BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3754
(755 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340788246|ref|YP_004753711.1| polyribonucleotide nucleotidyltransferase [Collimonas fungivorans
Ter331]
gi|340553513|gb|AEK62888.1| Polyribonucleotide nucleotidyltransferase [Collimonas fungivorans
Ter331]
Length = 714
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/699 (66%), Positives = 581/699 (83%), Gaps = 4/699 (0%)
Query: 59 MKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
MKG +FNK+ K+F+YG +++++E GEIARQA+ +VLVSIEDTV+LATVV+ KD +
Sbjct: 1 MKGYIVFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQD 60
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTVDY+EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGYLNE+Q+++
Sbjct: 61 FFPLTVDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQVII 120
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
+VLSVNP+IDPDIA++IG S ALS++ +PF GP+G A+VGYIDG+Y+LNPTT QL KS +
Sbjct: 121 HVLSVNPEIDPDIAAMIGASAALSVAGIPFAGPVGAARVGYIDGQYVLNPTTSQLTKSAM 180
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGTE A++ VESE+KQL E+I+L A++FGHE+ K INAI+ELV++ G+ +V W P
Sbjct: 181 DLVVAGTETAVLMVESEAKQLSEEIMLGAVVFGHEQSKAVINAIHELVRDGGKPEVEWSP 240
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDI 354
K++ LI+++ + E K+R+AYQ K+KQ R K+ + ++ ++L D
Sbjct: 241 APKNEALIARVAHFGEAKLREAYQTKDKQARTTKLKDATAEVNAALAAEAASIGGTAPDS 300
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
++++ IL+DLE+KI+R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQA
Sbjct: 301 SEVSGILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQA 360
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
LVVATLGT+RDEQKIDALMGE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRA
Sbjct: 361 LVVATLGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRA 420
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
L LP F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK
Sbjct: 421 LQAALPAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIK 480
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+G K +L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G
Sbjct: 481 EGSKFAVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGR 540
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+IL KM+ VP K ELS FAPRLIT+KI+P KIRDVIGKGG+ IR LTEETGTQIDI+
Sbjct: 541 IHILGKMQEAVPHGKTELSDFAPRLITVKINPEKIRDVIGKGGAVIRALTEETGTQIDIS 600
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
DEG++TIAS ++ +GQEAKRRIE+LT SV++GKVY G VL+L DFGAI+++L GKDGLLH
Sbjct: 601 DEGVVTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVLPGKDGLLH 660
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
ISQI+++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 ISQIANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 699
>gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase [Herminiimonas arsenicoxydans]
gi|187610275|sp|A4G647.1|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Herminiimonas arsenicoxydans]
Length = 710
Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/695 (65%), Positives = 574/695 (82%), Gaps = 5/695 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG + +++E GEIARQA+ +VLVSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHTVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGYLNE+QI+++V+SV
Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S ALS+S +PF GPLG A+VGYIDG+YILNPT QLK S +DL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+++L A++FGH++MK I+AI++LV++ G+ +V W P K++
Sbjct: 181 GTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVIDAIHDLVRDGGKPEVQWAPPAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDL----TFKNISKDIYSSLIDNENLTIDINDINC 359
LI+++ + +E K+R AYQ K+KQ R F ++ ++ + D +++
Sbjct: 241 ALIARVAHFAEEKLRAAYQTKDKQARTAKLKDAFAEVNAEVAAEATSVGGAAPDTSEVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QILD RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RDEQKIDALMGE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIKDG K
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+LSDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRIHILG 540
Query: 600 KMKTEVPK-CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
+M+ VP ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG+
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
+TIAS ++ +GQEAKRRIE+LT SV++GKVY G VL+L DFGAI++++ GKDGLLHISQI
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 695
>gi|399020444|ref|ZP_10722574.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
CF444]
gi|398094859|gb|EJL85213.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
CF444]
Length = 712
Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/694 (66%), Positives = 576/694 (82%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++++E GEIARQA+ +V+VSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSIEDTVVLATVVARKDAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++V+VLSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIVHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S ALSI+ +PF GP+G A+VGYIDG+YILNPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGSSAALSIAGIPFNGPVGAARVGYIDGQYILNPTATQLKTSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+++L A++FGHE+ K INAI+ELV++ G+ +V W P K++
Sbjct: 181 GTETAVLMVESEAQQLSEEVMLGAVVFGHEQSKAVINAIHELVRDGGKPEVQWAPPAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDI----YSSLIDNENLTIDINDINC 359
LI+++ +++ K+R+AYQ K+KQ R K ++ ++ + D ++
Sbjct: 241 PLIARVTELADGKLREAYQTKDKQARTEKLKTVTSEVNAALAADAAAAGTSAADSAEVGG 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QILD RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RDEQKIDALMGE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P +F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PPAEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRVHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ VP K ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG++
Sbjct: 541 KMQEAVPAGKAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +GQEAKRRIE+LT SV++GKVY G VL+L DFGAI+++L GKDGLLHISQI+
Sbjct: 601 TIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 694
>gi|395763186|ref|ZP_10443855.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium
lividum PAMC 25724]
Length = 705
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/694 (65%), Positives = 575/694 (82%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++++E GEIARQA+ +VLVSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++++VLSV
Sbjct: 61 VDYVEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL +S +PF GP+G A+VGY +G+YILNPT +QLK S +DL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALCVSGVPFNGPIGAARVGYANGQYILNPTVQQLKTSEMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+KQL E+I+L A++FGH++MK+ I+AI++LV++ G+ +V W P K++
Sbjct: 181 GTETAVLMVESEAKQLSEEIMLGAVVFGHDQMKVVIDAIHDLVRDGGKPEVEWAPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL----IDNENLTIDINDINC 359
LI+++ + + KI AYQ K+KQ R K + ++ + L +ID ++N
Sbjct: 241 ALIARVAHFANAKINDAYQTKDKQERTAKLKAATSEVIADLSAEAAAAGGASIDSAEVNN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+D+E+KI+R QILD RID R +RPISIRT +LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDIEAKIVRTQILDGEPRIDGRDTRTVRPISIRTSVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RD QKIDALMGEFTDSFMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDSQKIDALMGEFTDSFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P +F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ EHVAGIAMGLIK+G K
Sbjct: 421 PAAEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKEHVAGIAMGLIKEGGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+LSDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGTRNGITALQMDIKIMGITKEIMQVALAQAKEGREHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
+M+ +P K ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG++
Sbjct: 541 EMQKAMPHVKTELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +GQEAKRRIE+LT SV++GK Y G VL+L DFGAI++++ GKDGLLHISQI+
Sbjct: 601 TIASVDAAAGQEAKRRIEELTASVEVGKTYEGTVLKLLDFGAIVQVMPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D+LKE Q VRVKVL DDRGR+KLSM
Sbjct: 661 NERVNAVADYLKEGQLVRVKVLETDDRGRLKLSM 694
>gi|409405576|ref|ZP_11254038.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
GW103]
gi|386434125|gb|EIJ46950.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
GW103]
Length = 711
Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/694 (65%), Positives = 574/694 (82%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++++E GEIARQA+ +V+VS+EDTVILATVV+ K+ +FFPLT
Sbjct: 1 MFNKVSKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++++VLSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI ++IG S ALS++ +PF GP+G A+VGYIDG+Y+LNPTT QLK S LDL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L A++FGH++ K I AI+ LV++ G+ +V W K++
Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWSAPAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID----NENLTIDINDINC 359
LI+++ ++E +R+AYQ K+KQ R K +S + +L+ N + D ++
Sbjct: 241 ALIARVAQLAEGPLREAYQTKDKQARTEKLKAVSAQVNEALVAEAAANNGVAADAAEVGS 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RDEQKID L+GE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P ++F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ VP + ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG++
Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +GQEAKRRIE+LT SV++GK+Y G VL+L DFGAI+++L GKDGLLHISQI+
Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 694
>gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase [Janthinobacterium sp. Marseille]
gi|187610276|sp|A6SY02.1|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp.
Marseille]
Length = 711
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/695 (65%), Positives = 575/695 (82%), Gaps = 5/695 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++++E GEIARQA+ +VLVSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVAKKDAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGYLNE+QI+++V+SV
Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S ALS++ +PF GP+G A+VGYIDG+Y+LNPTT QL KS LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALSVAGIPFAGPVGAARVGYIDGQYVLNPTTSQLAKSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+KQL E+++L A++FGHE+MK I+AI++LV++ G+ +V W P K++
Sbjct: 181 GTEIAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHDLVRDGGKPEVQWSPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 359
LIS++ + +E K+R AYQ K+KQ R K+ ++ + L D ++
Sbjct: 241 ALISRVAHFAEAKLRAAYQTKDKQARTTKLKDAFAEVNNELAAEAASIGAAAPDTAEVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RDEQKIDALMGE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAAL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGSKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRVHILG 540
Query: 600 KMKTEVPK-CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
+M+ VP ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG+
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
+TIAS ++ +GQEAKRRIE+LT SV++GK+Y G VL+L DFGAI++++ GKDGLLHISQI
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+++RVN + D+L+E Q+VRVKVL DDRGR+KLSM
Sbjct: 661 ANERVNAVADYLQEGQQVRVKVLETDDRGRLKLSM 695
>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
seropedicae SmR1]
gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
seropedicae SmR1]
Length = 712
Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/694 (64%), Positives = 574/694 (82%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++++E GEIARQA+ +V+VS+EDTVILATVV+ K+ +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++++VLSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI ++IG S ALS++ +PF GP+G A+VGYIDG+Y+LNPTT QLK S LDL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L A++FGH++ K I AI+ LV++ G+ +V W K++
Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID----NENLTIDINDINC 359
LI+++ ++E +R+AYQ K+KQ R K ++ + +L+ N + D ++
Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RDEQKID L+GE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P ++F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ VP + ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG++
Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +GQEAKRRIE+LT SV++GK+Y G VL+L DFGAI+++L GKDGLLHISQI+
Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 694
>gi|445498215|ref|ZP_21465070.1| polyribonucleotide nucleotidyltransferase Pnp [Janthinobacterium
sp. HH01]
gi|444788210|gb|ELX09758.1| polyribonucleotide nucleotidyltransferase Pnp [Janthinobacterium
sp. HH01]
Length = 707
Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/694 (65%), Positives = 573/694 (82%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG + +++E GEIARQA+ +V+VSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHTVTLETGEIARQASGAVMVSIEDTVVLATVVARKDAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++++VLSV
Sbjct: 61 VDYVEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL +S +PF GP+G A+VGY +G+YILNPT EQLK S +DL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALCVSGVPFNGPVGAARVGYANGQYILNPTVEQLKTSQMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGH +MK I+AI++LV++ G+ +V W P K++
Sbjct: 181 GTETAVLMVESEAQQLSEEIMLGAVVFGHTEMKAVIDAIHDLVRDGGKPEVEWVPPAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL----IDNENLTIDINDINC 359
LI ++ + + KI +AYQ K+KQ R K + ++ + L +D ++N
Sbjct: 241 ALIGRVAHFASSKINEAYQTKDKQERTAKLKAATSEVLADLSAEAAAAGAAPVDAAEVNN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+D+E+KI+R QILD RID R +RPISIRT +LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDMEAKIVRTQILDGEPRIDGRDTRTVRPISIRTSVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RD QKIDALMGEFTDSFMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDSQKIDALMGEFTDSFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ EHVAGIAMGLIK+G K
Sbjct: 421 PSPEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKEHVAGIAMGLIKEGGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+LSDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGTRNGITALQMDIKIMGITKEIMQVALAQAKEGREHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
+M+ +P K ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG++
Sbjct: 541 EMQKAMPHVKTELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +GQEAKRRIE+LT SV++GK Y G+VL+L DFGAI++++ GKDGLLHISQI+
Sbjct: 601 TIASVDAAAGQEAKRRIEELTASVEVGKTYDGVVLKLLDFGAIVQVMPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D+LKE Q VRVKVL DDRGR+KLSM
Sbjct: 661 NERVNAVADYLKEGQAVRVKVLETDDRGRLKLSM 694
>gi|415924064|ref|ZP_11554830.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
frisingense GSF30]
gi|407760420|gb|EKF69718.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
frisingense GSF30]
Length = 711
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/694 (64%), Positives = 573/694 (82%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++++E GEIARQA+ +V+VS+EDTVILATVV+ K+ +FFPLT
Sbjct: 1 MFNKVSKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++++VLSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI ++IG S ALS++ +PF GP+G A+V YIDG+Y+LNPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVAYIDGQYVLNPTQTQLKSSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L A++FGH++ K I AI+ LV++ G+ +V W K++
Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID----NENLTIDINDINC 359
LI+++ ++E +R+AYQ K+KQ R K +S + +L+ N + D ++
Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVSAQVNEALVAEAAANNGVAADAAEVGS 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RDEQKID L+GE+TD FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDGLLGEYTDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P ++F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKSHVAGIAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+Q+AL +AK+G +IL+
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALEQAKEGRHHILD 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ VP + ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG++
Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +GQEAKRRIE+LT SV++GK+Y G VL+L DFGAI+++L GKDGLLHISQI+
Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 694
>gi|427401540|ref|ZP_18892612.1| polyribonucleotide nucleotidyltransferase [Massilia timonae CCUG
45783]
gi|425719649|gb|EKU82581.1| polyribonucleotide nucleotidyltransferase [Massilia timonae CCUG
45783]
Length = 700
Score = 972 bits (2513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/690 (64%), Positives = 566/690 (82%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG + +++E GEIARQA+ +V+VS+EDTVILATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHTVTLETGEIARQASGAVVVSVEDTVILATVVAKKDAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++++VLSV
Sbjct: 61 VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI S+IG S AL I+ +PF GP+G A+VGY +G+YILNPTT +LK S +DL+VA
Sbjct: 121 NPEIDPDIPSMIGASAALCIAGIPFAGPIGAARVGYANGQYILNPTTTELKTSQMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+++L A++FGHE+MK I+AI++LV G+ +V W P K++
Sbjct: 181 GTETAVLMVESEAQQLSEEVMLGAVVFGHEQMKAVIDAIHDLVAEGGKPEVEWAPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+++ ++ KIR AYQ + K R K++S ++ + L + + D D+ IL+D
Sbjct: 241 ELIARVGELAGAKIRDAYQTREKSARQQKLKSLSSEVMAEL-SAQGIAADAGDVGNILFD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+K++R QILD RID R +RPISIR+ +LPRTHGS+LFTRG+TQALVVATLGT+
Sbjct: 300 MEAKVVRSQILDGEPRIDGRDTRTVRPISIRSSVLPRTHGSALFTRGETQALVVATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD QKIDALMGE+TD FM+HYNMPPFATG+ GR+G PKRRE+GHGRLAKRAL+ LPN
Sbjct: 360 RDSQKIDALMGEYTDDFMMHYNMPPFATGETGRVGTPKRREVGHGRLAKRALVAALPNPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K +L+
Sbjct: 420 DFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGGKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK G +IL +M+
Sbjct: 480 DILGDEDHLGDMDFKVAGTAQGITALQMDIKIQGITKEIMQVALAQAKDGRQHILAEMQK 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+P K ELS FAPRLITI+I+P KIRDVIGKGG+ IR LTEETGTQIDI DEGI+TIAS
Sbjct: 540 AMPTVKTELSDFAPRLITIRINPEKIRDVIGKGGAVIRALTEETGTQIDITDEGIVTIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ +GQEAKRRIE+LT SV++GK Y G VL+L DFGAI++++ GKDGLLHISQI+++RV
Sbjct: 600 VDAAAGQEAKRRIEELTASVEVGKTYDGTVLKLLDFGAIVQVMPGKDGLLHISQIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + D+LKE Q+VRVKVL D+RGR+KLSM
Sbjct: 660 NAVADYLKEGQQVRVKVLETDERGRLKLSM 689
>gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
OXCC13]
gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
OXCC13]
Length = 713
Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/694 (64%), Positives = 572/694 (82%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++E GEIARQA+ +V+VS++DTV+LATVV+ D +FFPLT
Sbjct: 1 MFNKVSKTFQYGQQTVTMETGEIARQASGAVMVSVDDTVVLATVVAKDDVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK+YAAGRIPGSFFKREG+PSE+ET+ SRLIDRPIRPLFPEGY NE+Q++++VLSV
Sbjct: 61 VDYIEKSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGYFNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++DPDI S+I S AL +S +PF GPLG A+VGYIDG+Y+LNPT QL S +DL+VA
Sbjct: 121 NPEVDPDIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSKMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+++LPEDI+L A++FGHE+MK+ I+AI+ELV++ G+ +V W P K++
Sbjct: 181 GTEQAVLMVESEAEELPEDIMLGAVVFGHEQMKVVIDAIDELVRDGGKPEVEWAPPAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFK----NISKDIYSSLIDNENLTIDINDINC 359
LI+ + I+E ++RKAYQI+ KQ R + N+SK + + D D ++
Sbjct: 241 ELIAAVTRIAEPELRKAYQIRQKQARSTELRHIYDNVSKTLAAEAQDKGVSAPDSVEVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I++DLE+KI+R QILD RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 IMFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGTSRD QKIDALMGE++D+FM+HYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTSRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIACL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F+YSIRLVSEI ESNGSSSMASVCGG LAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PSQEEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKNHVAGIAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NG+ ALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGVNALQMDIKIQGITKEIMQVALAQAREGRMHILS 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ +P+ K ELS FAPRLITI+I+P KIRDVIGKGG+ IR LTEETG QIDI D+G++
Sbjct: 541 KMQEAMPQFKTELSDFAPRLITIRINPEKIRDVIGKGGAVIRGLTEETGAQIDITDDGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +GQEAKRRIE+LT SV++GK+Y G VL+L DFGAI++IL GKDGLLHISQI+
Sbjct: 601 TIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQILPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
S+RVN +TD+L+E Q VRVKVL DDRGRIKLSM
Sbjct: 661 SERVNAVTDYLEEGQAVRVKVLETDDRGRIKLSM 694
>gi|329901002|ref|ZP_08272663.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
bacterium IMCC9480]
gi|327549290|gb|EGF33865.1| Polyribonucleotide nucleotidyltransferase [Oxalobacteraceae
bacterium IMCC9480]
Length = 717
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/695 (66%), Positives = 578/695 (83%), Gaps = 6/695 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++++E GEIARQA+ +VLVSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVSKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRP+RPLFPEGY+NE+QI+++VLSV
Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPVRPLFPEGYMNEVQIIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S ALS+S +PF GP+G A+VGYI+G+Y+LNPTT QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALSVSGVPFSGPVGAARVGYINGQYVLNPTTTQLKSSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+KQL E+++L A++FGHE+MK I+AI+ELV++ G+ ++ W P K++
Sbjct: 181 GTEAAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHELVRDGGKPEIEWAPAAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI-----DINDIN 358
LIS++ + E K+R AYQ K+KQ R K + ++ +L E +I D D+N
Sbjct: 241 ALISRVAHFGEAKLRDAYQTKDKQARTAKLKTATSEVMEAL-KAEAASIAGVAPDSADVN 299
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
IL+DLE+KI+R QIL+ RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALV+A
Sbjct: 300 NILFDLEAKIVRSQILEGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQALVIA 359
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT+RDEQKIDALMGE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRALL
Sbjct: 360 TLGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAA 419
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP +F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIKDG K
Sbjct: 420 LPPVEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGK 479
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+L+DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTAKGITALQMDIKIQGITKEIMQVALAQAKEGRLHIL 539
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
+KM+ VP ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG+
Sbjct: 540 DKMQQAVPIGHTELSNFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 599
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
+TIAS ++ +G EAKRRIE+LT SV++GK+Y G VL+L DFGAI++++ GKDGLLHISQI
Sbjct: 600 VTIASVDASAGLEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 659
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 660 ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 694
>gi|398836871|ref|ZP_10594197.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
YR522]
gi|398210658|gb|EJM97300.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
YR522]
Length = 705
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/690 (66%), Positives = 576/690 (83%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++++E GEIARQA+ +V+VSIEDTVILATVV+ K+ +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSIEDTVILATVVARKEAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++V+VLSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIVHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S ALS++ +PF GP+G A+VGYIDG+Y+LNPT+ QLK S L+L+VA
Sbjct: 121 NPEIDPDIAAMIGSSAALSLAGIPFSGPVGAARVGYIDGQYVLNPTSTQLKSSQLNLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L A++FGHE+ K I+AI+ELV++ G+ +V W P K+
Sbjct: 181 GTESAVLMVESEADQLSEEVMLGAVVFGHEQSKAVIDAIHELVRDGGKPEVQWAPPAKND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+++ ++E +R AYQ K+KQ R K ++ + +L+ + +D++D++ IL+D
Sbjct: 241 ALIARVSQLAEGPLRAAYQTKDKQARTEKLKAVTSQVNEALV-ADAADVDLSDVSTILFD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQALVVATLGT+
Sbjct: 300 LEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQKID L+GE+TD FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRALL LP +
Sbjct: 360 RDEQKIDGLLGEYTDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAALPAAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K +L+
Sbjct: 420 EFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKSHVAGIAMGLIKEGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+G +IL KM
Sbjct: 480 DILGDEDHLGDMDFKVAGTAEGITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMAE 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
VP ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG++TIAS
Sbjct: 540 AVPAGTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVVTIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ +GQEAKRRIE+LT SV++GK+Y G VL+L DFGAI+++L GKDGLLHISQI+++RV
Sbjct: 600 VDATAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 660 NAVADYLKEGQQVRVKVLETDDRGRLKLSM 689
>gi|237745432|ref|ZP_04575912.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
HOxBLS]
gi|229376783|gb|EEO26874.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes
HOxBLS]
Length = 707
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/694 (64%), Positives = 569/694 (81%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG + +++E GEIARQA+ +V+VS++DTV+LATVV+ D +FFPLT
Sbjct: 1 MFNKVSKTFQYGQHTVTLETGEIARQASGAVVVSMDDTVVLATVVAKDDVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK+YAAGRIPGSFFKREG+PSE+ET+ SRLIDRPIRPLFP+GY NE+Q++++VLSV
Sbjct: 61 VDYIEKSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGYFNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI S+I S AL +S +PF GPLG A+VGYIDG+Y+LNPT QL S LDL+VA
Sbjct: 121 NPEIDPDIPSMIAASAALCVSGIPFNGPLGAARVGYIDGQYVLNPTASQLPLSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+K+LPED++L A++FGHE+MK+ I+AI+ELV G+ +V W P +++
Sbjct: 181 GTEQAVLMVESEAKELPEDVMLGAVVFGHEQMKVVIDAIDELVSEGGKPEVEWAPPARNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENL----TIDINDINC 359
LI+ + I+E ++RKAYQI+ KQ R ++I + + +L D ++
Sbjct: 241 ELIAAVTRIAEPELRKAYQIRQKQARSSELRHIYEKVNQTLASEAEAKGAAAPDSVEVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+ I+R QILD RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEAGIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGTSRD QKIDALMGE++D+FM+HYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTSRDNQKIDALMGEYSDAFMMHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVACL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F+YSIRLVSEI ESNGSSSMASVCGG LAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PSQDEFSYSIRLVSEIMESNGSSSMASVCGGSLALMDAGVPVKTHVAGIAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTSTGVTALQMDIKIQGITKEIMQVALAQAREGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ +P+ K ELS FAPRLIT++I+P KIRDVIGKGG+ IR LTEETG QIDIND+GI+
Sbjct: 541 KMQEAMPQFKTELSDFAPRLITMRINPEKIRDVIGKGGAVIRALTEETGAQIDINDDGIV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +GQEAKRRIE+LT SV+ GK Y G VL+L DFGAI++IL GKDGLLHISQI+
Sbjct: 601 TIASVDAAAGQEAKRRIEELTASVETGKTYDGTVLKLLDFGAIVQILPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
S+RVN ++D+L+E Q VRVKVL D+RGRIKLSM
Sbjct: 661 SERVNAVSDYLEEGQSVRVKVLETDERGRIKLSM 694
>gi|124483602|emb|CAM32674.1| Polyribonucleotide nucleotidyltransferase [Herbaspirillum
seropedicae]
Length = 712
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/694 (63%), Positives = 564/694 (81%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +++++E GEIARQA+ +V+VS+EDTVILATVV+ K+ +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++++VLSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI ++IG S ALS++ +PF GP+G A+VGYIDG+Y+LNPTT QLK S LDL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L A++FGH++ K I AI+ LV++ G+ +V W K++
Sbjct: 181 GTETAVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID----NENLTIDINDINC 359
LI+++ ++E +R+AYQ K+KQ R K ++ + +L+ N + D ++
Sbjct: 241 ALIARVSQLAEGPLREAYQTKDKQARTEKLKAVTAQVNEALVAEAAANNGVAADAAEVGS 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RD Q IDA+ GE+ ++F+ HYN PPF+ G+ GR+ PKRREIGHGRLAKR +L V+
Sbjct: 361 LGTARDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVM 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ F Y+IRLVSEITESNGSSSMASVCG LAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PSLEAFPYTIRLVSEITESNGSSSMASVCGSSLALMDAGVPMKAHVAGIAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ VP + ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG++
Sbjct: 541 KMQEAVPAGRAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +GQEAKRRIE+LT SV++GK+Y G VL+L DFGAI+++L GKDGLLHISQI+
Sbjct: 601 TIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 694
>gi|421482590|ref|ZP_15930170.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
piechaudii HLE]
gi|400198901|gb|EJO31857.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
piechaudii HLE]
Length = 720
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/695 (61%), Positives = 548/695 (78%), Gaps = 6/695 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +V+VSIEDTV+LATVV+ K FFPLT
Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPE + NE+Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL+IS +PF GP+G A+VGYIDG+Y LNPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYALNPTASQLKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L +++GHE+M+ INAI+ELV++ G+ +W KD+
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQAPAKDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-----DNENLTIDINDIN 358
LI+ + + ++ + AYQI+ KQ R + +S D+ + L E+L D ++
Sbjct: 241 ALIAAVTSAAQEGLNAAYQIREKQARTAKLREVSADVSAKLAAAAAEKGESLP-DAVTVD 299
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
I++ LES I+R QIL+ RID R +RPIS+R G+LPR HGS+LFTRG+TQALVVA
Sbjct: 300 NIMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVA 359
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT +DEQ IDALMGE+ D FM+HYNMPPFATG+ GRIGVPKRREIGHGRLAKR+L+P+
Sbjct: 360 TLGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIPL 419
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLI DG K
Sbjct: 420 LPAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGK 479
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+L+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHIL 539
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
KMK + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G
Sbjct: 540 TKMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGT 599
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
I IAS + +EA+RRI +LT V++G++Y G VLRL DFGAI+++L G+DGLLHIS+I
Sbjct: 600 IVIASVDEAQAKEAQRRIVELTADVEVGQIYEGSVLRLLDFGAIVQVLPGRDGLLHISEI 659
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++ R+ I D LK Q+VRVKV+ DD+GR++LS+
Sbjct: 660 ANYRIANINDVLKVGQQVRVKVIEADDKGRLRLSI 694
>gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis E264]
gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis TXDOH]
gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis E264]
gi|123726649|sp|Q2SZN9.1|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia
thailandensis E264]
Length = 713
Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/693 (61%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNKI+K F++G +K+ +E GEIARQA+ +VLV +EDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis Bt4]
Length = 713
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/693 (61%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNKI+K F++G +K+ +E GEIARQA+ +VLV +EDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
L +++ +++ ++ AYQI++KQ R K + S + + ++ D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALAAGTVSADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
AUO158]
gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
AUO158]
Length = 722
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/706 (60%), Positives = 550/706 (77%), Gaps = 8/706 (1%)
Query: 51 HSRRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSC 110
H +G M +FNK++K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV
Sbjct: 2 HEFKGATMS----MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGA 57
Query: 111 KDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGY 170
K +FFPLTVDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+
Sbjct: 58 KSAKPGQDFFPLTVDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGF 117
Query: 171 LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTT 230
NE+Q+V++VLSVNP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT
Sbjct: 118 YNEVQVVIHVLSVNPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTR 177
Query: 231 EQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG 290
EQLK S LDL+VAGTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV++ G
Sbjct: 178 EQLKASRLDLVVAGTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRDGG 237
Query: 291 QKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLID 346
+ + +W P KD+ LI+++ +++ ++ AYQI++KQ R K + S + +
Sbjct: 238 KPEWDWQPAPKDEALIARVTELAQPELLAAYQIRDKQARSTKLKEVYTATSAKLEEEALA 297
Query: 347 NENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSL 406
+ D + IL+DLE+KI+R QIL RID R +RPI IRTG+LPRTHGS+L
Sbjct: 298 AGTVAADKATVGNILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSAL 357
Query: 407 FTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIG 466
FTRG+TQALVVATLGT DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIG
Sbjct: 358 FTRGETQALVVATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIG 417
Query: 467 HGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVA 526
HGRLAKRAL+ LP+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVA
Sbjct: 418 HGRLAKRALVACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVA 477
Query: 527 GIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIA 586
GIAMGLI +G K +L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+A
Sbjct: 478 GIAMGLILEGNKFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVA 537
Query: 587 LYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEE 646
L +AK+G +IL KM V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEE
Sbjct: 538 LAQAKEGRMHILRKMTEAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEE 597
Query: 647 TGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRIL 706
TGT IDI+D+G++TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L
Sbjct: 598 TGTTIDISDDGVVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLL 657
Query: 707 SGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
GKDGLLHIS+I ++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 658 PGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 703
>gi|422322942|ref|ZP_16403982.1| polyribonucleotide nucleotidyltransferase [Achromobacter
xylosoxidans C54]
gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter
xylosoxidans C54]
Length = 718
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/694 (61%), Positives = 544/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +V+VSIEDTV+LATVV+ K FFPLT
Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPE + NE+Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI ++IG S AL+IS +PF GP+G A+VGYIDG+Y +NPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+I+L +++GHE+M+ INAI+ELV++ G+ +W P KD+
Sbjct: 181 GTENAVLMVESEADQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQPPAKDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL----IDNENLTIDINDINC 359
LI+ + + ++ + AYQI+ KQ R + + D+ + L + D ++
Sbjct: 241 ALIAAVTSAAQEGLNAAYQIREKQARTTKLREVYADVSAKLNAAAAEKGEPAPDAVTVDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+ LES I+R QIL+ RID R +RPIS+R G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKRAL+P+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALIPLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLI DG K
Sbjct: 421 PAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IAS + +EA+RRI +LT V++G+VY G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q+VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSI 694
>gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
oklahomensis EO147]
gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
oklahomensis C6786]
Length = 714
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/693 (60%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNK++K F++G +K+ +E GEIARQA+ +VLV IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKVVKEFQWGQHKVRLETGEIARQASGAVLVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + NW P K++
Sbjct: 183 GTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWNWQPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN----DINC 359
LI+++ +++ ++ AYQI+ KQ R K + + L + + +
Sbjct: 243 ALIARVTELAQADLQAAYQIREKQSRSTKLKEVYAAATAKLAEEAAASNAEAADAATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei K96243]
gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase [Burkholderia pseudomallei 1710b]
gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase [Burkholderia pseudomallei 668]
gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase [Burkholderia pseudomallei 1106a]
gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 305]
gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei DM98]
gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 14]
gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 91]
gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 9]
gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei B7210]
gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 7894]
gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei NCTC 13177]
gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 112]
gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BCC215]
gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 576]
gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pakistan 9]
gi|237811578|ref|YP_002896029.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei MSHR346]
gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106b]
gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710a]
gi|386862398|ref|YP_006275347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026b]
gi|403518000|ref|YP_006652133.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BPC006]
gi|418389928|ref|ZP_12967744.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354a]
gi|418538035|ref|ZP_13103663.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026a]
gi|418541532|ref|ZP_13107010.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258a]
gi|418547776|ref|ZP_13112914.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258b]
gi|418553957|ref|ZP_13118757.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354e]
gi|81380050|sp|Q63VN7.1|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123599745|sp|Q3JUB3.1|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470947|sp|A3NTA2.1|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470948|sp|A3N7L3.1|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei K96243]
gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710b]
gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 668]
gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106a]
gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 305]
gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 576]
gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pakistan 9]
gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei MSHR346]
gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106b]
gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710a]
gi|385348795|gb|EIF55391.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026a]
gi|385357695|gb|EIF63735.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258a]
gi|385359817|gb|EIF65767.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258b]
gi|385370904|gb|EIF76126.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354e]
gi|385375882|gb|EIF80619.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354a]
gi|385659526|gb|AFI66949.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026b]
gi|403073643|gb|AFR15223.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BPC006]
Length = 713
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/693 (61%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNKI+K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1655]
gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1655]
Length = 713
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/693 (61%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNKI+K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 VLNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 406e]
gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 406e]
Length = 713
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/693 (61%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNKI+K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKTSRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|424902717|ref|ZP_18326233.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
gi|390933092|gb|EIP90492.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
Length = 713
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/693 (60%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNK++K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKVVKEFQWGQHKVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT Q+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
L +++ +++ ++ AYQI++KQ R K + + L ++ + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILGGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei S13]
gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei S13]
Length = 713
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/693 (60%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNKI+K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKV GT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVVGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD1]
gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD1]
Length = 713
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 548/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 1 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 61 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQLK S LDL+VA
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPE+++L A++FGHE+M+ AI+AI+ELV++ G+ + +W P KD+
Sbjct: 181 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ I++ ++ AYQI++KQ R K + + L ++ + D +
Sbjct: 241 ALIARVTEIAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 421 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 541 KMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 601 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 661 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693
>gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase [Burkholderia mallei ATCC 23344]
gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Burkholderia
mallei GB8 horse 4]
gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
SAVP1]
gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase [Burkholderia mallei NCTC 10229]
gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase [Burkholderia mallei NCTC 10247]
gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
PRL-20]
gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
10399]
gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
2002721280]
gi|81604650|sp|Q62IN1.1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470944|sp|A3MI97.1|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470945|sp|A2S463.1|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470946|sp|A1V2L2.1|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
23344]
gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
SAVP1]
gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
10229]
gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
10247]
gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
2002721280]
gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
10399]
gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Burkholderia
mallei GB8 horse 4]
gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
PRL-20]
Length = 713
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/693 (61%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNKI+K F++G K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQQKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARLTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
multivorans ATCC 17616]
gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
multivorans ATCC 17616]
gi|421469587|ref|ZP_15918034.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC BAA-247]
gi|421478340|ref|ZP_15926103.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CF2]
gi|226702628|sp|A9AJP0.1|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC 17616]
gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC 17616]
gi|400224933|gb|EJO55128.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CF2]
gi|400229438|gb|EJO59286.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC BAA-247]
Length = 715
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 548/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPE+++L A++FGHE+M+ AI+AI+ELV++ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ I++ ++ AYQI++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTEIAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|416939635|ref|ZP_11934390.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
Length = 713
Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/693 (60%), Positives = 549/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 1 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 61 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQLK S LDL+VA
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKTSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 181 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LI+++ +++ ++ AYQI++KQ R K + S + + + + D +
Sbjct: 241 ALIARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEAALAAGTVAADKATVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 421 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 541 KMTSAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 601 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 661 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693
>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
adenylyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
Polynucleotide adenylyltransferase (EC 2.7.7.19)
[Burkholderia rhizoxinica HKI 454]
Length = 768
Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/707 (58%), Positives = 556/707 (78%), Gaps = 8/707 (1%)
Query: 51 HSRRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSC 110
H+RR ++G +FNKI+K FK+G + + +E GEIARQA+ +V+V +EDTV+LATVV+
Sbjct: 38 HARR----LEGVKMFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVAA 93
Query: 111 KDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGY 170
K +FFPLTVDYIEK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+
Sbjct: 94 KSAKPGQDFFPLTVDYIEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGF 153
Query: 171 LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTT 230
NE+Q+V++VLS+NP I DI ++IG S AL+IS +PF GP+G A+V YID +++LNPT
Sbjct: 154 YNEVQVVIHVLSINPDIPADIPAMIGASAALAISGIPFNGPIGAARVAYIDNQFVLNPTR 213
Query: 231 EQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG 290
Q K S LDL+VAGTE+A++ VESE+ QLPE+++L A++FGHE+M++AI+AI++LV+ G
Sbjct: 214 SQSKASKLDLVVAGTERAVLMVESEADQLPEEVMLGAVVFGHEQMQVAIDAIHDLVKEGG 273
Query: 291 QKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE-- 348
+ + +W P KD+ LI+++ ++ +++ AYQI+ KQ R K + + + L +
Sbjct: 274 KPEWDWQPAPKDEALIARVTELALAELQAAYQIRQKQQRSAKLKEVYAAVTAKLAEQSVA 333
Query: 349 --NLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSL 406
+D + IL+DLE++I+R QIL+ RID R +RPI IRTG+LPR HGS+L
Sbjct: 334 AGTAVVDAATVGNILFDLEARIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRAHGSAL 393
Query: 407 FTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIG 466
FTRG+TQALVVATLGT DEQ IDA+ GE+ + FMLHYNMPPFATG+ GR+G PKRREIG
Sbjct: 394 FTRGETQALVVATLGTKGDEQIIDAIEGEYRERFMLHYNMPPFATGETGRVGSPKRREIG 453
Query: 467 HGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVA 526
HGRLAKR+L+P LP +++F Y+IR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVA
Sbjct: 454 HGRLAKRSLVPCLPGDDEFGYTIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVA 513
Query: 527 GIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIA 586
GIAMGLI +G K +L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+A
Sbjct: 514 GIAMGLILEGNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVA 573
Query: 587 LYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEE 646
L +A++G +IL+KM + VP +LS+FAPR+IT+KI+P KIRDVIGKGGS IR LTEE
Sbjct: 574 LAQAREGRLHILDKMTSAVPSTNMQLSQFAPRMITMKINPEKIRDVIGKGGSVIRALTEE 633
Query: 647 TGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRIL 706
T T IDI+D+G++TIAS + EAK+RIE +T V++G++Y G +L+L DFGAI+ IL
Sbjct: 634 TNTTIDISDDGVVTIASTSPEGMAEAKKRIENITAEVEVGQIYEGAILKLLDFGAIVNIL 693
Query: 707 SGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
G+DGLLHIS+I+++R+ I D+LKE Q+V+VKV+ D++GR++LS+
Sbjct: 694 PGRDGLLHISEIANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSV 740
>gi|377821149|ref|YP_004977520.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. YI23]
gi|357935984|gb|AET89543.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. YI23]
Length = 717
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/698 (60%), Positives = 549/698 (78%), Gaps = 4/698 (0%)
Query: 59 MKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
MKG +FNKI+K FK+G + + +E GEIARQA+ +V+V IEDTV+LATVV K +
Sbjct: 1 MKGVTMFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDIEDTVVLATVVGAKTAKPGQD 60
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTVDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V+
Sbjct: 61 FFPLTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVI 120
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
+VLS+NP+I DI ++IG S AL+IS LPF GP+G A+V Y++ +Y+LNPT Q+K+S L
Sbjct: 121 HVLSLNPEIPADIPALIGASAALAISGLPFNGPVGAARVAYLNNEYVLNPTRAQMKESAL 180
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGTE+A++ VESE++QL E+++L A++FGH++M+ AI+AI+ELV+ G+ + +W P
Sbjct: 181 DLVVAGTERAVLMVESEAQQLSEEVMLGAVVFGHDQMQTAIDAIHELVREGGKPEWDWAP 240
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDI 354
K++ LI+++ I++ ++ AYQ++NK R K + S + + + + D
Sbjct: 241 APKNEALIARVTEIAKPELEAAYQLRNKSARSAKLKEVYAAASAKLEADAAASGTVAADK 300
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
+ +L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQA
Sbjct: 301 ATVGNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQA 360
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
LVVATLGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRA
Sbjct: 361 LVVATLGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRA 420
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
L+ LP+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI
Sbjct: 421 LVACLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIL 480
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+G K +L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G
Sbjct: 481 EGNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGR 540
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+IL KM VP ELS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+
Sbjct: 541 MHILGKMTAAVPHTNTELSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDIS 600
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
D+G++TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLH
Sbjct: 601 DDGVVTIASTSSEGMAEAKKRIENITAEVEVGQVYEGPVLKLLDFGAIVNILPGKDGLLH 660
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
IS+I ++RV I D+LKE Q V+VKV+ D++GR++LS
Sbjct: 661 ISEIVNERVKDINDYLKEGQIVKVKVIQTDEKGRVRLS 698
>gi|402565951|ref|YP_006615296.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cepacia
GG4]
gi|402247148|gb|AFQ47602.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cepacia
GG4]
Length = 715
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/693 (59%), Positives = 548/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +Q+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ +++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAQGDLLAAYQLRDKQARSTKLKEVYSATSAKLEEDALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2M]
gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2]
gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2]
gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2M]
Length = 715
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/693 (60%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL E+++L A++FGHE+M+ AI+AI+ELV++ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ I++ ++ AYQI++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTEIAQPELLAAYQIRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|120609946|ref|YP_969624.1| polynucleotide phosphorylase/polyadenylase [Acidovorax citrulli
AAC00-1]
gi|187470931|sp|A1TLL2.1|PNP_ACIAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120588410|gb|ABM31850.1| 3' exoribonuclease [Acidovorax citrulli AAC00-1]
Length = 758
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/690 (60%), Positives = 541/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +E GEIARQAT +VLV+I+DTV+LATVV+ K +FFPLT
Sbjct: 3 MFNKVTKTFQWGDKTVVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I VS ALS+S +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL EDI+L A++FGHE+ +IAINAI+ELV++ G+ +W P KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGAVVFGHEQGRIAINAIHELVRDAGKPVWDWQPAAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
I+K+ ++E K+R AYQI++KQ R + S + SL E D + +L+D
Sbjct: 243 PFIAKVTQLAEEKLRAAYQIRSKQARTQALREASASVLESL-KAEGADFDAVKVEALLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D FM HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+ IR LTEETGTQI+I+++G ITIAS
Sbjct: 542 AMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGTQINIDEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE++T V+IGK+Y G V+++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDSAKADEAKRRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLTEGQVVKVKVLETDEKGRVKLSM 691
>gi|359797098|ref|ZP_09299685.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
arsenitoxydans SY8]
gi|359364866|gb|EHK66576.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
arsenitoxydans SY8]
Length = 720
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/695 (61%), Positives = 546/695 (78%), Gaps = 6/695 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +V+VSIEDTV+LATVV+ K FFPLT
Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPE + NE+Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL+IS +PF GP+G A+VGYIDG+Y LNPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFSGPIGAARVGYIDGQYALNPTATQLKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L +++GHE+M+ INAI+ELV++ G+ +W KD+
Sbjct: 181 GTENAVLMVESEADQLSEEVMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQAPAKDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-----DNENLTIDINDIN 358
LI+ + ++ + AYQI+ KQ R + +S D+ + L E+L D ++
Sbjct: 241 ALIAAVTAAAQEGLNAAYQIREKQARTAKLREVSADVSAKLAAAAAEKGESLP-DAVTVD 299
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
I++ LES I+R QIL+ RID R +RPIS+R G+LPR HGS+LFTRG+TQALVVA
Sbjct: 300 NIMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVA 359
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT +DEQ IDALMGE+ D FM+HYNMPPFATG+ GRIGVPKRREIGHGRLAKR+L+P+
Sbjct: 360 TLGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIPL 419
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLI DG K
Sbjct: 420 LPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGK 479
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+L+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 480 FAVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHIL 539
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
KMK + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G
Sbjct: 540 GKMKDALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGT 599
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
I IAS + +EA+RRI +LT V++G++Y G VLRL DFGAI+++L G+DGLLHIS+I
Sbjct: 600 IVIASVDEAQAKEAQRRIVELTADVEVGQIYEGSVLRLLDFGAIVQVLPGRDGLLHISEI 659
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++ R+ I D LK Q+VRVKV+ DD+GR++LS+
Sbjct: 660 ANYRIANINDVLKVGQQVRVKVIEADDKGRLRLSI 694
>gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
MEX-5]
gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
MEX-5]
Length = 714
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/693 (59%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LI+++ ++ + AYQ+++KQ R K + S + + + + D +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEADALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
vietnamiensis G4]
gi|187470949|sp|A4JGD4.1|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4]
Length = 715
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/693 (60%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +Q+K S LDL+VA
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+IAI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ ++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEHGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|387902797|ref|YP_006333136.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. KJ006]
gi|387577689|gb|AFJ86405.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. KJ006]
Length = 713
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/693 (60%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 1 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 61 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +Q+K S LDL+VA
Sbjct: 121 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+IAI+AI+ELV+ G+ + +W P K++
Sbjct: 181 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVREGGKPEWDWQPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ ++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 241 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 421 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEHGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 541 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 601 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 661 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693
>gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase [Burkholderia sp. 383]
gi|123742554|sp|Q39EE1.1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383]
Length = 715
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/693 (59%), Positives = 549/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +Q+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A++FGHE+M++AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN----LTIDINDINC 359
LI+++ ++++ + AYQ+++KQ R K + + L ++ + + D +
Sbjct: 243 PLIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDASAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSDGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
AMMD]
gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
MC40-6]
gi|122322637|sp|Q0BDC6.1|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702626|sp|B1YTR1.1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD]
gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
MC40-6]
Length = 714
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/693 (59%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN----LTIDINDINC 359
LI+++ ++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDAQAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|170733613|ref|YP_001765560.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
cenocepacia MC0-3]
gi|226702627|sp|B1JVP5.1|PNP_BURCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169816855|gb|ACA91438.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
MC0-3]
Length = 715
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/693 (59%), Positives = 550/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL E+++L A++FGHE+M+IAI+AI+ELV++ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ ++++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+IT+KI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
IOP40-10]
gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
IOP40-10]
Length = 714
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/693 (59%), Positives = 545/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LI+++ ++ + AYQ+++KQ R K + S + + + D +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEEALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis
Bu]
Length = 715
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/693 (60%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +Q+K S LDL+VA
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A++FGHE+M+IAI+AI++LV++ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHDLVRDGGKPEWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ ++++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTAAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|332528747|ref|ZP_08404724.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
ATCC 19624]
gi|332041813|gb|EGI78162.1| polynucleotide phosphorylase/polyadenylase [Hylemonella gracilis
ATCC 19624]
Length = 717
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/690 (60%), Positives = 545/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI K+F++G + +++E GEIARQ++ +VLV+++DTV+LATVV+ K +FFPLT
Sbjct: 3 MFNKITKTFQWGQHTVTMETGEIARQSSGAVLVNVDDTVVLATVVASKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK+YAAG+IPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V++ +S+
Sbjct: 63 VDYLEKSYAAGKIPGSFFKREGRPSEYETLTSRLIDRPIRPLFPEGFFNEVQVVIHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DI ++I S AL+IS +PF GP+G A+VGYI+G+Y+LNP Q K S +DL+VA
Sbjct: 123 NPEVDADIPAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+I+L A++FGH++ KIAINAI++LV++ G+ +W KD+
Sbjct: 183 GTETAVLMVESEALQLSEEIMLGAVVFGHDQGKIAINAIHDLVRDAGKPAWDWKAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K++ + E K+R AYQI+NKQ R + + + L + + + D + +L+D
Sbjct: 243 ALIAKVVALGEEKLRAAYQIRNKQSRTQACREAYAAVKAGLAE-QGVEFDDVKVEGLLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++ +R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALV+ TLGT
Sbjct: 302 IEARTVRGQILAGEPRIDGRDTRTVRPIEIRDSVLPRTHGSALFTRGETQALVITTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L++AGVP+ HVAGIAMGLIK+ K +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMNAGVPLKAHVAGIAMGLIKEDNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQA 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + K E+S+FAPRL T+KI+P KIRDVIGKGG+TIR LTEETGTQIDI ++G ITIAS
Sbjct: 542 AVGEAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGTQIDIAEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
S +EAKRRIE++T V+IGKVY G + ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 TESAKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVLETDEKGRVKLSM 691
>gi|206560707|ref|YP_002231472.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
cenocepacia J2315]
gi|421867939|ref|ZP_16299591.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
H111]
gi|444359660|ref|ZP_21160957.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
BC7]
gi|444369262|ref|ZP_21169023.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
K56-2Valvano]
gi|257096670|sp|B4E5M6.1|PNP_BURCJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|198036749|emb|CAR52649.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
J2315]
gi|358071870|emb|CCE50469.1| Polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
H111]
gi|443599337|gb|ELT67626.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
K56-2Valvano]
gi|443601617|gb|ELT69754.1| polyribonucleotide nucleotidyltransferase [Burkholderia cenocepacia
BC7]
Length = 713
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/693 (59%), Positives = 550/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 1 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 61 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +Q+K S LDL+VA
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A++FGHE+M+IAI+AI+ELV++ G+ + +W P K++
Sbjct: 181 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ ++++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 241 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 421 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 541 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 601 TIASTSSDGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 661 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693
>gi|293603832|ref|ZP_06686247.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
ATCC 43553]
gi|292817669|gb|EFF76735.1| polyribonucleotide nucleotidyltransferase [Achromobacter piechaudii
ATCC 43553]
Length = 720
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/694 (61%), Positives = 545/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +V+VSIEDTV+LATVV+ K FFPLT
Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPE + NE+Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL+IS +PF GP+G A+VGYIDG+Y LNPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYALNPTASQLKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L +++GHE+M+ INAI+ELV++ G+ + +W KD+
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPEWDWQAPAKDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 359
LI+ + ++ + AYQI+ KQ R + +S D+ + L D ++
Sbjct: 241 ALIAAVTAAAQEGLNAAYQIREKQARTAKLREVSADVSAKLAAAAAEKGESAPDAVTVDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I++ LES I+R QIL+ RID R +RPIS+R G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 IMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ IDALMGE+ D FM+HYNMPPFATG+ GRIGVPKRREIGHGRLAKR+L+P+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIPLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLI DG K
Sbjct: 421 PAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILT 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IAS + +EA+RRI +LT V++G++Y G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQMYEGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q+VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSI 694
>gi|413958296|ref|ZP_11397535.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. SJ98]
gi|413940876|gb|EKS72836.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. SJ98]
Length = 712
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/693 (60%), Positives = 545/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K FK+G + + +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 1 MFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 61 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP + DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 121 NPDVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P K++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ I++ ++ AYQ++NKQ R K + + L + + D +
Sbjct: 241 ALIARVTEIAKPELEAAYQLRNKQARSAKLKEVYAATSAKLAEEAATGGTVAADAATVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 421 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTSQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM VP ELS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 541 KMTAAVPTTNTELSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +AK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I
Sbjct: 601 TIASTSAEGMADAKKRIENITAEVEVGQVYEGPVLKLLDFGAIVNILPGKDGLLHISEIV 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q V+VKV+ D++GR++LS
Sbjct: 661 NERVKDINDYLKEGQIVKVKVIQTDEKGRVRLS 693
>gi|222110082|ref|YP_002552346.1| polynucleotide phosphorylase/polyadenylase [Acidovorax ebreus TPSY]
gi|254782718|sp|B9MEL0.1|PNP_DIAST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221729526|gb|ACM32346.1| polynucleotide phosphorylase, phosphorolytic RNA-binding
[Acidovorax ebreus TPSY]
Length = 727
Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/690 (60%), Positives = 541/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++G + +E GEIARQA+ +VLV+I+DTV+LATVV K +FFPLT
Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I VS ALS+S +PF GP+G A+VGY++G+Y+LNP K S LDL+VA
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGHE+ K+AINAI+ELV++ G+ +W P KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
T I+K+ ++E K+R AYQI++KQ R + S + SL E + D + +L+D
Sbjct: 243 TFIAKVTALAEDKLRAAYQIRSKQARTQALREASASVLESL-KGEGVEFDAVKVEALLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ LP+ +
Sbjct: 362 RDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLPSKD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+TIR LT+ETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ EAKRRIE++T V++GKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TEAAKADEAKRRIEEITAEVEVGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L+E Q V+VKVL DD+GR+KLSM
Sbjct: 662 EKVGDYLQEGQVVKVKVLETDDKGRVKLSM 691
>gi|107023192|ref|YP_621519.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
cenocepacia AU 1054]
gi|116690274|ref|YP_835897.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
cenocepacia HI2424]
gi|123244852|sp|Q1BV09.1|PNP_BURCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470943|sp|A0K927.1|PNP_BURCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|105893381|gb|ABF76546.1| 3' exoribonuclease [Burkholderia cenocepacia AU 1054]
gi|116648363|gb|ABK09004.1| 3' exoribonuclease [Burkholderia cenocepacia HI2424]
Length = 715
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/693 (59%), Positives = 550/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL E+++L A++FGHE+M+IAI+AI+ELV++ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ ++++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+IT+KI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|163855920|ref|YP_001630218.1| polynucleotide phosphorylase [Bordetella petrii DSM 12804]
gi|226702623|sp|A9IGJ9.1|PNP_BORPD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|163259648|emb|CAP41949.1| polyribonucleotide nucleotidyltransferase [Bordetella petrii]
Length = 719
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/694 (60%), Positives = 548/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +VLVS++DTV+LATVV+ K FFPLT
Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVLVSVDDTVVLATVVAAKKAKPGQTFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ NE+Q+V++ +SV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVLHTVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI ++IG S AL+IS +PF GP+G A+VGY+DG+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSQMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+KQL ED++L +++GHE+M+ AINAI++LV++ G+ W P K++
Sbjct: 181 GTENAVLMVESEAKQLSEDVMLGGVVYGHEQMQAAINAIHDLVRDAGKPDWEWQPEPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN----DINC 359
LI+ + ++ K+ AYQ + KQ R +N+ D++++L + ++
Sbjct: 241 ALIAAVTAAAQEKLVAAYQERQKQARTALLRNVYADVHAALAEQAAAAGQDAPDAVTVDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE++I+R QIL+ RID R +RPI IR G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARIVRGQILNGEPRIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKRAL+ +L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALVSLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P + F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLI D K
Sbjct: 421 PAHEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLQDHVAGVAMGLILDDGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTQNGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMREALEGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IAS + +EA+RRI +LT V++G+VY G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q+VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSV 694
>gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
Length = 706
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/688 (60%), Positives = 541/688 (78%), Gaps = 4/688 (0%)
Query: 69 IKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIE 128
+K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLTVDYIE
Sbjct: 1 MKEFQWGQHKVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIE 60
Query: 129 KAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQID 188
K Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSVNP+I
Sbjct: 61 KTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIP 120
Query: 189 PDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA 248
DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT Q+K S LDL+VAGTE+A
Sbjct: 121 ADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRLDLVVAGTERA 180
Query: 249 IITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK 308
++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+ L ++
Sbjct: 181 VLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDEALNAR 240
Query: 309 IINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINCILYDL 364
+ +++ ++ AYQI++KQ R K + + L ++ + D + IL+DL
Sbjct: 241 VTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGNILFDL 300
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E+KI+R QIL RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVATLGT
Sbjct: 301 EAKIVRGQILGGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKG 360
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ LP+ ++
Sbjct: 361 DEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADE 420
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K +L+D
Sbjct: 421 FGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD 480
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL KMK
Sbjct: 481 ILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEA 540
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++TIAS
Sbjct: 541 VAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVVTIAST 600
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I ++RV
Sbjct: 601 NSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIVNERVK 660
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLS 752
I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 661 DINDYLKEGQQVKVKVIQTDEKGRVRLS 688
>gi|452125047|ref|ZP_21937631.1| polynucleotide phosphorylase/polyadenylase [Bordetella holmesii
F627]
gi|452128456|ref|ZP_21941033.1| polynucleotide phosphorylase/polyadenylase [Bordetella holmesii
H558]
gi|451924277|gb|EMD74418.1| polynucleotide phosphorylase/polyadenylase [Bordetella holmesii
F627]
gi|451925503|gb|EMD75641.1| polynucleotide phosphorylase/polyadenylase [Bordetella holmesii
H558]
Length = 721
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/694 (60%), Positives = 548/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG + + +E GEIARQA+ +VLVS+EDTV+LATVV+ K FFPLT
Sbjct: 1 MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQTFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPE + NE+Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI ++IG S AL+IS +PF GP+G A+VGY+DG+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTASQLKTSKMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L ++FGHE+M+ A+NAI++LV++ G+ + NW P K+
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAVNAIHDLVRDAGKPEWNWAPAAKND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENL----TIDINDINC 359
LI+ + ++ + AYQI+ KQ R +++ D+ + L + D ++
Sbjct: 241 ALIAAVTAAAQEGLTAAYQIREKQARTTKLRDVYADVSAKLAEQAAAAGQDAPDSVTVDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE++++R QIL+ RID R +RPIS+R G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKR+L+PVL
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVPVL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVP ++HVAG+AMGLI + K
Sbjct: 421 PKPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPTTDHVAGVAMGLILEDGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMRDSLDGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IAS + +EA+RRI +LT V++G+VY G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDETQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q+VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSV 694
>gi|295676033|ref|YP_003604557.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1002]
gi|295435876|gb|ADG15046.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1002]
Length = 711
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/693 (60%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K FK+G + + +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKIVKEFKWGQHTVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYIEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LI+++ +++ + AYQI++KQ R K + S + + D +
Sbjct: 243 ALIARVGELAQADLLAAYQIRDKQARSTKLKEVYAATSAKLEEEAAAAGTVAADKASVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G +
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAKRRIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTNSEGMAEAKRRIEAITMEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>gi|121593373|ref|YP_985269.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. JS42]
gi|187470958|sp|A1W4L8.1|PNP_ACISJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120605453|gb|ABM41193.1| 3' exoribonuclease [Acidovorax sp. JS42]
Length = 727
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/690 (60%), Positives = 541/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++G + +E GEIARQA+ +VLV+I+DTV+LATVV K +FFPLT
Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I VS ALS+S +PF GP+G A+VGY++G+Y+LNP K S LDL+VA
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGHE+ K+AINAI+ELV++ G+ +W P KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
T I+K+ ++E K+R AYQI++KQ R + S + SL E + D + +L+D
Sbjct: 243 TFIAKVTALAEGKLRAAYQIRSKQARTQALREASASVLESL-KGEGVEFDAVKVEALLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ LP+ +
Sbjct: 362 RDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLPSKD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+TIR LT+ETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ EAKRRIE++T V++GK+Y G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TEAAKADEAKRRIEEITAEVEVGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L+E Q V+VKVL DD+GR+KLSM
Sbjct: 662 EKVGDYLQEGQIVKVKVLETDDKGRVKLSM 691
>gi|423016040|ref|ZP_17006761.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
xylosoxidans AXX-A]
gi|338781099|gb|EGP45495.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
xylosoxidans AXX-A]
Length = 718
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/694 (61%), Positives = 543/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +V+VSIEDTV+LATVV+ K FFPLT
Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPE + NE+Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL+IS +PF GP+G A+VGYIDG+Y +NPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+I+L +++GHE+M+ INAI+ELV++ G+ +W KD+
Sbjct: 181 GTENAVLMVESEADQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQAPAKDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 359
LI+ + ++ + AYQI+ KQ R + +S D+ + L D ++
Sbjct: 241 ALIAAVTAAAQEGLNAAYQIREKQARTAKLREVSADVSAKLAAAAAEKGEALPDAVTVDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I++ LES I+R QIL+ RID R +RPIS+R G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 IMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ IDALMGE+ D FM+HYNMPPFATG+ GRIGVPKRREIGHGRLAKR+L+P+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIPLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLI DG K
Sbjct: 421 PAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IAS + +EA+RRI +LT V++G+VY G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q+VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSI 694
>gi|311104446|ref|YP_003977299.1| polyribonucleotide nucleotidyltransferase [Achromobacter
xylosoxidans A8]
gi|310759135|gb|ADP14584.1| polyribonucleotide nucleotidyltransferase [Achromobacter
xylosoxidans A8]
Length = 720
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/694 (60%), Positives = 543/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +V+VSIEDTV+LATVV+ K FFPLT
Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPE + NE+Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL+IS +PF GP+G A+VGYIDG+Y +NPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+I+L +++GH++M+ INAI+ELV++ G+ +W KD+
Sbjct: 181 GTENAVLMVESEADQLSEEIMLGGVVYGHQQMQAVINAIHELVKDAGKPDWDWQAPAKDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 359
LI+ + ++ + AYQI+ KQ R + +S D+ + L D ++
Sbjct: 241 ALIAAVTAAAQEGLNAAYQIREKQARTTKLREVSADVSAKLAAAAAEKGEALPDAVTVDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I++ LES I+R QIL+ RID R +RPIS+R G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 IMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ IDALMGE+ D FM+HYNMPPFATG+ GRIGVPKRREIGHGRLAKR+L+P+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIPLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLI DG K
Sbjct: 421 PAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IAS + +EA+RRI +LT V++G++Y G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQIYEGAVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q+VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSI 694
>gi|337280295|ref|YP_004619767.1| polyribonucleotide nucleotidyltransferase [Ramlibacter
tataouinensis TTB310]
gi|334731372|gb|AEG93748.1| Candidate polyribonucleotide nucleotidyltransferase protein
[Ramlibacter tataouinensis TTB310]
Length = 743
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/690 (59%), Positives = 537/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F +G + +++E GEIARQ+ +V+V+I+DTV+LATVV+ K +FFPLT
Sbjct: 3 IFNKVSKTFTWGQHTVTLETGEIARQSGGAVVVNIDDTVVLATVVASKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ LS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFFNEVHVVIHTLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++IG S AL+IS +PF GP+G A+VGY++G+Y+LNP Q K+S LDL+VA
Sbjct: 123 NPEVDADIAAMIGTSAALAISGIPFAGPIGAARVGYVNGEYVLNPGQTQRKESQLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QLPE+++L A++FGHE+ KIAINAI+ELV+ G+ +W P +D+
Sbjct: 183 GTEAAVLMVESEAQQLPEEVMLGAVVFGHEQGKIAINAIHELVREAGKPVWDWQPPAQDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
I+K+ ++E K+R AYQI++KQ R + S + SL E D + +L+
Sbjct: 243 PFIAKVKALAEEKLRAAYQIRSKQARTQALREASASVLDSL-KAEGSEFDAAKVADLLFG 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+ES I+R QIL RID R +RPI IR G+LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 302 IESSIVRSQILAGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D FM HYNMPPFATG++GR+G KRREIGHGRLAKRAL LP
Sbjct: 362 RDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK G + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKQGNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+ IR LT+ETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTDETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ +EAK+RIE++T V+IGKVY G + ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDAAKAEEAKKRIEQITAEVEIGKVYEGPITKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L E Q VRVKVL D++GR+KLSM
Sbjct: 662 EKVGDYLSEGQVVRVKVLETDEKGRVKLSM 691
>gi|33602856|ref|NP_890416.1| polynucleotide phosphorylase/polyadenylase [Bordetella
bronchiseptica RB50]
gi|427815872|ref|ZP_18982936.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica 1289]
gi|81429864|sp|Q7WCQ0.1|PNP_BORBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33577298|emb|CAE35855.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica RB50]
gi|410566872|emb|CCN24441.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica 1289]
Length = 719
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/694 (60%), Positives = 547/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG + + +E GE+ARQA+ +VLVS+EDTV+LATVV+ K + +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ N++Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP IDPDI ++IG S AL+IS +PF GP+G A+VGY+DG+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+KQL E+I+L ++FGHE+M+ AINAI++LV++ G+ +W P K++
Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQTAINAIHDLVRDAGKPDWDWQPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 359
LI+ + ++ + AYQI+ KQ R + + + +++ + D ++
Sbjct: 241 ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE++I+R QIL+ RID R +RPISIR G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKRALLP+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLPLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP ++HVAG+AMGLI D K
Sbjct: 421 PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IAS + +EA+RRI +LT V++G++Y G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQPVRVKVIEADDKGRLRLSI 694
>gi|33591966|ref|NP_879610.1| polynucleotide phosphorylase [Bordetella pertussis Tohama I]
gi|33597949|ref|NP_885592.1| polynucleotide phosphorylase/polyadenylase [Bordetella
parapertussis 12822]
gi|384203269|ref|YP_005589008.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
CS]
gi|408416352|ref|YP_006627059.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis
18323]
gi|410421330|ref|YP_006901779.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica MO149]
gi|410473916|ref|YP_006897197.1| polyribonucleotide nucleotidyltransferase [Bordetella parapertussis
Bpp5]
gi|412341810|ref|YP_006970565.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica 253]
gi|427818417|ref|ZP_18985480.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica D445]
gi|427825717|ref|ZP_18992779.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica Bbr77]
gi|81425386|sp|Q7VZU0.1|PNP_BORPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81426411|sp|Q7W570.1|PNP_BORPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33571610|emb|CAE41100.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis
Tohama I]
gi|33574378|emb|CAE38716.1| polyribonucleotide nucleotidyltransferase [Bordetella
parapertussis]
gi|332381383|gb|AEE66230.1| polynucleotide phosphorylase/polyadenylase [Bordetella pertussis
CS]
gi|401778522|emb|CCJ63952.1| polyribonucleotide nucleotidyltransferase [Bordetella pertussis
18323]
gi|408444026|emb|CCJ50727.1| polyribonucleotide nucleotidyltransferase [Bordetella parapertussis
Bpp5]
gi|408448625|emb|CCJ60309.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica MO149]
gi|408771644|emb|CCJ56448.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica 253]
gi|410569417|emb|CCN17521.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica D445]
gi|410590982|emb|CCN06077.1| polyribonucleotide nucleotidyltransferase [Bordetella
bronchiseptica Bbr77]
Length = 719
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/694 (60%), Positives = 547/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG + + +E GE+ARQA+ +VLVS+EDTV+LATVV+ K + +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ N++Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP IDPDI ++IG S AL+IS +PF GP+G A+VGY+DG+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+KQL E+I+L ++FGHE+M+ AINAI++LV++ G+ +W P K++
Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPDWDWQPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 359
LI+ + ++ + AYQI+ KQ R + + + +++ + D ++
Sbjct: 241 ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE++I+R QIL+ RID R +RPISIR G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKRALLP+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLPLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP ++HVAG+AMGLI D K
Sbjct: 421 PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IAS + +EA+RRI +LT V++G++Y G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQPVRVKVIEADDKGRLRLSI 694
>gi|375106904|ref|ZP_09753165.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium JOSHI_001]
gi|374667635|gb|EHR72420.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium JOSHI_001]
Length = 768
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/690 (60%), Positives = 547/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQ++ +V+V +EDTV+LATVV+ + + +FFPLT
Sbjct: 3 MFNKVTKTFQWGQHSVTLETGEIARQSSGAVVVHMEDTVVLATVVAKSEAKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+VV+VLS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFFNEVQVVVHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DIA++IG S AL+IS +PF GP+G A+VGY++G+Y+LNP QL S +DL+VA
Sbjct: 123 NPEVQADIAALIGTSAALAISGIPFNGPIGAARVGYVNGEYVLNPGKTQLADSKMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L E+I+L A+++GH++ KIAINAINELV++ G+ + W K++
Sbjct: 183 GTEAAVLMVESEAQMLSEEIMLGAVVYGHDQGKIAINAINELVRDAGKPEWQWQAPAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
I+K+ +++ +R AYQI++KQ R ++++ ++ ++L E + D ++ +L++
Sbjct: 243 PFIAKVNALADGPLRAAYQIRSKQARTQACRDVTSNVLAAL-KAEGIEFDKVEVEGLLFE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+ES+I+R QIL RID R +RPI IRTG+LPRTHGS+LFTRG+TQA+VVATLGT
Sbjct: 302 IESRIVRGQILAGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAVVVATLGTD 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ LP+
Sbjct: 362 RDAQRIDALAGEFEERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAALPSKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F YSIR+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIKDG + +L+
Sbjct: 422 DFPYSIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDGNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTGGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQD 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V K E+S+FAPRL T+KI+P KIRDVIGKGG+TIR LTEETG IDI ++G ITIAS
Sbjct: 542 AVGGAKTEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGCTIDIGEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ + AK+RI ++T +IGKVY G V ++ DFGA+I IL GKDGLLHISQI+ +RV
Sbjct: 602 TDADKAEFAKKRITEITAEAEIGKVYEGPVTKILDFGALINILPGKDGLLHISQIAHQRV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ DFLKE Q V+VKVL D++GRIKLSM
Sbjct: 662 EKVEDFLKEGQVVKVKVLETDEKGRIKLSM 691
>gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
Length = 711
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/693 (60%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K FK+G + + +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRLQMKESALDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LI+++ +++ + AYQI++KQ R K + S + D +
Sbjct: 243 ALITRVSELAQADLLAAYQIRDKQARSTKLKEVYAATSAKLEEEAAAAGTAAADKASVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQSIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G +
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS NS EAKRRIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTNSEGMAEAKRRIEAITMEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
C4D1M]
gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
C4D1M]
Length = 715
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/693 (59%), Positives = 549/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+KI+K FK+G + + +E GEIARQA+ +V+V +EDTVILATVV K +FFPLT
Sbjct: 3 MFSKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVILATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP + DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 123 NPDVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L ++FGHE+M+IAI+AI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ +++ ++ AYQI++KQ R K + + + L ++ + D +
Sbjct: 243 PLIARVTELAQAELLAAYQIRDKQARSSKLKEVYAAVSAKLEEDAAASGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N]
gi|123765982|sp|Q2KWI6.1|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N]
Length = 718
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/694 (60%), Positives = 549/694 (79%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG + + +E GEIARQA+ +VLVS+EDTV+LATVV+ K +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ NE+Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDI ++IG S AL+IS +PF GP+G A+V Y++G+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVAYVEGQYLLNPTASQLKSSKMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L ++FGHE+M+ AINAI++LV++ G+ + W P K++
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPEWTWSPAAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENL----TIDINDINC 359
LI+ + ++ + AYQI+ KQ R + + ++ + L + D ++
Sbjct: 241 ALIAAVTAAAQEGLSAAYQIREKQARTTKLREVYAEVSAKLAEQAAAAGQDAPDGVTVDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE++++R QIL+ RID R +RPIS+R G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKR+L+PVL
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVPVL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVPI++HVAG+AMGLI + K
Sbjct: 421 PKPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPITDHVAGVAMGLILENGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMRESLDGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IAS + +EA+RRI +LT V++G+VY G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDEGQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q+VRVKV+ D++GR++LS+
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADEKGRLRLSV 694
>gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1001]
gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1001]
Length = 715
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/693 (59%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K++K FK+G + + +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K S LDL+VA
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSALDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A++FGHE+M++AI+AI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQVAIDAIHDLVREGGKPEWDWQPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ +++ + AYQI++KQ R K + + + L + + D +
Sbjct: 243 PLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>gi|407712803|ref|YP_006833368.1| polyribonucleotide nucleotidyltransferase [Burkholderia
phenoliruptrix BR3459a]
gi|407234987|gb|AFT85186.1| polyribonucleotide nucleotidyltransferase [Burkholderia
phenoliruptrix BR3459a]
Length = 713
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/693 (59%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K++K FK+G + + +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 1 MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 61 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K S LDL+VA
Sbjct: 121 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSALDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A++FGHE+M++AI+AI++LV+ G+ + +W P K++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQVAIDAIHDLVREGGKPEWDWQPAAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ +++ + AYQI++KQ R K + + + L + + D +
Sbjct: 241 PLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATVGN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 361 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 421 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 541 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 601 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 661 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 693
>gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus
flagellatus KT]
gi|123078691|sp|Q1GXD2.1|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT]
Length = 714
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/688 (60%), Positives = 538/688 (78%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I K+ YG +++++E GEIARQA +V+VS DTV+L +VV ++ +FFPLTV
Sbjct: 1 MTAIKKTITYGQHELTLETGEIARQADGAVMVSYGDTVVLVSVVGKREVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRP+RPLFPE + NE+Q+V V+S +
Sbjct: 61 DYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSSD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+ID DI +IIG S AL+IS +PF GP+G A+VGYI+G+Y+LNPT QLK++ LDL+VA
Sbjct: 121 PEIDADIPAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTASQLKETALDLVVAA 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+K+LPED++L ++++GHE+M+I I+AINEL VG++ +W P +
Sbjct: 181 TESAVLMVESEAKELPEDVMLGSVVYGHEQMQIVISAINELAAEVGKEPWDWAPPEPNTE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ ++ I +AY+IK+K R I + LI T + N+I I ++L
Sbjct: 241 LIAKVEALAGADINEAYKIKSKSARSSKLDEIRSRVLGELITETTSTSEANEIKSIFHNL 300
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E+K++R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQALVVATLGT R
Sbjct: 301 EAKVVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGR 360
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
DEQ IDAL GE+ D FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRALL VLP+ +
Sbjct: 361 DEQIIDALQGEYADRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAVLPSQEE 420
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y+IR+VSEITESNGSSSMASVCGGCL+LLDAGVP+ HVAGIAMGLIK+G +V +L+D
Sbjct: 421 FGYTIRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRVAVLTD 480
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+++AL +AK+G +IL MK
Sbjct: 481 ILGDEDHLGDMDFKVAGTESGITALQMDIKITGITAEIMRVALSQAKEGRLHILGLMKEA 540
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
V + ELS+FAPR+IT+KI+P KIRDVIGKGG+ IR LTEETGT IDI ++G I I
Sbjct: 541 VGEQPQELSEFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEEDGTIKIGCT 600
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ +G+EAK+RIE +T V++G+VY G VL+L DFGAI+ +L GKDGLLHISQI+ +RVN
Sbjct: 601 SAEAGEEAKKRIEAITAEVEVGQVYDGTVLKLLDFGAIVSLLPGKDGLLHISQIAHQRVN 660
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ DFLKE Q V+VKVL +DD+GR++LS
Sbjct: 661 AVADFLKEGQVVKVKVLEVDDKGRVRLS 688
>gi|348590479|ref|YP_004874941.1| polyribonucleotide nucleotidyltransferase [Taylorella
asinigenitalis MCE3]
gi|347974383|gb|AEP36918.1| Polyribonucleotide nucleotidyltransferase [Taylorella
asinigenitalis MCE3]
Length = 732
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/693 (60%), Positives = 550/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK SFKYG + ++IE GEIARQA+ +V+V++ TV+LATVV+ K+ + +FFPLT
Sbjct: 1 MFNKFSTSFKYGDHDVTIETGEIARQASGAVVVTMGGTVVLATVVAAKEAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EKAYAAGRIPG +FKREGKP+E+ET+ SRLIDRP+RPLFPEG+ NE+Q++V+VLSV
Sbjct: 61 VDYVEKAYAAGRIPGGYFKREGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIVHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+IDPDIAS+IG S AL++S +PF GPLG A+VGYIDG+Y+LNPT Q+K S +DL+VA
Sbjct: 121 DPEIDPDIASMIGSSAALAVSGVPFNGPLGAARVGYIDGQYVLNPTESQIKDSQMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+KQL ED++L ++FGHE++++AINAI+ELV+ G+ + +W K++
Sbjct: 181 GTEQAVLMVESEAKQLSEDVMLGGVVFGHEQLQLAINAIHELVKQAGKPEWDWVAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN-ENLTIDIND---INC 359
LIS + +E +++AY I+ KQ+R K +S + SL E D D I+
Sbjct: 241 ELISAVREQAEASLKEAYSIREKQLRSNKLKEVSAQVKESLAKKAEEAKTDAPDEVEIDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+ I+R QIL+ RID R +RPISIR G+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEASIVRGQILNGEPRIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ +D++MGE + FMLHYNMPPFATG++GR G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKQDEQIVDSVMGEVREHFMLHYNMPPFATGEVGRFGSPKRREIGHGRLAKRALVATL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
PN + F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLIK+G K
Sbjct: 421 PNQDDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT GITALQMDIKI GI +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGINKEIMQVALAQAREGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ + + ELS FAPR+I++ I+P K+RDVIGKGG+TIR+LTEETG QI+I D+G I
Sbjct: 541 KMREAISGSREELSSFAPRMISMTINPEKVRDVIGKGGATIRSLTEETGCQIEITDDGHI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS + + QEA+RRIE+LT V+IGKVY G V+++ DFG +++IL GKDGLLHIS+I+
Sbjct: 601 TIASADLEAAQEAQRRIEELTAEVEIGKVYEGTVIKMLDFGGVLQILPGKDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ R+ I D L QKV VKV+ DDRGRI+LS
Sbjct: 661 NFRIKDINDVLSIGQKVNVKVIESDDRGRIRLS 693
>gi|186476768|ref|YP_001858238.1| polynucleotide phosphorylase/polyadenylase [Burkholderia phymatum
STM815]
gi|226702629|sp|B2JDN2.1|PNP_BURP8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|184193227|gb|ACC71192.1| Polyribonucleotide nucleotidyltransferase [Burkholderia phymatum
STM815]
Length = 712
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/693 (60%), Positives = 541/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNK++K FK+G + + +E GEIARQA+ +VLV +EDTV+LATVV K +FFPLT
Sbjct: 3 LFNKVVKEFKWGQHTVRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++V+S+
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVMSI 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRSQIKGSRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + W K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKAEWEWQAAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LIS++ I+ +++ AYQ ++KQ R K + + + D +
Sbjct: 243 ALISRVNEIAYNELLSAYQTRDKQARSTKLKEVYAATQAKLEEEAAAAGTVAADKASVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V ELS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGVNTELSAYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEVEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
phytofirmans PsJN]
gi|226702630|sp|B2T2E3.1|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia
phytofirmans PsJN]
Length = 718
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/693 (59%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L ++FGHE+M+IAI+AI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LI+++ +++ + AYQ+++KQ R K + SK + + D +
Sbjct: 243 PLIARVTELAQADLLAAYQLRDKQARSAKLKEVYAATSKKLEEDAAAGGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQA+VVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILS 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V LS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>gi|221068616|ref|ZP_03544721.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
KF-1]
gi|220713639|gb|EED69007.1| Polyribonucleotide nucleotidyltransferase [Comamonas testosteroni
KF-1]
Length = 747
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/690 (59%), Positives = 546/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQA+ +VLV+I+DTV+LATVV K + +FFPLT
Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ N++ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I VS AL++S LPF GP+G A+VGYI+G+Y+LNP Q K S +DL+VA
Sbjct: 123 NPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QLPE+++L A++FGHE+ KIAI+AI++LV+ G+ +W KD+
Sbjct: 183 GTESAVLMVESEAQQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K++ + E K+R AYQ +NKQ+R L + D+ ++L + + + D + +L+D
Sbjct: 243 ALIAKVVELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTE-QGVAFDGVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +RPI IR+ +LPRTHGS+LFTRG+TQALV++TLGT
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD QKIDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL LP
Sbjct: 362 RDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ K +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+TIR LTEETGTQI+I ++G ITIA+
Sbjct: 542 AMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK RIE++T V+IGK+Y G ++++ +FGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 TDGAKAEAAKLRIEQITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+E Q V+VKVL DD+GR+KLSM
Sbjct: 662 EKVTDYLQEGQVVKVKVLETDDKGRVKLSM 691
>gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1003]
gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1003]
Length = 715
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/693 (59%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K++K FK+G + + +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFSKVVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K S LDL+VA
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRAQMKDSALDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A++FGHE+M+ AI+AI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVFGHEQMQAAIDAIHDLVREGGKPEWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ +++ + AYQI++KQ R K + + + L + + D +
Sbjct: 243 PLIARVTELAQADLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAASGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+GI+
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGIV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>gi|254247654|ref|ZP_04940975.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
cenocepacia PC184]
gi|124872430|gb|EAY64146.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Burkholderia
cenocepacia PC184]
Length = 730
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/708 (58%), Positives = 552/708 (77%), Gaps = 8/708 (1%)
Query: 49 DHHSRRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVV 108
+ H +G M +FNK++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV
Sbjct: 7 EMHEYKGATMS----MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVV 62
Query: 109 SCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPE 168
K +FFPLTVDY+EK Y+AG+I G FF+RE +PSE ET+ SRLIDRP+RPLF E
Sbjct: 63 GAKSAKPGQDFFPLTVDYLEKTYSAGKIAGGFFRRECRPSEHETLTSRLIDRPLRPLFSE 122
Query: 169 GYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNP 228
G+ NE+Q+V++VLSVNP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNP
Sbjct: 123 GFYNEVQVVIHVLSVNPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNP 182
Query: 229 TTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQN 288
T +QLK S LDL+VAGTE+A++ VESE+ QL E+++L A++FGHE+M+IAI+AI+ELV++
Sbjct: 183 TRDQLKASSLDLVVAGTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRD 242
Query: 289 VGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE 348
G+ + +W P K++ LI+++ ++++ + AYQ+++KQ R K + + L ++
Sbjct: 243 GGKPEWDWQPAPKNEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDA 302
Query: 349 ----NLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGS 404
+ D + +L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS
Sbjct: 303 LAAGTVAADKATVGNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGS 362
Query: 405 SLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRRE 464
+LFTRG+TQALVVATLGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRRE
Sbjct: 363 ALFTRGETQALVVATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRRE 422
Query: 465 IGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEH 524
IGHGRLAKRAL+ LP+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ H
Sbjct: 423 IGHGRLAKRALVKCLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAH 482
Query: 525 VAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQ 584
VAGIAMGLI +G K +L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q
Sbjct: 483 VAGIAMGLILEGNKFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQ 542
Query: 585 IALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLT 644
+AL +AK+G +IL KM + V +LS+FAPR+IT+KI+P KIRDVIGKGGS IR LT
Sbjct: 543 VALAQAKEGRLHILGKMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALT 602
Query: 645 EETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIR 704
EETGT IDI+D+G++TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+
Sbjct: 603 EETGTTIDISDDGVVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVN 662
Query: 705 ILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+L GKDGLLHIS+I ++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 LLPGKDGLLHISEIVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 710
>gi|385203227|ref|ZP_10030097.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
gi|385183118|gb|EIF32392.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
Length = 716
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/693 (59%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L ++FGHE+M+IAI+AI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWKPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ +++ + AYQ+++KQ R K I + L ++ + D +
Sbjct: 243 PLIARVTELAQADLLAAYQLRDKQARSAKLKEIYAATSAKLEEDAAAGGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V LS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>gi|399116338|emb|CCG19143.1| polyribonucleotide nucleotidyltransferase [Taylorella
asinigenitalis 14/45]
Length = 732
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/693 (61%), Positives = 550/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK SFKYG + ++IE GEIARQA+ +V+V++ TV+LATVV+ K+ + +FFPLT
Sbjct: 1 MFNKFSTSFKYGDHDVTIETGEIARQASGAVVVTMGGTVVLATVVAAKEAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EKAYAAGRIPG +FKREGKP+E+ET+ SRLIDRP+RPLFPEG+ NE+Q++V+VLSV
Sbjct: 61 VDYVEKAYAAGRIPGGYFKREGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIVHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+IDPDIAS+IG S AL+IS +PF GPLG A+VGYIDG+Y+LNPT Q+K S +DL+VA
Sbjct: 121 DPEIDPDIASMIGSSAALAISGVPFNGPLGAARVGYIDGQYVLNPTESQIKDSQMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+KQL ED++L ++FGHE++++AINAI+ELV+ G+ + +W K++
Sbjct: 181 GTEQAVLMVESEAKQLSEDVMLGGVVFGHEQLQLAINAIHELVKQAGKPEWDWVAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN-ENLTIDIND---INC 359
LIS + +E +++AY I+ KQ+R K +S + SL E D D I+
Sbjct: 241 GLISAVREQAEVSLKEAYSIREKQLRSNKLKEVSAQVKESLAKKAEEAGTDAPDEVEIDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+DLE+ I+R QIL+ RID R +RPISIR G+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEASIVRGQILNGEPRIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ +D++MGE + FMLHYNMPPFATG++GR G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKQDEQIVDSVMGEVREHFMLHYNMPPFATGEVGRFGSPKRREIGHGRLAKRALVATL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
PN + F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLIK+G K
Sbjct: 421 PNQDDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT GITALQMDIKI GI +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGINKEIMQVALAQAREGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ + + ELS FAPR+I++ I+P K+RDVIGKGG+TIR+LTEETG QI+I D+G I
Sbjct: 541 KMREAISGSREELSSFAPRMISMTINPDKVRDVIGKGGATIRSLTEETGCQIEITDDGHI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS + + QEA+RRIE+LT V+IGKVY G V+++ DFG +++IL GKDGLLHIS+I+
Sbjct: 601 TIASADLEAAQEAQRRIEELTAEVEIGKVYEGTVIKMLDFGGVLQILPGKDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ R+ I D L QKV VKV+ DDRGRI+LS
Sbjct: 661 NFRIKDINDVLSIGQKVNVKVIESDDRGRIRLS 693
>gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase [Burkholderia xenovorans LB400]
gi|122970578|sp|Q142H7.1|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia
xenovorans LB400]
Length = 716
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/693 (59%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV + +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGARTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L ++FGHE+M+IAI+AI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 359
LI+++ +++ + AYQ+++KQ R K I + L ++ + D +
Sbjct: 243 PLIARVTELAQADLLAAYQLRDKQARSAKLKEIYAATSAKLEEDAAAGGTVAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITREIMQVALAQAKEGRLHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V LS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>gi|350545157|ref|ZP_08914662.1| Polyribonucleotide nucleotidyltransferase [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527048|emb|CCD38988.1| Polyribonucleotide nucleotidyltransferase [Candidatus Burkholderia
kirkii UZHbot1]
Length = 733
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/699 (59%), Positives = 545/699 (77%), Gaps = 5/699 (0%)
Query: 59 MKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
++G +FNKI+K FK+G + + +E GEIARQA+ +V+V +EDTV+LATVV K +
Sbjct: 16 VEGVAMFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTNKPGQD 75
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTVDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V+
Sbjct: 76 FFPLTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVI 135
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
YVLS+NP I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S L
Sbjct: 136 YVLSLNPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESAL 195
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGTE+A++ VESE++QL E+++L A++FGHE+M+ AI+AI+ELV + G+ + +W P
Sbjct: 196 DLVVAGTERAVLMVESEAQQLFEEVMLGAVVFGHEQMQTAIDAIHELVHDGGKPEWDWQP 255
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDI 354
K++ LI+++ I++ ++ AYQ++N+Q R K + S + + + + D
Sbjct: 256 APKNEVLIARVTEIAKPELEAAYQLRNEQARSTKLKEVYAATSAKLAEEAVASGTVAPDA 315
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
+ +L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQA
Sbjct: 316 ATVGNVLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQA 375
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
LVVATLGT DEQ IDAL GE+ + FMLHYNMP FATG+ GR+G PKRREIGHGRLAKRA
Sbjct: 376 LVVATLGTKGDEQSIDALEGEYRERFMLHYNMPSFATGETGRVGSPKRREIGHGRLAKRA 435
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
L+ LP+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI
Sbjct: 436 LVACLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIL 495
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+G K +L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G
Sbjct: 496 EGNKFAVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGR 555
Query: 595 SYILEKM-KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDI 653
+IL KM VP ELS +APR+ITIKI+P KIR VIGKGGS IR LTEETGT IDI
Sbjct: 556 MHILGKMTAAAVPHTNTELSDYAPRMITIKINPEKIRAVIGKGGSVIRALTEETGTTIDI 615
Query: 654 NDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLL 713
+D+G++TIAS ++ EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLL
Sbjct: 616 SDDGVVTIASTSAEGMAEAKKRIENITAEVEVGQVYEGPVLKLLDFGAIVNILPGKDGLL 675
Query: 714 HISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
HIS+ ++RV I D+LKE Q V+VKV+ D++GR++LS
Sbjct: 676 HISEFVNERVKDINDYLKEGQIVKVKVIQTDEKGRVRLS 714
>gi|330817796|ref|YP_004361501.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
BSR3]
gi|327370189|gb|AEA61545.1| Polyribonucleotide nucleotidyltransferase [Burkholderia gladioli
BSR3]
Length = 712
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/693 (60%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNK++K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 LFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S LPF GP+G A+V YID +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYIDSQYVLNPTREQIKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QLPED++L A++FGHE+M++AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEAQQLPEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LI+ I ++ + AYQI++KQ R K + S + + D +
Sbjct: 243 ALIASITAAAQEPLLAAYQIRDKQARSTKLKEVYAATSAKLEADAAAAGTTPADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IR+G+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRSGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRRE+GHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALEQAKEGRLHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKGAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGAVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q V+VKV+ +D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQVVKVKVIQVDEKGRVRLS 695
>gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae
BGR1]
gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae
BGR1]
Length = 709
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/693 (60%), Positives = 544/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNKI+K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K+ +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKNAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S LPF GP+G A+V YID +Y+LNPT +Q+K S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNQYVLNPTRDQIKASSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LI+ + ++ + AYQI++KQ R K + S + + D +
Sbjct: 243 ALIANVTAAAQADLLAAYQIRDKQARSAKLKEVYASTSAKLEAEAAAAGTTAADKATVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI + K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEDNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK V LS+FAPR+IT+KI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKESVSGANTTLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGAVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV I D+LKE Q V++KV+ +D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQVVKIKVIQVDEKGRVRLS 695
>gi|319761758|ref|YP_004125695.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans BC]
gi|330826538|ref|YP_004389841.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans K601]
gi|317116319|gb|ADU98807.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans BC]
gi|329311910|gb|AEB86325.1| polyribonucleotide nucleotidyltransferase [Alicycliphilus
denitrificans K601]
Length = 731
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/690 (59%), Positives = 542/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQA+ +VLV+I+DTV+LATVV+ K+ +FFPLT
Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKNAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S ALS+S +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIATSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QLPED++L A+++GHE+ KIAI+AI+ELV++ G+ +W P KD+
Sbjct: 183 GTETAVLMVESEALQLPEDVMLGAVVYGHEQGKIAIDAIHELVRDAGKPVWDWQPEAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ + E +R AYQ +NKQ+R + + + L + + + D ++ +L+D
Sbjct: 243 ALIAKVAELGEGTLRAAYQNRNKQLRTQACREAYAAVKAGLTE-QGVEFDAVKVDNMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++I+R QIL RID R +RPI IRT +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEARIVRSQILAGEPRIDGRDTRTVRPIEIRTSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D F+ HYNMPPFATG++GR+G KRRE+GHGRLAKRAL+ LP+
Sbjct: 362 RDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREVGHGRLAKRALVACLPSKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ K +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+TIR LT+ETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEISSFAPKLFTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ EAKRRIE++T V+IGKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TEAAKADEAKRRIEEITAEVEIGKVYEGPVTKVLDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L+E Q V+VKVL DD+GR+KLSM
Sbjct: 662 ERVGDYLQEGQIVKVKVLETDDKGRVKLSM 691
>gi|418530554|ref|ZP_13096477.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
ATCC 11996]
gi|371452273|gb|EHN65302.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
ATCC 11996]
Length = 750
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 544/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQA+ +VLV+I+DTV+LATVV K + +FFPLT
Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ N++ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I VS AL++S LPF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTLRKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QLPE+++L A++FGHE+ KIAI+AI++LV+ G+ +W KD+
Sbjct: 183 GTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K++ + E K+R AYQ +NKQ+R L + D+ ++L + + + D + +L+D
Sbjct: 243 ALIAKVVELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTE-QGVAFDGVKVESMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +RPI IR+ +LPRTHGS+LFTRG+TQALV++TLGT
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD QKIDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL LP
Sbjct: 362 RDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ K +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+TIR LTEETGTQI+I ++G ITIA+
Sbjct: 542 AMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK RIE++T V+IGK+Y G ++++ +FGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 TDGAKAEAAKLRIEQITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+E Q V+VKVL DD+GR+KLSM
Sbjct: 662 EKVTDYLQEGQVVKVKVLETDDKGRVKLSM 691
>gi|299530738|ref|ZP_07044153.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
S44]
gi|298721254|gb|EFI62196.1| polynucleotide phosphorylase/polyadenylase [Comamonas testosteroni
S44]
Length = 747
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (58%), Positives = 543/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQA+ +VLV+I+DTV+LATVV K + +FFPLT
Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ N++ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S AL++S +PF GP+G A+VGYI+G+Y+LNP Q K S +DL+VA
Sbjct: 123 NPEVDADIAAMIATSAALAVSGIPFSGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QLPE+++L A++FGHE+ KIAI+AI++LV+ G+ +W KD+
Sbjct: 183 GTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ + E K+R AYQ +NKQ+R L + D+ ++L + + + D + +L+D
Sbjct: 243 ALIAKVAELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTE-QGVAFDGVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +RPI IR+ +LPRTHGS+LFTRG+TQALV++TLGT
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD QKIDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL LP
Sbjct: 362 RDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ K +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+TIR LTEETGTQI+I ++G ITIA+
Sbjct: 542 AMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK RIE++T V+IGK+Y G ++++ +FGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 TDGAKAEAAKLRIEQITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+E Q V+VKVL DD+GR+KLSM
Sbjct: 662 EKVTDYLQEGQVVKVKVLETDDKGRVKLSM 691
>gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
51599]
gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
51599]
Length = 704
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/690 (58%), Positives = 541/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K+F++G++ +++E GEIARQA+ SVLV+I+DT++LATVV+ ++P +FFPLT
Sbjct: 1 MFEIAKKTFQWGNHTVTLETGEIARQASGSVLVTIDDTMVLATVVAAREPKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY EK YAAGRIPG FFKREG+P+E+ET+ +RLIDRPIRPLFPEG++NE+Q+V+ VLS
Sbjct: 61 VDYFEKFYAAGRIPGGFFKREGRPTEKETLTARLIDRPIRPLFPEGFMNEVQVVLTVLSS 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+ID DI ++IG S AL+IS +PF GP+G A+VGYIDG+Y+LNP+ QLK+S LDL+VA
Sbjct: 121 NPEIDADIPAMIGASAALAISGVPFNGPVGAARVGYIDGQYVLNPSASQLKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT++A++ VESE+ +L ED++L A++FGHE+M+ I AI ELV+ G+ + W K+
Sbjct: 181 GTDQAVLMVESEASELSEDVMLGAVVFGHEQMQTVIQAIEELVEAGGKAEWEWTAPEKNT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI ++ ++ +R AY+++ KQ R K I D+ + L EN ++ IL++
Sbjct: 241 ALIERVHGLAGDAMRDAYKLRVKQERSQRIKQIEADVQAQLAAEENPPA-ATEVGDILFE 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+S I+R QIL RID R +RPISIRTG+LPR HGS+LFTRG+TQALVVATLGT+
Sbjct: 300 LQSSIVRNQILSGEPRIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDA+ GE+ + FM+ YNMPP+ATG+ GRIG PKRRE+GHGRLAKRA+ ++P+
Sbjct: 360 RDEQIIDAITGEYRERFMMQYNMPPYATGETGRIGTPKRREVGHGRLAKRAITALVPSQE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F YSIRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K +L+
Sbjct: 420 DFAYSIRLVSEITESNGSSSMASVCGGCLALMDAGVPVERHVAGIAMGLIKEGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +A++ +IL KM+
Sbjct: 480 DILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITREIMQVALAQAREARMHILGKMQE 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+P + ELS FAPR+ +KI+P +IRDVIGKGG+TIR +TEETGT IDI D+G ITIA+
Sbjct: 540 AIPAARTELSDFAPRMYQMKINPERIRDVIGKGGATIRAITEETGTTIDIQDDGSITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ + + A++RI LT V+IGK+Y G VL++ +FGAI+++L G+DGLLH+SQI+ +RV
Sbjct: 600 VDAEAARRAQQRIADLTAEVEIGKIYNGTVLKILEFGAIVQVLPGRDGLLHVSQIAQERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + D++KE Q VRVKV+ DD+GR++LSM
Sbjct: 660 NKVEDYVKEGQSVRVKVIEADDKGRLRLSM 689
>gi|374365461|ref|ZP_09623551.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus basilensis
OR16]
gi|373103034|gb|EHP44065.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus basilensis
OR16]
Length = 730
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/690 (59%), Positives = 544/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G +K+ +E GEIARQA +V+V IEDTV+LATVV+ K P + +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHKVRLETGEIARQAGGAVIVDIEDTVVLATVVAAKSPKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S +PF GP+G A+VGY DG+Y+LNPT Q+ S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFSGPVGAARVGYKDGQYLLNPTRSQIAASELDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A+++GHE+M+ AINAI++LV++ G+ + +W K++
Sbjct: 183 GTERAVLMVESEARQLSEEVMLGAVVYGHEQMQTAINAIHDLVRDGGKPEWDWTAAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ I+ ++ YQ++ K R K + + + L + + D ++ +L+D
Sbjct: 243 ALIAKVGEIALPLLQDVYQLRQKSARSQKLKEVYATVAAKLAEA-GVEADKVEVGNVLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R Q+L RID R +RPI IR+ +LPR HGS++FTRG+TQALVVATLGT
Sbjct: 302 IEAKIVRSQVLSGEPRIDGRDTRTVRPIEIRSSVLPRAHGSAIFTRGETQALVVATLGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 362 GDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVPI HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPIKAHVAGVAMGLILEGNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQD 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS+ APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSEHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q VRVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQHVRVKLIQADEKGRLRLSL 691
>gi|393758488|ref|ZP_10347309.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
gi|393164907|gb|EJC64959.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
Length = 712
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/694 (58%), Positives = 543/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +VLVSIEDTV+LATVV + +FFPLT
Sbjct: 1 MFNKVTKSFQYGEHTVVLETGEIARQASGAVLVSIEDTVVLATVVGASKAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FFKREG+ SERE +ISRLIDRP+RPLFPEG+ NE+Q++++ +SV
Sbjct: 61 VDYVEKTYSAGKIPGGFFKREGRQSEREILISRLIDRPLRPLFPEGFYNEVQVIIHTVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL+IS +PF GP+G A+VGYIDG+Y+LNP+ QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPVGAARVGYIDGQYVLNPSATQLKSSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+KQL E+++L ++F HE+M+ AIN I+ELV+ G+ + +W P ++
Sbjct: 181 GTEQAVLMVESEAKQLSEEVMLGGVVFAHEQMQAAINCIHELVEEAGKPEWDWQPAAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRD----LTFKNISKDIYSSLIDNENLTIDINDINC 359
+L++ + +E +++AYQ + KQ R + + + + + N D+ +
Sbjct: 241 SLLASVSAAAEEGLKQAYQTREKQARTEQLRAVYAHAKETVLAQAEANGQEQPDMVAVEN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+DLESKI+R +IL RID R +RPISIR G+LPR HGS+LFTRG+TQALVV T
Sbjct: 301 MLFDLESKIVRSRILSGESRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVTT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ ID++MGE+ D FM+HYNMPPFATG+ GR G PKRREIGHGRLAKRAL P+L
Sbjct: 361 LGTKQDEQIIDSIMGEYRDRFMMHYNMPPFATGEAGRFGAPKRREIGHGRLAKRALTPLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F YSIR+VSEITESNGSSSMASVCGG L+++DAGVP+ +HVAG+AMGLIK+G K
Sbjct: 421 PAAEDFQYSIRVVSEITESNGSSSMASVCGGSLSMMDAGVPVQDHVAGVAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +A +G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGITKEIMQVALAQAHEGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + + E+S+FAPR++T+KI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMKESIDGSRTEMSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS + +EA+RRI++LT V++G+ Y G V+RL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 TIASADLDKAREAERRIKELTAEVEVGQEYEGPVMRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q V+VK++ D++GR++LS+
Sbjct: 661 NYRIANINDVLKVGQIVKVKIIEADEKGRLRLSI 694
>gi|264677193|ref|YP_003277099.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
gi|262207705|gb|ACY31803.1| 3' exoribonuclease [Comamonas testosteroni CNB-2]
Length = 747
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/690 (59%), Positives = 543/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQA+ +VLV+I+DTV+LATVV K + +FFPLT
Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ N++ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTISL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I VS AL++S LPF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIAVSAALAVSGLPFNGPIGAARVGYINGEYVLNPGQTLRKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QLPE+++L A++FGHE+ KIAI+AI++LV+ G+ +W KD+
Sbjct: 183 GTESAVLMVESEALQLPEEVMLGAVVFGHEQGKIAIDAIHDLVREGGKPAWDWTAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ + E K+R AYQ +NKQ+R L + D+ ++L + + + D + +L+D
Sbjct: 243 ALIAKVAELGEAKLRAAYQERNKQVRTLACRTAYADVKAALTE-QGVAFDGVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +RPI IR+ +LPRTHGS+LFTRG+TQALV++TLGT
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD QKIDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL LP
Sbjct: 362 RDAQKIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ K +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+TIR LTEETGTQI+I ++G ITIA+
Sbjct: 542 AMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK RIE++T V+IGKVY G ++++ +FGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 TDGAKAEAAKLRIEQITAEVEIGKVYEGPIVKILEFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+E Q V+VKVL DD+GR+KLSM
Sbjct: 662 EKVTDYLQEGQVVKVKVLETDDKGRVKLSM 691
>gi|390572973|ref|ZP_10253165.1| polynucleotide phosphorylase/polyadenylase [Burkholderia terrae
BS001]
gi|389935091|gb|EIM97027.1| polynucleotide phosphorylase/polyadenylase [Burkholderia terrae
BS001]
Length = 712
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/693 (59%), Positives = 541/693 (78%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNK++K FK+G + +E GEIARQA +VLV IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKVVKEFKWGQQTVRMETGEIARQAGGAVLVDIEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++V+S+
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVMSI 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRSQVKESSLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQAAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 359
LIS++ I+ +++ AYQ ++KQ R K + + + D +
Sbjct: 243 ALISRVNEIAGNELLSAYQTRDKQARSTKLKAVYAATQAKLEEEAAAAGTVAADKASVGN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILS 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + V ELS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTELSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS +S +AK+RIE +T V++G+VY G +L+L DFGAI+ +L GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMADAKKRIENITAEVEVGQVYEGTILKLLDFGAIVNLLPGKDGLLHISEIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++R+ I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16]
gi|122947022|sp|Q0KCT4.1|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16]
Length = 723
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/690 (59%), Positives = 547/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G + + +E GEIARQA +VLV +EDTV+LATVV+ K+P +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHTVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKNPKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+V++V+S+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S +PF GP+G A+VGY DG+Y+LNPT QL S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQLATSDLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A+++GHE+M+IAINAI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHELVREGGKPEWDWAPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ ++ +++AYQ++ K R K ++ ++ ++L + D ++ I++D
Sbjct: 243 PLIAKVTEVALPLLQEAYQLRQKSARSQKLKEVNANVAAALA-AAGVEADKVEVGNIMFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R Q+L RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQVLAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +A++G +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAREGRLHILHKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q+VRVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQQVRVKLIQADEKGRLRLSL 691
>gi|334130028|ref|ZP_08503831.1| Polyribonucleotide nucleotidyltransferase [Methyloversatilis
universalis FAM5]
gi|333445064|gb|EGK73007.1| Polyribonucleotide nucleotidyltransferase [Methyloversatilis
universalis FAM5]
Length = 705
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/690 (59%), Positives = 540/690 (78%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N K F +G+ K+ +E GEIARQ++ +V+V++E+TV+LATVV+ K + +FFPLT
Sbjct: 1 MLNATRKEFMFGAQKVVLETGEIARQSSGAVIVNVEETVVLATVVAQKSAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY EK YAAGRIPG FFKREG+P+E+ET+ SRLIDRPIRPLFPEG+ NE+Q++V VLS+
Sbjct: 61 VDYAEKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVQVLSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DI ++IG S AL+IS +PF GP+G A+VGYIDG+Y++NPT QLK S L+L+VA
Sbjct: 121 NPEVDADIPAMIGASAALAISGIPFSGPIGAARVGYIDGQYVINPTASQLKDSKLNLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ +L E+++L A+++GHE+M+ AINAINELV+ G+ + +W +D+
Sbjct: 181 GTEAAVLMVESEAMELSEEVMLGAVVYGHEQMQAAINAINELVEVAGKPEWDWQAPARDQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L S+I ++E K++ AY+I KQ+R + + ++ ++L + D+N I +D
Sbjct: 241 ALWSRISELAEAKLQDAYRITQKQVRSQSVNALRDEVIAALTADAATAPDVNTIKNYFFD 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ I+R +IL+ RID R +RPI+IR ++PRTHGS+LFTRG+TQALV+ATLGT
Sbjct: 301 LEAGIVRGRILNGEPRIDGRDTRTVRPIAIRNSVMPRTHGSALFTRGETQALVIATLGTG 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+ D FMLHYNMPPFATG+ GR G PKRREIGHGRLAKRALL VLP+
Sbjct: 361 RDEQIIDALGGEYRDRFMLHYNMPPFATGETGRFGAPKRREIGHGRLAKRALLAVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+YS+R+VSEITESNGSSSMASVCGG LAL+DAGVP+ HVAGIAMGLIKDG + +L+
Sbjct: 421 EFSYSMRVVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGIAMGLIKDGNRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+Q+AL +A + +IL M+
Sbjct: 481 DILGDEDHLGDMDFKVAGTDSGITALQMDIKIQGITKEIMQVALAQAHEARKHILGIMQQ 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + +S +APRL+T+KI+P KIRDVIGKGG+ IR LTEETG IDI D+G ITIAS
Sbjct: 541 SMSGAREGVSNYAPRLLTMKINPEKIRDVIGKGGAVIRALTEETGATIDIGDDGTITIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
NS + + AKRRIE +T V++GKVY G VLRL DFGAI+ +L GKDGLLHISQI+++R+
Sbjct: 601 VNSEAAENAKRRIEAITAEVEVGKVYEGTVLRLLDFGAIVSVLPGKDGLLHISQIANERI 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE Q+V+VKVL D++GRI+LSM
Sbjct: 661 ANVADHLKEGQQVKVKVLETDEKGRIRLSM 690
>gi|333913086|ref|YP_004486818.1| polyribonucleotide nucleotidyltransferase [Delftia sp. Cs1-4]
gi|333743286|gb|AEF88463.1| Polyribonucleotide nucleotidyltransferase [Delftia sp. Cs1-4]
Length = 753
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (58%), Positives = 540/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQA+ +VLV+I+DTV+LATVV+ K S +FFPLT
Sbjct: 3 IFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ N++ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S ALS+S +PF GP+G A+VGYI+G+Y+LNP Q K S +DL+VA
Sbjct: 123 NPEVDADIAALIATSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QLPED++L A++FGHE+ +IAI AI+ELV+ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAQQLPEDVMLGAVVFGHEQGRIAIEAIHELVREAGKPVWDWVAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ + + +R AYQI+NKQ R + + + L + + D + +L+D
Sbjct: 243 ELIAKVAALGDEALRTAYQIRNKQSRTQACREAYAAVKAGLT-AQGVEFDGVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++I+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEARIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL LP+
Sbjct: 362 RDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGGSTIR LTEETGTQIDI ++G ITIAS
Sbjct: 542 AMGEAKAEISSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQIDIGEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE++T V+IGK+Y G V ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 SDAAKADEAKRRIEEITAEVEIGKIYEGPVTKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L+E Q ++VKV+ D++GR+KLS+
Sbjct: 662 ERVADYLQEGQIIKVKVMETDEKGRVKLSL 691
>gi|388569739|ref|ZP_10156126.1| polynucleotide phosphorylase/polyadenylase [Hydrogenophaga sp. PBC]
gi|388263029|gb|EIK88632.1| polynucleotide phosphorylase/polyadenylase [Hydrogenophaga sp. PBC]
Length = 743
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (58%), Positives = 534/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQ++ +VL+ ++ TV+LATVV+ + + +FFPLT
Sbjct: 3 MFNKVTKTFQWGQHTVTMETGEIARQSSGAVLLDMDGTVVLATVVAKSEAKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V++ LS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFFNEVQVVIHTLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S ALSIS +PF GP+G A+VGY++G+Y+LNP + K S +DL+VA
Sbjct: 123 NPEVDADIAAMIATSAALSISGIPFNGPIGAARVGYVNGQYVLNPGQTERKGSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ QL E+++L ++FGHE+ IAINAINELV++ G+ + W +D+
Sbjct: 183 GTQAAVLMVESEALQLSEEVMLGGVVFGHEQANIAINAINELVRDAGKPEWQWQAPARDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ + K+R AYQI+NKQ R + + S L + D + +L+D
Sbjct: 243 ALIAKVEELGGDKLRAAYQIRNKQARTQACREAYAAVMSGL-KAAGIEFDSVKVEGLLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +RPI IR G+LPRTHGS+LFTRG+TQALVVATLGT
Sbjct: 302 IEAGIVRGQILAGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTD 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ LP
Sbjct: 362 RDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIKD + +L+
Sbjct: 422 DFPYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKDANRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+ IR LTEETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ EAKRRI ++T V++GKVY G + ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 TDGAKADEAKRRIGEITAEVEVGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLQEGQIVKVKVLETDEKGRVKLSM 691
>gi|124266592|ref|YP_001020596.1| polynucleotide phosphorylase/polyadenylase [Methylibium
petroleiphilum PM1]
gi|187610284|sp|A2SFM2.1|PNP_METPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|124259367|gb|ABM94361.1| putative polyribonucleotide nucleotidyltransferase protein
[Methylibium petroleiphilum PM1]
Length = 751
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/690 (60%), Positives = 536/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNKI K+F++G + +++E GEIARQ+ +V+V ++ TV+LATVV+ K+P +FFPLT
Sbjct: 3 LFNKITKTFQWGQHTVTLETGEIARQSGGAVIVDMDGTVVLATVVAAKNPKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+VV+VLS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+ DIA++IG S AL+IS +PF GP+G A+VGYI+G+Y+LNP QL S LDL+VA
Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPIGAARVGYINGEYVLNPGPTQLADSKLDLIVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QLPEDI+L ++FGHE+ IA+ INELV+ G+ + W P KD+
Sbjct: 183 GTEAAVLMVESEADQLPEDIMLGGVVFGHEQGNIAVRVINELVREAGKPEWQWTPPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
I+K+ + E K+R AYQI++KQ R + ++ ++L E +D + +L+D
Sbjct: 243 DFIAKVNGLGEAKLRAAYQIRSKQDRTQATRAAYAEVLAALA-AEGAAVDKVKVENLLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL RID R +RPI IR+ +LPRTHGS+LFTRG+TQALV+ TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D FM HYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP +
Sbjct: 362 RDTQRIDALAGEFEDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKKD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIKDG + +L+
Sbjct: 422 EFAYAIRVVSEITESNGSSSMASVCGGCLSMMDAGVPLKAHVAGIAMGLIKDGNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+ +IL KM
Sbjct: 482 DILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ K ELS FAPRL +KI+P KIRDVIGKGG+TIR LTEETGTQI+I ++G ITIAS
Sbjct: 542 ALGGAKEELSVFAPRLYVMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A +RIE++T +IGKVY G V ++ DFGA++ IL GKDGLLHISQI+ +RV
Sbjct: 602 TDGDKAQAAMKRIEEITAEAEIGKVYEGPVTKILDFGALVNILPGKDGLLHISQIAHQRV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TDFL E Q V+VKVL D++GRIKLS+
Sbjct: 662 EKVTDFLTEGQIVKVKVLETDEKGRIKLSL 691
>gi|160900616|ref|YP_001566198.1| polynucleotide phosphorylase/polyadenylase [Delftia acidovorans
SPH-1]
gi|226702646|sp|A9BNB8.1|PNP_DELAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160366200|gb|ABX37813.1| Polyribonucleotide nucleotidyltransferase [Delftia acidovorans
SPH-1]
Length = 753
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/690 (58%), Positives = 541/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQA+ +VLV+I+DTV+LATVV+ K S +FFPLT
Sbjct: 3 IFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ N++ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S ALS+S +PF GP+G A+VG+I+G+Y+LNP Q K S +DL+VA
Sbjct: 123 NPEVDADIAALIATSAALSVSGIPFNGPIGAARVGFINGEYVLNPGQTQRKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QLPED++L A++FGHE+ +IAI+AI+ELV+ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAQQLPEDVMLGAVVFGHEQGRIAIDAIHELVREAGKPVWDWVAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ + + +R AYQI+NKQ R + + + L + + D + +L+D
Sbjct: 243 ELIAKVAALGDEALRTAYQIRNKQSRTQACREAYAAVKAGLT-AQGVEFDGVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++I+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEARIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL LP+
Sbjct: 362 RDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGGSTIR LTEETGTQIDI ++G ITIAS
Sbjct: 542 AMGEAKAEISSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQIDIGEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE++T V+IGK+Y G V ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 SDAAKADEAKRRIEEITAEVEIGKIYEGPVTKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L+E Q ++VKV+ D++GR+KLS+
Sbjct: 662 ERVADYLQEGQIIKVKVMETDEKGRVKLSL 691
>gi|319778373|ref|YP_004129286.1| polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
MCE9]
gi|397662155|ref|YP_006502855.1| polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
ATCC 35865]
gi|317108397|gb|ADU91143.1| Polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
MCE9]
gi|394350334|gb|AFN36248.1| polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
ATCC 35865]
gi|399114703|emb|CCG17498.1| polyribonucleotide nucleotidyltransferase [Taylorella equigenitalis
14/56]
Length = 733
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/693 (60%), Positives = 551/693 (79%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK SFKYG + ++IE GEIARQA+ +V+V++ TV+LATVV+ K+ + +FFPLT
