T Consensus 96 ~va~~lgi~~~~~i~i~-~~~~~~~~~l~~~g~~~-----~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTgn~~E~~~G 169 (275)
T 1wxi_A 96 DAIAFIQPDRVLTVNIK-GAVLASEQALREAGIEL-----SDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEAITG 169 (275)
T ss_dssp HHHHHHCCSEEEECCCH-HHHHHHHHHHHHHTCCC-----CHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHTTT
T ss_pred HHHHHcCCCeEEEEecH-HHHHHHHHHHHhcCCCC-----CCchhhhhhhhHHHHHHHHHHHHCCCEEEECccHHHHccC
Confidence 99999998 66655221 1122222 1123211 11112221 112222222222222233332 22333211
Q ss_pred cCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCC
Q psy3753 830 SNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVP 868 (928)
Q Consensus 830 ~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp 868 (928)
..... ....--+.||.+++..||+...+..|+|
T Consensus 170 ----y~t~~--gd~~~~~~PL~~l~K~eVr~la~~lglp 202 (275)
T 1wxi_A 170 ----FFTKY--GDGGTDINPLYRLNKRQGKQLLAALACP 202 (275)
T ss_dssp ----CSCTT--TTTCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred ----ccccc--CCCccceeeccCCCHHHHHHHHHHhCCc
Confidence 11111 0112248999999999999999999997
No 54
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=97.39 E-value=0.00012 Score=79.20 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=86.0
Q ss_pred CCChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChHHHHHHHHHHhccCCccccCCCceEEEEEecC-CC
Q psy3753 98 LKESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQ-ED 176 (928)
Q Consensus 98 ~e~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~~la~~l~~~~~~~~~~~~LP~Kfki~vsgc~-~~ 176 (928)
.+.+.-..+-|+++||...+ -++++||. |....+|...+++++.+++. .++..+||||=||- |.
T Consensus 249 ~~Ev~va~~ILqslglR~~g------~~~ISCPt---CGRt~~dl~~~~~~ie~~l~------~~~~~lkVAVMGCvVNG 313 (366)
T 3noy_A 249 VVEVETAYEILKSLGLRRRG------VEIVACPT---CGRIEVDLPKVVKEVQEKLS------GVKTPLKVAVMGCVVNA 313 (366)
T ss_dssp HHHHHHHHHHHHHTTSCCSS------CEEEECCC---CTTCCSCHHHHHHHHHHHTT------TCCSCCEEEEESSSHHH
T ss_pred HHHHHHHHHHHHhcCCCcCC------CEEEECCC---CCCccccHHHHHHHHHHHHh------CCCCCCEEEEEcccccC
Confidence 44555667788888996543 47999995 55667899999999998874 46778999999999 88
Q ss_pred cccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHH
Q psy3753 177 RAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQ 239 (928)
Q Consensus 177 c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~ 239 (928)
...+.-+|||+.+... ...||.+|.. + ..++.+++++.+..+++-|.+
T Consensus 314 PGEa~~ADiGiagg~~-----~~~lf~~Ge~---------v-~~v~~~~~~~~l~~~I~~~~~ 361 (366)
T 3noy_A 314 IGEAREADIGLACGRG-----FAWLFKHGKP---------I-KKVDESEMVDELLKEIQNMEK 361 (366)
T ss_dssp HHHTTTCSEEEEECSS-----EEEEEETTEE---------E-EEEESCHHHHHHHHHHHC---
T ss_pred CchhhhCCEeEecCCC-----ceEEEECCEE---------e-eecCHHHHHHHHHHHHHHHHH
Confidence 8889999999999432 5689999853 1 247888999998888876654
No 55
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=97.38 E-value=0.00021 Score=78.60 Aligned_cols=122 Identities=13% Similarity=0.253 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHCCCCCCCcccccceeccCCcccccccccchHHHHHHHHHHhc-------ccCcCCCCCeEEEEecCC-
Q psy3753 387 DNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFS-------KDDQRNIGKISLNISGCI- 458 (928)
Q Consensus 387 ~~~~~~~~~L~~~Gl~~~~~~~~r~v~aC~G~~~C~~a~~dt~~la~~L~~~~~-------~~~~~~~~k~ki~iSGCp- 458 (928)
+++.-.++.|+.+|+-..+. .+++||+-++|.+.++. .+|+++++++. ..+|.. ..+||+|-||.
T Consensus 273 ~EV~va~~ILqslglR~~~~----~iiSCPtCGRt~~d~~~--~la~~v~~~l~~~~~~~~~~~~~~-~~l~VAVMGCvV 345 (406)
T 4g9p_A 273 KEVEVAQEILQALGLRAFAP----EVTSCPGCGRTTSTFFQ--ELAEEVSRRLKERLPEWRARYPGV-EELKVAVMGCVV 345 (406)
T ss_dssp HHHHHHHHHHHHTTSCCCSC----EEEECCCCTTSCHHHHH--HHHHHHHHHHHHHHHHHHHHSTTG-GGCEEEEESSTT
T ss_pred HHHHHHHHHHHHhCCcccCC----CcccCCCCCcCcchHHH--HHHHHHHHHHhhhhhhhhhccCCC-CCCEEEEECCcc
Confidence 47788899999999975543 69999976666654432 36666666554 112221 25899999998
Q ss_pred CCCcccccccEEEEeEeeCCCcEEEEEEcCCCCCCCcccccccCCCCcccHHHHHHHHHHHHHHhcc
Q psy3753 459 NSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLRRCY 525 (928)
Q Consensus 459 n~C~~~~~aDig~ig~~~~~~~g~~i~vGG~~~~~~~~g~~~~~~v~~~e~~~~i~~l~~~y~e~~~ 525 (928)
|+-+.+.-+|||+.+...++.....||..|+.- ..++.+++.+.+.++++-|.+++.
