RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3753
(928 letters)
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
heme, electron transport, oxidoreductase; HET: SRM;
2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
d.134.1.1 d.134.1.1
Length = 608
Score = 609 bits (1572), Expect = 0.0
Identities = 118/530 (22%), Positives = 228/530 (43%), Gaps = 53/530 (10%)
Query: 5 DKYDHQLVKERVIQYRDQVRRRLSNELSEEEFIVLRLQ-NGLYLQR----YAYMLRIAIP 59
+++ + + ++ I +RL+ GL+ +R +M+R+ +P
Sbjct: 100 KDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLP 159
Query: 60 YGMLSSKQMRMLSYIAKKYDRN-YGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQT 118
G+ +S+Q R L+ + KKY ++ TTRQN Q + L + P+I++ L SV + ++Q+
Sbjct: 160 NGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGLTSLQS 219
Query: 119 SGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPE----FAYLPRKFKISISGSQ 174
+ +RN + L+G+ EI+DTRP+ ++ Q+ T + LPRK+ + GS
Sbjct: 220 GMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSH 279
Query: 175 EDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPI-IGQIICKFLPWKHILTYIEAI 233
+ ++D+ GK GF ++VGG + ++ + ++ +A+
Sbjct: 280 DLYEHPHINDLAYMPATKN-GKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAM 338
Query: 234 LRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYF 293
L + G R N K R+ L+ +G+E F+ +V + + L+R
Sbjct: 339 LEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRM----------PEQVLERASSEE 388
Query: 294 ITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITS 353
+ K++E + K G V L + G + +
Sbjct: 389 LVQ-------------------KDWERREYLGVHPQKQQGLSFVGLHIP-----VGRLQA 424
Query: 354 EQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTE-IKQYGLSESNINLLTDI 412
++M +A +AD Y ELR+T QNI++ +V + +L E + + S L+ +
Sbjct: 425 DEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPEPPILMKGL 484
Query: 413 ICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIGNIGIL 472
+ C G FC A ++ A + + + + ++ +GC NSCG + +IG +
Sbjct: 485 VACTGSQFCGQAIIETKARALKVTEEV-QRLVSVTRPVRMHWTGCPNSCGQVQVADIGFM 543
Query: 473 GL-----NKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRIL 517
G N E + +GG G+ + G I + + ++ IL
Sbjct: 544 GCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEIL 593
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein,
oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB:
3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A*
3b0j_A* 3b0l_A* 3b0h_A*
Length = 591
Score = 600 bits (1550), Expect = 0.0
Identities = 120/533 (22%), Positives = 234/533 (43%), Gaps = 53/533 (9%)
Query: 7 YDHQLVKERVIQYRDQVRRRL-SNELSEEEFIVLRLQNGLYLQR----YAYMLRIAIPYG 61
++ + + + ++L++++ V GL+ +R +M+R+ +P G
Sbjct: 85 PMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNG 144
Query: 62 MLSSKQMRMLSYIAKKYDRN-YGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSG 120
+ +S Q R L+ + +KY + TTRQN Q + L + P+IL+ LA V + ++Q+
Sbjct: 145 VTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGM 204
Query: 121 NCIRNITSDELSGVSFDEIIDTRPYAEILRQW----STFHPEFAYLPRKFKISISGSQED 176
+ +RN + L+G+ +EI+DTRPY +L Q+ S +P + LPRK+ + GS +
Sbjct: 205 DNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDL 264
Query: 177 RAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTP-IIGQIICKFLPWKHILTYIEAILR 235
++D+ G+ GF ++VGG + ++P ++ AIL
Sbjct: 265 YEHPHINDLAYMPATKD-GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILE 323
Query: 236 IYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFIT 295
+ G R N K R+ L+ +G+E F+ +V + + L+R +
Sbjct: 324 AFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQ----------LERASPEDLV 373
Query: 296 PKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQ 355
K++E + K GY + L + G + ++
Sbjct: 374 Q-------------------KQWERRDYLGVHPQKQEGYSFIGLHIP-----VGRVQADD 409
Query: 356 MNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICC 415