Sbjct: 1 MFNKFSTSFKYGDHDVTIETGEIARQASGAVVVTMGGTVVLATVVAAKEAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK+YAAGRIPG +FKREGKP+E+ET+ SRLIDRP+RPLFPEG+ NE+Q++++VLSV
Sbjct: 61 VDYVEKSYAAGRIPGGYFKREGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+IDPDIAS+IG S ALSIS +PF GP+G A+VGYI+G+Y+LNP+ Q+K S +DL+VA
Sbjct: 121 DPEIDPDIASMIGSSAALSISGVPFDGPIGAARVGYINGQYVLNPSESQIKDSDMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+KQL E+I+L ++FGHE++++AINAI++LV+ G+ + +W P K++
Sbjct: 181 GTEQAVLMVESEAKQLSEEIMLGGVVFGHEQLQLAINAIHDLVKQAGKPEWDWTPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN-ENLTIDIND---INC 359
LIS++ + + +A+ I+ KQ+R K +S + SL E D D I+
Sbjct: 241 DLISQVREYALAGLTEAFGIREKQLRSTKLKEVSTQVKESLAKKAEESGTDAPDEVEIDN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I++DLES I+R QIL+ RID R +RPISIR G+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 IIFDLESSIVRGQILNGEPRIDGRDTRSVRPISIRLGVLPRTHGSALFTRGETQALVIAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ +D++MGE + FMLHYNMPPFATG++GR G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKQDEQIVDSVMGEVREHFMLHYNMPPFATGEVGRFGSPKRREIGHGRLAKRALIATL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
PN + F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLIK+G K
Sbjct: 421 PNQDDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVEDHVAGVAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT GITALQMDIKI GI +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGINKEIMQVALAQAKEGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + +NELS FAPR+I++ I+P K+RDVIGKGG+TIRTLTEETG QI+I D+G I
Sbjct: 541 KMKEAISGSRNELSSFAPRMISLNINPEKVRDVIGKGGATIRTLTEETGCQIEITDDGHI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS + + QEA+RRIE+LT V+IGKVY G V++L DFG +++IL GKDGLLHIS+I+
Sbjct: 601 TIASSDLEAAQEAQRRIEELTAEVEIGKVYEGTVIKLLDFGGVLQILPGKDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ R+ I D L QKV VKV+ DDRGRI+LS
Sbjct: 661 NFRIKDINDVLSIGQKVNVKVIESDDRGRIRLS 693
>gi|339325133|ref|YP_004684826.1| polyribonucleotide nucleotidyltransferase [Cupriavidus necator N-1]
gi|338165290|gb|AEI76345.1| polyribonucleotide nucleotidyltransferase Pnp [Cupriavidus necator
N-1]
Length = 723
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/690 (59%), Positives = 544/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G + + +E GEIARQA +VLV +EDTV+LATVV+ K P +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHTVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKSPKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+V++V+S+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S +PF GP+G A+VGY DG+Y+LNPT QL S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQLATSDLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL E+++L A+++GHE+M+IAINAI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEANQLSEEVMLGAVVYGHEQMQIAINAIHELVREGGKPEWDWAPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI K+ ++ +++AYQ++ K R K ++ ++ ++L + D ++ I++D
Sbjct: 243 PLIGKVTEVALPLLQEAYQLRQKSARSQKLKEVNANVAAALA-AAGVEADKVEVGNIMFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R Q+L RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQVLAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +A++G +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAREGRLHILHKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q VRVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQHVRVKLIQADEKGRLRLSL 691
>gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
Length = 769
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/690 (60%), Positives = 546/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++GS+++++E GEIARQ+T +V+VS++DTV+LATVV+ D + +FFPLT
Sbjct: 3 MFNKVTKSFQWGSHQVTMETGEIARQSTGAVVVSVDDTVVLATVVAKSDAKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++I S ALSIS +PF GP+G A+VGY++G+Y+LNP+ QL S +DL+VA
Sbjct: 123 NPEVQADIPAMIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ L E+++L A++FGH++ KIAI AINELV+ G+ +W P KD+
Sbjct: 183 GTEAAVLMVESEATGLSEEVMLGAVVFGHDQGKIAIAAINELVREAGKPAWDWQPPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
I+K+ ++E +R AYQI++KQ R + + + ++L E + D ++ +L++
Sbjct: 243 AFIAKVTALAEEPLRAAYQIRSKQARTQATRAVGASVQAAL-KEEGVAFDPVAVDNLLFE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++I+R QIL RID R +RPI IR+ +LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 302 IEARIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLPN +
Sbjct: 362 RDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPNKD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+LLDAGVP+ HVAGIAMGLIK+G + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM
Sbjct: 482 DILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V K E+S+FAPRL T+KI+P KIRDVIGKGG+TIR LT+ETG IDI ++G ITIAS
Sbjct: 542 AVGGAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTDETGCTIDIGEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ A++RIE++T +IGKVY G + ++ DFGA++ IL GKDGLLHISQI+ +RV
Sbjct: 602 TDADKAAFAQKRIEEITAEAEIGKVYEGPITKILDFGALVNILPGKDGLLHISQIAHQRV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TDFL+E Q ++VKVL D++GRIKLSM
Sbjct: 662 EKVTDFLEEGQVIKVKVLETDEKGRIKLSM 691
>gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax
ferrireducens T118]
gi|122479529|sp|Q21YD1.1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118]
Length = 706
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/690 (59%), Positives = 541/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G +++E GEIARQA+ +VL+ ++ TV+LATVV+ + + +FFPLT
Sbjct: 3 IFNKVTKTFQWGQNTVTMETGEIARQASGAVLLDMDGTVVLATVVAKTEGKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+ +VV+ LS+
Sbjct: 63 VDYLEKTYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I VS ALS+S +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAALIAVSAALSVSGIPFSGPIGAARVGYINGEYVLNPGQTARKDSVMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGHE+ IAINAI+ELV++ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDAGKPVWDWKAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ ++ HK+ AYQI+NKQ R + + + L + + D + +L+D
Sbjct: 243 PLIAKVGALAAHKLEAAYQIRNKQARTRACREAYAVVMADL-KLDGVAFDSVAVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL G++ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 362 RDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALMAVLPSKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAPRL T+KI+P KIRDVIGKGGS IR LTEETGTQI+I+++G ITIAS
Sbjct: 542 AMAEAKTEVSTFAPRLFTMKINPDKIRDVIGKGGSVIRALTEETGTQINIDEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ +EAKRRI+++T V+IGK+Y G + ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 ADPAKAEEAKRRIQQITAEVEIGKIYEGPITKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKV+ D++GRIKLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVMETDEKGRIKLSM 691
>gi|393776293|ref|ZP_10364589.1| polynucleotide phosphorylase polyadenylase [Ralstonia sp. PBA]
gi|392716682|gb|EIZ04260.1| polynucleotide phosphorylase polyadenylase [Ralstonia sp. PBA]
Length = 735
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 540/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F KI+K F++G + + +E GEIARQA+ +VLV++++TV+LATVV K +FFPLT
Sbjct: 1 MFQKIVKEFQWGGHTVRMETGEIARQASGAVLVNVDETVVLATVVGAKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++V+S+
Sbjct: 61 VDYLEKTYAAGKIPGGFFKREGRPSEFETLTSRLIDRPLRPLFPEGFYNEVQVVIHVVSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP + DI ++IG S AL++S LPF GP+G A+VGY DG+Y+LNPT Q S LDL+VA
Sbjct: 121 NPDVPADIPALIGASAALAVSGLPFNGPVGAARVGYKDGQYLLNPTRTQQATSELDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGHE+M+ AINAI++LV+ G+ + +W P K++
Sbjct: 181 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQMQTAINAIHDLVREGGKPEWDWAPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ ++E ++R+AYQI+ KQ R K ++ + L + ++ D+ +++D
Sbjct: 241 ALLAKVAEVAEPQLREAYQIREKQARSQKLKLVAPAVMEKLAEAGIEATEV-DVGNMIFD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R QIL RID R +RPI IR G+LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LEAKIVRGQILSGEPRIDGRDTRTVRPIEIRNGVLPRAHGSALFTRGETQALVVATLGTG 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL PVLP
Sbjct: 360 RDEQIIDALSGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAPVLPTPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAG+AMGLI DG K +L+
Sbjct: 420 EFAYTVRVVSEITESNGSSSMASVCGGCLSMIDAGVPLKAHVAGVAMGLILDGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM
Sbjct: 480 DILGDEDHLGDMDFKVAGTADGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMAA 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + LS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 540 AMEGVEVGLSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTSIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ +EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 600 TSAEGMEEAKRRIEGITAEAEVGKIYGGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q+VRVK++ D++GR++LS+
Sbjct: 660 KDIKDWLKEGQQVRVKLIQADEKGRLRLSI 689
>gi|421746948|ref|ZP_16184705.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus necator
HPC(L)]
gi|409774480|gb|EKN56095.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus necator
HPC(L)]
Length = 723
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/690 (59%), Positives = 541/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G + + +E GEIARQA +VLV +EDTV+LATVV+ K P +FFPLT
Sbjct: 3 MFNKVVKQFQWGQHTVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKQPKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+VV+V+S+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S +PF GP+G A+VGY +G+Y+LNPT QL S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYQNGQYLLNPTRSQLASSELDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL E+++L A+++GHE+M++AINAI+ELV+ G+ + NW P K++
Sbjct: 183 GTERAVLMVESEANQLSEEVMLGAVVYGHEQMQVAINAIHELVREGGKPEWNWAPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ + +++AYQI+ K R K + + L + + D ++ IL+D
Sbjct: 243 ALIAKVAEVGSPLLQEAYQIRQKSARSQKVKEAYAAVEARLAEA-GVEFDKVEVGNILFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R Q+L RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQVLAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPAEE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS+ APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSEHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q+VRVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQQVRVKLIQADEKGRLRLSL 691
>gi|386333034|ref|YP_006029203.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
Po82]
gi|334195482|gb|AEG68667.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
Po82]
Length = 724
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/690 (59%), Positives = 549/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G++K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+P +FFPLT
Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+VV+VLS+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A+++GHE+M+IAINAI++LV+ G+ + +W K++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ + ++ AYQ++ K R K + + + L + + D +++ IL++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAE-AGVEADGVEVDNILFE 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 360 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM++
Sbjct: 480 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQS 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 540 AMGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 600 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 660 NQVSDYVKEGQLVRVKLLSTDEKGRMRLSI 689
>gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
UW551]
gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
UW551]
Length = 720
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/690 (59%), Positives = 549/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G++K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+P +FFPLT
Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+VV+VLS+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A+++GHE+M+IAINAI++LV+ G+ + +W K++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ + ++ AYQ++ K R K + + + L + + D +++ IL++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAE-AGVEADGVEVDNILFE 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 360 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM++
Sbjct: 480 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQS 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 540 AMGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 600 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 660 NQVSDYVKEGQLVRVKLLSTDEKGRMRLSI 689
>gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CFBP2957]
gi|421891456|ref|ZP_16322257.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
K60-1]
gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CFBP2957]
gi|378963205|emb|CCF99005.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
K60-1]
Length = 720
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/690 (59%), Positives = 549/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G++K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+P +FFPLT
Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+VV+VLS+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A+++GHE+M+IAINAI++LV+ G+ + +W K++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ + ++ AYQ++ K R K + + + L + + D +++ IL++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAE-AGVDADGVEVDNILFE 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 360 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM++
Sbjct: 480 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQS 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 540 AMGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 600 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 660 NQVSDYVKEGQLVRVKLLSTDEKGRMRLSI 689
>gi|344171819|emb|CCA84441.1| polyribonucleotide nucleotidyltransferase [Ralstonia syzygii R24]
Length = 722
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/690 (60%), Positives = 544/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G++K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+ +FFPLT
Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+VV+VLS+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A+++GHE+M+IAINAI++LV+ G+ + +W K++
Sbjct: 181 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +K+ + ++ AYQ++ K R K + K + L + D +++ IL++
Sbjct: 241 ALFAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAEKLA-AAGVEADGVEVDNILFE 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QILD RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LESKIVRGQILDGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP +
Sbjct: 360 SDEQIIDALSGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKED 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI DG K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILDGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM++
Sbjct: 480 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQS 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 540 AMGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 600 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 660 NQVSDYVKEGQLVRVKLLSTDEKGRMRLSI 689
>gi|260223146|emb|CBA33418.1| Polyribonucleotide nucleotidyltransferase [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 722
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 539/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +++E GEIARQ+T +VL+ ++ TV+LATVV + +FFPLT
Sbjct: 24 IFNKVTKTFQWGQHTVTMETGEIARQSTGAVLLDMDGTVVLATVVGKTEGKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK+YAAG+IPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+ +VV+ +S+
Sbjct: 84 VDYLEKSYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTVSL 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I VS ALS+S +PF GP+G A+VGY++G+Y+LNP K S +DL+VA
Sbjct: 144 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKDSIMDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+++L A+++GHE+ K AINAI+ELV++ G+ +W +D+
Sbjct: 204 GTEAAVLMVESEAQQLSEEVMLGAVVYGHEQSKTAINAIHELVRDAGKPVWDWKAPARDE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ + K+ AYQI+NKQ R + D+++ L + + D + +L+D
Sbjct: 264 ALIAKVDAHGKDKLVAAYQIRNKQARTQACRAAYADVFAGL-KADGVEFDSVKVEGMLFD 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL RID R +R I IR G+LPRTHGSSLFTRG+TQALV+ATLGT
Sbjct: 323 IEAKIVRGQILAGEPRIDGRDTRTVRAIEIRNGVLPRTHGSSLFTRGETQALVIATLGTE 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 383 RDAQRIDALSGEYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAVLPTKE 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F YS+R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 443 EFPYSLRVVSEITESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEDNRFAVLT 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL +M+
Sbjct: 503 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARVHILGEMQK 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S FAPRL + KI+P KIRDVIGKGGS IR LTEETGTQI+I ++G ITIAS
Sbjct: 563 SMAEARTEVSNFAPRLFSFKINPEKIRDVIGKGGSVIRALTEETGTQINIEEDGTITIAS 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ +EAKRRIE++T V+IGKVY G + ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 623 SDPAKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHERV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKVL D++GRIKLSM
Sbjct: 683 EKVTDYLSEGQIVKVKVLETDEKGRIKLSM 712
>gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas
naphthalenivorans CJ2]
gi|187610307|sp|A1VM56.1|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2]
Length = 703
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/690 (59%), Positives = 538/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++G +K+++E GE+ARQA +VL+ ++ TV+LATVV+ D +FFPLT
Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAGRIPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+++ DI ++I S ALSIS +PF GP+G A+V YI+G+Y+LNP QL+ S +DL+VA
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYINGEYVLNPGKTQLQNSTMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+KQL E+I+L AI+FGHE+ IAINAI+ELV++ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDAGKPVWDWKAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K++ ++E K+ AYQI+NKQ R + ++ L E + D + +L+D
Sbjct: 243 VLIAKVVALAEEKLVAAYQIRNKQARTHATRQVTTWTKMGL-KAEGVEFDGVAVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEAKIVRSQILAGDPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL G++ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 362 RDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPSKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S FAPRL +KI+P KIRDVIGKGG+ IR LTEETGTQI+I ++G ITIAS
Sbjct: 542 AMGQANAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRI ++T V+IGKVY G + ++ DFGA++ ++ GKDGLLHISQI+ +RV
Sbjct: 602 NDSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLMPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q ++VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIIKVKVLETDEKGRVKLSM 691
>gi|407938227|ref|YP_006853868.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. KKS102]
gi|407896021|gb|AFU45230.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. KKS102]
Length = 747
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (58%), Positives = 535/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +E GEIARQA+ +VLV+I+DTV+LATVV+ K +FFPLT
Sbjct: 3 IFNKVTKTFQWGDKTVIMETGEIARQASGAVLVNIDDTVVLATVVASKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +VV+ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNEVHVVVHTISL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S AL+IS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAALIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGHE+ +AINAI+ELV++ G+ W+ KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNVAINAIHELVRDAGKPVWQWEAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K++ +++ K+R AYQI+NKQ R + + + L + + D + +L+D
Sbjct: 243 ALIAKVVALADDKLRAAYQIRNKQARTQACREAYAAVMAGL-KADGVEFDSVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +RPI IR +LPR HGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRAHGSALFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D FM+HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEYEDRFMMHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIKD + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDANRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTGGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+ IR LTEETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEVSNFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE++T V+IGK+Y G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDAAKADEAKRRIEQITAEVEIGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L E Q V+VKV+ D++GRIKLSM
Sbjct: 662 EKVSDYLTEGQIVKVKVMETDEKGRIKLSM 691
>gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 735
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/694 (59%), Positives = 542/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++KSFKYG + + +E GEIARQA+ +V+ ++DTV+LATVV+ K+ +FFPLT
Sbjct: 14 MFNKVVKSFKYGDHNVRLETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLT 73
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG+ NE+QI+++VLSV
Sbjct: 74 VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSV 133
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++DPDI S+I S AL++S +PF GP+ A+VGYI+ +Y+L P Q+K S LDL+VA
Sbjct: 134 NPEVDPDIPSMIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVA 193
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL E+++L A++FGHEKM++ I AI+ELV+ G+ +W P +++
Sbjct: 194 GTERAVLMVESEADQLSEEVMLGAVMFGHEKMQVVIEAIDELVEEAGKPLWDWAPAERNQ 253
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIY----SSLIDNENLTIDINDINC 359
L++ I I ++I +AY+ ++KQ R+ + I D+ +++ E I N++
Sbjct: 254 QLVALINQIVGNRIHEAYEHRSKQDRNECLRAIYDDVNEKVNAAVEVGELAEIGENEVAN 313
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+++E+ +R +IL RID R +RPI IRTG+LPR HGS+LFTRG+TQALVV T
Sbjct: 314 ILFEMEAAHVRGKILSGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTT 373
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ +D L GE + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL VL
Sbjct: 374 LGTKQDEQIVDGLTGEQRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALTAVL 433
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
PN F Y++R+VSEI ESNGSSSMASVCGGCL+LLDAGVP+ + VAG+AMGLIK+G K
Sbjct: 434 PNEEDFQYTMRVVSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKF 493
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GI+ +I+Q+AL +AK+G +IL
Sbjct: 494 AVLTDILGDEDHLGDMDFKVAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGRMHILG 553
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM V K ELS +APRL++ KI+P KIRDVIGKGG+ IR LTEETGTQI+I D+G +
Sbjct: 554 KMHEAVEGPKTELSPYAPRLVSFKINPDKIRDVIGKGGAVIRALTEETGTQINIEDDGTV 613
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS + +G EA+RR+E+L +V++GKVY G V RL DFGAI+++L G+DGLLHISQI+
Sbjct: 614 TIASVDEAAGAEARRRVEELAATVEVGKVYEGKVQRLLDFGAIVQVLPGRDGLLHISQIA 673
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RVN ++D+LKE Q VRVKVL IDD+ RI+LSM
Sbjct: 674 HERVNQVSDYLKEGQTVRVKVLEIDDKDRIRLSM 707
>gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666]
gi|123355467|sp|Q127W8.1|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666]
Length = 707
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/690 (59%), Positives = 539/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++G +K+++E GE+ARQA+ +V+V ++ TV+LATVV+ D +FFPLT
Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEVARQASGAVVVDMDGTVVLATVVAKTDAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAGRIPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+++ DI ++I S ALSIS +PF GP+G A+V Y+DG+Y+LNP QLK S +DL+VA
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYVDGQYVLNPGKTQLKDSKMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGHE+ IAINAI+ELV++ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ ++ K++ AYQI++KQ R + D+ ++L + + D + +L+D
Sbjct: 243 PLIAKVNELAGAKLQAAYQIRSKQARTQACRVAYADVMAAL-KADGVAFDGVTVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL RID R +R I IR +LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL G++ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAPRL +KI+P KIRDVIGKGG+ IR LTEETGTQI+I ++G ITIAS
Sbjct: 542 AMGEAKAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRI ++T V+IGKVY G + ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 NDSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVLETDEKGRVKLSM 691
>gi|239816487|ref|YP_002945397.1| polynucleotide phosphorylase/polyadenylase [Variovorax paradoxus
S110]
gi|259534173|sp|C5CT24.1|PNP_VARPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|239803064|gb|ACS20131.1| Polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
S110]
Length = 772
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/690 (59%), Positives = 536/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNK+ KSF++G + +E GEIARQA+ +V+V I+ TVILATVV+ K +FFPLT
Sbjct: 3 LFNKVTKSFQWGDKTVVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+LNE+ +V++ LS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++IGVS ALSIS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L ++FGHE+ IAINAI+ELV++ G+ +W +D+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGGVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAEDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
++K+ +++E K+R YQI++KQ R + + + ++L ++ D +N +L+
Sbjct: 243 AFVAKVKSLAEEKLRAVYQIRSKQARTQALREANASVMNTLKES-GEPFDAGKVNDLLFA 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+ESKI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQ LVV TLGT
Sbjct: 302 IESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S+FAPRL T+KI+P KIRDVIGKGG+ IR L EETGT I+I+++G ITIAS
Sbjct: 542 AMGEAKTEVSQFAPRLTTLKINPEKIRDVIGKGGAVIRGLQEETGTTINIDEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK+RIE++T V+IGKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDPEKAEFAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVLETDEKGRVKLSM 691
>gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 3_1_45B]
gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 3_1_45B]
Length = 707
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/694 (58%), Positives = 537/694 (77%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +SF++G + +++E GEIARQAT +V+ ++DTV+LATVV K+ +FFPLT
Sbjct: 3 MFNKTTQSFRFGDHDVTLETGEIARQATGAVICRMDDTVVLATVVCKKEAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFP+G+ NE+Q++++VLS
Sbjct: 63 VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVIIHVLSA 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P +DPDI +++G S AL++S +PF GP+G +VGYID K+++NPTTEQLK S LDL+VA
Sbjct: 123 DPAVDPDIPAMLGASAALAVSGIPFRGPIGACRVGYIDDKFVVNPTTEQLKTSRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT++A++ VESE+ LPE +L+A++FGH +M++AINAINELV G+ +W P K++
Sbjct: 183 GTQRAVLMVESEADILPEKTMLDAVVFGHREMQVAINAINELVAKAGKPAWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT----IDINDINC 359
LI++I+ I++ + +AY I++KQ R + + + +L + D N++N
Sbjct: 243 ALIARIVEIADKGLHEAYAIRSKQPRTEKLREVYALVEQTLAADAEAAGTEAPDANEVNG 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL++LE+ ++R QIL RID R +RPI IR G+LPRTHGS+LFTRG+TQALV T
Sbjct: 303 ILFELEAHLVRSQILAGEPRIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVTTT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ ID L E D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL VL
Sbjct: 363 LGTKQDEQIIDGLCEEQHDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALKAVL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F Y++R+VSEI ESNGSSSMASVCGGCL++LDAGVP+ ++VAG+AMGLIK+G +
Sbjct: 423 PSPEEFQYTLRVVSEICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNRF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q AL +A G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIEGITPEIMQAALAQAHDGRQHILS 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
+M ELS FAPR+I+ KI+P KIRDVIGKGGS IR LTEETGT I++ D+G++
Sbjct: 543 RMHEMAGGGAKELSDFAPRMISFKINPEKIRDVIGKGGSVIRALTEETGTTINVEDDGMV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TI+S + EA+RRIE++T V+ G++Y G V RL DFGAI+++L GKDGLLHISQI+
Sbjct: 603 TISSPDMARVAEARRRIEEITAEVEAGQIYEGTVTRLLDFGAIVQLLPGKDGLLHISQIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN ++D+LKE QKVRVKV+ D++GR++LSM
Sbjct: 663 NERVNAVSDYLKEGQKVRVKVIEADEKGRVRLSM 696
>gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase [Ralstonia eutropha JMP134]
gi|123625489|sp|Q473U7.1|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha
JMP134]
Length = 728
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/690 (59%), Positives = 546/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G + + +E GEIARQA +V+V +EDTV+LATVV+ K P +FFPLT
Sbjct: 3 MFNKVVKQFQWGQHTVRMETGEIARQAGGAVIVDVEDTVVLATVVAAKSPKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+VV+V+S+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++IG S AL++S +PF GP+G A++GY DG+Y+LNPT Q+ S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGIPFNGPVGAARIGYKDGQYLLNPTRSQMATSDLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A+++GHE+M+IAINAI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ ++ +++AYQ++ K R K +S ++ ++L + + D ++ I++D
Sbjct: 243 ALIAKVTEVALPLLQEAYQLRQKSARSQKLKEVSANVTAALAE-AGVDADKVEVGNIMFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R QIL RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQILGGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGAMQG 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTDGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q++RVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQQLRVKLIQADEKGRLRLSL 691
>gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase [Ralstonia solanacearum GMI1000]
gi|81504298|sp|Q8XXP6.1|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein
[Ralstonia solanacearum GMI1000]
Length = 717
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/690 (59%), Positives = 547/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G++K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+ +FFPLT
Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL E+++L A+++GHE+M+IAINAI++LV++ G+ + +W K++
Sbjct: 181 GTERAVLMVESEANQLSEEVMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ + ++ AYQ++ K R K + + + L + + D +++ IL++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEA-GVEADGVEVDNILFE 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP +
Sbjct: 360 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKED 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 480 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQA 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS+ APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 540 AMGHARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 600 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 660 NQVSDYVKEGQMVRVKLLSTDEKGRMRLSI 689
>gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
PSI07]
gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
PSI07]
gi|344169630|emb|CCA81989.1| polyribonucleotide nucleotidyltransferase [blood disease bacterium
R229]
Length = 722
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/690 (60%), Positives = 544/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G++K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+ +FFPLT
Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+VV+VLS+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 121 NPEVPADIPALVASSAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A+++GHE+M+IAINAI++LV+ G+ + +W K++
Sbjct: 181 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +K+ + ++ AYQ++ K R K + K + L + D +++ IL++
Sbjct: 241 ALFAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAEKLA-AAGVEADGVEVDNILFE 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QILD RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LESKIVRGQILDGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP +
Sbjct: 360 SDEQIIDALSGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKED 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM++
Sbjct: 480 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQS 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 540 AMGHARTELSAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 600 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 660 NQVSDYVKEGQLVRVKLLSTDEKGRMRLSI 689
>gi|398803098|ref|ZP_10562208.1| polyribonucleotide nucleotidyltransferase [Polaromonas sp. CF318]
gi|398097306|gb|EJL87616.1| polyribonucleotide nucleotidyltransferase [Polaromonas sp. CF318]
Length = 705
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/690 (59%), Positives = 540/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++G +K+++E GEIARQ++ +V+V ++ TV+LATVV+ D +FFPLT
Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEIARQSSGAVVVDMDGTVVLATVVAKSDAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAGRIPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+++ DI ++I S ALSIS +PF GP+G A+V YIDG+Y+LNP QLK S +DL+VA
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYIDGQYVLNPGKTQLKDSKMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGHE+ IAINAI+ELV++ G+ +W K++
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDAGKPVWDWQAPAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ ++ K++ AYQI+ KQ R + ++ D+ ++L + + D + +L+D
Sbjct: 243 PLIAKVNELAGAKLQAAYQIRAKQARTQACRVVTSDVMAAL-KADGVEFDSVAVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL RID R +R I IR +LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL G++ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAPRL +KI+P KIRDVIGKGG+ IR LTEETGTQI+I ++G ITIAS
Sbjct: 542 AMGEAKAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRI ++T V+IGKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 NDSAKADEAKRRIAEITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVLETDEKGRVKLSM 691
>gi|389872939|ref|YP_006380358.1| polynucleotide phosphorylase/polyadenylase [Advenella kashmirensis
WT001]
gi|388538188|gb|AFK63376.1| polynucleotide phosphorylase/polyadenylase [Advenella kashmirensis
WT001]
Length = 720
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/693 (59%), Positives = 540/693 (77%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + +E GEIARQ++ +V+VS+ D+V+LATVV+ K+ +FFPLT
Sbjct: 1 MFNKVTKSFQYGDQTVVLETGEIARQSSGAVVVSMGDSVVLATVVAAKNAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ NE+Q++++VLSV
Sbjct: 61 VDYVEKTYSAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+PQIDPDIA++IG S AL++S +PF GP+G A+VGYI+G+Y+LNPT +QL S ++L+VA
Sbjct: 121 DPQIDPDIAALIGSSAALAVSGIPFDGPIGAARVGYINGQYLLNPTQDQLVDSEMNLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+KQL E+++L ++FGHE+M+ AINAI++LV G+ + +W P K++
Sbjct: 181 GTENAVLMVESEAKQLSEEVMLGGVVFGHEQMQAAINAIHDLVAEAGKPEWDWQPEAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT----IDINDINC 359
LI+ + +E ++ AY+I+ KQ R + ++ + +L + D I
Sbjct: 241 ALIAAVTAAAESGLKSAYEIRQKQERTTKLREVTAAVKQTLAEQAAQAGQDAPDAVAIEN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I++DLESKI+R QIL RID R +RPISIR G+LPR HGS+LFTRG+TQALV+AT
Sbjct: 301 IIFDLESKIVRGQILAGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVIAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ ID++MGE D FMLHYNMPPFATG+ GR G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKQDEQIIDSVMGEHRDRFMLHYNMPPFATGETGRFGAPKRREIGHGRLAKRALISTL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P + F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLIKDG K
Sbjct: 421 PAHEDFQYTIRVVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKDGGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +A+ G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTKNGITALQMDIKIQGITKEIMQVALAQARDGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM + + ELS FAPR++++KI+P KIRDVIGKGG+TIR LTEETG IDI+DEG++
Sbjct: 541 KMTEALTGSREELSTFAPRMLSMKINPEKIRDVIGKGGATIRALTEETGCHIDISDEGVV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TI+S + +EA+RRI +LT V++G+VY G V RL DFG I++IL G+DGLLHIS+I+
Sbjct: 601 TISSADLDKAKEAERRIAELTAVVEVGQVYEGTVQRLLDFGGIVQILPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ R+ I D L QKV+VKV+ DDRGR++LS
Sbjct: 661 NYRIANINDVLTVGQKVKVKVIEADDRGRLRLS 693
>gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis
JLW8]
gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8]
Length = 709
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/690 (58%), Positives = 530/690 (76%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK KS +YG++ +++E GEI+RQA ++V+VS DTV+L V S ++ + +FFPLT
Sbjct: 1 MFNKFTKSIQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKREVKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRP+RPLFPE + NE+Q+V VLS
Sbjct: 61 VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSS 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +IIG S A+S+S +P+ GPLG A+VGYI+ +Y+LNPT QL+++ LDL+VA
Sbjct: 121 DPEIDADIPAIIGASAAMSLSGIPYYGPLGAARVGYINDEYVLNPTKAQLEETELDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
TE A++ VESE+K+L E+++L A+++GHE+M+ I I+EL G+ +W D
Sbjct: 181 ATESAVMMVESEAKELSEEVMLGAVVYGHEQMQAVIKMISELAAEAGKDAWDWVAPEPDT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI K+ +++ I A+QIK K R + I+ + + LI E T + N I +++
Sbjct: 241 ALIEKVASLAAADINAAFQIKAKGARSAKLEEITSRVLAELITEETSTTEANKIKNEIFN 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+K +R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQALVVATLGT
Sbjct: 301 LEAKTVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTG 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+ D FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRAL+ LP
Sbjct: 361 RDEQIIDALQGEYADRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAALPAKE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G +V +L+
Sbjct: 421 DFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNRVAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIKI GIT I+Q+AL +AK+G ++IL MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEDGITALQMDIKITGITAQIMQVALAQAKEGRAHILGIMKQ 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V E+S+FAPR+IT+KI+P KIRDVIGKGG+ IR LTEETGT IDI D+G + IA
Sbjct: 541 AVSGANTEMSQFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEDDGTVKIAC 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S G EA+RRI ++T V++G+ Y G V++L DFGAI+ ++ GKDGLLHISQI+ +RV
Sbjct: 601 TSSEQGAEAQRRIAEITAEVEVGQTYEGTVIKLLDFGAIVTLIPGKDGLLHISQIAHQRV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + DFLKE V+VKV+ D++GR++LSM
Sbjct: 661 NAVADFLKEGDVVKVKVVEADEKGRVRLSM 690
>gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera versatilis
301]
gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera versatilis
301]
Length = 709
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/690 (58%), Positives = 526/690 (76%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KS +YG++ +++E GEI+RQA ++V+VS DTV+L V S + + +FFPLT
Sbjct: 1 MFNKVTKSIQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKSEVKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRP+RPLFPE + NE+Q+V VLS
Sbjct: 61 VDYMEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSS 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +IIG S A+S+S +PF GPLG A+VGYI+ +Y+LNPT QL+++ LDL+VA
Sbjct: 121 DPEIDADIPAIIGASAAMSLSGIPFFGPLGAARVGYINDEYVLNPTKAQLEETELDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
TE A++ VESE+K+L E+++L A++FGHE+M+ I I EL G+ +W D
Sbjct: 181 ATETAVMMVESEAKELSEEVMLGAVVFGHEQMQAVIKMIAELAAEAGKDAWDWVAPEPDT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ ++ I A+QIK K R I+ + LI E T + N I L++
Sbjct: 241 ALIAKVAELAAADINAAFQIKAKGARSAKLSEITSRVLGELITEETSTAEANKIKGELFN 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+K +R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQALVVATLGT
Sbjct: 301 LEAKTVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTG 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GEF D FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKR+L+ LP+
Sbjct: 361 RDEQVIDALQGEFKDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRSLIAALPDQA 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCLAL+DAGVP+ VAGIAMGLIK+G +V +L+
Sbjct: 421 DFDYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNRVAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIKI GIT I+Q+AL +AK+G ++IL MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTEDGITALQMDIKITGITSQIMQVALAQAKEGRAHILGIMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ E+S FAPR+I +KI+P KIRDVIGKGG+ IR LTEETGT IDI ++G + IA
Sbjct: 541 AMSSANTEMSAFAPRIIVMKINPEKIRDVIGKGGAVIRALTEETGTSIDITEDGTVKIAC 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S G EA+RRI ++T V+IG VY G VL+L DFGAI+ ++ GKDGLLHISQI+ +RV
Sbjct: 601 TSSEQGAEAQRRIAEITAEVEIGNVYEGTVLKLLDFGAIVSLIPGKDGLLHISQIAHQRV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++DFLKE V+VKV+ D++GR++LSM
Sbjct: 661 NAVSDFLKEGDIVKVKVVEADEKGRVRLSM 690
>gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
LMG 19424]
gi|226702643|sp|B3R3W3.1|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
LMG 19424]
Length = 723
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/690 (59%), Positives = 545/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA +VLV +EDTV+LATVV+ K P +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKSPKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+VV+V+S+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++IG S AL++S +PF GP+G A+VGY DG+Y+LNPT Q+ S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQIATSDLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A+++GHE+M+ AINAI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQTAINAIHELVREGGKPEWDWAPAAKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ ++ +++AYQ++ K R K +S ++ ++L + D ++ I++D
Sbjct: 243 PLIAKVTEVALPLLQEAYQLRQKSARSQKLKEVSANVAAALA-EAGVEADKVEVGNIMFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP +
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKED 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSNMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTEGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q+VRVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQQVRVKLIQADEKGRLRLSL 691
>gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CMR15]
Length = 717
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/690 (59%), Positives = 549/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G++K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+ +FFPLT
Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A+++GHE+M+IAINAI+++V++ G+ + +W K++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDMVRDGGKPEWDWQAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ + ++ AYQ++ K R K + + + L + + D +++ IL++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAE-AGVDADGVEVDNILFE 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 360 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 480 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQA 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS+ APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 540 AMGHARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 600 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 660 NQVSDYVKEGQMVRVKLLSTDEKGRMRLSI 689
>gi|326316095|ref|YP_004233767.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372931|gb|ADX45200.1| polyribonucleotide nucleotidyltransferase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 759
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 531/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++G + +E GEIARQA +VLV I+ TVILATV + K +FFPLT
Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQANGAVLVEIDGTVILATVAASKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+LNE+ +VV+ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVVHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++IGVS AL+IS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIGVSAALAISGIPFAGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL EDI+L ++FGHE+ IAINAI+ELV+ G+ +W +D+
Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGGVVFGHEQANIAINAIHELVREAGKPVWDWQAPAEDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
++K+ +++E K+R YQI++KQ R + + + +L D + +L+
Sbjct: 243 AFVAKVKDLAEEKLRAVYQIRSKQARTQALREANASVMEAL-KASGEPFDAGKVGDLLFA 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+ESKI+R QIL RID R +RPI IR+ +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IESKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D FM HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+ IR LTEETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ AK+RIE++T V+IGK+Y G V+++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDAEKADVAKKRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLTEGQVVKVKVLETDEKGRVKLSM 691
>gi|383757408|ref|YP_005436393.1| polyribonucleotide nucleotidyltransferase Pnp [Rubrivivax
gelatinosus IL144]
gi|381378077|dbj|BAL94894.1| polyribonucleotide nucleotidyltransferase Pnp [Rubrivivax
gelatinosus IL144]
Length = 766
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/690 (59%), Positives = 545/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++GS+++++E GEIARQ+T +V+VS++DTV+LATVV+ + + +FFPLT
Sbjct: 3 MFNKVTKSFQWGSHQVTMETGEIARQSTGAVVVSVDDTVVLATVVAKTEAKTGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFYNEVQVVIHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI ++I S ALSIS +PF GP+G A+VGY++G+Y+LNP+ QL S +DL+VA
Sbjct: 123 NPEVQADIPAMIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPSAAQLADSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ +L E+++L A++FGH++ KIAI AINELV+ G+ +W P KD+
Sbjct: 183 GTEAAVLMVESEATELSEEVMLGAVVFGHDQGKIAIAAINELVREAGKPAWDWQPPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
I+K+ ++E +R AYQI++KQ R + + + ++L E + D ++ +L++
Sbjct: 243 PFIAKVNALAEEPLRAAYQIRSKQARTQATRAVGASVQAAL-KEEGVAFDPVAVDNLLFE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++I+R QIL RID R +RPI IR+ +LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 302 IEARIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GEF D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP +
Sbjct: 362 RDAQRIDALAGEFEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPPKD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+LLDAGVP+ HVAGIAMGLIK+G + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM
Sbjct: 482 DILGDEDHLGDMDFKVAGTASGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V K E+S+FAPRL T+KI+P KIRDVIGKGG+TIR LT+ETG IDI ++G ITIAS
Sbjct: 542 AVGGAKAEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTDETGCTIDIGEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ A++RIE++T +IGKVY G + ++ DFGA++ IL GKDGLLHISQI+ +RV
Sbjct: 602 TDADKAAFAQKRIEEITAEAEIGKVYEGPITKILDFGALVNILPGKDGLLHISQIAHQRV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TDFL E Q ++VKVL D++GRIKLSM
Sbjct: 662 EKVTDFLTEGQVIKVKVLETDEKGRIKLSM 691
>gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
Length = 715
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/694 (58%), Positives = 542/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +VLVSI+DTV+LATVV K+ +FFPLT
Sbjct: 1 MFNKVSKSFQYGQHTVVLETGEIARQASGAVLVSIDDTVVLATVVGAKNAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAGRIPG FFKREG+PSE+E + SRLIDRP+RPLFPEG+ NE+Q++++ +SV
Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPEGFYNEVQVILHTVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL+IS +PF GP+G A+VGYIDG+Y+LNPT+ Q++ S ++L+VA
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYVLNPTSSQIQASQMNLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L E+++L ++FGH++M+ AINAI++LV G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAQNLSEEVMLGGVMFGHDQMQAAINAIHDLVAEAGKPEWDWQPAPANE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 359
L + + ++ ++ AY ++ KQ R + + ++ + L ++ D ++
Sbjct: 241 ALAIAVASAAQEGLQAAYLVREKQARTTKLREVYAEVKAKLAEHATAKCEDAPDNVEVEN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+DLE+KI+R QIL+ RID R +RPIS+ G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 MLFDLEAKIVRGQILNGEPRIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQALVVAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ ID++MGE D FMLHYN PPFATG+ GR G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKQDEQIIDSIMGEHRDRFMLHYNFPPFATGETGRFGSPKRREIGHGRLAKRALVSSL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLIKDG K
Sbjct: 421 PEAQDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKDGGKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGTV GITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTVTGITALQMDIKIQGITREIMQVALAQAKEGRLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + + ELS+FAPR++T+KI+P KIRDVIGKGG+TIR LTEETGTQIDI D+G I
Sbjct: 541 KMKEALDGSRTELSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQIDIGDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TI+S + +EA+RRI++LT V++G+ Y G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 TISSADLDKAREAERRIKELTADVEVGQEYEGPVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q VR+KV+ DD+GR++LSM
Sbjct: 661 NYRIANINDVLKVGQTVRIKVIEADDKGRLRLSM 694
>gi|319794672|ref|YP_004156312.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
EPS]
gi|315597135|gb|ADU38201.1| polyribonucleotide nucleotidyltransferase [Variovorax paradoxus
EPS]
Length = 775
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 534/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNK+ KSF++G + +E GE+ARQA +VLV I+ TVILATVV+ K +FFPLT
Sbjct: 3 LFNKVTKSFQWGDKTVVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+LNE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++IGVS ALSIS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++QL E+I+L ++FGHE+ IAINAI++LV++ G+ +W +D+
Sbjct: 183 GTQAAVLMVESEAQQLSEEIMLGGVVFGHEQAGIAINAIHDLVRDAGKPVWDWQAPAEDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
++K+ ++E K+R YQI++KQ R + + + +SL ++ D +N +L+
Sbjct: 243 AFVAKVKGLAEEKLRAVYQIRSKQARTQALREANATVMASLKESGE-PFDAGKVNDLLFS 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+ESKI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALV+ TLGT
Sbjct: 302 IESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTVRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAPRL T+KI+P KIRDVIGKGGS IR L EETGT I+I+++G ITIAS
Sbjct: 542 AMGEAKAEVSSFAPRLTTLKINPEKIRDVIGKGGSVIRGLQEETGTTINIDEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK+RIE++T V+IGKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDPEKAELAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVLETDEKGRVKLSM 691
>gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
metallidurans CH34]
gi|187611276|sp|Q1LPW7.1|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
metallidurans CH34]
Length = 725
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/690 (59%), Positives = 542/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G + + +E GEIARQA+ +V+V +EDTV+LATVV+ K P + +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHTVRMETGEIARQASGAVIVDVEDTVVLATVVAAKSPKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+V++VLS+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVLSI 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++I S AL++S +PF GP+G A+VGY DG+Y+LNPT Q+ S LDL+VA
Sbjct: 123 NPEIPADIPALIASSAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIAASDLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A+++GHE+M+IAINAI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAHQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ I +++AYQ++ K R K I + + L + + D ++ +L+D
Sbjct: 243 ALIAKVSEIGLPLLQQAYQLRQKSARSTKLKEIYATVQAQLAEA-GVEADKVEVGNVLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R QIL RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIK+ GIT +I+Q+AL +A++G +IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAREGRMHILGAMQG 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q+VRVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQQVRVKLIQADEKGRLRLSL 691
>gi|351731264|ref|ZP_08948955.1| polynucleotide phosphorylase/polyadenylase [Acidovorax radicis N35]
Length = 746
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/690 (58%), Positives = 535/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +E GEIARQA+ +VLV+I+DTV+LATVV+ K +FFPLT
Sbjct: 3 IFNKVTKTFQWGDKTVIMETGEIARQASGAVLVNIDDTVVLATVVASKGAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNEVHVVIHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S AL+IS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAALIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGHE+ +AINAI+ELV++ G+ W+ KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNVAINAIHELVRDAGKPVWQWEAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K++ +++ K+R AYQI+NKQ R + + ++L + + D + +L+D
Sbjct: 243 ALIAKVVALADDKLRAAYQIRNKQARTQACREAYAAVMAAL-KADGVEFDAVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +RPI IR +LPR HGSSLFTRG+TQALVV TLGT
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRGSVLPRAHGSSLFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D FM+HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEYEDRFMMHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALIAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIKD + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDANRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTGGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+ IR LTEETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEVSNFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAK+RIE++T V+IGK+Y G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDAAKADEAKKRIEQITAEVEIGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L E Q V+VKV+ D++GR+KLSM
Sbjct: 662 ERVGDYLTEGQIVKVKVMETDEKGRVKLSM 691
>gi|430805942|ref|ZP_19433057.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus sp. HMR-1]
gi|429501770|gb|ELA00097.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus sp. HMR-1]
Length = 723
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/690 (59%), Positives = 542/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI+K F++G + + +E GEIARQA+ +V+V +EDTV+LATVV+ K P + +FFPLT
Sbjct: 1 MFNKIVKEFQWGQHTVRMETGEIARQASGAVIVDVEDTVVLATVVAAKSPKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+V++VLS+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I DI ++I S AL++S +PF GP+G A+VGY DG+Y+LNPT Q+ S LDL+VA
Sbjct: 121 NPEIPADIPALIASSAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIATSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL ED++L A+++GHE+M+IAINAI++LV+ G+ + +W P K++
Sbjct: 181 GTERAVLMVESEAHQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ I +++AYQ++ K R K I + + L + + D ++ +L+D
Sbjct: 241 ALIAKVSEIGLPLLQQAYQLRQKSARSTKLKEIYATVQAQLAEA-GVEADKVEVGNVLFD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R QIL RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LEAKIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 360 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIK+ GIT +I+Q+AL +A++G +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAREGRMHILGAMQG 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 540 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 600 TSTDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q+VRVK++ D++GR++LS+
Sbjct: 660 KDIKDWLKEGQQVRVKLIQADEKGRLRLSL 689
>gi|378823303|ref|ZP_09845961.1| polyribonucleotide nucleotidyltransferase [Sutterella parvirubra
YIT 11816]
gi|378597879|gb|EHY31109.1| polyribonucleotide nucleotidyltransferase [Sutterella parvirubra
YIT 11816]
Length = 707
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/694 (57%), Positives = 543/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G++ +++E GEIARQAT S + ++DTV+LATVV+ K+ +FFPLT
Sbjct: 3 MFNKVSKTFRFGNHDVTLETGEIARQATGSCICRMDDTVVLATVVAKKEAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP+G+ NE+Q++++VLS
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVIIHVLSA 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P +DPDI ++IG S AL+IS +PF GP+G +VGY++ ++LNPTTE+LK S LDL+VA
Sbjct: 123 DPMVDPDIPAMIGASAALAISGIPFKGPIGACRVGYVNDAFVLNPTTEELKTSRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ LPE +L+A++FGH +M++AINAINELV G+ +W P K++
Sbjct: 183 GTERAVLMVESEADVLPEKTMLDAVMFGHREMQVAINAINELVAEAGKPAWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENL---TIDINDINC 359
L ++I+ I++ +++A+ I+ KQ R + + + ++L D E+ D+N+++
Sbjct: 243 ALYARIVEIADAGLKEAFSIRQKQARTEKLREVYALVEATLTADAESAGTEVADMNEVHG 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL++LE+KI+R IL+ RID R +RPI IR +LPRTHGS+LFTRG+TQALV T
Sbjct: 303 ILFELEAKIVRSNILNGEPRIDGRDTRTVRPIEIRQSVLPRTHGSALFTRGETQALVTTT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ ID L E + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL VL
Sbjct: 363 LGTKQDEQIIDGLCEETHERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALKAVL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P ++F Y+IR+VSEI ESNGSSSMASVCGGCL++LDAGVP+ ++VAG+AMGLIK+G K
Sbjct: 423 PTADEFQYTIRVVSEICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q AL +A +G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIEGITAEIMQAALAQAHEGRQHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM +ELS +APR+++ KI+P KIRDVIGKGGSTIR LTEETGT I++ D+G +
Sbjct: 543 KMHEMAGGGAHELSDYAPRMVSFKINPEKIRDVIGKGGSTIRALTEETGTTINVEDDGTV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS + +EA+RRIE +T V+ G++Y G V RL +FGAI+++L GKDGLLHISQI+
Sbjct: 603 TIASPDMARVEEARRRIELITAEVEAGQIYEGTVQRLLEFGAIVQLLPGKDGLLHISQIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN ++D+LKE QKVRVKV+ D++GR++LSM
Sbjct: 663 NERVNQVSDYLKEGQKVRVKVIEADEKGRVRLSM 696
>gi|398812123|ref|ZP_10570899.1| polyribonucleotide nucleotidyltransferase [Variovorax sp. CF313]
gi|398078889|gb|EJL69771.1| polyribonucleotide nucleotidyltransferase [Variovorax sp. CF313]
Length = 766
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/690 (58%), Positives = 534/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNK+ KSF++G + +E GE+ARQA +VLV I+ TVILATVV+ K +FFPLT
Sbjct: 3 LFNKVTKSFQWGDKTVVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+LNE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++IGVS AL+IS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIGVSAALAISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++QL E+++L ++FGHE+ IAINAI++LV++ G+ +W +D+
Sbjct: 183 GTQAAVLMVESEAQQLSEEVMLGGVVFGHEQANIAINAIHDLVRDAGKPVWDWQAPAEDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
++K+ ++E K+R YQI++KQ R + + + ++L ++ D +N +L+
Sbjct: 243 AFVAKVKGLAEEKLRAVYQIRSKQARTQALREANASVMNTLKES-GEPFDTGKVNDLLFA 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+ESKI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALV+ TLGT
Sbjct: 302 IESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTVRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAPRL T+KI+P KIRDVIGKGGS IR L EETGT I+I+++G ITIAS
Sbjct: 542 AMGEAKAEVSSFAPRLTTLKINPEKIRDVIGKGGSVIRGLQEETGTTINIDEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK+RIE++T V+IGKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDPEKAELAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVLETDEKGRVKLSM 691
>gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium 1_1_47]
gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium 1_1_47]
Length = 724
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/694 (59%), Positives = 541/694 (77%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++KSFKYG + + E GEIARQA+ +V+ ++DTV+LATVV+ K+ +FFPLT
Sbjct: 3 MFNKVVKSFKYGDHNVRFETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG+ NE+QI+++VLSV
Sbjct: 63 VDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSV 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++DPDI S+I S AL++S +PF GP+ A+VGYI+ +Y+L P Q+K S LDL+VA
Sbjct: 123 NPEVDPDIPSMIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ QL E+++L A++FG+EKM++ I AI+ELV+ G+ +W P +++
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVMFGYEKMQVVIEAIDELVEEAGKPLWDWAPAERNQ 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIY----SSLIDNENLTIDINDINC 359
L++ I I ++I +AY+ ++KQ R+ + I D+ +++ E I N++
Sbjct: 243 QLVALINQIVGNRIHEAYEHRSKQDRNECLRAIYDDVNEKVNAAVEVGELAEIGENEVAN 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+++E+ +R +IL RID R +RPI IRTG+LPR HGS+LFTRG+TQALVV T
Sbjct: 303 ILFEMEAAHVRGKILSGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVTT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ +D L GE + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL VL
Sbjct: 363 LGTKQDEQIVDGLTGEQRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALTAVL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
PN F Y++R+VSEI ESNGSSSMASVCGGCL+LLDAGVP+ + VAG+AMGLIK+G K
Sbjct: 423 PNEEDFQYTMRVVSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GI+ +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGRMHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM V K ELS +APRL++ KI+P KIRDVIGKGG+ IR LTEETGTQI+I D+G +
Sbjct: 543 KMHEAVEGPKTELSPYAPRLVSFKINPDKIRDVIGKGGAVIRALTEETGTQINIEDDGTV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS + +G EA+RR+E+L +V++GKVY G V RL DFGAI+++L G+DGLLHISQI+
Sbjct: 603 TIASVDEAAGAEARRRVEELAATVEVGKVYEGKVQRLLDFGAIVQVLPGRDGLLHISQIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RVN ++D+LKE Q VRVKVL IDD+ RI+LSM
Sbjct: 663 HERVNQVSDYLKEGQIVRVKVLEIDDKDRIRLSM 696
>gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
2AN]
gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
2AN]
Length = 747
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 534/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI KSF++G + +E GEIARQA +VLV+I+DTV+LATVV+ K + +FFPLT
Sbjct: 3 IFNKITKSFQWGDKTVIMETGEIARQAGGAVLVNIDDTVVLATVVASKTAKAGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ N++ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNDVHVVIHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S AL+IS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGH++ +AINAI+ELV+ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGNVAINAIHELVREAGKPVWDWKAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+LI+K+ ++E K+R AYQI+NKQ R + + + L + D + +L+D
Sbjct: 243 SLIAKVTALAEDKLRAAYQIRNKQARTHACREAYAVVMADL-KEAGVEFDSVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++I+R QIL RID R +RPI IR+ +LPR HGSSLFTRG+TQALVV TLGT
Sbjct: 302 IEARIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D FMLHYNMPPFATG++GR+G KRREIGHGRLAKRAL VLP
Sbjct: 362 RDAQRIDALAGEYEDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARIHILGKMQD 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+ IR LTEETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE++T V+IGKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDAAKADEAKRRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L E Q V+VKV+ D++GR+KLSM
Sbjct: 662 EKVSDYLTEGQIVKVKVMETDEKGRVKLSM 691
>gi|404396492|ref|ZP_10988286.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_2_56FAA]
gi|348613582|gb|EGY63161.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_2_56FAA]
Length = 724
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (58%), Positives = 547/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+P +FFPLT
Sbjct: 3 MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSM 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A+++GHE+M+IAINAI+ELV++ G+ + +W K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ + ++ AYQ++ K R K + K + + L + + D +++ IL++
Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEA-GVEADGVEVDNILFE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRRE+GHGRLAKRAL+PVLP ++
Sbjct: 362 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKDD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGG LAL+DAGVP+ HVAG+AMGLI + K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQA 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS+ APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 542 AMGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 602 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 662 NQVSDYVKEGQAVRVKLLSTDEKGRMRLSI 691
>gi|309781847|ref|ZP_07676580.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
gi|308919488|gb|EFP65152.1| polyribonucleotide nucleotidyltransferase [Ralstonia sp. 5_7_47FAA]
Length = 722
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (58%), Positives = 547/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+P +FFPLT
Sbjct: 1 MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 61 VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSM 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A+++GHE+M+IAINAI+ELV++ G+ + +W K++
Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ + ++ AYQ++ K R K + K + + L + + D +++ IL++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEA-GVEADGVEVDNILFE 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRRE+GHGRLAKRAL+PVLP ++
Sbjct: 360 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKDD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGG LAL+DAGVP+ HVAG+AMGLI + K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 480 DILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQA 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS+ APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 540 AMGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 600 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 660 NQVSDYVKEGQAVRVKLLSTDEKGRMRLSI 689
>gi|241663489|ref|YP_002981849.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
12D]
gi|240865516|gb|ACS63177.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12D]
Length = 724
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (58%), Positives = 546/690 (79%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+P +FFPLT
Sbjct: 3 MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSM 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+++L A+++GHE+M+IAINAI+ELV++ G+ + +W K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ + ++ AYQ++ K R K + K + + L + + D +++ IL++
Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEA-GVEADGVEVDNILFE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRRE+GHGRLAKRAL+PVLP ++
Sbjct: 362 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKDD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGG LAL+DAGVP+ HVAG+AMGLI + K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMRA 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS+ APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 542 AMGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 602 TSSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 662 NQVSDYVKEGQAVRVKLLSTDEKGRMRLSI 691
>gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72]
gi|187470932|sp|A1K7B5.1|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72]
Length = 699
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/686 (59%), Positives = 535/686 (77%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F YG++ +++E GE+ARQA +V+V+++DTV+LATVV+ KD +FFPLTVDY+
Sbjct: 5 IKKTFTYGAHTVTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLTVDYV 64
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FFKREG+P+E+ET+ SRLIDRPIRPLFPEG+ NE+Q++V VLS+NP++
Sbjct: 65 EKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSLNPEV 124
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
D DI ++I S ALSIS +PF GP+G A+VGY DG+Y+LNPT EQLK S L+L+VAGT
Sbjct: 125 DADIPAMIAASAALSISGIPFDGPIGAARVGYADGQYLLNPTVEQLKTSKLNLVVAGTAS 184
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ +L E ++L A++FGHE+M+ AINAINELV+ G+ + NW P + L++
Sbjct: 185 AVLMVESEADELSEQVMLGAVVFGHEQMQAAINAINELVEVAGKPEWNWQPPAANDALVA 244
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
++ ++ + +A++I +KQ R I K ++L D + N+I I + LE+
Sbjct: 245 RVKELALADVEEAFRITSKQARTERLSEIRKRTIAALTDGVDNAPSENEIKDIFFTLEAG 304
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
+R +IL+ RID R +RPI IR G+LPRTHGS+LFTRG+TQALVVATLGT RDEQ
Sbjct: 305 TVRSRILNGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQ 364
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDA+ GE+ + FMLHYN PPF+TG+ GR GV KRREIGHGRLAKRAL+ +LP F+Y
Sbjct: 365 IIDAIAGEYKERFMLHYNFPPFSTGETGRFGVTKRREIGHGRLAKRALVAMLPKGEDFSY 424
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+IR+VSEITESNGSSSMASVCGG LAL+DAGVP+ +HVAGIAMGLIKDG + +L+DILG
Sbjct: 425 TIRVVSEITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLIKDGNRFAVLTDILG 484
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A +G +IL++MK +
Sbjct: 485 DEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQMKDALGV 544
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S+FAPR++ +KI+P KIRDVIGKGG+ IR L EETGT I+I D+G ITI+S ++
Sbjct: 545 ARGEVSEFAPRMLNMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSITISSVSAE 604
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
Q+AK RIE +T V++GKVY G V+RL DFGAI+ IL G+DGLLH+SQI+++RVN +
Sbjct: 605 GAQKAKARIEDITAEVEVGKVYEGTVVRLLDFGAIVNILPGRDGLLHVSQIANERVNNVG 664
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D++KE Q VRVKVL D+RG+I+LSM
Sbjct: 665 DYVKEGQAVRVKVLETDERGKIRLSM 690
>gi|171058181|ref|YP_001790530.1| polynucleotide phosphorylase/polyadenylase [Leptothrix cholodnii
SP-6]
gi|226702660|sp|B1Y823.1|PNP_LEPCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|170775626|gb|ACB33765.1| Polyribonucleotide nucleotidyltransferase [Leptothrix cholodnii
SP-6]
Length = 767
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/690 (59%), Positives = 536/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFNK+ K+F++G + +++E GEI+RQA +V+V+I+DTV+LATVV K+ +FFPLT
Sbjct: 3 LFNKVTKTFQWGQHTVTLETGEISRQAGGAVIVNIDDTVVLATVVGAKNAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE E + SRLIDRP+RPLFPEG+ NE+ +VV+VLS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELEVLTSRLIDRPLRPLFPEGFYNEVHVVVHVLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+ DIA++IG S AL+IS +PF GP+G A+VGY++G+Y+LNP QLK S +DL+VA
Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPVGAARVGYVNGEYVLNPGPTQLKSSKMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L A+++GHE+ K+AI AINELV++ G+ +W P +++
Sbjct: 183 GTEAAVLMVESEADQLTEEVMLGAVVYGHEQAKVAIAAINELVRDAGKPAWDWQPPARNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ KI AYQI+NKQ R + ++ SL + + D D++ +L++
Sbjct: 243 PLIAKVAEFGLAKIEAAYQIRNKQARTHACRAAYAEVKISLAEA-GVVFDNVDVDNLLFE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+K +R QIL RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKTVRGQILQGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTD 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
+D Q+IDAL G+F DSF+ HYNMPPFATG++GR+G KRRE GHGRLAKRAL+P+LP +
Sbjct: 362 QDSQRIDALAGDFRDSFLFHYNMPPFATGEVGRMGTTKRRETGHGRLAKRALVPLLPPKD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCGGCLA++DAGVP+ HVAGIAMGLIK+G + +L+
Sbjct: 422 EFGYTIRVVSEITESNGSSSMASVCGGCLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+ +IL KM
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGVTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ E+S FAPRL T+KI+P KIRDVIGKGGS IR LTEETG QIDI ++G ITIAS