T Consensus 346 NGPGEa~~ADiGi~~~G~G~~~~~~lf~~G~~~----------~~v~~~~iv~~l~~~i~~~~~~~~ 402 (406)
T 4g9p_A 346 NGPGESKHAHIGISLPGAGEEPKAPVYADGKLL----------TILKGEGIAEEFLRLVEDYVKTRF 402 (406)
T ss_dssp THHHHHHHSSEEEECCCTTSCSEEEEEETTEEE----------EEEESSCHHHHHHHHHHHHHHHHT
T ss_pred cCcchhhhcCcCcccCCCCCCCeeeEEECCEEE----------EecCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999997443344456789888721 137889999999999998877643
No 56
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=97.29 E-value=0.00072 Score=72.39 Aligned_cols=169 Identities=13% Similarity=0.013 Sum_probs=95.5
Q ss_pred hhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhcC---------CCceEEEEcCCCChHHHHHHHHHHHH
Q psy3753 692 LNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRNN---------FDINIFTLNTGRLHSETLNMLNKIYL 760 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~~---------~~i~vvf~DTg~efpeT~~~i~~~~~ 760 (928)
.+..++.....|+..+++. +.++|++|||.||++++.|+.+.. .++..++++.+... ..+.++++++
T Consensus 18 ~~~~i~~~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~~~~~--d~~~A~~va~ 95 (271)
T 1kqp_A 18 PKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQ--DEDDAQLALK 95 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSSCT--THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCCCCCC--CHHHHHHHHH
Confidence 3444555667777776654 579999999999999999998764 35666777765443 4788999999
Q ss_pred HcCC-eEEEEecCchhhhHHH---HH-hCCCCCccchhhhhhhhh--hcccchHHHhhcC-CcEEEeeecccccccccCC
Q psy3753 761 TYKY-KIKVYYPLNSEVNNYI---FK-NGINAFYDSVQMRKKCCY--IRKVKPLKKALIG-NKSWITGQRRTQSITRSNL 832 (928)
Q Consensus 761 ~~g~-~i~~~~p~~~~~~~~~---~~-~G~~~~~~~~~~~~~Cc~--~~K~~Pl~~~l~~-~~~~i~G~R~~ES~~R~~~ 832 (928)
.+|+ +.+++.-. ..+..+. .. +|.+. .....|.- ..+...+..+... ...++.+--.+|......
T Consensus 96 ~lgi~~~~~i~i~-~~~~~~~~~l~~~~~~~~-----~~~~~~N~~aR~r~~~l~~~A~~~g~lvl~tgn~~E~~~Gy~- 168 (271)
T 1kqp_A 96 FIKPDKSWKFDIK-STVSAFSDQYQQETGDQL-----TDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVTGFF- 168 (271)
T ss_dssp HHCCSEEEECCCH-HHHHHHHHHHHHHHSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHHTTTCS-
T ss_pred hcCCCeEEEeccH-HHHHHHHHHHhhhcCCCC-----cchhhhhHHHHHHHHHHHHHHHHCCCEEEECccHHHhccCCc-
Confidence 9998 66655321 1122121 11 13211 11112221 1222222222221 123333333455422111
Q ss_pred cceeecCCCCCeEEEEeCcCCCHHHHHHHHHHCCCCCChhhhc
Q psy3753 833 VLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875 (928)
Q Consensus 833 ~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~~lp~npLYd~ 875 (928)
... ....--+.||.+++..||....+..|+|. ..+++
T Consensus 169 ---t~~--gd~~~~~~Pl~~l~K~eVr~la~~lglp~-~i~~k 205 (271)
T 1kqp_A 169 ---TKY--GDGGADLLPLTGLTKRQGRTLLKELGAPE-RLYLK 205 (271)
T ss_dssp ---CTT--TTTCCSBCTTTTCCHHHHHHHHHHTTCCT-HHHHS
T ss_pred ---ccc--ccccccccccccCCHHHHHHHHHHcCCCH-hhccC
Confidence 110 01122389999999999999999999973 34443
No 57
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=96.95 E-value=0.0013 Score=68.64 Aligned_cols=127 Identities=11% Similarity=0.118 Sum_probs=79.5
Q ss_pred CeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChH------HHHHHHHHHHHHcCCeEEEEecCchhhhHHHHHhCC
Q psy3753 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHS------ETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGI 785 (928)
Q Consensus 712 ~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efp------eT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~~G~ 785 (928)
++++++||||||++.++++.+.+.++..++...+.... .-.+.++.+++.+|+++.++.-....
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~---------- 75 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEK---------- 75 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--------------
T ss_pred EEEEEecCcHHHHHHHHHHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCc----------
Confidence 58999999999999999999998877766554433211 11356788899999998877432110
Q ss_pred CCCccchhhhhhhhhhcccchHHHhhc--CCcEEEeeecccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHH
Q psy3753 786 NAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYIN 863 (928)
Q Consensus 786 ~~~~~~~~~~~~Cc~~~K~~Pl~~~l~--~~~~~i~G~R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~ 863 (928)
...++.|.++++ +...+++|--..|. +|........ .-+..-+.||.....+++..-+.