M+ +A LAD Y E+R+T QNI++ ++ + L E S L+ ++ C
Sbjct: 410 MDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVAC 469
Query: 416 PGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIGNIGILGL- 474
G FC A ++ + I + + + ++ +GC N+C + +IG +G
Sbjct: 470 TGNQFCGQAIIETKARSLKITEEV-QRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCL 528
Query: 475 --NKNGN--EYFQILIGGSQGNKLNFGKIIGPSFSADQ-VPDIINRILKVYLR 522
+KNG E + +GG G+ + G++ + D VP +++ ++ +
Sbjct: 529 TRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGA 581
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite,
siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in
europe; HET: SRM; 2.80A {Mycobacterium tuberculosis}
SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB:
1zj9_A*
Length = 566
Score = 535 bits (1379), Expect = 0.0
Identities = 122/538 (22%), Positives = 230/538 (42%), Gaps = 62/538 (11%)
Query: 1 MYHYDKYDHQLVKERVIQYR-----DQVRRRLSNELSEEEFIVLRLQNGLYLQRYAYMLR 55
+Y +D + ++R Q + + ++ N L+ +M+R
Sbjct: 56 IYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDD-------NIDKLEAKYFMMR 108
Query: 56 IAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHA 115
+ G LS+ +R L I+ ++ R+ + RQN+Q++WI+++ P+I L V +
Sbjct: 109 VRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQT 168
Query: 116 IQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQE 175
+ G+C R + L+G S DE++D E + + P+FA LPRK+K +ISG
Sbjct: 169 TEACGDCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGL-- 226
Query: 176 DRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILR 235
A ++D+ + + G + VGGG+ P++ Q + ++P + A+
Sbjct: 227 QDVAHEINDVAFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTS 286
Query: 236 IYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFIT 295
++ YG R K+R+K L+K GI F+ + E+ LKR
Sbjct: 287 VFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEY--------------LKRPLIDGPA 332
Query: 296 PKYKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQ 355
P E KH + NG V ++ G ++
Sbjct: 333 P-------------EPVKHPIDHVGVQRL------KNGLNAVGVAPI-----AGRVSGTI 368
Query: 356 MNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICC 415
+ +A+L +R T Q +V+ D+ L +L + GL + +++ C
Sbjct: 369 LTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRPSHWRRNLMAC 428
Query: 416 PGGDFCSLANTKSLPIAKNIMKY----FSKDDQRNIGKISLNISGCINSCGHHHIGNIGI 471
G +FC L+ ++ A++++ + + I++NI+GC NSC I +IG
Sbjct: 429 SGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQIADIGF 488
Query: 472 LG-----LNKNGNEYFQILIGGSQGNKLNFG-KIIGPSFSADQVPDIINRILKVYLRR 523
G + E FQ+ +GG G FG K+ ++D++ D I+R+++ +++
Sbjct: 489 KGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNFVKH 546
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme,
[4Fe-4S], snirr, six-electron REDU phosphate complex;
HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1
d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A*
3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A*
7gep_A* 8gep_A*
Length = 497
Score = 507 bits (1308), Expect = e-171
Identities = 93/505 (18%), Positives = 193/505 (38%), Gaps = 72/505 (14%)
Query: 49 RYAYMLRIAIPYGMLSSKQMRMLSYIAKKY-DRNYGHFTTRQNIQFNWIKLKESPDILEN 107
R+A +LR +P G++++KQ + + A + T RQ QF+ I K + +
Sbjct: 4 RHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQM 63
Query: 108 LASVEMHAIQTSGNCIRNI--TSDELSGVSFDEIID------------TRPYAEILRQWS 153
L SV + A+ T+ + RN+ TS+ E + TR YAEI
Sbjct: 64 LHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQE 123
Query: 154 TFH-------PEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGG 206
YLPRKFK ++ ++ + +D+ AI +GF ++VGGG
Sbjct: 124 KVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGG 183
Query: 207 MG------RTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGI 260
+ +T +LP +H L EA++ +G R + ++ K L+ +G+