Sbjct: 542 AMGTANTEVSNFAPRLYTMKINPEKIRDVIGKGGSVIRALTEETGCQIDIGEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ + AK+RI +T +IGKVY G V+++ DFGA+I IL GKDGLLHISQI+ +RV
Sbjct: 602 TDADKAELAKKRIADITAEAEIGKVYEGPVVKILDFGALINILPGKDGLLHISQIAHQRV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TDFL E Q V+VKVL D++GRIKLSM
Sbjct: 662 EKVTDFLTEGQVVKVKVLETDEKGRIKLSM 691
>gi|365093679|ref|ZP_09330740.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. NO-1]
gi|363414163|gb|EHL21317.1| polynucleotide phosphorylase/polyadenylase [Acidovorax sp. NO-1]
Length = 751
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/690 (58%), Positives = 534/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++G + +E GEIARQA+ +VLV+I+DTV+LATVV+ K +FFPLT
Sbjct: 3 IFNKVTKSFQWGDKTVIMETGEIARQASGAVLVNIDDTVVLATVVASKGAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNEVHVVIHTISL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S AL+IS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAALIATSAALAISGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGHE+ +AINAI+ELV++ G+ W+ KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNVAINAIHELVRDAGKPVWQWEAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+LI+K+ +++ K+R AYQI+NKQ R + + + L + + D + +L+D
Sbjct: 243 SLIAKVTTLADDKLRAAYQIRNKQARTQACRESYAAVMADL-KADGVEFDSVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +RPI IR+ +LPR HGSSLFTRG+TQALVV TLGT
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D FM+HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEYEDRFMMHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIKD + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDANRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ E+S FAP+L T+KI+P KIRDVIGKGG+ IR LTEETG QI+I ++G ITIA+
Sbjct: 542 AMSTANTEVSSFAPKLFTMKINPEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ + AK+RIE++T V+IGK+Y G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDADKAEIAKKRIEQITAEVEIGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L E Q V+VKV+ D++GR+KLSM
Sbjct: 662 ERVGDYLTEGQIVKVKVMETDEKGRVKLSM 691
>gi|424776542|ref|ZP_18203523.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes sp.
HPC1271]
gi|422888362|gb|EKU30751.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes sp.
HPC1271]
Length = 712
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/694 (58%), Positives = 542/694 (78%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF+YG + + +E GEIARQA+ +VLVSIEDTV+LATVV + + +FFPLT
Sbjct: 1 MFNKVTKSFQYGEHTVVLETGEIARQASGAVLVSIEDTVVLATVVGKSEAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK Y+AG+IPG FFKREG+ SERE +ISRLIDRP+RPLFPEG+ NE+Q++++ +SV
Sbjct: 61 VDYVEKTYSAGKIPGGFFKREGRQSEREILISRLIDRPLRPLFPEGFYNEVQVIIHTVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S AL+IS +PF GP+G A+VGYIDG+Y+LNP+ QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALAISGIPFNGPVGAARVGYIDGQYVLNPSATQLKSSALDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+KQL E+++L ++F HE+M+ AIN I+ELV+ G+ + +W P ++
Sbjct: 181 GTEQAVLMVESEAKQLSEEVMLGGVVFAHEQMQAAINCIHELVEEAGKPEWDWQPAAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT----IDINDINC 359
+L++ + +E + +AYQ + KQ R + + + ++ D+ +
Sbjct: 241 SLLAAVTAAAEEGLTQAYQTREKQARTEQVRAVYAQVKETVKAQAEAAGQDQPDMVAVEN 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+++DLESKI+R +IL RID R +RPISIR G+LPR HGS+LFTRG+TQALVV T
Sbjct: 301 MMFDLESKIVRSRILSGESRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVTT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ ID++MGE+ D FM+HYNMPPFATG+ GR G PKRREIGHGRLAKRAL P+L
Sbjct: 361 LGTKQDEQIIDSIMGEYRDRFMMHYNMPPFATGEAGRFGAPKRREIGHGRLAKRALTPLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F YSIR+VSEITESNGSSSMASVCGG L+++DAGVP+ +HVAG+AMGLIK+G K
Sbjct: 421 PAAEDFQYSIRVVSEITESNGSSSMASVCGGSLSMMDAGVPVQDHVAGVAMGLIKEGNKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +A +G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGITKEIMQVALAQAHEGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + + E+S+FAPR++T+KI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMKESIDGSRTEMSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS + +EA+RRI++LT V++G+ Y G V+RL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 TIASADLDKAREAERRIKELTAEVEVGQEYEGPVMRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ R+ I D LK Q V+VKV+ D++GR++LS+
Sbjct: 661 NYRIANINDVLKVGQVVKVKVIEADEKGRLRLSI 694
>gi|187929298|ref|YP_001899785.1| polynucleotide phosphorylase/polyadenylase [Ralstonia pickettii
12J]
gi|226702680|sp|B2U7R6.1|PNP_RALPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187726188|gb|ACD27353.1| Polyribonucleotide nucleotidyltransferase [Ralstonia pickettii 12J]
Length = 724
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 544/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K F++G +K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+P +FFPLT
Sbjct: 3 MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++QL E+I+L A+++GHE+M+IAINAI++LV++ G+ + +W K++
Sbjct: 183 GTERAVLMVESEAQQLSEEIMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ + ++ AYQ++ K R K + K + + L + + D +++ IL++
Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAAKLAEA-GVEADGVEVDNILFE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QIL+ RID R +RPI IR+ +LPR HGSSLFTRG+TQALVVA LGT
Sbjct: 302 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTK 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRRE+GHGRLAKRAL+PVLP +
Sbjct: 362 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPPAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGG LAL+DAGVPI HVAG+AMGLI + K +L+
Sbjct: 422 EFGYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPIKAHVAGVAMGLILEDNKFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQA 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS+ APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 542 AMGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIGEDGTITIAS 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 602 TSSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 662 NQVSDYVKEGQAVRVKLLSTDEKGRMRLSI 691
>gi|82703668|ref|YP_413234.1| polynucleotide phosphorylase/polyadenylase [Nitrosospira
multiformis ATCC 25196]
gi|123740603|sp|Q2Y5X9.1|PNP_NITMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|82411733|gb|ABB75842.1| 3' exoribonuclease [Nitrosospira multiformis ATCC 25196]
Length = 701
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/687 (58%), Positives = 533/687 (77%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI KS YGS++++ E GEIARQA ++++VS+ DTV+L TVV K +FFPLTVDY
Sbjct: 2 KIKKSVTYGSHQLTFETGEIARQAHAAIMVSMGDTVVLVTVVGAKSAKQGQDFFPLTVDY 61
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
E++YAAGRIPGSFFKREG+PSE+E + SRLIDRPIRPLFPE + NE+Q+V VLS + +
Sbjct: 62 QERSYAAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPENFYNEVQVVATVLSSDNE 121
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI +++G S AL +S +PF GP+G A++GYI+G+Y+LNP T LK++ L+L+VAGT
Sbjct: 122 VDADIPAMLGASAALVLSGIPFNGPIGAARIGYINGEYVLNPDTSALKQTQLNLVVAGTR 181
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
+A++ VES++ +L ED++L AI++GH++M++AI+AINEL G +W+P +D L
Sbjct: 182 QAVLMVESDAMELSEDVMLGAIVYGHQQMQVAIDAINELADEAGVTAWDWEPPARDPALA 241
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
KI ++E+ +R A++ K KQ+R T NI +++ L + D + + LES
Sbjct: 242 VKIAELAENDLRAAFRQKQKQVRSETIDNIWTRVFTELGVEDGEGPDAQAVKEACFALES 301
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
+I+R QILD RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALVVATLGT RDE
Sbjct: 302 RIVRSQILDGEPRIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDE 361
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
QKIDAL G++++ FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRAL+ VLP+ +F
Sbjct: 362 QKIDALQGDYSERFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAVLPSPEEFG 421
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
YS+R+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G + +L+DIL
Sbjct: 422 YSLRVVSEITESNGSSSMASVCGGCLALMDAGVPLKGHVAGIAMGLIKEGNRFAVLTDIL 481
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGT NGITALQMDIKI GIT +I+ AL +A++G +IL M+ +P
Sbjct: 482 GDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEILHAALVQAREGRMHILAIMRQVLP 541
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ ++S+ APR+I I+I+P KIRDVIGKGG+ IR LTEETGT IDI D+G + IA N+
Sbjct: 542 ARREDISEHAPRIIKIRINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGTVMIACVNA 601
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
G+ AK+RIE +T V++G+VY G VL+L DFGAI+ +L GKDGLLHISQI+++RVN +
Sbjct: 602 EGGELAKKRIEDITAEVEVGRVYDGTVLKLLDFGAIVSVLPGKDGLLHISQIANERVNNV 661
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
D LKE Q VRVKVL DD+GR++LSM
Sbjct: 662 GDHLKEGQVVRVKVLEADDKGRLRLSM 688
>gi|253997787|ref|YP_003049850.1| polynucleotide phosphorylase/polyadenylase [Methylovorus
glucosetrophus SIP3-4]
gi|313199851|ref|YP_004038509.1| polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
gi|253984466|gb|ACT49323.1| Polyribonucleotide nucleotidyltransferase [Methylovorus
glucosetrophus SIP3-4]
gi|312439167|gb|ADQ83273.1| Polyribonucleotide nucleotidyltransferase [Methylovorus sp. MP688]
Length = 707
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/689 (60%), Positives = 531/689 (77%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I K+ YG +++++E GEIARQA +V+VS DTV+L TVV D +FFPLTV
Sbjct: 1 MKAIKKTITYGQHELTLETGEIARQADGAVMVSYGDTVVLVTVVGKTDVKPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAG+IPG FFKREG+PSE+ET+ SRLIDRP+RPLFPE + NE+QIV V+S +
Sbjct: 61 DYQERTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQIVATVMSSD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
+ID DI +IIG S AL+IS +PF GP+G A+VGYI+G+Y+LNPT QLK + LDL+VA
Sbjct: 121 SEIDSDIPAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTATQLKDTELDLVVAA 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+K+LPED++L ++++GHE+M+ IN INE+ VG++ +W P ++
Sbjct: 181 TSTAVLMVESEAKELPEDVMLGSVVYGHEQMQAVINLINEIAAEVGKEPWDWTPPAENTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI KI I+ I AYQIK+K R I + S LI T + N+I IL++L
Sbjct: 241 LIEKITGIASADINAAYQIKSKGARSSKLDEIKSRVLSELITEATSTEEANEIKSILHNL 300
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E+K++R QIL+ RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALVVATLGT R
Sbjct: 301 EAKVVRGQILNGEPRIDGRNTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGR 360
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
DEQ IDAL GE+TD FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRALL LP+ +
Sbjct: 361 DEQIIDALQGEYTDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAALPSQEE 420
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y+IR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G +V +L+D
Sbjct: 421 FGYTIRVVSEITESNGSSSMASVCGGCLALMDAGVPVKTHVAGIAMGLIKEGNRVAVLTD 480
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q AL +AK+G +IL MK
Sbjct: 481 ILGDEDHLGDMDFKVAGSEDGITALQMDIKITGITAEIMQAALAQAKEGRLHILGLMKEA 540
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + + ELS FAPR+IT+KI+P KIRDVIGKGG+ IR LTEETGT IDI ++G I I
Sbjct: 541 MGETRQELSAFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEEDGTIKIGCT 600
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ +G+EAKRRIE +T V+IG+ Y G V++L DFGAI+ +L GKDGLLHISQI+ +RVN
Sbjct: 601 SAEAGEEAKRRIEAITAEVEIGQTYEGTVIKLLDFGAIVSLLPGKDGLLHISQIAHQRVN 660
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ DFLKE Q V+VKV+ D++GR++LSM
Sbjct: 661 AVGDFLKEGQVVKVKVMEADEKGRVRLSM 689
>gi|145589238|ref|YP_001155835.1| polynucleotide phosphorylase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|187610308|sp|A4SXQ7.1|PNP_POLSQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145047644|gb|ABP34271.1| 3' exoribonuclease [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 722
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/690 (58%), Positives = 540/690 (78%), Gaps = 2/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K +KSF++G++++++E GEIARQ+ +V+V+++DTV++ TVV+ K +FFPLT
Sbjct: 3 MFKKAVKSFQWGNHQVTMETGEIARQSGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+LNE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVLSI 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP + DI ++I S AL+IS +PF GP+G A+VGY +G+Y+LNPT + S LDL+VA
Sbjct: 123 NPDVPSDIPALIAASAALAISGIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLIVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ QL E+++L A+++GH++M+ AINAINELV G+ + +W KD+
Sbjct: 183 GTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINELVAEAGKPEWDWTAAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
I+K+ ++E +R+AYQI+ K R K I+K++ + L E +D +N IL++
Sbjct: 243 PFIAKVTALAEAPLREAYQIRQKGARSDKLKEITKEVMAKL--QEEGDVDAVAVNDILFE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL+ RID R +RPI IR G+LPRTHGS+LFTRG+TQALVVATLGT+
Sbjct: 301 IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+ D FM HYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP+
Sbjct: 361 RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F YSIR+VSEITESNGSSSMASVCGGCLA++DAGVP+ HVAG+AMGLI DG + +L+
Sbjct: 421 DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 481 DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+++ KI P KIR+VIGKGG+TI+ LT+ETG IDI D+G +TIAS
Sbjct: 541 AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAK RIE +T ++GK+Y G V++L +FGA++ IL GKDGLLHIS+IS++RV
Sbjct: 601 TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L E Q VRVK+L D+RGR++LS+
Sbjct: 661 KEVKDYLAEGQVVRVKLLAADERGRLRLSL 690
>gi|456063076|ref|YP_007502046.1| polynucleotide phosphorylase/polyadenylase [beta proteobacterium
CB]
gi|455440373|gb|AGG33311.1| polynucleotide phosphorylase/polyadenylase [beta proteobacterium
CB]
Length = 721
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/690 (57%), Positives = 541/690 (78%), Gaps = 2/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K +K+F++G++++++E GEIARQA +V+V+++DTV++ TVV+ K +FFPLT
Sbjct: 3 MFKKAVKTFQWGNHQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+LNE+Q+VV+VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVLSI 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP + DI ++I S AL++S +PF GP+G A+VGY +G+Y+LNPT + S +DL+VA
Sbjct: 123 NPDVPADIPALIAASAALAVSGIPFAGPVGAARVGYANGQYLLNPTRTEQATSEMDLIVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ QL E+I+L A+++GH++M+ AINAIN+LV+ G+ + +W KD+
Sbjct: 183 GTQAAVLMVESEANQLSEEIMLGAVVYGHDQMQTAINAINDLVREAGKPEWDWTASPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
I+K+ ++E +R+AYQI+ K R K ISK + + L + + +D ++ I+++
Sbjct: 243 PFIAKVTALAEAPLREAYQIRQKGARSDKLKEISKTVLAKLAEEGD--VDAVAVSDIMFE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL+ RID R +RPI IR G+LPRTHGS+LFTRG+TQALVVATLGT+
Sbjct: 301 IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+ D FM HYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP+
Sbjct: 361 RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F YSIR+VSEITESNGSSSMASVCGGCLA++DAGVP+ HVAG+AMGLI DG + +L+
Sbjct: 421 DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 481 DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+++ KI P KIR+VIGKGG+TI+ LT+ETG IDI D+G +TIAS
Sbjct: 541 AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAK RIE +T ++GK+Y G V++L +FGA++ IL GKDGLLHIS+IS++RV
Sbjct: 601 TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L E Q VRVK+L D+RGR++LS+
Sbjct: 661 KEVKDYLAEGQVVRVKLLAADERGRLRLSL 690
>gi|56478759|ref|YP_160348.1| polynucleotide phosphorylase [Aromatoleum aromaticum EbN1]
gi|81356612|sp|Q5NZR7.1|PNP_AZOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56314802|emb|CAI09447.1| polyribonucleotide nucleotidyltransferase protein [Aromatoleum
aromaticum EbN1]
Length = 699
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/686 (57%), Positives = 539/686 (78%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F YG++ +++E GEIARQA +V+V+++DT++LATVV+ K+ + +FFPLTVDY+
Sbjct: 5 IKKTFAYGAHTVTLETGEIARQAGGAVIVNMDDTIVLATVVAAKEAKAGQDFFPLTVDYV 64
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FFKREG+P+E+ET+ SRLIDRPIRPLFPEG+ NE+Q+++ VLS+NP++
Sbjct: 65 EKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIITVLSLNPEV 124
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI ++IG S AL+IS +PF GP+G +VGY G+Y+LNPT EQLK S L+L+VAGTE
Sbjct: 125 DPDIPAMIGASAALAISGVPFDGPIGACRVGYSGGQYLLNPTVEQLKASELNLVVAGTEA 184
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+++L E+++L A++FGH++M++AI AINELV+ G+ + +W P K++ LI+
Sbjct: 185 AVLMVESEARELSEEVMLGAVVFGHQQMQVAIRAINELVEVAGKPEWDWQPPAKNEPLIA 244
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+I ++ + +A++I +KQ R I K + + D + N++ I +DLE+
Sbjct: 245 RIKELAGAHLEEAFRITSKQARTQRINEIRKQTFGVVADGVEVPPTGNELKDIFHDLEAG 304
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R +RPI IR G+LPRTHGS+LFTRG+TQALV+ATLGT RDEQ
Sbjct: 305 VVRSRILAGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQ 364
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDA+ GE+ +SF+LHYN PPF+TG+ GR+GV KRRE+GHGRLAKRAL+ LP + F+Y
Sbjct: 365 IIDAIAGEYRESFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALIAALPADEDFSY 424
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
++R+VSEITESNGSSSMASVCG LA++DAGVP+ HVAGIAMGLIK+G + +L+DILG
Sbjct: 425 TVRVVSEITESNGSSSMASVCGASLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLTDILG 484
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +A +G +IL MK +
Sbjct: 485 DEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAGEGRIHILALMKQALAS 544
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S+FAPR++T+KI+P KIRDVIGKGG+ IR L EETGT I++ D+G +TI+S ++
Sbjct: 545 HRGEVSEFAPRMLTMKINPEKIRDVIGKGGAVIRGLQEETGTVIELQDDGSVTISSVSAE 604
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
Q AK +IE +T V++GKVY G V+RL DFGAI+ I+ G+DGLLH+SQI+++RVN +
Sbjct: 605 GAQLAKEKIEAITAEVEVGKVYNGTVVRLLDFGAIVNIMPGRDGLLHVSQIANERVNNVA 664
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D++KE Q VRVKVL D+RG+I+LSM
Sbjct: 665 DYVKEGQAVRVKVLETDERGKIRLSM 690
>gi|171463523|ref|YP_001797636.1| polynucleotide phosphorylase/polyadenylase [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|226702675|sp|B1XUJ5.1|PNP_POLNS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|171193061|gb|ACB44022.1| Polyribonucleotide nucleotidyltransferase [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 722
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/690 (58%), Positives = 540/690 (78%), Gaps = 2/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K +KSF++G+Y++++E GEIARQA +V+V+++DTV++ TVV+ K +FFPLT
Sbjct: 3 MFKKAVKSFQWGTYQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+LNE+Q+VV+VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVLSI 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP + DI ++I S AL++S +PF GP+G A+VGY +G+Y+LNPT + S LDL+VA
Sbjct: 123 NPDVPSDIPALIAASAALAVSSIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLIVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ QL E+++L A+++GH++M+ AINAIN+LV G+ + +W KD+
Sbjct: 183 GTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINDLVCEAGKPEWDWTAAPKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
I+K+ ++E +R+AYQI+ K R K ISK++ + L +E +D ++ I+++
Sbjct: 243 PFIAKVTALAEAPLREAYQIRQKGARSDKLKEISKEVMAKL--SEEGDVDAVAVSDIMFE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+KI+R QIL+ RID R +RPI IR G+LPRTHGS+LFTRG+TQALVVATLGT+
Sbjct: 301 IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ ID L GE+ D FM HYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP+
Sbjct: 361 RDEQIIDVLEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F YSIR+VSEITESNGSSSMASVCGGCLA++DAGVP+ HVAG+AMGLI DG + +L+
Sbjct: 421 DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 481 DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS APR+++ KI P KIR+VIGKGG+TI+ LT+ETG IDI D+G +TIAS
Sbjct: 541 AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAK RIE +T ++GK+Y G V++L +FGA++ IL GKDGLLHIS+IS++RV
Sbjct: 601 TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L E Q VRVK+L D+RGR++LS+
Sbjct: 661 KEVKDYLAEGQVVRVKLLAADERGRLRLSL 690
>gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase [Thiobacillus denitrificans ATCC
25259]
gi|123759157|sp|Q3SKX5.1|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus
denitrificans ATCC 25259]
Length = 706
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/689 (58%), Positives = 529/689 (76%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
+ I K+F YG +++++E GEIARQA+ +V+V+++DT++L TVV+ + +FFPLTV
Sbjct: 1 MSAIKKTFTYGRHQVTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY EK YAAGRIPG F KRE +PSE ET+ISRLIDRPIRPLFPEG+ NE+QI+ V+S N
Sbjct: 61 DYQEKTYAAGRIPGGFLKRESRPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++ DI ++IG S ALS+S LPF GP+G A+VG+I+G+Y+LNPT +LK S LDL+VAG
Sbjct: 121 PEVSADIPALIGASAALSLSGLPFDGPVGAARVGFINGEYVLNPTNAELKDSALDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ +LPEDI+L A++FGH +M+ AINAINEL G +W P +D
Sbjct: 181 TESAVLMVESEAMELPEDIMLGAVVFGHTQMQAAINAINELADEAGADAWDWAPPAEDTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
++ ++ ++E +++AY IK K+ R + ++ LI + T+ N + + L
Sbjct: 241 MVDRLKALAEDGLQQAYNIKQKRARMAAVDEVRSKAFAELITADMDTVAANHVKDAFHRL 300
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E+ ++R +IL RID R +RPI+IRTG+LPR HGS+LFTRG+TQALVV TLGT R
Sbjct: 301 EAGVVRNRILSGQPRIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGR 360
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
DEQ IDAL G ++D FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRALL VLP+ +
Sbjct: 361 DEQTIDALEGSYSDRFMLHYNMPPYATGETGRVGSPKRREIGHGRLAKRALLAVLPSKEE 420
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCGGCL+L+DAG P+ HVAGIAMGLIK+G + +L+D
Sbjct: 421 FGYTMRVVSEITESNGSSSMASVCGGCLSLMDAGAPLKAHVAGIAMGLIKEGNRFAVLTD 480
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q AL +AK+G +IL MK
Sbjct: 481 ILGDEDHLGDMDFKVAGTENGVTALQMDIKITGITKEIMQAALTQAKEGRMHILGIMKAS 540
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
V + +E+S +APR+I +KI+P KIRDVIGKGG+ IR LTEETGTQIDI ++G + IA
Sbjct: 541 VSET-HEMSAYAPRIIAMKINPEKIRDVIGKGGAVIRALTEETGTQIDIQEDGSVKIACT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +G+ AK+RIE++T V++GKVY G V++L DFGAI+ +L G+DGLLHISQI+ +RVN
Sbjct: 600 SMEAGELAKKRIEEITAEVEVGKVYEGPVIKLLDFGAIVNVLPGRDGLLHISQIAHERVN 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D+LKE Q VRVK+L D++GR++LSM
Sbjct: 660 TIGDYLKEGQVVRVKILEADEKGRLRLSM 688
>gi|257094905|ref|YP_003168546.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047429|gb|ACV36617.1| Polyribonucleotide nucleotidyltransferase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 706
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/690 (57%), Positives = 540/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K+F YG++++++E GEIARQA +V+VSI+DTV+L +VV K +FFPLT
Sbjct: 1 MFNIVKKTFAYGAHQVTMETGEIARQAGGAVMVSIDDTVVLVSVVGNKTAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE+ET+ SRLIDRP+RPLFP+G+ +E+Q+V V+S+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPDGFYHEVQVVATVMSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+IDPDIA++IG S A++IS +PF GP+G A+VGY+DG+Y++NPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIAALIGASAAMTISGIPFDGPIGAARVGYVDGQYVVNPTATQLKSSLLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+K+L E+++L A++FGH++M++ I+AINEL G+ + +W P +++
Sbjct: 181 GTQAAVLMVESEAKELSEEVMLGAVVFGHQQMQVVIDAINELADEAGKPEWDWTPAARNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+ K+ + E ++++AY+I +KQ+R K ++ +L +++ + ++
Sbjct: 241 AVHGKLNQLVEAELQEAYRITSKQLRSQRLKEVTAYAVETLTADDDAPDANA-VRNMVSA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++I+R +IL RID R +RPI+IR+G+LPR HGSSLFTRG+TQA+VVATLGT
Sbjct: 300 VEARIVRGRILAGEPRIDGRDTRTVRPIAIRSGVLPRAHGSSLFTRGETQAIVVATLGTG 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+ + FMLHYN PP+ATG+ GR+G PKRRE+GHGRLAKRALL VLP
Sbjct: 360 RDEQIIDALSGEYRERFMLHYNFPPYATGECGRVGTPKRREVGHGRLAKRALLAVLPAPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ HVAGIAMGLIK+G +V +L+
Sbjct: 420 DFSYTIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAHVAGIAMGLIKEGNRVAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +A + +IL++M+
Sbjct: 480 DILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAGEARLHILKQMQG 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S +APRL T+KI+P KIRDVIGKGG+ IR +TEETGT IDI D+G ITIAS
Sbjct: 540 SMSGHREEVSTYAPRLYTMKINPEKIRDVIGKGGAVIRAITEETGTTIDIKDDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A+ RIE +T V++GKVY G VL+L DFGAI+ IL G+DGLLHISQI+++RV
Sbjct: 600 VSGEAASAARARIESITADVEVGKVYDGTVLKLLDFGAIVSILPGRDGLLHISQIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + D+LK+ QKVRVKVL D++GR++LSM
Sbjct: 660 NAVADYLKDGQKVRVKVLEADEKGRVRLSM 689
>gi|422348484|ref|ZP_16429377.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 2_1_59BFAA]
gi|404659400|gb|EKB32252.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 2_1_59BFAA]
Length = 707
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/694 (57%), Positives = 536/694 (77%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KSF++G++ +++ GEIARQAT + + ++DTV+LATVV+ K+ +FFPLT
Sbjct: 3 MFNKVSKSFRFGNHDVTLTTGEIARQATGACICQMDDTVVLATVVAKKETKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP+G+ NE+Q++++VLS
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVIIHVLSA 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P +DPDI ++IG S AL+IS +PF GP+G +VGYI+ + ++NPTTE+LK S LDL+VA
Sbjct: 123 DPAVDPDIPAMIGASAALAISGIPFRGPIGACRVGYINDEIVINPTTEELKSSRLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ LPE +L A++ GH+ M++ I AINELV G+ +W P K++
Sbjct: 183 GTERAVLMVESEADILPEKTMLEAVMAGHKAMQVCIQAINELVAEAGKPAWDWQPAPKNE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT----IDINDINC 359
L+++I+ + + +++AY I++KQ R + + + L+ + D+N+++
Sbjct: 243 ALVARIVELCDTGLKEAYGIRSKQARTEKLREVYAACEAQLVADAEAAGTEAPDMNEVHG 302
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL++LE+K++R IL+ RID R +RPI IR +LPRTHGS+LFTRG+TQALV+ T
Sbjct: 303 ILFELEAKLVRSNILNGEPRIDGRDTRTVRPIEIRQSVLPRTHGSALFTRGETQALVLTT 362
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ ID L E D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL VL
Sbjct: 363 LGTKQDEQIIDGLCEETHDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALKAVL 422
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P +F Y+IR+VSEITESNGSSSMASVCGGCL++LDAGVP+ ++VAG+AMGLIK+G K
Sbjct: 423 PTAEEFQYTIRVVSEITESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNKF 482
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q AL +A +G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIEGITAEIMQAALAQAHEGRQHILG 542
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM ELS FAPR+I+ KID KIR+VIGKGG+TIR LTEETGT I+I D+G +
Sbjct: 543 KMHEMAGGGAKELSDFAPRMISFKIDQDKIREVIGKGGATIRALTEETGTTINIEDDGTV 602
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS ++ +EA+RRIE +T +++G++Y G V RL DFGAI+++L GKDGLLHISQI+
Sbjct: 603 TIASPDTARVEEARRRIEIITAKIEVGQIYEGTVQRLLDFGAIVQLLPGKDGLLHISQIA 662
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN ++D+LKE Q+VRVKV+ D++GR++LSM
Sbjct: 663 NERVNQVSDYLKEGQQVRVKVIEADEKGRVRLSM 696
>gi|395003996|ref|ZP_10388085.1| polyribonucleotide nucleotidyltransferase [Acidovorax sp. CF316]
gi|394318096|gb|EJE54566.1| polyribonucleotide nucleotidyltransferase [Acidovorax sp. CF316]
Length = 751
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/690 (58%), Positives = 532/690 (77%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +E GEIARQA+ +VLV+I+DTV+LATVV+ K +FFPLT
Sbjct: 3 IFNKVTKTFQWGDKTVIMETGEIARQASGAVLVNIDDTVVLATVVASKSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNEVHVVIHTVSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S AL+IS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAALIATSAALAISGIPFTGPIGAARVGYINGEYVLNPGQTARKSSQMDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGH++ +AINAI++LV++ G+ W KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGNVAINAIHDLVRDAGKPAWTWQAPAKDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ +++ K+ AYQI+NKQ R + + + L E + D + +L+D
Sbjct: 243 ALIAKVGALADDKLAAAYQIRNKQSRTQACREAYAAVMAGL-KAEGVEFDAVKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++++R QIL RID R +RPI IR +LPR HGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEARLVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRAHGSALFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D FM+HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEYEDRFMMHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIKD + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKDANRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARIHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGGS IR LTEETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEVSNFAPKLYTMKINPEKIRDVIGKGGSVIRALTEETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ EAKRRIE++T V+IGKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDNAKADEAKRRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L E Q V+VKV+ D++GR+KLSM
Sbjct: 662 ERVGDYLTEGQIVKVKVMETDEKGRVKLSM 691
>gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
K12]
gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
K12]
Length = 719
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/690 (57%), Positives = 541/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K+F++G +++++E GEIARQA+ +VL++++DTV+LATVV + + +FFPLT
Sbjct: 1 MFNKVVKTFQWGRHQVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREG+PSE ET+ISRLIDRPIRPLFPEG+ NE+Q+VV+VLS+
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGRPSENETLISRLIDRPIRPLFPEGFFNEVQVVVHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+++ DI +++ S AL++S LPF GP+G A+VGY++G Y+LNP+ +L S L+L+VA
Sbjct: 121 NPEVEADIPALLATSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLELVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L A++FGH + + AINAI+ELV++ G+ +W KD+
Sbjct: 181 GTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRDGGKPAWDWAAPEKDQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI +I ++ IR AY+I KQ R + + +++ L + ++ IL+D
Sbjct: 241 ALIDRIQALAGDDIRAAYKITQKQARTQALREAAAKVHAGLAEAGVAADAAK-VDGILFD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++I+R QIL RID R +RP+SIRT +LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 300 MEARIVRDQILAGEPRIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTD 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
+D Q IDAL GE+ D F+LHYNMPPFATG+ GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 360 QDAQIIDALGGEYRDRFLLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVLPKKE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSE+TESNGSSSMASVCGGCLALLDAGVP+ HVAGIAMGLIK+G + +L+
Sbjct: 420 DFAYTMRVVSEVTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +A++ +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSASGVTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + E+S+FAPRL T+KI+P +IRDVIGKGG+TIR LTEETGTQI+I ++G ITIAS
Sbjct: 540 AVGGAREEVSQFAPRLYTLKINPERIRDVIGKGGATIRALTEETGTQINIGEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ AK+RI LT V++G+VY G V+++ DFGA++ +L GKDGLLHISQI+++R+
Sbjct: 600 TDADKATIAKQRIIDLTAEVEVGQVYDGAVVKILDFGALVNVLPGKDGLLHISQIANERI 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++DFL+E QKVRVKV+ DD+GR +LS+
Sbjct: 660 NKVSDFLQEGQKVRVKVIETDDKGRFRLSI 689
>gi|372489341|ref|YP_005028906.1| polyribonucleotide nucleotidyltransferase [Dechlorosoma suillum PS]
gi|359355894|gb|AEV27065.1| polyribonucleotide nucleotidyltransferase [Dechlorosoma suillum PS]
Length = 707
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/690 (59%), Positives = 539/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN K+F YG++++++E GEIARQA+ +VLV+++DTV+L TVV K +FFPLT
Sbjct: 1 MFNIAKKTFTYGAHQVTLETGEIARQASGAVLVTVDDTVVLVTVVGAKQAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q+V V+S+
Sbjct: 61 VDYVEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQVVATVMSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DI ++IG S AL+IS +PF GP+G A+VGYIDG+Y+LNP+ QLK S LDL+VA
Sbjct: 121 NPEVDSDIPALIGASAALAISGIPFSGPIGAARVGYIDGQYVLNPSATQLKDSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+K+L E+++L A+++GHE+M+ INAINELV+ G+ + W +D+
Sbjct: 181 GTQSAVLMVESEAKELSEEVMLGAVVYGHEQMQAVINAINELVEEAGKPEWEWQAPAQDQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ K+ + + K+ +AY I +KQ R K I + ++L E+ D N + + +
Sbjct: 241 VLVGKLEALVKAKLEEAYSITSKQTRSQRVKEIRSEAVAALCQGEDAP-DENTVADLFFA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R +IL RID R +RPI++RTG+LPRTHGS+LFTRG+TQ LVVATLGTS
Sbjct: 300 MEAAIVRGRILAGEPRIDGRDTRTVRPITVRTGVLPRTHGSALFTRGETQGLVVATLGTS 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+ D FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRALL VLP +
Sbjct: 360 RDEQIIDALAGEYKDRFMLHYNMPPYATGETGRVGSPKRREIGHGRLAKRALLAVLPPAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+YS+R+VSEITESNGSSSMASVCGG LAL+DAGVP+ HVAGIAMGLIK+G + +L+
Sbjct: 420 EFSYSMRVVSEITESNGSSSMASVCGGSLALMDAGVPLKSHVAGIAMGLIKEGNRFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+ +AL +AK G +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGTDSGITALQMDIKIQGITKEIMAVALDQAKAGRLHILNIMQD 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ E+S +APRL T+KI+P KIRDVIGKGG+ IR LTEETGT IDI D+G ITIAS
Sbjct: 540 AQDAPRTEMSAYAPRLYTMKINPEKIRDVIGKGGAVIRALTEETGTSIDIQDDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + + A++RIE +T V++GKVY G VL++ DFGAI+ +L GKDGLLHISQI+++RV
Sbjct: 600 TDGEAAEMARKRIEAITAEVEVGKVYEGPVLKILDFGAIVSVLPGKDGLLHISQIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + D+LKE Q VRVKVL D++GRI+LSM
Sbjct: 660 NAVADYLKEGQVVRVKVLETDEKGRIRLSM 689
>gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase [Dechloromonas aromatica RCB]
gi|123760455|sp|Q47D98.1|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas
aromatica RCB]
Length = 715
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/690 (59%), Positives = 529/690 (76%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K+F YG ++++IE GE+ARQA +VLVS+E+TV+L TVV+ K+ +FFPLT
Sbjct: 1 MFNVVKKTFAYGDHQVTIETGEVARQAGGAVLVSMEETVVLVTVVAAKNAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY EK YAAGRIPG FFKREG+PSE+ET+ RLIDRPIRPLFP+G+ NE+Q++ V+S+
Sbjct: 61 VDYQEKTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPDGFYNEVQVIATVMSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+ID DI ++IG S AL+IS +PF GP+G A+VGYIDG+Y+L PT QLK S LDL+VA
Sbjct: 121 NPEIDSDIPALIGASAALAISGVPFNGPIGAARVGYIDGQYVLCPTLSQLKGSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L A++FGH +M+ AINAINELV+ G+ + W+ KD+
Sbjct: 181 GTEAAVLMVESEADQLSEEVMLGAVVFGHTEMQKAINAINELVEEAGKPEWEWEAAPKDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++ + + K+ +AY I KQ R K I + ++L D N + + ++
Sbjct: 241 ALVASLSALVSAKLEEAYNITVKQTRSQAVKAIRAEAVAALCTGAEGAPDENTVGNLFHE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R +IL RID R +RPI++R+G+LPRTHGS+LFTRG+TQAL VATLGT+
Sbjct: 301 IEASIVRGRILSGAPRIDGRDTRTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTN 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+ D FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALAGEYRDRFMLHYNMPPYATGECGRVGTPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+YS+RLVSEITESNGSSSMASVCGGCLALLDAGVP+ HVAGIAMGLIKDG + +L+
Sbjct: 421 DFSYSMRLVSEITESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKDGNRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK+ +IL M+
Sbjct: 481 DILGDEDHLGDMDFKVAGSTTGITALQMDIKIQGITKEIMQVALAQAKEARIHILNLMQE 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ E+S +APRL T KI+P KIRDVIGKGG+ IR LTEETGT IDI D+G ITIA+
Sbjct: 541 SAAGPREEMSAYAPRLYTFKINPEKIRDVIGKGGAVIRALTEETGTTIDIQDDGTITIAA 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A+ RI+ +T V+IGK+Y G VL++ DFGAI+ +L GKDGLLHISQI+ +RV
Sbjct: 601 TSGEAAAAARSRIDAITAEVEIGKIYEGTVLKILDFGAIVSVLPGKDGLLHISQIAQERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + D++KE Q VRVKVL DDRGR+KLSM
Sbjct: 661 NKVEDYVKEGQIVRVKVLETDDRGRVKLSM 690
>gi|339483022|ref|YP_004694808.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. Is79A3]
gi|338805167|gb|AEJ01409.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. Is79A3]
Length = 706
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/687 (60%), Positives = 532/687 (77%), Gaps = 2/687 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KS YG +++++E GEIARQA +V+V+++DTV+L TVV K +FFPLTVDY
Sbjct: 4 IKKSITYGRHQLTLETGEIARQAHGAVMVTMDDTVVLVTVVGAKTIKPGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPGSFFKREG+PSE+ET+ SRLIDRPIRPLFPEG+ NE+QIV V+S + ++
Sbjct: 64 EKFYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSADTEV 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
D DI SIIG S AL +S +PF GPLG A+VGYI+ +Y+LNPTT +LK + L+L+VAGT++
Sbjct: 124 DADIPSIIGTSAALILSGIPFDGPLGAARVGYINNEYVLNPTTSELKDTQLNLVVAGTQQ 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ +L E+++L A+IFGHE+M+ INAINE G +W P VKD +
Sbjct: 184 AVLMVESEAMELSEEVMLGAVIFGHEQMQAVINAINEFADEAGVTAWDWTPPVKDTSFEE 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYDLES 366
KI +++E +R AY+IK KQ R + IS+ I + + +D E D+ + LE+
Sbjct: 244 KIASLAEADLRMAYKIKQKQARSEAIEAISQRISTEIGVDTEG-GPDLQSFKEAFFALEA 302
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
KI+R QILD RID RG +R I+IR G+LPRTHGS+LFTRG+TQAL VATLGT+RDE
Sbjct: 303 KIVRNQILDGEPRIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAVATLGTARDE 362
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
QKID+L G++ D FMLHYNMPP+ATG+IGR+G PKRREIGHGRLAKRA+ VLP+ +F
Sbjct: 363 QKIDSLQGDYNDRFMLHYNMPPYATGEIGRVGTPKRREIGHGRLAKRAIAAVLPSPEEFG 422
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
YS+R+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIKDG + +L+DIL
Sbjct: 423 YSLRVVSEITESNGSSSMASVCGGCLALMDAGVPLKAHVAGIAMGLIKDGNRFAVLTDIL 482
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGT GITALQMDIKI GIT DI+ AL +A +G +IL+ MK +P
Sbjct: 483 GDEDHLGDMDFKVAGTEKGITALQMDIKIQGITKDIMHAALIQAHEGRMHILQIMKQALP 542
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ ++S APR+I IKI+P KIRDVIGKGG+ IR LTEETGT IDI D+G +TIA +S
Sbjct: 543 STREDISVHAPRIIKIKINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGQVTIACVSS 602
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
G+ A++RIE +T V++GK+Y GIVL+L DFGAI+ +L GKDGLLHISQI+++RVN +
Sbjct: 603 EGGELARKRIEDITAEVEVGKIYDGIVLKLLDFGAIVSVLPGKDGLLHISQIANERVNNV 662
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
+D L E Q+VRVKVL DD+GR++LSM
Sbjct: 663 SDHLNEGQQVRVKVLEADDKGRLRLSM 689
>gi|348617851|ref|ZP_08884385.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816795|emb|CCD29035.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 704
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/694 (57%), Positives = 527/694 (75%), Gaps = 4/694 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+FNK++K F++G++ + +E GEIARQA + LV +++T+ LATVV K + +FFPL
Sbjct: 2 MMFNKVVKQFQWGNHPVRLETGEIARQAGGAALVDVDETLALATVVGAKSARPSQDFFPL 61
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TVDYIEK+YAAGRIPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG NE+QIVV+VLS
Sbjct: 62 TVDYIEKSYAAGRIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGLRNEVQIVVHVLS 121
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+NP++ DI ++IG S AL++S +PF GP+G A+V YI+G+Y LNPT Q+K+S LDL+V
Sbjct: 122 LNPEVPADIPALIGASAALALSGIPFNGPIGAARVAYINGQYALNPTRAQMKESALDLVV 181
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE++QL E+++L A++FGH++M+ AI AI+ LV G+ + NW P +D
Sbjct: 182 AGTEHAVLMVESEARQLSEEVMLGAVMFGHQQMQTAIQAIHALVSEAGRPEWNWRPEPRD 241
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDIN 358
+ L +I ++ R AYQ + K R + + + + L + +N
Sbjct: 242 EALFERIRALAYEDFRAAYQRREKTARSEQLRTVRATVTAQLAAEAEAAGGVAPEHATVN 301
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
+L++LE++I+R QIL RID R +RPISIR+G+LPR HGS+LFTRG+TQAL V
Sbjct: 302 AMLFELEAQIVRAQILSGEPRIDGRSTRAVRPISIRSGVLPRAHGSALFTRGETQALAVT 361
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT DEQ IDA+ GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLA+RAL PV
Sbjct: 362 TLGTKSDEQMIDAIEGEYRDRFMLHYNMPPFATGETGRVGAPKRREIGHGRLARRALAPV 421
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP+ F Y+IR+VSEITESNGSSSMASVCGG LAL+DAGVP+ HVAGIAMGLI +G +
Sbjct: 422 LPDEQSFGYTIRVVSEITESNGSSSMASVCGGSLALMDAGVPVKAHVAGIAMGLILEGNR 481
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+L+DILGDED GDMDFKVAGT GITALQMDIKI G+T +I++IAL +A++G +IL
Sbjct: 482 FAVLTDILGDEDHLGDMDFKVAGTAQGITALQMDIKIAGVTEEIMRIALAQAREGRLHIL 541
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
E+M+ + ++ELS FAPR++TI+I KIRDVIGKGGS IR LTEETG IDI+++G
Sbjct: 542 EQMQGAIAGARSELSTFAPRMVTIRIPTDKIRDVIGKGGSVIRALTEETGATIDISEDGS 601
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
ITI+S S + + A+RRIE+LT V++G+VYTG V +L DFGAI+ +L G+DGLLHIS+I
Sbjct: 602 ITISSARSEAIEAARRRIEELTLEVEVGQVYTGTVSKLMDFGAIVNLLPGRDGLLHISEI 661
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ +RV ++D LKE +RVKV+ D++ RI+LS
Sbjct: 662 THQRVEKVSDHLKEGALIRVKVIQKDEKNRIRLS 695
>gi|410694440|ref|YP_003625062.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Thiomonas sp. 3As]
gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Thiomonas sp. 3As]
Length = 719
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/690 (57%), Positives = 540/690 (78%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK++K+F++G +++++E GEIARQA+ +VL++++DTV+LATVV + + +FFPLT
Sbjct: 1 MFNKVVKTFQWGRHQVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAGRIPG FFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+VV+VLS+
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFFNEVQVVVHVLSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+++ DI +++ S AL++S LPF GP+G A+VGY++G Y+LNP+ +L S L+L+VA
Sbjct: 121 NPEVEADIPALLASSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLELVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ QL E+++L A++FGH + + AINAI+ELV++ G+ +W KD+
Sbjct: 181 GTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRDGGKPAWDWAAPEKDQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI +I ++ IR AY+I KQ R + + +++ L + ++ IL+D
Sbjct: 241 ALIDRIQALAGDDIRAAYKITQKQARTQALREAAAKVHAGLAEAGIAADAAK-VDGILFD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E++I+R QIL RID R +RP+SIRT +LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 300 MEARIVRDQILAGEPRIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTD 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
+D Q IDAL GE+ D F+LHYNMPPFATG+ GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 360 QDAQIIDALGGEYRDRFLLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVLPKKE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSE+TESNGSSSMASVCGGCLALLDAGVP+ HVAGIAMGLIK+G + +L+
Sbjct: 420 DFAYTMRVVSEVTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +A++ +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSASGVTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + E+S+FAPRL T+KI+P +IRDVIGKGG+TIR LTEETGTQI+I ++G ITIAS
Sbjct: 540 AVGGAREEVSQFAPRLYTLKINPERIRDVIGKGGATIRALTEETGTQINIGEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ AK+RI LT V++G+VY G V+++ DFGA++ +L GKDGLLHISQI+++R+
Sbjct: 600 TDADKATIAKQRIIDLTAEVEVGQVYDGAVVKILDFGALVNVLPGKDGLLHISQIANERI 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++DFL+E QKVRVKV+ DD+GR +LS+
Sbjct: 660 NKVSDFLQEGQKVRVKVIETDDKGRFRLSI 689
>gi|217970113|ref|YP_002355347.1| polynucleotide phosphorylase/polyadenylase [Thauera sp. MZ1T]
gi|217507440|gb|ACK54451.1| Polyribonucleotide nucleotidyltransferase [Thauera sp. MZ1T]
Length = 699
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/686 (56%), Positives = 535/686 (77%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F YG++ +++E GE+ARQA +V+V++++TV+LATVV K+ +FFPLTVDY+
Sbjct: 5 IKKTFAYGAHTVTLETGEVARQAGGAVIVNMDETVVLATVVGAKEARPGQDFFPLTVDYV 64
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FFKREG+PSE+E + SRLIDRPIRPLFP+G++NE+Q++V VLS+NP+I
Sbjct: 65 EKFYAAGRIPGGFFKREGRPSEKEILTSRLIDRPIRPLFPDGFMNEVQVIVTVLSLNPEI 124
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
D DI ++IG S AL+IS LPF GP+G A+VGY+DGKYILNPT +L+ S ++L+VAGT+
Sbjct: 125 DSDIPAMIGASAALAISGLPFNGPVGAARVGYLDGKYILNPTATELQSSAMNLVVAGTQT 184
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+++LPED++L A++FGHE+M+ AI AIN+LV+ G+ + +W + LI+
Sbjct: 185 AVLMVESEAQELPEDVMLGAVVFGHEQMQTAIKAINDLVEVAGKPEWDWQAPPANAALIA 244
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ +++ ++ +A++I +KQ R I K + L + +N++ + ++LES
Sbjct: 245 KVTELAKAEMEEAFRITSKQERSARLSEIRKRVIGQLTEGVENAPSVNELKDLFFNLESG 304
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +IL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVATLGT RDEQ
Sbjct: 305 IVRSRILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQ 364
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDA+ GE+ + F+LHYN PPF TG+ GR G+ KRRE+GHGRLAKR+L+ +LP +F+Y
Sbjct: 365 IIDAIAGEYKERFLLHYNFPPFCTGETGRFGITKRREVGHGRLAKRSLVAMLPKPEEFSY 424
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
++R+VSEITESNGSSSMASVCGG LA++DAGVP+ HVAGIAMGLIKDG + +L+DILG
Sbjct: 425 TVRVVSEITESNGSSSMASVCGGSLAMMDAGVPLKNHVAGIAMGLIKDGNRFAVLTDILG 484
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT NGIT LQMDIKI GIT +I+ AL +AK+G +IL M+ +
Sbjct: 485 DEDHLGDMDFKVAGTENGITGLQMDIKIQGITKEIMHAALEQAKEGRLHILGLMQQALGT 544
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S++APR+I +KI+P KIRDVIGKGG+ IR L EETGT I+I D+G + I+S ++
Sbjct: 545 SRGQVSEYAPRMINMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSVKISSVSAE 604
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
Q AK RIE +T V++GKVY G V+RL DFGAI+ I+ G+DGLLH+SQI+++RVN ++
Sbjct: 605 GAQAAKARIEAITAEVEVGKVYEGPVVRLLDFGAIVNIMPGRDGLLHVSQIANERVNNVS 664
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D++KE Q VRVKVL D+RG+I+LSM
Sbjct: 665 DYVKEGQVVRVKVLETDERGKIRLSM 690
>gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter
eiseniae EF01-2]
gi|187611331|sp|A1WLP8.1|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2]
Length = 757
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/690 (58%), Positives = 530/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +E GEIARQA+ +VLVSI+DTV+LATVV+ + +FFPLT
Sbjct: 3 IFNKVTKTFQWGDQTVVMETGEIARQASGAVLVSIDDTVVLATVVASRSIKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRP+RPLFP+G+ NE+ +V++ LS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPLRPLFPQGFFNEVHLVIHTLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S AL++S +PF GP+G A+VGYI G+Y LNP K S LDL+VA
Sbjct: 123 NPEVDADIAALIASSAALALSGIPFNGPIGAARVGYIQGEYRLNPGPTARKSSQLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QL E+I+L A++FGH++ K+AI+AI+ELV G+ W+ +D+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHQQGKVAIDAIHELVHAAGKPVWQWEAPARDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+++ +++ K+R AYQI+NKQ R + + + L + + D +L+D
Sbjct: 243 ALIARVAALADDKLRAAYQIRNKQARTEACRAAYAAVLAQL-QADGVECDTVKAEGLLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +RPI IR G+LPR HGS+LFTRG+TQAL VATLGT
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D FMLHYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEYDDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIKDG + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDGNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQQ 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+ KIRDVIGKGG+ IR LTEETG QI+I ++G ITIA+
Sbjct: 542 AIGQAKTEVSNFAPKLYTMKINAEKIRDVIGKGGAVIRALTEETGCQINIEEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ AKRRIE++T ++IGK+Y G V +L DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDAAKADIAKRRIEQITAEIEIGKIYEGPVTKLLDFGALINLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L E Q VRVKV+ D+RGR+KLSM
Sbjct: 662 ERVSDYLSEGQIVRVKVMEADERGRVKLSM 691
>gi|358637268|dbj|BAL24565.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. KH32C]
Length = 700
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/686 (57%), Positives = 543/686 (79%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F YG++ +++E GEIARQA +V+V+++DTV+LATVV+ K+ + +FFPLTVDY+
Sbjct: 5 IKKTFAYGAHTVTLETGEIARQAGGAVIVNMDDTVVLATVVAAKEAKAGQDFFPLTVDYV 64
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G+ NE+QI+V VLS+NP+I
Sbjct: 65 EKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPDGFYNEVQIIVTVLSLNPEI 124
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPD+ ++I S AL+IS +PF+GP+G +VGY++G+Y+LNPT EQLK S L+L+VAGTE
Sbjct: 125 DPDMPAMIAASAALAISGVPFMGPIGACRVGYVNGEYVLNPTVEQLKSSQLNLVVAGTEV 184
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ +L E+++L +++FGH++M+ AI AINELV+ G+ + NW P K++ LI+
Sbjct: 185 AVLMVESEANELSEEVMLGSVVFGHQQMQAAIRAINELVEVAGKPEWNWQPPAKNEPLIA 244
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+I ++ ++ +A++I +KQ R I K +++ + N++ I ++LE+
Sbjct: 245 RIKELAGAQVEEAFRITSKQARTERLNEIRKQAIAAISEGVEDVPSANELKDIFHELEAG 304
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R +RPI IR G+LPRTHGS+LFTRG+TQALV+ATLGT RDEQ
Sbjct: 305 VVRSRILAGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQ 364
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDA+ GE+ ++F+LHYN PPF+TG+ GR+GV KRRE+GHGRLAKRAL+ LP +F+Y
Sbjct: 365 IIDAIAGEYRENFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALVAALPAPEEFSY 424
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+IR+VSEITESNGSSSMASVCGG LA++DAGVP+ HVAGIAMGLIK+G + +L+DILG
Sbjct: 425 TIRVVSEITESNGSSSMASVCGGSLAMMDAGVPMRAHVAGIAMGLIKEGNRFAVLTDILG 484
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A++G +IL MK +
Sbjct: 485 DEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALGQAREGRMHILGIMKQSLAS 544
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S+FAPR++T+KI+P KIRDVIGKGG+ IR L EETGT I++ D+G +TI+S ++
Sbjct: 545 HRGEVSEFAPRMLTMKINPEKIRDVIGKGGAVIRALQEETGTIIELEDDGSVTISSVSAE 604
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ AK+RIE +T V++GKVY G V+RL DFGAI+ IL G+DGLLH+SQI+++RVN +
Sbjct: 605 GAEAAKKRIEAITAEVEVGKVYEGTVMRLLDFGAIVNILPGRDGLLHVSQIANERVNNVA 664
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D++KE Q VRVKVL D+RG+I+LSM
Sbjct: 665 DYVKEGQVVRVKVLETDERGKIRLSM 690
>gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea
ATCC 19718]
gi|81584849|sp|Q82XT0.1|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein
[Nitrosomonas europaea ATCC 19718]
Length = 708
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/686 (58%), Positives = 525/686 (76%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KS YG + ++IE GEIA+QA +V+VS++DTV+L T V K +FFPLTVDY
Sbjct: 4 IKKSITYGRHTLTIETGEIAKQAHGAVIVSMDDTVVLVTAVGDKKTKPGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK Y+AGRIPGSFFKREG+PSE+ET+ SRLIDRPIRPLFP+G+ NE+Q+V VLS + +I
Sbjct: 64 EKFYSAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGFYNEVQVVAMVLSSDTEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
D DI ++IG S AL +S +PF GP+G A+VGYI+ +YILNPTT QLK+S L+L+VAGT+K
Sbjct: 124 DADIPAMIGTSAALILSGIPFDGPVGAARVGYINNEYILNPTTTQLKESQLNLVVAGTQK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ +L ED++L A+ +GH++M+ I+ INEL G +W P +D +L+
Sbjct: 184 AVLMVESEADELSEDVMLGAVTYGHDQMQQVIDMINELADEAGVTAWDWQPAEQDLSLVE 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E +R A+++K K R I + +++ L + I + LE++
Sbjct: 244 KVTQLAEADLRNAFRLKQKSARVEAINEIWQRVFTELKVGTEEGPSEQAVREIGFALEAR 303
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R ILD RID RG +RPI+IR G+LPRTHGS+LFTRG+TQAL + TLGT+RDEQ
Sbjct: 304 IVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTARDEQ 363
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
KIDAL G++++ FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRALL V+P +F Y
Sbjct: 364 KIDALQGDYSERFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVIPPVEEFGY 423
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
S+R+VSE+TESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+G + +L+DILG
Sbjct: 424 SMRVVSEVTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEGNRFAVLTDILG 483
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT +GITALQMDIKI GIT +I+Q+AL +AK+G +ILE MK +P
Sbjct: 484 DEDHLGDMDFKVAGTEHGITALQMDIKIQGITKEIMQVALLQAKEGRLHILEIMKQSLPI 543
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ +S APR+I KI+P KIRDVIGKGG+ IR LTEETGT IDI+D+G +TIA +S
Sbjct: 544 ARESISVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTIDISDDGSVTIACVSSE 603
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
G++A++RIE +T V++G++Y G VL+L DFGAI+ +L GKDGLLHISQI+++RV +
Sbjct: 604 GGEQARKRIEDITADVEVGRIYEGTVLKLLDFGAIVSVLPGKDGLLHISQIANERVENVA 663
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D LKE Q VRVKVL D++GR++LSM
Sbjct: 664 DHLKEGQTVRVKVLEADEKGRLRLSM 689
>gi|417957807|ref|ZP_12600726.1| polyribonucleotide nucleotidyltransferase [Neisseria weaveri ATCC
51223]
gi|343967871|gb|EGV36111.1| polyribonucleotide nucleotidyltransferase [Neisseria weaveri ATCC
51223]
Length = 726
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/694 (57%), Positives = 524/694 (75%), Gaps = 3/694 (0%)
Query: 62 NFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFP 121
N +FNK +KSF+YG + +++E GEIARQA ++V VS+ DTV+L V + KD +FFP
Sbjct: 16 NEMFNKHVKSFQYGEHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFP 75
Query: 122 LTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVL 181
LTVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+
Sbjct: 76 LTVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVV 135
Query: 182 SVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLL 241
SV+P+ID DI ++IG S AL +S +PF GP+G A+VGY++ Y+LNPT QL KS +DL+
Sbjct: 136 SVDPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNNVYVLNPTKAQLAKSQMDLV 195
Query: 242 VAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVK 301
VAGT+KA++ VESE+++LPE ++L A+++GHE+M+ INAINE V + +W P
Sbjct: 196 VAGTQKAVLMVESEAQELPEHVMLGAVVYGHEQMQAVINAINEFADEVNPEVWDWKPAET 255
Query: 302 DKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCIL 361
D L+ KI I+ I +A++I+ KQ R + +LI E T+ N I I
Sbjct: 256 DSALVEKIRAIAGETIGEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLTANQIKGIF 315
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE+ ++R QILD RID R +RPI+I+TG+LPRTHGS+LFTRG+TQAL VATLG
Sbjct: 316 KQLEADVVRGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLG 375
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 376 TQRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALVAVLPS 435
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +
Sbjct: 436 PEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAV 495
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL +M
Sbjct: 496 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQM 555
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
K E ELS+ APRL T+KI+ KIRDVIGKGG TIR +T ETGT+I+I ++G ITI
Sbjct: 556 K-EAVDGPQELSQHAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTEINIAEDGTITI 614
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQIS 719
A+ +G AKRRIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 615 AATTQEAGDAAKRRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIA 674
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV ++D+L+ Q V+VK L +DDRGR++LSM
Sbjct: 675 HERVKNVSDYLQVGQNVKVKALEVDDRGRVRLSM 708
>gi|347540630|ref|YP_004848055.1| polynucleotide phosphorylase/polyadenylase [Pseudogulbenkiania sp.
NH8B]
gi|345643808|dbj|BAK77641.1| polynucleotide phosphorylase/polyadenylase [Pseudogulbenkiania sp.
NH8B]
Length = 715
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/692 (57%), Positives = 532/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI K+F+YG + +++E GE+ARQA+ +VLV++EDTV+L +VV ++ +FFPLT
Sbjct: 1 MFNKISKTFQYGRHTVTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ +++QIV V+S+
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+ID DI ++IG S AL+IS LPF GP+G A+VGY +G YILNPT +L+ S LDL+VA
Sbjct: 121 NPEIDSDIPAMIGASAALAISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT +A++ VESE+K+LPE ++L A++FGH++M+ AI AINEL V +W ++
Sbjct: 181 GTHRAVLMVESEAKELPEAVMLGAVVFGHDQMQAAIKAINELADEVNPVMWDWSASAQNN 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ +S KI A++I+ KQ R D+ ++LI E T+ N+I I
Sbjct: 241 ELIAKVREVSGEKIANAFRIRQKQARTQVLAEAWADVKAALITEETDTLTANEIKGIFKS 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE++I+R QIL RID R +RPI+IRTG+LPRTHGS+LFTRG+TQA+VV TLGT
Sbjct: 301 LEAEIVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLGTQ 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG+ GR+G PKRREIGHGRLAKRAL VLP+ +
Sbjct: 361 RDEQIIDALAGEYTDRFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALAQVLPSAD 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F YS+R+VSEITESNGSSSMASVCGGCLALL+AGVP+ HVAGIAMGLI +G + +L+
Sbjct: 421 EFGYSMRVVSEITESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALDQAKEGRLHILGLMK- 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E + +LS APRL +KI+P KIR+VIGKGG TIR++T++TGT+I+I ++G ITIAS
Sbjct: 540 EAVEGPQQLSTHAPRLFVMKINPDKIREVIGKGGETIRSITKDTGTEINIEEDGTITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
AK+RIE++T V++GK+Y G V+++ D GAI+ IL GKDGL+HISQI+++
Sbjct: 600 VTQEGADAAKKRIEEITVEVEVGKIYEGTVVKILDNNVGAIVSILPGKDGLVHISQIANE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
R+ ++D+LKE Q V+VK + +DDRGRI+LS+
Sbjct: 660 RIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSI 691
>gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha
C91]
gi|122313196|sp|Q0AE53.1|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91]
Length = 705
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/686 (59%), Positives = 525/686 (76%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KS YG + ++IE GEIA+QA +V+VS++DTV+L TVV K +FFPLTVDY
Sbjct: 4 IKKSITYGHHTLTIETGEIAKQAHGAVMVSMDDTVVLVTVVGDKKTKPGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK Y+AGRIPGSFFKREG+PSE+E + SRLIDRPIRPLFP+G+ NE+Q++ VLS + +I
Sbjct: 64 EKFYSAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPDGFYNEVQVIAMVLSSDAEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
D DI + IG S AL +S +PF GP+G A+VGYID +Y+LNPTT QL KS L+L+VAGT+K
Sbjct: 124 DADIPATIGASAALILSGIPFDGPIGAARVGYIDNEYVLNPTTTQLNKSQLNLVVAGTQK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ +L ED++L A+ +GH++M+ IN INEL G +W P KD +LI
Sbjct: 184 AVLMVESEANELSEDVMLGAVTYGHDQMQQVINMINELADETGVTAWDWQPAEKDHSLIE 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
KI ++E +R A+++K K +R I + +++ L I I + LE+K
Sbjct: 244 KITQLAEADLRDAFRLKQKSVRTEAISEIWQRVFTELKAGTEEGPSEQTIKEIGFALEAK 303
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R ILD RID RG +RPI+IR G+LPRTHGS+LFTRG+TQALVV TLGT+RDEQ
Sbjct: 304 IVRNSILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTARDEQ 363
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
KIDAL G++++ FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRALL VLP +F Y
Sbjct: 364 KIDALQGDYSERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALLAVLPPVEEFGY 423
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
++R+VSE+TESNGSSSMASVCGGCLAL+DAG P+ HVAGIAMGLIK+G + +L+DILG
Sbjct: 424 AMRVVSEVTESNGSSSMASVCGGCLALMDAGAPLKAHVAGIAMGLIKEGNRFAVLTDILG 483
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+G +IL+ MK +P
Sbjct: 484 DEDHLGDMDFKVAGTEEGITALQMDIKIQGITKEIMQVALLQAKEGRLHILDIMKQSLPI 543
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++ +S APR+I KI+P KIRDVIGKGG+ IR LTEETGT IDI+D+G +TIAS ++
Sbjct: 544 ARDSVSVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGTTIDISDDGSVTIASISNE 603
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
G++AKRRIE +T V++GK+Y G VL+L DFGAI+ IL GKDGLLHISQI+++RV +
Sbjct: 604 GGEQAKRRIENITADVEVGKIYEGTVLKLLDFGAIVSILPGKDGLLHISQIANERVESVA 663
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D LKE Q +RVKVL DD+GR++LSM
Sbjct: 664 DHLKEGQIIRVKVLEADDKGRLRLSM 689
>gi|347818895|ref|ZP_08872329.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 749
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 531/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F++G + +E GEIARQA+ +VLV+I+DTV+LATVV+ + +FFPLT
Sbjct: 3 IFNKVSKTFQWGDKTVVMETGEIARQASGAVLVAIDDTVVLATVVASRSAKPGQDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+LNE+ +V++ LS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSL 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DIA++I S AL+IS +PF GP+G A+VGYIDG+Y LNP K S LDL+VA
Sbjct: 123 NPEVDADIAALIASSAALAISGIPFNGPIGAARVGYIDGEYRLNPGPTARKNSQLDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QLPE+I+L A++FGH + K+ I+AI++LV+ G+ W +D+
Sbjct: 183 GTEAAVLMVESEARQLPEEIMLGAVVFGHAQGKVVIDAIHDLVREAGKPVWQWAAPARDE 242
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ ++ ++R AYQ++NKQ R + + S L L D + +L+D
Sbjct: 243 ALIAKVTALANDRLRAAYQLRNKQARTQACREAYAAVLSDLAAG-GLGFDATKVEGMLFD 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E+ I+R QIL RID R +R I IR+G+LPR HGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEAGIVRSQILAGEPRIDGRDTRTVRAIEIRSGVLPRAHGSALFTRGETQALVVTTLGTE 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q+IDAL GE+ D FMLHYNMPPFATG++GR+G KRREIGHGRLAKRAL VLP+
Sbjct: 362 RDAQRIDALAGEYEDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAAVLPSKE 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIKDG + +L+
Sbjct: 422 EFPYTLRVVSEITESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKDGNRFAVLT 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTEGITALQMDIKIQGITREIMQVALAQAKEARMHILGKMQE 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+ IR LTEETG QIDI ++G ITIA+
Sbjct: 542 AMGESKAEVSHFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQIDIGEDGTITIAA 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ EAKRRIE++T V+IGK+Y G V ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 TQAAQADEAKRRIEQITAEVEIGKIYEGAVTKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L E Q V+VKV+ D++GRIKLSM
Sbjct: 662 ERVSDYLSEGQVVKVKVMETDEKGRIKLSM 691
>gi|291613953|ref|YP_003524110.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
lithotrophicus ES-1]
gi|291584065|gb|ADE11723.1| polyribonucleotide nucleotidyltransferase [Sideroxydans
lithotrophicus ES-1]
Length = 709
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/684 (58%), Positives = 533/684 (77%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
K+ YG +++++E GEIARQ++ +++VS++DTV+L TVV KD +FFPLTVDY E+
Sbjct: 11 KTLSYGKHQLTLETGEIARQSSGAIMVSLDDTVVLVTVVGRKDAKPDQDFFPLTVDYQER 70
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YAAG+IPG FFKREG+PSE+E + SRLIDRP+RPLFPE + NE+QIV V+S +PQID
Sbjct: 71 TYAAGKIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPESFYNEVQIVATVMSSDPQIDS 130
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI ++IG S AL+IS +PF GP+G A+VGY++G+Y+LNPT ++L +S +DL+VAGT KA+
Sbjct: 131 DIPAMIGASAALAISGIPFDGPIGAARVGYLNGQYVLNPTKDELVESKMDLVVAGTAKAV 190
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
+ VESE+++L ED++L A++FGHE+M+ INAINE+ +VGQ +W P K++ LI++I
Sbjct: 191 LMVESEAQELSEDVMLGAVVFGHEQMQAVINAINEMADSVGQDDWDWTPAPKNEALIARI 250
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKII 369
++E++++ AY ++ KQ R I + +L E + N+I + LE+KI+
Sbjct: 251 NALAENELKAAYAVRQKQARTQQVDAIRAKVSEALATPEFENVSRNEIGELFSALEAKIV 310
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R QIL RID R +RPI+IRTG+LPRTHGS LFTRG+TQALVVATLG+ RD Q I
Sbjct: 311 RGQILSGEPRIDGRDTRTVRPITIRTGVLPRTHGSVLFTRGETQALVVATLGSMRDSQTI 370
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DAL GE++D FMLHYN PP++TG+ GR+G PKRREIGHGRLAKRAL+ VLP+ + Y+I
Sbjct: 371 DALQGEYSDRFMLHYNFPPYSTGETGRVGTPKRREIGHGRLAKRALVAVLPSEEECGYAI 430
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIKDG + +L+DILGDE
Sbjct: 431 RVVSEITESNGSSSMASVCGGCLSLMDAGVPVKTHVAGIAMGLIKDGGRFAVLTDILGDE 490
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK+G +IL MK +P +
Sbjct: 491 DHLGDMDFKVAGSDKGITALQMDIKINGITKEIMQVALSQAKEGRLHILGIMKQAMPSVR 550
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
E+S FAPR+I +KI+P KIRDVIGKGG+ IR LTEETGT IDI+DEG ITIA + +G
Sbjct: 551 PEVSDFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDEGNITIACVSGDAG 610
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AK+RIE + V++GK+Y G V++L DFGA++ IL GKDGLLHISQIS +R+ ++D
Sbjct: 611 ELAKKRIEDIVAEVEVGKIYEGPVVKLLDFGALVNILPGKDGLLHISQISHERIANVSDH 670
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
LKE Q V+VKVL +DD+GR++LSM
Sbjct: 671 LKEGQVVKVKVLEVDDKGRMRLSM 694
>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
FAM18]
gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis FAM18]
Length = 711
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/697 (56%), Positives = 529/697 (75%), Gaps = 3/697 (0%)
Query: 59 MKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
MKG +FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +
Sbjct: 1 MKGTIMFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQD 60
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV
Sbjct: 61 FFPLTVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVA 120
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
V+SV+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS L
Sbjct: 121 MVVSVDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQL 180
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W
Sbjct: 181 DLVVAGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKA 240
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDIN 358
++ L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I
Sbjct: 241 PETNEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIK 300
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
I LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VA
Sbjct: 301 GIFKHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA 360
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGTSRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL V
Sbjct: 361 TLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAV 420
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K
Sbjct: 421 LPKPEDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNK 480
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL
Sbjct: 481 FAVLTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHIL 540
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
++MK V ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G
Sbjct: 541 DQMKAAV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGT 599
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHIS 716
ITIA+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HIS
Sbjct: 600 ITIAATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHIS 659
Query: 717 QISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
QI+ +RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 QIAHERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 696
>gi|411001024|gb|AFV98755.1| polyribonucleotide nucleotidyltransferase [Candidatus Snodgrassella
sp. T3_2_35043]
Length = 707
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/692 (58%), Positives = 525/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK IK+F+YG+ +++E GEIARQA +V +S+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHIKTFQYGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ N+IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL ++ +PF GP+G A+VGY++G+Y+LNPT QL +S LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKTQLAQSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTEKA++ VESE+ L E+ +L A++FGHE+M+ AI AINE V + +W V D+
Sbjct: 181 GTEKAVLMVESEADVLSEETMLGAVVFGHEQMQAAIRAINEFADEVNPEMWDWQAPVADE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+LI+K+ ++ I +A++IK KQ R + ++LI E T+ N I I D
Sbjct: 241 SLIAKVRELAGATIDEAFKIKQKQARTAKLDEAWSAVEAALITEETDTLLANQIRGIFKD 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R QIL+ RID R +RPI+IRTG+LPRTHGS+LFTRG+TQ+L ATLGT
Sbjct: 301 LEKEVVRGQILEGQPRIDGRDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLGTQ 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPDVE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVC GCL+LL+AGVP+ HVAGIAMGLI DG K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ IL +M+
Sbjct: 481 DILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQMQ- 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E K ELS APRL T+KI KIRDVIGKGG TIR LT ETGT+I+I ++G ITIA+
Sbjct: 540 EAVKGPQELSAHAPRLFTMKIHQDKIRDVIGKGGETIRALTAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
S +G+ AKRRIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQIS
Sbjct: 600 STSEAGEAAKRRIEEITAEVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQISHD 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q+V+VK L IDDRGR++LS+
Sbjct: 660 RVKNVSDYLQIGQQVKVKALEIDDRGRVRLSI 691
>gi|394988388|ref|ZP_10381224.1| polynucleotide phosphorylase/polyadenylase [Sulfuricella
denitrificans skB26]
gi|393792384|dbj|GAB70863.1| polynucleotide phosphorylase/polyadenylase [Sulfuricella
denitrificans skB26]
Length = 707
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/689 (58%), Positives = 523/689 (75%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
+ I KS +G + +++E GEIARQA+ +++VS++DTV+L TVV K +FFPLTV
Sbjct: 1 MSHIKKSIAFGRHTLTLETGEIARQASGAIMVSLDDTVVLVTVVGAKSVKPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAGRIPG FFKREG+PSE+E + SRLIDRP+RPLFPEG+ N++QIV V+S
Sbjct: 61 DYQERTYAAGRIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPEGFYNDVQIVATVMSSE 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
+ID DI ++IG S AL+IS +PF GP+G A+V Y++G+Y+LNPT +LK S LDL+VAG
Sbjct: 121 SEIDSDIPALIGASAALAISGIPFNGPIGAARVAYVNGEYVLNPTATELKASQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ +LPED++L A++FGH++M+ IN INEL V +W +D+T
Sbjct: 181 TESAVLMVESEAMELPEDVMLGAVVFGHDEMQAVINLINELADEVAAAPWDWKAPEQDQT 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI KI +++ ++ +AY+++ KQ R I + L+ + T +N I I +L
Sbjct: 241 LIEKIAQLAQAELNEAYKVRQKQDRYQKIDAIRSRVLGELLTEDMDTARVNQIKGIFENL 300
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E+KI+R QIL+ RID R +RPI+IRTG+LPR HGS LFTRG+TQALVVATLGT R
Sbjct: 301 EAKIVRSQILEGEPRIDGRDTRTVRPITIRTGVLPRVHGSVLFTRGETQALVVATLGTGR 360
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
DEQ IDAL GE+ D F+LHYN PP+ATG+ GR+G PKRREIGHGRLAKRAL+ LP+ +
Sbjct: 361 DEQTIDALQGEYKDRFLLHYNFPPYATGECGRVGTPKRREIGHGRLAKRALVAALPSPEE 420
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCGGCLAL+DAG P+ HVAGIAMGLIKDG + +L+D
Sbjct: 421 FGYTMRVVSEITESNGSSSMASVCGGCLALMDAGAPMKAHVAGIAMGLIKDGNRFAVLTD 480
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +A++G +IL M
Sbjct: 481 ILGDEDHLGDMDFKVAGTDRGITALQMDIKILGITKEIMQVALSQAREGRMHILGIMHEA 540
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
VP + E+S +APR+ITIKI+P KIRDVIGKGG+ IR LTEETGT IDI ++G + IA
Sbjct: 541 VPHARQEMSAYAPRIITIKINPEKIRDVIGKGGAVIRALTEETGTTIDITEDGTVNIACL 600
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S +G AKRRIE+LT V++G+ Y G V+++ DFGAI+ +L GKDGLLHISQI+ +RVN
Sbjct: 601 SSEAGDLAKRRIEELTAEVEVGRTYEGKVIKMLDFGAIVSVLPGKDGLLHISQIAHERVN 660
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E Q V+VKVL D++GR++LSM
Sbjct: 661 AVSDHLSEGQVVKVKVLEADEKGRLRLSM 689
>gi|411001077|gb|AFV98805.1| acyl CoA thioester hydrolase [Candidatus Snodgrassella sp.