T Consensus 76 ---------------~~e~e~l~~~l~~~~i~~vv~Gdi~s~y-qr~r~e~vc~---~~gl~~~~PLW~~d~~~Ll~e~i 136 (237)
T 3rjz_A 76 ---------------EKEVEDLKRVLSGLKIQGIVAGALASKY-QRKRIEKVAK---ELGLEVYTPAWGRDAKEYMRELL 136 (237)
T ss_dssp -----------------CHHHHHHHHTTSCCSEEECC---CCS-HHHHHHHHHH---HTTCEEECSSSSCCHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHhcCCcEEEECCcchHH-HHHHHHHHHH---HcCCEEEccccCCCHHHHHHHHH
Confidence 011234555554 56778888776555 3333222111 12566799999999988887776
Q ss_pred HCCC
Q psy3753 864 TYNV 867 (928)
Q Consensus 864 ~~~l 867 (928)
..|+
T Consensus 137 ~~G~ 140 (237)
T 3rjz_A 137 NLGF 140 (237)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 6554
No 58
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=96.21 E-value=0.0084 Score=72.33 Aligned_cols=76 Identities=13% Similarity=-0.007 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHHHhc----C---CCceEEEEcCCCChHHHHHHHHHHHHHcCC
Q psy3753 694 SFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLILRN----N---FDINIFTLNTGRLHSETLNMLNKIYLTYKY 764 (928)
Q Consensus 694 ~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~~~~----~---~~i~vvf~DTg~efpeT~~~i~~~~~~~g~ 764 (928)
...+.....|++.+++. ++++|++|||.||++++.|+.++ + .++..+++++....+++.+.++++++.+|+
T Consensus 343 ~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~~~~~~~~~~A~~la~~lgi 422 (680)
T 3sdb_A 343 EAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFATGEHTKNNAIKLARALGV 422 (680)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC--------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 33444445566666655 46999999999999988777664 2 467889999877778899999999999999
Q ss_pred eEEEE
Q psy3753 765 KIKVY 769 (928)
Q Consensus 765 ~i~~~ 769 (928)
+.+++
T Consensus 423 ~~~~i 427 (680)
T 3sdb_A 423 TFSEI 427 (680)
T ss_dssp EEEEC
T ss_pred CEEEE
Confidence 97766
No 59
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=96.10 E-value=0.0076 Score=65.55 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=76.9
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHc-------CCeEEEEecCchhhhHHHHHh
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTY-------KYKIKVYYPLNSEVNNYIFKN 783 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~-------g~~i~~~~p~~~~~~~~~~~~ 783 (928)
+++++.+|| .||+|+++|+.+.+.++..+|++++. ...+.++++++.+ +++++++.+ +.+..
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~G~~v~~v~~~~~~---~~~~~a~~~a~~l~~~~~~~~i~~~vv~~----~~~~~--- 248 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKRGVEVIPVYIGKDD---KNLEKVRSLWNLLKRYSYGSKGFLVVAES----FDRVL--- 248 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHBTCEEEEEEESCSS---HHHHHHHHHHHHHHTTCTTSCCCCEEESS----HHHHH---
T ss_pred CcEEEEEeC-CcHHHHHHHHHhCCCeEEEEEEEECH---HHHHHHHHHHHHHhhhccCCCCcEEEeCC----CHHHH---
Confidence 468999999 99999999999999999999999543 3456666676666 455555421 10000
Q ss_pred CCCCCccchhhhhhhhhhcccchHHHhh--cCCcEEEeeeccccc-ccccCCcceeecCCCCCeEEEEeCcCCCHHHHHH
Q psy3753 784 GINAFYDSVQMRKKCCYIRKVKPLKKAL--IGNKSWITGQRRTQS-ITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWN 860 (928)
Q Consensus 784 G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l--~~~~~~i~G~R~~ES-~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~ 860 (928)
++. .+.+.++||.-..+- .+...+...... .....+.||.+|+.+||.+
T Consensus 249 -------------------------~~A~~~ga~~I~tG~~~~~~~~qt~~l~~~~~~---~~~~vl~PL~~~~K~eI~~ 300 (307)
T 1vbk_A 249 -------------------------KLIRDFGVKGVIKGLRPNDLNSEVSEITEDFKM---FPVPVYYPLIALPEEYIKS 300 (307)
T ss_dssp -------------------------HHHHHHTCCEEECCCCGGGCCTTCHHHHHHHHH---CSSCEECHHHHSCHHHHHH
T ss_pred -------------------------HHHHHcCCCEEEECcccchhccccHHHhhhccC---cCCeEEEccCCCCHHHHHH
Confidence 111 256788899765432 111111111111 1233689999999999999
Q ss_pred HHHHCCC
Q psy3753 861 YINTYNV 867 (928)
Q Consensus 861 Yi~~~~l 867 (928)
+-++.|+
T Consensus 301 ~a~~iGl 307 (307)
T 1vbk_A 301 VKERLGL 307 (307)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9888764
No 60
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=95.99 E-value=0.014 Score=69.89 Aligned_cols=170 Identities=9% Similarity=-0.024 Sum_probs=95.1
Q ss_pred hhhhHHHHHHHHHHHHHhc--CCeEEEEcChHHHHHHHHHH--------HhcCCC-------------------------
Q psy3753 692 LNSFVKTVLDALNNIVTDY--KPAVFASSLAAEDMVLTDLI--------LRNNFD------------------------- 736 (928)
Q Consensus 692 l~~~~~~a~~~I~~~~~~~--~~~~vs~SGGKDS~vll~L~--------~~~~~~------------------------- 736 (928)
.++..+....-|++.+++. ++++|+.|||-||+|++.|+ ...+.+
T Consensus 283 ~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T 3ilv_A 283 EFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQ 362 (634)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccc
Confidence 3444444455555555554 47999999999999888883 334543
Q ss_pred --------ceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEEecCchhhhHHHHH----hCCCCCcc-chhhhhhhhhhcc
Q psy3753 737 --------INIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFK----NGINAFYD-SVQMRKKCCYIRK 803 (928)
Q Consensus 737 --------i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~~p~~~~~~~~~~~----~G~~~~~~-~~~~~~~Cc~~~K 803 (928)
+..+|+.+...-+++.+-++++++.+|++..++.-. ..+..+... .|...-+. ..-....++...+
T Consensus 363 ~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~-~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R 441 (634)
T 3ilv_A 363 AKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVD-EEIEQYKATIENVIERPLTWEKDDITLQNIQARGR 441 (634)
T ss_dssp HHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECH-HHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTT
T ss_pred hhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccH-HHHHHHHHHHHHhhCCCcccccCcchhhhhhHHHH
Confidence 668898887778899999999999999987776432 222222221 23211111 1001122222233
Q ss_pred cchHHHhhcCCcEEEeee-cccccccccCCcceeecCCCCCeEEEEeCcCCCHHHHHHHHHHC----CCC
Q psy3753 804 VKPLKKALIGNKSWITGQ-RRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTY----NVP 868 (928)
Q Consensus 804 ~~Pl~~~l~~~~~~i~G~-R~~ES~~R~~~~~~~~d~~~~~~~~~~PI~dWt~~DVw~Yi~~~----~lp 868 (928)
..-+....+.....++|. -++|+..-.... ..| ..--++||.+.+..+|....+.. ++|
T Consensus 442 ~~~l~~~A~~~g~lvlgTgnksE~~~Gy~T~--ygD----~~~~~~Pl~~l~KteVr~la~~l~~~~glp 505 (634)
T 3ilv_A 442 APIIWMLTNVKQALLITTSNRSEGDVGYATM--DGD----TAGGIAPIAGVDKDFIRSWLRWAEKNRNQH 505 (634)
T ss_dssp HHHHHHHHHHHTCEEBCCCCHHHHHTTCSCT--TTT----TCSSBBTTTTSCHHHHHHHHHHHHHHSCCG
T ss_pred HHHHHHHHHhcCCEEeccCchhhHhhCCccc--cCC----cccCCcccCCCcHHHHHHHHHHHHHcCCCc
Confidence 222332222111223332 233432211111 111 11137999999999999988877 787
No 61
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=94.44 E-value=0.083 Score=61.40 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=59.2
Q ss_pred chhhhHHHHHHHHHHHHHhc----CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeE
Q psy3753 691 PLNSFVKTVLDALNNIVTDY----KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKI 766 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~----~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i 766 (928)
+.++.++...+.++++++.. .++.+.+|||.||++++.++.+...++..+.+... ..+| .++++++++++|++.
T Consensus 215 ~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~~~~~~~~t~~~~-~~~E-~~~A~~vA~~lg~~h 292 (503)
T 1q15_A 215 PREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRHFKKLNTYSIGTE-LSNE-FEFSQQVADALGTHH 292 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTTCSEEEEEEEEET-TBCC-HHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHhCCCcEEEEEeCC-CccH-HHHHHHHHHHhCCce
Confidence 34555556666666655532 47889999999999999999988766766666543 2233 478899999999998
Q ss_pred EEEecCch
Q psy3753 767 KVYYPLNS 774 (928)
Q Consensus 767 ~~~~p~~~ 774 (928)
+++.....
T Consensus 293 ~~i~~~~~ 300 (503)
T 1q15_A 293 QMKILSET 300 (503)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 88766554
No 62
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=94.38 E-value=0.088 Score=61.34 Aligned_cols=130 Identities=13% Similarity=0.094 Sum_probs=80.2
Q ss_pred chhhhHHHHHHHHHHHHHhc----CCeEEEEcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHHHHHcCCeE
Q psy3753 691 PLNSFVKTVLDALNNIVTDY----KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKI 766 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~----~~~~vs~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i 766 (928)
..+..++...+.++++++.. .++.+.+|||.||++++.|+.+...++..+.+.... .+| .++++++++++|++.
T Consensus 218 ~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~~~v~tfti~~~~-~~E-~~~A~~vA~~lg~~h 295 (513)
T 1jgt_A 218 PEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTDT-SNE-FREARAVVDHLRTRH 295 (513)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHHSSCEEEEEECSS-CCC-HHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhCCCceEEEcCCCC-CCH-HHHHHHHHHHhCCCc
Confidence 34555666666666666542 378999999999999999999877777777776542 334 478999999999998
Q ss_pred EEEecCchhhh----HHHHHhCCCCCccchhhhhhhhhhcccchHHHhh-cCCcEEEeeecccccccc
Q psy3753 767 KVYYPLNSEVN----NYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKAL-IGNKSWITGQRRTQSITR 829 (928)
Q Consensus 767 ~~~~p~~~~~~----~~~~~~G~~~~~~~~~~~~~Cc~~~K~~Pl~~~l-~~~~~~i~G~R~~ES~~R 829 (928)
+.+......+. +.+.....+ .+. ..|+ .....-+.+.. .+.+++++|.-+||-...
T Consensus 296 ~~i~i~~~~~~~~l~~~~~~~~~~---~p~---~~~~-~~~~~~l~~~a~~g~~VvltG~GaDElfgG 356 (513)
T 1jgt_A 296 REITIPTTELLAQLPYAVWASESV---DPD---IIEY-LLPLTALYRALDGPERRILTGYGADIPLGG 356 (513)
T ss_dssp EEEECCHHHHHTTHHHHHHHHCCC---CHH---HHHH-HHHHHHHHHHCCSSCCEEECCTTTHHHHTT
T ss_pred EEEECCHHHHHHHHHHHHHHhCCC---Ccc---cchh-HHHHHHHHHHHHcCCCEEEeCCChhhcccC
Confidence 88766543221 112211110 010 0010 01111122222 367899999988886543
No 63
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=93.79 E-value=0.051 Score=59.91 Aligned_cols=122 Identities=18% Similarity=0.148 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHcCCccccccCCcccceEeCCCCccCcccccChH-HHHHHHHHHhccC-Ccc-ccCC--CceEEEEEecC
Q psy3753 100 ESPDILENLASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTR-PYAEILRQWSTFH-PEF-AYLP--RKFKISISGSQ 174 (928)
Q Consensus 100 ~~~~~~~~L~~~GL~~~~~~gd~vRni~~cp~ag~~~~~~~D~~-~la~~l~~~~~~~-~~~-~~LP--~Kfki~vsgc~ 174 (928)
.+.-..+-|+++||...+ -++++||..|.+ .+|.. .+|+++.+.+... +.. ...| ..+||+|=||-
T Consensus 274 EV~va~~ILqslglR~~~------~~iiSCPtCGRt---~~d~~~~la~~v~~~l~~~~~~~~~~~~~~~~l~VAVMGCv 344 (406)
T 4g9p_A 274 EVEVAQEILQALGLRAFA------PEVTSCPGCGRT---TSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCV 344 (406)
T ss_dssp HHHHHHHHHHHTTSCCCS------CEEEECCCCTTS---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCEEEEESST
T ss_pred HHHHHHHHHHHhCCcccC------CCcccCCCCCcC---cchHHHHHHHHHHHHHhhhhhhhhhccCCCCCCEEEEECCc
Confidence 456667788899997543 479999976654 45543 4777776665321 110 1223 35999999997
Q ss_pred -CCcccccccceEEEEEEecCCeeeEEEEEcccCCCCCcccccccccCChHHHHHHHHHHHHHHHHhc
Q psy3753 175 -EDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYG 241 (928)
Q Consensus 175 -~~c~~~~~~Dig~ia~~~~~~~~gf~v~vGG~~g~~p~~g~~l~~~v~~~e~~~~~~ai~~~~~~~g 241 (928)
|+-..+.-+|||+.+... ++...-.||..|.. + ..++.+++++.+..+++-|.+..