Sbjct: 184 LSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGV 243
Query: 261 ENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFEN 320
E F+ +V + + ++ Y T +
Sbjct: 244 ETFKAEVERRAG-----------IKFEPIRPYEFT------------------GRGDRIG 274
Query: 321 WVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIV 380
WV ++ + + RI P + +A + + R+T QN++
Sbjct: 275 WVKGIDDNW----HLTLFIENGRILDYPARPLKTGL---LEIAKIHK-GDFRITANQNLI 326
Query: 381 LSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYF- 439
++ V + + K+ GL + + + C C LA ++ + +
Sbjct: 327 IAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNID 386
Query: 440 SKDDQRNIGK--ISLNISGCINSCGHHHIGNIGILGLNKNGNEYFQILIGGSQGNKLNFG 497
+ + + I + ++GC N CG + +G++G + + +GG++
Sbjct: 387 NLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVG---KAPGRYNLHLGGNRIGT-RIP 442
Query: 498 KIIGPSFSADQVPDIINRILKVYLR 522
++ + + ++ ++ ++ + +
Sbjct: 443 RMYKENITEPEILASLDELIGRWAK 467
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 249 bits (638), Expect = 1e-76
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 10/206 (4%)
Query: 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYY 770
V +SS + V L+ + DI + +TG L ET ++++ K +KVY
Sbjct: 46 GEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYR 105
Query: 771 PLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNK--SWITGQRRTQSIT 828
S + + V+ +K I KV+P+ +AL +W G RR QS +
Sbjct: 106 ATESAA--WQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGS 163
Query: 829 RSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGCEPCTRP 888
R+NL + G+ K P+ +W + I+ Y+ + + Y+ L+D GYLS+G TR
Sbjct: 164 RANLPVLAIQ---RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRK 220
Query: 889 TEKGKDIRSGRWWWENSNIKECGLHV 914
E G R++ +ECGLH
Sbjct: 221 WEPGMAEEETRFFGLK---RECGLHE 243
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide
binding, thiosulfonate intermediate, oxidoreductase;
HET: ADX; 2.70A {Pseudomonas aeruginosa}
Length = 275
Score = 231 bits (590), Expect = 1e-69
Identities = 87/223 (39%), Positives = 128/223 (57%), Gaps = 7/223 (3%)
Query: 697 KTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLN 756
K+ D L + ++ S AED+VL D+ + N ++ +F+L+TGRLH ET ++
Sbjct: 40 KSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFID 99
Query: 757 KIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKS 816
++ Y I V P + + + G+ +FY +CC IRK++PLK+ L G ++
Sbjct: 100 QVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRD--GHGECCGIRKIEPLKRKLAGVRA 157
Query: 817 WITGQRRTQS-ITRSNLVLKEKDIIH----NGIIKFNPLYNWLEKDIWNYINTYNVPYNT 871
W TGQRR QS TRS + + E D + KFNPL + +++W YI +PYN+
Sbjct: 158 WATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNS 217
Query: 872 LYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHV 914
L++ GY+SIGCEPCTRP + R GRWWWE + KECGLH
Sbjct: 218 LHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHA 260
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS
reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 228 bits (582), Expect = 1e-68
Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 14/229 (6%)
Query: 697 KTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDIN---IFTLNTGRLHSETLN 753
+T + + + + ++ +V D++ + + + ++T +TL
Sbjct: 28 ETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLT 87
Query: 754 MLNKI----YLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKK 809
+ N+I Y I VY P E + ++ + Y+ KV+P +
Sbjct: 88 LKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDK--YDYLAKVEPAHR 145
Query: 810 ALIGN--KSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNV 867
A + TG+R++Q RS L + E D ++ GI+K NPL NW + + YI+ NV
Sbjct: 146 AYKELHISAVFTGRRKSQGSARSQLSIIEIDELN-GILKINPLINWTFEQVKQYIDANNV 204
Query: 868 PYNTLYDNGYLSIGCEPCTRPTEKGKDIRSGRWWWENSNIKECGLHVLD 916
PYN L D GY SIG T+P ++G+D R+GRW + ECG+H
