RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3753
(928 letters)
>gnl|CDD|223233 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein)
[Inorganic ion transport and metabolism].
Length = 510
Score = 506 bits (1304), Expect = e-170
Identities = 182/528 (34%), Positives = 276/528 (52%), Gaps = 51/528 (9%)
Query: 1 MYHYDKYD-HQLVKERVI---QYRDQVRRRLSNELSEEEFIVLRLQNGLYLQR--YAYML 54
M YD D +L E DQ+ RLS L E++F L +GLYLQ +A+ML
Sbjct: 1 MAPYDPLDNERLKAESNFLRGTIEDQLSDRLSGGLCEDDFRPLLKFDGLYLQEPDHAFML 60
Query: 55 RIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMH 114
R+ IP G+LS KQ+R L+ IA++Y R TTRQNIQF+ I+ K+ P+IL LASV +H
Sbjct: 61 RVRIPGGILSPKQLRALADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAELASVGLH 120
Query: 115 AIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQ 174
I T+G+ RN+T D L+G+ DEI D RP AEILR W FAYLPRKFKI++ G
Sbjct: 121 TIATAGDVARNVTGDPLAGLDADEIADPRPLAEILRIWLDGEKGFAYLPRKFKIAVDGGP 180
Query: 175 EDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRT-PIIGQIICKFLPWKHILTYIEAI 233
++ + ++DIG AIK G +GF V+VGGG+GRT P + +F+P + +L +EAI
Sbjct: 181 DNDVDVLINDIGFVAIKENDGLLGFNVLVGGGLGRTHPKTAPRLAEFVPPEDVLEVVEAI 240
Query: 234 LRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYF 293
+R+Y YGRR N K+R+K L++++G+E F+ +V K F
Sbjct: 241 VRVYRDYGRRANRKKARLKYLVEALGVEKFRREVEPRL------------------GKPF 282
Query: 294 ITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITS 353
+ + N + WV Q + G + G + +
Sbjct: 283 EPAR-----------PREFTGNGDHIGWVPQKDGLWHL-GLAVPN----------GRLKA 320
Query: 354 EQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDII 413
E + +A A+ F E+R+T QN+++ +V + L + + GL + +L + I
Sbjct: 321 EGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEAELEAILRILAALGLVTAPSSLRRNSI 380
Query: 414 CCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIGNIGILG 473
C G C+LA ++ A I+ ++ I+L+ISGC N CG H+ IG++G
Sbjct: 381 ACVGLPTCALALAETERDAPRIIARLEDLLDKHGLPITLHISGCPNGCGRPHLAEIGLVG 440
Query: 474 LNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYL 521
K G +Q+ +GG GK+ G + A+++ D I+R++ Y
Sbjct: 441 KAKGG---YQVYLGGGADGTR-GGKLYGENVPAEEILDAIDRLIGRYA 484
>gnl|CDD|234997 PRK02090, PRK02090, phosphoadenosine phosphosulfate reductase;
Provisional.
Length = 241
Score = 263 bits (675), Expect = 8e-82
Identities = 89/206 (43%), Positives = 118/206 (57%), Gaps = 7/206 (3%)
Query: 713 AVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPL 772
SS AED VL L+ + + DI + L+TG L ET ++++ +KVY P
Sbjct: 43 LALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPD 102
Query: 773 NSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSITRSNL 832
S G+ SV+ R +CC IRKV+PL +AL G +WITG RR QS TR+NL
Sbjct: 103 ASAAEQEARYGGLWE--QSVEDRDECCRIRKVEPLNRALAGLDAWITGLRREQSGTRANL 160
Query: 833 VLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKG 892
+ E I G K NPL +W +D+W Y+ +++PY+ L D GY SIGCEPCTRP E G
Sbjct: 161 PVLE---IDGGRFKINPLADWTNEDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPG 217
Query: 893 KDIRSGRWWWENSNIKECGLHVLDGK 918
+D R+GRWW KECGLH +
Sbjct: 218 EDERAGRWW--GGLKKECGLHEGNLP 241
>gnl|CDD|233701 TIGR02055, APS_reductase, thioredoxin-dependent adenylylsulfate APS
reductase. This model describes recently identified
adenosine 5'-phosphosulfate (APS) reductase activity
found in sulfate-assimilatory prokaryotes, thus
separating it from the traditionally described
phosphoadenosine 5'-phosphosulfate (PAPS) reductases
found in bacteria and fungi. Homologous to PAPS
reductase in enterobacteria, cyanobacteria, and yeast,
APS reductase here clusters with, and demonstrates
greater homology to plant APS reductase. Additionally,
the presence of two conserved C-terminal motifs
(CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate
specificity and serves as a FeS cluster [Central
intermediary metabolism, Sulfur metabolism].
Length = 191
Score = 252 bits (645), Expect = 3e-78
Identities = 93/194 (47%), Positives = 120/194 (61%), Gaps = 3/194 (1%)
Query: 719 LAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNN 778
L AED+VL DL + D+ +F L+TGRL ET ++++ Y I V P V
Sbjct: 1 LGAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEE 60
Query: 779 YIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSITRSNLVLKEKD 838
+ + G+N FY SV +CC IRKV+PLK+AL G +WITG RR QS TR+ E D
Sbjct: 61 QVKEYGLNLFYRSV--PHECCGIRKVEPLKRALAGVSAWITGLRRDQSPTRAQAPFLEID 118
Query: 839 IIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKGKDIRSG 898
G++K NPL +W +D+W YI +PYN L+D GY SIGCEPCTRP G+D R+G
Sbjct: 119 EA-FGLVKINPLADWTSEDVWEYIADNELPYNPLHDRGYPSIGCEPCTRPVAPGEDPRAG 177
Query: 899 RWWWENSNIKECGL 912
RWWWE + KECGL
Sbjct: 178 RWWWEEAAKKECGL 191
>gnl|CDD|236572 PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed.
Length = 513
Score = 213 bits (544), Expect = 5e-60
Identities = 139/490 (28%), Positives = 234/490 (47%), Gaps = 77/490 (15%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKY-DRNYGHFTTRQNIQFNWIKLKESPDILENLAS 110
+MLR+ +P G+L+S+Q+R+L+ I ++Y D TTRQN+Q I L++ P+IL L +
Sbjct: 66 FMLRLRVPNGILTSEQLRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRLKA 125
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFH----PEFAYLPRKF 166
V + ++Q+ + +RNIT ++G+ DE+IDTRP + L+ T + PEF+ LPRKF
Sbjct: 126 VGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNPEFSNLPRKF 185
Query: 167 KISISGSQEDRAAIFVHDIGLR-AIKNKLGKIGFCVIVGGGMGRTPIIGQIICK------ 219
I+I+G +++ ++DI A K+ G +GF V+VGG C
Sbjct: 186 NIAIAGGRDNSVHAEINDIAFVPAYKD--GVLGFNVLVGG------FFSSQRCAYAIPLN 237
Query: 220 -FLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGP 278
++ ++ AIL +Y G R N K R+ L+ GIE F+ V ++ GP
Sbjct: 238 AWVKPDEVVRLCRAILEVYRDNGLRANRQKGRLMWLIDEWGIEKFRAAVEAQF-----GP 292
Query: 279 STLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVI 338
LT I EK H VH K G V
Sbjct: 293 PLLTAAP------------------GDEIDWEKRDHIG-----VH----PQKQAGLNYVG 325
Query: 339 LSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTE--I 396
L ++ G + +E M +A LA+ Y E+R+T QN+++ ++ +NL E +
Sbjct: 326 L-----HVPVGRLYAEDMFELARLAEVYGSGEIRLTVEQNVIIPNIPDENLETFLAEPLL 380
Query: 397 KQYGLSESNINLLTDIICCPGGDFCSLA--NTK--SLPIAKNIMKYFSKDDQRNIGK-IS 451
+++ L L ++ C G +C+ A TK +L +AK + D + ++ + +
Sbjct: 381 QKFSLEPG--PLARGLVSCTGNQYCNFALIETKNRALALAKEL------DAELDLPQPVR 432
Query: 452 LNISGCINSCGHHHIGNIGILG--LNKNGN--EYFQILIGGSQGNKLNFGKIIGPSFSAD 507
++ +GC NSCG + +IG++G KNG E I +GG G G+ + +
Sbjct: 433 IHWTGCPNSCGQPQVADIGLMGTKARKNGKTVEGVDIYMGGKVGKDAKLGECVQKGIPCE 492
Query: 508 QVPDIINRIL 517
+ ++ +L
Sbjct: 493 DLKPVLKDLL 502
>gnl|CDD|223253 COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 261
Score = 197 bits (502), Expect = 4e-57
Identities = 82/214 (38%), Positives = 107/214 (50%), Gaps = 7/214 (3%)
Query: 708 TDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIK 767
P V + S + VL L + D + L+TG ET +++ Y +K
Sbjct: 37 EFSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEEYGLDLK 96
Query: 768 VYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKS--WITGQRRTQ 825
VY P + K G + SV+ + CC IRKV+PLK+AL W TG RR +
Sbjct: 97 VYRPDDEVAEGE--KYGGKLWEPSVE--RWCCDIRKVEPLKRALDEYGFDAWFTGLRRDE 152
Query: 826 SITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPC 885
S TR+ L + D I+ NPL +W E D+W YI N+PYN LYD GY SIGC PC
Sbjct: 153 SPTRAKLPVVSFDSEFGESIRVNPLADWTELDVWLYILANNLPYNPLYDQGYRSIGCWPC 212
Query: 886 TRP-TEKGKDIRSGRWWWENSNIKECGLHVLDGK 918
TRP +D R+GRW E + ECGLH D
Sbjct: 213 TRPVEPLAEDERAGRWEGELAEKTECGLHRADDP 246
>gnl|CDD|236573 PRK09567, nirA, ferredoxin-nitrite reductase; Reviewed.
