RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3753
(928 letters)
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 166 bits (421), Expect = 4e-48
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 120 GNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAA 179
G+C R + L+G S DE++D E + + P+FA LPRK+K +ISG A
Sbjct: 1 GDCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGL--QDVA 58
Query: 180 IFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQ 239
++D+ + + G + VGGG+ P++ Q + ++P + A+ ++
Sbjct: 59 HEINDVAFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTSVFRD 118
Query: 240 YGRRDNIYKSRIKILLKSIGIENFQFQVNEEW--KNIKNGPST 280
YG R K+R+K L+K GI F+ + E+ + + +GP+
Sbjct: 119 YGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAP 161
Score = 66.2 bits (161), Expect = 3e-13
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 412 IICCPGGDFCSLANTKSLPIAKNIMKYFSKDD--QRNIGKISLNISGCINSCGHHHIGNI 469
++ P + I++ + K ISG + H I ++
Sbjct: 7 VLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGLQDVA--HEINDV 64
Query: 470 GILGLNKNGNEY-FQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLR 522
+G+N + + +GG + +G +VP++ + V+
Sbjct: 65 AFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTSVFRD 118
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 171
Score = 156 bits (395), Expect = 1e-44
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 6/155 (3%)
Query: 122 CIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHP----EFAYLPRKFKISISGSQEDR 177
+RN + L+G+ EI+DTRP+ ++ Q+ T + LPRK+ + GS +
Sbjct: 3 NVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLY 62
Query: 178 AAIFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTP-IIGQIICKFLPWKHILTYIEAILRI 236
++D+ K GK GF ++VGG + ++ + ++ +A+L
Sbjct: 63 EHPHINDLAYMPA-TKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEA 121
Query: 237 YNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEW 271
+ G R N K R+ L+ +G+E F+ +V +
Sbjct: 122 FRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRM 156
Score = 72.4 bits (177), Expect = 2e-15
Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 412 IICCP--GGDFCSLANTKSLPIAKNIMKYFSKDDQRN------IGKISLNISGCINSCGH 463
+ P G D + +T+ P I ++ + + + N K + + G + H
Sbjct: 7 PVGNPLAGIDPHEIVDTR--PFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEH 64
Query: 464 HHIGNIGILGLNKNGNEYFQILIGGSQG-NKLNFGKIIGPSFSADQVPDIINRILKVYLR 522
HI ++ + KNG F +L+GG + + SA+ V + +L+ +
Sbjct: 65 PHINDLAYMPATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRD 124
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
{Escherichia coli [TaxId: 562]}
Length = 215
Score = 144 bits (363), Expect = 1e-39
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 7/173 (4%)
Query: 712 PAVFASSLAAEDMVLTDLILRNNFDINIFTLNTGRLHSETLNMLNKIYLTYKYKIKVYYP 771
V +SS + V L+ + DI + +TG L ET ++++ K +KVY
Sbjct: 46 EYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRA 105
Query: 772 LNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPLKKALIGNK--SWITGQRRTQSITR 829
S + + V+ +K I KV+P+ +AL +W G RR QS +R
Sbjct: 106 TESAAWQEARYGKL--WEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSR 163
Query: 830 SNLVLKEKDIIHNGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGYLSIGC 882
+NL + G+ K P+ +W + I+ Y+ + + Y+ L+D GYLS+G
Sbjct: 164 ANLPVLAIQ---RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGD 213
>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein
(SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
Length = 197
Score = 120 bits (302), Expect = 1e-31
Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 29/176 (16%)
Query: 124 RNITSDELSGVSFDEIIDTRPYA----EILRQWSTFHPEF------------------AY 161
RN+ + + +A E L + + E Y
Sbjct: 5 RNVLCT-SNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTY 63
Query: 162 LPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMG------RTPIIGQ 215
LPRKFK ++ ++ + +D+ AI +GF ++VGGG+ +T
Sbjct: 64 LPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTA 123
Query: 216 IICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEEW 271
+LP +H L EA++ +G R + ++ K L+ +G+E F+ +V
Sbjct: 124 SEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRA 179
Score = 43.8 bits (103), Expect = 3e-05
Identities = 9/84 (10%), Positives = 23/84 (27%), Gaps = 7/84 (8%)
Query: 449 KISLNISGCINSCGHHHIGNIGILGLNKNGNE-YFQILIGGSQGNKLNFGKI------IG 501
K + + H ++ + + +NG F +L+GG + K
Sbjct: 67 KFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEF 126
Query: 502 PSFSADQVPDIINRILKVYLRRCY 525
+ + ++
Sbjct: 127 GYLPLEHTLAVAEAVVTTQRDWGN 150
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 126
Score = 100 bits (249), Expect = 2e-25
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 408 LLTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNIGKISLNISGCINSCGHHHIG 467
L+ ++ C G FC A ++ A + + + + ++ +GC NSCG +
Sbjct: 4 LMKGLVACTGSQFCGQAIIETKARALKVTEEV-QRLVSVTRPVRMHWTGCPNSCGQVQVA 62
Query: 468 NIGILGL-----NKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRIL 517
+IG +G N E + +GG G+ + G I + + ++ IL
Sbjct: 63 DIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEIL 117
Score = 84.7 bits (209), Expect = 4e-20
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 139 IIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIG 198
II+T+ A + + R ++ +G + V DIG +
Sbjct: 21 IIETKARALKVTEEVQRLVSV---TRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGK 77
Query: 199 ----FCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYG 241
V VGG +G +G I K +P K ++ + IL NQ+G
Sbjct: 78 PCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEIL--INQFG 122
>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 153
Score = 92.6 bits (230), Expect = 2e-22
Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 11 LVKERVIQYRDQVRRRLSNELSEEEFIVLRLQ-NGLYLQRYA----YMLRIAIPYGMLSS 65
+++ + + ++ I +RL+ GL+ +R +M+R+ +P G+ +S
Sbjct: 39 FIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTS 98
Query: 66 KQMRMLSYIAKKYDRN-YGHFTTRQNIQFNWIKLKESPDILENLASVEMHAIQT 118
+Q R L+ + KKY ++ TTRQN Q + L + P+I++ L SV + ++Q+
Sbjct: 99 EQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGLTSLQS 152
Score = 66.4 bits (162), Expect = 2e-13
Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 14/136 (10%)
Query: 268 NEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKCKHNKEFENWVHQNTK 327
E+ K K+ + + T + + K S K+ ++ H+
Sbjct: 26 AEKVKIEKDPMKLFIEDGIS----DLATLSMEEVDK-SKHNKDDIDVRLKWLGLFHR--- 77
Query: 328 KHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYS-FSELRVTHTQNIVLSDVTK 386
+ G ++ R+ + G TSEQ ++A++ Y VT QN + V
Sbjct: 78 RKHHYGRFMM-----RLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVL 132
Query: 387 DNLFNLWTEIKQYGLS 402
++ + ++ GL+
Sbjct: 133 PDVPEIIKGLESVGLT 148
>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein
(SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
Length = 145
Score = 90.4 bits (224), Expect = 8e-22
Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 411 DIICCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRNI---GKISLNISGCINSCGHHHIG 467
+ + C C LA ++ + + ++ I + ++GC N CG +
Sbjct: 5 NSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLA 64
Query: 468 NIGILGLNKNGNEYFQILIGGSQGNKLNFGKIIGPSFSADQVPDIINRILKVYLR 522
+G++G Y L G G + ++ + + ++ ++ ++ + +
Sbjct: 65 EVGLVGKAP--GRYNLHLGGNRIGTR--IPRMYKENITEPEILASLDELIGRWAK 115
Score = 52.7 bits (126), Expect = 1e-08
Identities = 8/102 (7%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 139 IIDTRPYA-EILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKI 197
+ + + + + + ++G + ++GL + G+
Sbjct: 19 MAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGL--VGKAPGRY 76
Query: 198 GFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQ 239
+ R I ++ + + IL ++ ++ + +
Sbjct: 77 NLHLGGNRIGTR---IPRMYKENITEPEILASLDELIGRWAK 115
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 152
Score = 85.8 bits (212), Expect = 3e-20
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 30/127 (23%)
Query: 23 VRRRLSNELSEEEF-------IVLRLQ-NGLYLQR-------------------YAYMLR 55
VR R+ N +++ F + R + GLY QR +M+R
Sbjct: 29 VRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMR 88
Query: 56 IAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASVEMHA 115
+ G LS+ +R L I+ ++ R+ + RQN+Q++WI+++ P+I L V +
Sbjct: 89 VRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQ- 147
Query: 116 IQTSGNC 122
T+ C
Sbjct: 148 --TTEAC 152
Score = 72.7 bits (178), Expect = 2e-15
Identities = 18/141 (12%), Positives = 51/141 (36%), Gaps = 16/141 (11%)
Query: 268 NEEWKNIKNGPSTLTLEELKRVKKYFITPKYKTLPKNSIILKEKC------KHNKEFENW 321
NEE K N L+ +R++ + + ++ K + + + + W
Sbjct: 17 NEELKKAGNP-----LDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTW 71
Query: 322 VHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVL 381
+ Y ++ R+ G +++ + + ++ ++ ++ QN+
Sbjct: 72 TGDDNIDKLEAKYFMM-----RVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQY 126
Query: 382 SDVTKDNLFNLWTEIKQYGLS 402
+ +N+ +W + GL
Sbjct: 127 HWIEVENVPEIWRRLDDVGLQ 147
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 87.0 bits (214), Expect = 7e-20
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 19/201 (9%)
Query: 692 LNSFVKTVLDALNNIVTDYKPAVFASSLAAEDMVLTDLILRNNF----DINIFTLNTGRL 747
L + + + ++ V S+ + V+ L + F + ++T
Sbjct: 8 LKQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWK 67
Query: 748 HSETLNMLNKIYLTYKYKIKVYYPLNSEVNNYIFKNGINAFYDSVQMRKKCCYIRKVKPL 807
E +++ + + + +A + + +
Sbjct: 68 FQEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGF 127
Query: 808 KKALIGNKSWITGQRRTQSITRSNLVLKEKDIIH---------------NGIIKFNPLYN 852
A G + R + + D + I+ PL N
Sbjct: 128 DAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSN 187
Query: 853 WLEKDIWNYINTYNVPYNTLY 873
W E DIW YI +P LY
Sbjct: 188 WTELDIWQYIYLEGIPIVPLY 208
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 65
Score = 80.1 bits (198), Expect = 3e-19
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 53 MLRIAIPYGMLSSKQMRMLSYIAKKYDRN-YGHFTTRQNIQFNWIKLKESPDILENLASV 111
+LR +P G++++KQ + + A + T RQ QF+ I K + + L SV
Sbjct: 1 LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSV 60
Query: 112 EMHAI 116
+ A+
Sbjct: 61 GLDAL 65
Score = 61.7 bits (150), Expect = 1e-12
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 343 RINMAPGDITSEQMNFIANLAD-HYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGL 401