T Consensus 345 VNGPGEa~~ADiGi~~~G~-G~~~~~~lf~~G~~---------~-~~v~~~~iv~~l~~~i~~~~~~~ 401 (406)
T 4g9p_A 345 VNGPGESKHAHIGISLPGA-GEEPKAPVYADGKL---------L-TILKGEGIAEEFLRLVEDYVKTR 401 (406)
T ss_dssp TTHHHHHHHSSEEEECCCT-TSCSEEEEEETTEE---------E-EEEESSCHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhcCcCcccCCC-CCCCeeeEEECCEE---------E-EecCHHHHHHHHHHHHHHHHHHh
Confidence 667778899999987443 12223468877752 1 34688889999988888777644
No 64
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=93.22 E-value=0.36 Score=56.66 Aligned_cols=77 Identities=9% Similarity=0.025 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHh----cCCeEEEEcChHHHHHHHHHHHhcCCC--------------ceEEEEcCCCChHHHHHHHHH
Q psy3753 696 VKTVLDALNNIVTD----YKPAVFASSLAAEDMVLTDLILRNNFD--------------INIFTLNTGRLHSETLNMLNK 757 (928)
Q Consensus 696 ~~~a~~~I~~~~~~----~~~~~vs~SGGKDS~vll~L~~~~~~~--------------i~vvf~DTg~efpeT~~~i~~ 757 (928)
++...+.+..+++. ..++.+.+|||.||++++.++.+...+ +..+.+.... .+| .+++++
T Consensus 208 ~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~~-~~E-~~~A~~ 285 (553)
T 1ct9_A 208 KNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPG-SPD-LKAAQE 285 (553)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEESTT-CHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCCC-CcH-HHHHHH
Confidence 34444444444443 248899999999999999999886543 5666664432 355 588999
Q ss_pred HHHHcCCeEEEEecCch
Q psy3753 758 IYLTYKYKIKVYYPLNS 774 (928)
Q Consensus 758 ~~~~~g~~i~~~~p~~~ 774 (928)
+++++|.+.+.+.....
T Consensus 286 vA~~lg~~h~~i~~~~~ 302 (553)
T 1ct9_A 286 VANHLGTVHHEIHFTVQ 302 (553)
T ss_dssp HHHHHTCEEEEEECCHH
T ss_pred HHHHhCCCCEEEECCHH
Confidence 99999999887765543
No 65
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=86.39 E-value=1.5 Score=51.55 Aligned_cols=59 Identities=3% Similarity=-0.053 Sum_probs=51.8
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcC--CCceEEEEcCCCChHHHHHHHHHHHHHcCCeEEEE
Q psy3753 711 KPAVFASSLAAEDMVLTDLILRNN--FDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVY 769 (928)
Q Consensus 711 ~~~~vs~SGGKDS~vll~L~~~~~--~~i~vvf~DTg~efpeT~~~i~~~~~~~g~~i~~~ 769 (928)
+.+++..|||-||++++-|+.++. .+|..+++-+-....+|++-.+.+++.+|+....+
T Consensus 301 ~~~vlglSGGiDSal~~~la~~alg~~~v~~v~mp~~~ts~~t~~~a~~la~~lg~~~~~i 361 (565)
T 4f4h_A 301 PGAIIGLSGGVDSALVLAVAVDALGAERVRAVMMPSRYTAGISTTDAADMARRVGVRYDEI 361 (565)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCTTCCHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcEEEecCCCccHHHHHHHHHHHhCCccEEEEeccccccccchHHHHHHHHHHhCCceeee
Confidence 579999999999999999987753 45778888888899999999999999999988765
No 66
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=58.34 E-value=15 Score=37.60 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=63.7
Q ss_pred HHhhhcCCCCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEE--ecCcccCCcchh--------HHHHHHHhcCCceeEe
Q psy3753 570 KYLKFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAI--NFIKFTDGRGYS--------IAYNLRMKFNYTGELR 639 (928)
Q Consensus 570 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~d~r~~~--------~~~~~r~~~~~~g~~~ 639 (928)
+-....++...++||.+.|.+.++.+..+| +.+.+|-+ -.|.|. |.-|- .+|.++...||.=.|-
T Consensus 97 ~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l----~~~D~VlvmsV~pGfg-gQ~f~~~~l~kI~~lr~~~~~~~~~~~I~ 171 (231)
T 3ctl_A 97 RLIDEIRRHDMKVGLILNPETPVEAMKYYI----HKADKITVMTVDPGFA-GQPFIPEMLDKLAELKAWREREGLEYEIE 171 (231)
T ss_dssp HHHHHHHHTTCEEEEEECTTCCGGGGTTTG----GGCSEEEEESSCTTCS-SCCCCTTHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHcCCeEEEEEECCCcHHHHHHHH----hcCCEEEEeeeccCcC-CccccHHHHHHHHHHHHHHhccCCCceEE
Confidence 333344445678999999999988887666 45555543 567885 66552 3444443346666788
Q ss_pred eccccchhhHHHHHHcCCcceeec
Q psy3753 640 AIGDVLQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 640 a~~~~~~d~~~~~~~~g~~~~~~~ 663 (928)
+.|.+=.+-...+...|-|.+..-
T Consensus 172 VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 172 VDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp EESCCSTTTHHHHHHHTCCEEEEC
T ss_pred EECCcCHHHHHHHHHcCCCEEEEc
Confidence 899999999999999999998886
No 67