Length = 593
Score = 199 bits (507), Expect = 2e-54
Identities = 126/493 (25%), Positives = 220/493 (44%), Gaps = 70/493 (14%)
Query: 51 AYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLAS 110
+YM R+ IP G+L+ Q L+ +A ++ Y H TTR N+Q I + + +LE L
Sbjct: 116 SYMCRLRIPNGILTHWQFAGLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGLVD 175
Query: 111 VEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISI 170
+ + A + + IRN+T +G+ E++DTRPYA LPRKF ++
Sbjct: 176 LGLTARGSGADNIRNVTGSPTAGIDPQELLDTRPYAREWHHHILNDRSLYGLPRKFNVAF 235
Query: 171 SGSQEDRAAIFVHDIGLRAIKNKLGK-----IGFCVIVGGGMGR------TPIIGQIICK 219
G +DIG +A++ G + F +++GG G T ++
Sbjct: 236 DGGGRIATLEDTNDIGFQAVRVLEGAGVAPGVYFRLVLGGITGHKDFARDTGVL------ 289
Query: 220 FLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPS 279
L + +AI+R++ + G R N K+R+K +L + G + F V E+
Sbjct: 290 -LRPEEATAVADAIVRVFIENGDRTNRKKARLKYVLDAWGFDKFLEAVEEKLG------- 341
Query: 280 TLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKING--YIIV 337
L RV + P+ + + H K G +I V
Sbjct: 342 ----RPLTRVPAEAVAPR------------------PAADRFAHVGVHPQKQPGLNWIGV 379
Query: 338 ILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIK 397
+L + G +T++QM +A +A Y E+R+T QN+++S V ++ + I+
Sbjct: 380 VLPV-------GRLTTDQMRGLAKIAARYGDGEIRLTVWQNLLISGVPDADVAAVEAAIE 432
Query: 398 QYGLSESNINLLTDIICCPGGDFCSLA--NTK--SLPIAKNIMKYFSKDDQRNIGKISLN 453
GL+ ++ ++ C G C A +TK +L IA + D NI +
Sbjct: 433 ALGLTTEASSIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPRVALDQPVNI-----H 487
Query: 454 ISGCINSCGHHHIGNIGILG--LNKNGN---EYFQILIGGSQGNKLNFGKIIGPSFSADQ 508
++GC +SC H+IG+IG++G + + E + I++GG G G+ + A+
Sbjct: 488 LTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVVGGGFGEDAAIGREVFRDVKAED 547
Query: 509 VPDIINRILKVYL 521
P ++ R+L+ YL
Sbjct: 548 APRLVERLLRAYL 560
Score = 49.6 bits (119), Expect = 6e-06
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 13/190 (6%)
Query: 56 IAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHA 115
+ +P G L++ QMR L+ IA +Y T QN+ + + D+ A++E
Sbjct: 379 VVLPVGRLTTDQMRGLAKIAARYGDGEIRLTVWQNLLISGVP---DADVAAVEAAIEALG 435
Query: 116 IQTSGNCIRN--ITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGS 173
+ T + IR + +G F DT+ +A + + P A L + I ++G
Sbjct: 436 LTTEASSIRAGLVACTGNAGCKFAAA-DTKGHALAIADY--CEPRVA-LDQPVNIHLTGC 491
Query: 174 QEDRAAIFVHDIGLRAIKNKLGK----IGFCVIVGGGMGRTPIIGQIICKFLPWKHILTY 229
A ++ DIGL K + + G+ ++VGGG G IG+ + + + +
Sbjct: 492 HHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVVGGGFGEDAAIGREVFRDVKAEDAPRL 551
Query: 230 IEAILRIYNQ 239
+E +LR Y
Sbjct: 552 VERLLRAYLA 561
>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase.
Length = 457
Score = 195 bits (497), Expect = 3e-54
Identities = 80/201 (39%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 721 AEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYI 780
AED+ L + +F+L+TGRL+ ET + + + Y +I+ +P EV +
Sbjct: 120 AEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFPDAVEVQALV 179
Query: 781 FKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQS-ITRSNLVLKEKDI 839
G+ +FY+ ++CC +RKV+PL++AL G ++WITGQR+ QS TR+ + + + D
Sbjct: 180 RNKGLFSFYEDGH--QECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDP 237
Query: 840 IHNGI-------IKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKG 892
+ G+ +K+NPL N ++WN++ T +VP N+L+ GY+SIGCEPCTRP G
Sbjct: 238 VFEGLDGGPGSLVKWNPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPG 297
Query: 893 KDIRSGRWWWENSNIKECGLH 913
+ R GRWWWE++ KECGLH
Sbjct: 298 QHEREGRWWWEDAKAKECGLH 318
>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase,
thioredoxin-independent. This enzyme, involved in the
assimilation of inorganic sulfate, is closely related to
the thioredoxin-dependent PAPS reductase of Bacteria
(CysH) and Saccharomyces cerevisiae. However, it has its
own C-terminal thioredoxin-like domain and is not
thioredoxin-dependent. Also, it has a substrate
preference for 5'-adenylylsulfate (APS) over
3'-phosphoadenylylsulfate (PAPS) so the pathway does not
require an APS kinase (CysC) to convert APS to PAPS.
Arabidopsis thaliana appears to have three isozymes, all
able to complement E. coli CysH mutants (even in
backgrounds lacking thioredoxin or APS kinase) but
likely localized to different compartments in
Arabidopsis [Central intermediary metabolism, Sulfur
metabolism].
Length = 463
Score = 182 bits (462), Expect = 1e-49
Identities = 84/201 (41%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 721 AEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYI 780
AED+ L + +F+L+TGRL+ ET + + Y +I+ +P EV +
Sbjct: 125 AEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMFPDAVEVQALV 184
Query: 781 FKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSI-TRSNLVLKEKDI 839
G+ +FY+ ++CC +RKV+PL++AL G K+WITGQR+ QS TRS + + + D
Sbjct: 185 RSKGLFSFYEDGH--QECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDP 242
Query: 840 IHNG-------IIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRPTEKG 892
+ G ++K+NP+ N KD+WN++ T +VP NTL+ GY+SIGCEPCTRP G
Sbjct: 243 VFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPG 302
Query: 893 KDIRSGRWWWENSNIKECGLH 913
+ R GRWWWE++ KECGLH
Sbjct: 303 QHEREGRWWWEDAKAKECGLH 323
>gnl|CDD|178050 PLN02431, PLN02431, ferredoxin--nitrite reductase.