TA7_36335]
Length = 707
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/692 (58%), Positives = 525/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK IK+F+YG+ +++E GEIARQA +V +S+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHIKTFQYGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ N+IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL ++ +PF GP+G A+VGY++G+Y+LNPT QL +S LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKNQLAQSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTEKA++ VESE+ L E+ +L A++FGHE+M+ AI AINE V + +W V D+
Sbjct: 181 GTEKAVLMVESEADVLSEETMLGAVVFGHEQMQAAIRAINEFADEVNPEMWDWQAPVADE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+LI+K+ ++ I +A++IK KQ R + ++LI E T+ N I I D
Sbjct: 241 SLIAKVRELAGATIDEAFKIKQKQARTAKLDEAWAAVEAALITEETDTLLANQIRGIFKD 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R QIL+ RID R +RPI+IRTG+LPRTHGS+LFTRG+TQ+L ATLGT
Sbjct: 301 LEKEVVRGQILEGQPRIDGRDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLGTQ 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPDVE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVC GCL+LL+AGVP+ HVAGIAMGLI DG K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ IL +M+
Sbjct: 481 DILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQMQ- 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E K ELS APRL T+KI KIRDVIGKGG TIR LT ETGT+I+I ++G ITIA+
Sbjct: 540 EAVKGPQELSAHAPRLFTMKIHQDKIRDVIGKGGETIRALTAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
S +G+ AKRRIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQIS
Sbjct: 600 STSEAGEAAKRRIEEITAEVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQISHD 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q+V+VK L IDDRGR++LS+
Sbjct: 660 RVKNVSDYLQIGQQVKVKALEIDDRGRVRLSI 691
>gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
23834]
gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
23834]
Length = 701
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/692 (57%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +KSF+YG + ++IE GEIARQA +V VS+ +TV+L V + K+ + +FFPLT
Sbjct: 1 MFNKHVKSFQYGQHTVTIETGEIARQAAGAVKVSMGETVVLVAVTANKEVKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY++G+Y+LNPT QL KS LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYLNGEYVLNPTKTQLAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT +A++ VESE++ LPED++L A+++GH +M+ I AINEL V + +W D
Sbjct: 181 GTAQAVLMVESEAQILPEDVMLGAVVYGHNEMQAVIRAINELADAVNPEVWDWKAPETDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ + +A++I+ KQ R + ++LI + T+ N I I
Sbjct: 241 ALVAKVQEIAGQTVAEAFKIRQKQARTAKLDEAWAAVEAALITEDTDTLAANQIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL RID R +RPI+I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 LEANVVRSQILAGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQ 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG+ GR+G PKRREIGHGRLAKRALL VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGECGRMGAPKRREIGHGRLAKRALLGVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +ILE+MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS+ APRL T+KI+ KIRDVIGKGG TIR LT ETGT+I+I D+G ITIA+
Sbjct: 541 AVAGPQ-ELSQHAPRLFTMKINQDKIRDVIGKGGETIRALTAETGTEINIEDDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
N + + A++RIE++T V++G+VY G+V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 VNVEAVEAARKRIEEITAEVEVGQVYNGVVIKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q VRVK L +DDRGR++LSM
Sbjct: 660 RVKDVNDYLRVGQNVRVKALEVDDRGRVRLSM 691
>gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella
capsiferriformans ES-2]
gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella
capsiferriformans ES-2]
Length = 701
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/684 (59%), Positives = 532/684 (77%), Gaps = 4/684 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
K+ +G ++++IE GEIARQA+ +VLVS++DTV+L TVV KD +FFPLTVDY EK
Sbjct: 6 KTIAFGKHQLTIETGEIARQASGAVLVSLDDTVVLVTVVGRKDAKPEQDFFPLTVDYQEK 65
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YAAG+IPGSFFKREG+ SE+E + SRLIDRP+RPLFPE + NE+QI+ V+S + +ID
Sbjct: 66 TYAAGKIPGSFFKREGRASEKEILTSRLIDRPLRPLFPESFYNEVQIIATVMSSDSEIDS 125
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI S+IG S AL+IS +PF GP+ A+VGY +G+Y+LNPT +L S +DL+VAGT++A+
Sbjct: 126 DIPSLIGASAALAISGIPFEGPIAAARVGYANGQYLLNPTKTELVTSQMDLVVAGTDRAV 185
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
+ VESE++QL E+++L A++FGHE+ +I INAINE+ + VG+ +W P K++ LI++I
Sbjct: 186 LMVESEAQQLSEEVMLGAVMFGHEQFQIVINAINEMAEAVGKPMWDWTPPAKNEALIAQI 245
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKII 369
++E +++ AY I++KQ R I + +S+ + ++ N +N + LE+KI+
Sbjct: 246 AELAEAELQAAYAIRSKQERTDAISAIHSKVLASVSPD----LEKNAVNELFGALEAKIV 301
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R QIL RID R +R I+IR G+L RTHGS+LFTRG+TQA+VVATLG+ RD QK+
Sbjct: 302 RGQILSGEPRIDGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQKV 361
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DAL GEFTD FMLHYN PPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP+ F Y++
Sbjct: 362 DALQGEFTDRFMLHYNFPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPSEEDFGYAV 421
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R+VSEITESNGSSSMASVCGGCL++LDAGVP+ HVAGIAMGLIK+G + +LSDILGDE
Sbjct: 422 RIVSEITESNGSSSMASVCGGCLSMLDAGVPLKAHVAGIAMGLIKEGNRFAVLSDILGDE 481
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAG+ NGITALQMDIKI GIT +I+Q AL +AK+G +IL MK + +
Sbjct: 482 DHLGDMDFKVAGSENGITALQMDIKINGITREIMQAALSQAKEGRLHILGIMKESMSGVR 541
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
+ELS+FAPR+I +KI+P KIRDVIGKGG+ IR LTEETGT IDI+D G ITI+S N +G
Sbjct: 542 SELSEFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDAGNITISSVNGEAG 601
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AK+RIE + V++GK+Y G V++L DFGA+I IL GKDGLLHISQI+ +RVN + D+
Sbjct: 602 ELAKKRIEDIAMDVEVGKIYEGPVVKLLDFGALINILPGKDGLLHISQIAHERVNSVGDY 661
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
LKE Q VRVK+L +DDRGR+KLSM
Sbjct: 662 LKEGQVVRVKLLEMDDRGRMKLSM 685
>gi|421562983|ref|ZP_16008805.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2795]
gi|421906555|ref|ZP_16336448.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha704]
gi|393292303|emb|CCI72388.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha704]
gi|402341690|gb|EJU76863.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2795]
Length = 706
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/692 (57%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|411001050|gb|AFV98779.1| polyribonucleotide nucleotidyltransferase [Candidatus Snodgrassella
sp. TA1_30860]
Length = 728
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/694 (57%), Positives = 526/694 (75%), Gaps = 3/694 (0%)
Query: 62 NFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFP 121
N +F+K IK+F+YG+ +++E GEIARQA +V +S+ DTV+L V + K+ +FFP
Sbjct: 20 NNMFDKHIKTFQYGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFP 79
Query: 122 LTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVL 181
LTVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ N+IQIV V+
Sbjct: 80 LTVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVV 139
Query: 182 SVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLL 241
SV+P+ID DI +++G S AL ++ +PF GP+G A+VGY++G+Y+LNPT QL +S LDL+
Sbjct: 140 SVDPEIDSDIPAMLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKTQLAQSQLDLV 199
Query: 242 VAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVK 301
VAGTEKA++ VESE+ L E+ +L A++FGHE+M+ AI AINE V + +W V
Sbjct: 200 VAGTEKAVLMVESEADVLSEETMLGAVVFGHEQMQAAIRAINEFADEVNPEMWDWQAPVA 259
Query: 302 DKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCIL 361
D++LI+K+ ++ I +A++IK KQ R + ++LI E T+ N I I
Sbjct: 260 DESLIAKVRELAGATIDEAFKIKQKQARTAKLDEAWAAVEAALITEETDTLLANQIRGIF 319
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
DLE +++R QIL+ RID R +RPI+IRTG+LPRTHGS+LFTRG+TQ+L ATLG
Sbjct: 320 KDLEKEVVRGQILEGQPRIDGRDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLG 379
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP+
Sbjct: 380 TQRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPD 439
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
F+Y++R+VSEITESNGSSSMASVC GCL+LL+AGVP+ HVAGIAMGLI DG K +
Sbjct: 440 VEDFSYTMRVVSEITESNGSSSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGNKFAV 499
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ IL +M
Sbjct: 500 LTDILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQM 559
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ E K ELS APRL T+KI KIRDVIGKGG TIR LT ETGT+I+I ++G ITI
Sbjct: 560 Q-EAVKGPQELSAHAPRLFTMKIHQDKIRDVIGKGGETIRALTAETGTEINIAEDGTITI 618
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQIS 719
A+ S +G+ AKRRIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQIS
Sbjct: 619 AASTSEAGEAAKRRIEEITAEVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQIS 678
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q+V+VK L IDDRGR++LS+
Sbjct: 679 HDRVKNVSDYLQIGQQVKVKALEIDDRGRVRLSI 712
>gi|385339734|ref|YP_005893606.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
G2136]
gi|416205686|ref|ZP_11620634.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
961-5945]
gi|433466908|ref|ZP_20424365.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
87255]
gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
961-5945]
gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
G2136]
gi|432203484|gb|ELK59535.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
87255]
Length = 706
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/692 (57%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|421539937|ref|ZP_15986090.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93004]
gi|402320221|gb|EJU55712.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93004]
Length = 706
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|421567203|ref|ZP_16012939.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3001]
gi|402344214|gb|EJU79355.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3001]
Length = 706
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNLEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 701
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 529/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K IK+F+YG + +++E GEIARQA ++V VS+ DTV+L V + K+ + +FFPLT
Sbjct: 1 MFDKHIKTFQYGKHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTADKEVKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S+
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY DG Y+LNPT +L+KS LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYADGAYLLNPTKSELEKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE++ LPED++L A+++GHE+M+ I AINEL V + +W ++
Sbjct: 181 GTAKAVLMVESEAQILPEDVMLGAVVYGHEQMQAVIAAINELADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I +A++I++KQ R + ++LI+ + T+ N+I I
Sbjct: 241 ELVAKVREIAGATIAEAFKIRSKQARSAKIAEAWSAVEAALINEDTDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RPI+I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIAVLPEPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ YIL +MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLYILAQMK- 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E ELS+ APRL T+KI+P KIR+VIGKGG TIR +T ETGT+I+I D+G +TIA+
Sbjct: 540 EAVDGPQELSQHAPRLYTMKINPDKIREVIGKGGETIRAITAETGTEINIEDDGTVTIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
S +G+ A++RIE++T V++GK+Y G V+++ D GAI+ ++ GKDGL+HIS+I+ +
Sbjct: 600 TTSEAGEAARKRIEEITAEVEVGKIYEGTVVKILDNNVGAIVTVMPGKDGLVHISEIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LSM
Sbjct: 660 RVKNVGDYLQVGQTVNVKALAVDDRGRVRLSM 691
>gi|325982016|ref|YP_004294418.1| polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
gi|325531535|gb|ADZ26256.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. AL212]
Length = 709
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/690 (59%), Positives = 530/690 (76%), Gaps = 2/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I KS YG +++++E GEIARQA +V+V+++DTV+L TVV K+ +FFPLTV
Sbjct: 1 MKSIKKSITYGRHQLTLETGEIARQAHGAVVVTMDDTVVLVTVVGAKNIKPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E++YAAGRIPGSFFKREG+PSE+ET+ SRLIDRPIRPLFPEG+ NE+QIV V+S +
Sbjct: 61 DYQERSYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSAD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
+IDPDI SIIG S AL++S +PF GPLG A+VGYI+ +Y+LNPTT +LK + L+L+VAG
Sbjct: 121 NEIDPDIPSIIGTSAALTLSGIPFDGPLGAARVGYINNEYVLNPTTSELKDTQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ +L E+++L A+ +GHE+M+I I+AINE G +W P KD
Sbjct: 181 TQHAVLMVESEAIELSEEVMLGAVTYGHEQMQIVIDAINEFADEAGVTAWDWTPPAKDSA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYD 363
KI ++E +R+AY+IK KQ R K + I + L + EN ++ +
Sbjct: 241 FEEKIAMMAEADLRQAYKIKQKQTRSEAIKTTRERISNELGVGTEN-GPELQAFMEAFFS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R QILD RID RG +R I+IR G+LPRTHGS+LFTRG+TQAL +ATLGT+
Sbjct: 300 LESKIVRNQILDGEPRIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAIATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQKID+L G++ + F+LHYNMPP+ATG+IGR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 360 RDEQKIDSLQGDYNERFILHYNMPPYATGEIGRVGTPKRREIGHGRLAKRALVAVLPPPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F YS+R+VSEITESNGSSSMASVC GCLAL+DAGVP+ HVAGIAMGLIKDG + +L+
Sbjct: 420 EFGYSLRVVSEITESNGSSSMASVCSGCLALMDAGVPLKAHVAGIAMGLIKDGNRFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+ AL +A +G +IL+ MK
Sbjct: 480 DILGDEDHLGDMDFKVAGTEKGITALQMDIKIQGITKEIMHAALIQAHEGRMHILQIMKQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+P + ++S APR+I +KI+P KIRDVIGKGG+ IR LTEETGT IDI D+G +TIA
Sbjct: 540 ALPSTREDISIHAPRIIKLKINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGQVTIAC 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ G+ AK+RIE +T V++GK+Y G+VL+L DFGAI+ +L GKDGLLHISQI+++RV
Sbjct: 600 VSAEGGELAKKRIEDITAEVEVGKIYDGVVLKLLDFGAIVSVLPGKDGLLHISQIANERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D L E Q+VRVKVL DD+GR++LSM
Sbjct: 660 NNVSDHLNEGQQVRVKVLEADDKGRLRLSM 689
>gi|254804638|ref|YP_003082859.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
alpha14]
gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha14]
Length = 706
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 529/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQTRSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|350571866|ref|ZP_08940182.1| polyribonucleotide nucleotidyltransferase [Neisseria wadsworthii
9715]
gi|349791051|gb|EGZ44944.1| polyribonucleotide nucleotidyltransferase [Neisseria wadsworthii
9715]
Length = 709
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/692 (57%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +KSF+YG+ +++E GE+ARQA ++V VS+ DTV+L V + KD +FFPLT
Sbjct: 1 MFNKHVKSFQYGNQTVTLETGEVARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S+
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY DG+Y+LNPT +L+ S +DL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYADGQYLLNPTKTELETSQMDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE++ LPED++L A+++GHE+M++ I+AINE V + +W D
Sbjct: 181 GTAKAVLMVESEAQVLPEDVMLGAVVYGHEQMQVVIDAINEFADEVNPEVWDWKAPEADT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++KI I+ I +A++I+ KQ R + SLI E T+ N I I
Sbjct: 241 ELVAKIREIAGGTIGEAFKIRQKQARTAKLDEAWNAVKESLITEETDTLIANQIKGIFKQ 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RPI+I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 361 RDEQIIDALNGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALVAVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL +MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARMHILAQMK- 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E ELS+ APRL T+KI+P KIRDVIGKGG TIR +T ETGT+I+I+D+G +TIA+
Sbjct: 540 EAVDGPQELSQHAPRLFTMKINPDKIRDVIGKGGETIRAITAETGTEINIDDDGTVTIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G+ AKRRIE++T V++GKVY G VL++ + GAI+ +L GKDGL+H+SQI+ +
Sbjct: 600 VAGEAGEAAKRRIEEITAEVEVGKVYEGTVLKILENNVGAIVSVLPGKDGLVHVSQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RVN + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVNNVADYLKVGQTVNVKALEVDDRGRVRLSI 691
>gi|421565103|ref|ZP_16010889.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3081]
gi|433536445|ref|ZP_20492953.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
77221]
gi|402345432|gb|EJU80549.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3081]
gi|432274395|gb|ELL29483.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
77221]
Length = 706
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|385853552|ref|YP_005900066.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
gi|421554520|ref|ZP_16000461.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98008]
gi|427828474|ref|ZP_18995490.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
gi|402332480|gb|EJU67805.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98008]
Length = 706
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|340361931|ref|ZP_08684338.1| polyribonucleotide nucleotidyltransferase [Neisseria macacae ATCC
33926]
gi|339888028|gb|EGQ77523.1| polyribonucleotide nucleotidyltransferase [Neisseria macacae ATCC
33926]
Length = 706
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRTQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +ILE+MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|385342239|ref|YP_005896110.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240149]
gi|385856914|ref|YP_005903426.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NZ-05/33]
gi|416188235|ref|ZP_11614704.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M0579]
gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M0579]
gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240149]
gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NZ-05/33]
Length = 706
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|421537710|ref|ZP_15983893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93003]
gi|402318377|gb|EJU53900.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93003]
Length = 706
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/692 (57%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M+ AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|421544131|ref|ZP_15990209.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM140]
gi|421546241|ref|ZP_15992290.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM183]
gi|421548510|ref|ZP_15994535.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2781]
gi|421552535|ref|ZP_15998509.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM576]
gi|421560934|ref|ZP_16006787.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2657]
gi|433464740|ref|ZP_20422225.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM422]
gi|433490108|ref|ZP_20447238.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM418]
gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha153]
gi|402323976|gb|EJU59414.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM183]
gi|402324243|gb|EJU59679.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM140]
gi|402326171|gb|EJU61576.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2781]
gi|402331167|gb|EJU66508.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM576]
gi|402339414|gb|EJU74630.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2657]
gi|432204227|gb|ELK60272.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM422]
gi|432228683|gb|ELK84381.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM418]
Length = 706
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 529/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|416172731|ref|ZP_11608808.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
OX99.30304]
gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
OX99.30304]
Length = 706
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|421550310|ref|ZP_15996315.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69166]
gi|433471211|ref|ZP_20428602.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
68094]
gi|433477245|ref|ZP_20434568.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70012]
gi|433525893|ref|ZP_20482527.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69096]
gi|433538637|ref|ZP_20495117.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70030]
gi|402330525|gb|EJU65872.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69166]
gi|432209700|gb|ELK65667.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
68094]
gi|432216467|gb|ELK72348.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70012]
gi|432262084|gb|ELL17329.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69096]
gi|432274645|gb|ELL29732.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70030]
Length = 706
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
053442]
gi|418287979|ref|ZP_12900504.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM233]
gi|418290239|ref|ZP_12902408.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM220]
gi|421556983|ref|ZP_16002892.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
80179]
gi|189037311|sp|A9M3J0.1|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
053442]
gi|372201926|gb|EHP15797.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM220]
gi|372202788|gb|EHP16558.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM233]
gi|402335668|gb|EJU70932.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
80179]
Length = 706
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M+ AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
014 str. F0314]
gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
014 str. F0314]
Length = 705
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL+ RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +ILE+MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIRDVIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE +T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEAITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|345874270|ref|ZP_08826084.1| polyribonucleotide nucleotidyltransferase [Neisseria weaveri LMG
5135]
gi|343970543|gb|EGV38716.1| polyribonucleotide nucleotidyltransferase [Neisseria weaveri LMG
5135]
Length = 726
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/694 (57%), Positives = 526/694 (75%), Gaps = 3/694 (0%)
Query: 62 NFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFP 121
N +FNK +KSF+YG + +++E GEIARQA ++V VS+ DTV+L V + KD +FFP
Sbjct: 16 NEMFNKHVKSFQYGEHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFP 75
Query: 122 LTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVL 181
LTVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+
Sbjct: 76 LTVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVV 135
Query: 182 SVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLL 241
SV+P+ID DI ++IG S AL +S +PF GP+G A+VGY++G Y+LNP L++S LDL+
Sbjct: 136 SVDPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNGNYVLNPNKSVLEQSQLDLV 195
Query: 242 VAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVK 301
VAGT KA++ VESE++ LPEDI+L A+++GHE+M+ INAINE V + +W
Sbjct: 196 VAGTAKAVLMVESEAQVLPEDIMLGAVVYGHEQMQAVINAINEFADAVNPEVWDWKAPET 255
Query: 302 DKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCIL 361
++ L++K+ IS I +A++I+ KQ R + +LI E T+ N+I I
Sbjct: 256 NEELVAKVREISGATIAEAFKIRQKQARSAKLDEAWAAVKDALITEETDTLTANEIKGIF 315
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE+ ++R QILD RID R +RPI+I+TG+LPRTHGS+LFTRG+TQAL VATLG
Sbjct: 316 KQLEADVVRGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLG 375
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 376 TQRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALVAVLPS 435
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +
Sbjct: 436 PEEFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAV 495
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL +M
Sbjct: 496 LTDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQM 555
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
K E ELS+ APRL T+KI+ KIRDVIGKGG TIR++T +TGT+I+I ++G +TI
Sbjct: 556 K-EAVDGPQELSQHAPRLFTMKINQDKIRDVIGKGGETIRSITADTGTEINIAEDGTVTI 614
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQIS 719
A+ +G AK+RIE++T V++GKVY G VL+L D GAI+ ++ GKDGL+HISQI+
Sbjct: 615 AATTQEAGDAAKKRIEEITAEVEVGKVYDGTVLKLLDNNVGAIVSVIPGKDGLVHISQIA 674
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV ++D+L+ Q V+VK L +DDRGR++LS+
Sbjct: 675 HERVKNVSDYLQVGQNVKVKALEVDDRGRVRLSI 708
>gi|416183846|ref|ZP_11612752.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13399]
gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13399]
Length = 706
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M+ AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLVANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|421558651|ref|ZP_16004529.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
92045]
gi|402337394|gb|EJU72642.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
92045]
Length = 706
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/692 (57%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|416163009|ref|ZP_11606888.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
N1568]
gi|433473162|ref|ZP_20430526.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97021]
gi|433481711|ref|ZP_20438976.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2006087]
gi|433483697|ref|ZP_20440925.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2002038]
gi|433485896|ref|ZP_20443097.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97014]
gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
N1568]
gi|432210763|gb|ELK66719.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97021]
gi|432217542|gb|ELK73410.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2006087]
gi|432221400|gb|ELK77210.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2002038]
gi|432222942|gb|ELK78724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97014]
Length = 706
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase [Neisseria meningitidis Z2491]
gi|385337712|ref|YP_005891585.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
WUE 2594]
gi|433475367|ref|ZP_20432708.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
88050]
gi|433479519|ref|ZP_20436813.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63041]
gi|433515327|ref|ZP_20472099.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2004090]
gi|433517263|ref|ZP_20474012.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
96023]
gi|433519483|ref|ZP_20476204.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
65014]
gi|433523680|ref|ZP_20480345.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97020]
gi|433527872|ref|ZP_20484483.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3652]
gi|433530046|ref|ZP_20486639.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3642]
gi|433532304|ref|ZP_20488870.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2007056]
gi|433534154|ref|ZP_20490699.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2001212]
gi|433540616|ref|ZP_20497071.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63006]
gi|187610303|sp|A1IR09.1|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis Z2491]
gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
WUE 2594]
gi|432211185|gb|ELK67140.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
88050]
gi|432217322|gb|ELK73191.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63041]
gi|432253915|gb|ELL09251.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2004090]
gi|432254272|gb|ELL09607.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
96023]
gi|432255474|gb|ELL10803.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
65014]
gi|432260579|gb|ELL15837.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97020]
gi|432266179|gb|ELL21367.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3652]
gi|432267974|gb|ELL23146.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3642]
gi|432268249|gb|ELL23420.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2007056]
gi|432272664|gb|ELL27771.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2001212]
gi|432277631|gb|ELL32677.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63006]
Length = 706
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|433513116|ref|ZP_20469910.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63049]
gi|432248793|gb|ELL04217.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63049]
Length = 706
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPK 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|385854904|ref|YP_005901417.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240355]
gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240355]
Length = 706
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase [Neisseria gonorrhoeae NCCP11945]
gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
DGI18]
gi|385335256|ref|YP_005889203.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
TCDC-NG08107]
gi|226702668|sp|B4RK29.1|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
NCCP11945]
gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 706
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 524/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+ V + K+ +FFPL
Sbjct: 1 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKR 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI KIRDVIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|421542166|ref|ZP_15988276.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM255]
gi|402318102|gb|EJU53627.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM255]
Length = 706
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
1291]
gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
MS11]
gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID1]
gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-92-679]
gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
1291]
gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
MS11]
gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID1]
gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-92-679]
Length = 707
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/693 (56%), Positives = 525/693 (75%), Gaps = 3/693 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+ V + K+ +FFPL
Sbjct: 1 MMFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 AVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
V+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+V
Sbjct: 121 VDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W +
Sbjct: 181 AGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 EELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 HLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 SRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKP 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L
Sbjct: 421 EDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
V + ELS APRL T+KI KIRDVIGKGG TIR++T ETGT+I+I ++G ITIA
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISS 720
+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 600 ATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAH 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 ERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 692
>gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
25996]
gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
25996]
Length = 706
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G STAL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASTALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K L ED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILSEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKGALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL+ RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +ILE+MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIRDVIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|433500549|ref|ZP_20457535.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM174]
gi|432235840|gb|ELK91449.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM174]
Length = 706
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+ V + K+ +FFPL
Sbjct: 1 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRRIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKR 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
Length = 706
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ ++ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGVAGETIKEAFKIRQKQERSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|419796729|ref|ZP_14322252.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca VK64]
gi|385699197|gb|EIG29511.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca VK64]
Length = 706
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPEANE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL+ RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +ILE+MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase [Neisseria gonorrhoeae FA 1090]
gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID24-1]
gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
35/02]
gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
FA19]
gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID18]
gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-93-1035]
gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
DGI2]
gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
F62]
gi|75356328|sp|Q5F9Q7.1|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
gonorrhoeae FA 1090]
gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
35/02]
gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
FA19]
gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID18]
gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-93-1035]
gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
DGI2]
gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
F62]
Length = 707
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/693 (56%), Positives = 524/693 (75%), Gaps = 3/693 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+ V + K+ +FFPL
Sbjct: 1 MMFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 AVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
V+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+V
Sbjct: 121 VDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W +
Sbjct: 181 AGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 EELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 RLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 SRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKP 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L
Sbjct: 421 EDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
V ELS APRL T+KI KIRDVIGKGG TIR++T ETGT+I+I ++G ITIA
Sbjct: 541 AAV-AGPQELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISS 720
+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 600 ATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAH 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 ERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 692
>gi|422111361|ref|ZP_16380985.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 706
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M+ AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +L+ E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
29256]
gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
29256]
Length = 706
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL+ RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +ILE+MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|349610167|ref|ZP_08889525.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. GT4A_CT1]
gi|348610468|gb|EGY60158.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. GT4A_CT1]
Length = 706
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGEAIKEAFKIRQKQARSAKLDEAWNAVKDALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL+ RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRTQILEGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +ILE+MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|385328094|ref|YP_005882397.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis alpha710]
gi|416178664|ref|ZP_11610692.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M6190]
gi|416192671|ref|ZP_11616777.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ES14902]
gi|433492260|ref|ZP_20449354.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM586]
gi|433494337|ref|ZP_20451407.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM762]
gi|433496521|ref|ZP_20453562.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7089]
gi|433498581|ref|ZP_20455590.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7124]
gi|433502732|ref|ZP_20459697.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM126]
gi|187610328|sp|A1KT19.2|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis alpha710]
gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M6190]
gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ES14902]
gi|432229049|gb|ELK84742.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM586]
gi|432231011|gb|ELK86681.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM762]
gi|432234415|gb|ELK90035.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7124]
gi|432235221|gb|ELK90837.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7089]
gi|432240828|gb|ELK96359.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM126]
Length = 706
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|385324486|ref|YP_005878925.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
8013]
gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
8013]
Length = 706
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRAITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|385851577|ref|YP_005898092.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M04-240196]
gi|416213951|ref|ZP_11622644.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240013]
gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240013]
gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M04-240196]
Length = 706
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|433468915|ref|ZP_20426344.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98080]
gi|432205308|gb|ELK61338.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98080]
Length = 706
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 528/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ ++ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGVAGETIKEAFKIRQKQERSAKVDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLKVGQVVNVKALEVDDRGRVRLSI 691
>gi|381401149|ref|ZP_09926065.1| polynucleotide phosphorylase/polyadenylase [Kingella kingae
PYKK081]
gi|380833867|gb|EIC13719.1| polynucleotide phosphorylase/polyadenylase [Kingella kingae
PYKK081]
Length = 708
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/692 (57%), Positives = 523/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK IKSF+YG +++E GEIARQA ++V VS+ DTV+L V + KD +FFPLT
Sbjct: 1 MFNKHIKSFQYGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 VDYFERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY++ Y+LNPT +QL +S LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSRSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ LPED++L A++FGHE+M+ I AINEL Q V + +W +
Sbjct: 181 GTEQAVLMVESEADILPEDVMLGAVVFGHEQMQTVITAINELAQEVNPEVWDWKAPEANT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ IS I +A++I+ KQ R + + LI E T+ N+I I +
Sbjct: 241 DLIAKVKEISGDLIAEAFKIRQKQARSAKLDEAWAAVEAVLITEETDTLAKNEIKGIFKN 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL RID R +RP++I+T ILPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEAAVVRGQILAGQPRIDGRDTRTVRPLNIQTNILPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL +M+T
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILAQMQT 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS+ APRL T+KI+P KIR+VIGKGG TIR++T ETGT+I+I D+G++TIA+
Sbjct: 541 AV-AGPQELSQHAPRLYTMKINPDKIREVIGKGGETIRSITAETGTEINIADDGVVTIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+ +G+ AK RIE +T V++GKVY G V++L D GAI+ I+ GKDGL+HISQI+ +
Sbjct: 600 TIAEAGEAAKARIEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHISQITHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LSM
Sbjct: 660 RVKNVSDYLQVGQTVSVKALEVDDRGRVRLSM 691
>gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
FA6140]
Length = 706
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/692 (57%), Positives = 525/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+ V + K+ +FFPL
Sbjct: 1 MFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLA 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERNYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKR 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI KIRDVIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
23970]
gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
23970]
Length = 707
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/693 (56%), Positives = 527/693 (76%), Gaps = 3/693 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F+K +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPL
Sbjct: 1 MMFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 TVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
V+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+V
Sbjct: 121 VDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT KA++ VESE+K LPED++L A+++GH++M+ AINAINE V + +W +
Sbjct: 181 AGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L++K+ I+ I++A++I+ KQ R + +L+ E T+ N+I I
Sbjct: 241 EELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 HLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 SRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKP 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L
Sbjct: 421 EDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISS 720
+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 600 ATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAH 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 ERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 692
>gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID332]
gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID332]
Length = 707
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/693 (56%), Positives = 523/693 (75%), Gaps = 3/693 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+ V + K+ +FFPL
Sbjct: 1 MMFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 AVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
V+P+ID DI +++G S AL +S +PF GP+G A+VGYI+G Y+LNPT +L KS LDL+V
Sbjct: 121 VDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W +
Sbjct: 181 AGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L++K+ I I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 EELVAKVRGIVGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 HLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 SRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKP 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L
Sbjct: 421 EDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
V ELS APRL T+KI KIRDVIGKGG TIR++T ETGT+I+I ++G ITIA
Sbjct: 541 AAV-AGPQELSAHAPRLFTMKISQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISS 720
+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 600 ATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAH 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 ERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 692
>gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica
020-06]
gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
lactamica 020-06]
Length = 706
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M+ AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +L+ E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALLTEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase [Neisseria meningitidis MC58]
gi|81784821|sp|Q9K062.1|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
MC58]
Length = 707
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/693 (56%), Positives = 526/693 (75%), Gaps = 3/693 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F+K +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPL
Sbjct: 1 MMFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 TVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
V+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+V
Sbjct: 121 VDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W +
Sbjct: 181 AGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 EELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 HLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 SRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKP 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L
Sbjct: 421 EDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
V ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA
Sbjct: 541 AAV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISS 720
+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 600 ATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAH 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 ERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 692
>gi|349574284|ref|ZP_08886238.1| polyribonucleotide nucleotidyltransferase [Neisseria shayeganii
871]
gi|348014067|gb|EGY52957.1| polyribonucleotide nucleotidyltransferase [Neisseria shayeganii
871]
Length = 702
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/692 (57%), Positives = 521/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K K+F+YG+ +SIE GEIARQA +V VS+ DTV+L V + KD +FFPLT
Sbjct: 1 MFAKHTKTFQYGNQTVSIETGEIARQAAGAVKVSMGDTVVLVAVTANKDVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFP G+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPAGFYHDIQIVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY++G+Y+LNP+ QL++S LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYLNGEYVLNPSKTQLQQSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+KA++ VESE+++LPE ++L A+++GHE+M+ I AINEL V + +W P D
Sbjct: 181 GTQKAVLMVESEAQELPESVMLGAVVYGHEQMQAVIRAINELADEVNPEVWDWQPAETDN 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ KI I+ I +A+ I+ KQ R + +LI E T+ N I I
Sbjct: 241 ALVEKIREIAGATIGEAFNIRQKQARSAKLDEAWAAVKEALITEETDTLVANQIKGIFKQ 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RPI+I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 LEADVVRGQILDGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQ 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIAVLPSPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +L+
Sbjct: 421 EFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL +MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQMK- 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E ELS APRL T+KI+ KIRDVIGKGG TIR +T ETGT+I+I ++G ITIA+
Sbjct: 540 EAVDGPQELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITSETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
++ +G+ A++RIE++T V++GKVY G VL++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TSTEAGEAARQRIEQITAEVEVGKVYEGTVLKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +DDRGR++LS+
Sbjct: 660 RVKDVNDYLKVGQTVNVKALEVDDRGRVRLSI 691
>gi|416197416|ref|ZP_11618626.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
CU385]
gi|433487991|ref|ZP_20445159.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13255]
gi|433504716|ref|ZP_20461656.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9506]
gi|433506779|ref|ZP_20463691.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9757]
gi|433509087|ref|ZP_20465960.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
12888]
gi|433511024|ref|ZP_20467856.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
4119]
gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
CU385]
gi|389606162|emb|CCA45075.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha522]
gi|432224457|gb|ELK80222.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13255]
gi|432242231|gb|ELK97755.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9506]
gi|432242568|gb|ELK98086.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9757]
gi|432247901|gb|ELL03336.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
12888]
gi|432248515|gb|ELL03940.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
4119]
Length = 706
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPELWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
Length = 706
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 525/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHAKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+ L E+++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +ILE+MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIRDVIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|433521584|ref|ZP_20478279.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
61103]
gi|432260357|gb|ELL15616.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
61103]
Length = 706
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEVNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava
NJ9703]
gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava
NJ9703]
Length = 707
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/693 (56%), Positives = 526/693 (75%), Gaps = 3/693 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPL
Sbjct: 1 MMFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 TVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
V+P+ID DI +++G S AL +S +PF GP+G A+VGY++G YILNPT +L KS LDL+V
Sbjct: 121 VDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYILNPTKAELAKSQLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT KA++ VESE+ L E+++L A+++GH++M++AINAINE V + +W +
Sbjct: 181 AGTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 EELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 HLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 SRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEP 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L
Sbjct: 421 EDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
V + ELS APRL T+KI+ KIRDVIGKGG TIR++T ETGT+I+I ++G ITIA
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISS 720
+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 600 ATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAH 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 ERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 692
>gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
SK114]
gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
SK114]
Length = 706
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+ L E+++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS APRL T+KI+ KIRDVIGKGG TIR++T ETGT+I+I ++G ITIA+
Sbjct: 541 AVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 RVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 691
>gi|226940843|ref|YP_002795917.1| polynucleotide phosphorylase/polyadenylase [Laribacter
hongkongensis HLHK9]
gi|254782724|sp|C1D8W8.1|PNP_LARHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226715770|gb|ACO74908.1| Pnp [Laribacter hongkongensis HLHK9]
Length = 701
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 524/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK K+F+YG + + +E GEIARQA+ SVLVS++DTV+L V KD +FFPLT
Sbjct: 1 MFNKFSKTFQYGRHTVKLETGEIARQASGSVLVSMDDTVVLVAVTVNKDVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY E+ YAAG+IPG FFKREGK SE+E + RLIDRPIRPLFP G+ +++Q+V V+S+
Sbjct: 61 VDYYERTYAAGKIPGGFFKREGKQSEKEILTCRLIDRPIRPLFPAGFYHDVQVVATVMSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP++D DI ++IG S A+ ++ +PF+GP+G A+VGY +G+YILNPT +L S LDL+VA
Sbjct: 121 NPEVDADIPAMIGASAAMVLAGVPFMGPIGAARVGYANGEYILNPTKTELTTSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++QLPE ++L A+++GHE+M+ AI AINEL V W P +D
Sbjct: 181 GTESAVLMVESEAQQLPEAVMLGAVVYGHEQMQAAIKAINELADEVNPVIFEWAPAAEDT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++++ ++E + A++I+ KQ R + ++LI E T+ N I + +
Sbjct: 241 ELVAQVKALAEADVAAAFKIRQKQARSQALGEAWSKVKAALITEETETLRANHIKSLFKE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL RID R +RPI+IRTG+LPR HGS LFTRG+TQALV TLGT
Sbjct: 301 LEANVVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRAHGSVLFTRGETQALVSTTLGTK 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
+DEQ IDAL GE+TD FMLHYN PP++TG+ GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 361 QDEQIIDALAGEYTDRFMLHYNFPPYSTGETGRMGPPKRREIGHGRLAKRALIAVLPKQE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+YS+R+VSEITESNGSSSMASVCGGCL+L++AGVP+S HVAGIAMGLI + + +L+
Sbjct: 421 DFSYSMRVVSEITESNGSSSMASVCGGCLSLMNAGVPLSAHVAGIAMGLILEDNRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +AK+G +IL MK+
Sbjct: 481 DILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALDQAKEGRLHILGIMKS 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ ELS APRL T++I+P KIRDVIGKGGS IR LTEETGT IDI ++G+ITIAS
Sbjct: 541 AI-DAPQELSTHAPRLYTLRINPDKIRDVIGKGGSVIRALTEETGTSIDIAEDGLITIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
++ +EAKRRIE++T V+IGK+Y G V+++ D GAI++I+ G+DGL+HISQI+++
Sbjct: 600 VSAEGAEEAKRRIEEITAEVEIGKIYEGTVVKILDKNVGAIVQIMPGRDGLVHISQIANE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
R+ + D L+E Q+VRVKVL D+RGRI+LS+
Sbjct: 660 RIANVADHLQEGQQVRVKVLETDERGRIRLSI 691
>gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
14685]
gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
14685]
Length = 707
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/693 (56%), Positives = 526/693 (75%), Gaps = 3/693 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPL
Sbjct: 1 MMFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 TVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
V+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+V
Sbjct: 121 VDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT KA++ VESE+ L E+++L A+++GH++M++AINAINE V + +W +
Sbjct: 181 AGTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 EELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 HLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 SRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKP 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI D K +L
Sbjct: 421 EDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
V + ELS APRL T+KI+ KIRDVIGKGG TIR++T ETGT+I+I ++G ITIA
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIRDVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISS 720
+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 600 ATTQEAGDAAKKRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAH 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV ++D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 ERVRNVSDYLQVGQVVNVKALEVDDRGRVRLSI 692
>gi|438000156|ref|YP_007183889.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813088|ref|YP_007449541.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339390|gb|AFZ83812.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451779057|gb|AGF49937.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 701
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/693 (59%), Positives = 533/693 (76%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +K++IE GEIARQA+ SVLVS+ DTVILATVV+ ++ +FFPLT
Sbjct: 1 MFNKMTKTFQYGQHKVTIETGEIARQASGSVLVSMGDTVILATVVASREVKDGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK+YAAG+IPG FFKREGK SE+E +ISRLIDRP+RPLFP+G+ N++ +VV+VLSV
Sbjct: 61 VDYIEKSYAAGKIPGGFFKREGKSSEKEILISRLIDRPLRPLFPDGFYNDVHVVVHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P IDPDI SIIG + ALS+S +PF GP+G A+VG+IDG Y+LNPT Q+K S LDL+VA
Sbjct: 121 DPDIDPDIPSIIGSAAALSLSGVPFHGPIGAARVGFIDGMYVLNPTKTQIKSSELDLIVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VES + +L ED IL+AI+FGH+ M+I I+ IN+LV G+ + W P VKD
Sbjct: 181 GTVDAVLMVESSANELSEDSILDAIMFGHKNMQIVIDNINDLVSLAGKDSIEWIPAVKDS 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL----IDNENLTIDINDINC 359
+LIS I I+ K+ AY + K+ R L + I + SS+ + + N +I+
Sbjct: 241 SLISYISKIALEKLSLAYSYREKKERHLKLEEIRSFVKSSIRNDYVHSRNTIPGDTEIDG 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+DLESKI+R++IL+ RID R +RPI I+ GILPR HGS+LFTRG+TQALVV
Sbjct: 301 LLFDLESKIVREKILNGEPRIDGRDTRTVRPIDIKLGILPRAHGSALFTRGETQALVVVA 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ I++L E+ D F+ HYNMPPFATG+IGRIGVPKRREIGHG LAKRALL L
Sbjct: 361 LGTKQDEQIIESLNEEYRDRFIFHYNMPPFATGEIGRIGVPKRREIGHGCLAKRALLSSL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP HVAG+AMGLI + K
Sbjct: 421 PDPKEFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPFRNHVAGVAMGLILEDSKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
IL+DILGDED GDMDFKVAGTVNGITALQMDIKI GIT DI++IAL +AK G +IL
Sbjct: 481 AILTDILGDEDHLGDMDFKVAGTVNGITALQMDIKIHGITRDIMKIALDQAKDGRFHILS 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + + ELS F+P++++I+I+P KIRD+IGKGG+TIR +TEET TQIDI+D+G++
Sbjct: 541 KMKDSINSSRAELSSFSPKVLSIRINPEKIRDIIGKGGATIRCITEETSTQIDISDDGLV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TI+ N QEA+ RI +LT V+IG VY G V R+ DFGAI+++ GKDGLLHIS+I+
Sbjct: 601 TISGVNENDVQEAQNRITELTAEVEIGGVYEGKVNRILDFGAIVQLFPGKDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ R+ I + L Q+++VKV+ DD+GR++LS
Sbjct: 661 NHRIQNINEVLSAGQRIKVKVIESDDKGRLRLS 693
>gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
NRL30031/H210]
gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
NRL30031/H210]
Length = 707
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/693 (56%), Positives = 526/693 (75%), Gaps = 3/693 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPL
Sbjct: 1 MMFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 TVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
V+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+V
Sbjct: 121 VDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT KA++ VESE+ L E+++L A+++GH++M++AINAINE V + +W +
Sbjct: 181 AGTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 EELLAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 HLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 SRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKP 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L
Sbjct: 421 EDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISS 720
+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 600 ATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAH 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 ERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 692
>gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
ATCC 43768]
gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
ATCC 43768]
Length = 707
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/693 (56%), Positives = 526/693 (75%), Gaps = 3/693 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+FNK +K+F+YG+ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPL
Sbjct: 1 MMFNKHVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 TVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
V+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+V
Sbjct: 121 VDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT KA++ VESE+ L E+++L A+++GH++M++AINAINE V + +W +
Sbjct: 181 AGTSKAVLMVESEADILSEEVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 EELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNAVKEALITEETDTLAANEIKGIFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 301 HLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 SRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKP 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L
Sbjct: 421 EDFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 TDILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMK 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
V + ELS APRL T+KI+ KIR+VIGKGG TIR++T ETGT+I+I ++G ITIA
Sbjct: 541 AAVAGPQ-ELSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTEINIAEDGTITIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISS 720
+ +G AK+RIE++T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+
Sbjct: 600 ATTQEAGDAAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAH 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV + D+L+ Q V VK L +DDRGR++LS+
Sbjct: 660 ERVRNVGDYLQVGQVVNVKALEVDDRGRVRLSI 692
>gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
Length = 714
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/694 (56%), Positives = 530/694 (76%), Gaps = 4/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F ++F+YG + +++E GEIARQA SV+V+++DTV+LATVV+ K +FFPLT
Sbjct: 1 MFEIHKETFQYGQHTVTLETGEIARQAGGSVIVTVDDTVVLATVVAAKSAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+EK YAAGRIPG FFKREGK +E+ET+ +RLIDRP+RPLFPEG+ NE+Q+ + V+S+
Sbjct: 61 VDYVEKFYAAGRIPGGFFKREGKGTEQETLNARLIDRPLRPLFPEGFFNEVQVTLTVMSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+++PDI +++G S ALSI+ +PF GP+G A+VGYI+ +Y+LNPT QLK S +DL+VA
Sbjct: 121 NPEVNPDIPAMLGASAALSIAGIPFNGPVGGARVGYINDQYVLNPTATQLKDSKMDLIVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ +L E+I+L I+FGHE+M+ AINAI+ L G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAHELSEEIMLGGIMFGHEQMQAAINAIHALTAKAGKPEWDWKPAPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL----IDNENLTIDINDINC 359
L++ + ++ K+ AY++ KQ R K IS ++ + L + + I D+
Sbjct: 241 PLLAAVTELAGEKLAAAYKMTEKQARSQRLKEISAEVAAELPAKLTEEQRAGITNADVGD 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I++ LE+KI+R QIL+ RID R +RPI++RTG+LPR HGS+LFTRG+TQALVV T
Sbjct: 301 IMFGLEAKIVRGQILNGEPRIDGRDTRTVRPITVRTGVLPRAHGSALFTRGETQALVVTT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RDEQ IDA+ GE+ D FM HYNMPP+ATG+ GR+G PKRREIGHGRLA+RA+ +L
Sbjct: 361 LGTGRDEQMIDAVAGEYRDRFMFHYNMPPYATGECGRMGAPKRREIGHGRLARRAVEMML 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F Y++R+VSEITESNGSSSMASVCGG L+L+DAGVP+ + VAGIAMGLIK+ K
Sbjct: 421 PAPEDFQYTMRVVSEITESNGSSSMASVCGGALSLMDAGVPLKQLVAGIAMGLIKEENKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRMHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
MK ELS +APR+IT+KI+P KIRDVIGKGG+TIR +TE+TG IDI ++G I
Sbjct: 541 IMKEATGGNVGELSAYAPRMITMKINPEKIRDVIGKGGATIRGITEQTGASIDIKEDGSI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TIAS + +G+ AK+ IE +T V++G VY G VL+L DFGAI+ +L GKDGLLHISQI+
Sbjct: 601 TIASVDGDAGERAKKLIEDITAEVEVGAVYEGTVLKLLDFGAIVSVLPGKDGLLHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + DFLKE Q V+VKVL D++GR++LSM
Sbjct: 661 NERVNTVGDFLKEGQVVKVKVLEADEKGRLRLSM 694
>gi|451823216|ref|YP_007459490.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776016|gb|AGF47057.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 699
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/693 (57%), Positives = 533/693 (76%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K+IKSFKYG + + +E GEIARQA+ +VL S+ DTV+LATVV K+ S FFPLT
Sbjct: 1 MFKKVIKSFKYGLHDVVLETGEIARQASGAVLASMGDTVVLATVVGNKETKSGQGFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK Y+AGRIPG FFKREGK SE+E + SRLIDRP+RPLFPEG+ NE+QIVV+VLSV
Sbjct: 61 VDYIEKTYSAGRIPGGFFKREGKSSEKEILTSRLIDRPLRPLFPEGFYNEVQIVVHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+IDPDI S+IG S AL+IS +PF GP+G +VGY++ ++I+NPT QL S LDL++A
Sbjct: 121 DPEIDPDIISMIGSSAALAISGIPFKGPIGAIRVGYLEEEFIVNPTKNQLSHSDLDLVLA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VES +K+L E ++L AI FGH++M++ ++ I ELV+ G+ + +W+P D
Sbjct: 181 GTSDAVLMVESTAKELSESLMLEAIAFGHDQMQVVVDNICELVKEAGKPEWDWEPNCHDS 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNIS----KDIYSSLIDNENLTIDINDINC 359
L++ I + +I AY IK KQ R K I + + S +I+N + D ++
Sbjct: 241 NLVNLISDNYYSEISSAYNIKEKQKRSTKLKEIKIRIKEFVCSKVIENNEIISDCV-LDD 299
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I++++ESK++R +IL RID R +RPISIR G+LPR HGS+LFTRG+TQALVV T
Sbjct: 300 IIFNIESKVVRGKILSGEPRIDGRNTRTVRPISIRLGVLPRAHGSALFTRGETQALVVVT 359
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT DEQ ID+L GE+ D F+ HYNMPPFATG++GRIGVPKRREIGHG LA+R+L P+L
Sbjct: 360 LGTKHDEQIIDSLSGEYRDKFIFHYNMPPFATGEVGRIGVPKRREIGHGYLARRSLTPML 419
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P++ F Y++RLVSEITESNGSSSMASVCGG LA++DAGVPI +HVAG+AMGLI + +K
Sbjct: 420 PDSKDFQYTMRLVSEITESNGSSSMASVCGGSLAMMDAGVPIGKHVAGVAMGLILEDDKF 479
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
IL+DILGDED GDMDFKVAGTV+GITALQMDIKI GIT DI+ +AL +AK+G YIL+
Sbjct: 480 SILTDILGDEDHLGDMDFKVAGTVDGITALQMDIKIQGITKDIMDVALSQAKEGRLYILD 539
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KM+ + + E+S ++P+++T+KI+P KIRDVIGKGG+TIR++TEET TQIDI+++G +
Sbjct: 540 KMQNSIDSSRLEMSSYSPKMLTLKINPDKIRDVIGKGGATIRSITEETATQIDISEDGTV 599
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
I+ + + QEA+R++ +LT V++G VY G +LR+ DFGAI+++ G+DGLLHIS+IS
Sbjct: 600 VISGVDKDNVQEAQRKVVELTTDVEVGGVYEGKILRILDFGAIVQLFPGRDGLLHISEIS 659
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
S R+ I D L QK++VKV+ DD+GR++LS
Sbjct: 660 STRIQNINDVLSIGQKIKVKVIESDDKGRLRLS 692
>gi|451936600|ref|YP_007460454.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777523|gb|AGF48498.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 701
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/693 (58%), Positives = 530/693 (76%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ K+F+YG +K++IE GEIARQA+ SVLVS+ +TVILATVV+ ++ NFFPLT
Sbjct: 1 MFNKVTKTFQYGQHKVTIETGEIARQASGSVLVSMGETVILATVVASREVKDGQNFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK+YAAG+IPG FFKREGKPSE+E +ISRLIDRP+RPLFP+G+ N++ +VV+VLSV
Sbjct: 61 VDYIEKSYAAGKIPGGFFKREGKPSEKEILISRLIDRPLRPLFPDGFYNDVHVVVHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P IDPDI SIIG S AL IS +PF GP+G A+VG ID Y+LNPT Q+K S LDL+VA
Sbjct: 121 DPDIDPDIPSIIGSSAALCISGVPFHGPVGAARVGIIDDVYVLNPTKSQIKSSKLDLIVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VES + +L ED IL AI+FGH+ M+I I+ IN+LV G+ + W VKD
Sbjct: 181 GTADAVLMVESSANELSEDSILEAIMFGHKNMQIVIDNINDLVSIAGKNNIKWKQTVKDS 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL----IDNENLTIDINDINC 359
LI+ I IS K+ AY + KQ R L + I + S+ ++++ + +IN
Sbjct: 241 DLINYISKISLEKLSFAYSHREKQERHLKLEEIRSSVKDSVKNEYVNSKRIVPSDTEING 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+L+DLESKI+R++IL+ RID R +RPI I+ GILPR HGS+LFTRG+TQALVV
Sbjct: 301 LLFDLESKIVREKILNGEPRIDGRDTRTVRPIDIKLGILPRAHGSALFTRGETQALVVVA 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ +++L E+ D F+ HYNMPPFATG+IGRIG+PKRREIGHG LAKRAL +L
Sbjct: 361 LGTKQDEQIVESLNEEYRDRFIFHYNMPPFATGEIGRIGIPKRREIGHGYLAKRALSSLL 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P +F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP S HVAG+AMGLI + K
Sbjct: 421 PEPKEFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPFSSHVAGVAMGLILEDSKF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
IL+DILGDED GDMDFKVAGTVNGITALQMDIKI GIT DI++IAL +AK G +IL
Sbjct: 481 AILTDILGDEDHLGDMDFKVAGTVNGITALQMDIKIHGITKDIMKIALDQAKDGRLHILS 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
KMK + ++ELS F+P+++ ++I+P KIRDVIGKGG+TIR++TEET TQIDI+DEG++
Sbjct: 541 KMKDSINGSRDELSSFSPKVLNVRINPDKIRDVIGKGGATIRSITEETSTQIDISDEGLV 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
TI+ N QEA++R+ +LT V+ G +Y G V R+ DFGAII++ G+DGLLHIS+I+
Sbjct: 601 TISGANDHDVQEAQKRVSELTTEVETGGIYEGKVNRILDFGAIIQLFPGRDGLLHISEIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ R+ I + L QK++VKV+ DD+GR++LS
Sbjct: 661 NHRIQNINEVLSIGQKIKVKVIESDDKGRLRLS 693
>gi|451812362|ref|YP_007448816.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778264|gb|AGF49212.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 697
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/689 (59%), Positives = 528/689 (76%), Gaps = 4/689 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
+ K+F+YG +K++IE GEIARQA+ SVLVS+ +TVILATVV+ ++ NFFPLTVDYI
Sbjct: 1 MTKTFQYGQHKVTIETGEIARQASGSVLVSMGETVILATVVASREVKDGQNFFPLTVDYI 60
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK+YAAG+IPG FFKREGK SE+E +ISRLIDRP+RPLFP+G+ N++ +VV+VLSV+P I
Sbjct: 61 EKSYAAGKIPGGFFKREGKSSEKEILISRLIDRPLRPLFPDGFYNDVHVVVHVLSVDPDI 120
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI SIIG S ALSIS +PF GP+G A+VG+IDG Y LNPT Q+K S LDL+VAGT
Sbjct: 121 DPDIPSIIGSSAALSISGVPFHGPVGAARVGFIDGVYSLNPTKSQIKSSKLDLIVAGTAD 180
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VES + +L EDIIL AI+FGH+ M+I I+ IN+LV G+ + W+ VKD LI
Sbjct: 181 AVLMVESSANELSEDIILEAIMFGHKNMQIVIDNINDLVSMAGKNSIEWNSTVKDSDLID 240
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN----ENLTIDINDINCILYD 363
I IS K+ AY + KQ R L + I + SS+ + N +I+ +L+D
Sbjct: 241 YISKISLEKLSLAYSHREKQERHLRLEEIRSFVKSSIKNGYPNPRNAIPSDAEIDGLLFD 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LESKI+R++IL+ RID R +RPI+I+ GILPR HGS+LFTRG+TQALVV LGT
Sbjct: 301 LESKIVREKILNGEPRIDGRDTRTVRPINIKLGILPRAHGSALFTRGETQALVVVALGTK 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
+DEQ +++L E+ D F+ HYNMPPFATG+IGRIGVPKRREIGHG LAKRAL +LP++
Sbjct: 361 QDEQIVESLNEEYRDRFIFHYNMPPFATGEIGRIGVPKRREIGHGYLAKRALSSLLPDSK 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP S HVAG+AMGLI + K IL+
Sbjct: 421 EFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPFSSHVAGVAMGLILEDGKFAILT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGTVNGITALQMDIKI GIT DI+++AL +AK G +IL KMK
Sbjct: 481 DILGDEDHLGDMDFKVAGTVNGITALQMDIKIHGITKDIMKVALDQAKDGRLHILRKMKE 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS F+P+++ I+I+P KIRDVIGKGG+TIR++TEET TQIDI+D+G++TI+
Sbjct: 541 SIQGSRAELSSFSPKVLNIRINPEKIRDVIGKGGATIRSITEETSTQIDISDDGLVTISG 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N QEA+RR+ +LT V+ G VY G V R+ DFGAII++ GKDGLLHIS+I++ R+
Sbjct: 601 VNDNDVQEAQRRVAELTTEVETGGVYDGKVNRILDFGAIIQLFPGKDGLLHISEIANHRI 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLS 752
I + L QK+RVKV+ DD+GR++LS
Sbjct: 661 QNINEVLSVGQKIRVKVIESDDKGRLRLS 689
>gi|429744261|ref|ZP_19277763.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
020 str. F0370]
gi|429163338|gb|EKY05572.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
020 str. F0370]
Length = 701
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 527/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ +K+F+YG + +++E GEIARQA ++V V++ DTV+L V + K+ + +FFPLT
Sbjct: 1 MFDNHVKTFQYGQHTVTLETGEIARQAAAAVKVAMGDTVVLVAVTANKEVKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY+DG Y+LNPT QL+KS LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYLDGGYVLNPTKTQLEKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT +A++ VESE++ LPED++L A+++GHE+M+ I AINEL V + +W D
Sbjct: 181 GTAQAVLMVESEAQILPEDVMLGAVVYGHEQMQAVIKAINELADEVNPEVWDWKAPEPDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I +A++I++KQ R + ++LI+ + T+ N+I I
Sbjct: 241 ELVAKVKEIAGDTIAEAFKIRSKQARGAKIAEAWAAVQAALINEDTDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL RID R +RPI+I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILAGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIAVLPEPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL +MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQMK- 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E ELS+ APRL T+KI+P KIR+VIGKGG TIR +T ETGT+I+I D+G ITIA+
Sbjct: 540 EAVDGPQELSQHAPRLYTMKINPDKIREVIGKGGETIRAITAETGTEINIADDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
++ S + AK+RIE +T V++GKVY G+V+++ D GAI+ +L GK GL+H+SQI+ +
Sbjct: 600 VSADSVEAAKKRIEDITAEVEVGKVYDGVVVKILDNNVGAIVDVLPGKGGLVHVSQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V+VK L +DDRGR++LS+
Sbjct: 660 RVKEVGDYLKVGQTVKVKALEVDDRGRVRLSI 691
>gi|333375612|ref|ZP_08467420.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC
23330]
gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC
23330]
Length = 708
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/692 (57%), Positives = 523/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK IKSF+YG +++E GEIARQA ++V VS+ DTV+L V + KD +FFPLT
Sbjct: 1 MFNKHIKSFQYGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 VDYFERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY++ Y+LNPT +QL +S LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSRSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ LPED++L A++FGHE+M+ I AINEL Q V + +W +
Sbjct: 181 GTEQAVLMVESEADILPEDVMLGAVVFGHEQMQTVITAINELAQEVNPEVWDWKAPEANT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ IS I +A++I+ KQ R + + LI E T+ N+I I +
Sbjct: 241 DLIAKVKEISGDLIAEAFKIRQKQARSAKLDEAWAAVEAVLITEETDTLAKNEIKGIFKN 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL RID R +RP++I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEAAVVRGQILAGQPRIDGRDTRTVRPLNIQTNVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL +M+T
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILAQMQT 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS+ APRL T+KI+P KIR+VIGKGG TIR++T ETGT+I+I D+G++TIA+
Sbjct: 541 AV-AGPQELSQHAPRLYTMKINPDKIREVIGKGGETIRSITAETGTEINIADDGVVTIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+ +G+ AK RIE +T V++GKVY G V++L D GAI+ I+ GKDGL+HISQI+ +
Sbjct: 600 TTAEAGEAAKARIEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHISQITHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +DDRGR++LSM
Sbjct: 660 RVKNVSDYLQVGQTVSVKALEVDDRGRVRLSM 691
>gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
ATCC BAA-1200]
gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
ATCC BAA-1200]
Length = 701
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/692 (57%), Positives = 526/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YGS +++E GEIARQA +V V++ DTV+L V + K+ + +FFPLT
Sbjct: 1 MFDKHVKTFQYGSQTVTLETGEIARQAAGAVKVAMGDTVVLVAVTANKEVKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY+DG Y+LNPT QL+KS LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVDGGYVLNPTKTQLEKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++ LPED++L A+++GHE+M+ I AINEL V + +W +
Sbjct: 181 GTEQAVLMVESEAQILPEDVMLGAVVYGHEQMQAVIRAINELADEVNPEVWDWKAPEPNA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ I+ I +A++I++KQ R + ++LI + T+ N+I I
Sbjct: 241 ELIAKVKEIAGDTIAEAFKIRSKQARGAKIAEAWAAVQAALITEDTDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RPI+I+T +LPRTHGS+LFTRG+TQAL V TLGT
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVTTLGTQ 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG+ GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGECGRMGAPKRREIGHGRLAKRALLAVLPEPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+QIAL +AK+ +IL +MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMK- 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E + ELS+ APRL T+KI+ KIRDVIGKGG TIR LT ETGT+I+I D+G ITIA+
Sbjct: 540 EAVQGPQELSQHAPRLFTMKINQDKIRDVIGKGGETIRALTAETGTEINIEDDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
++ + + A++RIE++T V++GKVY G V+++ D GAI+ +L GK GL+HISQI+ +
Sbjct: 600 VSADAVEAARKRIEEITAEVEVGKVYDGTVVKILDNNVGAIVDVLPGKGGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V+VK L +DDRGR++LS+
Sbjct: 660 RVKDVNDYLKVGQVVKVKALEVDDRGRVRLSI 691
>gi|350561994|ref|ZP_08930831.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349780312|gb|EGZ34647.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 694
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/684 (55%), Positives = 516/684 (75%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
K+F+YG+ ++ E G IARQAT +VLV+I DTV+L TVV+ K+ +FFPLTV+Y E+
Sbjct: 5 KTFQYGNQTVTFETGGIARQATGAVLVNIADTVVLVTVVARKEADPGRDFFPLTVNYQER 64
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YAAG+IPG FFKREG+P+E+ET+ SRLIDRP+RPLFPEG+ +E QIV V+S+NP++DP
Sbjct: 65 TYAAGKIPGGFFKREGRPNEKETLTSRLIDRPLRPLFPEGFTHETQIVATVMSINPEVDP 124
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI +++G S AL++S +PF GP+G A+VGY DG+Y+LNPT +L S LDL+VAGTE A+
Sbjct: 125 DIVAMLGASAALAVSGVPFAGPIGAARVGYRDGQYLLNPTASELPDSQLDLVVAGTENAV 184
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
I VESE+ +L ED++L A+++GHE+M+ AI AI EL + G+ +W D ++ +++
Sbjct: 185 IMVESEASELSEDVMLGAVMYGHEQMQAAIQAIRELAADAGKPAWDWTAPQTDDSVDAQV 244
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKII 369
++ + + +AYQI KQ R ++ D+ L + + ++LE +I+
Sbjct: 245 AEVARNALVEAYQIAEKQARTERLNSLRADVVERLATGDEGAPSAEAVKNAFHELEYRIV 304
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R +ILD RID R +RPI+++TG+LPR HGS++FTRG+TQALVVATLGT RD Q I
Sbjct: 305 RDRILDGNPRIDGRDTRSVRPITVQTGVLPRAHGSAVFTRGETQALVVATLGTDRDAQVI 364
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DA+ GE + FMLHYN PP+ TG+ G +G PKRREIGHGRLAKR + V+P ++ F Y I
Sbjct: 365 DAIEGERRERFMLHYNFPPYCTGETGMVGSPKRREIGHGRLAKRGVQAVVPRDDSFPYVI 424
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGLIK+ ++ +L+DILGDE
Sbjct: 425 RVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEADRFAVLTDILGDE 484
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A++G +ILE+M + +
Sbjct: 485 DHLGDMDFKVAGTRAGVTALQMDIKIDGITREIMEKALQQAREGRLHILERMGESISSHR 544
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
E+S +APR IT++I+P KIRDVIGKGG+TIR LTEETGT IDI+D+G++ IAS + +G
Sbjct: 545 TEMSSYAPRFITLRINPEKIRDVIGKGGATIRALTEETGTSIDISDDGVVKIASTDQAAG 604
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+EAKRRIE+LT V++G+VY+G V+++ DFGA + IL G+DGL+HISQIS++RV +TDF
Sbjct: 605 EEAKRRIEELTADVEVGRVYSGRVVKIMDFGAFVSILPGRDGLVHISQISNERVENVTDF 664
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
L E V VKVL +D +GRI+LSM
Sbjct: 665 LNEGDSVTVKVLEVDKQGRIRLSM 688
>gi|34496921|ref|NP_901136.1| polynucleotide phosphorylase [Chromobacterium violaceum ATCC 12472]
gi|81656248|sp|Q7NY10.1|PNP_CHRVO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|34102777|gb|AAQ59141.1| polyribonucleotide nucleotidyltransferase [Chromobacterium
violaceum ATCC 12472]
Length = 722
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/694 (57%), Positives = 533/694 (76%), Gaps = 3/694 (0%)
Query: 62 NFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFP 121
+FNKI K+F++G +++E GEIARQA+ SV+VS++DTV++ +VV K+ +FFP
Sbjct: 7 TLVFNKITKTFQFGRQTVTLETGEIARQASGSVVVSVDDTVVMVSVVGGKNVKPGQDFFP 66
Query: 122 LTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVL 181
LTVDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ +++QIV VL
Sbjct: 67 LTVDYLERTYAAGKIPGGFFKREGKQSEKEVLTSRLIDRPIRPLFPEGFYHDVQIVATVL 126
Query: 182 SVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLL 241
S+NP++D DI ++IG S AL+IS LPF GP+G A+VGY +G+YILNPT +L+ S +DL+
Sbjct: 127 SLNPEVDSDIPAMIGASAALAISGLPFAGPIGAARVGYANGEYILNPTKTELQTSQMDLV 186
Query: 242 VAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVK 301
VAGT +A++ VESE+K+LPE ++L A++FGHE+M+ AI AINEL V +W K
Sbjct: 187 VAGTSRAVLMVESEAKELPEAVMLGAVVFGHEQMQAAIKAINELADEVNPVMFDWAAPAK 246
Query: 302 DKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCIL 361
D+ LI++I I+ K+ +A++++ KQ R + + + LI+ E T+ N+I I
Sbjct: 247 DEALIAQIRGIAGEKLAEAFRLRQKQARTVAINEAWDAVKAGLINEETDTLKANEIKGIF 306
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE++I+R QIL RID R +RPISIR +LPRTHGS+LFTRG+TQALVVATLG
Sbjct: 307 KSLEAEIVRGQILAGEARIDGRDTRTVRPISIRNNVLPRTHGSALFTRGETQALVVATLG 366
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T +DEQ IDAL GE+T+ FMLHYN PP++TG+ GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 367 TKQDEQIIDALAGEYTERFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALVAVLPP 426
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F YS+R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G + +
Sbjct: 427 EDEFGYSMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNRFAV 486
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL M
Sbjct: 487 LTDILGDEDHLGDMDFKVAGTAAGVTALQMDIKIQGITKEIMQVALEQAKEGRLHILGLM 546
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
K E ELS APRL +KI+P KIR+VIGKGG TIR++T++TG +I+I ++G ITI
Sbjct: 547 K-EAVDGPQELSAHAPRLYVMKINPEKIREVIGKGGETIRSITKDTGCEINIEEDGTITI 605
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQIS 719
AS +S + AK+RIE++T V++GKVY G V+++ D GAI+ IL GKDGL+HISQI+
Sbjct: 606 ASVSSEGAEAAKKRIEEITVEVEVGKVYEGTVVKILDNNVGAIVSILPGKDGLVHISQIA 665
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++R+ ++D+LKE Q V+VK + +DDRGRI+LS+
Sbjct: 666 NERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSI 699
>gi|374622806|ref|ZP_09695327.1| polynucleotide phosphorylase/polyadenylase [Ectothiorhodospira sp.
PHS-1]
gi|373941928|gb|EHQ52473.1| polynucleotide phosphorylase/polyadenylase [Ectothiorhodospira sp.