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=43.25 E-value=28 Score=35.49 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=61.3
Q ss_pred cCCCCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEE--ecCcccCCcchhH-----HHHHHHhcCCceeEeeccccchh
Q psy3753 575 NSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAI--NFIKFTDGRGYSI-----AYNLRMKFNYTGELRAIGDVLQD 647 (928)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~d~r~~~~-----~~~~r~~~~~~g~~~a~~~~~~d 647 (928)
.+....++||.+.|.++++.+...+ +.+.+|-+ -.|.| +|.-|+- .+.||++ +..=.|-+.|.+=++
T Consensus 108 i~~~G~k~gval~p~t~~e~l~~~l----~~~D~Vl~msv~pGf-~Gq~f~~~~l~ki~~lr~~-~~~~~I~VdGGI~~~ 181 (228)
T 3ovp_A 108 IRENGMKVGLAIKPGTSVEYLAPWA----NQIDMALVMTVEPGF-GGQKFMEDMMPKVHWLRTQ-FPSLDIEVDGGVGPD 181 (228)
T ss_dssp HHHTTCEEEEEECTTSCGGGTGGGG----GGCSEEEEESSCTTT-CSCCCCGGGHHHHHHHHHH-CTTCEEEEESSCSTT
T ss_pred HHHcCCCEEEEEcCCCCHHHHHHHh----ccCCeEEEeeecCCC-CCcccCHHHHHHHHHHHHh-cCCCCEEEeCCcCHH
Confidence 3334568999999999999887766 33444432 26888 7766532 7788875 444568788999999
Q ss_pred hHHHHHHcCCcceeec
Q psy3753 648 QLFYMKRVGFNSFVIR 663 (928)
Q Consensus 648 ~~~~~~~~g~~~~~~~ 663 (928)
....+.+.|-|.+..-
T Consensus 182 t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 182 TVHKCAEAGANMIVSG 197 (228)
T ss_dssp THHHHHHHTCCEEEES
T ss_pred HHHHHHHcCCCEEEEe
Confidence 9999999999988774
No 68
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=39.30 E-value=34 Score=35.36 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=60.6
Q ss_pred hhhcCCCCCceeEEeCCCcCHHHHHHHHhcCCCCceEEEE--ecCcccCCcch-----hHHHHHHHh---cCCceeEeec
Q psy3753 572 LKFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAI--NFIKFTDGRGY-----SIAYNLRMK---FNYTGELRAI 641 (928)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~d~r~~-----~~~~~~r~~---~~~~g~~~a~ 641 (928)
+...+....++||.+.|.++++.+..+| +.+.+|-+ -.|.| +|.-| .-.+.||+. .|+.=.|-+.
T Consensus 127 i~~ir~~G~k~Gvalnp~Tp~e~l~~~l----~~vD~VlvMsV~PGf-gGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VD 201 (246)
T 3inp_A 127 LQLIKSFGIQAGLALNPATGIDCLKYVE----SNIDRVLIMSVNPGF-GGQKFIPAMLDKAKEISKWISSTDRDILLEID 201 (246)
T ss_dssp HHHHHTTTSEEEEEECTTCCSGGGTTTG----GGCSEEEEECSCTTC---CCCCTTHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHH----hcCCEEEEeeecCCC-CCcccchHHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 3334444678999999999999887776 34444433 36888 56544 224555543 3666678889
Q ss_pred cccchhhHHHHHHcCCcceeec
Q psy3753 642 GDVLQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 642 ~~~~~d~~~~~~~~g~~~~~~~ 663 (928)
|.+=.+....+.+.|-|.+..-
T Consensus 202 GGI~~~ti~~~~~aGAD~~V~G 223 (246)
T 3inp_A 202 GGVNPYNIAEIAVCGVNAFVAG 223 (246)
T ss_dssp SSCCTTTHHHHHTTTCCEEEES
T ss_pred CCcCHHHHHHHHHcCCCEEEEe
Confidence 9999999999999999988774
No 69
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=38.69 E-value=86 Score=28.66 Aligned_cols=103 Identities=7% Similarity=0.020 Sum_probs=58.1
Q ss_pred chhhHHHHHHcCCcceee-cCC-CChHHHhccCCcCccccccccccCCchhhhHHHHHHHHHHHHHhcCCeEEEEcChHH
Q psy3753 645 LQDQLFYMKRVGFNSFVI-RHD-KNINSALHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPAVFASSLAAE 722 (928)
Q Consensus 645 ~~d~~~~~~~~g~~~~~~-~~~-~~~~~~l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKD 722 (928)
.++...++.+.|++.+.- .+. +..... .+.+...+-|-.+...|-......+.+.|+...+..++++|=++.|++
T Consensus 25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~---~~~~~~~~~~~~d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~aG~~ 101 (151)
T 2img_A 25 LPAHYQFLLDLGVRHLVSLTERGPPHSDS---CPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFG 101 (151)
T ss_dssp SHHHHHHHHHTTEEEEEECSSSCCTTGGG---CTTSEEEECCCCTTCCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cHHHHHHHHHCCCCEEEECCCCCCCCHHH---HhhCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEECCCCCC
Confidence 456667777777766532 222 111111 222333333433444444455677788888877776789999999998
Q ss_pred HHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHH
Q psy3753 723 DMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKI 758 (928)
Q Consensus 723 S~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~ 758 (928)
=+.++-.+.-... .|....+.+++++..