R + G IT++Q I A + + +R+T+ Q + K N+ + + GL
Sbjct: 3 RCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGL 62
Query: 402 S 402
Sbjct: 63 D 63
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit
beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 119
Score = 81.9 bits (203), Expect = 3e-19
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASV 111
Y++R P +LS +R L IA KY Y +T+R N++F + D++ +
Sbjct: 49 YVVRFGTP-RLLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQER 107
Query: 112 EMHAIQTSGNCI 123
+ + +
Sbjct: 108 VGFPCGGTWDAV 119
Score = 32.2 bits (74), Expect = 0.073
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 348 PGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIK 397
P ++ + + ++AD YS LR T N+ + + +L E++
Sbjct: 56 PRLLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQ 105
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 85
Score = 79.8 bits (197), Expect = 7e-19
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 44 GLYLQRYA--YMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKES 101
G++ Q+ + + IP G L + +M L+ IA Y T QNI ++ +
Sbjct: 10 GVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKI 69
Query: 102 PDILENLASVEMH 114
+L E +
Sbjct: 70 DSLLNEPLLKERY 82
Score = 71.7 bits (176), Expect = 5e-16
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 316 KEFENWVHQNTKKHKINGYIIVILSLKRINMAPGDITSEQMNFIANLADHYSFSELRVTH 375
K++E + K G V +++ G + +++M +A +AD Y ELR+T
Sbjct: 1 KDWERREYLGVHPQKQQGLSFV-----GLHIPVGRLQADEMEELARIADVYGSGELRLTV 55
Query: 376 TQNIVLSDVTKDNLFNLWTE 395
QNI++ +V + +L E
Sbjct: 56 EQNIIIPNVENSKIDSLLNE 75
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 149
Score = 81.4 bits (200), Expect = 1e-18
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 411 DIICCPGGDFCSLANTKSLPIA----KNIMKYFSKDDQRNIGKISLNISGCINSCGHHHI 466
+++ C G +FC L+ ++ A + + + + I++NI+GC NSC I
Sbjct: 7 NLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQI 66
Query: 467 GNIGILGL-----NKNGNEYFQILIGGSQGNKLNFG-KIIGPSFSADQVPDIINRILKVY 520
+IG G + E FQ+ +GG G FG K+ ++D++ D I+R+++ +
Sbjct: 67 ADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNF 126
Query: 521 LRR 523
++
Sbjct: 127 VKH 129
Score = 70.2 bits (171), Expect = 1e-14
Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 11/133 (8%)
Query: 139 IIDTRPYAEIL--RQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGK 196
+TR A+ L + L ++I+G A I + DIG + G
Sbjct: 21 FAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGH 80
Query: 197 I----GFCVIVGGGMGRTPIIGQ-IICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRI 251
GF V +GG +G G+ + + + YI+ ++R + ++ R
Sbjct: 81 GGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNFVKHRSEGE----RF 136
Query: 252 KILLKSIGIENFQ 264
+ ++ +
Sbjct: 137 AQWVIRAEEDDLR 149
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 80
Score = 77.5 bits (191), Expect = 4e-18
Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 44 GLYLQR-YAYMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESP 102
G+ + + +A G +S + ++ + + + FT Q + I
Sbjct: 7 GVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLD 66
Query: 103 DILENLASVEMHA 115
D++ L ++ + +
Sbjct: 67 DLIAGLDALGLQS 79
Score = 66.7 bits (163), Expect = 2e-14
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 343 RINMAPGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLS 402
+ G ++ + +A+L +R T Q +V+ D+ L +L + GL
Sbjct: 19 GVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQ 78