Length = 587
Score = 184 bits (470), Expect = 2e-49
Identities = 125/483 (25%), Positives = 220/483 (45%), Gaps = 57/483 (11%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYG--HFTTRQNIQFNWIKLKESPDILENLA 109
+M+R+ +P G+ +S Q R L+ + +KY G TTRQN Q + L + P IL+ L
Sbjct: 137 FMMRLKLPNGVTTSAQTRYLASVIEKYGE-DGCADVTTRQNWQIRGVVLPDVPAILKGLE 195
Query: 110 SVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTF----HPEFAYLPRK 165
V + ++Q+ + +RN + L+G+ EI+DTRPY +L + T +PE LPRK
Sbjct: 196 EVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSDYITNNGRGNPEITNLPRK 255
Query: 166 FKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQI-ICKFLPWK 224
+ + + GS + ++D+ K G+ GF ++VGG I + ++P
Sbjct: 256 WNVCVVGSHDLFEHPHINDLAYMPA-TKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVPAD 314
Query: 225 HILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLE 284
++ +AIL + G R N K+R+ L+ +G+E F+ +V + N
Sbjct: 315 DVVPLCKAILEAFRDLGTRGNRQKTRMMWLIDELGVEGFRSEVEKRMPN----------G 364
Query: 285 ELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRI 344
EL+R + L +K++E + K G LS +
Sbjct: 365 ELER-------AASEDLV------------DKKWERRDYLGVHPQKQEG-----LSYVGL 400
Query: 345 NMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSES 404
++ G + + M+ +A LAD Y ELR+T QNI++ +V + L E S +
Sbjct: 401 HVPVGRLQAADMDELARLADEYGSGELRLTVEQNIIIPNVPNSKVEALLAEPLLQRFSPN 460
Query: 405 NINLLTDIICCPGGDFC--SLANTK--SLPIAKNIMKYFSKDDQRNIGKISLNISGCINS 460
LL ++ C G FC ++ TK +L + + + + + ++ +GC NS
Sbjct: 461 PGLLLKGLVACTGNQFCGQAIIETKARALKVTEELERLVEVPR-----PVRMHWTGCPNS 515
Query: 461 CGHHHIGNIGILGL---NKNGN--EYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINR 515
CG + +IG +G ++NG E I +GG G+ + + D++ ++
Sbjct: 516 CGQVQVADIGFMGCMARDENGKAVEGADIFVGGRVGSDSHLAEEYKKGVPCDELVPVVAD 575
Query: 516 ILK 518
IL
Sbjct: 576 ILI 578
Score = 31.3 bits (71), Expect = 2.9
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 449 KISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKI-IGPSFSAD 507
K ++ + G + H HI ++ + K+G F +L+GG K I + AD
Sbjct: 255 KWNVCVVGSHDLFEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVPAD 314
Query: 508 QVPDIINRILKVY 520
V + IL+ +
Sbjct: 315 DVVPLCKAILEAF 327
>gnl|CDD|191441 pfam06073, DUF934, Bacterial protein of unknown function (DUF934).
This family consists of several bacterial proteins of
unknown function. One of the members of this family,
BMEI1764, is thought to be an oxidoreductase.
Length = 110
Score = 160 bits (406), Expect = 5e-46
Identities = 56/110 (50%), Positives = 74/110 (67%), Gaps = 4/110 (3%)
Query: 583 GIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIG 642
G+W+ D+ EEL L + +IA++F FTDGRGYS A LR ++ Y GELRA+G
Sbjct: 1 GVWLEPDDDPEELAPDLD----RLALIALDFPAFTDGRGYSQARLLRERYGYKGELRAVG 56
Query: 643 DVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQTSADEKIPL 692
DVL+DQLF+M R GF+SF +R DK++ AL L+ FS YQ +ADE PL
Sbjct: 57 DVLRDQLFFMLRCGFDSFALRADKDLEDALKALDRFSVFYQPAADEPQPL 106
>gnl|CDD|129526 TIGR00434, cysH, phosophoadenylyl-sulfate reductase (thioredoxin).
This enzyme, involved in the assimilation of inorganic
sulfate, is designated cysH in Bacteria and MET16 in
Saccharomyces cerevisiae. Synonyms include
phosphoadenosine phosphosulfate reductase, PAPS
reductase, and PAPS reductase, thioredoxin-dependent. In
a reaction requiring reduced thioredoxin and NADPH, it
converts 3(prime)-phosphoadenylylsulfate (PAPS) to
sulfite and adenosine 3(prime),5(prime) diphosphate
(PAP). A related family of plant enzymes, scoring below
the trusted cutoff, differs in having a thioredoxin-like
C-terminal domain, not requiring thioredoxin, and in
having a preference for 5(prime)-adenylylsulfate (APS)
over PAPS [Central intermediary metabolism, Sulfur
metabolism].
Length = 212
Score = 160 bits (407), Expect = 6e-45
Identities = 75/209 (35%), Positives = 113/209 (54%), Gaps = 23/209 (11%)
Query: 714 VFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLN 773
V+++S + VL DL+ + + DI + L+TG ET +++++ Y IKVY P
Sbjct: 17 VYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDL 76
Query: 774 SEVN------NYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIG--NKSWITGQRRTQ 825
S + +++ N K Y+RKV+P+ +AL +W TG RR Q
Sbjct: 77 SLAEQAAKYGDKLWEQDPN----------KYDYLRKVEPMHRALKELHASAWFTGLRRDQ 126
Query: 826 SITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPC 885
+R+NL + D GI+K PL +W KD++ YI+ +N+PYN L+D GY SIG
Sbjct: 127 GPSRANLSILNIDEK-FGILKVLPLIDWTWKDVYQYIDAHNLPYNPLHDQGYPSIGDYHS 185
Query: 886 TRPTEKGKDIRSGRWWWENSNIK-ECGLH 913
TRP ++G+D R+GRW K ECGLH
Sbjct: 186 TRPVKEGEDERAGRW---KGKAKTECGLH 211
>gnl|CDD|216287 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain.
Sulphite and nitrite reductases are vital in the
biosynthetic assimilation of sulphur and nitrogen,
respectfully. They are also both important for the
dissimilation of oxidized anions for energy
transduction.
Length = 154
Score = 158 bits (401), Expect = 9e-45
Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 5/158 (3%)
Query: 119 SGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRA 178
SG+ +RN+TS +G+ +E+IDTRP A+ L F LPRKFKI++SG D
Sbjct: 1 SGDNVRNVTSCPGAGLCPEELIDTRPLAKALEDELEDEYGFPDLPRKFKIAVSGCPNDCV 60
Query: 179 AIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICK-FLPWKHILTYIEAILRIY 237
A +DIG + G+IGF ++VGGG+GRTP + F+P + +L IEAIL +Y
Sbjct: 61 AAHANDIGFIGTEKDGGEIGFNILVGGGLGRTPGAAATLAVGFVPEEDVLEVIEAILEVY 120
Query: 238 NQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIK 275
RR N K R+K L++ +G+E F+ +V E
Sbjct: 121 ----RRTNRKKERLKYLIERLGLEKFREEVEERLGQKL 154
Score = 73.4 bits (181), Expect = 3e-15
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 409 LTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIG------KISLNISGCINSCG 462
+ ++ CPG C + P+AK + + G K + +SGC N C
Sbjct: 5 VRNVTSCPGAGLCPEELIDTRPLAKALEDEL----EDEYGFPDLPRKFKIAVSGCPNDCV 60
Query: 463 HHHIGNIGILGL-NKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVP-DIINRILKVY 520
H +IG +G G F IL+GG G + F ++ ++I IL+VY
Sbjct: 61 AAHANDIGFIGTEKDGGEIGFNILVGGGLGRTPGAAATLAVGFVPEEDVLEVIEAILEVY 120
Query: 521 LR 522
R
Sbjct: 121 RR 122
>gnl|CDD|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly modified
version of the P loop, the fingerprint peptide of
mononucleotide-binding proteins, is present in the
active site of the protein, which appears to be a
positively charged cleft containing a number of
conserved arginine and lysine residues. Although PAPS
reductase has no ATPase activity, it shows a striking
similarity to the structure of the ATP pyrophosphatase
(ATP PPase) domain of GMP synthetase, indicating that
both enzyme families have evolved from a common
ancestral nucleotide-binding fold. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP) . It is also
found in NodP nodulation protein P from Rhizobium
meliloti which has ATP sulphurylase activity (sulphate
adenylate transferase) .