Sbjct: 205 PYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGKAK--TECGIHEAS 251
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 199 bits (508), Expect = 9e-59
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 711 KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYY 770
V +SS + V L+ + DI + +TG L ET ++++ K +KVY
Sbjct: 45 GEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYR 104
Query: 771 PLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNK--SWITGQRRTQSIT 828
S + V+ +K I KV+P+ +AL +W G RR QS +
Sbjct: 105 ATESAAWQE--ARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGS 162
Query: 829 RSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGC 882
R+NL + G+ K P+ +W + I+ Y+ + + Y+ L+D GYLS+G
Sbjct: 163 RANLPVLAIQ---RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGD 213
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 142 bits (359), Expect = 9e-38
Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 6/219 (2%)
Query: 701 DALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFD-INIFTLNTGRLHSETLNMLNKIY 759
+ F+ + + VL L L ++ I N+ + ++
Sbjct: 44 EIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLP 103
Query: 760 LTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWIT 819
+ + + + L + V + ++ + Q + K ++ +
Sbjct: 104 TVFIDQEETFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVI 163
Query: 820 GQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLS 879
G R T + ++ D ++ PL +W +IW+++ N P LY G+ S
Sbjct: 164 GIRHTDPFGEALKPIQRTDSNWPDFMRLQPLLHWDLTNIWSFLLYSNEPICGLYGKGFTS 223
Query: 880 IGCEPCTRPTEK-----GKDIRSGRWWWENSNIKECGLH 913
IG + P W ++ K+
Sbjct: 224 IGGINNSLPNPHLRKDSNNPALHFEWEIIHAFGKDAEGE 262
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 129 bits (325), Expect = 3e-33
Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 10/221 (4%)
Query: 701 DALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYL 760
+ F+ + + VL L L ++ I L+ + +
Sbjct: 49 ETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLP 108
Query: 761 TYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRK--VKPLKKALIGNKSWI 818
T + + N+I + + + + C + + K+ +
Sbjct: 109 TVFIDHDDTFK---TLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIV 165
Query: 819 TGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYL 878
G R T +++ D + PL +W +IW+++ N P LY G+
Sbjct: 166 IGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFT 225
Query: 879 SIGCEPCTRPT-----EKGKDIRSGRWWWENSNIKECGLHV 914
S+G T P +K + WE N +
Sbjct: 226 SLGNVEETLPNPHLRKDKNSTPLKLNFEWEIENRYKHNEVT 266
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 1e-11
Identities = 110/713 (15%), Positives = 206/713 (28%), Gaps = 216/713 (30%)
Query: 239 QYGRRDNIYKSRIKILLKSIGIENFQFQ-VNEEWKNIKNGPSTLTLEELKRVKKYFITPK 297
+ G YK + + + ++NF + V + K+I L+ EE+
Sbjct: 10 ETGEHQYQYKDILSVFEDAF-VDNFDCKDVQDMPKSI------LSKEEIDH--------- 53
Query: 298 YKTLPKNSIILKEKCKHNKEFENWVHQNTKKHKING--YIIVILSLKRINMAPGDITSEQ 355
I+ K ++G + L K+ M Q
Sbjct: 54 ---------IIMSK-----------------DAVSGTLRLFWTLLSKQEEMV-------Q 80
Query: 356 MNFIANLADHYSFSELRVTHTQNIVLSDVTK------DNLFNLWTEIKQYGLS-ESNINL 408
L +Y F + T+ S +T+ D L+N +Y +S
Sbjct: 81 KFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 409 LTDIICCPGGDFCSLANTKSLPIAKNI----MKYFSKDDQRNIGKISLNISGCINSCGHH 464
L + L AKN+ + GK + + C++
Sbjct: 140 LRQAL-------------LELRPAKNVLIDGVL--------GSGKTWVALDVCLSYKVQC 178
Query: 465 HIGNIGILGLN-KNGNEYFQILIGGSQGNKLNFGKIIGPSFSA--DQVPDIINRI--LKV 519
+ I LN KN N +L KL + I P++++ D +I RI ++
Sbjct: 179 KMDF-KIFWLNLKNCNSPETVLE---MLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 520 YLRRCYLMCKIIKNDTIVNDN-W------------KML----YEN--DFIEENV--KLLE 558
LRR L K +N +V N K+L ++ DF+ +
Sbjct: 233 ELRR-LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 559 DHVIVPF------KFLKKYLKFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQFKVIAIN 612