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite
reductase subunit beta, DsrB {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 177
Score = 75.5 bits (185), Expect = 3e-16
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 409 LTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKD--DQRNIGKISLNISGCINSCGHHHI 466
+++I+ G C T + K IM +D R + ++++ CIN CG H
Sbjct: 4 VSNIVHTQGWVHCHTPATDASGPVKAIMDEVFEDFQSMRLPAPVRISLACCINMCGAVHC 63
Query: 467 GNIGILGLNKNGNEYFQILIGGSQGNKLN--------FGKIIGPSFSADQVPDIINRILK 518
+IG++G+++ +GG N+++ I + I I++
Sbjct: 64 SDIGVVGIHRGDGVVIM--VGGKVSNRISMPKFSKVVVAYIPNEPPRWPSLTKTIKHIIE 121
Query: 519 VYLRRCY 525
VY Y
Sbjct: 122 VYSANAY 128
Score = 39.3 bits (91), Expect = 6e-04
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 9/156 (5%)
Query: 120 GNCIRNITSDELSGVSFDEIIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAA 179
G + NI + D + + + LP +IS++ A
Sbjct: 1 GAGVSNIVHTQGWVHCHTPATDASGPVKAIMDEVFEDFQSMRLPAPVRISLACCINMCGA 60
Query: 180 IFVHDIGLRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKFLP-----WKHILTYIEAIL 234
+ DIG+ I G + P +++ ++P W + I+ I+
Sbjct: 61 VHCSDIGVVGIHRGDGVVIMVGGKVSNRISMPKFSKVVVAYIPNEPPRWPSLTKTIKHII 120
Query: 235 RIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEE 270
+Y+ R+ + IG E F E
Sbjct: 121 EVYSANAY----KYERLGEWAERIGWERFFSLTGLE 152
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite
reductase subunit beta, DsrB {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 179
Score = 75.0 bits (184), Expect = 3e-16
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 6/120 (5%)
Query: 409 LTDIICCPGGDFCSLANTKSLPIAKNIMKYFSKD--DQRNIGKISLNISGCINSCGHHHI 466
L++I+ G C + I K +M + D + ++++ C N CG H
Sbjct: 6 LSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLPAMCRISLACCANMCGAVHA 65
Query: 467 GNIGILGLNKNGNEYFQILIGGSQGNKLNF----GKIIGPSFSADQVPDIINRILKVYLR 522
+I I+G++ + ++ + + + +IL+ +
Sbjct: 66 SDIAIVGIHDGAAIMVGGKLSEARRMPELSKVVVPWVPNEPPRWPTLVKYVKQILEAWAA 125
Score = 47.7 bits (113), Expect = 1e-06
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 7/118 (5%)
Query: 156 HPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIGFCVIVGGGMG---RTPI 212
+ LP +IS++ A+ DI + I + + + +
Sbjct: 39 YFTDHKLPAMCRISLACCANMCGAVHASDIAIVGIHDGAAIMVGGKLSEARRMPELSKVV 98
Query: 213 IGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGIENFQFQVNEE 270
+ + + W ++ Y++ IL + R+ + IG E F E
Sbjct: 99 VPWVPNEPPRWPTLVKYVKQILEAWAANAN----KHERLIEWVDRIGWERFFELTGLE 152
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
reductase subunit alpha, DsrA {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 185
Score = 68.6 bits (167), Expect = 9e-14
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 5/115 (4%)
Query: 414 CCPGGDFCSLANTKSLPIAKNIMKYFSKDDQRN--IGKISLNISGCIN-SCGHHHIGNIG 470
C G C A +L + ++ + + R K + +GC N +
Sbjct: 8 ACMGPALCEFACYDTLELCYDLTMTYQDELHRPMWPYKFKIKCAGCPNDCVASKARSDFA 67
Query: 471 ILGLNKNGNEYFQILIGGSQGNKLN--FGKIIGPSFSADQVPDIINRILKVYLRR 523
I+G + +G + + D++ +I+ I +
Sbjct: 68 IIGTWRGATILIGGKAPFVEGAVIGWVAVPFVEVEKPYDEIKEILEAIWDWWDEE 122
Score = 44.7 bits (105), Expect = 1e-05
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 6/134 (4%)
Query: 139 IIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDRAAIFVHDIGLRAIKNKLGKIG 198
DT L P KFKI +G D A + I
Sbjct: 19 CYDTLELCYDLTMTYQDELHRPMWPYKFKIKCAGCPNDCVASKARSDFAIIGTWRGATIL 78
Query: 199 FCVIVG--GGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLK 256