PHS-1]
Length = 696
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/686 (54%), Positives = 510/686 (74%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG + +++E GEIARQA+ +V+V++ TV+L T V K+ +FFPLTV+Y
Sbjct: 4 ISKSFQYGQHTVTLETGEIARQASGAVMVNVAGTVVLVTAVGRKEAVPGRDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE+ET+ SRLIDRP+RPLFP+G+ NE+Q+V V+S+NP++
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPKGFTNEVQVVATVMSLNPEV 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI +++G S A+++S LPF GP+G A+VGY+DG+Y+LNP QLK+S LDL+VAGT
Sbjct: 124 DPDIPALLGASAAVALSGLPFAGPIGAARVGYVDGQYVLNPDLSQLKESALDLVVAGTAN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A+I VESE+ L E+++L A+I+GHE+M++AI AI EL G+ +W P + L +
Sbjct: 184 AVIMVESEAAMLSEEVMLGAVIYGHEQMQVAIQAIQELAAEAGKPAWSWQPAQDNTDLRT 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
++ + AYQ+ KQ R + + + + L D E + ++ I +DLE +
Sbjct: 244 RVAEACHADLTAAYQVAEKQERTQRIAEVREAVVARLADGEEGSPLAEEVKEIFHDLEKR 303
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +ILD RID R +RPI +R G+LPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 304 IVRDRILDGQPRIDGRDTRTVRPIDVRVGVLPRTHGSALFTRGETQAIVTATLGTDRDSQ 363
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDA+ GE + FMLHYN PP+ TG+ G +G PKRREIGHGRLAKR + V+P F Y
Sbjct: 364 IIDAIEGERRERFMLHYNFPPYCTGETGMVGSPKRREIGHGRLAKRGVQGVMPAEGDFPY 423
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAG+AMGLIKDG++ +L+DILG
Sbjct: 424 VLRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGVAMGLIKDGDRFAVLTDILG 483
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT DI++ AL +A++G +IL +M +
Sbjct: 484 DEDHLGDMDFKVAGTEEGVTALQMDIKIDGITRDIMETALAQAREGRLHILSEMNKVIST 543
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S +APR ITI+I+P KIRDVIGKGG+TIR LTEETG IDI+D G++ IAS +
Sbjct: 544 PRVEMSAYAPRFITIRINPEKIRDVIGKGGATIRALTEETGATIDIDDSGVVKIASVDKE 603
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+G+EA+RRIE++T V++G++Y G V ++ DFGA + IL G+DGL+HISQIS +RV ++
Sbjct: 604 AGEEARRRIEEITADVEVGRIYEGRVAKIMDFGAFVTILPGRDGLVHISQISEERVESVS 663
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +KE + V+VKVL +D +GRI+LSM
Sbjct: 664 ERVKEGETVKVKVLEVDKQGRIRLSM 689
>gi|357404301|ref|YP_004916225.1| polyribonucleotide nucleotidyltransferase [Methylomicrobium
alcaliphilum 20Z]
gi|351716966|emb|CCE22631.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Methylomicrobium alcaliphilum
20Z]
Length = 694
Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/689 (56%), Positives = 518/689 (75%), Gaps = 2/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K F+YG +++E GEIARQA +V++ +E T +L TVV K+ S +FFPLTV
Sbjct: 1 MNPIRKEFQYGDQLVTLETGEIARQADGAVMIDMEGTTLLVTVVGKKEANSGGDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK++AAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP+G+ NE+QI+ VLS+N
Sbjct: 61 NYQEKSFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFTNEVQIIATVLSLN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++DP+I ++IG S ALSIS LPF GP+G A+VGY G+Y+LNPT L +S L+L+VAG
Sbjct: 121 PEVDPEIPALIGASAALSISGLPFNGPVGAARVGYKAGQYLLNPTPSSLAESQLELVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ L E+++L A++FGHE+M+ AI AI EL V + + W P+ +
Sbjct: 181 TEHAVLMVESEAQCLSEEVMLGAVLFGHEQMQTAIVAIKELAAMVNKAPMAWQPVAANTE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L S ++ E I+ AYQ+ K +R K I L +E + +DI I+ +L
Sbjct: 241 LESLVVAEVEAGIKAAYQVPEKLVRQEQLKEIRNAAVDKLTADEQYSE--SDIRGIIENL 298
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E KI+R IL++G RID R + +RPISIRTG+LPRTHGS+LFTRG+TQALVVATLGT R
Sbjct: 299 EKKIVRGSILEEGKRIDGRDLKTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTER 358
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDAL GE+ +SFMLHYN PP+ G+ G +G PKRREIGHGRLAKR + VLPN ++
Sbjct: 359 DSQVIDALEGEYRESFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVQAVLPNMDE 418
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSE+TESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+G++ +LSD
Sbjct: 419 FPYVVRVVSEVTESNGSSSMASVCGSSLALMDAGVPIKSPVAGIAMGLIKEGDQFAVLSD 478
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
I+GDED GDMDFKVAG+ G+TALQMDIKI GIT +I++ AL +AK+G +IL +M
Sbjct: 479 IMGDEDHLGDMDFKVAGSEEGVTALQMDIKIDGITAEIMKTALEQAKQGRLHILGEMNKS 538
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + + ++S +APR+I+ KIDPSKIR+VIGKGG+TIR++TE+TG ID+ D+GI+ +AS
Sbjct: 539 LSETRGQMSDYAPRIISFKIDPSKIREVIGKGGATIRSITEQTGASIDLTDDGIVKVASV 598
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +G+EA+R IE++T V++GK Y G V RL DFGA + IL GKDGL+HISQIS + V+
Sbjct: 599 DKQAGEEARRLIEEITAEVEVGKTYEGKVARLMDFGAFVTILPGKDGLVHISQISDEHVD 658
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E V+VKVL ID +GR++LSM
Sbjct: 659 KVSDKLSEGDVVKVKVLEIDRQGRVRLSM 687
>gi|300718573|ref|YP_003743376.1| polyribonucleotide nucleotidyltransferase [Erwinia billingiae
Eb661]
gi|299064409|emb|CAX61529.1| Polyribonucleotide nucleotidyltransferase [Erwinia billingiae
Eb661]
Length = 714
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/690 (55%), Positives = 523/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+K F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVKKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGKKTTKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRP+RPLFPEG++NE+QI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFINEVQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S LPF GP+G A+VGY++ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVHPDIVALIGASAALSLSGLPFNGPIGAARVGYLNDQYVLNPTTDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L ED +L A++FGHE+ ++ I+ IN LV G+ + +W P ++
Sbjct: 181 GTQGAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIDQINALVAEAGKPRWDWKPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L ++I ++E ++ +AYQI KQ R I + ++L+ E+ ++D N+I +L+
Sbjct: 241 SLQTRIAALAESRLSEAYQITEKQERYAQVGVIKSETTAALL-AEDASLDDNEIGDLLHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKNVVRSRILSGAPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNLDELMGEKTDSFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|224825869|ref|ZP_03698973.1| Polyribonucleotide nucleotidyltransferase [Pseudogulbenkiania
ferrooxidans 2002]
gi|224602093|gb|EEG08272.1| Polyribonucleotide nucleotidyltransferase [Pseudogulbenkiania
ferrooxidans 2002]
Length = 719
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/697 (56%), Positives = 525/697 (75%), Gaps = 9/697 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI K+F+YG + +++E GE+ARQA+ +VLV++EDTV+L +VV ++ +FFPLT
Sbjct: 1 MFNKISKTFQYGRHTVTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ +++QIV V+S+
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+ID DI ++IG S AL+IS LPF GP+G A+VGY +G YILNPT +L+ S LDL+VA
Sbjct: 121 NPEIDSDIPAMIGASAALAISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT +A++ VESE+K+LPE ++L A++FGH++++ AI AINEL V +W ++
Sbjct: 181 GTHRAVLMVESEAKELPEAVMLGAVVFGHDQLQAAIKAINELADEVNPVMWDWSAPAQND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ +S KI A++I+ KQ R D+ ++LI+ E T+ N+I I
Sbjct: 241 ELIAKVREVSGEKIANAFRIRQKQARTQVLAEAWADVKAALINEETDTLTANEIKGIFKS 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE++I+R QIL RID R +RPI+IRTG+LPRTHGS+LFTRG+TQA+VV TLGT
Sbjct: 301 LEAEIVRGQILAGEPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLGTQ 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG+ GR+G PKRREIGHGRLAKRAL VLP+ +
Sbjct: 361 RDEQIIDALAGEYTDRFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALAQVLPSAD 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F YS+R+VSEITESNGSSSMASVCGGCLALL+AGVP+ HVAGIAMGLI +G + +L+
Sbjct: 421 EFGYSMRVVSEITESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALDQAKEGRLHILGLMK- 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E + +LS APRL +KI+P KIR+VIGKGG TIR++T++TGT+I+I ++G ITIAS
Sbjct: 540 EAVEGPQQLSTHAPRLFVMKINPDKIREVIGKGGETIRSITKDTGTEINIEEDGTITIAS 599
Query: 664 FNS-------VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHIS 716
+ QEA R + + S Q + + G R + GAI+ IL GKDGL+HIS
Sbjct: 600 VTQXXXXKVLMPXQEAHRGNHRRSRSRQDLRRHRGEDSR-HNVGAIVSILPGKDGLVHIS 658
Query: 717 QISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
QI+++R+ ++D+LKE Q V+VK + +DDRGRI+LS+
Sbjct: 659 QIANERIKNVSDYLKEGQVVKVKAIEMDDRGRIRLSI 695
>gi|350552169|ref|ZP_08921375.1| Polyribonucleotide nucleotidyltransferase [Thiorhodospira sibirica
ATCC 700588]
gi|349795034|gb|EGZ48840.1| Polyribonucleotide nucleotidyltransferase [Thiorhodospira sibirica
ATCC 700588]
Length = 697
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/686 (54%), Positives = 515/686 (75%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I SF+YG + +++E GEIARQA+ +VLV++ TV+L T V+ + + +FFPLTV+Y
Sbjct: 4 ISHSFQYGHHTVTLETGEIARQASGAVLVNMAQTVVLVTAVARPETVAGRDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE+ET+ SRLIDRP+RPLFPEG+ NE+Q++ V+S+NP++
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEGFTNEVQVIATVVSINPEV 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI +I+G S AL++S +PF+GP+ A+VGY DG Y+LNP+ ++K+S LDL+VAGT+
Sbjct: 124 DPDIPAILGASAALALSGVPFMGPISAARVGYKDGAYLLNPSQTEIKESLLDLVVAGTQN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A+I VESE+++L ED++L A+ +GH +M++AI AIN LV G+ + +W D L++
Sbjct: 184 AVIMVESEAQELSEDVMLGAVNYGHAQMQVAIEAINHLVSLAGKPRWDWVAPEHDAALMA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+I + + +AYQI KQ R L + ++ +++ E + + + +DLE +
Sbjct: 244 RIESHCLESLTQAYQIAEKQARTLRINTLRDELVAAIASGEEGAPSADLVKVLFHDLEKR 303
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R ++LD RID R +RPI+ R G+LPRTHGS+LFTRG+TQALV+ATLGT RD Q
Sbjct: 304 IVRARVLDGLPRIDGRDTRTVRPITARVGVLPRTHGSALFTRGETQALVIATLGTDRDAQ 363
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDA+ GE + FMLHYN PP+ TG+ G +G PKRREIGHGRLAKR + V+P F Y
Sbjct: 364 LIDAIEGERKERFMLHYNFPPYCTGETGMVGTPKRREIGHGRLAKRGIQAVMPPETDFPY 423
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG +AL+DAGVP+ VAGIAMGLIK+GE+ ++SDILG
Sbjct: 424 VLRVVSEITESNGSSSMASVCGTSMALMDAGVPLKAPVAGIAMGLIKEGERFAVISDILG 483
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGTVNG+TALQMDIKI GIT +I+Q AL +A G +ILE+M +
Sbjct: 484 DEDHLGDMDFKVAGTVNGVTALQMDIKIDGITAEIMQQALEQALAGRLHILERMTQAIDS 543
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S +APR IT++I+P KIRDVIGKGG+TIR LTEETG IDI+D GII IAS +
Sbjct: 544 PRAEMSSYAPRFITLRINPEKIRDVIGKGGATIRALTEETGATIDIDDTGIIKIASVDKE 603
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+G+EA+RRIE++T V++G+VY G V+++ DFGA + I+ G+DGL+HISQIS +RV +
Sbjct: 604 AGEEARRRIEEITADVEVGRVYEGRVVKIMDFGAFVSIMPGRDGLVHISQISDERVANVA 663
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E Q ++VKVL +D +GRI+LS+
Sbjct: 664 DRLSEGQSIKVKVLEVDKQGRIRLSI 689
>gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
ATCC 33394]
gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
ATCC 33394]
Length = 705
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/692 (56%), Positives = 523/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK IK+F+YG +++E GEIARQA ++V VS+ DTV+L V + KD +FFPLT
Sbjct: 1 MFNKHIKTFQYGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSC 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY++ Y+LNPT +QL +S LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNDTYVLNPTKQQLHRSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT +A++ VESE+ LPED++L A+++GHE+M+ I AINEL V + +W +
Sbjct: 181 GTAQAVLMVESEADILPEDVMLGAVVYGHEQMQAVIQAINELADEVNPEVWDWKAPETNA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ +IS I +A++I+ KQ R + ++LI+ E T+ N+I I
Sbjct: 241 ELVAKVKDISGSLIAEAFKIRQKQARTAKLDEAWAAVEAALINEETDTLAKNEIKGIFKQ 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL RID R +RPI+I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
FNY++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +L+
Sbjct: 421 DFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+QIAL +AK+ +IL +M+
Sbjct: 481 DILGDEDHLGDMDFKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMQA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS+ APRL T+KI+P KIR+VIGKGG TIR++T ET T+I+I ++G ITIA+
Sbjct: 541 AV-SGPQELSQHAPRLYTMKINPDKIREVIGKGGETIRSITAETNTEINIAEDGTITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+ +G+ AK RIE +T V++GKVY G V++L D GAI+ I+ GKDGL+HISQI+ +
Sbjct: 600 TTAEAGEAAKARIETITAEVEVGKVYEGTVVKLLDNNVGAIVTIMPGKDGLVHISQITHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V+VK L +D+RGR++LSM
Sbjct: 660 RVKNVSDYLQVGQTVQVKALEVDERGRVRLSM 691
>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
Length = 710
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/689 (55%), Positives = 518/689 (75%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+ KS K G++++ +E GE+ARQA +V+VS +TV+L TVV ++ +FFPLT
Sbjct: 5 MFNKVSKSMKLGAHELKLETGEVARQADGAVMVSYGETVVLVTVVGNQNVKEGQDFFPLT 64
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY EK YAAG+IPG FFKREG+PSE E ++ RLIDRP+RPLFP+G+ N++QIV VLS
Sbjct: 65 VDYQEKTYAAGKIPGGFFKREGRPSENEILVCRLIDRPLRPLFPKGFYNDVQIVATVLSS 124
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +ID DI +IIG S ALSIS +PF GP+G KVGY+DG+Y++NPT QL++S LDL+VA
Sbjct: 125 DSEIDADIPAIIGASAALSISGIPFYGPIGATKVGYVDGEYVINPTKTQLQESELDLVVA 184
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+K+L E ++L+A++ GH+ K I IN+ ++ + W+ ++
Sbjct: 185 GTKDAVLMVESEAKELSEKVMLDAVLAGHKAAKDVIKLINDFAKDSAKDPWEWNAPEPNQ 244
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LISKI ++E + KA+ IK K R I + + LI + T+++N++N ++
Sbjct: 245 ELISKISKLAEKDLSKAFSIKLKSERSQKISEIKDKVQAELITEDMGTLEVNEVNKEFFN 304
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+KI+R +ILD RID R +RPI I T +LPRTHGS+LFTRG+TQAL VATLGT
Sbjct: 305 LEAKIVRSKILDGEPRIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTP 364
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL GE+TD FMLHYN PPF+TG+ GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 365 RDAQIIDALQGEYTDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALLAVLPEQE 424
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y+IRLVSEI ESNGSSSMASVCGGC+A+LDAGVP+ HVAGIAMGLIK+ +V IL+
Sbjct: 425 DFDYTIRLVSEIMESNGSSSMASVCGGCMAMLDAGVPLKSHVAGIAMGLIKEDNRVAILT 484
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+Q+AL +AK+G +IL+ MK
Sbjct: 485 DILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITTEIMQVALKQAKEGREHILDLMKK 544
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELSK+APR++T+ I P KIRDVIGKGG+ I+ LTEET T IDI D+G++ +A
Sbjct: 545 ALKSSRTELSKYAPRIMTLNIHPDKIRDVIGKGGAVIKALTEETNTTIDITDDGLVKVAC 604
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ GQ A RI+++T V++ ++Y G V+++ DFGAI++++ GKDGLLHISQI+ +RV
Sbjct: 605 TSGEEGQLAIDRIKEITADVEVDQIYDGKVVKILDFGAIVQLIPGKDGLLHISQIAHERV 664
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ D L E +V+VKV+ +D +G++++S
Sbjct: 665 KSVKDHLSEGDEVKVKVIEVDQKGKVRVS 693
>gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
Length = 716
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/692 (56%), Positives = 523/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +KSF+YG + +++E GEIARQA +V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFNKHVKSFQYGKHTVTLETGEIARQAAGAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGY +G+Y+LNP+ +L S LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYANGQYLLNPSKTELATSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT++A++ VESE+ LPED++L A++FGHE+M+ INAINEL V + +W +
Sbjct: 181 GTKQAVLMVESEANILPEDVMLGAVVFGHEQMQAVINAINELADEVNPEVWDWKAPETNT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I +A++I+ KQ R + ++LI+ E T+ N+I I
Sbjct: 241 ELVAKVREIAGATIAEAFKIRQKQARSAKLDEAWAAVEAALINEETDTLAKNEIKGIFKQ 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QIL RID R +RPI+I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRGQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPDPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
FNY++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI + K +L+
Sbjct: 421 DFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL +M+
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILSQMQA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V ELS+ APRL T++I+P KIR+VIGKGG TIR++T ET T+I+I+D+G++TIA+
Sbjct: 541 AV-AGPQELSQHAPRLYTMRINPDKIREVIGKGGETIRSITAETHTEINISDDGVVTIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+ +G+ AK RIE +T V++GKVY G V+++ D GAI+ ++ GKDGL+HISQI+ +
Sbjct: 600 TTAEAGEAAKARIEMITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+LK Q V VK L +D+RGR++LS+
Sbjct: 660 RVKDVNDYLKVGQVVNVKALDVDERGRVRLSI 691
>gi|283788208|ref|YP_003368073.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
ICC168]
gi|282951662|emb|CBG91362.1| polyribonucleotide nucleotidyltransferase [Citrobacter rodentium
ICC168]
Length = 734
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + +L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAESRLSDAYRITDKQERYAQVDAIKSETIDALL-AEDETLDANELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 712
>gi|404378814|ref|ZP_10983893.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
ATCC 29453]
gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
ATCC 29453]
Length = 703
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/692 (56%), Positives = 522/692 (75%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK +K+F+YG+ ++++E GEIARQA ++V VS+ DTV+L V + KD +FFPLT
Sbjct: 1 MFNKHVKTFRYGNQQVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY E+ YAAG+IPG FFKRE K SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+S
Sbjct: 61 VDYFERTYAAGKIPGGFFKRESKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISC 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI ++IG S AL +S +PF GP+G A+VGYI+ Y+LNPT Q+ +S LDL+VA
Sbjct: 121 DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYINDTYVLNPTKHQMHRSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ LPED++L A+++GHE+M+ I AINEL V + +W +
Sbjct: 181 GTESAVLMVESEANILPEDVMLGAVVYGHEQMQTVIAAINELASMVNPELWDWKAPETNN 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++KI +IS I +A++I++KQ R + ++LI E T+ N+I I
Sbjct: 241 DLVAKIKDISGSLIAEAFKIRSKQARSAKLDEAWAAVEAALITEETDTLAKNEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE++++R QIL RID R +RPI+I+T +LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEAEVVRGQILAGQPRIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
FNY++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAG+AMGLI + K +L+
Sbjct: 421 DFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGVAMGLILEDNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL +M+
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILTQMQA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
V + ELS+ APRL T+KI+P KIR+VIGKGG TIR +T ET T+I+I D+G++TIA+
Sbjct: 541 AV-EGPQELSQHAPRLYTMKINPDKIREVIGKGGETIRAITAETNTEINIADDGVVTIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--FGAIIRILSGKDGLLHISQISSK 721
+ +G+ AK RIE +T V++GKVY G V++L D GAI+ I+ GKDGL+HISQI+ +
Sbjct: 600 TTAEAGEAAKARIEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHISQITHE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L+ Q V VK L +D+RGR++LSM
Sbjct: 660 RVKNVSDYLQVGQTVTVKALEVDERGRVRLSM 691
>gi|170765724|ref|ZP_02900535.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
TW07627]
gi|170124870|gb|EDS93801.1| polyribonucleotide nucleotidyltransferase [Escherichia albertii
TW07627]
Length = 711
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 530/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E K++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKKVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ NQ+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMNQEVPVKVLEVDRQGRIRLSI 689
>gi|71278713|ref|YP_268932.1| polynucleotide phosphorylase/polyadenylase [Colwellia
psychrerythraea 34H]
gi|123774912|sp|Q482T5.1|PNP_COLP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71144453|gb|AAZ24926.1| polyribonucleotide nucleotidyltransferase [Colwellia
psychrerythraea 34H]
Length = 705
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 518/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I K F+ G + +++E G IARQA+++V+ S++DT +L +VV K+ +FFPLT
Sbjct: 1 MLNPITKKFQLGKHTVTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+AYAAG+IPGSFFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NE+Q+++ V+SV
Sbjct: 61 VNYQERAYAAGKIPGSFFKREGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I PDI S+IG S AL+IS LPF GP+G A+VGY DG+YILNP +L S LDL+V+
Sbjct: 121 NPEIAPDIISLIGTSAALAISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLDLVVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L E+++L A+++GHE+M++A++AI E V +W VK+
Sbjct: 181 GTDSAVLMVESEADVLSEEVMLGAVVYGHEQMQVAVSAIKEFKAEVNTPSWDWVAPVKNA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++KI +SE ++ +AYQI K +R K I + +L+ EN +D+ + + +D
Sbjct: 241 ELLAKIAELSEAQVNEAYQITEKAVRYEKIKEIRSSVLEALL-AENADVDVQEAKDLFHD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +I D RID R IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 300 LEKTVVRGRITDGNPRIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQ 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q++D LMG+ TD FMLHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+
Sbjct: 360 RDAQRLDTLMGDKTDPFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVMPSLE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GEK V+LS
Sbjct: 420 EFPYAVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK ++IL M
Sbjct: 480 DILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEIMQIALNQAKAARTHILSVMDE 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ ++++S+FAPR+ T+K+ KIRD+IGKGG+TIR LTEETGT I+I D+G + IA+
Sbjct: 540 AIGGHRDDISEFAPRIHTMKVSQDKIRDIIGKGGATIRQLTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ ++A RI+ LT +++G +YTG V+R+ DFGA + +L GKDGL+HISQIS +RV
Sbjct: 600 TSGEQAEDAINRIKALTAEIEVGTLYTGKVVRIVDFGAFVNVLPGKDGLVHISQISEERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N +++ L E Q+V+VKVL +D +GR++LS+
Sbjct: 660 NNVSEVLTEGQEVKVKVLEVDRQGRVRLSI 689
>gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae]
Length = 708
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/690 (55%), Positives = 521/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + ++IE G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E++YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG+ NEIQI+ V+S+
Sbjct: 61 VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFFNEIQIIATVVSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALSIS +PF GP+G A+VGYID +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSISGIPFNGPIGAARVGYIDDQYVLNPTVDELKSSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L E+ +L A++FGHE+ +I I IN L ++K +W P ++
Sbjct: 181 GTSSAVLMVESEADLLTEEQMLGAVVFGHEQQQIVIENINALAAETNKEKWDWQPEAINE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L S+I ++E ++ AY+I KQ R I +D+ ++L+ EN ++D+ +IN IL
Sbjct: 241 ELHSRIAELAEQRLGDAYRITEKQERYTNVDAIKEDVTNTLL-AENESLDVAEINDILSG 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE K++R ++L RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKKVVRTRVLKGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE+TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+PN +
Sbjct: 360 RDAQVIDELMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNQS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDDYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILTIMEE 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S+FAPR+ TI I+P KI+DVIGKGGS IR LTEETGT I+I+D+G + IA+
Sbjct: 540 AINRPREEISEFAPRIHTIHINPDKIKDVIGKGGSVIRALTEETGTTIEIDDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S + A RRIE +T V++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDSSKAEAAIRRIEDITAEVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIAEKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL ID +GRI+LS+
Sbjct: 660 EKVTDYLQLGQEVPVKVLEIDRQGRIRLSI 689
>gi|422020991|ref|ZP_16367505.1| polynucleotide phosphorylase/polyadenylase [Providencia sneebia DSM
19967]
gi|414099896|gb|EKT61529.1| polynucleotide phosphorylase/polyadenylase [Providencia sneebia DSM
19967]
Length = 707
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + ++IE G +ARQAT++V+V+++DT + T V+ K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG++NEIQI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFVNEIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VG+ID +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGVPFNGPIGAARVGFIDDQYVLNPTADELKLSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ IN INELV+ G++K +W P ++
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHDQQQVVINEINELVKLAGKEKWDWQPESVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L KI ++E ++ AY+I KQ R I +++ ++++ E+ ID +++ IL +
Sbjct: 241 ALRDKIAQLAESRMGDAYRITEKQERYAQVDLIKEEVTAAIL-AEDENIDASEVADILAN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R +++ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKQVVRSRVIRGEPRIDGREKDMVRALDVRTGLLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE+TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+PN+
Sbjct: 360 RDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNHA 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGNDFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILGIMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINGPREEISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T V++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEVEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 660 EKVTDYLQMGQEVPVKVLEIDRQGRIRLSM 689
>gi|118594124|ref|ZP_01551471.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
bacterium HTCC2181]
gi|118439902|gb|EAV46529.1| polynucleotide phosphorylase/polyadenylase [Methylophilales
bacterium HTCC2181]
Length = 716
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/698 (55%), Positives = 520/698 (74%), Gaps = 2/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
+I +KG +FN + KS K+G ++IE GEI RQA +V+VS DTV+L T V K+
Sbjct: 1 MIKIKGKSMFNIVKKSVKFGDNTLTIETGEIGRQADGAVMVSYGDTVVLVTAVGNKNARE 60
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTVDY EK YAAG+IPG FFKREG+PSE+ET+ RLIDRP+RPLFP+ + NEIQ
Sbjct: 61 GQDFFPLTVDYQEKTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPLRPLFPKNFYNEIQ 120
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
IV V+S + +ID DI +IIG S AL+IS +PF GP+G ++VGYID K+++NPT QL
Sbjct: 121 IVATVMSSDSEIDSDIPAIIGASAALAISGIPFYGPVGASRVGYIDEKFVINPTKTQLVD 180
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAG++ A++ VESE+K+LPE ++L+A++ GH+ M+ I INE + + +
Sbjct: 181 SELDLVVAGSDAAVLMVESEAKELPEKVMLDAVLAGHKAMQPVIKMINEFAKEAAKDPWD 240
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI-DI 354
W +K L+SKI I+ + KA+ IK K R I KD + + NEN T ++
Sbjct: 241 WTAQETNKDLVSKIEKIAAKDLEKAFAIKAKGERSEKLSEI-KDKVLAEVANENTTPNEM 299
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
N I ++LESKI+R +ILD RID R +RPI IRTG+LPR HGS+LFTRG+TQA
Sbjct: 300 NAIKNEFFNLESKIVRNKILDGDPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQA 359
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
+VVATLGT RDEQ IDAL GEF D FMLHYN PP+ATG+ GR+G PKRREIGHG+LAKR
Sbjct: 360 IVVATLGTGRDEQIIDALQGEFKDRFMLHYNFPPYATGETGRVGTPKRREIGHGKLAKRG 419
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
L LP+ F+Y+IRLVSEITESNGSSSMAS+CGG +A++DAGVP+++HVAGIAMGLIK
Sbjct: 420 LSAALPSKEDFDYTIRLVSEITESNGSSSMASICGGTMAMMDAGVPMTDHVAGIAMGLIK 479
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+ +V +L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +A++G+
Sbjct: 480 EDNRVAVLTDILGDEDHLGDMDFKVAGTDNGITALQMDIKITGITSEIMQVALSQAREGI 539
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+IL+ MK + + E+S+FAP+++TIKI P KIRDVIGKGG+ I+ L ETG IDI+
Sbjct: 540 DHILKIMKKTLKAPRTEMSQFAPQILTIKIHPDKIRDVIGKGGAVIKGLAAETGATIDID 599
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
D+G++ +A N SGQ A RI+++T V++ +VY G V+++ DFGAI+ +L GKDGLLH
Sbjct: 600 DDGLVKVACTNGESGQAAIDRIKEITADVEVDQVYDGKVIKILDFGAIVSLLPGKDGLLH 659
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
ISQI+ +R+ + D L E +V+VKV+ +DD+GR+++S
Sbjct: 660 ISQIAHERIKAVKDHLSEGDEVKVKVIEVDDKGRVRVS 697
>gi|317046745|ref|YP_004114393.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
gi|316948362|gb|ADU67837.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. At-9b]
Length = 712
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 524/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT +++K+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L ED +L A++FGH++ ++ I IN LV G+ + +W P +
Sbjct: 181 GTQNAVLMVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPAND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+++ ++E +I AY+I +KQ R I + ++L+ E+ T+D +I I++
Sbjct: 241 PLIARVAALAEARISDAYRITDKQERYAQVGVIKDETIAALL-AEDETLDDAEIGDIVHS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL+ RID R + IR + +RTG+LPRTHGSSLFTRG+TQALV ATLGT+
Sbjct: 300 LEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQSLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI+ KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|300948813|ref|ZP_07162881.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
116-1]
gi|300451702|gb|EFK15322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
116-1]
Length = 734
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVLVKVLEVDRQGRIRLSI 712
>gi|217035382|pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
Length = 723
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 7 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 66
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 67 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 126
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 127 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 186
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 187 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 246
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 247 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 305
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 306 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 365
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 366 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 425
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 426 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 485
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 486 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 545
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 546 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 605
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 606 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 665
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 666 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 695
>gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
gi|188020161|gb|EDU58201.1| polyribonucleotide nucleotidyltransferase [Providencia stuartii
ATCC 25827]
Length = 722
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/695 (54%), Positives = 530/695 (76%), Gaps = 1/695 (0%)
Query: 59 MKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
+KG L N I++ F+YG + +SIE G IARQAT++V+V+++DT + T V+ K +
Sbjct: 11 IKGTILLNPIVRKFQYGQHTVSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQD 70
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTV+Y E++YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG+LNEIQI+
Sbjct: 71 FFPLTVNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIA 130
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
V+SVNPQ++PDI ++IG S AL++S +PF GP+G A+VG+I+ +Y+LNPT ++LK S L
Sbjct: 131 TVVSVNPQVNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRL 190
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGTE A++ VESE+ L E+ +L A++FGH++ +I I INELV+ G++K +W P
Sbjct: 191 DLVVAGTESAVLMVESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEKWDWQP 250
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDIN 358
++ L K+ ++E ++ AY+I KQ R I +++ ++++ E+ +D+ ++
Sbjct: 251 EPVNQALRDKVAALAESRMGDAYRITEKQERYEQVDLIKEEVTAAIV-AEDENVDVAEVA 309
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
IL +LE +++R +++ RID R + +R + +RT +LPRTHGS+LFTRG+TQALV A
Sbjct: 310 DILANLEKQVVRSRVIRGEPRIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTA 369
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT RD Q ID LMGE+TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR ++ V
Sbjct: 370 TLGTERDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAV 429
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
+P++ F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+
Sbjct: 430 MPDHADFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDD 489
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
V+LSDILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL
Sbjct: 490 FVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHIL 549
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
M+ + ++++S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G
Sbjct: 550 GTMEQAINSPRDDISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 609
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
+ IA+ + + +EA RRIE++T V++G+VY G V R+ DFGA + I GK+GL+HISQI
Sbjct: 610 VKIAATDGLKAKEAIRRIEEITAEVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQI 669
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ KRV +TD+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 670 ADKRVEKVTDYLQMGQEVPVKVLEIDRQGRIRLSM 704
>gi|331664778|ref|ZP_08365683.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
gi|422803970|ref|ZP_16852402.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii
B253]
gi|432776249|ref|ZP_20010512.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE54]
gi|324115230|gb|EGC09194.1| polyribonucleotide nucleotidyltransferase [Escherichia fergusonii
B253]
gi|331058026|gb|EGI30008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA143]
gi|431316416|gb|ELG04226.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE54]
Length = 721
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/694 (54%), Positives = 530/694 (76%), Gaps = 1/694 (0%)
Query: 60 KGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNF 119
KG L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +F
Sbjct: 7 KGITLLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDF 66
Query: 120 FPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVY 179
FPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++
Sbjct: 67 FPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIAT 126
Query: 180 VLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLD 239
V+SVNPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LD
Sbjct: 127 VVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 186
Query: 240 LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPI 299
L+VAGTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P
Sbjct: 187 LVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPE 246
Query: 300 VKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINC 359
++ L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++
Sbjct: 247 PVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGE 305
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV AT
Sbjct: 306 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 365
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+
Sbjct: 366 LGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 425
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+
Sbjct: 426 PDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY 485
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
V+LSDILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL
Sbjct: 486 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG 545
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M+ + + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G +
Sbjct: 546 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 605
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+
Sbjct: 606 KIAATDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIA 665
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
KRV +TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 666 DKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 699
>gi|332280005|ref|ZP_08392418.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
gi|332102357|gb|EGJ05703.1| polyribonucleotide nucleotidyltransferase [Shigella sp. D9]
Length = 740
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 30 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 89
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 90 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 149
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 150 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 209
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 210 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 269
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 270 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 328
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 329 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 388
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 389 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 448
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 449 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 508
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 509 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 568
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 569 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 628
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 629 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 688
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 689 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 718
>gi|432442657|ref|ZP_19684993.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE189]
gi|432447777|ref|ZP_19690074.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE191]
gi|433015472|ref|ZP_20203807.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE104]
gi|433025037|ref|ZP_20213011.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE106]
gi|433199916|ref|ZP_20383804.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE94]
gi|433325699|ref|ZP_20402758.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli J96]
gi|430964861|gb|ELC82307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE189]
gi|430971748|gb|ELC88757.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE191]
gi|431527362|gb|ELI04078.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE104]
gi|431532435|gb|ELI08991.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE106]
gi|431718450|gb|ELJ82524.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE94]
gi|432346181|gb|ELL40671.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli J96]
Length = 711
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+D E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLD-EDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|170082701|ref|YP_001732021.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. DH10B]
gi|254163108|ref|YP_003046216.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
REL606]
gi|254289858|ref|YP_003055606.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BL21(DE3)]
gi|300929854|ref|ZP_07145300.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
187-1]
gi|300955750|ref|ZP_07168095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
175-1]
gi|301644875|ref|ZP_07244847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
146-1]
gi|331643864|ref|ZP_08344995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
gi|387613856|ref|YP_006116972.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC
H10407]
gi|388479159|ref|YP_491351.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. W3110]
gi|606104|gb|AAA57967.1| polynucleotide phosphorylase [Escherichia coli str. K-12 substr.
MG1655]
gi|85675960|dbj|BAE77210.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K12 substr. W3110]
gi|169890536|gb|ACB04243.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. DH10B]
gi|253975009|gb|ACT40680.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli B str.
REL606]
gi|253979165|gb|ACT44835.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BL21(DE3)]
gi|300317383|gb|EFJ67167.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
175-1]
gi|300462216|gb|EFK25709.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
187-1]
gi|301076820|gb|EFK91626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
146-1]
gi|309703592|emb|CBJ02932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ETEC
H10407]
gi|331037335|gb|EGI09559.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H736]
gi|359333363|dbj|BAL39810.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. MDS42]
Length = 734
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|145698316|ref|NP_417633.4| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. MG1655]
gi|157162649|ref|YP_001459967.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HS]
gi|194438823|ref|ZP_03070909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
gi|238902268|ref|YP_002928064.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BW2952]
gi|253772000|ref|YP_003034831.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|297517605|ref|ZP_06935991.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli OP50]
gi|301025991|ref|ZP_07189473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
196-1]
gi|386282272|ref|ZP_10059925.1| polyribonucleotide nucleotidyltransferase [Escherichia sp. 4_1_40B]
gi|386594118|ref|YP_006090518.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1]
gi|386615952|ref|YP_006135618.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88]
gi|387622828|ref|YP_006130456.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1]
gi|387823500|ref|YP_003000740.2| polynucleotide phosphorylase monomer, subunit of polynucleotide
phosphorylase and degradosome [Escherichia coli
BL21(DE3)]
gi|404376545|ref|ZP_10981703.1| polyribonucleotide nucleotidyltransferase [Escherichia sp. 1_1_43]
gi|417271769|ref|ZP_12059118.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2.4168]
gi|417276289|ref|ZP_12063620.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.2303]
gi|417290743|ref|ZP_12078024.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B41]
gi|417614770|ref|ZP_12265225.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_EH250]
gi|417619767|ref|ZP_12270175.1| polyribonucleotide nucleotidyltransferase [Escherichia coli G58-1]
gi|417636259|ref|ZP_12286469.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_S1191]
gi|417945997|ref|ZP_12589223.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
XH140A]
gi|417977271|ref|ZP_12618057.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli XH001]
gi|418040936|ref|ZP_12679168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W26]
gi|418956451|ref|ZP_13508376.1| polyribonucleotide nucleotidyltransferase [Escherichia coli J53]
gi|419144240|ref|ZP_13688972.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6A]
gi|419150126|ref|ZP_13694775.1| pnp [Escherichia coli DEC6B]
gi|419155633|ref|ZP_13700190.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6C]
gi|419160987|ref|ZP_13705485.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6D]
gi|419166038|ref|ZP_13710491.1| pnp [Escherichia coli DEC6E]
gi|419176476|ref|ZP_13720288.1| pnp [Escherichia coli DEC7B]
gi|419810592|ref|ZP_14335472.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O32:H37 str. P4]
gi|419939343|ref|ZP_14456138.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 75]
gi|421774866|ref|ZP_16211477.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AD30]
gi|422767339|ref|ZP_16821065.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520]
gi|422787302|ref|ZP_16840040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489]
gi|422793207|ref|ZP_16845904.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007]
gi|422818333|ref|ZP_16866546.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M919]
gi|423702668|ref|ZP_17677100.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H730]
gi|425116712|ref|ZP_18518502.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0566]
gi|425274360|ref|ZP_18665758.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW15901]
gi|425284940|ref|ZP_18675970.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW00353]
gi|432366623|ref|ZP_19609741.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE10]
gi|432418691|ref|ZP_19661286.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE44]
gi|432528008|ref|ZP_19765085.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE233]
gi|432565531|ref|ZP_19802095.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE51]
gi|432577401|ref|ZP_19813851.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE56]
gi|432628801|ref|ZP_19864771.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE77]
gi|432638374|ref|ZP_19874240.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE81]
gi|432662378|ref|ZP_19898014.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE111]
gi|432686987|ref|ZP_19922278.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE156]
gi|432688442|ref|ZP_19923714.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE161]
gi|432705907|ref|ZP_19941003.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE171]
gi|432738652|ref|ZP_19973404.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE42]
gi|432877160|ref|ZP_20094958.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE154]
gi|432956925|ref|ZP_20148528.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE197]
gi|433049602|ref|ZP_20236940.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE120]
gi|442597233|ref|ZP_21015029.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|450250555|ref|ZP_21901641.1| polyribonucleotide nucleotidyltransferase [Escherichia coli S17]
gi|1172545|sp|P05055.3|PNP_ECOLI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610300|sp|A8A4Y0.1|PNP_ECOHS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096729|sp|B1XGX6.2|PNP_ECODH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|259534118|sp|C4ZSQ5.1|PNP_ECOBW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145693187|gb|AAC76198.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
K-12 substr. MG1655]
gi|157068329|gb|ABV07584.1| polyribonucleotide nucleotidyltransferase [Escherichia coli HS]
gi|194422295|gb|EDX38296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 101-1]
gi|226839954|gb|EEH71975.1| polyribonucleotide nucleotidyltransferase [Escherichia sp. 1_1_43]
gi|238862078|gb|ACR64076.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
BW2952]
gi|253323044|gb|ACT27646.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260447807|gb|ACX38229.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli DH1]
gi|299879886|gb|EFI88097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
196-1]
gi|313848762|emb|CAQ33499.2| polynucleotide phosphorylase monomer, subunit of polynucleotide
phosphorylase and degradosome [Escherichia coli
BL21(DE3)]
gi|315137752|dbj|BAJ44911.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli DH1]
gi|323936140|gb|EGB32434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1520]
gi|323961064|gb|EGB56679.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H489]
gi|323970271|gb|EGB65542.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA007]
gi|332345121|gb|AEE58455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNK88]
gi|342362314|gb|EGU26435.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
XH140A]
gi|344193082|gb|EGV47166.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli XH001]
gi|345360616|gb|EGW92785.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_EH250]
gi|345372897|gb|EGX04860.1| polyribonucleotide nucleotidyltransferase [Escherichia coli G58-1]
gi|345385977|gb|EGX15814.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_S1191]
gi|377990384|gb|EHV53545.1| pnp [Escherichia coli DEC6B]
gi|377991771|gb|EHV54921.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6A]
gi|377994595|gb|EHV57721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6C]
gi|378005240|gb|EHV68245.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC6D]
gi|378007936|gb|EHV70899.1| pnp [Escherichia coli DEC6E]
gi|378030637|gb|EHV93230.1| pnp [Escherichia coli DEC7B]
gi|383476181|gb|EID68128.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W26]
gi|384380245|gb|EIE38111.1| polyribonucleotide nucleotidyltransferase [Escherichia coli J53]
gi|385156576|gb|EIF18572.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O32:H37 str. P4]
gi|385538118|gb|EIF84983.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M919]
gi|385710160|gb|EIG47152.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H730]
gi|386120648|gb|EIG69272.1| polyribonucleotide nucleotidyltransferase [Escherichia sp. 4_1_40B]
gi|386235469|gb|EII67445.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2.4168]
gi|386241014|gb|EII77933.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.2303]
gi|386253065|gb|EIJ02755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B41]
gi|388407746|gb|EIL68110.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 75]
gi|408191013|gb|EKI16633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW15901]
gi|408199748|gb|EKI24938.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW00353]
gi|408459943|gb|EKJ83723.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AD30]
gi|408565277|gb|EKK41364.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0566]
gi|430891962|gb|ELC14483.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE10]
gi|430937081|gb|ELC57343.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE44]
gi|431060983|gb|ELD70303.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE233]
gi|431091062|gb|ELD96812.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE51]
gi|431113269|gb|ELE16939.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE56]
gi|431161131|gb|ELE61616.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE77]
gi|431169115|gb|ELE69344.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE81]
gi|431197456|gb|ELE96305.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE111]
gi|431219974|gb|ELF17362.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE156]
gi|431236491|gb|ELF31697.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE161]
gi|431241691|gb|ELF36127.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE171]
gi|431280115|gb|ELF71044.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE42]
gi|431418342|gb|ELH00746.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE154]
gi|431465397|gb|ELH45507.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE197]
gi|431562991|gb|ELI36234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE120]
gi|441654393|emb|CCQ00942.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|449315991|gb|EMD06116.1| polyribonucleotide nucleotidyltransferase [Escherichia coli S17]
Length = 711
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|15803706|ref|NP_289740.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. EDL933]
gi|15833299|ref|NP_312072.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai]
gi|74313701|ref|YP_312120.1| polynucleotide phosphorylase [Shigella sonnei Ss046]
gi|209920641|ref|YP_002294725.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli SE11]
gi|218696871|ref|YP_002404538.1| polynucleotide phosphorylase [Escherichia coli 55989]
gi|218701935|ref|YP_002409564.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
gi|260845979|ref|YP_003223757.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. 12009]
gi|291284540|ref|YP_003501358.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. CB9615]
gi|293416598|ref|ZP_06659237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
gi|300817584|ref|ZP_07097800.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
107-1]
gi|300823873|ref|ZP_07103997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
119-7]
gi|300904350|ref|ZP_07122203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
84-1]
gi|300926097|ref|ZP_07141915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
182-1]
gi|300938074|ref|ZP_07152852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
21-1]
gi|301301780|ref|ZP_07207914.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
124-1]
gi|301326413|ref|ZP_07219767.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
78-1]
gi|331669993|ref|ZP_08370838.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
gi|331679245|ref|ZP_08379917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
gi|387884350|ref|YP_006314652.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
Xuzhou21]
gi|415861790|ref|ZP_11535400.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
85-1]
gi|415875685|ref|ZP_11542364.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
79-10]
gi|422353706|ref|ZP_16434455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
117-3]
gi|427806367|ref|ZP_18973434.1| polynucleotide phosphorylase [Escherichia coli chi7122]
gi|427810958|ref|ZP_18978023.1| polynucleotide phosphorylase; cytidylate kinase activity
[Escherichia coli]
gi|12517775|gb|AAG58300.1|AE005545_2 polynucleotide phosphorylase; cytidylate kinase activity
[Escherichia coli O157:H7 str. EDL933]
gi|13363518|dbj|BAB37468.1| polynucleotide phosphorylase [Escherichia coli O157:H7 str. Sakai]
gi|73857178|gb|AAZ89885.1| polynucleotide phosphorylase [Shigella sonnei Ss046]
gi|209758378|gb|ACI77501.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758380|gb|ACI77502.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758382|gb|ACI77503.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758384|gb|ACI77504.1| polynucleotide phosphorylase [Escherichia coli]
gi|209758386|gb|ACI77505.1| polynucleotide phosphorylase [Escherichia coli]
gi|209913900|dbj|BAG78974.1| polynucleotide phosphorylase [Escherichia coli SE11]
gi|218353603|emb|CAU99791.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 55989]
gi|218371921|emb|CAR19777.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI39]
gi|257761126|dbj|BAI32623.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. 12009]
gi|290764413|gb|ADD58374.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. CB9615]
gi|291431954|gb|EFF04937.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B185]
gi|300403701|gb|EFJ87239.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
84-1]
gi|300417862|gb|EFK01173.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
182-1]
gi|300456934|gb|EFK20427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
21-1]
gi|300523641|gb|EFK44710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
119-7]
gi|300529882|gb|EFK50944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
107-1]
gi|300842761|gb|EFK70521.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
124-1]
gi|300846902|gb|EFK74662.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
78-1]
gi|315257090|gb|EFU37058.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
85-1]
gi|324018312|gb|EGB87531.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
117-3]
gi|331062906|gb|EGI34820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA271]
gi|331073310|gb|EGI44633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H591]
gi|342929205|gb|EGU97927.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
79-10]
gi|386797808|gb|AFJ30842.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
Xuzhou21]
gi|412964549|emb|CCK48478.1| polynucleotide phosphorylase [Escherichia coli chi7122]
gi|412971137|emb|CCJ45792.1| polynucleotide phosphorylase; cytidylate kinase activity
[Escherichia coli]
Length = 734
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|417691544|ref|ZP_12340754.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82]
gi|332086104|gb|EGI91266.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 5216-82]
Length = 711
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|157158403|ref|YP_001464640.1| polynucleotide phosphorylase [Escherichia coli E24377A]
gi|187775793|ref|ZP_02798176.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4196]
gi|188024828|ref|ZP_02774262.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4113]
gi|188495596|ref|ZP_03002866.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
gi|189010332|ref|ZP_02806314.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4076]
gi|189401923|ref|ZP_02779152.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4401]
gi|189403294|ref|ZP_02794589.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4486]
gi|189404087|ref|ZP_02787137.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4501]
gi|189404797|ref|ZP_02811056.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC869]
gi|189405568|ref|ZP_02822772.2| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC508]
gi|193061952|ref|ZP_03043048.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
gi|194427762|ref|ZP_03060309.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
gi|194433724|ref|ZP_03065999.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1012]
gi|195938384|ref|ZP_03083766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. EC4024]
gi|208809595|ref|ZP_03251932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4206]
gi|208812895|ref|ZP_03254224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4045]
gi|208818367|ref|ZP_03258687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4042]
gi|209397723|ref|YP_002272635.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. EC4115]
gi|217327602|ref|ZP_03443685.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. TW14588]
gi|254795115|ref|YP_003079952.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. TW14359]
gi|261228176|ref|ZP_05942457.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. FRIK2000]
gi|261255032|ref|ZP_05947565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. FRIK966]
gi|293449501|ref|ZP_06663922.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
gi|307313129|ref|ZP_07592755.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
gi|378711379|ref|YP_005276272.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11FL]
gi|383180344|ref|YP_005458349.1| polynucleotide phosphorylase/polyadenylase [Shigella sonnei 53G]
gi|386610555|ref|YP_006126041.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
gi|386625972|ref|YP_006145700.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O7:K1
str. CE10]
gi|386699866|ref|YP_006163703.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
KO11FL]
gi|386711073|ref|YP_006174794.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
gi|387508569|ref|YP_006160825.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. RM12579]
gi|407471140|ref|YP_006782417.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407480203|ref|YP_006777352.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410480764|ref|YP_006768310.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|414577952|ref|ZP_11435126.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 3233-85]
gi|415795643|ref|ZP_11497156.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E128010]
gi|415851003|ref|ZP_11527798.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G]
gi|416281380|ref|ZP_11645776.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC
9905]
gi|416308475|ref|ZP_11655151.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1044]
gi|416322338|ref|ZP_11664186.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC1212]
gi|416332575|ref|ZP_11670486.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1125]
gi|416341089|ref|ZP_11675810.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
EC4100B]
gi|416777664|ref|ZP_11875315.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. G5101]
gi|416789058|ref|ZP_11880240.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. 493-89]
gi|416800967|ref|ZP_11885145.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. H 2687]
gi|416811599|ref|ZP_11889956.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. 3256-97]
gi|416822107|ref|ZP_11894614.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. USDA 5905]
gi|416832499|ref|ZP_11899710.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. LSU-61]
gi|417146725|ref|ZP_11987572.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1.2264]
gi|417156731|ref|ZP_11994355.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0497]
gi|417163199|ref|ZP_11998529.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0741]
gi|417175188|ref|ZP_12004984.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.2608]
gi|417184131|ref|ZP_12009823.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0624]
gi|417222439|ref|ZP_12025879.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 96.154]
gi|417229171|ref|ZP_12030929.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.0959]
gi|417249518|ref|ZP_12041302.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 4.0967]
gi|417268375|ref|ZP_12055736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.3884]
gi|417582782|ref|ZP_12233583.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_B2F1]
gi|417598574|ref|ZP_12249202.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3030-1]
gi|417604049|ref|ZP_12254614.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_94C]
gi|417609855|ref|ZP_12260353.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_DG131-3]
gi|417625250|ref|ZP_12275543.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_H.1.8]
gi|417630620|ref|ZP_12280855.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_MHI813]
gi|417641068|ref|ZP_12291203.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TX1999]
gi|417668653|ref|ZP_12318194.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_O31]
gi|417806813|ref|ZP_12453745.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. LB226692]
gi|417834559|ref|ZP_12481001.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 01-09591]
gi|417865981|ref|ZP_12511024.1| pnp [Escherichia coli O104:H4 str. C227-11]
gi|418268639|ref|ZP_12887308.1| pnp [Shigella sonnei str. Moseley]
gi|418941583|ref|ZP_13494905.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H43 str. T22]
gi|419047171|ref|ZP_13594105.1| pnp [Escherichia coli DEC3A]
gi|419052942|ref|ZP_13599809.1| pnp [Escherichia coli DEC3B]
gi|419058939|ref|ZP_13605741.1| pnp [Escherichia coli DEC3C]
gi|419064437|ref|ZP_13611159.1| pnp [Escherichia coli DEC3D]
gi|419071386|ref|ZP_13616999.1| pnp [Escherichia coli DEC3E]
gi|419077339|ref|ZP_13622842.1| pnp [Escherichia coli DEC3F]
gi|419082415|ref|ZP_13627861.1| pnp [Escherichia coli DEC4A]
gi|419088243|ref|ZP_13633595.1| pnp [Escherichia coli DEC4B]
gi|419094202|ref|ZP_13639482.1| pnp [Escherichia coli DEC4C]
gi|419100062|ref|ZP_13645254.1| pnp [Escherichia coli DEC4D]
gi|419105789|ref|ZP_13650914.1| pnp [Escherichia coli DEC4E]
gi|419111214|ref|ZP_13656266.1| pnp [Escherichia coli DEC4F]
gi|419116712|ref|ZP_13661724.1| pnp [Escherichia coli DEC5A]
gi|419122428|ref|ZP_13667371.1| pnp [Escherichia coli DEC5B]
gi|419127847|ref|ZP_13672722.1| pnp [Escherichia coli DEC5C]
gi|419133276|ref|ZP_13678104.1| pnp [Escherichia coli DEC5D]
gi|419138432|ref|ZP_13683223.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC5E]
gi|419172007|ref|ZP_13715888.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC7A]
gi|419182570|ref|ZP_13726180.1| pnp [Escherichia coli DEC7C]
gi|419188189|ref|ZP_13731696.1| pnp [Escherichia coli DEC7D]
gi|419193315|ref|ZP_13736762.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC7E]
gi|419279811|ref|ZP_13822054.1| pnp [Escherichia coli DEC10E]
gi|419291365|ref|ZP_13833451.1| pnp [Escherichia coli DEC11A]
gi|419296651|ref|ZP_13838690.1| pnp [Escherichia coli DEC11B]
gi|419302168|ref|ZP_13844161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11C]
gi|419308151|ref|ZP_13850046.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11D]
gi|419313187|ref|ZP_13855046.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11E]
gi|419318616|ref|ZP_13860415.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC12A]
gi|419324884|ref|ZP_13866572.1| pnp [Escherichia coli DEC12B]
gi|419330820|ref|ZP_13872418.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC12C]
gi|419336310|ref|ZP_13877828.1| pnp [Escherichia coli DEC12D]
gi|419341723|ref|ZP_13883179.1| pnp [Escherichia coli DEC12E]
gi|419346916|ref|ZP_13888287.1| pnp [Escherichia coli DEC13A]
gi|419351383|ref|ZP_13892714.1| pnp [Escherichia coli DEC13B]
gi|419356856|ref|ZP_13898104.1| pnp [Escherichia coli DEC13C]
gi|419361836|ref|ZP_13903047.1| pnp [Escherichia coli DEC13D]
gi|419371742|ref|ZP_13912852.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC14A]
gi|419377237|ref|ZP_13918257.1| pnp [Escherichia coli DEC14B]
gi|419387864|ref|ZP_13928734.1| pnp [Escherichia coli DEC14D]
gi|419805324|ref|ZP_14330463.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AI27]
gi|419866820|ref|ZP_14389169.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H25 str. CVM9340]
gi|419868273|ref|ZP_14390565.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. CVM9450]
gi|419947960|ref|ZP_14464268.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli CUMT8]
gi|420271563|ref|ZP_14773916.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA22]
gi|420277210|ref|ZP_14779491.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA40]
gi|420282023|ref|ZP_14784256.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW06591]
gi|420288420|ref|ZP_14790604.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10246]
gi|420294284|ref|ZP_14796398.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW11039]
gi|420300137|ref|ZP_14802182.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09109]
gi|420305988|ref|ZP_14807977.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10119]
gi|420311415|ref|ZP_14813344.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1738]
gi|420317102|ref|ZP_14818975.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1734]
gi|420360519|ref|ZP_14861474.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 3226-85]
gi|420365054|ref|ZP_14865923.1| pnp [Shigella sonnei 4822-66]
gi|420387419|ref|ZP_14886760.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EPECa12]
gi|420393283|ref|ZP_14892529.1| pnp [Escherichia coli EPEC C342-62]
gi|421814202|ref|ZP_16249909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0416]
gi|421819998|ref|ZP_16255485.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0821]
gi|421826010|ref|ZP_16261364.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK920]
gi|421832726|ref|ZP_16268008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA7]
gi|422760635|ref|ZP_16814395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167]
gi|422770957|ref|ZP_16824647.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482]
gi|422775580|ref|ZP_16829235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120]
gi|422959939|ref|ZP_16971574.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H494]
gi|422989369|ref|ZP_16980141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. C227-11]
gi|422996264|ref|ZP_16987027.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. C236-11]
gi|423001413|ref|ZP_16992166.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 09-7901]
gi|423005073|ref|ZP_16995818.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 04-8351]
gi|423011578|ref|ZP_17002311.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-3677]
gi|423020806|ref|ZP_17011513.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4404]
gi|423025971|ref|ZP_17016666.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4522]
gi|423031790|ref|ZP_17022476.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4623]
gi|423034662|ref|ZP_17025340.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C1]
gi|423039790|ref|ZP_17030459.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C2]
gi|423046474|ref|ZP_17037133.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C3]
gi|423055011|ref|ZP_17043817.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C4]
gi|423057003|ref|ZP_17045802.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C5]
gi|423727123|ref|ZP_17701037.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA31]
gi|424079328|ref|ZP_17816296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA505]
gi|424085784|ref|ZP_17822271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA517]
gi|424098856|ref|ZP_17834132.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1985]
gi|424111716|ref|ZP_17845946.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 93-001]
gi|424117653|ref|ZP_17851487.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA3]
gi|424123842|ref|ZP_17857149.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA5]
gi|424129993|ref|ZP_17862896.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA9]
gi|424142869|ref|ZP_17874736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA14]
gi|424149270|ref|ZP_17880641.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA15]
gi|424155120|ref|ZP_17886052.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA24]
gi|424253719|ref|ZP_17891599.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA25]
gi|424332506|ref|ZP_17897503.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA28]
gi|424451555|ref|ZP_17903225.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA32]
gi|424457745|ref|ZP_17908855.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA33]
gi|424464202|ref|ZP_17914579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA39]
gi|424470507|ref|ZP_17920319.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA41]
gi|424477015|ref|ZP_17926328.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA42]
gi|424482771|ref|ZP_17931747.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW07945]
gi|424488954|ref|ZP_17937500.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09098]
gi|424495606|ref|ZP_17943229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09195]
gi|424502306|ref|ZP_17949193.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4203]
gi|424508559|ref|ZP_17954943.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4196]
gi|424515909|ref|ZP_17960544.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW14313]
gi|424522111|ref|ZP_17966223.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW14301]
gi|424527988|ref|ZP_17971700.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4421]
gi|424534134|ref|ZP_17977478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4422]
gi|424540187|ref|ZP_17983127.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4013]
gi|424546315|ref|ZP_17988684.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4402]
gi|424552538|ref|ZP_17994379.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4439]
gi|424558728|ref|ZP_18000134.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4436]
gi|424565065|ref|ZP_18006064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4437]
gi|424571193|ref|ZP_18011738.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4448]
gi|424577349|ref|ZP_18017399.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1845]
gi|424583169|ref|ZP_18022812.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1863]
gi|425105939|ref|ZP_18508253.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.2239]
gi|425111952|ref|ZP_18513869.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 6.0172]
gi|425127875|ref|ZP_18529039.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0586]
gi|425133618|ref|ZP_18534464.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.2524]
gi|425140194|ref|ZP_18540572.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0833]
gi|425145907|ref|ZP_18545898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0869]
gi|425152022|ref|ZP_18551633.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.0221]
gi|425157894|ref|ZP_18557154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA34]
gi|425164247|ref|ZP_18563130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA506]
gi|425169990|ref|ZP_18568459.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA507]
gi|425188358|ref|ZP_18585627.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1997]
gi|425195124|ref|ZP_18591890.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE1487]
gi|425213739|ref|ZP_18609135.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA4]
gi|425219861|ref|ZP_18614820.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA23]
gi|425226411|ref|ZP_18620874.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA49]
gi|425232668|ref|ZP_18626704.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA45]
gi|425238592|ref|ZP_18632308.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TT12B]
gi|425244828|ref|ZP_18638130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MA6]
gi|425251019|ref|ZP_18643958.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5905]
gi|425256806|ref|ZP_18649314.1| polyribonucleotide nucleotidyltransferase [Escherichia coli CB7326]
gi|425263057|ref|ZP_18655056.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EC96038]
gi|425269054|ref|ZP_18660681.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5412]
gi|425296509|ref|ZP_18686673.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA38]
gi|425313197|ref|ZP_18702372.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1735]
gi|425319181|ref|ZP_18707965.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1736]
gi|425325273|ref|ZP_18713626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1737]
gi|425331640|ref|ZP_18719474.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1846]
gi|425337821|ref|ZP_18725174.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1847]
gi|425349937|ref|ZP_18736401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1849]
gi|425356238|ref|ZP_18742302.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1850]
gi|425362200|ref|ZP_18747844.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1856]
gi|425368418|ref|ZP_18753538.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1862]
gi|425387623|ref|ZP_18771178.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1866]
gi|425394274|ref|ZP_18777379.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1868]
gi|425400416|ref|ZP_18783117.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1869]
gi|425406503|ref|ZP_18788721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1870]
gi|425412889|ref|ZP_18794648.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE098]
gi|425419203|ref|ZP_18800468.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK523]
gi|425430476|ref|ZP_18811081.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 0.1304]
gi|428948909|ref|ZP_19021181.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.1467]
gi|428954983|ref|ZP_19026775.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.1042]
gi|428960971|ref|ZP_19032262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
89.0511]
gi|428967588|ref|ZP_19038296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.0091]
gi|428973338|ref|ZP_19043660.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.0039]
gi|428979781|ref|ZP_19049597.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.2281]
gi|428985587|ref|ZP_19054976.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0055]
gi|428991703|ref|ZP_19060687.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0056]
gi|428997591|ref|ZP_19066181.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
94.0618]
gi|429003859|ref|ZP_19071956.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0183]
gi|429009958|ref|ZP_19077412.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.1288]
gi|429016480|ref|ZP_19083358.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0943]
gi|429022332|ref|ZP_19088848.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0428]
gi|429028379|ref|ZP_19094368.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0427]
gi|429034554|ref|ZP_19100072.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0939]
gi|429040639|ref|ZP_19105735.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0932]
gi|429046591|ref|ZP_19111299.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0107]
gi|429051910|ref|ZP_19116472.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0003]
gi|429057360|ref|ZP_19121646.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.1742]
gi|429062861|ref|ZP_19126849.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0007]
gi|429075035|ref|ZP_19138283.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0678]
gi|429080235|ref|ZP_19143367.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0713]
gi|429720834|ref|ZP_19255756.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9450]
gi|429772732|ref|ZP_19304750.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02030]
gi|429778098|ref|ZP_19310066.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02033-1]
gi|429786404|ref|ZP_19318297.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02092]
gi|429787348|ref|ZP_19319238.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02093]
gi|429793144|ref|ZP_19324990.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02281]
gi|429799723|ref|ZP_19331517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02318]
gi|429803339|ref|ZP_19335097.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02913]
gi|429807980|ref|ZP_19339700.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-03439]
gi|429813679|ref|ZP_19345356.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-04080]
gi|429818890|ref|ZP_19350522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-03943]
gi|429828277|ref|ZP_19359296.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0109]
gi|429834712|ref|ZP_19365013.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0010]
gi|429905238|ref|ZP_19371215.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9990]
gi|429909374|ref|ZP_19375337.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9941]
gi|429915246|ref|ZP_19381192.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4984]
gi|429920292|ref|ZP_19386220.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-5604]
gi|429926096|ref|ZP_19392008.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4986]
gi|429930031|ref|ZP_19395932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4987]
gi|429936570|ref|ZP_19402455.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4988]
gi|429942251|ref|ZP_19408124.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-5603]
gi|429944934|ref|ZP_19410795.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-6006]
gi|429952490|ref|ZP_19418335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec12-0465]
gi|429955845|ref|ZP_19421675.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec12-0466]
gi|432378354|ref|ZP_19621338.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE12]
gi|432482500|ref|ZP_19724451.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE210]
gi|432676292|ref|ZP_19911742.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE142]
gi|432681894|ref|ZP_19917253.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE143]
gi|432751641|ref|ZP_19986224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE29]
gi|432807428|ref|ZP_20041343.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE91]
gi|432810898|ref|ZP_20044757.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE101]
gi|432828803|ref|ZP_20062421.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE135]
gi|432836128|ref|ZP_20069661.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE136]
gi|432936354|ref|ZP_20135488.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE184]
gi|432949232|ref|ZP_20144155.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE196]
gi|432969234|ref|ZP_20158146.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE203]
gi|433044710|ref|ZP_20232197.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE117]
gi|433093554|ref|ZP_20279811.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE138]
gi|433131727|ref|ZP_20317157.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE163]
gi|433136411|ref|ZP_20321746.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE166]
gi|433195212|ref|ZP_20379191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE90]
gi|443619238|ref|YP_007383094.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O78]
gi|444926792|ref|ZP_21246067.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
09BKT078844]
gi|444932478|ref|ZP_21251499.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0814]
gi|444937904|ref|ZP_21256661.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0815]
gi|444943497|ref|ZP_21261998.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0816]
gi|444949001|ref|ZP_21267304.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0839]
gi|444954603|ref|ZP_21272681.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0848]
gi|444960074|ref|ZP_21277909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1753]
gi|444965319|ref|ZP_21282898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1775]
gi|444971258|ref|ZP_21288607.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1793]
gi|444976504|ref|ZP_21293607.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1805]
gi|444981944|ref|ZP_21298847.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
700728]
gi|444987303|ref|ZP_21304077.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA11]
gi|444992611|ref|ZP_21309251.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA19]
gi|444997897|ref|ZP_21314392.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA13]
gi|445003493|ref|ZP_21319878.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA2]
gi|445008865|ref|ZP_21325102.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA47]
gi|445014029|ref|ZP_21330131.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA48]
gi|445019906|ref|ZP_21335868.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA8]
gi|445025313|ref|ZP_21341132.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 7.1982]
gi|445030738|ref|ZP_21346403.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1781]
gi|445036169|ref|ZP_21351693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1762]
gi|445041790|ref|ZP_21357158.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA35]
gi|445047053|ref|ZP_21362298.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.4880]
gi|445052571|ref|ZP_21367595.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0083]
gi|445058268|ref|ZP_21373124.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0670]
gi|450222731|ref|ZP_21896886.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O08]
gi|452968173|ref|ZP_21966400.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. EC4009]
gi|187610299|sp|A7ZS61.1|PNP_ECO24 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610334|sp|Q8X9M3.2|PNP_ECO57 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611306|sp|Q3YX77.2|PNP_SHISS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702649|sp|B5YS54.1|PNP_ECO5E RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096725|sp|B7LH99.2|PNP_ECO55 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096726|sp|B7NKN3.2|PNP_ECO7I RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096731|sp|B6I1N9.2|PNP_ECOSE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157080433|gb|ABV20141.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E24377A]
gi|187770877|gb|EDU34721.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4196]
gi|188016356|gb|EDU54478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4113]
gi|188490795|gb|EDU65898.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 53638]
gi|189001076|gb|EDU70062.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4076]
gi|189358585|gb|EDU77004.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4401]
gi|189361407|gb|EDU79826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4486]
gi|189367622|gb|EDU86038.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4501]
gi|189374178|gb|EDU92594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC869]
gi|189379858|gb|EDU98274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC508]
gi|192932172|gb|EDV84770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E22]
gi|194414270|gb|EDX30545.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B171]
gi|194417987|gb|EDX34081.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1012]
gi|208729396|gb|EDZ78997.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4206]
gi|208734172|gb|EDZ82859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4045]
gi|208738490|gb|EDZ86172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4042]
gi|209159123|gb|ACI36556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC4115]
gi|217319969|gb|EEC28394.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. TW14588]
gi|254594515|gb|ACT73876.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. TW14359]
gi|291322591|gb|EFE62020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B088]
gi|306907040|gb|EFN37548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli W]
gi|315062472|gb|ADT76799.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
gi|320181440|gb|EFW56358.1| Polyribonucleotide nucleotidyltransferase [Shigella boydii ATCC
9905]
gi|320189518|gb|EFW64177.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. EC1212]
gi|320202078|gb|EFW76653.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
EC4100B]
gi|320640236|gb|EFX09808.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. G5101]
gi|320645533|gb|EFX14542.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. 493-89]
gi|320650843|gb|EFX19300.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H- str. H 2687]
gi|320656224|gb|EFX24136.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320661914|gb|EFX29322.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. USDA 5905]
gi|320666749|gb|EFX33728.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H7 str. LSU-61]
gi|323162858|gb|EFZ48693.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E128010]
gi|323165122|gb|EFZ50912.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 53G]
gi|323376940|gb|ADX49208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KO11FL]
gi|323941734|gb|EGB37913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E482]
gi|323946980|gb|EGB42996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H120]
gi|324119531|gb|EGC13413.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E1167]
gi|326337866|gb|EGD61700.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1125]
gi|326347435|gb|EGD71160.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli O157:H7
str. 1044]
gi|340732703|gb|EGR61839.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 01-09591]
gi|340738270|gb|EGR72519.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. LB226692]
gi|341919270|gb|EGT68882.1| pnp [Escherichia coli O104:H4 str. C227-11]
gi|345336239|gb|EGW68676.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_B2F1]
gi|345348075|gb|EGW80373.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_94C]
gi|345349732|gb|EGW82009.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3030-1]
gi|345355531|gb|EGW87741.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_DG131-3]
gi|345371021|gb|EGX02995.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_MHI813]
gi|345374453|gb|EGX06405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_H.1.8]
gi|345392232|gb|EGX22017.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TX1999]
gi|349739708|gb|AEQ14414.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O7:K1
str. CE10]
gi|354860529|gb|EHF20975.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. C236-11]
gi|354863847|gb|EHF24278.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. C227-11]
gi|354865761|gb|EHF26189.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 04-8351]
gi|354872185|gb|EHF32580.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 09-7901]
gi|354878528|gb|EHF38877.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-3677]
gi|354887071|gb|EHF47348.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4404]
gi|354890961|gb|EHF51197.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4522]
gi|354895376|gb|EHF55563.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4623]
gi|354906860|gb|EHF66931.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C1]
gi|354909883|gb|EHF69913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C2]
gi|354911968|gb|EHF71970.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C3]
gi|354914717|gb|EHF74699.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C4]
gi|354922065|gb|EHF81983.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-4632 C5]
gi|371594317|gb|EHN83185.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H494]
gi|374360563|gb|AEZ42270.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O55:H7
str. RM12579]
gi|375323083|gb|EHS68806.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O157:H43 str. T22]
gi|377891101|gb|EHU55554.1| pnp [Escherichia coli DEC3A]
gi|377891789|gb|EHU56241.1| pnp [Escherichia coli DEC3B]
gi|377903606|gb|EHU67897.1| pnp [Escherichia coli DEC3C]
gi|377907790|gb|EHU72013.1| pnp [Escherichia coli DEC3D]
gi|377909660|gb|EHU73860.1| pnp [Escherichia coli DEC3E]
gi|377919417|gb|EHU83460.1| pnp [Escherichia coli DEC3F]
gi|377924474|gb|EHU88421.1| pnp [Escherichia coli DEC4A]
gi|377928735|gb|EHU92645.1| pnp [Escherichia coli DEC4B]
gi|377939129|gb|EHV02886.1| pnp [Escherichia coli DEC4D]
gi|377939978|gb|EHV03730.1| pnp [Escherichia coli DEC4C]
gi|377945918|gb|EHV09608.1| pnp [Escherichia coli DEC4E]
gi|377955120|gb|EHV18677.1| pnp [Escherichia coli DEC4F]
gi|377958521|gb|EHV22034.1| pnp [Escherichia coli DEC5A]
gi|377963391|gb|EHV26838.1| pnp [Escherichia coli DEC5B]
gi|377971708|gb|EHV35062.1| pnp [Escherichia coli DEC5C]
gi|377972826|gb|EHV36171.1| pnp [Escherichia coli DEC5D]
gi|377982852|gb|EHV46104.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC5E]
gi|378013794|gb|EHV76711.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC7A]
gi|378021857|gb|EHV84552.1| pnp [Escherichia coli DEC7C]
gi|378025938|gb|EHV88578.1| pnp [Escherichia coli DEC7D]
gi|378036230|gb|EHV98774.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC7E]
gi|378125794|gb|EHW87192.1| pnp [Escherichia coli DEC10E]
gi|378127024|gb|EHW88416.1| pnp [Escherichia coli DEC11A]
gi|378139359|gb|EHX00599.1| pnp [Escherichia coli DEC11B]
gi|378145911|gb|EHX07066.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11D]
gi|378147872|gb|EHX09017.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11C]
gi|378156213|gb|EHX17265.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC11E]
gi|378162559|gb|EHX23519.1| pnp [Escherichia coli DEC12B]
gi|378166560|gb|EHX27482.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC12A]
gi|378167594|gb|EHX28506.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC12C]
gi|378180042|gb|EHX40744.1| pnp [Escherichia coli DEC12D]
gi|378184157|gb|EHX44794.1| pnp [Escherichia coli DEC12E]
gi|378184863|gb|EHX45499.1| pnp [Escherichia coli DEC13A]
gi|378197197|gb|EHX57680.1| pnp [Escherichia coli DEC13C]
gi|378197755|gb|EHX58231.1| pnp [Escherichia coli DEC13B]
gi|378200715|gb|EHX61169.1| pnp [Escherichia coli DEC13D]
gi|378214452|gb|EHX74759.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC14A]
gi|378216746|gb|EHX77030.1| pnp [Escherichia coli DEC14B]
gi|378229378|gb|EHX89519.1| pnp [Escherichia coli DEC14D]
gi|383391393|gb|AFH16351.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
KO11FL]
gi|383406765|gb|AFH13008.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W]
gi|384471665|gb|EIE55737.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AI27]
gi|386162665|gb|EIH24461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1.2264]
gi|386165481|gb|EIH32001.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0497]
gi|386173690|gb|EIH45702.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0741]
gi|386177880|gb|EIH55359.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.2608]
gi|386183693|gb|EIH66440.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0624]
gi|386202241|gb|EII01232.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 96.154]
gi|386208506|gb|EII13011.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.0959]
gi|386219839|gb|EII36303.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 4.0967]
gi|386230733|gb|EII58088.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.3884]
gi|388334082|gb|EIL00690.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H25 str. CVM9340]
gi|388345582|gb|EIL11352.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O103:H2 str. CVM9450]
gi|388422135|gb|EIL81724.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli CUMT8]
gi|390640540|gb|EIN19992.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA517]
gi|390640749|gb|EIN20194.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA505]
gi|390658272|gb|EIN36069.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1985]
gi|390658371|gb|EIN36166.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 93-001]
gi|390675339|gb|EIN51490.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA3]
gi|390678662|gb|EIN54608.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA5]
gi|390682276|gb|EIN58046.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA9]
gi|390698283|gb|EIN72668.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA14]
gi|390698921|gb|EIN73289.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA15]
gi|390712984|gb|EIN85928.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA22]
gi|390719734|gb|EIN92452.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA25]
gi|390721415|gb|EIN94110.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA24]
gi|390725479|gb|EIN97981.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA28]
gi|390739002|gb|EIO10195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA31]
gi|390739672|gb|EIO10833.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA32]
gi|390743145|gb|EIO14130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA33]
gi|390756807|gb|EIO26308.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA40]
gi|390763739|gb|EIO32966.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA39]
gi|390764920|gb|EIO34110.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA41]
gi|390766556|gb|EIO35675.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA42]
gi|390780184|gb|EIO47884.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW06591]
gi|390787469|gb|EIO54954.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW07945]
gi|390788982|gb|EIO56447.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10246]
gi|390794742|gb|EIO62032.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW11039]
gi|390802514|gb|EIO69550.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09098]
gi|390805758|gb|EIO72694.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09109]
gi|390814503|gb|EIO81067.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10119]
gi|390823900|gb|EIO89915.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4203]
gi|390825893|gb|EIO91779.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW09195]
gi|390828735|gb|EIO94372.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4196]
gi|390843251|gb|EIP07057.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW14313]
gi|390844083|gb|EIP07845.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW14301]
gi|390848853|gb|EIP12306.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4421]
gi|390859163|gb|EIP21517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4422]
gi|390863723|gb|EIP25854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4013]
gi|390868450|gb|EIP30201.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4402]
gi|390876494|gb|EIP37479.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4439]
gi|390881911|gb|EIP42463.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4436]
gi|390891584|gb|EIP51206.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4437]
gi|390893622|gb|EIP53162.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC4448]
gi|390898772|gb|EIP58033.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1738]
gi|390907359|gb|EIP66228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1734]
gi|390917179|gb|EIP75612.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1863]
gi|390918183|gb|EIP76594.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1845]
gi|391278592|gb|EIQ37293.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 3226-85]
gi|391282943|gb|EIQ41572.1| polyribonucleotide nucleotidyltransferase [Shigella sonnei 3233-85]
gi|391292556|gb|EIQ50877.1| pnp [Shigella sonnei 4822-66]
gi|391303210|gb|EIQ61051.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EPECa12]
gi|391310959|gb|EIQ68609.1| pnp [Escherichia coli EPEC C342-62]
gi|397783900|gb|EJK94757.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_O31]
gi|397896315|gb|EJL12734.1| pnp [Shigella sonnei str. Moseley]
gi|406775926|gb|AFS55350.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407052500|gb|AFS72551.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407067175|gb|AFS88222.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|408063097|gb|EKG97596.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA7]
gi|408065312|gb|EKG99787.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK920]
gi|408067676|gb|EKH02106.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA34]
gi|408077571|gb|EKH11770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA506]
gi|408081031|gb|EKH15065.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA507]
gi|408102300|gb|EKH34715.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1997]
gi|408106712|gb|EKH38805.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE1487]
gi|408125731|gb|EKH56321.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA4]
gi|408135750|gb|EKH65520.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA23]
gi|408138465|gb|EKH68134.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA49]
gi|408144799|gb|EKH74013.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA45]
gi|408153100|gb|EKH81504.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TT12B]
gi|408158204|gb|EKH86328.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MA6]
gi|408162185|gb|EKH90100.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5905]
gi|408171460|gb|EKH98575.1| polyribonucleotide nucleotidyltransferase [Escherichia coli CB7326]
gi|408178223|gb|EKI04944.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EC96038]
gi|408181506|gb|EKI08061.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5412]
gi|408214948|gb|EKI39354.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA38]
gi|408225160|gb|EKI48849.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1735]
gi|408236322|gb|EKI59226.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1736]
gi|408240058|gb|EKI62771.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1737]
gi|408244572|gb|EKI66992.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1846]
gi|408253327|gb|EKI74925.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1847]
gi|408263795|gb|EKI84623.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1849]
gi|408272403|gb|EKI92493.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1850]
gi|408275380|gb|EKI95342.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1856]
gi|408283651|gb|EKJ02799.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1862]
gi|408305464|gb|EKJ22857.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1868]
gi|408306057|gb|EKJ23434.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1866]
gi|408316936|gb|EKJ33186.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1869]
gi|408322536|gb|EKJ38515.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1870]
gi|408324789|gb|EKJ40710.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE098]
gi|408334907|gb|EKJ49772.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK523]
gi|408344341|gb|EKJ58711.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 0.1304]
gi|408547170|gb|EKK24569.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.2239]
gi|408548620|gb|EKK26002.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 6.0172]
gi|408565585|gb|EKK41668.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0586]
gi|408577366|gb|EKK52941.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0833]
gi|408579634|gb|EKK55086.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.2524]
gi|408589513|gb|EKK64023.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0869]
gi|408595037|gb|EKK69305.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.0221]
gi|408599735|gb|EKK73624.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0416]
gi|408610442|gb|EKK83813.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
10.0821]
gi|427202530|gb|EKV72854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.1042]
gi|427203882|gb|EKV74178.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
89.0511]
gi|427206440|gb|EKV76652.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
88.1467]
gi|427218844|gb|EKV87824.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.0091]
gi|427222383|gb|EKV91166.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.2281]
gi|427225633|gb|EKV94258.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
90.0039]
gi|427239646|gb|EKW07124.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0056]
gi|427240042|gb|EKW07509.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
93.0055]
gi|427243903|gb|EKW11251.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
94.0618]
gi|427258368|gb|EKW24458.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0183]
gi|427259261|gb|EKW25320.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0943]
gi|427261883|gb|EKW27799.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.1288]
gi|427274568|gb|EKW39216.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0428]
gi|427277185|gb|EKW41727.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0427]
gi|427281514|gb|EKW45824.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0939]
gi|427289940|gb|EKW53439.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0932]
gi|427297030|gb|EKW60074.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0107]
gi|427298779|gb|EKW61773.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0003]
gi|427309750|gb|EKW72045.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.1742]
gi|427312943|gb|EKW75079.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0007]
gi|427326121|gb|EKW87547.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0678]
gi|427327495|gb|EKW88882.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0713]
gi|429251918|gb|EKY36480.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
96.0109]
gi|429253374|gb|EKY37862.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0010]
gi|429346576|gb|EKY83355.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02092]
gi|429356555|gb|EKY93230.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02033-1]
gi|429357430|gb|EKY94103.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02030]
gi|429372722|gb|EKZ09271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02093]
gi|429374663|gb|EKZ11202.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02281]
gi|429378345|gb|EKZ14859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02318]
gi|429388525|gb|EKZ24950.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-02913]
gi|429391294|gb|EKZ27698.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-03439]
gi|429392303|gb|EKZ28704.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-03943]
gi|429402792|gb|EKZ39082.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. 11-04080]
gi|429403988|gb|EKZ40268.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9990]
gi|429407651|gb|EKZ43902.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9450]
gi|429415098|gb|EKZ51268.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4984]
gi|429418552|gb|EKZ54695.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4986]
gi|429424819|gb|EKZ60917.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4987]
gi|429429009|gb|EKZ65080.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-4988]
gi|429433672|gb|EKZ69703.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-5603]
gi|429435216|gb|EKZ71235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-6006]
gi|429440958|gb|EKZ76932.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-5604]
gi|429445896|gb|EKZ81835.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec12-0465]
gi|429455661|gb|EKZ91516.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec12-0466]
gi|429459376|gb|EKZ95195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli O104:H4
str. Ec11-9941]
gi|430896466|gb|ELC18701.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE12]
gi|431005002|gb|ELD20211.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE210]
gi|431211973|gb|ELF09924.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE142]
gi|431218064|gb|ELF15548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE143]
gi|431294817|gb|ELF84996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE29]
gi|431353870|gb|ELG40623.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE91]
gi|431360638|gb|ELG47240.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE101]
gi|431382875|gb|ELG67018.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE136]
gi|431383657|gb|ELG67781.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE135]
gi|431451367|gb|ELH31843.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE184]
gi|431455864|gb|ELH36219.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE196]
gi|431468944|gb|ELH48877.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE203]
gi|431554455|gb|ELI28336.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE117]
gi|431608204|gb|ELI77552.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE138]
gi|431644464|gb|ELJ12126.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE163]
gi|431654436|gb|ELJ21491.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE166]
gi|431713918|gb|ELJ78126.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE90]
gi|443423746|gb|AGC88650.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O78]
gi|444536125|gb|ELV16157.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0814]
gi|444537877|gb|ELV17785.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
09BKT078844]
gi|444546303|gb|ELV25056.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0815]
gi|444555767|gb|ELV33211.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0839]
gi|444556083|gb|ELV33514.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0816]
gi|444561131|gb|ELV38263.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0848]
gi|444570340|gb|ELV46871.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1753]
gi|444574297|gb|ELV50615.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1775]
gi|444577503|gb|ELV53628.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1793]
gi|444590768|gb|ELV66067.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA11]
gi|444591002|gb|ELV66299.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
700728]
gi|444591821|gb|ELV67083.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1805]
gi|444604585|gb|ELV79250.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA13]
gi|444605633|gb|ELV80274.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA19]
gi|444613774|gb|ELV88024.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA2]
gi|444621452|gb|ELV95428.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA47]
gi|444622050|gb|ELV96015.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA48]
gi|444628281|gb|ELW02025.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA8]
gi|444636328|gb|ELW09729.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 7.1982]
gi|444638824|gb|ELW12149.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1781]
gi|444643334|gb|ELW16492.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.1762]
gi|444652792|gb|ELW25541.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA35]
gi|444658123|gb|ELW30585.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.4880]
gi|444661233|gb|ELW33560.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
95.0083]
gi|444668265|gb|ELW40287.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0670]
gi|449314693|gb|EMD04855.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O08]
Length = 711
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|82545596|ref|YP_409543.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii Sb227]
gi|81247007|gb|ABB67715.1| polynucleotide phosphorylase [Shigella boydii Sb227]
Length = 734
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR++L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|366160415|ref|ZP_09460277.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
TW09308]
gi|432373741|ref|ZP_19616773.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE11]
gi|430893926|gb|ELC16228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE11]
Length = 711
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED++L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDVMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|417245318|ref|ZP_12039057.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 9.0111]
gi|386210639|gb|EII21113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 9.0111]
Length = 711
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGRERDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|329295924|ref|ZP_08253260.1| polynucleotide phosphorylase/polyadenylase [Plautia stali symbiont]
Length = 710
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K + +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVITTVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT +++K+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L ED +L A++FGH++ ++ I IN LV G+ + +W P +
Sbjct: 181 GTQNAVLIVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPAND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+++ ++E +I AY+I +KQ R I + ++L+ E+ T+D +I I++
Sbjct: 241 ALIARVAALAEARISDAYRITDKQERYAQVGVIKDETIAALL-AEDETLDDAEIGDIVHS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL+ RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PPF+ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNLDELMGERTDSFLFHYNFPPFSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI+ KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRQEISEFAPRIYTIKINTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 689
>gi|193067267|ref|ZP_03048235.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E110019]
gi|192959224|gb|EDV89659.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
E110019]
Length = 711
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKKAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|416294212|ref|ZP_11650711.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC
796-83]
gi|420327325|ref|ZP_14829070.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
CCH060]
gi|420354715|ref|ZP_14855796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 4444-74]
gi|421684327|ref|ZP_16124115.1| pnp [Shigella flexneri 1485-80]
gi|187611310|sp|Q31W43.2|PNP_SHIBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|320186653|gb|EFW61377.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri CDC
796-83]
gi|391248087|gb|EIQ07331.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
CCH060]
gi|391274984|gb|EIQ33783.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 4444-74]
gi|404336685|gb|EJZ63144.1| pnp [Shigella flexneri 1485-80]
Length = 711
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR++L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|336247349|ref|YP_004591059.1| polynucleotide phosphorylase/polyadenylase [Enterobacter aerogenes
KCTC 2190]
gi|444354538|ref|YP_007390682.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
[Enterobacter aerogenes EA1509E]
gi|334733405|gb|AEG95780.1| polynucleotide phosphorylase/polyadenylase [Enterobacter aerogenes
KCTC 2190]
gi|443905368|emb|CCG33142.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
[Enterobacter aerogenes EA1509E]
Length = 711
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I IN+LV+ G+ + +W P V D
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTID 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|218555736|ref|YP_002388649.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
gi|218362504|emb|CAR00128.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli IAI1]
Length = 734
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/691 (55%), Positives = 530/691 (76%), Gaps = 3/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI-SKDIYSSLIDNENLTIDINDINCILY 362
L +++ ++E ++ AY+I +KQ R I S+ I + L ++ENL D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDENL--DENELGEILH 321
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 322 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 381
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+
Sbjct: 382 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 441
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 442 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 501
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 502 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 561
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA
Sbjct: 562 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 621
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KR
Sbjct: 622 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 681
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 682 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|432535510|ref|ZP_19772474.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE234]
gi|431058590|gb|ELD67983.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE234]
Length = 711
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|30064504|ref|NP_838675.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 2a
str. 2457T]
gi|56480278|ref|NP_708965.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301]
gi|260857293|ref|YP_003231184.1| polynucleotide phosphorylase [Escherichia coli O26:H11 str. 11368]
gi|260869916|ref|YP_003236318.1| polynucleotide phosphorylase [Escherichia coli O111:H- str. 11128]
gi|309793742|ref|ZP_07688168.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
145-7]
gi|384544761|ref|YP_005728825.1| polynucleotide phosphorylase [Shigella flexneri 2002017]
gi|30042763|gb|AAP18486.1| polynucleotide phosphorylase [Shigella flexneri 2a str. 2457T]
gi|56383829|gb|AAN44672.2| polynucleotide phosphorylase [Shigella flexneri 2a str. 301]
gi|257755942|dbj|BAI27444.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. 11368]
gi|257766272|dbj|BAI37767.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H- str. 11128]
gi|281602548|gb|ADA75532.1| Polynucleotide phosphorylase [Shigella flexneri 2002017]
gi|308122699|gb|EFO59961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
145-7]
Length = 734
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|420349120|ref|ZP_14850501.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 965-58]
gi|391267306|gb|EIQ26243.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 965-58]
Length = 711
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQAVPVKVLEVDRQGRIRLSI 689
>gi|432865078|ref|ZP_20088326.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE146]
gi|431402835|gb|ELG86140.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE146]
Length = 711
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++YTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|432486934|ref|ZP_19728844.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE212]
gi|432672263|ref|ZP_19907787.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE119]
gi|433175058|ref|ZP_20359572.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE232]
gi|431014621|gb|ELD28329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE212]
gi|431208493|gb|ELF06706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE119]
gi|431689828|gb|ELJ55323.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE232]
Length = 711
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L + + ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNAHVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|170018584|ref|YP_001723538.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ATCC
8739]
gi|189037305|sp|B1IQV7.1|PNP_ECOLC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169753512|gb|ACA76211.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli ATCC
8739]
Length = 711
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGIMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|300918919|ref|ZP_07135478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
115-1]
gi|300413945|gb|EFJ97255.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
115-1]
Length = 734
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAQLLSEDQMLCAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|261342610|ref|ZP_05970468.1| polyribonucleotide nucleotidyltransferase [Enterobacter
cancerogenus ATCC 35316]
gi|288315257|gb|EFC54195.1| polyribonucleotide nucleotidyltransferase [Enterobacter
cancerogenus ATCC 35316]
Length = 711
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ +I I IN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I ++ ++L+ E+ T+D N+I IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSEVTATLV-AEDETLDANEIGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRVYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|110807033|ref|YP_690553.1| polynucleotide phosphorylase [Shigella flexneri 5 str. 8401]
gi|191168040|ref|ZP_03029840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
gi|415787444|ref|ZP_11494072.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EPECa14]
gi|415811201|ref|ZP_11503551.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68]
gi|415820752|ref|ZP_11509859.1| polyribonucleotide nucleotidyltransferase [Escherichia coli OK1180]
gi|415857266|ref|ZP_11532040.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a
str. 2457T]
gi|416266918|ref|ZP_11641756.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC
74-1112]
gi|417123540|ref|ZP_11972450.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0246]
gi|417197543|ref|ZP_12016477.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 4.0522]
gi|417210773|ref|ZP_12021190.1| polyribonucleotide nucleotidyltransferase [Escherichia coli JB1-95]
gi|417296033|ref|ZP_12083280.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 900105
(10e)]
gi|417593566|ref|ZP_12244257.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2534-86]
gi|417703844|ref|ZP_12352948.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218]
gi|417709255|ref|ZP_12358280.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6]
gi|417714221|ref|ZP_12363179.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272]
gi|417719068|ref|ZP_12367959.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227]
gi|417724899|ref|ZP_12373695.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304]
gi|417730126|ref|ZP_12378817.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671]
gi|417735039|ref|ZP_12383686.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
2747-71]
gi|417740035|ref|ZP_12388607.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
4343-70]
gi|417745079|ref|ZP_12393600.1| pnp [Shigella flexneri 2930-71]
gi|417829643|ref|ZP_12476188.1| pnp [Shigella flexneri J1713]
gi|418258673|ref|ZP_12881869.1| pnp [Shigella flexneri 6603-63]
gi|419198868|ref|ZP_13742163.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC8A]
gi|419205008|ref|ZP_13748181.1| pnp [Escherichia coli DEC8B]
gi|419211619|ref|ZP_13754688.1| pnp [Escherichia coli DEC8C]
gi|419217558|ref|ZP_13760554.1| pnp [Escherichia coli DEC8D]
gi|419223312|ref|ZP_13766226.1| pnp [Escherichia coli DEC8E]
gi|419228763|ref|ZP_13771606.1| pnp [Escherichia coli DEC9A]
gi|419234189|ref|ZP_13776958.1| pnp [Escherichia coli DEC9B]
gi|419239735|ref|ZP_13782443.1| pnp [Escherichia coli DEC9C]
gi|419245232|ref|ZP_13787866.1| pnp [Escherichia coli DEC9D]
gi|419251092|ref|ZP_13793661.1| pnp [Escherichia coli DEC9E]
gi|419256770|ref|ZP_13799273.1| pnp [Escherichia coli DEC10A]
gi|419263071|ref|ZP_13805479.1| pnp [Escherichia coli DEC10B]
gi|419274524|ref|ZP_13816814.1| pnp [Escherichia coli DEC10D]
gi|419286077|ref|ZP_13828241.1| pnp [Escherichia coli DEC10F]
gi|419393322|ref|ZP_13934124.1| pnp [Escherichia coli DEC15A]
gi|419398424|ref|ZP_13939187.1| pnp [Escherichia coli DEC15B]
gi|419403706|ref|ZP_13944426.1| pnp [Escherichia coli DEC15C]
gi|419408864|ref|ZP_13949550.1| pnp [Escherichia coli DEC15D]
gi|419414412|ref|ZP_13955050.1| pnp [Escherichia coli DEC15E]
gi|419877665|ref|ZP_14399213.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9534]
gi|419884137|ref|ZP_14405125.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9545]
gi|419892520|ref|ZP_14412539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9570]
gi|419894284|ref|ZP_14414202.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9574]
gi|419903927|ref|ZP_14422940.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM9942]
gi|419909652|ref|ZP_14428191.1| polynucleotide phosphorylase [Escherichia coli O26:H11 str.