Length = 173
Score = 150 bits (381), Expect = 6e-42
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 7/175 (4%)
Query: 712 PAVFASSLAAEDMVLTDLIL---RNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKV 768
V + S + VL L L + + L+TG ET ++++ Y + V
Sbjct: 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVV 60
Query: 769 YYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALI--GNKSWITGQRRTQS 826
P +S G+ F R+ CC I KV+PL++AL G +WITG RR +S
Sbjct: 61 VRPPDSPAEGLA--LGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDES 118
Query: 827 ITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIG 881
R+ L + D GI+K NPL +W +D+W Y+ + +PYN LYD GY SIG
Sbjct: 119 ARRALLPVVWTDDGKGGILKVNPLLDWTYEDVWAYLARHGLPYNPLYDQGYRSIG 173
>gnl|CDD|201832 pfam01507, PAPS_reduct, Phosphoadenosine phosphosulfate reductase
family. This domain is found in phosphoadenosine
phosphosulfate (PAPS) reductase enzymes or PAPS
sulfotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP). It is also
found in NodP nodulation protein P from Rhizobium which
has ATP sulfurylase activity (sulfate adenylate
transferase).
Length = 173
Score = 149 bits (379), Expect = 1e-41
Identities = 68/179 (37%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYP 771
V + S + +VL L + + ++TG ET ++++ Y +KVY P
Sbjct: 1 ELVVSFSGGKDSLVLLHLASKAFPPGPVIFIDTGYEFPETYEFVDELEEKYGLNLKVYLP 60
Query: 772 LNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKAL--IGNKSWITGQRRTQSITR 829
+S F GIN + ++CC +RKV+PLK+AL +G +W TG RR +S +R
Sbjct: 61 EDS------FAEGINPEGIPSSLYRRCCRLRKVEPLKRALKELGFDAWFTGLRRDESPSR 114
Query: 830 SNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRP 888
+ L + D +IK PL NW E D+W YI NVPYN LYD GY SIGC PCT P
Sbjct: 115 AKLPIVSIDGDFPKVIKVFPLLNWTETDVWQYILANNVPYNPLYDQGYRSIGCYPCTGP 173
>gnl|CDD|226272 COG3749, COG3749, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 135 bits (341), Expect = 1e-36
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 11/163 (6%)
Query: 527 MCKIIKNDTIVNDN-WKMLYENDFIEENVKLLEDHVIVPFK-FLKKYLKFNSNNNLNIGI 584
M K+IK V D+ W L + D + VI+P +L+ + + +G+
Sbjct: 3 MTKLIKLQGFVEDDPWTALTDEDGAPDEGD-----VILPLAAWLEHGEERRRSRAGRLGV 57
Query: 585 WINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDV 644
W+ D+ E L + + ++A++F F DGRGYS A LR + + GELRA+GDV
Sbjct: 58 WLAPDDEVE----ALAPDLDRLALVAVDFPAFRDGRGYSKAELLRSRLGFQGELRAVGDV 113
Query: 645 LQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQTSAD 687
L DQL +M R GF++F +R+D I L GL S YQ +AD
Sbjct: 114 LIDQLPFMLRCGFDAFAVRNDVAIERLLEGLGGISVYYQPAAD 156
>gnl|CDD|131112 TIGR02057, PAPS_reductase, phosphoadenosine phosphosulfate
reductase, thioredoxin dependent. Requiring thioredoxin
as an electron donor, phosphoadenosine phosphosulfate
reductase catalyzes the reduction of
3'-phosphoadenylylsulfate (PAPS) to sulfite and
phospho-adenosine-phosphate (PAP). Found in
enterobacteria, cyanobacteria, and yeast, PAPS reductase
is related to a group of plant (TIGR00424) and bacterial
(TIGR02055) enzymes preferring 5'-adenylylsulfate (APS)
over PAPS as a substrate for reduction to sulfite
[Central intermediary metabolism, Sulfur metabolism].
Length = 226
Score = 129 bits (326), Expect = 8e-34
Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 17/218 (7%)
Query: 702 ALNNIVTDYKPAVFASSLAAEDMVLTDLILR-NNFDINIFTLNTGRLHSETLNMLNKIYL 760
++ V S+ + +V L+ + I + ++T +TL + +++
Sbjct: 20 SIVTFPHGL---VQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKDELTK 76
Query: 761 TYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRK---KCCYIRKVKPLKKAL--IGNK 815
Y + +Y E + A Y + +K K YI KV+P+++AL +
Sbjct: 77 KYYQTLNLYKYDGCES-----EADFEAKYGKLLWQKDIEKYDYIAKVEPMQRALKELNAS 131
Query: 816 SWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875
+W TG+RR Q R+NL + E D NGI+K NPL +W + ++ Y++ +NVPYN L D
Sbjct: 132 AWFTGRRRDQGSARANLPVIEIDE-QNGILKVNPLIDWTFEQVYQYLDAHNVPYNPLLDQ 190
Query: 876 GYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLH 913
GY SIG TR ++G+D R+GR W+ ECG+H
Sbjct: 191 GYRSIGDYHSTRKVKEGEDERAGR--WKGKLKTECGIH 226
>gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein,
beta-component. Sulfite reductase (NADPH) catalyzes a
six electron reduction of sulfite to sulfide in
prokaryotic organisms. It is a complex oligomeric enzyme
composed of two different peptides with a subunit
composition of alpha(8)-beta(4). The alpha component,
encoded by cysJ, is a flavoprotein containing both FMN
and FAD, while the beta component, encoded by cysI, is a
siroheme, iron-sulfur protein. In Salmonella typhimurium
and Escherichia coli, both the alpha and beta subunits
of sulfite reductase are located in a unidirectional
gene cluster along with phosphoadenosine phosphosulfate
reductase, which catalyzes a two step reduction of PAPS
to give free sulfite. In cyanobacteria and plant
species, sulfite reductase ferredoxin (EC 1.8.7.1)
catalyzes the reduction of sulfite to sulfide [Central
intermediary metabolism, Sulfur metabolism].
Length = 541
Score = 121 bits (305), Expect = 1e-28
Identities = 129/530 (24%), Positives = 218/530 (41%), Gaps = 100/530 (18%)
Query: 20 RDQVRRRLSNELSEEEFIVLRLQNGLYLQ----------------RYAYMLRIAIPYGML 63
+ + L+ S ++F +++ +G+Y Q Y +MLR +P G++
Sbjct: 15 LESLADPLTGGFSGDDFQLIKF-HGMYQQDDRDLRAERAEQKLEPAYQFMLRCRLPGGVI 73
Query: 64 SSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNCI 123
+ KQ + A++Y TTRQ QF+ I + + + + S + +I T G+
Sbjct: 74 TPKQWLAIDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAIHSAGLDSIATCGDVN 133
Query: 124 RNI--TSDELSGVSFDEIID------------TRPYAEI-LRQWSTFHPEF-------AY 161
RN+ TS+ E + TR Y EI L + E Y
Sbjct: 134 RNVLCTSNPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVAGTEEVEPIYGPTY 193
Query: 162 LPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRT-------PIIG 214
LPRKFK + + ++ +D+G AI + IGF V++GGG+G T P +
Sbjct: 194 LPRKFKTGVVIPPINDVDVYANDLGFVAIADNGKLIGFNVLIGGGLGMTHGNKATYPRLA 253
Query: 215 QIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNI 274
I F+P +H L EAI+ +G R + +R K + +G++ F+ +V E I
Sbjct: 254 NEI-GFIPPEHTLAVAEAIVTTQRDFGNRTDRKNARTKYTIDRMGLDTFKAEV-ERRAGI 311
Query: 275 KNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGY 334
L+ + Y T H + WV K N +
Sbjct: 312 T----------LEPARPYVFT------------------HRGDRYGWV----KGIDGNWH 339
Query: 335 IIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWT 394
+ + + RI P + IA + + R+T QN+++++V + +
Sbjct: 340 LTLFIESGRIADYPDKPLMTGLREIAKIHK----GDFRITPNQNLIIANVPEGGKAKIEA 395
Query: 395 EIKQYGLSESN-INLLTDIICCPGGDFCSLANTKS---LP--IAK--NIM-KYFSKDDQR 445
+QYGL + L + + C C LA ++ LP I K NIM K+ D++
Sbjct: 396 LARQYGLIDGKVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKHGLADEE- 454
Query: 446 NIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLN 495
I L ++GC N CG ++ IG++G K Y +L G +G +L
Sbjct: 455 ----IVLRMTGCPNGCGRPYLAEIGLVG--KAPGRYNLMLGGNRRGQRLP 498
>gnl|CDD|237402 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional.