T Consensus 102 Rsg~~~~~~l~~~--------~~~~~~~a~~~~r~~ 129 (151)
T 2img_A 102 RTGTMLACYLVKE--------RGLAAGDAIAEIRRL 129 (151)
T ss_dssp HHHHHHHHHHHHH--------HCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--------hCcCHHHHHHHHHHH
Confidence 7655433322110 355677777776653
No 70
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=34.97 E-value=70 Score=32.50 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=61.5
Q ss_pred hcCCCCCceeEEeCCCcCHHHHHHHHhcCCC--CceEE---EEecCcccCCcch-----hHHHHHHHhcCCceeEeeccc
Q psy3753 574 FNSNNNLNIGIWINSDEYSEELKCVLKKNPK--QFKVI---AINFIKFTDGRGY-----SIAYNLRMKFNYTGELRAIGD 643 (928)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~---~~~~~~~~d~r~~-----~~~~~~r~~~~~~g~~~a~~~ 643 (928)
..+....++||.+.|.+.++.+...| + .+.+| .+ .|.|. |.-| .-.+.||+..+ .=.|-+.|.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l----~~g~~D~VlvmsV-~pGf~-gq~f~~~~l~ki~~lr~~~~-~~~I~VdGG 181 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPIL----DTNLINTVLVMTV-EPGFG-GQSFMHDMMGKVSFLRKKYK-NLNIQVDGG 181 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHH----TTTCCSEEEEESS-CTTCS-SCCCCGGGHHHHHHHHHHCT-TCEEEEESS
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHh----hcCCcCEEEEeee-ccCCC-CcccchHHHHHHHHHHHhcc-CCeEEEECC
Confidence 44455678999999999999888877 3 45555 44 57885 6554 34577887664 335777899
Q ss_pred cchhhHHHHHHcCCcceeec
Q psy3753 644 VLQDQLFYMKRVGFNSFVIR 663 (928)
Q Consensus 644 ~~~d~~~~~~~~g~~~~~~~ 663 (928)
+=.+-...+...|-|.+..-
T Consensus 182 I~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 182 LNIETTEISASHGANIIVAG 201 (227)
T ss_dssp CCHHHHHHHHHHTCCEEEES
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 99999999999999988764
No 71
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=34.21 E-value=1.1e+02 Score=28.04 Aligned_cols=100 Identities=7% Similarity=0.063 Sum_probs=56.2
Q ss_pred hhHHHHHHcCCcceeecCCCChHHHhccCCcCccccccccccCCchhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHH
Q psy3753 647 DQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVL 726 (928)
Q Consensus 647 d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vl 726 (928)
+....+++.|++++.-=....... ......+...+-|-.+...|....+..+.+.|+...++.++++|=++.|+|-+.+
T Consensus 26 ~~~~~L~~~gi~~Vi~l~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~ 104 (150)
T 4erc_A 26 AHYQFLLDLGVRHLVSLTERGPPH-SDSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGT 104 (150)
T ss_dssp HHHHHHHHTTEEEEEECSSSCCTT-GGGCTTSEEEECCCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHH
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCc-ccccCCceEEEEecCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 344555556665543222211110 0111234444444445445555667888888888877777899999999986643
Q ss_pred H---HHHHhcCCCceEEEEcCCCChHHHHHHHHHH
Q psy3753 727 T---DLILRNNFDINIFTLNTGRLHSETLNMLNKI 758 (928)
Q Consensus 727 l---~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~ 758 (928)
+ .|+... |....+.+++++..
T Consensus 105 ~~a~~l~~~~-----------~~~~~~a~~~vr~~ 128 (150)
T 4erc_A 105 MLACYLVKER-----------GLAAGDAIAEIRRL 128 (150)
T ss_dssp HHHHHHHHHH-----------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----------CCCHHHHHHHHHHH
Confidence 3 333322 55667777776543
No 72
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=30.86 E-value=1.4e+02 Score=27.80 Aligned_cols=102 Identities=6% Similarity=-0.033 Sum_probs=55.0
Q ss_pred hhHHHHHHcCCcceee-cCC-CChHHHhccCCcCccccccccccCCchhhhHHHHHHHHHHHHHh--------cCCeEEE
Q psy3753 647 DQLFYMKRVGFNSFVI-RHD-KNINSALHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTD--------YKPAVFA 716 (928)
Q Consensus 647 d~~~~~~~~g~~~~~~-~~~-~~~~~~l~~~~~~~~~yqps~~~~~~l~~~~~~a~~~I~~~~~~--------~~~~~vs 716 (928)
|-..++.+.|++.+.- .+. .++..... ..+....=|..+...|-...+....+.|+.+.+. .++++|=
T Consensus 38 ~~~~~l~~~gi~~Iv~l~~~~~~~~~~~~--~~i~~~~~p~~d~~~p~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vlVH 115 (167)
T 3s4o_A 38 TYIKELQHRGVRHLVRVCGPTYDATLVKS--RGIDVHSWPFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTIGVH 115 (167)
T ss_dssp HHHHHHHTTTEEEEEECSCCCSCTHHHHT--TTCEEEECCCCTTCCCCHHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEE
T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHH--CCCeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHhhccccCCCcEEEE
Confidence 4445666777666642 111 11221111 1233333333344444445556666777766654 4688999
Q ss_pred EcChHHHHHHHHHHHhcCCCceEEEEcCCCChHHHHHHHHHH
Q psy3753 717 SSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKI 758 (928)
Q Consensus 717 ~SGGKDS~vll~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~ 758 (928)
++.|++-|.++-.+.-.. ..+....+.++++++.