CVM10026]
gi|419922586|ref|ZP_14440598.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
541-15]
gi|420088970|ref|ZP_14600818.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9602]
gi|420094607|ref|ZP_14606186.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9634]
gi|420098955|ref|ZP_14610202.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9455]
gi|420105864|ref|ZP_14616297.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9553]
gi|420118191|ref|ZP_14627524.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10021]
gi|420118592|ref|ZP_14627913.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10030]
gi|420135148|ref|ZP_14643242.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM9952]
gi|420333133|ref|ZP_14834778.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
K-1770]
gi|420343567|ref|ZP_14845032.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-404]
gi|420368682|ref|ZP_14869423.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
1235-66]
gi|420382217|ref|ZP_14881655.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
225-75]
gi|424746855|ref|ZP_18175072.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CFSAN001629]
gi|424757935|ref|ZP_18185661.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CFSAN001630]
gi|424770295|ref|ZP_18197501.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CFSAN001632]
gi|424839418|ref|ZP_18264055.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5a
str. M90T]
gi|425381441|ref|ZP_18765440.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1865]
gi|123342480|sp|Q0T0B7.1|PNP_SHIF8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611324|sp|Q83JG0.5|PNP_SHIFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110616581|gb|ABF05248.1| Polyribonucleotide nucleotidyltransferase [Shigella flexneri 5 str.
8401]
gi|190901909|gb|EDV61658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B7A]
gi|313648594|gb|EFS13036.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri 2a
str. 2457T]
gi|320175528|gb|EFW50624.1| Polyribonucleotide nucleotidyltransferase [Shigella dysenteriae CDC
74-1112]
gi|323154378|gb|EFZ40579.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
EPECa14]
gi|323173576|gb|EFZ59205.1| polyribonucleotide nucleotidyltransferase [Escherichia coli LT-68]
gi|323178877|gb|EFZ64453.1| polyribonucleotide nucleotidyltransferase [Escherichia coli OK1180]
gi|332752324|gb|EGJ82714.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
4343-70]
gi|332752851|gb|EGJ83236.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-671]
gi|332754470|gb|EGJ84836.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
2747-71]
gi|332765161|gb|EGJ95388.1| pnp [Shigella flexneri 2930-71]
gi|332998806|gb|EGK18402.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri VA-6]
gi|332999243|gb|EGK18829.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-272]
gi|333000227|gb|EGK19810.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-218]
gi|333014593|gb|EGK33940.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-304]
gi|333014965|gb|EGK34309.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-227]
gi|335574040|gb|EGM60378.1| pnp [Shigella flexneri J1713]
gi|345333887|gb|EGW66333.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2534-86]
gi|378044469|gb|EHW06886.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC8A]
gi|378046203|gb|EHW08583.1| pnp [Escherichia coli DEC8B]
gi|378050814|gb|EHW13141.1| pnp [Escherichia coli DEC8C]
gi|378060147|gb|EHW22346.1| pnp [Escherichia coli DEC8D]
gi|378063506|gb|EHW25675.1| pnp [Escherichia coli DEC8E]
gi|378070356|gb|EHW32435.1| pnp [Escherichia coli DEC9A]
gi|378074964|gb|EHW36992.1| pnp [Escherichia coli DEC9B]
gi|378080737|gb|EHW42694.1| pnp [Escherichia coli DEC9C]
gi|378088229|gb|EHW50084.1| pnp [Escherichia coli DEC9D]
gi|378091510|gb|EHW53340.1| pnp [Escherichia coli DEC9E]
gi|378098086|gb|EHW59829.1| pnp [Escherichia coli DEC10A]
gi|378103360|gb|EHW65029.1| pnp [Escherichia coli DEC10B]
gi|378114249|gb|EHW75806.1| pnp [Escherichia coli DEC10D]
gi|378127213|gb|EHW88603.1| pnp [Escherichia coli DEC10F]
gi|378235576|gb|EHX95644.1| pnp [Escherichia coli DEC15A]
gi|378241358|gb|EHY01325.1| pnp [Escherichia coli DEC15B]
gi|378245961|gb|EHY05898.1| pnp [Escherichia coli DEC15C]
gi|378253425|gb|EHY13303.1| pnp [Escherichia coli DEC15D]
gi|378257677|gb|EHY17514.1| pnp [Escherichia coli DEC15E]
gi|383468470|gb|EID63491.1| polynucleotide phosphorylase/polyadenylase [Shigella flexneri 5a
str. M90T]
gi|386146931|gb|EIG93376.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0246]
gi|386188848|gb|EIH77637.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 4.0522]
gi|386195377|gb|EIH89612.1| polyribonucleotide nucleotidyltransferase [Escherichia coli JB1-95]
gi|386259477|gb|EIJ14951.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 900105
(10e)]
gi|388339170|gb|EIL05556.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9534]
gi|388347672|gb|EIL13332.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9570]
gi|388356030|gb|EIL20828.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9545]
gi|388364277|gb|EIL28141.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9574]
gi|388368859|gb|EIL32480.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM9942]
gi|388372718|gb|EIL36131.1| polynucleotide phosphorylase [Escherichia coli O26:H11 str.
CVM10026]
gi|388395987|gb|EIL57121.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
541-15]
gi|391247623|gb|EIQ06870.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
K-1770]
gi|391263831|gb|EIQ22831.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-404]
gi|391298851|gb|EIQ56838.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
225-75]
gi|391322011|gb|EIQ78718.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
1235-66]
gi|394389038|gb|EJE66230.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9602]
gi|394395619|gb|EJE72046.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CVM9634]
gi|394400983|gb|EJE76844.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10021]
gi|394417866|gb|EJE91578.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9553]
gi|394420597|gb|EJE94119.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM9952]
gi|394423906|gb|EJE97117.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CVM9455]
gi|394432970|gb|EJF05033.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10030]
gi|397895269|gb|EJL11701.1| pnp [Shigella flexneri 6603-63]
gi|408294581|gb|EKJ12963.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1865]
gi|421942699|gb|EKU00022.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H8 str. CFSAN001632]
gi|421947475|gb|EKU04547.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CFSAN001629]
gi|421948975|gb|EKU05972.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O111:H11 str. CFSAN001630]
Length = 711
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|432766571|ref|ZP_20000987.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE48]
gi|431308110|gb|ELF96398.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE48]
Length = 711
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKLGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|417131756|ref|ZP_11976541.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.0588]
gi|419927604|ref|ZP_14445338.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 541-1]
gi|423707465|ref|ZP_17681845.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B799]
gi|257096728|sp|B7M072.2|PNP_ECO8A RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|385709839|gb|EIG46832.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B799]
gi|386149610|gb|EIH00899.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 5.0588]
gi|388407040|gb|EIL67416.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 541-1]
Length = 711
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/691 (55%), Positives = 530/691 (76%), Gaps = 3/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI-SKDIYSSLIDNENLTIDINDINCILY 362
L +++ ++E ++ AY+I +KQ R I S+ I + L ++ENL D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDENL--DENELGEILH 298
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+
Sbjct: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA
Sbjct: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KR
Sbjct: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 659 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|451811633|ref|YP_007448088.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|451776791|gb|AGF47790.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 700
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/692 (56%), Positives = 529/692 (76%), Gaps = 3/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK+IKSFKYG + +E GEIARQ++ +VL S+ DTVILATVV ++ FFPLT
Sbjct: 1 MFNKVIKSFKYGLNDVVLETGEIARQSSGAVLASMGDTVILATVVGSQEIKEGQKFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDYIEK YA G+IPG FFKREGK SE+E + +RLIDRP+RPLFP+ + NE+QI+++VLSV
Sbjct: 61 VDYIEKTYAVGKIPGGFFKREGKSSEKEILTARLIDRPLRPLFPKQFYNEVQIIIHVLSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+IDPDI SIIG S AL++S +PF GP+G +VG+I+ +++NPT QL+KS LDL++A
Sbjct: 121 DPEIDPDIISIIGSSAALALSGIPFNGPIGAIRVGFIENDFVINPTKSQLEKSSLDLVLA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
G+ A++ VES +++L E +L AI FGH++M++ I+ I ELV+ G+ + +W P D+
Sbjct: 181 GSSDAVLMVESTARELSESTMLEAIDFGHQQMQVVIDNIIELVKEAGKPEWDWKPKPCDQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID---NENLTIDINDINCI 360
L+ I S K+ AY IK KQ R L + I +I + + D N ++ + I+ I
Sbjct: 241 FLVDIINEFSNEKLVSAYNIKEKQDRSLVLREIRLEIKNFVKDRVGNSDVIPLDSTIDDI 300
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
+++LESKI+R +IL RID R +RPI IR G+LPR HGS+LFTRG+TQALV+ TL
Sbjct: 301 IFNLESKIVRNRILSGEPRIDGRNTRTVRPIDIRLGVLPRAHGSALFTRGETQALVIVTL 360
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT +DEQ ID+L+GE+ D F+ HYNMPPFATG+IGRIG+PKRRE+GHG LA+RAL P+LP
Sbjct: 361 GTKQDEQIIDSLLGEYRDKFIFHYNMPPFATGEIGRIGIPKRREVGHGYLARRALTPMLP 420
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+ F+Y+ RLVSEITESNGSSSMASVCGG LA++DAGVPIS+HVAG+AMGLI + +K
Sbjct: 421 DPKDFHYTTRLVSEITESNGSSSMASVCGGSLAMMDAGVPISKHVAGVAMGLILEDDKFA 480
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
IL+DILGDED GDMDFKVAGT +GITALQMDIKI GIT DI+ IAL +A++G ILEK
Sbjct: 481 ILTDILGDEDHLGDMDFKVAGTSDGITALQMDIKIQGITKDIMGIALLQAQEGRLSILEK 540
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
MK + + ELS ++P++ITIKI+P KIRDVIGKGG+TIR +TEET TQIDI+++G+++
Sbjct: 541 MKKAINISREELSSYSPKIITIKINPDKIRDVIGKGGATIRAITEETATQIDISEDGVVS 600
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
+A ++ + Q A ++I +LT V++G VY G +LR+ DFGAI+++ GKDGLLHIS+IS+
Sbjct: 601 VAGVDNNNVQNAYKKILELTADVEVGSVYEGKILRILDFGAIVQLFPGKDGLLHISEISN 660
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
R+ I+D L Q+++VKV+ DD+GR +LS
Sbjct: 661 NRIQNISDVLSIGQRIKVKVIESDDKGRFRLS 692
>gi|420337504|ref|ZP_14839066.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-315]
gi|391259378|gb|EIQ18452.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri K-315]
Length = 711
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINTPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|26249747|ref|NP_755787.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
CFT073]
gi|91212585|ref|YP_542571.1| polynucleotide phosphorylase [Escherichia coli UTI89]
gi|386631046|ref|YP_006150766.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
'clone D i2']
gi|386635966|ref|YP_006155685.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
'clone D i14']
gi|26110175|gb|AAN82361.1|AE016767_121 Polyribonucleotide nucleotidyltransferase [Escherichia coli CFT073]
gi|91074159|gb|ABE09040.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UTI89]
gi|355421945|gb|AER86142.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
'clone D i2']
gi|355426865|gb|AER91061.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli str.
'clone D i14']
Length = 740
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 30 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 89
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 90 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 149
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 150 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 209
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 210 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 269
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 270 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 328
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 329 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 388
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 389 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 448
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 449 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 508
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 509 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 568
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 569 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 628
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 629 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 688
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 689 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 718
>gi|432451411|ref|ZP_19693668.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE193]
gi|433035058|ref|ZP_20222757.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE112]
gi|430977840|gb|ELC94663.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE193]
gi|431547798|gb|ELI22093.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE112]
Length = 711
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 529/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ +++ ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAQARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|425306956|ref|ZP_18696636.1| polyribonucleotide nucleotidyltransferase [Escherichia coli N1]
gi|408226334|gb|EKI49981.1| polyribonucleotide nucleotidyltransferase [Escherichia coli N1]
Length = 711
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNVRVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|308189117|ref|YP_003933248.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
gi|308059627|gb|ADO11799.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
Length = 740
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/690 (55%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 30 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 89
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 90 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSV 149
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S AL++S LPF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 150 NPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVA 209
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ +I I IN LV G+ + +W P +
Sbjct: 210 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANT 269
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LIS++ ++E +I AY+I +KQ R I + ++L+ E+ T+D ++I I++
Sbjct: 270 PLISRVAALAEARISDAYRITDKQERYAQVGVIKDETIAALL-AEDETLDGSEIGDIVHS 328
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL+ RID R + IR + +RTG+LPRTHGSSLFTRG+TQALV ATLGT+
Sbjct: 329 LEKTVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTT 388
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 389 RDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAE 448
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LS
Sbjct: 449 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLS 508
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q AL +AK +IL M+
Sbjct: 509 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQ 568
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 569 AISTPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 628
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 629 TDGLKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 688
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 689 EKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 718
>gi|440286024|ref|YP_007338789.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium strain FGI 57]
gi|440045546|gb|AGB76604.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium strain FGI 57]
Length = 711
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIREINELVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPELD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ NQ+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMNQEVPVKVLEVDRQGRIRLSI 689
>gi|365972256|ref|YP_004953817.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
EcWSU1]
gi|365751169|gb|AEW75396.1| Polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
EcWSU1]
Length = 712
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ +I I IN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++LI E+ T+D N+++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKDETIATLI-AEDETLDANELSEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|110643405|ref|YP_671135.1| polynucleotide phosphorylase [Escherichia coli 536]
gi|117625460|ref|YP_858783.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O1]
gi|218560236|ref|YP_002393149.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
gi|218691456|ref|YP_002399668.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
gi|227887888|ref|ZP_04005693.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
gi|300977831|ref|ZP_07174071.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
200-1]
gi|300990763|ref|ZP_07179335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
45-1]
gi|301047994|ref|ZP_07195036.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
185-1]
gi|331654770|ref|ZP_08355770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
gi|386640768|ref|YP_006107566.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU
83972]
gi|387618462|ref|YP_006121484.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1
str. NRG 857C]
gi|422357251|ref|ZP_16437918.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
110-3]
gi|422362338|ref|ZP_16442909.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
153-1]
gi|422370373|ref|ZP_16450766.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
16-3]
gi|422376587|ref|ZP_16456836.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
60-1]
gi|422380001|ref|ZP_16460182.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
57-2]
gi|110344997|gb|ABG71234.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 536]
gi|115514584|gb|ABJ02659.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli APEC
O1]
gi|218367005|emb|CAR04776.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli S88]
gi|218429020|emb|CAR09967.2| polynucleotide phosphorylase/polyadenylase [Escherichia coli ED1a]
gi|227835284|gb|EEJ45750.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 83972]
gi|300300137|gb|EFJ56522.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
185-1]
gi|300308208|gb|EFJ62728.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
200-1]
gi|300407071|gb|EFJ90609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
45-1]
gi|307555260|gb|ADN48035.1| polyribonucleotide nucleotidyltransferase [Escherichia coli ABU
83972]
gi|312947723|gb|ADR28550.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli O83:H1
str. NRG 857C]
gi|315288934|gb|EFU48332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
110-3]
gi|315294909|gb|EFU54248.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
153-1]
gi|315297884|gb|EFU57154.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
16-3]
gi|324008763|gb|EGB77982.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
57-2]
gi|324012110|gb|EGB81329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
60-1]
gi|331048152|gb|EGI20229.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M718]
Length = 734
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|157148733|ref|YP_001456052.1| polynucleotide phosphorylase/polyadenylase [Citrobacter koseri ATCC
BAA-895]
gi|157085938|gb|ABV15616.1| hypothetical protein CKO_04562 [Citrobacter koseri ATCC BAA-895]
Length = 722
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/696 (54%), Positives = 529/696 (76%), Gaps = 1/696 (0%)
Query: 58 MMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTY 117
+ KG L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K
Sbjct: 6 LRKGIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ 65
Query: 118 NFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIV 177
+FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++
Sbjct: 66 DFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVI 125
Query: 178 VYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSH 237
V+SVNPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S
Sbjct: 126 ATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESK 185
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGTE A++ VESE++ L ED +L A++FGHE+ +I I IN+LV+ G+ + +W
Sbjct: 186 LDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQ 245
Query: 298 PIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDI 357
++ L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++
Sbjct: 246 QEAVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIAALV-AEDETLDENEL 304
Query: 358 NCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVV 417
IL+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV
Sbjct: 305 GEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 364
Query: 418 ATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP 477
ATLGT+RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L
Sbjct: 365 ATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 424
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE 537
V+P +KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+
Sbjct: 425 VMPEMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 484
Query: 538 KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
V+LSDILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +I
Sbjct: 485 NFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 544
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
L M+ + + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G
Sbjct: 545 LGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 604
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQ 717
+ IA+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQ
Sbjct: 605 TVKIAATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQ 664
Query: 718 ISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I+ KRV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 665 IADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 700
>gi|218706786|ref|YP_002414305.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
UMN026]
gi|300897928|ref|ZP_07116307.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
198-1]
gi|301022018|ref|ZP_07185961.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
69-1]
gi|331674702|ref|ZP_08375461.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
gi|387608888|ref|YP_006097744.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042]
gi|218433883|emb|CAR14800.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
UMN026]
gi|284923188|emb|CBG36282.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 042]
gi|300358358|gb|EFJ74228.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
198-1]
gi|300397733|gb|EFJ81271.1| polyribonucleotide nucleotidyltransferase [Escherichia coli MS
69-1]
gi|331068141|gb|EGI39537.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA280]
Length = 734
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|387831051|ref|YP_003350988.1| polynucleotide phosphorylase [Escherichia coli SE15]
gi|281180208|dbj|BAI56538.1| polynucleotide phosphorylase [Escherichia coli SE15]
Length = 734
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|304396352|ref|ZP_07378233.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
gi|440758706|ref|ZP_20937865.1| Polyribonucleotide nucleotidyltransferase [Pantoea agglomerans
299R]
gi|304355861|gb|EFM20227.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
gi|436427634|gb|ELP25312.1| Polyribonucleotide nucleotidyltransferase [Pantoea agglomerans
299R]
Length = 711
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI +++G S AL++S LPF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVHPDIVAMMGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ +I I IN LV G+ + +W P +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LIS++ ++E +I AY+I +KQ R I + ++L+ E+ T+D ++I I++
Sbjct: 241 ALISRVAALAEARISDAYRITDKQERYTQVGVIKDETIAALL-AEDETLDGSEIGDIVHS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL+ RID R + IR + +RTG+LPRTHGSSLFTRG+TQALV ATLGT+
Sbjct: 300 LEKTVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T +++G+VY+G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEIEVGRVYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 689
>gi|401676929|ref|ZP_10808910.1| polyribonucleotide nucleotidyltransferase [Enterobacter sp. SST3]
gi|400215838|gb|EJO46743.1| polyribonucleotide nucleotidyltransferase [Enterobacter sp. SST3]
Length = 712
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 526/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEAAND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I ++ ++L+ E+ T+D N+I IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSEVTATLV-AEDETLDANEIGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRVYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|432803350|ref|ZP_20037304.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE84]
gi|431346681|gb|ELG33585.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE84]
Length = 711
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVTALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|187732493|ref|YP_001881919.1| polynucleotide phosphorylase/polyadenylase [Shigella boydii CDC
3083-94]
gi|226702689|sp|B2U211.1|PNP_SHIB3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187429485|gb|ACD08759.1| polyribonucleotide nucleotidyltransferase [Shigella boydii CDC
3083-94]
Length = 711
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LT+ETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|312968497|ref|ZP_07782706.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2362-75]
gi|417757523|ref|ZP_12405589.1| pnp [Escherichia coli DEC2B]
gi|418998529|ref|ZP_13546114.1| pnp [Escherichia coli DEC1A]
gi|419003897|ref|ZP_13551410.1| pnp [Escherichia coli DEC1B]
gi|419009570|ref|ZP_13556989.1| pnp [Escherichia coli DEC1C]
gi|419015152|ref|ZP_13562493.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC1D]
gi|419020202|ref|ZP_13567502.1| pnp [Escherichia coli DEC1E]
gi|419025663|ref|ZP_13572883.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC2A]
gi|419030795|ref|ZP_13577944.1| pnp [Escherichia coli DEC2C]
gi|419036447|ref|ZP_13583524.1| pnp [Escherichia coli DEC2D]
gi|419041500|ref|ZP_13588519.1| pnp [Escherichia coli DEC2E]
gi|312286715|gb|EFR14626.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
2362-75]
gi|377840792|gb|EHU05862.1| pnp [Escherichia coli DEC1A]
gi|377841403|gb|EHU06469.1| pnp [Escherichia coli DEC1C]
gi|377844570|gb|EHU09606.1| pnp [Escherichia coli DEC1B]
gi|377854685|gb|EHU19562.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC1D]
gi|377857885|gb|EHU22733.1| pnp [Escherichia coli DEC1E]
gi|377861351|gb|EHU26171.1| polyribonucleotide nucleotidyltransferase [Escherichia coli DEC2A]
gi|377871818|gb|EHU36476.1| pnp [Escherichia coli DEC2B]
gi|377874555|gb|EHU39182.1| pnp [Escherichia coli DEC2C]
gi|377876893|gb|EHU41492.1| pnp [Escherichia coli DEC2D]
gi|377887126|gb|EHU51604.1| pnp [Escherichia coli DEC2E]
Length = 711
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|170682265|ref|YP_001745438.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SMS-3-5]
gi|191172253|ref|ZP_03033796.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
gi|222157878|ref|YP_002558017.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82]
gi|237706083|ref|ZP_04536564.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
3_2_53FAA]
gi|293406776|ref|ZP_06650702.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
FVEC1412]
gi|298382516|ref|ZP_06992113.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FVEC1302]
gi|306816492|ref|ZP_07450624.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
gi|331659453|ref|ZP_08360395.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
gi|331684813|ref|ZP_08385405.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
gi|386601192|ref|YP_006102698.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
IHE3034]
gi|386602751|ref|YP_006109051.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146]
gi|415839226|ref|ZP_11521044.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
RN587/1]
gi|416337224|ref|ZP_11673650.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
WV_060327]
gi|416899485|ref|ZP_11928967.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_7v]
gi|417117588|ref|ZP_11968449.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1.2741]
gi|417138608|ref|ZP_11982259.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0259]
gi|417281683|ref|ZP_12068983.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3003]
gi|417309696|ref|ZP_12096526.1| hypothetical protein PPECC33_30980 [Escherichia coli PCN033]
gi|417588278|ref|ZP_12239042.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_C165-02]
gi|419701998|ref|ZP_14229596.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SCI-07]
gi|419913498|ref|ZP_14431929.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli KD1]
gi|419919648|ref|ZP_14437792.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli KD2]
gi|419935091|ref|ZP_14452178.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 576-1]
gi|419946182|ref|ZP_14462599.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HM605]
gi|422332641|ref|ZP_16413654.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
4_1_47FAA]
gi|422749733|ref|ZP_16803644.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252]
gi|422753892|ref|ZP_16807718.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263]
gi|422779873|ref|ZP_16832658.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10509]
gi|422801112|ref|ZP_16849609.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863]
gi|422827430|ref|ZP_16875604.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B093]
gi|422833484|ref|ZP_16881550.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E101]
gi|422841182|ref|ZP_16889152.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H397]
gi|425279565|ref|ZP_18670793.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
ARS4.2123]
gi|425302035|ref|ZP_18691919.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 07798]
gi|432355172|ref|ZP_19598440.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE2]
gi|432359620|ref|ZP_19602834.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE4]
gi|432364417|ref|ZP_19607574.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE5]
gi|432382896|ref|ZP_19625835.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE15]
gi|432388927|ref|ZP_19631807.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE16]
gi|432393757|ref|ZP_19636581.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE21]
gi|432403547|ref|ZP_19646292.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE26]
gi|432413395|ref|ZP_19656050.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE39]
gi|432427808|ref|ZP_19670292.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE181]
gi|432433386|ref|ZP_19675811.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE187]
gi|432437981|ref|ZP_19680365.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE188]
gi|432458294|ref|ZP_19700471.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE201]
gi|432462511|ref|ZP_19704645.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE204]
gi|432472518|ref|ZP_19714556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE206]
gi|432477504|ref|ZP_19719494.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE208]
gi|432490951|ref|ZP_19732815.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE213]
gi|432497287|ref|ZP_19739080.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE214]
gi|432506044|ref|ZP_19747764.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE220]
gi|432515563|ref|ZP_19752779.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE224]
gi|432519366|ref|ZP_19756546.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE228]
gi|432525499|ref|ZP_19762618.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE230]
gi|432539524|ref|ZP_19776418.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE235]
gi|432544910|ref|ZP_19781745.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE236]
gi|432550392|ref|ZP_19787152.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE237]
gi|432555236|ref|ZP_19791955.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE47]
gi|432570396|ref|ZP_19806903.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE53]
gi|432575367|ref|ZP_19811841.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE55]
gi|432581635|ref|ZP_19818049.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE57]
gi|432589551|ref|ZP_19825904.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE58]
gi|432594367|ref|ZP_19830680.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE60]
gi|432599419|ref|ZP_19835690.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE62]
gi|432604005|ref|ZP_19840236.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE66]
gi|432609207|ref|ZP_19845389.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE67]
gi|432613177|ref|ZP_19849335.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE72]
gi|432618415|ref|ZP_19854520.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE75]
gi|432623532|ref|ZP_19859551.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE76]
gi|432633044|ref|ZP_19868965.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE80]
gi|432642734|ref|ZP_19878560.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE83]
gi|432647845|ref|ZP_19883631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE86]
gi|432652765|ref|ZP_19888511.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE87]
gi|432657408|ref|ZP_19893105.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE93]
gi|432667731|ref|ZP_19903304.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE116]
gi|432700689|ref|ZP_19935834.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE169]
gi|432715018|ref|ZP_19950046.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE8]
gi|432720301|ref|ZP_19955266.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE9]
gi|432733924|ref|ZP_19968749.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE45]
gi|432747151|ref|ZP_19981813.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE43]
gi|432756101|ref|ZP_19990646.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE22]
gi|432761010|ref|ZP_19995500.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE46]
gi|432767539|ref|ZP_20001933.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE50]
gi|432780181|ref|ZP_20014402.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE59]
gi|432785139|ref|ZP_20019317.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE63]
gi|432789174|ref|ZP_20023302.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE65]
gi|432794391|ref|ZP_20028473.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE78]
gi|432795908|ref|ZP_20029949.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE79]
gi|432816940|ref|ZP_20050701.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE115]
gi|432822609|ref|ZP_20056298.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE118]
gi|432824064|ref|ZP_20057734.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE123]
gi|432840977|ref|ZP_20074437.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE140]
gi|432846215|ref|ZP_20078896.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE141]
gi|432854310|ref|ZP_20082855.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE144]
gi|432870629|ref|ZP_20091086.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE147]
gi|432888472|ref|ZP_20102224.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE158]
gi|432890543|ref|ZP_20103475.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE165]
gi|432900396|ref|ZP_20110818.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE192]
gi|432906815|ref|ZP_20115354.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE194]
gi|432914661|ref|ZP_20120077.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE190]
gi|432939794|ref|ZP_20137897.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE183]
gi|432963625|ref|ZP_20153044.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE202]
gi|432973446|ref|ZP_20162292.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE207]
gi|432975374|ref|ZP_20164209.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE209]
gi|432987020|ref|ZP_20175733.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE215]
gi|433001530|ref|ZP_20190049.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE223]
gi|433006753|ref|ZP_20195177.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE227]
gi|433009368|ref|ZP_20197781.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE229]
gi|433020299|ref|ZP_20208465.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE105]
gi|433030083|ref|ZP_20217935.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE109]
gi|433040170|ref|ZP_20227763.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE113]
gi|433054802|ref|ZP_20241969.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE122]
gi|433059654|ref|ZP_20246691.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE124]
gi|433064621|ref|ZP_20251532.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE125]
gi|433069487|ref|ZP_20256262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE128]
gi|433079357|ref|ZP_20265877.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE131]
gi|433084098|ref|ZP_20270546.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE133]
gi|433088823|ref|ZP_20275189.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE137]
gi|433102758|ref|ZP_20288831.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE145]
gi|433126737|ref|ZP_20312284.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE160]
gi|433140801|ref|ZP_20326047.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE167]
gi|433145776|ref|ZP_20330910.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE168]
gi|433150806|ref|ZP_20335807.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE174]
gi|433155318|ref|ZP_20340251.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE176]
gi|433160279|ref|ZP_20345106.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE177]
gi|433165159|ref|ZP_20349890.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE179]
gi|433170135|ref|ZP_20354758.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE180]
gi|433179999|ref|ZP_20364385.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE82]
gi|433189977|ref|ZP_20374066.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE88]
gi|433204893|ref|ZP_20388645.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE95]
gi|433209296|ref|ZP_20392964.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE97]
gi|433214146|ref|ZP_20397729.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE99]
gi|442605370|ref|ZP_21020202.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli Nissle
1917]
gi|450193269|ref|ZP_21891926.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SEPT362]
gi|187610330|sp|A1AG69.2|PNP_ECOK1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610331|sp|Q0TCU5.2|PNP_ECOL5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610332|sp|Q8FD87.2|PNP_ECOL6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610333|sp|Q1R6H4.2|PNP_ECOUT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702650|sp|B1LFR6.1|PNP_ECOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096724|sp|B7MB85.2|PNP_ECO45 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096727|sp|B7N0U9.2|PNP_ECO81 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096730|sp|B7NDF0.2|PNP_ECOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|170519983|gb|ACB18161.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
SMS-3-5]
gi|190907563|gb|EDV67159.1| polyribonucleotide nucleotidyltransferase [Escherichia coli F11]
gi|222034883|emb|CAP77626.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli LF82]
gi|226899123|gb|EEH85382.1| polynucleotide phosphorylase/polyadenylase [Escherichia sp.
3_2_53FAA]
gi|291426782|gb|EFE99814.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
FVEC1412]
gi|294490926|gb|ADE89682.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
IHE3034]
gi|298277656|gb|EFI19172.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FVEC1302]
gi|305850057|gb|EFM50516.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli NC101]
gi|307625235|gb|ADN69539.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli UM146]
gi|320194650|gb|EFW69280.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
WV_060327]
gi|323189213|gb|EFZ74497.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
RN587/1]
gi|323951316|gb|EGB47191.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H252]
gi|323957687|gb|EGB53401.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H263]
gi|323966346|gb|EGB61780.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M863]
gi|323979117|gb|EGB74195.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW10509]
gi|327251945|gb|EGE63631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_7v]
gi|331054035|gb|EGI26064.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA206]
gi|331078428|gb|EGI49634.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H299]
gi|338768642|gb|EGP23432.1| hypothetical protein PPECC33_30980 [Escherichia coli PCN033]
gi|345333165|gb|EGW65617.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
STEC_C165-02]
gi|371604922|gb|EHN93546.1| polyribonucleotide nucleotidyltransferase [Escherichia coli H397]
gi|371606346|gb|EHN94943.1| polyribonucleotide nucleotidyltransferase [Escherichia coli E101]
gi|371613105|gb|EHO01606.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B093]
gi|373246321|gb|EHP65775.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
4_1_47FAA]
gi|380346849|gb|EIA35139.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SCI-07]
gi|386140132|gb|EIG81287.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 1.2741]
gi|386157792|gb|EIH14130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
97.0259]
gi|386246012|gb|EII87742.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3003]
gi|388387013|gb|EIL48642.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli KD2]
gi|388389156|gb|EIL50692.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli KD1]
gi|388405427|gb|EIL65857.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli 576-1]
gi|388413522|gb|EIL73514.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli HM605]
gi|408199052|gb|EKI24261.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
ARS4.2123]
gi|408211510|gb|EKI36056.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 07798]
gi|430873400|gb|ELB96974.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE2]
gi|430874659|gb|ELB98215.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE4]
gi|430884179|gb|ELC07150.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE5]
gi|430904397|gb|ELC26106.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE16]
gi|430905956|gb|ELC27564.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE15]
gi|430915436|gb|ELC36515.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE21]
gi|430923933|gb|ELC44666.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE26]
gi|430933920|gb|ELC54311.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE39]
gi|430951568|gb|ELC70788.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE187]
gi|430952469|gb|ELC71533.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE181]
gi|430961206|gb|ELC79253.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE188]
gi|430980506|gb|ELC97266.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE201]
gi|430986442|gb|ELD03013.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE204]
gi|430996302|gb|ELD12588.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE206]
gi|431002733|gb|ELD18240.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE208]
gi|431018999|gb|ELD32429.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE213]
gi|431021849|gb|ELD35170.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE214]
gi|431036187|gb|ELD47563.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE220]
gi|431039170|gb|ELD50056.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE224]
gi|431048605|gb|ELD58581.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE228]
gi|431049151|gb|ELD59115.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE230]
gi|431067383|gb|ELD75988.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE235]
gi|431072250|gb|ELD80002.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE236]
gi|431078004|gb|ELD85063.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE237]
gi|431082587|gb|ELD88901.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE47]
gi|431098290|gb|ELE03613.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE53]
gi|431105950|gb|ELE10284.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE55]
gi|431118909|gb|ELE21928.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE58]
gi|431121917|gb|ELE24786.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE57]
gi|431126769|gb|ELE29116.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE60]
gi|431129289|gb|ELE31465.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE62]
gi|431136307|gb|ELE38176.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE67]
gi|431138303|gb|ELE40139.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE66]
gi|431147360|gb|ELE48783.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE72]
gi|431152171|gb|ELE53129.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE75]
gi|431157138|gb|ELE57792.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE76]
gi|431168173|gb|ELE68427.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE80]
gi|431178471|gb|ELE78380.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE83]
gi|431179192|gb|ELE79099.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE86]
gi|431188493|gb|ELE87935.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE87]
gi|431188865|gb|ELE88306.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE93]
gi|431198414|gb|ELE97237.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE116]
gi|431241169|gb|ELF35616.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE169]
gi|431253876|gb|ELF47354.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE8]
gi|431261124|gb|ELF53215.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE9]
gi|431272832|gb|ELF63931.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE45]
gi|431290263|gb|ELF80988.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE43]
gi|431300376|gb|ELF89929.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE22]
gi|431306317|gb|ELF94630.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE46]
gi|431322703|gb|ELG10288.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE50]
gi|431325424|gb|ELG12812.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE59]
gi|431328296|gb|ELG15616.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE63]
gi|431336174|gb|ELG23303.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE65]
gi|431338461|gb|ELG25548.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE78]
gi|431350046|gb|ELG36874.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE79]
gi|431361941|gb|ELG48520.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE115]
gi|431366398|gb|ELG52896.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE118]
gi|431378589|gb|ELG63580.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE123]
gi|431387607|gb|ELG71431.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE140]
gi|431393725|gb|ELG77289.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE141]
gi|431398725|gb|ELG82145.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE144]
gi|431409599|gb|ELG92774.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE147]
gi|431414927|gb|ELG97478.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE158]
gi|431424169|gb|ELH06266.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE192]
gi|431429263|gb|ELH11193.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE194]
gi|431431668|gb|ELH13443.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE165]
gi|431436827|gb|ELH18341.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE190]
gi|431461464|gb|ELH41732.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE183]
gi|431472200|gb|ELH52092.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE202]
gi|431479872|gb|ELH59605.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE207]
gi|431487440|gb|ELH67085.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE209]
gi|431496276|gb|ELH75860.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE215]
gi|431505847|gb|ELH84452.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE223]
gi|431511445|gb|ELH89577.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE227]
gi|431522400|gb|ELH99635.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE229]
gi|431528635|gb|ELI05342.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE105]
gi|431541765|gb|ELI17204.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE109]
gi|431549414|gb|ELI23495.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE113]
gi|431566981|gb|ELI39996.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE124]
gi|431567682|gb|ELI40675.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE122]
gi|431579321|gb|ELI51905.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE125]
gi|431580542|gb|ELI53101.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE128]
gi|431594560|gb|ELI64840.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE131]
gi|431598634|gb|ELI68422.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE133]
gi|431602730|gb|ELI72160.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE137]
gi|431617037|gb|ELI86059.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE145]
gi|431641611|gb|ELJ09346.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE160]
gi|431657178|gb|ELJ24145.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE167]
gi|431658985|gb|ELJ25892.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE168]
gi|431668158|gb|ELJ34690.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE174]
gi|431671456|gb|ELJ37737.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE176]
gi|431675062|gb|ELJ41208.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE177]
gi|431684921|gb|ELJ50526.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE179]
gi|431686411|gb|ELJ51977.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE180]
gi|431698545|gb|ELJ63572.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE82]
gi|431703142|gb|ELJ67831.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE88]
gi|431717310|gb|ELJ81409.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE95]
gi|431728649|gb|ELJ92322.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE97]
gi|431732688|gb|ELJ96138.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE99]
gi|441713852|emb|CCQ06179.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli Nissle
1917]
gi|449317776|gb|EMD07860.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
SEPT362]
Length = 711
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|291616014|ref|YP_003518756.1| Pnp [Pantoea ananatis LMG 20103]
gi|291151044|gb|ADD75628.1| Pnp [Pantoea ananatis LMG 20103]
Length = 757
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/696 (54%), Positives = 525/696 (75%), Gaps = 1/696 (0%)
Query: 58 MMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTY 117
M++ L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K
Sbjct: 43 MLRTLILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQ 102
Query: 118 NFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIV 177
+FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRP+RPLFPEG++NE+Q++
Sbjct: 103 DFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVI 162
Query: 178 VYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSH 237
V+SVNPQ+ PDI ++IG S AL++S LPF GP+G A+VGYI+ +Y+LNPT ++LK S
Sbjct: 163 ATVVSVNPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSR 222
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGT+ A++ VESE++ L E+ +L A++FGH++ +I I IN LV G+ + +W
Sbjct: 223 LDLVVAGTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQ 282
Query: 298 PIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDI 357
P + LIS++ ++E +I AY+I +KQ R I + ++L+ E+ ++D +I
Sbjct: 283 PEQANTALISRVAALAETRISDAYRITDKQERYTQVGVIKDETIAALL-AEDESLDAAEI 341
Query: 358 NCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVV 417
I++ LE ++R +IL+ RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV
Sbjct: 342 GDIVHSLEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 401
Query: 418 ATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP 477
ATLGT+RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L
Sbjct: 402 ATLGTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 461
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE 537
V+P F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ +
Sbjct: 462 VMPKAEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDD 521
Query: 538 KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
K V+LSDILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +I
Sbjct: 522 KFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHI 581
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
L M+ + + E+S+FAPR+ TIKI+ KI+DVIGKGGS IR LTEETGT I+I D+G
Sbjct: 582 LGVMEQAISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 641
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQ 717
+ IA+ + + +EA RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQ
Sbjct: 642 TVKIAATDGLKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQ 701
Query: 718 ISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I+ KRV +TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 702 IADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 737
>gi|206579040|ref|YP_002236426.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
342]
gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
At-22]
gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
gi|226702656|sp|B5XSX9.1|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
342]
gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
At-22]
gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
Length = 711
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I IN+LV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTID 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|82778478|ref|YP_404827.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197]
gi|81242626|gb|ABB63336.1| polynucleotide phosphorylase [Shigella dysenteriae Sd197]
Length = 734
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLLMGQEVPVKVLEVDRQGRIRLSI 712
>gi|331648965|ref|ZP_08350053.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
gi|331042712|gb|EGI14854.1| polyribonucleotide nucleotidyltransferase [Escherichia coli M605]
Length = 734
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 712
>gi|218550449|ref|YP_002384240.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
ATCC 35469]
gi|218357990|emb|CAQ90636.1| polynucleotide phosphorylase/polyadenylase [Escherichia fergusonii
ATCC 35469]
Length = 734
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 24 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 84 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 144 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 204 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 264 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 323 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 383 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 443 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 563 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 623 TDGEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 683 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 712
>gi|398798033|ref|ZP_10557335.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. GM01]
gi|398101281|gb|EJL91504.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. GM01]
Length = 712
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 520/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFINEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S LPF GP+G A+VGYI+ +Y+LNPT +++ +S L+L+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADEINESRLNLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L E+ +L A++FGHE+ +I I IN LV G+ + +W P+ +
Sbjct: 181 GTQNAVLMVESEADILTEEQMLGAVVFGHEQQQIVIENINALVAEAGKPRWDWQPLPTND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+++ ++E I AY+I +KQ R T KD + + E+ T+D DI I++D
Sbjct: 241 ALIARVTALAEAGISDAYRITDKQER-YTQVGAVKDATIAALQAEDETLDAGDIADIVHD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +I+ RID R + IR + +RTG+LPRTHGSSLFTRG+TQALV ATLGT+
Sbjct: 300 LEKSVVRSRIIRGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNLDELMGERTDSFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQA 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRQEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S+ +EA RRIE++T +++G+VY+G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDSLKAKEAIRRIEEITAEIEVGRVYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 689
>gi|442592996|ref|ZP_21010952.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441607152|emb|CCP96393.1| Polyribonucleotide nucleotidyltransferase [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
Length = 711
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++ ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAGARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|372275452|ref|ZP_09511488.1| polynucleotide phosphorylase/polyadenylase [Pantoea sp. SL1_M5]
gi|390436777|ref|ZP_10225315.1| polynucleotide phosphorylase/polyadenylase [Pantoea agglomerans
IG1]
Length = 712
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/690 (55%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S AL++S LPF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVHPDIVAMIGASAALALSGLPFNGPIGSARVGYINDQYVLNPTADELKQSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ +I I IN LV G+ + +W P +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LIS++ ++E +I AY+I +KQ R I + ++L+ E+ T+D ++I I++
Sbjct: 241 ALISRVAALAEARISDAYRITDKQERYTQVGVIKDETIAALL-AEDETLDGSEIGDIVHS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL+ RID R + IR + +RTG+LPRTHGSSLFTRG+TQALV ATLGT+
Sbjct: 300 LEKTVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LS
Sbjct: 420 DFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q AL +A+ +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQARGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T +++G+VY+G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEIEVGRVYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 689
>gi|334125777|ref|ZP_08499763.1| polyribonucleotide nucleotidyltransferase [Enterobacter hormaechei
ATCC 49162]
gi|419959498|ref|ZP_14475551.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae GS1]
gi|333386539|gb|EGK57752.1| polyribonucleotide nucleotidyltransferase [Enterobacter hormaechei
ATCC 49162]
gi|388605579|gb|EIM34796.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae GS1]
Length = 712
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 526/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEAAND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I ++ ++L+ E+ T+D N+I IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSEVTATLV-AEDETLDANEIGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|417285924|ref|ZP_12073215.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW07793]
gi|386251165|gb|EII97332.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
TW07793]
Length = 711
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGVMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|417264640|ref|ZP_12052034.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2.3916]
gi|418304798|ref|ZP_12916592.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNF18]
gi|339416896|gb|AEJ58568.1| polyribonucleotide nucleotidyltransferase [Escherichia coli UMNF18]
gi|386222349|gb|EII44778.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 2.3916]
Length = 711
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGVMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++ +VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVSRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|429083698|ref|ZP_19146727.1| Polyribonucleotide nucleotidyltransferase [Cronobacter condimenti
1330]
gi|426547317|emb|CCJ72768.1| Polyribonucleotide nucleotidyltransferase [Cronobacter condimenti
1330]
Length = 719
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/692 (54%), Positives = 519/692 (75%), Gaps = 2/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQEELKSSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I IN+LV+ G+ + +W P ++
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCIL 361
L +++ ++E ++ AY+I +KQ R I D+ S+L E +D N++ IL
Sbjct: 241 ALNARVKALAESRLSDAYRITDKQERYSQIDAIKADVISALQAEQAEGDALDENELGDIL 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 301 HAIEKNVVRSRVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID LMGE TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 361 TERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPA 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+
Sbjct: 421 ADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + I
Sbjct: 541 EQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ K
Sbjct: 601 AATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 661 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 692
>gi|378768795|ref|YP_005197269.1| polynucleotide phosphorylase/polyadenylase [Pantoea ananatis LMG
5342]
gi|386018181|ref|YP_005936483.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
AJ13355]
gi|327396265|dbj|BAK13687.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
AJ13355]
gi|365188282|emb|CCF11232.1| polynucleotide phosphorylase/polyadenylase [Pantoea ananatis LMG
5342]
Length = 715
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/696 (54%), Positives = 525/696 (75%), Gaps = 1/696 (0%)
Query: 58 MMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTY 117
M++ L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K
Sbjct: 1 MLRTLILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQ 60
Query: 118 NFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIV 177
+FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRP+RPLFPEG++NE+Q++
Sbjct: 61 DFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVI 120
Query: 178 VYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSH 237
V+SVNPQ+ PDI ++IG S AL++S LPF GP+G A+VGYI+ +Y+LNPT ++LK S
Sbjct: 121 ATVVSVNPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSR 180
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGT+ A++ VESE++ L E+ +L A++FGH++ +I I IN LV G+ + +W
Sbjct: 181 LDLVVAGTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQ 240
Query: 298 PIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDI 357
P + LIS++ ++E +I AY+I +KQ R I + ++L+ E+ ++D +I
Sbjct: 241 PEQANTALISRVAALAETRISDAYRITDKQERYTQVGVIKDETIAALL-AEDESLDAAEI 299
Query: 358 NCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVV 417
I++ LE ++R +IL+ RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV
Sbjct: 300 GDIVHSLEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 359
Query: 418 ATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP 477
ATLGT+RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L
Sbjct: 360 ATLGTTRDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 419
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE 537
V+P F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ +
Sbjct: 420 VMPKAEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDD 479
Query: 538 KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
K V+LSDILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +I
Sbjct: 480 KFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHI 539
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
L M+ + + E+S+FAPR+ TIKI+ KI+DVIGKGGS IR LTEETGT I+I D+G
Sbjct: 540 LGVMEQAISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 599
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQ 717
+ IA+ + + +EA RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQ
Sbjct: 600 TVKIAATDGLKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQ 659
Query: 718 ISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I+ KRV +TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 660 IADKRVEKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 695
>gi|283836290|ref|ZP_06356031.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
29220]
gi|291067653|gb|EFE05762.1| polyribonucleotide nucleotidyltransferase [Citrobacter youngae ATCC
29220]
Length = 710
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AINEL + G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQSLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPDLD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|432467485|ref|ZP_19709564.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE205]
gi|433074424|ref|ZP_20261066.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE129]
gi|433121736|ref|ZP_20307397.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE157]
gi|433184887|ref|ZP_20369125.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE85]
gi|430991971|gb|ELD08370.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE205]
gi|431584822|gb|ELI56797.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE129]
gi|431639767|gb|ELJ07616.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE157]
gi|431703499|gb|ELJ68186.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE85]
Length = 711
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TGGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|386620779|ref|YP_006140359.1| polynucleotide phosphorylase [Escherichia coli NA114]
gi|424817727|ref|ZP_18242878.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227]
gi|432399120|ref|ZP_19641895.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE25]
gi|432408245|ref|ZP_19650949.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE28]
gi|432423580|ref|ZP_19666119.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE178]
gi|432501729|ref|ZP_19743481.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE216]
gi|432560442|ref|ZP_19797098.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE49]
gi|432696039|ref|ZP_19931232.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE162]
gi|432707516|ref|ZP_19942593.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE6]
gi|432724638|ref|ZP_19959552.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE17]
gi|432729221|ref|ZP_19964096.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE18]
gi|432742908|ref|ZP_19977623.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE23]
gi|432922187|ref|ZP_20125151.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE173]
gi|432928986|ref|ZP_20130087.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE175]
gi|432982618|ref|ZP_20171389.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE211]
gi|432992272|ref|ZP_20180931.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE217]
gi|433097974|ref|ZP_20284150.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE139]
gi|433107422|ref|ZP_20293387.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE148]
gi|433112404|ref|ZP_20298260.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE150]
gi|257096720|sp|B7LR33.2|PNP_ESCF3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|325498747|gb|EGC96606.1| polynucleotide phosphorylase [Escherichia fergusonii ECD227]
gi|333971280|gb|AEG38085.1| Polynucleotide phosphorylase [Escherichia coli NA114]
gi|430913725|gb|ELC34846.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE25]
gi|430928246|gb|ELC48797.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE28]
gi|430942889|gb|ELC63020.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE178]
gi|431026646|gb|ELD39717.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE216]
gi|431089154|gb|ELD94978.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE49]
gi|431232114|gb|ELF27790.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE162]
gi|431255944|gb|ELF49022.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE6]
gi|431263572|gb|ELF55558.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE17]
gi|431271817|gb|ELF62936.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE18]
gi|431282066|gb|ELF72964.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE23]
gi|431437210|gb|ELH18723.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE173]
gi|431442109|gb|ELH23216.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE175]
gi|431489865|gb|ELH69490.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE211]
gi|431492541|gb|ELH72142.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE217]
gi|431613563|gb|ELI82759.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE139]
gi|431625020|gb|ELI93614.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE148]
gi|431626274|gb|ELI94826.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE150]
Length = 711
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|296104878|ref|YP_003615024.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295059337|gb|ADF64075.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 712
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I INELV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEAGKPRWDWQPEAAND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N+++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKDETIATLV-AEDETLDANELSEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|365144133|ref|ZP_09348520.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp.