Length = 569
Score = 117 bits (296), Expect = 3e-27
Identities = 128/550 (23%), Positives = 219/550 (39%), Gaps = 149/550 (27%)
Query: 26 RLSNELSEEEFIVLRLQNGLYLQ----------------RYAYMLRIAIPYGMLSSKQMR 69
L+ SE++F +L+ +G Y Q Y +MLR +P G+++ +Q
Sbjct: 35 GLTGGFSEDDFQLLKF-HGSYQQDDRDIRAERAEQKLEPAYQFMLRCRLPGGVITPQQWL 93
Query: 70 MLSYIAKKYDRNYG--HFTTRQNIQFNWI---KLKESPDILENLASVEMHAIQTSGNCIR 124
L +A +Y G TTRQ QF+ I LK +++ + SV + + G+ R
Sbjct: 94 ALDKLADEY--GNGTLRLTTRQTFQFHGILKKNLKP---VIQTINSVLLDTLAACGDVNR 148
Query: 125 NITS-------------DELSGVSFDEIID-----TRPYAEILRQW-------STFHPEF 159
N+ E + +I D TR YAEI W + E
Sbjct: 149 NVMCTPNPYESRLHAEAYEWA----KKISDHLLPRTRAYAEI---WLDGEKVATFSGTEE 201
Query: 160 ------AYLPRKFKISIS--GSQE-DRAAIFVHDIGLRAI--KNKLGKIGFCVIVGGGMG 208
YLPRKFKI+++ + D ++ +D+G AI KL +GF V+VGGGMG
Sbjct: 202 EPIYGKTYLPRKFKIAVAVPPDNDVD---VYANDLGFVAIAENGKL--VGFNVLVGGGMG 256
Query: 209 RT-------PIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIE 261
T P + + ++P + +L EA++ YG R + +R+K L+ +G++
Sbjct: 257 MTHGDKETYPRLADELG-YVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYTLERVGLD 315
Query: 262 NFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENW 321
F+ +V +R K + + W
Sbjct: 316 WFKAEVE------------------RRAGKKL--EPARPYEFT---------GRGDRLGW 346
Query: 322 VHQNTKKHKI-----NGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHT 376
V K + NG RI PG + +A + + R+T
Sbjct: 347 VEGIDGKWHLTLFIENG---------RIKDYPG---RPLKTGLREIAKIHK-GDFRLTAN 393
Query: 377 QNIVLSDVTKDNLFNLWTEIKQYGL-SESNINLLTD-IICCPGGDFCSLANTKS---LP- 430
QN+++++V + + +++YGL + L + C C LA ++ LP
Sbjct: 394 QNLIIANVPPSDKAKIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPS 453
Query: 431 -IAK--NIM-KYFSKDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILI 486
I + ++ K+ D+ I + ++GC N C ++ IG++G K Y + +
Sbjct: 454 FIDRIEALLAKHGLSDE-----HIVIRMTGCPNGCARPYLAEIGLVG--KAPGRY-NLYL 505
Query: 487 GGS-QGNKLN 495
GGS G +L
Sbjct: 506 GGSFNGTRLP 515
>gnl|CDD|131097 TIGR02042, sir, ferredoxin-sulfite reductase. Distantly related to
the iron-sulfur hemoprotein of sulfite reductase (NADPH)
found in Proteobacteria and Eubacteria, sulfite
reductase (ferredoxin) is a cyanobacterial and plant
monomeric enzyme that also catalyzes the reduction of
sulfite to sulfide [Central intermediary metabolism,
Sulfur metabolism].
Length = 577
Score = 104 bits (260), Expect = 5e-23
Identities = 119/499 (23%), Positives = 207/499 (41%), Gaps = 103/499 (20%)
Query: 50 YAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKES-----PDI 104
Y +MLR P G + + L +A +Y TTRQ Q + I LK++ I
Sbjct: 64 YQFMLRTKNPGGYVPPQLYLTLDDLADEYGNGTLRATTRQTFQLHGI-LKKNLKTVISTI 122
Query: 105 LENLASV----------------------EMHAIQTSGNCIRNITSDELSGVSFD----- 137
++NL S E + + I ++ + + SG ++
Sbjct: 123 VKNLGSTLGACGDLNRNVMAPPAPFRKRPEYEFAREYADNIADLLTPQ-SGAYYELWLDG 181
Query: 138 -EIIDTRPYAEIL--RQWSTFHPEFA----------YLPRKFKISISGSQEDRAAIFVHD 184
+++ P E++ R ++ FA YLPRKFKI+++ ++ +F D
Sbjct: 182 EKVMSAEPDPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQD 241
Query: 185 IGLRAIKNKLGKI-GFCVIVGGGMGRTPIIGQIICK------FLPWKHILTYIEAILRIY 237
IGL + N+ G++ GF + VGGGMGRT + + ++P + I ++AI+
Sbjct: 242 IGLVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLGYVPKEDIYYAVKAIVATQ 301
Query: 238 NQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPK 297
YG RD+ +R+K L+ GIE F+ +V E++ K P EL P+
Sbjct: 302 RDYGDRDDRRHARMKYLISDWGIEKFR-EVVEQYFGKKIAPV----REL---------PE 347
Query: 298 YKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQM- 356
++ K++ W Q K L L + D + Q+
Sbjct: 348 FEY---------------KDYLGWHEQGDGK--------WFLGLHIDSGRVKDDGNWQLK 384
Query: 357 NFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNI--NLLTDIIC 414
+ + + Y+ +R+T QNI+L D+ + + T + Q G+ + L +
Sbjct: 385 KALREIVEKYNL-PVRLTPNQNIILYDIQPEWKRAITTVLAQRGVLQPEAIDPLNRYAMA 443
Query: 415 CPGGDFCSLANTKS---LP-IAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIGNIG 470
CP C LA T+S +P I K I K + + ++GC N C ++ +G
Sbjct: 444 CPALPTCGLAITESERAIPGILKRIRALLEKVGLPD-EHFVVRMTGCPNGCARPYMAELG 502
Query: 471 ILGLNKNGNEYFQILIGGS 489
+G + +Q+ +GGS
Sbjct: 503 FVG---SAPNSYQVWLGGS 518
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
Length = 623
Score = 95.6 bits (238), Expect = 3e-20
Identities = 115/507 (22%), Positives = 202/507 (39%), Gaps = 124/507 (24%)
Query: 50 YAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLA 109
Y +MLR P G + ++ ++ +A ++ TTRQ Q + + LK+ D+ ++
Sbjct: 108 YQFMLRTKQPAGKVPNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGV-LKK--DLKTVMS 164
Query: 110 SVEMHAIQTSGNC---IRNI-----------------TSDEL-------SGVSFDEIID- 141
S+ + T G C RN+ + + SG +D +D
Sbjct: 165 SIIKNMGSTLGACGDVNRNVLAPAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDG 224
Query: 142 ------TRPYAEILRQWSTFHPEF----------AYLPRKFKISISGSQEDRAAIFVHDI 185
P R ++ F +LPRKFKI+++ ++ I +DI
Sbjct: 225 EKIMSAEPPEVTKARNDNSHGTNFEDSPEPIYGTQFLPRKFKIAVTVPGDNSVDILTNDI 284
Query: 186 GLRAIKNKLGK-IGFCVIVGGGMGRTPIIGQIICK------FLPWKHILTYIEAILRIYN 238
G+ + ++ G+ G+ + VGGGMGRT + ++P + IL ++AI+
Sbjct: 285 GVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQR 344
Query: 239 QYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYF---IT 295
YGRRD+ +SR+K L+ S GIE F+ V++Y+
Sbjct: 345 DYGRRDDRKQSRMKYLVHSWGIEKFR----------------------SVVEQYYGKKFE 382
Query: 296 PKYKTLPKNSIILKEKCKHNKEFENWVHQNTKK-----HKINGYIIVILSLKRINMAPGD 350
P ++ LP+ K + W Q K H NG
Sbjct: 383 P-FRELPEWEF---------KSYLGWHEQGDGKLFYGVHVDNG----------------R 416
Query: 351 ITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESN----I 406
I E + + + Y+ +R+T QN++L D+ + + GL E +
Sbjct: 417 IKGEAKKALREVIEKYNL-PVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPL 475
Query: 407 NLLTDIICCPGGDFCSLANT---KSLP-IAKNIMKYFSKDDQRNIGKISLNISGCINSCG 462
N + CP C LA T + +P I K + F+K + + + ++GC N C
Sbjct: 476 NRTA--MACPALPLCPLAITEAERGIPDILKRVRAMFNKVGLKYDESVVVRMTGCPNGCA 533
Query: 463 HHHIGNIGILGLNKNGNEYFQILIGGS 489
++ +G +G +G +QI +GG+
Sbjct: 534 RPYMAELGFVG---DGPNSYQIWLGGT 557
>gnl|CDD|233866 TIGR02435, CobG, precorrin-3B synthase. An iron-sulfur protein. An
oxygen atom from dioxygen is incorporated into the
macrocycle at C-20. In the aerobic cobalamin biosythesis
pathway, four enzymes are involved in the conversion of
precorrin-3A to precorrin-6A. The first of the four
steps is carried out by EC 1.14.13.83, precorrin-3B
synthase (CobG), yielding precorrin-3B as the product.