T Consensus 116 C~aG~~RTg~~~a~~L~~--------~~~~~~~~a~~~vr~~ 149 (167)
T 3s4o_A 116 CVAGLGRAPILVALALVE--------YGNVSALDAIALIREK 149 (167)
T ss_dssp CSSSSSHHHHHHHHHHHH--------TTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH--------hCCCCHHHHHHHHHHH
Confidence 999998875544433211 1256777777777654
No 73
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.62 E-value=85 Score=27.72 Aligned_cols=80 Identities=8% Similarity=-0.022 Sum_probs=44.1
Q ss_pred CHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHH
Q psy3753 591 YSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINS 670 (928)
Q Consensus 591 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~ 670 (928)
+.++....+.....++-++.+..| |.-|+.+++.||+...-.--|--++..-.+....+.+.|.+.+-. .+.++..
T Consensus 39 ~~~~a~~~l~~~~~dlvi~d~~l~---~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-kP~~~~~ 114 (137)
T 3hdg_A 39 DGEEGERLFGLHAPDVIITDIRMP---KLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLP-KPIEPGR 114 (137)
T ss_dssp SHHHHHHHHHHHCCSEEEECSSCS---SSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECC-SSCCHHH
T ss_pred CHHHHHHHHhccCCCEEEEeCCCC---CCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEc-CCCCHHH
Confidence 444444444333345555555555 567999999999863222222222333334555677888887754 3344444
Q ss_pred Hhcc
Q psy3753 671 ALHG 674 (928)
Q Consensus 671 ~l~~ 674 (928)
..+.
T Consensus 115 l~~~ 118 (137)
T 3hdg_A 115 LMET 118 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 74
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=23.25 E-value=32 Score=30.13 Aligned_cols=22 Identities=14% Similarity=0.448 Sum_probs=19.4
Q ss_pred EEeCcCCCHHHHHHHHHHCCCC
Q psy3753 847 FNPLYNWLEKDIWNYINTYNVP 868 (928)
Q Consensus 847 ~~PI~dWt~~DVw~Yi~~~~lp 868 (928)
-.|+..||.+||..|++..++.
T Consensus 14 ~~~v~~Ws~edV~~WL~~~Gl~ 35 (97)
T 2d8c_A 14 MKEVVYWSPKKVADWLLENAMP 35 (97)
T ss_dssp CSCCSSCCTTHHHHHHHHTTCT
T ss_pred CCchhhCCHHHHHHHHHHcCCH
Confidence 4688999999999999998863
No 75
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.47 E-value=1.4e+02 Score=25.93 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=41.5
Q ss_pred CcCHHHHHHHHhcCCCCceEEEEecCcccCCcchhHHHHHHHhcCCceeEeeccccchhhHHHHHHcCCcceeecCC
Q psy3753 589 DEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHD 665 (928)
Q Consensus 589 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~r~~~~~~~~r~~~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~ 665 (928)
..+.++....+.....++-++.+..| +.-|+.+++.||.+....--+--+++--.+....+.+.|.+.+-..+-
T Consensus 37 ~~~~~~a~~~l~~~~~dlvi~d~~l~---~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~ 110 (130)
T 3eod_A 37 AADGVDALELLGGFTPDLMICDIAMP---RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 (130)
T ss_dssp ESCHHHHHHHHTTCCCSEEEECCC--------CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC
T ss_pred eCCHHHHHHHHhcCCCCEEEEecCCC---CCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCC
Confidence 34555555555444345555555554 566999999999863333333333444445556778899888866544
No 76
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=22.28 E-value=1.5e+02 Score=26.74 Aligned_cols=80 Identities=9% Similarity=0.114 Sum_probs=48.0
Q ss_pred CceEEEEecCcccCCcchhHHHHHHHh--cCCceeEeeccccchhhHHHHHHcCCcceeecCCCChHHHhccCCcCcccc
Q psy3753 605 QFKVIAINFIKFTDGRGYSIAYNLRMK--FNYTGELRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKY 682 (928)
Q Consensus 605 ~~~~~~~~~~~~~d~r~~~~~~~~r~~--~~~~g~~~a~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~y 682 (928)
...+|-++. ...|.-|+.+++.||.. ..-.--|--++..-.+....+.+.|.+.+-.. +.++....+.+..+..+|
T Consensus 59 ~~dliilD~-~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~K-P~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 59 RAQLVLLDL-NLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITK-PVNYENFANAIRQLGLFF 136 (152)
T ss_dssp CBEEEEECS-BCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEEC-CSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeC-CCCHHHHHHHHHHHHHHH
Confidence 445555554 33466799999999983 22222333344444455567888999888654 455666666665555555
Q ss_pred cccc
Q psy3753 683 QTSA 686 (928)
Q Consensus 683 qps~ 686 (928)
++..
T Consensus 137 ~~~~ 140 (152)
T 3heb_A 137 SVMQ 140 (152)
T ss_dssp TTSC
T ss_pred HHcC
Confidence 5544
No 77
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=20.44 E-value=3.8e+02 Score=24.27 Aligned_cols=57 Identities=5% Similarity=0.060 Sum_probs=40.6
Q ss_pred chhhhHHHHHHHHHHHHHhcCCeEEEEcChHHHHHHH---HHHHhcCCCceEEEEcCCCChHHHHHHHHHH
Q psy3753 691 PLNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLT---DLILRNNFDINIFTLNTGRLHSETLNMLNKI 758 (928)
Q Consensus 691 ~l~~~~~~a~~~I~~~~~~~~~~~vs~SGGKDS~vll---~L~~~~~~~i~vvf~DTg~efpeT~~~i~~~ 758 (928)
++......+.+.|+...+..++++|=++.|++=+.++ .|+... |..+.+.+++++..
T Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RSg~~~~ayl~~~~-----------~~~~~~a~~~v~~~ 123 (149)
T 1zzw_A 64 NLRQYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHT-----------RMTMTDAYKFVKGK 123 (149)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHHS-----------CCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHH
Confidence 3445567788888888777678999999998876654 444432 56788888877655
Done!