DH + L KYL + E VL NP++ +IA +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYL------------DCRPQDLPRE---VLTTNPRRLSIIAES 336
Query: 613 FIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQDQLFYMKRVGFNSFVI-RHDKNINSA 671
N K I L R F+ + +I +
Sbjct: 337 IRDGLATWDNWKHVNC-DKLT-----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 672 LHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKPAVFASSLAAED-----MVL 726
L L++ S + +N K SL + + +
Sbjct: 391 L--LSLIWFDVIKSDVMVV-VNKLHK-------------------YSLVEKQPKESTISI 428
Query: 727 TDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYPLNS----EVNNYIFK 782
+ L ++ + N LH ++ Y I + + ++ Y +
Sbjct: 429 PSIYL----ELKVKLENEYALHRSIVD---------HYNIPKTFDSDDLIPPYLDQYFY- 474
Query: 783 NGINAFYDSVQMRKKCCYIRKVKPLKKALIGNKSWI------TGQRRTQSITRSNLVLKE 836
+ + K + ++ + + + ++ S + N L++
Sbjct: 475 -----SHIGHHL-KNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNT-LQQ 526
Query: 837 KDIIHNGIIKFNPLYNWLEKDIWNYI-----NTYNVPYNTL------YDNGYL 878
I +P Y L I +++ N Y L ++ +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 58.3 bits (140), Expect = 1e-08
Identities = 103/613 (16%), Positives = 187/613 (30%), Gaps = 202/613 (32%)
Query: 2 YHYDKYDHQLVKERVIQYRDQVRRRLSNELSEEEFI---VLRLQNGLYLQRYAYMLR--- 55
++ ++ I+ RD RL N + F V RLQ L L++ LR
Sbjct: 98 IKTEQRQPSMMTRMYIEQRD----RLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 56 -IAIPYGMLSS-KQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEM 113
+ I G+L S K +++A +Y + + + W+
Sbjct: 152 NVLI-DGVLGSGK-----TWVALDVCLSYK-VQCKMDFKIFWL----------------- 187
Query: 114 HAIQTSGNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGS 173
NC P + + + + S
Sbjct: 188 ----NLKNC-------------------NSPETVLEMLQKLLY----QIDPNWTSRSDHS 220
Query: 174 QEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAI 233
+ + + +I+ +L ++ + + +
Sbjct: 221 SNIK-------LRIHSIQAELRRL----------------------LKSKPYENCLL--V 249
Query: 234 LRIYNQYGRRDNIYKSRI--------KILLKSIGIENFQFQVNEEWKNI--KNGPSTLTL 283
L N+ ++ KILL + + F +I + TLT
Sbjct: 250 L---------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 284 EELKRVKKYFITPKYKTLPKN---------SIILKEKCKHNKEFENWVHQNTKKHKINGY 334
+E+K + ++ + + LP+ SII + ++NW H N K
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT---- 356
Query: 335 IIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRV----THTQNIVLS----DVTK 386
I+ SL + P + +M F L V H I+LS DV K
Sbjct: 357 TIIESSLNVLE--PAEY--RKM-----------FDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 387 DNLFNLWTEIKQYGLSESNINLLT----DIICCPGGDF-CSLANTKSL---PIAK-NIMK 437
++ + ++ +Y L E T I + L N +L + NI K
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYL----ELKVKLENEYALHRSIVDHYNIPK 457
Query: 438 YFSKDDQRNIGKISLNISGCINSCGH--HHIGNIGILGLNKNGNEYFQILIGGSQGNKLN 495
F DD I + H HH+ NI + + + L+
Sbjct: 458 TFDSDD-----LIPPYLDQYF--YSHIGHHLKNI---EHPERMTLFRMVF--------LD 499
Query: 496 FG----KIIGPSFSADQVPDIINRI--LKVYLRRCYLMCKIIKNDTIVNDNWKMLYENDF 549
F KI S + + I+N + LK Y I ND +++
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY------ICDND---PKYERLVNA--- 547
Query: 550 IEENVKLLEDHVI 562
I + + +E+++I
Sbjct: 548 ILDFLPKIEENLI 560
Score = 57.9 bits (139), Expect = 1e-08
Identities = 66/390 (16%), Positives = 124/390 (31%), Gaps = 112/390 (28%)
Query: 590 EYSEELKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDVLQ-DQ 648
+ + K +L K ++ I ++ K + + L K + + + +VL+ +
Sbjct: 37 DVQDMPKSILSK--EEIDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVLRINY 91
Query: 649 LFYMKRV---------GFNSFVIRHDKNINSALHGLNIFSEKYQTSADEKIPLNSFVKTV 699
F M + ++ + D+ N +F+ KY S + ++
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN----QVFA-KYNVSRLQPY---LKLRQA 143
Query: 700 LDAL--NNIVTDY------KPAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHS-- 749