G + + P+ I +EAI + + ++ RI L+
Sbjct: 79 IGGKAPFVEGAVIGWVAVPFVEVEKPYDEIKEILEAIW----DWWDEEGKFRERIGELIW 134
Query: 257 SIGIENFQFQVNEE 270
G+ F + E
Sbjct: 135 RKGMREFLKVIGRE 148
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit
beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Length = 134
Score = 65.4 bits (160), Expect = 3e-13
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 52 YMLRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILENLASV 111
Y +R+ ++S +R + IA KY + FTTR N++F + E+LAS
Sbjct: 62 YTVRVGAA-RLMSITHIREMCDIADKYCGGHLRFTTRNNVEFMVADEASLKALKEDLASR 120
Query: 112 EMH 114
+
Sbjct: 121 KFD 123
Score = 45.8 bits (109), Expect = 2e-06
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 348 PGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGL 401
++ + + ++AD Y LR T N+ + +L L ++
Sbjct: 69 ARLMSITHIREMCDIADKYCGGHLRFTTRNNVEFMVADEASLKALKEDLASRKF 122
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 55.9 bits (135), Expect = 2e-10
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 348 PGDITSEQMNFIANLADHYSFSELRVTHTQNIVLSDVTKDNLFNLWTEIKQYGL 401
+ +A + + R+T QN++++ V + + K+ GL
Sbjct: 23 LDYPARPLKTGLLEIAKIHKG-DFRITANQNLIIAGVPESEKAKIEKIAKESGL 75
Score = 41.2 bits (97), Expect = 2e-05
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 52 YMLRIAIPYGMLS----SKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILEN 107
+ L + I G + L IAK + ++ T QN+ + E I +
Sbjct: 11 WHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDF-RITANQNLIIAGVPESEKAKIEKI 69
Query: 108 LA 109
Sbjct: 70 AK 71
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite
reductase subunit alpha, DsrA {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 189
Score = 52.7 bits (126), Expect = 3e-08
Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 6/116 (5%)
Query: 414 CCPGGDFCSLANTKSLPIAKNIMKYFSKDDQR--NIGKISLNISGCIN-SCGHHHIGNIG 470
C G C A S + + + R K C N +
Sbjct: 9 SCLGKSRCEFACYDSQAACYELTMEYQDELHRPAFPYKFKFKFDACPNGCVASIARSDFS 68
Query: 471 ILGLNKNGNEYFQILIGGSQGNKL---NFGKIIGPSFSADQVPDIINRILKVYLRR 523
++G K G + D++ +++ +I ++
Sbjct: 69 VIGTWKRGASILCGAKAPILDGAQMGSLLVPFVAAEEPFDEIKEVVEKIWDWWMEE 124
Score = 40.3 bits (94), Expect = 3e-04
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 11/149 (7%)
Query: 120 GNCIRNITSDELSGVSFDE--IIDTRPYAEILRQWSTFHPEFAYLPRKFKISISGSQEDR 177
G+ +R S G S E D++ L P KFK
Sbjct: 1 GSNLRTPES--CLGKSRCEFACYDSQAACYELTMEYQDELHRPAFPYKFKFKFDACPNGC 58
Query: 178 -AAIFVHDIGLRAIKNKLGK--IGFCVIVGGGMGRTPIIGQIICKFLPWKHILTYIEAIL 234
A+I D + + G + G ++ + P+ I +E I
Sbjct: 59 VASIARSDFSVIGTWKRGASILCGAKAPILDGAQMGSLLVPFVAAEEPFDEIKEVVEKIW 118
Query: 235 RIYNQYGRRDNIYKSRIKILLKSIGIENF 263
+ + G+ + R+ +K + +
Sbjct: 119 DWWMEEGK----NRERLGETMKRLSFQKL 143
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
reductase) {Maize (Zea mays), root isoform [TaxId:
4577]}
Length = 154
Score = 29.8 bits (66), Expect = 0.84
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 201 VIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGI 260
+++ G G P G + F+ + +Y LK
Sbjct: 7 IMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQ-YP 65
Query: 261 ENFQFQV 267
+NF++
Sbjct: 66 DNFRYDK 72
>d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage
phi-X174 [TaxId: 10847]}
Length = 426
Score = 29.0 bits (65), Expect = 3.1
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 842 NGIIKFNPLYNWLEKDIWNYINTYNVPYNTLYDNGY 877