This is followed by three methylation reactions, which
introduce a methyl group at C-17 (CobJ; EC 2.1.1.131),
C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152)
of the macrocycle, giving rise to precorrin-4,
precorrin-5 and precorrin-6A, respectively [Biosynthesis
of cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 390
Score = 91.8 bits (228), Expect = 1e-19
Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 22/223 (9%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPD---ILENL 108
++R+ +P G L+ Q L+ +A++ T R N+Q + + D + + L
Sbjct: 18 LLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGL----TADHDALSQAL 73
Query: 109 ASVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKI 168
+ + A + + IRNI L+G+ EI DTRP A LR LP KF +
Sbjct: 74 LAAGLGAAGAAADDIRNIEVSPLAGIDPGEIADTRPLAAELRAALENERALLELPPKFSV 133
Query: 169 SI-SGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVI-VGGGMGRTPIIGQIICKFLPWKHI 226
+I G + D+ L+A+ G V+ + G + +
Sbjct: 134 AIDGGGRLVLLGD-TADVRLQALTT--GAGVAWVVSLAGISTSARSLVT-----VAPDAA 185
Query: 227 LTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNE 269
+ A+LR++ + G +R + L + V +
Sbjct: 186 VPVAVALLRVFVELGG-----AARGRDLDDAFLFALALELVED 223
Score = 58.7 bits (142), Expect = 7e-09
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 349 GDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINL 408
G +T+ Q+ +A LA +LR+T + +++ + + + GL S +
Sbjct: 266 GQLTAAQLRGLAQLAQALGDGDLRLTPWRALLVLGLPPERADAAQRALAALGLVTSASDP 325
Query: 409 LTDIICCPGGDFC--SLANTKSLPIAKNIMKYFSKDDQRNIG---KISLNISGCINSCGH 463
II C G C +LA+T++ A+ + I++++SGC C H
Sbjct: 326 RARIIACTGAPGCASALADTRA--DAEALA--------AYCEPTAPITVHLSGCAKGCAH 375
Query: 464 HHIGNIGILG 473
I ++
Sbjct: 376 PGPAAITLVA 385
>gnl|CDD|225131 COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin),
alpha and beta subunits [Energy production and
conversion].
Length = 317
Score = 79.7 bits (197), Expect = 5e-16
Identities = 59/267 (22%), Positives = 98/267 (36%), Gaps = 62/267 (23%)
Query: 51 AYMLRIAIP-YGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLA 109
Y +R+ P G LS++ +R ++ IA+KY H T+RQ ++ I +++ D++E L
Sbjct: 29 TYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELR 88
Query: 110 SVEMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKIS 169
+ + T G +R I + + DT A L + P +P KFKI+
Sbjct: 89 EIGLPVGST-GPAVRAIVACPGPRTCETALYDTTELARRLEEEFLEVP----VPYKFKIA 143
Query: 170 ISGSQEDRAAIFVHDIGL-------------------------RAIKNKLGK-------- 196
+SG D HDIG+ AI K
Sbjct: 144 VSGCPNDCTRPQAHDIGIVGVWKPKVDEELCRGCGKCVKVCPTGAITWDGKKLKIDGSKC 203
Query: 197 ------IGFC-------------VIVGGGMGR-TPIIGQIICKFLPWKHILTYIEAILRI 236
I C ++VGG GR +G+ + I+ I+ + +
Sbjct: 204 IGCGKCIRACPKAAFRGEKVGIAILVGGKTGRELGRVGKPLVPVEDEDEIIDIIKKTIEV 263
Query: 237 YNQYGRRDNIYKSRIKILLKSIGIENF 263
+ +Y RI + +G E F
Sbjct: 264 WREYA-EKPGE--RIGDFIDRVGFEKF 287
Score = 57.4 bits (139), Expect = 1e-08
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 343 RINMAPGDITS-EQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGL 401
R+ PG S E + IA++A+ Y + +T Q + + ++ ++ ++ E+++ GL
Sbjct: 33 RVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGL 92
Query: 402 SE-SNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINS 460
S + I+ CPG C A + +A+ + + F + K + +SGC N
Sbjct: 93 PVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFL--EVPVPYKFKIAVSGCPND 150
Query: 461 CGHHHIGNIGILG 473
C +IGI+G
Sbjct: 151 CTRPQAHDIGIVG 163
>gnl|CDD|217572 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like
half domain. Sulfite and Nitrite reductases are key to
both biosynthetic assimilation of sulfur and nitrogen
and dissimilation of oxidized anions for energy
transduction. Two copies of this repeat are found in
Nitrite and Sulfite reductases and form a single
structural domain.