L L V K + +A + V ++ D IF LN +S
Sbjct: 144 LLELRPAKNVLIDGVLGSGK-----TWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 750 ETLNMLNKIYLTYKYKI-KVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLK 808
L ML K+ Y+I + + +N + S+Q + + K KP +
Sbjct: 197 TVLEMLQKLL----YQIDPNWTSRSDHSSNIKLR------IHSIQAELR--RLLKSKPYE 244
Query: 809 KALIGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIK-FNP----LYNWLEKDIWNYIN 863
L LVL ++ + FN L K + ++++
Sbjct: 245 NCL--------------------LVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 864 TYNVPYNTLYDN----------GYLS--IGCEPCTRPTEK-----------GKDIRSG-- 898
+ +L + L + C P P E + IR G
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 899 RW-WWENSNIK------ECGLHVLDGKLIR 921
W W++ N E L+VL+ R
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 3e-09
Identities = 98/551 (17%), Positives = 151/551 (27%), Gaps = 204/551 (37%)
Query: 496 FGKIIGPSFSADQVPDI----INRILKVYLR---RCYLMCKIIKND--TIVNDNWKMLYE 546
GK +G + + V +++L + L CYL ND + K+L E
Sbjct: 61 VGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLE----GNDIHALAA---KLLQE 111
Query: 547 NDFIEENVKLLEDHVIVPFKFLKKYLKFNSNNNLNIGIWINSDEYSEELKCVLKKNPKQF 606
ND K L +K Y + S+ S + V
Sbjct: 112 NDTTLVKTKEL----------IKNY--ITARIMAKRPFDKKSN--SALFRAV---GEGNA 154
Query: 607 KVIAINFIKFTDGRGYSIAYNLRMKFNYTGELRAIGDV---LQDQLFYMKRVGFNSFVIR 663
+++AI F G+G + Y F ELR + L L + + R
Sbjct: 155 QLVAI----F-GGQGNTDDY-----FE---ELRDLYQTYHVLVGDLIKFSAETLSELI-R 200
Query: 664 HDKNINSAL-HGLNIFS----------EKYQTSADEKIPLNSFVKTVLDALNNIVT---- 708
+ GLNI + Y S PL V+ + +VT
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI----GVIQLAHYVVTAKLL 256
Query: 709 DYKPAVFASSLAAEDMVLTDLIL---------RNNFDINI-------FTLNTG-RLH--- 748
+ P S L L+ +F +++ F + G R +
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAY 314
Query: 749 ------------SETLN------MLNKIYLTYKY------KIKVYYPLNSEVNNYI-FKN 783
S N ML+ LT + K + P +V I N
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV--EISLVN 372
Query: 784 GINAFYDSV------QMRKKCCYIRKVKPLKKALIGNKSWITGQRRTQSITRSNLVLKEK 837
G V + +RK K A G Q R I S + K
Sbjct: 373 GAKNL---VVSGPPQSLYGLNLTLRKAK----APSG-----LDQSR---IPFS----ERK 413
Query: 838 DIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLY------------DNGYLSIGCEPC 885
N +F P+ P+++ +S +
Sbjct: 414 LKFSN---RFLPV---------------ASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 886 TRP---TEKGKDIRSG---------RW------WWENSNIKECGLHVLD---------GK 918
P T G D+R WE + + H+LD G
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA-THILDFGPGGASGLGV 514
Query: 919 LI-RIKSQKGI 928
L R K G+
Sbjct: 515 LTHRNKDGTGV 525
Score = 49.7 bits (118), Expect = 5e-06
Identities = 37/262 (14%), Positives = 66/262 (25%), Gaps = 78/262 (29%)
Query: 659 SFVIRHDK-----NINSALHGLNIFSEKYQTSADEKIPLNSFVKTVLDALNNIVTDYKP- 712
+ H + +A + ++ F K + + D +P
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFI------ASQLQEQ------FNKILPEPTEGFAADDEPT 55
Query: 713 ------AVF----ASSLAAEDMVLTDLILR---NNFDINIFTLNTGRLHSETLNMLN--- 756
F +S + + D +L F+ L +H+ +L
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQEND 113
Query: 757 KIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCY---------------I 801
+ K IK Y K +A + +V +
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 802 RKV----KPLKKALIGNKSWITGQRRTQSITRSNLVLKEKDIIHNGIIKFNPLYNWLEKD 857
R + L LI + R+ L + + G+ + WLE
Sbjct: 174 RDLYQTYHVLVGDLI-----KFSAETLSELIRT--TLDAEKVFTQGL----NILEWLE-- 220
Query: 858 IWNYINTYNVPYNTLYDNGYLS 879
N N P D YL
Sbjct: 221 -----NPSNTP-----DKDYLL 232
Score = 47.4 bits (112), Expect = 2e-05
Identities = 31/176 (17%), Positives = 51/176 (28%), Gaps = 67/176 (38%)
Query: 584 IWINSDEYSEE------LKCVLKKNPKQFKVIAINFIKFTDGRGYSIAYNLRMKFNYTGE 637
+W +D + ++ L V NP + F +G I N
Sbjct: 1645 VWNRADNHFKDTYGFSILDIV-INNPVNLTI------HFGGEKGKRIREN---------- 1687