G ++ +PL L D I T+ VP+ +Y +
Sbjct: 46 VGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQW 81
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 27.8 bits (61), Expect = 3.5
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 163 PRKFKISISGSQEDRAAIFV-HDIG-LRAIKNKLGKIGFCVIVGGGMGRTPIIGQIICKF 220
PR E ++ + IG R+++ ++ I+GGG + + + K
Sbjct: 1 PRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKA 60
Query: 221 LPWKHILTYIEAILRIYNQY 240
+ + +
Sbjct: 61 RALGTEVIQLFPEKGNMGKI 80
>d1o63a_ c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-PRTase,
HisG), catalytic domain {Thermotoga maritima [TaxId:
2336]}
Length = 203
Score = 28.1 bits (62), Expect = 4.3
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 54 LRIAIPYGMLSSKQMRMLSYIAKKYDRNYGHFTTRQNIQFNWIKLKESPDILEN 107
L++AIP G L K M L ++R ++I ++ + P L +
Sbjct: 1 LKLAIPKGRLEEKVMTYLKKTGVIFERESSILREGKDIVCFMVRPFDVPTYLVH 54
>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 160
Score = 27.8 bits (61), Expect = 4.3
Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 11/98 (11%)
Query: 201 VIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYKSRIKILLKSIGI 260
+I+GGG+G P+ K + + + I ++ ++
Sbjct: 12 LIIGGGIGVPPLYELA-------KQLEKTGCQMTILLGFASENVKILENE----FSNLKN 60
Query: 261 ENFQFQVNEEWKNIKNGPSTLTLEELKRVKKYFITPKY 298
+ ++ K L E V +
Sbjct: 61 VTLKIATDDGSYGTKGHVGMLMNEIDFEVDALYTCGAP 98
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 27.6 bits (60), Expect = 5.5
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 201 VIVGGGMGRTPIIGQIICKFLPWKHILTYIEAILRIYNQYGRRDNIYK 248
+++G G G P + F + +YK
Sbjct: 12 IMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYK 59
>d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei
[TaxId: 4839]}
Length = 265
Score = 27.5 bits (60), Expect = 7.4
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 7/131 (5%)
Query: 312 CKHNKEFENWVHQNTKKHKINGYIIVILSLKRINMA-PGDITSEQMNFIANLADHYSFSE 370
C ++ + +T + N + S K I + G +S N+IA+L +F
Sbjct: 39 CDATEDLKIIKTWSTLIYDTNAMVARGDSEKTIYIVFRG--SSSIRNWIADL----TFVP 92
Query: 371 LRVTHTQNIVLSDVTKDNLFNLWTEIKQYGLSESNINLLTDIICCPGGDFCSLANTKSLP 430
+ + D+ + E+ L + + + +L
Sbjct: 93 VSYPPVSGTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATVLLCALD 152
Query: 431 IAKNIMKYFSK 441
+ + S
Sbjct: 153 LYQREEGLSSS 163
>d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 210
Score = 27.3 bits (60), Expect = 8.0
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 53 MLRIAIPY-GMLSSKQMRMLS---YIAKKYDRNYGHFTTRQNIQFNWIKLKESP 102
MLR+A+P G LS +L+ Y + ++ N++F +++ K+
Sbjct: 1 MLRVAVPNKGALSEPATEILAEAGYRRRTDSKDLTVIDPVNNVEFFFLRPKDIA 54
>d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), catalytic domain {Lactococcus lactis
[TaxId: 1358]}
Length = 204
Score = 26.9 bits (59), Expect = 9.5
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 53 MLRIAIPYGMLSSKQMRMLS----YIAKKYDRNY-GHFTTRQNIQFNWIKLKESPDILEN 107
M++IAI G + + ++L + + T+ ++Q + K + LE+
Sbjct: 1 MIKIAITKGRIQKQVTKLLENADYDVEPILNLGRELQIKTKDDLQIIFGKPNDVITFLEH 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,739,674
Number of extensions: 189951
Number of successful extensions: 681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 68
Length of query: 928
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 834
Effective length of database: 1,116,976
Effective search space: 931557984
Effective search space used: 931557984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)