Length = 67
Score = 72.6 bits (179), Expect = 6e-16
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASV 111
YM+R+ +P G L+++Q+R L+ IA+KY TTRQN++ + + ++ P +LE LA
Sbjct: 8 YMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPALLEELAEA 67
Score = 57.9 bits (141), Expect = 1e-10
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 343 RINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQY 399
R+ + G +T+EQ+ +A++A+ Y E+R+T QN+ L V +++L L E+ +
Sbjct: 11 RVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPALLEELAEA 67
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 82.4 bits (204), Expect = 6e-16
Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 346 MAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQ-----YG 400
M G E++ IA++A+ Y+ +++T Q I L V K++L +W ++ YG
Sbjct: 559 MPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMASGHAYG 618
Query: 401 LSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINS 460
+ L + C G FC S+ + + K + + R K+ + +SGC +
Sbjct: 619 KA------LRTVKTCVGSTFCRFGTQDSVGLGIRLEKRY--EGLRTPHKVKMAVSGCPRN 670
Query: 461 CGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVY 520
C I ++GI+G K + + +GG+ G K ++ + ++V + I+ L+ Y
Sbjct: 671 CAEAGIKDVGIIGTEKG----WNLYVGGNGGMKPRHADLLAKVLTEEEVLEYIDAFLQYY 726
Query: 521 LR 522
Sbjct: 727 RE 728
Score = 57.7 bits (140), Expect = 2e-08
Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 28/224 (12%)
Query: 58 IPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQ 117
+P G+ + +++R ++ +A+KY+ T Q I +K ++ P I +L HA
Sbjct: 559 MPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMASGHAY- 617
Query: 118 TSGNCIRNITSDELSGVSF------DEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISIS 171
G +R + + G +F D + +++ E P K K+++S
Sbjct: 618 --GKALRTVKT--CVGSTFCRFGTQDS---VGLGIRLEKRY-----EGLRTPHKVKMAVS 665
Query: 172 GSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIE 231
G + A + D+G+ + G+ + VGG G P ++ K L + +L YI+
Sbjct: 666 GCPRNCAEAGIKDVGIIGTEK-----GWNLYVGGNGGMKPRHADLLAKVLTEEEVLEYID 720
Query: 232 AILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIK 275
A L+ Y + Y R L +G+E+ + V ++ + K
Sbjct: 721 AFLQYYRETAD----YLERTAPWLDRLGLEHIKEVVLDDPEGRK 760
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 81.8 bits (202), Expect = 8e-16
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 6/177 (3%)
Query: 346 MAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESN 405
M G EQ+ IAN+A+ YS +++T Q + L KD+L N+W ++K G +
Sbjct: 560 MYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYEHAY 619
Query: 406 INLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHH 465
L + C G +C N S+ +A + + + + R KI + +SGC C
Sbjct: 620 GKALRTVKTCVGSQWCRYGNQDSVQLAIQLERRY--EGLRTPHKIKIGVSGCERECAEAA 677
Query: 466 IGNIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLR 522
++G++ K N Y +GG+ G G ++ + + I+R L+ Y
Sbjct: 678 GKDVGVIATEKGWNLY----VGGNGGTHPRHGDLLAVDEDEETLIGYIDRFLQYYRE 730
Score = 53.3 bits (128), Expect = 5e-07
Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 25/221 (11%)
Query: 58 IPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEM---- 113
+ G + +Q+R ++ IA+ Y Y T Q + K + P+I ++L
Sbjct: 560 MYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYEHAY 619
Query: 114 -HAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISG 172
A++T C+ + + S I E LR P K KI +SG
Sbjct: 620 GKALRTVKTCVGSQWCRYGNQDSVQLAIQLERRYEGLR-----------TPHKIKIGVSG 668
Query: 173 SQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEA 232
+ + A D+G+ A + G+ + VGG G P G ++ + ++ YI+
Sbjct: 669 CERECAEAAGKDVGVIATEK-----GWNLYVGGNGGTHPRHGDLLAVDEDEETLIGYIDR 723
Query: 233 ILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKN 273
L QY R Y R L+ +GI++ + + E+
Sbjct: 724 FL----QYYRETADYLERTAPWLERLGIDHVREVLFEDDLR 760
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 60.5 bits (147), Expect = 2e-09
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 692 LNSFVKTVLDALNNIVTDYKP---AVFASSLAAEDMVLTDLILRNNF-DINIFTLNTGRL 747
+ + L L + + YK A+ AS +D ++ L+ + D+ + ++TG
Sbjct: 159 IEKLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLE 218
Query: 748 HSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPL 807
+ ET+N + KY + + + K GI + + C K+ PL
Sbjct: 219 YPETINYVKD--FAKKYDLNLDTLDGDNFWENLEKEGI-----PTKDNRWCNSACKLMPL 271
Query: 808 KKAL---IGNKSWIT--GQRRTQSITRSNLVLKEKD-IIHNGIIKFNPLYNWLEKDIWNY 861
K+ L GNK +T G R+ +S TR+NL + K I F P+ +W DIW+Y
Sbjct: 272 KEYLKKKYGNKKVLTIDGSRKYESFTRANLDYERKSGFIDFQTNVF-PILDWNSLDIWSY 330
Query: 862 INTYNVPYNTLYDNGYLSIGCEPC 885
I ++ YN LYD G+ IGC C
Sbjct: 331 IYLNDILYNPLYDKGFERIGCYLC 354
>gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional.
Length = 636
Score = 59.6 bits (145), Expect = 5e-09
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 37/199 (18%)
Query: 705 NIVTDYKPAVFAS------SLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKI 758
+ Y V S SL D+ L +F F NTG ET+ + ++
Sbjct: 237 GVAEKYNLPVSVSFSGGKDSLVVLDLAREAL---KDFKA--FFNNTGLEFPETVENVKEV 291
Query: 759 YLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQ--------MRKKCCYIRKVKPLKKA 810
+Y I++ I + +AF+ +V+ R CC + K+ P+ +A
Sbjct: 292 --AEEYGIEL-----------IEADAGDAFWRAVEKFGPPARDYRW-CCKVCKLGPITRA 337
Query: 811 LIGN--KSWIT--GQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYN 866
+ N K +T GQR+ +S +R+ ++ I +P+ +W ++W YI
Sbjct: 338 IKENFPKGCLTFVGQRKYESFSRAKSPRVWRNPWVPNQIGASPIQDWTALEVWLYIFWRK 397
Query: 867 VPYNTLYDNGYLSIGCEPC 885
+PYN LY+ G+ IGC C
Sbjct: 398 LPYNPLYERGFDRIGCWLC 416
>gnl|CDD|237509 PRK13794, PRK13794, hypothetical protein; Provisional.
Length = 479
Score = 52.4 bits (126), Expect = 7e-07
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 798 CCYIRKVKPLKKALIGNK------SWITGQRRTQSITRSNLVLKEKDIIHNGIIKFN--- 848
C + K++PL K LI K S++ GQR+ +S RS K+ I N IK
Sbjct: 329 CSEVCKLEPLGK-LIDEKYEGECLSFV-GQRKYESFNRS----KKPRIWRNPYIKKQILA 382
Query: 849 -PLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPC 885
P+ +W +W Y+ PYN LY+ G+ IGC C
Sbjct: 383 APILHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMC 420
>gnl|CDD|131958 TIGR02912, sulfite_red_C, sulfite reductase, subunit C. Members of
this protein family include the C subunit, one of three
subunits, of the anaerobic sulfite reductase of
Salmonella, and close homologs from various Clostridum
species, where the three-gene neighborhood is preserved.
Two such gene clusters are found in Clostridium
perfringens, but it may be that these sets of genes
correspond to the distinct assimilatory and
dissimilatory forms as seen in Clostridium pasteurianum.
Note that any one of these enzymes may have secondary
substates such as NH2OH, SeO3(2-), and SO3(2-).
Heterologous expression of the anaerobic sulfite
reductase of Salmonella confers on Escherichia coli the
ability to produce hydrogen sulfide gas from sulfite
[Central intermediary metabolism, Sulfur metabolism].
Length = 314
Score = 41.4 bits (97), Expect = 0.001
Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 325 NTKKHKINGYIIVI---LSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVL 381
NTK K N + + + R+ + G + ++ ++ + N+A+ Y ++ +T Q +
Sbjct: 3 NTKALKKNAFRVTKVRGKTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEI 62
Query: 382 SDVTKDNLFNLWTEIKQYGLSESNINLLT-----------DIICCPGGDFCSLANTKSLP 430
+ +++ + + Q + IN +I C G C AN +
Sbjct: 63 PGIRFEDIDEV-NKALQPIIEGLEINQEDVQKGYSASGTRNITACIGNRVCPFANYDTTK 121
Query: 431 IAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIGNIGILGLNK 476
AK I K +D + + ++GC N C + + GI+G+ +
Sbjct: 122 FAKRIEKAVFPNDYH----VKIALTGCPNDCAKARMHDFGIIGMTE 163
Score = 39.1 bits (91), Expect = 0.007
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 53 MLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLA--- 109
+R+ +P G+L +K + +L IA+ Y H TTRQ + I+ ++ ++ + L
Sbjct: 22 AIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKALQPII 81
Query: 110 ---SVEMHAIQT--SGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPR 164
+ +Q S + RNIT+ + V DT +A+ + + P
Sbjct: 82 EGLEINQEDVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEK--AVFPN----DY 135
Query: 165 KFKISISGSQEDRAAIFVHDIGL 187
KI+++G D A +HD G+
Sbjct: 136 HVKIALTGCPNDCAKARMHDFGI 158
>gnl|CDD|131121 TIGR02066, dsrB, sulfite reductase, dissimilatory-type beta
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction. It
remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers of
either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster prosthetic
center. Found in sulfate-reducing bacteria, these genes
are commonly located in an unidirectional gene cluster.