Query: 638 LRAIGDVLQDQLFYMKRVGFNSFVIRHDKNINSALHGLNIFSEKYQTSADEKIPLNSFV- 696
Y + + ++ L IF E +E +F
Sbjct: 1688 -------------YSA--------MIFETIVDGKLKTEKIFKE-----INEHSTSYTFRS 1721
Query: 697 -KTVLDALNNIVTDY-KPAVFASSLAA-EDMVLTDLILRNNFDINIFTLNTGRLHS 749
K +L A T + +PA+ AA ED+ ++ I G HS
Sbjct: 1722 EKGLLSA-----TQFTQPALTLMEKAAFEDL-------KSKGLIPADATFAG--HS 1763
Score = 40.4 bits (94), Expect = 0.003
Identities = 38/259 (14%), Positives = 81/259 (31%), Gaps = 95/259 (36%)
Query: 63 LSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQTSGNC 122
K + +L +I + Y + + +I L++S + E + S M +I
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSI------LEDSLENNEGVPS-PMLSI------ 341
Query: 123 IRNITSDELSGVSFDEIID-TRPYAEILRQWSTFHPEFAYLPRKFKISIS---------- 171
N+T +++ + ++ T ++LP ++ IS
Sbjct: 342 -SNLTQEQV-----QDYVNKTN----------------SHLPAGKQVEISLVNGAKNLVV 379
Query: 172 -GSQEDRAAIFVHDIGLRAIKNKLG----KIGFCVIVGGGMGRTPIIGQIICKFLP---- 222
G + + + LR K G +I F R +FLP
Sbjct: 380 SGPPQSLYGLNLT---LRKAKAPSGLDQSRIPFS-------ERKLKFSN---RFLPVASP 426
Query: 223 -----------------WKHILTYIEAILRI--YNQYGRRD--NIYKSRIKILLKSIGIE 261
K+ +++ ++I Y+ + D + S + ++ I
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI--- 483
Query: 262 NFQFQVNEEWKNIKNGPST 280
+ V W+ +T
Sbjct: 484 -IRLPVK--WETTTQFKAT 499
Score = 38.9 bits (90), Expect = 0.009
Identities = 33/255 (12%), Positives = 76/255 (29%), Gaps = 84/255 (32%)
Query: 261 ENFQFQVNEEWKNIKNGPSTLTL----EELKRVKKYFITPKYKTLPKNSIILKEKCKHNK 316
+ + F + + + N P LT+ E+ KR+++ + ++T+ + + K
Sbjct: 1655 DTYGFSILDI---VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE------K 1705
Query: 317 EFENWVHQNTKKHKINGYI------------IVILS------LKRINMAPGDITSEQMNF 358
F+ +++++ + + ++ LK + P D
Sbjct: 1706 IFKE-INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD-------- 1756
Query: 359 IANLADH----YS----------FSE-LRVTH-----TQNIVLSDVTKDNLF-----NLW 393
A A H Y+ + V Q V D + + N
Sbjct: 1757 -ATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 394 TEIKQYGLSESNINLLTDIICCPGGDFCSLAN-------------TKSLPIAKNIMKYFS 440
S+ + + + + G + N ++L N++ +
Sbjct: 1816 RVAA--SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 441 KDDQRNIGKISLNIS 455
+ I I L S
Sbjct: 1874 L---QKIDIIELQKS 1885
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 55.5 bits (133), Expect = 3e-08
Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 37/205 (18%)
Query: 710 YKPAVFASSLAAEDMVLTDLILR----NNFDINIFTLNTGRLHSETLNMLNKIYLTYKYK 765
+ V S+ + V+ L + + ++T E +++
Sbjct: 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLD 105
Query: 766 IKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNK--SWITGQRR 823
+ + N GIN F K I K + LK+AL + + G RR
Sbjct: 106 LITHI------NPDGVAQGINPFTHG---SAKHTDIMKTEGLKQALDKHGFDAAFGGARR 156
Query: 824 TQSITRSNLV----------------------LKEKDIIHNGIIKFNPLYNWLEKDIWNY 861
+ +R+ + ++ I+ PL NW E DIW Y
Sbjct: 157 DEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQY 216
Query: 862 INTYNVPYNTLYDNGYLSIGCEPCT 886
I +P LY + + T
Sbjct: 217 IYLEGIPIVPLYFAAERDVIEKNGT 241
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Length = 386
Score = 55.4 bits (134), Expect = 4e-08
Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 10/137 (7%)
Query: 347 APGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNI 406
A +++ + +A + LR T NI ++ L L ++K + +
Sbjct: 69 AARLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADLKTRKFAAGSF 128
Query: 407 NL--------LTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNI--GKISLNISG 456
+++I+ G +C T + K +M ++ + ++++
Sbjct: 129 KFPIGGTGASISNIVHTQGWVYCHTPATDASGPVKAVMDELFEEFTSMRLPAIVRVSLAC 188
Query: 457 CINSCGHHHIGNIGILG 473
CIN CG H +IG++G
Sbjct: 189 CINMCGAVHCSDIGLVG 205
Score = 34.6 bits (80), Expect = 0.13
Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 35/154 (22%)
Query: 55 RIAIPYGML-SSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEM 113
+ L S+ +R IAKK+ + FTTR NI+F + ++ +L + +
Sbjct: 64 TVRCGAARLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADLKTRKF 123
Query: 114 HAIQT------SGNCIRNITS------------DELSGVSFDEIIDTRPYAEILRQWSTF 155
A +G I NI D V ++D
Sbjct: 124 AAGSFKFPIGGTGASISNIVHTQGWVYCHTPATDASGPV--KAVMD------------EL 169
Query: 156 HPEF--AYLPRKFKISISGSQEDRAAIFVHDIGL 187
EF LP ++S++ A+ DIGL
Sbjct: 170 FEEFTSMRLPAIVRVSLACCINMCGAVHCSDIGL 203
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET;
alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
{Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B*
3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Length = 366
Score = 52.7 bits (127), Expect = 3e-07
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 343 RINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQ---- 398
R ++ + + ++AD YS LR T N+ + + +L E+++
Sbjct: 55 RFGTPRL-LSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGF 113
Query: 399 ----YGLSESNINLLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNI--GKISL 452
+ L++I+ G C + I K +M + + +
Sbjct: 114 PCGGTWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLPAMCRI 173
Query: 453 NISGCINSCGHHHIGNIGILG 473
+++ C N CG H +I I+G
Sbjct: 174 SLACCANMCGAVHASDIAIVG 194
Score = 32.3 bits (74), Expect = 0.66
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 21/149 (14%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASV 111
Y++R P + S +R L IA KY Y +T+R N++F + D++ +
Sbjct: 52 YVVRFGTPRLL-SIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQER 110
Query: 112 EMHAIQTSGNCIRNITSDELSGVSFDEIIDTRPYA----------EILRQWS-TFHPEF- 159
+ + ++ I+ T+ + I++ + F
Sbjct: 111 VGFPCGGTWDAVK-------GEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFT 163
Query: 160 -AYLPRKFKISISGSQEDRAAIFVHDIGL 187
LP +IS++ A+ DI +
Sbjct: 164 DHKLPAMCRISLACCANMCGAVHASDIAI 192
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.0 bits (80), Expect = 0.057
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 18/47 (38%)
Query: 121 NC---IRNITSDELSG---------VSFDEIIDTRPYAEILRQWSTF 155
C I G V D+++DTR E W TF
Sbjct: 26 ECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRS--E----WRTF 66
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 32.8 bits (75), Expect = 0.55
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 26/96 (27%)
Query: 5 DKYDHQLVKERVIQYRDQVRRRLSNE--------------LSEEEFIVL----RLQNGLY 46
+ H+ + RD+ L E L E E +L L+ Y
Sbjct: 444 KDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLRED-Y 502
Query: 47 LQRYAYMLRIAIPYGMLSS--KQMRMLSYIAKKYDR 80
LQ+ A+ KQ+ M+ + YD+
Sbjct: 503 LQQDAFD-----EVDTYCPPEKQVTMMRVLLNFYDK 533
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A
{Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A
1usy_E* 1usy_H*
Length = 219
Score = 31.0 bits (71), Expect = 1.3
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 53 MLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQF 93
+L++AIP G L K M L ++R ++I
Sbjct: 2 LLKLAIPKGRLEEKVMTYLKKTGVIFERESSILREGKDIVC 42
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.7
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 11/34 (32%)
Query: 4 YDKYDHQLVKERVIQYRDQVRRRLSNELSEEEFI 37
+ Q+ K +++N ++++ F
Sbjct: 124 NQRQSEQVEK-----------NKINNRIADKAFY 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,637,521
Number of extensions: 922097
Number of successful extensions: 2151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2066
Number of HSP's successfully gapped: 52
Length of query: 928
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 826
Effective length of database: 3,853,851
Effective search space: 3183280926
Effective search space used: 3183280926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.3 bits)