This model describes the beta subunit of sulfite
reductase [Central intermediary metabolism, Sulfur
metabolism].
Length = 341
Score = 39.4 bits (92), Expect = 0.006
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 359 IANLADHYSFSELRVTHTQNI--VLSDVTK-----DNLFNLWTEIKQYGLSESNINLLTD 411
+ ++AD YS LR T N+ ++SD +K D L + + G + + +
Sbjct: 49 LCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDELEEVGFPVGGTGDA-----VKGN 103
Query: 412 IICCPGGDFCSLANTKSLPIAKNIM----KYFSKDDQRNIGKISLNISGCINSCGHHHIG 467
I+ G C + + I K +M +YF+ D + + +++S C N CG H
Sbjct: 104 IVHTQGWLHCHIPAIDASGIVKAVMDELYEYFT--DHKLPAMVRISLSCCANMCGGVHAS 161
Query: 468 NIGILGL 474
+I I+G+
Sbjct: 162 DIAIVGI 168
Score = 34.4 bits (79), Expect = 0.23
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 33/162 (20%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENL--- 108
Y ++ P +LS +R L IA KY Y +T R N++F + +++ L
Sbjct: 31 YTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDELEEV 89
Query: 109 --------ASVEMHAIQTSGNCIRNITSDELSGVS---FDEIIDTRPYAEILRQWSTFHP 157
+V+ + + T G +I + + SG+ DE+
Sbjct: 90 GFPVGGTGDAVKGNIVHTQGWLHCHIPAIDASGIVKAVMDELY----------------E 133
Query: 158 EF--AYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKI 197
F LP +IS+S + DI + I K KI
Sbjct: 134 YFTDHKLPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKI 175
>gnl|CDD|226478 COG3969, COG3969, Predicted phosphoadenosine phosphosulfate
sulfotransferase [General function prediction only].
Length = 407
Score = 39.7 bits (93), Expect = 0.007
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 24/122 (19%)
Query: 770 YPLNSEVNNYIF-KNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSIT 828
++ + F + G+ F + V ++ + +P L+G R +S+
Sbjct: 129 QVAITDPAFFPFYRYGMT-FEEFV--PAFAAWLSQKRPATAVLVGI-------RADESLN 178
Query: 829 RSNLVLKEK------------DIIHNG-IIKFNPLYNWLEKDIWNYINTYNVPYNTLYDN 875
R N + +++ I NG + F P+Y+W +DIW ++ YN LYD
Sbjct: 179 RFNAIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLYDL 238
Query: 876 GY 877
Y
Sbjct: 239 MY 240
>gnl|CDD|131094 TIGR02039, CysD, sulfate adenylyltransferase, small subunit.
Metabolic assimilation of sulfur from inorganic sulfate,
requires sulfate activation by coupling to a nucleoside,
for the production of high-energy nucleoside
phosphosulfates. This pathway appears to be similar in
all prokaryotic organisms. Activation is first achieved
through sulfation of sulfate with ATP by sulfate
adenylyltransferase (ATP sulfurylase) to produce
5'-phosphosulfate (APS), coupled by GTP hydrolysis.
Subsequently, APS is phosphorylated by an APS kinase to
produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In
Escherichia coli, ATP sulfurylase is a heterodimer
composed of two subunits encoded by cysD and cysN, with
APS kinase encoded by cysC. These genes are located in a
unidirectionally transcribed gene cluster, and have been
shown to be required for the synthesis of
sulfur-containing amino acids. Homologous to this E.coli
activation pathway are nodPQH gene products found among
members of the Rhizobiaceae family. These gene products
have been shown to exhibit ATP sulfurase and APS kinase
activity, yet are involved in Nod factor sulfation, and
sulfation of other macromolecules [Central intermediary
metabolism, Sulfur metabolism].
Length = 294
Score = 36.6 bits (85), Expect = 0.044
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 849 PLYNWLEKDIWNYINTYNVPYNTLY 873
PL NW E DIW YI N+P LY
Sbjct: 177 PLSNWTELDIWRYIAAENIPIVPLY 201
>gnl|CDD|237138 PRK12563, PRK12563, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 312
Score = 36.7 bits (85), Expect = 0.051
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 849 PLYNWLEKDIWNYINTYNVPYNTLY 873
PL NW E D+W YI +P LY
Sbjct: 195 PLSNWTELDVWQYIAREKIPLVPLY 219
>gnl|CDD|235375 PRK05253, PRK05253, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 301
Score = 35.1 bits (82), Expect = 0.14
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 32/74 (43%)
Query: 849 PLYNWLEKDIWNYINTYNVPYNTLY---------DNGYL--------------------- 878
PL NW E DIW YI N+P LY +G L
Sbjct: 185 PLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVVEERMVR 244
Query: 879 --SIGCEPCTRPTE 890
++GC PCT E
Sbjct: 245 FRTLGCYPCTGAVE 258
>gnl|CDD|236300 PRK08576, PRK08576, hypothetical protein; Provisional.
Length = 438
Score = 33.1 bits (76), Expect = 0.68
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 799 CYIRKVKPLKKAL--IGNKSWITGQRRTQSITRS--NLVLKEKDIIHNGIIKFNPLYNWL 854
C KV+ L++A+ + + + G R +S R V++ K ++ P+ W
Sbjct: 314 CTKLKVEALEEAIRELEDGLLVVGDRDGESARRRLRPPVVERKTNFGKILVVM-PIKFWS 372
Query: 855 EKDIWNYINTYNVPYNTLYDNGYLSIGCEPC 885
+ YI + N LY G+ +GC C
Sbjct: 373 GAMVQLYILMNGLELNPLYYKGFYRLGCYIC 403
>gnl|CDD|233704 TIGR02064, dsrA, sulfite reductase, dissimilatory-type alpha
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction. It
remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers of
either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster prosthetic
center. Found in sulfate-reducing bacteria, these genes
are commonly located in an unidirectional gene cluster.
This model describes the alpha subunit of sulfite
reductase [Central intermediary metabolism, Sulfur
metabolism].
Length = 402
Score = 30.6 bits (69), Expect = 3.7
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 9/127 (7%)
Query: 343 RINMAPGD-ITSEQMNFIANLADHYSFSELRVTH--TQNIVLSDVTKDNLFNLWTEIKQY 399
R+ G +++ + + ++ + Y S L H T +IV L ++ E+
Sbjct: 85 RVAQPSGKFYSTDYLRQLCDVWEKYG-SGLTNFHGQTGDIVFLGTQTPQLQEIFEELTNL 143
Query: 400 G--LSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNI--GKISLNIS 455
G L S NL T C G C A +L + + + R K S
Sbjct: 144 GTDLGGSGSNLRT-PESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFPYKFKFKFS 202
Query: 456 GCINSCG 462
GC N C
Sbjct: 203 GCPNDCV 209
>gnl|CDD|183150 PRK11468, PRK11468, dihydroxyacetone kinase subunit DhaK;
Provisional.
Length = 356
Score = 30.0 bits (68), Expect = 5.9
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 124 RNITS-DELSGVSFDEIIDTRPYAEILRQW 152
R +S D+ FD +++ Y LR W
Sbjct: 226 RPFSSLDQTVDEMFDTLLENGSYHRTLRFW 255
>gnl|CDD|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD).
ChiD, a chitinase found in Bacillus circulans,
hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine
in chitin and chitodextrins. The domain architecture of
ChiD includes a catalytic glycosyl hydrolase family 18
(GH18) domain, a chitin-binding domain, and a
fibronectin type III domain. The chitin-binding and
fibronectin type III domains are located either
N-terminal or C-terminal to the catalytic domain. This
family includes exochitinase Chi36 from Bacillus cereus.
Length = 312
Score = 29.6 bits (67), Expect = 7.2
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 582 IGIWINSDEYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNL 628
+G W N D + + L P ++ VI + F + T G + +N
Sbjct: 4 VGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNN 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,212,395
Number of extensions: 4936253
Number of successful extensions: 4717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4625
Number of HSP's successfully gapped: 94
Length of query: 928
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 822
Effective length of database: 6,236,078
Effective search space: 5126056116
Effective search space used: 5126056116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.4 bits)