4_1_44FAA]
gi|378980868|ref|YP_005229009.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|386036720|ref|YP_005956633.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
KCTC 2242]
gi|402778829|ref|YP_006634375.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|419972234|ref|ZP_14487663.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|419978229|ref|ZP_14493526.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|419984969|ref|ZP_14500113.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|419989185|ref|ZP_14504162.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|419995313|ref|ZP_14510120.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|420001326|ref|ZP_14515982.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|420007136|ref|ZP_14521631.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|420013017|ref|ZP_14527329.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|420018740|ref|ZP_14532936.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|420026292|ref|ZP_14540295.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|420029666|ref|ZP_14543495.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|420037496|ref|ZP_14551150.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|420041290|ref|ZP_14554787.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|420047456|ref|ZP_14560773.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|420052761|ref|ZP_14565941.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|420060308|ref|ZP_14573309.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|420064912|ref|ZP_14577720.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|420072122|ref|ZP_14584763.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|420076854|ref|ZP_14589323.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|420081957|ref|ZP_14594260.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|421911616|ref|ZP_16341369.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|421919440|ref|ZP_16348942.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|424832557|ref|ZP_18257285.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424931607|ref|ZP_18349979.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425074692|ref|ZP_18477795.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW1]
gi|425083355|ref|ZP_18486452.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW2]
gi|425085328|ref|ZP_18488421.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW3]
gi|425093479|ref|ZP_18496563.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW5]
gi|428149571|ref|ZP_18997385.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
gi|428932318|ref|ZP_19005898.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
JHCK1]
gi|428939372|ref|ZP_19012482.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
VA360]
gi|449059559|ref|ZP_21737253.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
hvKP1]
gi|187610278|sp|A6TEI3.1|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|339763848|gb|AEK00069.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
KCTC 2242]
gi|363648599|gb|EHL87757.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp.
4_1_44FAA]
gi|364520279|gb|AEW63407.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|397352062|gb|EJJ45143.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|397352512|gb|EJJ45591.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|397353287|gb|EJJ46362.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|397368066|gb|EJJ60674.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|397370017|gb|EJJ62609.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|397372217|gb|EJJ64713.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|397380928|gb|EJJ73106.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|397385248|gb|EJJ77352.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|397389983|gb|EJJ81905.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|397395422|gb|EJJ87128.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|397402877|gb|EJJ94472.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|397405427|gb|EJJ96890.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|397417242|gb|EJK08411.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|397418897|gb|EJK10051.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|397424893|gb|EJK15781.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|397432750|gb|EJK23407.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|397434169|gb|EJK24809.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|397439608|gb|EJK30047.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|397446810|gb|EJK37018.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|397452684|gb|EJK42751.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|402539780|gb|AFQ63929.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|405594895|gb|EKB68285.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW1]
gi|405598556|gb|EKB71758.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW2]
gi|405607360|gb|EKB80329.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW3]
gi|405611024|gb|EKB83813.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW5]
gi|407805794|gb|EKF77045.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|410114520|emb|CCM83994.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|410118291|emb|CCM91567.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|414710000|emb|CCN31704.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426304061|gb|EKV66214.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
VA360]
gi|426307204|gb|EKV69290.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
JHCK1]
gi|427540331|emb|CCM93523.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
gi|448874723|gb|EMB09756.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
hvKP1]
Length = 711
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 524/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I IN+LV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|293412539|ref|ZP_06655262.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
gi|291469310|gb|EFF11801.1| polyribonucleotide nucleotidyltransferase [Escherichia coli B354]
Length = 711
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDDTLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|237730084|ref|ZP_04560565.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
gi|226908690|gb|EEH94608.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. 30_2]
Length = 710
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AINEL + G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPELD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|378582097|ref|ZP_09830737.1| polynucleotide phosphorylase/polyadenylase [Pantoea stewartii
subsp. stewartii DC283]
gi|377815412|gb|EHT98527.1| polynucleotide phosphorylase/polyadenylase [Pantoea stewartii
subsp. stewartii DC283]
Length = 709
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S AL++S LPF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ ++ I IN LV G+ + +W P +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEAANT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LIS++ ++E +I AY+I +KQ R I + ++L+ E+ ++D +I I++
Sbjct: 241 ALISRVAALAEARISDAYRITDKQARYAQVDAIKDETIAALL-AEDESLDAAEIGDIVHS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL+ RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKTVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKVE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ +K V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRQEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 689
>gi|423110531|ref|ZP_17098226.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5243]
gi|423116530|ref|ZP_17104221.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5245]
gi|376378096|gb|EHS90860.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5245]
gi|376379096|gb|EHS91851.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5243]
Length = 712
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN+LV+ G+ + +W P V D
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|421729364|ref|ZP_16168501.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca
M5al]
gi|410369906|gb|EKP24650.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca
M5al]
Length = 712
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ +I I IN+LV+ G+ + +W P V D
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ ++D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDAIKSETIATLV-AEDESLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|417663749|ref|ZP_12313329.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86]
gi|330909222|gb|EGH37736.1| polyribonucleotide nucleotidyltransferase [Escherichia coli AA86]
Length = 711
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKNAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|309785491|ref|ZP_07680122.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1617]
gi|187611311|sp|Q32BG9.2|PNP_SHIDS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|308926611|gb|EFP72087.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
1617]
Length = 711
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGIVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLLMGQEVPVKVLEVDRQGRIRLSI 689
>gi|395227958|ref|ZP_10406283.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. A1]
gi|421846455|ref|ZP_16279603.1| polynucleotide phosphorylase/polyadenylase [Citrobacter freundii
ATCC 8090 = MTCC 1658]
gi|424732929|ref|ZP_18161501.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. L17]
gi|394718454|gb|EJF24084.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. A1]
gi|411772332|gb|EKS55958.1| polynucleotide phosphorylase/polyadenylase [Citrobacter freundii
ATCC 8090 = MTCC 1658]
gi|422892745|gb|EKU32598.1| polyribonucleotide nucleotidyltransferase [Citrobacter sp. L17]
gi|455644685|gb|EMF23778.1| polynucleotide phosphorylase/polyadenylase [Citrobacter freundii
GTC 09479]
Length = 710
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AINEL + G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPELD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|401765357|ref|YP_006580364.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae ENHKU01]
gi|400176891|gb|AFP71740.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae ENHKU01]
Length = 712
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 526/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ +I I IN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAAND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I ++ ++L+ E+ T+D N+I IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSEVTATLV-AEDETLDANEIGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQIIDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|395232729|ref|ZP_10410978.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. Ag1]
gi|394732810|gb|EJF32456.1| polynucleotide phosphorylase/polyadenylase [Enterobacter sp. Ag1]
Length = 709
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVHPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTAEELKTSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN LV G+ + +W P ++
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIKEINALVAEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I KQ R I D+ ++L E+ ++D +++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITEKQERYAQVDVIKADVIATLT-AEDESLDAAELSDILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R +IL LRID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRILAGELRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQTLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGG+ IR LTEETGT I+I D+G + IA+
Sbjct: 540 AIDAPRGDISEFAPRIHTIKINPDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|420375620|ref|ZP_14875470.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
1235-66]
gi|391311691|gb|EIQ69323.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
1235-66]
Length = 711
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AINEL + G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPELD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|365103232|ref|ZP_09333264.1| polyribonucleotide nucleotidyltransferase [Citrobacter freundii
4_7_47CFAA]
gi|363645571|gb|EHL84834.1| polyribonucleotide nucleotidyltransferase [Citrobacter freundii
4_7_47CFAA]
Length = 710
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AINEL + G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKLRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPELD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|365847658|ref|ZP_09388142.1| polyribonucleotide nucleotidyltransferase [Yokenella regensburgei
ATCC 43003]
gi|364571909|gb|EHM49479.1| polyribonucleotide nucleotidyltransferase [Yokenella regensburgei
ATCC 43003]
Length = 730
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/707 (53%), Positives = 532/707 (75%), Gaps = 4/707 (0%)
Query: 50 HHSRRGLI---MMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILAT 106
++R GL+ +K L N I++ F+YG + +++E G +ARQAT++V+V+++DT + T
Sbjct: 3 RYTRSGLLPLNYVKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVNMDDTAVFVT 62
Query: 107 VVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLF 166
VV K +FFPLTV+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLF
Sbjct: 63 VVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLF 122
Query: 167 PEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYIL 226
PEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+L
Sbjct: 123 PEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVL 182
Query: 227 NPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELV 286
NPT E+L S LDL+VAGTE A++ VESE++ L ED +L A++FGHE+ +I I IN+LV
Sbjct: 183 NPTKEELVSSKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLV 242
Query: 287 QNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID 346
+ G+ + +W P V D L +++ ++E ++ AY+I +KQ R +I ++ ++L+
Sbjct: 243 KEAGKPRWDWQPEVVDAALNARVAALAESRLSDAYRITDKQERYAQVDSIKSEVIATLV- 301
Query: 347 NENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSL 406
E+ +D N++ IL+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+L
Sbjct: 302 AEDEALDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSAL 361
Query: 407 FTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIG 466
FTRG+TQALV ATLGT+RD Q ID +MGE TDSF+ HYN PP++ G+ G +G PKRREIG
Sbjct: 362 FTRGETQALVTATLGTARDAQIIDEIMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIG 421
Query: 467 HGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVA 526
HGRLAKR +L V+P ++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VA
Sbjct: 422 HGRLAKRGVLAVMPTADEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVA 481
Query: 527 GIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIA 586
GIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+A
Sbjct: 482 GIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVA 541
Query: 587 LYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEE 646
L +AK +IL M+ + + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEE
Sbjct: 542 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEE 601
Query: 647 TGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRIL 706
TGT I+I D+G + IA+ + Q A RRIE++T +++G++Y G V R+ DFGA + I
Sbjct: 602 TGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIG 661
Query: 707 SGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 662 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 708
>gi|392980847|ref|YP_006479435.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. dissolvens SDM]
gi|392326780|gb|AFM61733.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. dissolvens SDM]
Length = 712
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I INELV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N+++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKDETIATLV-AEDETLDANELSEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|423122289|ref|ZP_17109973.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5246]
gi|376392615|gb|EHT05278.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5246]
Length = 711
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 523/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I IN+LV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++LI E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQIDVIKAETIATLI-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E +R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTTE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|62181793|ref|YP_218210.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161616288|ref|YP_001590253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|224585080|ref|YP_002638879.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238910077|ref|ZP_04653914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|374979306|ref|ZP_09720645.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|375116134|ref|ZP_09761304.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|375120766|ref|ZP_09765933.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|375125057|ref|ZP_09770221.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|378956896|ref|YP_005214383.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378985879|ref|YP_005249035.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|379702543|ref|YP_005244271.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|383497937|ref|YP_005398626.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|386592968|ref|YP_006089368.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|409246995|ref|YP_006887697.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|416423857|ref|ZP_11691191.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|416433548|ref|ZP_11697008.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|416440923|ref|ZP_11701233.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|416447951|ref|ZP_11706155.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|416454517|ref|ZP_11710367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|416460963|ref|ZP_11715071.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|416462677|ref|ZP_11715623.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|416475249|ref|ZP_11720542.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416492617|ref|ZP_11727546.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|416498682|ref|ZP_11730438.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416505804|ref|ZP_11734150.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|416516087|ref|ZP_11738965.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|416526950|ref|ZP_11742788.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|416534117|ref|ZP_11746935.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|416546605|ref|ZP_11753999.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|416553505|ref|ZP_11757756.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|416557684|ref|ZP_11759689.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|416568338|ref|ZP_11764690.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|416577484|ref|ZP_11769820.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|416586130|ref|ZP_11775375.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|416589304|ref|ZP_11776956.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|416600919|ref|ZP_11784682.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|416605393|ref|ZP_11786881.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|416614874|ref|ZP_11793074.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|416629764|ref|ZP_11800327.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|416638411|ref|ZP_11803882.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|416659227|ref|ZP_11814705.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|416670507|ref|ZP_11820145.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|416678864|ref|ZP_11822795.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|416699910|ref|ZP_11828924.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|416706493|ref|ZP_11831705.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|416714043|ref|ZP_11837494.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|416718688|ref|ZP_11840796.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|416725821|ref|ZP_11846044.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|416732946|ref|ZP_11850037.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|416736432|ref|ZP_11852059.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|416750625|ref|ZP_11859795.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|416754912|ref|ZP_11861704.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|416765636|ref|ZP_11868941.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|416771443|ref|ZP_11872708.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|418482450|ref|ZP_13051466.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|418488870|ref|ZP_13056264.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|418494316|ref|ZP_13060770.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|418500509|ref|ZP_13066905.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|418505780|ref|ZP_13072126.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|418507278|ref|ZP_13073602.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|418514495|ref|ZP_13080695.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
gi|418524406|ref|ZP_13090391.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|418759829|ref|ZP_13316006.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|418765956|ref|ZP_13322035.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|418771282|ref|ZP_13327289.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|418773993|ref|ZP_13329966.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|418778062|ref|ZP_13333976.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|418786360|ref|ZP_13342176.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|418788880|ref|ZP_13344672.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|418794387|ref|ZP_13350108.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|418797587|ref|ZP_13353273.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|418802003|ref|ZP_13357635.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|418806489|ref|ZP_13362061.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|418810649|ref|ZP_13366189.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|418831227|ref|ZP_13386185.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|418837487|ref|ZP_13392361.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|418842301|ref|ZP_13397111.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|418847003|ref|ZP_13401768.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|418851459|ref|ZP_13406171.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|418855932|ref|ZP_13410580.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|418857696|ref|ZP_13412321.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|418862829|ref|ZP_13417368.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|418869507|ref|ZP_13423940.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|419786783|ref|ZP_14312498.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|419793159|ref|ZP_14318782.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|438145440|ref|ZP_20875838.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Pullorum str. ATCC 9120]
gi|15029403|gb|AAK81870.1|AF399929_1 polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|62129426|gb|AAX67129.1| polynucleotide phosphorylase, member of mRNA degradosome
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161365652|gb|ABX69420.1| hypothetical protein SPAB_04093 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|224469608|gb|ACN47438.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|312914308|dbj|BAJ38282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320087729|emb|CBY97493.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321225966|gb|EFX51020.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322615287|gb|EFY12208.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618354|gb|EFY15245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322622841|gb|EFY19685.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322626837|gb|EFY23634.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631406|gb|EFY28166.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635327|gb|EFY32041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322643462|gb|EFY40025.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647102|gb|EFY43603.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648905|gb|EFY45350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322655097|gb|EFY51408.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657700|gb|EFY53968.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664196|gb|EFY60394.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322667479|gb|EFY63641.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674727|gb|EFY70819.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322675640|gb|EFY71713.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682276|gb|EFY78299.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322684879|gb|EFY80877.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322716280|gb|EFZ07851.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|323131642|gb|ADX19072.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|323199033|gb|EFZ84130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323204267|gb|EFZ89276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323211333|gb|EFZ96177.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214725|gb|EFZ99474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221205|gb|EGA05631.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323224054|gb|EGA08347.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230297|gb|EGA14416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323233273|gb|EGA17367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323239310|gb|EGA23360.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242439|gb|EGA26465.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323246949|gb|EGA30915.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323254118|gb|EGA37938.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323255235|gb|EGA39012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262698|gb|EGA46254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264008|gb|EGA47516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269394|gb|EGA52849.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326625033|gb|EGE31378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. SD3246]
gi|326629307|gb|EGE35650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|357207507|gb|AET55553.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|363555621|gb|EHL39845.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|363556605|gb|EHL40818.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|363562825|gb|EHL46914.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|363562916|gb|EHL47003.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|363567741|gb|EHL51739.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|363577683|gb|EHL61502.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|363578337|gb|EHL62148.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|366062134|gb|EHN26371.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|366063481|gb|EHN27699.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|366068087|gb|EHN32235.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|366068964|gb|EHN33096.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|366069251|gb|EHN33376.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|366078746|gb|EHN42744.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
gi|366081586|gb|EHN45529.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|372207265|gb|EHP20764.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|380464758|gb|AFD60161.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|383800009|gb|AFH47091.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|392617138|gb|EIW99563.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|392620726|gb|EIX03092.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|392733810|gb|EIZ91001.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|392738674|gb|EIZ95814.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|392745470|gb|EJA02503.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|392748324|gb|EJA05311.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|392753033|gb|EJA09973.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|392756526|gb|EJA13422.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|392761777|gb|EJA18596.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|392761938|gb|EJA18756.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|392769026|gb|EJA25772.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|392779455|gb|EJA36124.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|392781597|gb|EJA38238.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|392783106|gb|EJA39736.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|392799007|gb|EJA55276.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|392800423|gb|EJA56661.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|392806872|gb|EJA62956.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|392809474|gb|EJA65511.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|392817606|gb|EJA73516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|392820282|gb|EJA76132.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|392834226|gb|EJA89836.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|392834765|gb|EJA90367.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|392835970|gb|EJA91558.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|434938823|gb|ELL45728.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Pullorum str. ATCC 9120]
Length = 721
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 524/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 11 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 70
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 71 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 130
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 131 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 190
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 191 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 250
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 251 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLI-AEDETLDANELGEILHA 309
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 310 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 369
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 370 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 429
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 430 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 489
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 490 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 549
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 550 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 609
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 610 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 669
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 670 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 699
>gi|386743797|ref|YP_006216976.1| polynucleotide phosphorylase/polyadenylase [Providencia stuartii
MRSN 2154]
gi|384480490|gb|AFH94285.1| polynucleotide phosphorylase/polyadenylase [Providencia stuartii
MRSN 2154]
Length = 707
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +SIE G IARQAT++V+V+++DT + T V+ K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E++YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG+LNEIQI+ V+SV
Sbjct: 61 VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VG+I+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ L E+ +L A++FGH++ +I I INELV+ G++K +W P ++
Sbjct: 181 GTESAVLMVESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEKWDWQPEPVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L K+ ++E ++ AY+I KQ R I +++ ++++ E+ +D+ ++ IL +
Sbjct: 241 ALRDKVAALAESRMGDAYRITEKQERYEQVDLIKEEVTAAIV-AEDENVDVAEVADILAN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R +++ RID R + +R + +RT +LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKQVVRSRVIRGEPRIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE+TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR ++ V+P++
Sbjct: 360 RDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPDHA 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ ++++S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINSPRDDISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T V++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEVEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 660 EKVTDYLQMGQEVPVKVLEIDRQGRIRLSM 689
>gi|381405879|ref|ZP_09930563.1| polynucleotide phosphorylase/polyadenylase [Pantoea sp. Sc1]
gi|380739078|gb|EIC00142.1| polynucleotide phosphorylase/polyadenylase [Pantoea sp. Sc1]
Length = 711
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S LPF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVHPDIVAMIGASAALSLSGLPFNGPIGSARVGYINDQYVLNPTADELKQSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ ++ I IN LV G+ + +W P +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEAANT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LIS++ ++E +I AY+I +KQ R I + ++L+ E+ T+D +I+ I++
Sbjct: 241 PLISRVAALAEARISDAYRITDKQERYSQVGVIKDETIAALL-AEDETLDSAEISDIVHS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL+ RID R + IR + +RTG+LPRTHGSSLFTRG+TQALV ATLGT+
Sbjct: 300 LEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRTEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 689
>gi|422969671|ref|ZP_16973464.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA124]
gi|371601144|gb|EHN89912.1| polyribonucleotide nucleotidyltransferase [Escherichia coli TA124]
Length = 711
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ +++ ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAKARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|423141810|ref|ZP_17129448.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
gi|379050982|gb|EHY68874.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. houtenae str. ATCC BAA-1581]
Length = 721
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 524/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 11 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 70
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 71 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 130
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 131 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 190
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 191 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 250
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 251 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLI-AEDETLDANELGEILHA 309
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 310 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 369
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 370 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 429
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 430 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 489
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 490 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 549
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 550 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 609
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 610 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 669
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 670 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 699
>gi|423125945|ref|ZP_17113624.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5250]
gi|376398046|gb|EHT10674.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5250]
Length = 712
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN+LV+ G+ + +W P V D
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ ++D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLV-AEDESLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|215488482|ref|YP_002330913.1| polynucleotide phosphorylase [Escherichia coli O127:H6 str.
E2348/69]
gi|254782721|sp|B7UJ59.1|PNP_ECO27 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|215266554|emb|CAS10993.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O127:H6 str. E2348/69]
Length = 711
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPNGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|375257536|ref|YP_005016706.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca KCTC
1686]
gi|402840250|ref|ZP_10888719.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. OBRC7]
gi|365907014|gb|AEX02467.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca KCTC
1686]
gi|402287200|gb|EJU35660.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. OBRC7]
Length = 712
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 521/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN+LV+ G+ + +W P V D
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ +D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLV-AEDEALDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|432996934|ref|ZP_20185517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE218]
gi|433117049|ref|ZP_20302835.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE153]
gi|431503729|gb|ELH82464.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE218]
gi|431632248|gb|ELJ00551.1| polyribonucleotide nucleotidyltransferase [Escherichia coli KTE153]
Length = 711
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETSMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|16766580|ref|NP_462195.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56415214|ref|YP_152289.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197364144|ref|YP_002143781.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|205354186|ref|YP_002227987.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858532|ref|YP_002245183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|378452099|ref|YP_005239459.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|378701183|ref|YP_005183141.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378990593|ref|YP_005253757.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|418818265|ref|ZP_13373744.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|418823333|ref|ZP_13378742.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|419729821|ref|ZP_14256777.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|419732860|ref|ZP_14259764.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|419741321|ref|ZP_14268022.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|419742947|ref|ZP_14269616.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|419748979|ref|ZP_14275469.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|421360864|ref|ZP_15811140.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|421361116|ref|ZP_15811382.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|421369961|ref|ZP_15820136.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|421374405|ref|ZP_15824536.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|421378658|ref|ZP_15828737.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|421379654|ref|ZP_15829721.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|421384681|ref|ZP_15834704.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|421389677|ref|ZP_15839660.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|421396963|ref|ZP_15846888.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|421397821|ref|ZP_15847731.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|421405770|ref|ZP_15855595.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|421408704|ref|ZP_15858503.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|421411333|ref|ZP_15861099.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|421417732|ref|ZP_15867442.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|421421196|ref|ZP_15870865.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|421427427|ref|ZP_15877047.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|421431198|ref|ZP_15880784.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|421437256|ref|ZP_15886777.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|421441516|ref|ZP_15890985.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|421442829|ref|ZP_15892274.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|421447642|ref|ZP_15897039.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|421570366|ref|ZP_16016057.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|421574258|ref|ZP_16019883.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|421579333|ref|ZP_16024897.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|421582632|ref|ZP_16028165.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|421887001|ref|ZP_16318165.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|427554274|ref|ZP_18929145.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|427572043|ref|ZP_18933858.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|427592593|ref|ZP_18938659.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|427616658|ref|ZP_18943549.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|427640172|ref|ZP_18948426.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|427657523|ref|ZP_18953173.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|427662841|ref|ZP_18958139.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|427676999|ref|ZP_18962952.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|436633365|ref|ZP_20515635.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22704]
gi|436668329|ref|ZP_20517404.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|436793835|ref|ZP_20521878.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|436807211|ref|ZP_20527254.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436818102|ref|ZP_20534735.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436832325|ref|ZP_20536615.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436848115|ref|ZP_20539932.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436860884|ref|ZP_20548068.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867888|ref|ZP_20553042.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436869584|ref|ZP_20553725.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436877272|ref|ZP_20558397.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436891858|ref|ZP_20566558.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436899236|ref|ZP_20570647.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436902747|ref|ZP_20573211.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436915170|ref|ZP_20580017.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436919869|ref|ZP_20582650.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436925843|ref|ZP_20586196.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436932029|ref|ZP_20589378.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436946213|ref|ZP_20598041.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436955676|ref|ZP_20602551.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436966408|ref|ZP_20607077.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436970371|ref|ZP_20608901.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436979843|ref|ZP_20612988.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436993748|ref|ZP_20618541.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437009384|ref|ZP_20623761.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437022525|ref|ZP_20628474.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437028606|ref|ZP_20630698.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437042747|ref|ZP_20636260.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050422|ref|ZP_20640567.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061654|ref|ZP_20647020.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437066570|ref|ZP_20649632.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437072684|ref|ZP_20652601.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437083289|ref|ZP_20659032.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437098031|ref|ZP_20665486.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|437102356|ref|ZP_20666490.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|437118098|ref|ZP_20670161.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|437129774|ref|ZP_20676250.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|437141515|ref|ZP_20683199.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|437146403|ref|ZP_20686192.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|437153589|ref|ZP_20690695.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|437158226|ref|ZP_20693148.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|437169070|ref|ZP_20699463.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|437178544|ref|ZP_20704714.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|437181425|ref|ZP_20706539.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|437221272|ref|ZP_20713014.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|437260158|ref|ZP_20717558.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|437272297|ref|ZP_20724183.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|437281480|ref|ZP_20728614.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|437296762|ref|ZP_20732563.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|437316110|ref|ZP_20737798.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|437326512|ref|ZP_20740274.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|437342011|ref|ZP_20745134.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|437417769|ref|ZP_20754188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|437446010|ref|ZP_20758732.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|437463615|ref|ZP_20763297.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 1-1]
gi|437480822|ref|ZP_20768527.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|437495482|ref|ZP_20772758.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|437504790|ref|ZP_20775272.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|437538206|ref|ZP_20781905.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|437567338|ref|ZP_20787609.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|437580734|ref|ZP_20792137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|437588105|ref|ZP_20793745.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|437604842|ref|ZP_20799021.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|437619590|ref|ZP_20803742.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|437633841|ref|ZP_20806811.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648904 3-6]
gi|437665619|ref|ZP_20814770.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|437675654|ref|ZP_20816807.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|437700174|ref|ZP_20823761.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|437715690|ref|ZP_20828037.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
gi|437732971|ref|ZP_20831974.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|437748558|ref|ZP_20833730.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|437804366|ref|ZP_20838920.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|437818239|ref|ZP_20842892.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
gi|437991265|ref|ZP_20853785.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|438084930|ref|ZP_20858501.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|438100181|ref|ZP_20863822.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|438114811|ref|ZP_20870317.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|440763672|ref|ZP_20942709.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|440770550|ref|ZP_20949499.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
gi|440775105|ref|ZP_20953990.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
gi|445128664|ref|ZP_21380374.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|445141164|ref|ZP_21385277.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|445149567|ref|ZP_21389253.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|445179534|ref|ZP_21397971.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 20037]
gi|445226818|ref|ZP_21404065.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|445329584|ref|ZP_21413537.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|445344962|ref|ZP_21417927.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|445356905|ref|ZP_21421923.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
gi|452122898|ref|YP_007473146.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
gi|81361497|sp|Q5PL97.1|PNP_SALPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81521548|sp|Q8ZLT3.1|PNP_SALTY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611314|sp|A9N728.2|PNP_SALPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611318|sp|Q57JI3.2|PNP_SALCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702684|sp|B5QZV4.1|PNP_SALEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702685|sp|B5REN2.1|PNP_SALG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702686|sp|B5BGJ1.1|PNP_SALPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096718|sp|C0PZ50.2|PNP_SALPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|16421841|gb|AAL22154.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56129471|gb|AAV78977.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095621|emb|CAR61189.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205273967|emb|CAR38972.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710335|emb|CAR34693.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|267995478|gb|ACY90363.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159832|emb|CBW19351.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|332990140|gb|AEF09123.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|379983378|emb|CCF90438.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|381291999|gb|EIC33209.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|381296123|gb|EIC37231.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|381302212|gb|EIC43258.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|381312756|gb|EIC53550.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|381312975|gb|EIC53768.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|392786227|gb|EJA42784.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|392786677|gb|EJA43233.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|395981431|gb|EJH90653.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|395982084|gb|EJH91305.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|395993843|gb|EJI02933.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|395994529|gb|EJI03605.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|395994993|gb|EJI04058.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|396005829|gb|EJI14801.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|396009417|gb|EJI18350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|396017236|gb|EJI26102.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|396018313|gb|EJI27175.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|396021998|gb|EJI30812.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|396028119|gb|EJI36881.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|396032631|gb|EJI41350.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|396042567|gb|EJI51189.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|396042838|gb|EJI51458.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|396046359|gb|EJI54947.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|396050404|gb|EJI58929.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|396051782|gb|EJI60297.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|396055024|gb|EJI63516.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|396063673|gb|EJI72062.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|396071886|gb|EJI80202.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|396074536|gb|EJI82824.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|402521867|gb|EJW29199.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|402524361|gb|EJW31660.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|402525759|gb|EJW33045.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|402532812|gb|EJW40000.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|414015729|gb|EKS99529.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|414028817|gb|EKT11984.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|414030471|gb|EKT13570.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|414033319|gb|EKT16277.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|414043934|gb|EKT26401.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|414044452|gb|EKT26895.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|414049458|gb|EKT31669.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|414056981|gb|EKT38755.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|434959503|gb|ELL52950.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22704]
gi|434963048|gb|ELL56184.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|434968167|gb|ELL60919.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434970646|gb|ELL63207.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434980924|gb|ELL72811.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434985328|gb|ELL77015.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434990991|gb|ELL82519.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434993040|gb|ELL84479.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435002724|gb|ELL93775.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435005987|gb|ELL96907.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435008773|gb|ELL99584.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435012371|gb|ELM03046.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435014129|gb|ELM04721.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|435019177|gb|ELM09621.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435023252|gb|ELM13548.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435029704|gb|ELM19762.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435035785|gb|ELM25630.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435038105|gb|ELM27887.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435044542|gb|ELM34225.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435046052|gb|ELM35678.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435046818|gb|ELM36433.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435058174|gb|ELM47529.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435065425|gb|ELM54531.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435067208|gb|ELM56269.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435068399|gb|ELM57427.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435076462|gb|ELM65245.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435083397|gb|ELM71998.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435084642|gb|ELM73227.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088138|gb|ELM76595.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435093126|gb|ELM81466.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435097376|gb|ELM85635.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435106675|gb|ELM94692.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|435108862|gb|ELM96827.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435110214|gb|ELM98147.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435122981|gb|ELN10485.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|435126994|gb|ELN14388.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|435127683|gb|ELN15043.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|435133675|gb|ELN20833.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|435136648|gb|ELN23738.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|435141340|gb|ELN28282.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|435148798|gb|ELN35512.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|435152011|gb|ELN38642.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|435152869|gb|ELN39491.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|435164809|gb|ELN50881.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|435166385|gb|ELN52368.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|435169008|gb|ELN54818.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|435169243|gb|ELN55042.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|435179189|gb|ELN64339.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|435180586|gb|ELN65694.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|435192439|gb|ELN76970.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|435193677|gb|ELN78156.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|435200707|gb|ELN84678.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|435202404|gb|ELN86258.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|435210399|gb|ELN93670.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|435217998|gb|ELO00405.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|435218892|gb|ELO01293.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 1-1]
gi|435226829|gb|ELO08382.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|435235078|gb|ELO15931.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|435235876|gb|ELO16658.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|435239052|gb|ELO19660.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|435240985|gb|ELO21375.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|435256785|gb|ELO36079.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|435258250|gb|ELO37517.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|435258870|gb|ELO38130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|435265206|gb|ELO44091.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|435274235|gb|ELO52359.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|435277467|gb|ELO55416.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|435281895|gb|ELO59542.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648904 3-6]
gi|435284993|gb|ELO62410.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
gi|435287368|gb|ELO64571.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|435302964|gb|ELO78891.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|435307913|gb|ELO82943.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
gi|435311997|gb|ELO86012.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|435319335|gb|ELO92174.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|435325141|gb|ELO97015.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|435328635|gb|ELP00101.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|435336756|gb|ELP06560.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|436411248|gb|ELP09201.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
gi|436411719|gb|ELP09667.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
gi|436419304|gb|ELP17182.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|444851373|gb|ELX76464.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|444854712|gb|ELX79771.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|444857809|gb|ELX82807.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|444867444|gb|ELX92130.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|444872487|gb|ELX96825.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 20037]
gi|444878934|gb|ELY03046.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|444879628|gb|ELY03723.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|444886863|gb|ELY10604.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
gi|451911902|gb|AGF83708.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
Length = 711
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 524/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLI-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|429091564|ref|ZP_19154232.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
1210]
gi|426743894|emb|CCJ80345.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
1210]
Length = 750
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/692 (54%), Positives = 520/692 (75%), Gaps = 2/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
++Y E+ YAAGRIPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I IN+LV+ G+ + +W P ++
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCIL 361
TL +++ ++E ++ AY+I +KQ R I D+ ++L E +D N++ IL
Sbjct: 241 TLNARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDIL 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 301 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID LMGE TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 361 TERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPA 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+
Sbjct: 421 ADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + I
Sbjct: 541 EQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ K
Sbjct: 601 AATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 661 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 692
>gi|375003146|ref|ZP_09727486.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
gi|353077834|gb|EHB43594.1| polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Infantis str. SARB27]
Length = 721
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 524/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 11 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 70
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 71 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 130
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 131 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 190
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 191 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 250
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 251 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLI-AEDETLDANELGEILHA 309
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 310 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 369
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 370 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 429
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 430 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 489
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 490 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 549
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 550 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 609
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 610 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 669
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 670 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 699
>gi|311277863|ref|YP_003940094.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
SCF1]
gi|308747058|gb|ADO46810.1| polyribonucleotide nucleotidyltransferase [Enterobacter cloacae
SCF1]
Length = 711
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTPEELKVSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A+++GHE+ +I I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVYGHEQQQIVIQNINELVKEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ +AY+I +KQ R I + +L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSEAYRITDKQERYAQVDVIKSETIDTLV-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID +MGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQIIDEIMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTME 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 QFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ NQ+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMNQEVPVKVLEVDRQGRIRLSI 689
>gi|423105041|ref|ZP_17092743.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5242]
gi|376381807|gb|EHS94543.1| polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca
10-5242]
Length = 712
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 521/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN+LV+ G+ + +W P V D
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ +D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLV-AEDEALDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|417429166|ref|ZP_12160989.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|353615662|gb|EHC67127.1| Polyribonucleotide nucleotidyltransferase [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
Length = 721
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 524/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + I++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 11 LLNPIVRKFQYGQHTITLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 70
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 71 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 130
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 131 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 190
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 191 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 250
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 251 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLI-AEDETLDANELGEILHA 309
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 310 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 369
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 370 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 429
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 430 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 489
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 490 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 549
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 550 AINVPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 609
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 610 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 669
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 670 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 699
>gi|377577026|ref|ZP_09806009.1| polyribonucleotide nucleotidyltransferase [Escherichia hermannii
NBRC 105704]
gi|377541554|dbj|GAB51174.1| polyribonucleotide nucleotidyltransferase [Escherichia hermannii
NBRC 105704]
Length = 714
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/692 (54%), Positives = 522/692 (75%), Gaps = 2/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVHPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKNSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN LV G+ + +W P ++
Sbjct: 181 GTEGAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCIL 361
L S++ ++E ++ AY+I +KQ R I D+ ++L E +D N++N IL
Sbjct: 241 ALNSRVAALAEARLSDAYRITDKQERYSQIDAIKSDVIAALQAEQAEGDVLDENELNDIL 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 301 HAIEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR ++ V+P+
Sbjct: 361 TARDAQSLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPD 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+
Sbjct: 421 AERFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILSVM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + I
Sbjct: 541 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ K
Sbjct: 601 AATDGDKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +TD+L+ NQ+V VKVL +D +GRI+LS+
Sbjct: 661 RVEKVTDYLQMNQEVPVKVLEVDRQGRIRLSI 692
>gi|187610338|sp|A8AQ53.2|PNP_CITK8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 711
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 526/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I IN+LV+ G+ + +W ++
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQQEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIAALV-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|386080901|ref|YP_005994426.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
PA13]
gi|354990082|gb|AER34206.1| polyribonucleotide nucleotidyltransferase Pnp [Pantoea ananatis
PA13]
Length = 709
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S AL++S LPF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ +I I IN LV G+ + +W P +
Sbjct: 181 GTQNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINSLVAEAGKPRWDWQPEQANT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LIS++ ++E +I AY+I +KQ R I + ++L+ E+ ++D +I I++
Sbjct: 241 ALISRVAALAETRISDAYRITDKQERYTQVGVIKDETIAALL-AEDESLDAAEIGDIVHS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL+ RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ +K V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVAGIAMGLVKEDDKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI+ KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 689
>gi|170727889|ref|YP_001761915.1| polynucleotide phosphorylase/polyadenylase [Shewanella woodyi ATCC
51908]
gi|226702688|sp|B1KRQ5.1|PNP_SHEWM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169813236|gb|ACA87820.1| Polyribonucleotide nucleotidyltransferase [Shewanella woodyi ATCC
51908]
Length = 702
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/689 (55%), Positives = 517/689 (75%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I+PD+ S+IG S ALSIS+LPF GPLGVA+VGY +G+Y+LNP QL +S LDL+VAG
Sbjct: 121 PEINPDVISMIGTSAALSISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ LPE+++L +++GH++ ++ INAINEL G+ K +W +D
Sbjct: 181 TQGAVLMVESEAASLPEEVMLGGVVYGHDQQQVVINAINELTAEAGKTKWDWTAPAEDTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+ KI ++E ++ AYQI +K R + + L++ EN +D+ +++ +L L
Sbjct: 241 LVEKIKGLAEAELTNAYQIADKHERRDAVIALKNAAVAKLVE-ENADVDLREVDKLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + +R +++ G+LPRTHGSSLFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRSRIISGSPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QK+D++MGE+T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P +
Sbjct: 360 DAQKVDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S APR+ T+KI+P KIRDVIGKGG+TIR LTEETGT I++ D+G + IAS
Sbjct: 540 ISGHREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASA 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G VY G V+R+ DFGA + IL GKDGL+HISQI+ +RV
Sbjct: 600 NGEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKV+ +D +GR++LSM
Sbjct: 660 NVSDYLQVGQEVKVKVMEVDRQGRVRLSM 688
>gi|397163478|ref|ZP_10486941.1| polyribonucleotide nucleotidyltransferase [Enterobacter
radicincitans DSM 16656]
gi|396094944|gb|EJI92491.1| polyribonucleotide nucleotidyltransferase [Enterobacter
radicincitans DSM 16656]
Length = 711
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 524/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKASKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I IN+LV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLT-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+
Sbjct: 360 RDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDAE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|213052977|ref|ZP_03345855.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213425438|ref|ZP_03358188.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213582311|ref|ZP_03364137.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213609547|ref|ZP_03369373.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213646150|ref|ZP_03376203.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|289825796|ref|ZP_06544964.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|378961375|ref|YP_005218861.1| hypothetical protein STBHUCCB_33840 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|374355247|gb|AEZ47008.1| hypothetical protein STBHUCCB_33840 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 721
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 523/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 11 LLNPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 70
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 71 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 130
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 131 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 190
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 191 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 250
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 251 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLI-AEDETLDANELGEILHA 309
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 310 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 369
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 370 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 429
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 430 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 489
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 490 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 549
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 550 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 609
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 610 TDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 669
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 670 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 699
>gi|420130131|ref|ZP_14638635.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10224]
gi|394380396|gb|EJE58140.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
O26:H11 str. CVM10224]
Length = 711
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLF EG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFLEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|340000841|ref|YP_004731725.1| polynucleotide phosphorylase [Salmonella bongori NCTC 12419]
gi|339514203|emb|CCC31966.1| polynucleotide phosphorylase [Salmonella bongori NCTC 12419]
Length = 711
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINEQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + +L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAQLAESRLSDAYRITDKQERYAQVDVIKSETIETLM-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|397660147|ref|YP_006500849.1| Polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca E718]
gi|394348219|gb|AFN34340.1| Polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca E718]
Length = 712
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 521/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN+LV+ G+ + +W P V D
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ +D N++ IL+
Sbjct: 241 ALNARVAVLAESRLSDAYRITDKQERYAQVDVIKSETIATLV-AEDEALDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAQHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|345300967|ref|YP_004830325.1| polyribonucleotide nucleotidyltransferase [Enterobacter asburiae
LF7a]
gi|345094904|gb|AEN66540.1| Polyribonucleotide nucleotidyltransferase [Enterobacter asburiae
LF7a]
Length = 712
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 524/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I IN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ +D N+++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLV-AEDEALDANELSEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|378446669|ref|YP_005234301.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|261248448|emb|CBG26285.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
Length = 711
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 523/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+ A
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVAA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLI-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|551833|gb|AAA83905.1| polynucleotide phosphorilase [Escherichia coli]
Length = 711
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 527/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATL T+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLRTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LA +DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLASMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|449309805|ref|YP_007442161.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
SP291]
gi|187610329|sp|A7MIN6.2|PNP_ENTS8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|449099838|gb|AGE87872.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
SP291]
Length = 711
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/692 (54%), Positives = 519/692 (75%), Gaps = 2/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
++Y E+ YAAGRIPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I IN+LV+ G+ + +W P ++
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCIL 361
L +++ ++E ++ AY+I +KQ R I D+ ++L E +D N++ IL
Sbjct: 241 ALNARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDIL 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 301 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID LMGE TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 361 TERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPA 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+
Sbjct: 421 ADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + I
Sbjct: 541 EQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ K
Sbjct: 601 AATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 661 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 692
>gi|398792260|ref|ZP_10552922.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. YR343]
gi|398213574|gb|EJN00167.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. YR343]
Length = 712
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 520/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ISRLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPVRPLFPEGFINEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S LPF GP+G A+VGYI+ +Y+LNPT +++ +S L+L+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADEINESRLNLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L E+ +L A+++GH++ +I I IN LV G+ + +W P+ +
Sbjct: 181 GTQNAVLMVESEADILTEEQMLGAVVYGHDQQQIVIENINALVAEAGKPRWDWQPLPTND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+++ ++E I AY+I +KQ R T KD + + E+ T+D DI I++D
Sbjct: 241 ALIARVTALAEAGISDAYRITDKQER-YTQVGAVKDATIAALQAEDETLDAGDIADIVHD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +I+ RID R + IR + +RTG+LPRTHGSSLFTRG+TQALV ATLGT+
Sbjct: 300 LEKSVVRSRIIRGEPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNLDELMGERTDSFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQA 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRQEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S+ +EA RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDSLKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRVRLSI 689
>gi|16762047|ref|NP_457664.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143536|ref|NP_806878.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|81512815|sp|Q8Z3I0.1|PNP_SALTI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|25311835|pir||AD0901 polynucleotide phosphorylase [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16504350|emb|CAD07802.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139170|gb|AAO70738.1| polynucleotide phosphorylase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 711
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 523/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLI-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis
z3032]
gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
z3032]
Length = 711
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/692 (54%), Positives = 519/692 (75%), Gaps = 2/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
++Y E+ YAAGRIPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKASKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I IN+LV+ G+ + +W P ++
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCIL 361
L +++ ++E ++ AY+I +KQ R I D+ ++L E +D N++ IL
Sbjct: 241 ALNARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDIL 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 301 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID LMGE TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 361 TERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPA 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+
Sbjct: 421 ADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + I
Sbjct: 541 EQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ K
Sbjct: 601 AATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 661 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 692
>gi|187611317|sp|A9MP39.2|PNP_SALAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 711
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + L E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLT-AEDDTLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|268592821|ref|ZP_06127042.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
1131]
gi|291311606|gb|EFE52059.1| polyribonucleotide nucleotidyltransferase [Providencia rettgeri DSM
1131]
Length = 707
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 521/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +SIE G IARQA+++V+V+++DT + T V+ K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG+ NEIQI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S L++S +PF GP+G A+VG+I+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L E+ +L A++FGH++ ++ I INELV+ G++K +W P ++
Sbjct: 181 GTDNAVLMVESEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ AY+I KQ R I +++ + L+ E+ +D++++ IL
Sbjct: 241 ALHDRVAQLAESRMGDAYRITEKQERYAQVDLIKEEVTAVLV-AEDENVDVSEVTDILAS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R +++ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKQVVRSRVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE+TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P++
Sbjct: 360 RDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDHA 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGEDFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINGPREEISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE +T V++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGIKAKEAIRRIEDITAEVEVGRIYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 660 EKVTDYLQMGQEVPVKVLEIDRQGRIRLSM 689
>gi|422032546|ref|ZP_16378655.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
gi|414016150|gb|EKS99934.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
Length = 711
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 523/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLI-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL + K +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQDKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|161506151|ref|YP_001573263.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160867498|gb|ABX24121.1| hypothetical protein SARI_04342 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 721
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 11 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 70
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 71 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 130
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 131 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 190
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 191 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 250
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + L E+ T+D N++ IL+
Sbjct: 251 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLT-AEDDTLDANELGEILHA 309
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 310 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 369
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 370 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 429
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 430 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 489
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 490 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 549
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 550 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 609
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 610 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 669
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 670 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 699
>gi|417086866|ref|ZP_11953963.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
cloneA_i1]
gi|355350332|gb|EHF99532.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli
cloneA_i1]
Length = 711
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 526/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV TLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTPTLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q + LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLAELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|238793025|ref|ZP_04636654.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
29909]
gi|238727625|gb|EEQ19150.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
29909]
Length = 706
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 521/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE++ L ED +L A+IFGHE+ ++ I IN LV VG+ K +W ++
Sbjct: 181 GTADAVLMVESEAQILSEDQMLGAVIFGHEQQQVVIENINALVAEVGKPKWDWHAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I KQ R I D+ +L+ + ++D ++I IL D
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDE-SLDASEIQDILGD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRIRLSI 689
>gi|53804618|ref|YP_113771.1| polynucleotide phosphorylase [Methylococcus capsulatus str. Bath]
gi|81682222|sp|Q609C6.1|PNP_METCA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|53758379|gb|AAU92670.1| polyribonucleotide nucleotidyltransferase [Methylococcus capsulatus
str. Bath]
Length = 691
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/689 (56%), Positives = 518/689 (75%), Gaps = 2/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K F+YG++ +S E GEIARQA ++V+V + TV+L TVV KD + +FFPLTV
Sbjct: 1 MNPIRKQFQYGAHTVSFETGEIARQADAAVMVDMAGTVVLVTVVGRKDASPHGDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EKAYAAGRIPG FFKREG+PSE+ET+ +RLIDRPIRPLFP+G+ +E+Q+V V+S+N
Sbjct: 61 NYQEKAYAAGRIPGGFFKREGRPSEKETLTARLIDRPIRPLFPDGFTHEVQVVATVMSLN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++DPDI S++G S AL++S LPF GP+G A+VG+++G Y+LNP ++ S LDL+VAG
Sbjct: 121 PEVDPDIPSMLGASAALTLSGLPFKGPIGAARVGFVNGAYVLNPDGSVVEGSELDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+K LPE+++L A++FGHE+M+ AI AINEL + VG W+P D
Sbjct: 181 TANAVLMVESEAKILPEEVMLGAVVFGHEQMQTAIRAINELAEEVGVTPWPWEPSAVDAA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L++ + ++ + + Y I +KQ+R K + K + +L D N + + L
Sbjct: 241 LVAAVDELARAGLGEGYNIADKQLRQQKLKEVRKAVIDAL--TAEGAHDENAVKRQIEKL 298
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +I+R IL G RID R ++ +RPI+IRTG+LPRTHGS+LFTRG+TQALVVATLGT R
Sbjct: 299 EEEIVRSNILHHGKRIDGRDLSTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGR 358
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDAL GE+ ++FMLHYN PP+ G+ G IG PKRREIGHGRLAKR + ++P ++
Sbjct: 359 DAQLIDALEGEYKENFMLHYNFPPYCVGETGAIGSPKRREIGHGRLAKRGVQAIMPTMDE 418
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y IR+VSEITESNGSSSMASVCG LAL+DAGVP VAGIAMGLI +GE+ +LSD
Sbjct: 419 FPYVIRIVSEITESNGSSSMASVCGSSLALMDAGVPTKGAVAGIAMGLILEGEEFAVLSD 478
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
I+GDED GDMDFKVAGT +G+TALQMDIKI GIT +I++ AL++A++G +IL+KM
Sbjct: 479 IMGDEDHLGDMDFKVAGTRDGVTALQMDIKIDGITPEIMRQALHQAREGRMHILDKMAQA 538
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P ++E+S +APR+ + IDPSKIR+VIGKGG+TIR +TEETGT IDI+D+G++ IAS
Sbjct: 539 LPAPRSEMSDYAPRITSFTIDPSKIREVIGKGGATIRAITEETGTSIDISDDGVVKIASV 598
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +G EA+RRIE +T V++GKVY G V RL DFGA + IL GKDGL+HISQIS + V
Sbjct: 599 DKQAGLEARRRIEDITAEVEVGKVYEGKVARLMDFGAFVTILPGKDGLVHISQISDEHVE 658
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E V+VKVL ID +GR++LSM
Sbjct: 659 KVSDKLAEGDMVKVKVLEIDRQGRVRLSM 687
>gi|407716832|ref|YP_006838112.1| polyribonucleotide nucleotidyltransferase [Cycloclasticus sp. P1]
gi|407257168|gb|AFT67609.1| Polyribonucleotide nucleotidyltransferase [Cycloclasticus sp. P1]
Length = 688
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/689 (56%), Positives = 512/689 (74%), Gaps = 5/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K F++G +S E GEIARQA +VLV I+ T++L T V ++ +FFPLTV
Sbjct: 1 MNSVKKEFQFGHQTVSFETGEIARQADGAVLVEIDGTIVLVTAVGKREGGENNSFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP+GY NE Q++ V+S+N
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGYKNETQVIATVISLN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++DPDI +++G S AL+IS LPF GP+G A+VGYI+G+Y LNP+ L +S LDL+VAG
Sbjct: 121 PEVDPDIPALLGASAALAISGLPFEGPIGAARVGYINGEYALNPSKNALAESKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ LPEDI+L A+ FGHE+M+ AI AINEL + VG+ ++ W KD+T
Sbjct: 181 TEDAVLMVESEADCLPEDIMLGAVTFGHEQMQAAIQAINELAEQVGKPRMEWVAPEKDQT 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+ K+ +++ I AY I K R + + + + + L D D ++ I L
Sbjct: 241 LLEKVADLATAGIADAYTILVKLDRQVKLQELRTSVLAQLEDE-----DPEEVKEIFSSL 295
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K +R+ +L RID R ++ +RPI +RTG+LPR HGS+LFTRG+TQALVVATLGT R
Sbjct: 296 EKKHVRELVLSTKKRIDGRDLSTVRPIHVRTGVLPRAHGSALFTRGETQALVVATLGTDR 355
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDA+ GE+ D FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + VLP+
Sbjct: 356 DAQMIDAVEGEYRDHFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVLPSQED 415
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F+Y +R+V+E+TESNGSSSMAS CG LAL+DAGVPI VAGIAMGLIK+G++ +LSD
Sbjct: 416 FSYVLRVVAEVTESNGSSSMASTCGTSLALMDAGVPIKSPVAGIAMGLIKEGDEFAVLSD 475
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKV+GT +G+TALQMDIKI GIT++I+ AL +AK G +ILEKM ++
Sbjct: 476 ILGDEDHLGDMDFKVSGTDSGVTALQMDIKIQGITHEIMSNALEQAKAGRLHILEKMNSD 535
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + + E+S FAPR++T+KIDP+KIRDVIGKGG TIR +TEETG IDI DEGI+ +AS
Sbjct: 536 LSQAREEMSDFAPRILTLKIDPAKIRDVIGKGGVTIRAITEETGASIDITDEGIVKVASV 595
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +G++A +RIE +T V++GK+Y G V+RL DFGA + IL GKDGL+HISQIS +RV
Sbjct: 596 DREAGEKALKRIEDITAEVEVGKIYEGKVVRLMDFGAFVSILPGKDGLVHISQISEERVE 655
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E V VKVL +D +GR++LSM
Sbjct: 656 KVSDKLSEGDVVNVKVLEVDRQGRVRLSM 684
>gi|22124608|ref|NP_668031.1| polynucleotide phosphorylase [Yersinia pestis KIM10+]
gi|45440447|ref|NP_991986.1| polynucleotide phosphorylase [Yersinia pestis biovar Microtus str.
91001]
gi|167399496|ref|ZP_02305020.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|21957412|gb|AAM84282.1|AE013671_9 polynucleotide phosphorylase [Yersinia pestis KIM10+]
gi|45435304|gb|AAS60863.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Microtus str. 91001]
gi|167052000|gb|EDR63408.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
Length = 737
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/701 (54%), Positives = 521/701 (74%), Gaps = 1/701 (0%)
Query: 53 RRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKD 112
R G KG L II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K
Sbjct: 22 RSGTAKHKGTILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKK 81
Query: 113 PTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLN 172
+FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LN
Sbjct: 82 AKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLN 141
Query: 173 EIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQ 232
E+Q++ V+SVNPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++
Sbjct: 142 EVQVIATVVSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDE 201
Query: 233 LKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQK 292
LK+S LDL+VAGT A++ VESE+ L E+ +L A++FGHE+ ++ I IN LV G+
Sbjct: 202 LKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKP 261
Query: 293 KVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI 352
K +W ++ L +++ ++E ++ AY+I KQ R I D+ +L+ ++ T+
Sbjct: 262 KWDWQAEPVNEALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TL 320
Query: 353 DINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDT 412
D +I IL +E ++R ++L RID R + IR + +RTGILPRTHGS+LFTRG+T
Sbjct: 321 DAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGET 380
Query: 413 QALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAK 472
QALV ATLGT+RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAK
Sbjct: 381 QALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAK 440
Query: 473 RALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGL 532
R +L V+P+ ++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL
Sbjct: 441 RGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 500
Query: 533 IKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKK 592
+K+G+ V+LSDILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK
Sbjct: 501 VKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKG 560
Query: 593 GLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQID 652
+IL M+ + + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+
Sbjct: 561 ARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIE 620
Query: 653 INDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGL 712
I D+G I IA+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL
Sbjct: 621 IEDDGTIKIAATDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGL 680
Query: 713 LHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+HISQI+ KRV +TD+L+ Q V VKV+ +D +GRI+LS+
Sbjct: 681 VHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSI 721
>gi|108808983|ref|YP_652899.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Antiqua]
gi|108780896|gb|ABG14954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Antiqua]
Length = 731
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/701 (54%), Positives = 521/701 (74%), Gaps = 1/701 (0%)
Query: 53 RRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKD 112
R G KG L II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K
Sbjct: 16 RSGTAKHKGTILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKK 75
Query: 113 PTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLN 172
+FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LN
Sbjct: 76 AKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLN 135
Query: 173 EIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQ 232
E+Q++ V+SVNPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++
Sbjct: 136 EVQVIATVVSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDE 195
Query: 233 LKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQK 292
LK+S LDL+VAGT A++ VESE+ L E+ +L A++FGHE+ ++ I IN LV G+
Sbjct: 196 LKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKP 255
Query: 293 KVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI 352
K +W ++ L +++ ++E ++ AY+I KQ R I D+ +L+ ++ T+
Sbjct: 256 KWDWQAEPVNEALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TL 314
Query: 353 DINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDT 412
D +I IL +E ++R ++L RID R + IR + +RTGILPRTHGS+LFTRG+T
Sbjct: 315 DAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGET 374
Query: 413 QALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAK 472
QALV ATLGT+RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAK
Sbjct: 375 QALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAK 434
Query: 473 RALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGL 532
R +L V+P+ ++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL
Sbjct: 435 RGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 494
Query: 533 IKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKK 592
+K+G+ V+LSDILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK
Sbjct: 495 VKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKG 554
Query: 593 GLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQID 652
+IL M+ + + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+
Sbjct: 555 ARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIE 614
Query: 653 INDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGL 712
I D+G I IA+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL
Sbjct: 615 IEDDGTIKIAATDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGL 674
Query: 713 LHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+HISQI+ KRV +TD+L+ Q V VKV+ +D +GRI+LS+
Sbjct: 675 VHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSI 715
>gi|226702687|sp|B8CKH8.1|PNP_SHEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|212555563|gb|ACJ28017.1| Polyribonucleotide nucleotidyltransferase [Shewanella piezotolerans
WP3]
Length = 701
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/689 (55%), Positives = 517/689 (75%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I+PDI S+IG S AL+IS LPF GPLGVA+VGY +G+Y+LNP QL S LDL+VAG
Sbjct: 121 PEINPDIISMIGTSAALAISGLPFNGPLGVARVGYTNGEYVLNPDVTQLVDSELDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ LPE+++L +++GHE+ ++ INAI+EL + +W V+D+
Sbjct: 181 TEGAVLMVESEAASLPEEVMLGGVVYGHEQQQVVINAISELKAEASKPAWDWTAPVQDQE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L++KI +++E + +AYQI+ KQ R T + K + EN D+ +I+ +L L
Sbjct: 241 LVAKIKDLAEAGLTEAYQIEVKQDR-YTQVGVIKSAAKEALLAENPEADLREIDGLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + +R +++ G+LPRTHGSSLFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRSRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QK+D++MGE+T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT DI+QIAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKDIMQIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S APR+ T+KI+P KIRDVIGKGG+TIR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G VY G V+R+ DFGA + IL GKDGL+HISQI+ +RV
Sbjct: 600 NGEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKV+ +D +GR++LSM
Sbjct: 660 NVSDYLEVGQEVKVKVMEVDRQGRVRLSM 688
>gi|220934183|ref|YP_002513082.1| polynucleotide phosphorylase/polyadenylase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|254782744|sp|B8GP06.1|PNP_THISH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219995493|gb|ACL72095.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 693
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 507/689 (73%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I KSF+YG + ++ E GEIARQA+ +VLV++ DTV+L T V KD +FFPLTV
Sbjct: 1 MTAIKKSFQYGQHTVTFETGEIARQASGAVLVNMADTVVLVTAVGLKDVAQGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ V+S+N
Sbjct: 61 NYQERTYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVMSMN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++DPD+ +++G S AL++S LPF GP+G A+VGY++G Y+LNP+ +LK S LDL+VAG
Sbjct: 121 PEVDPDVPAMLGASAALALSGLPFKGPIGAARVGYLNGAYVLNPSMSELKHSDLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TEKA++ VESE+K L E+++L A+++GHE+M+ AI INEL G+ +W ++
Sbjct: 181 TEKAVLMVESEAKLLSEEVMLGAVMYGHEQMQAAIKVINELAAEAGKPAWDWVAPEENVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L + E ++ AYQI KQ R+ + + + L E + L
Sbjct: 241 LKEAVAAACEAELTAAYQIAEKQARNQQVNALRDAVVAKLATGEEGAPSAEKVKGAFGAL 300
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +I+R ++L RID R +RPI+++TG+LPRTHGS+LFTRG+TQA+VVATLGT R
Sbjct: 301 EKRIVRSRVLKGEPRIDGRDTRTVRPITVKTGVLPRTHGSALFTRGETQAIVVATLGTDR 360
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q I+A+ GE + FMLHYN PPF TG+ G +G PKRREIGHGRLAKR + V+P +
Sbjct: 361 DAQLIEAIEGERRERFMLHYNFPPFCTGETGMVGSPKRREIGHGRLAKRGVQAVMPGEAE 420
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
Y +R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGLIK+G+ ++SD
Sbjct: 421 CPYVLRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDAFAVISD 480
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG+ +G++ALQMDIKI GIT +I++ AL +AK+G +ILEKM
Sbjct: 481 ILGDEDHLGDMDFKVAGSKDGVSALQMDIKIDGITREIMEKALAQAKEGRLHILEKMNAV 540
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + + E+S +APR T+KI P KIRDVIGKGG+TIR LTEETGT IDI+D+G + IAS
Sbjct: 541 LSEPRTEVSAYAPRFTTLKIHPDKIRDVIGKGGATIRALTEETGTSIDISDDGTVKIASV 600
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +G EA+RRIE+LT V++G++Y G V+++ DFGA + IL G+DGL+HISQIS +RV
Sbjct: 601 DKAAGDEARRRIEELTADVEVGRIYEGRVVKIMDFGAFVTILPGRDGLVHISQISEERVE 660
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E V+VKVL +D +GRI+LSM
Sbjct: 661 SVSDRLTEGDLVKVKVLEVDKQGRIRLSM 689
>gi|163752368|ref|ZP_02159563.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
KT99]
gi|161327740|gb|EDP98927.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
KT99]
Length = 702
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/689 (55%), Positives = 514/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + I++E G IARQA ++VL S+ DT +L TVV KD +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTITLETGVIARQADAAVLASMGDTTVLVTVVGKKDEEPGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I+PD+ S+IG S AL+IS LPF GPLGVA+VGYI+G+YILNP QL +S LDL+VAG
Sbjct: 121 PEINPDVISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLDLIVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ L E+++L ++ +GHE+ ++ I AI EL G+ +W V D+
Sbjct: 181 TEGAVLMVESEAASLAEEVMLGSVAYGHEQQQVVITAIKELKAEAGKPAWDWTAPVSDED 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L++KI ++E K AYQI +K R + D L+ EN +D+ ++ IL +
Sbjct: 241 LVAKIKALAEEKFSAAYQIADKSERRDAVNALKSDAIEKLV-AENADVDLREVGKILSSV 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +++R +IL RID R + +R +++ G+LPRTHGS++FTRG+TQALV TLGT R
Sbjct: 300 EKQVVRGRILAGKPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QK+D++MGE+T+ FMLHYN PP+ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKVDSIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMKAVMPSAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YSIR+VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSIRVVSEITESNGSSSMATVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S APR+ IKI+P KIRDVIGKGG+TIR LTEETGT I++ D+G + IAS
Sbjct: 540 IGTHRDDISAHAPRITIIKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
NS + +EA RRIE++T V++G +Y G V+R+ DFGA + IL GKDGL+HISQI+ +RV
Sbjct: 600 NSEATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKV+ +D +GR++LSM
Sbjct: 660 NVSDYLQTGQEVKVKVMEVDRQGRVRLSM 688
>gi|238787597|ref|ZP_04631395.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
ATCC 33641]
gi|238724384|gb|EEQ16026.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
ATCC 33641]
Length = 706
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 520/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ ++ I IN LV G+ K +W P V ++
Sbjct: 181 GTAAAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I KQ R I D+ +L+ ++ T+D +I IL
Sbjct: 241 ALHARVAELAEVRLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDAAEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP++ G+ G +G PKRREIGHGRLAKR ++ V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRIRLSI 689
>gi|146313236|ref|YP_001178310.1| polynucleotide phosphorylase [Enterobacter sp. 638]
gi|187610301|sp|A4WEX9.1|PNP_ENT38 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145320112|gb|ABP62259.1| Polyribonucleotide nucleotidyltransferase [Enterobacter sp. 638]
Length = 711
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/690 (54%), Positives = 523/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFINEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S LPF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGLPFNGPIGSARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I I +LV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIENIKDLVKEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ ++D N+++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQIDVIKSETIATLV-AEDESLDANELSEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E +R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMG+ TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNIDELMGDRTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|386829392|ref|ZP_10116499.1| polyribonucleotide nucleotidyltransferase [Beggiatoa alba B18LD]
gi|386430276|gb|EIJ44104.1| polyribonucleotide nucleotidyltransferase [Beggiatoa alba B18LD]
Length = 693
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/689 (55%), Positives = 517/689 (75%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
+ + K+F+YG + +++E GEIARQA+++V+ S+ DTV+L TVV K+P+ +FFPLTV
Sbjct: 1 MDPLKKTFQYGQHSVTLETGEIARQASAAVMSSMGDTVVLVTVVGSKEPSKEGDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAG+IP SFFKREG+PSE+ET+ SRLIDRP+RPLFPEG+ NE+QIV V+S++
Sbjct: 61 DYQERTYAAGKIPASFFKREGRPSEKETLTSRLIDRPLRPLFPEGFTNEVQIVATVMSLD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+IDPDI ++IG S AL+++ P L LG A+VGYI+G+Y+LNPT +QL+ S LDL+VAG
Sbjct: 121 PEIDPDIPALIGASAALALAGFPMLATLGAARVGYINGEYVLNPTGKQLQHSALDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ +L E+I+L A++FGHE++++ ++AI +V W P+ D
Sbjct: 181 TRTAVLMVESEATELSEEIMLGAVLFGHEQLQVVLDAIQSMVTEANPSPWVWKPVTLDPA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+ ++ N +E+++R+AYQI++K +R T + I K++ S L D E + + L L
Sbjct: 241 LVEQVKNSAENRLREAYQIRDKLVRRDTIEIIRKEVISQLCDVEAPQWSESQVKSALSKL 300
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E KI+R IL RID R IRPI+IRTG+LPRTHGS+LFTRG+TQA+VV TLGT R
Sbjct: 301 EEKIVRGNILGGLPRIDGRDNRTIRPITIRTGVLPRTHGSALFTRGETQAIVVTTLGTER 360
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q +DAL GE + FMLHYN PP+ G+IGRIG PKRREIGHGRLA+R + V+PN
Sbjct: 361 DAQVVDALEGERKEGFMLHYNFPPYCVGEIGRIGTPKRREIGHGRLARRGVQAVMPNQQT 420
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+RLVSEITESNGSSSMA+VCG LAL+DA VPI VAGIAMGLIK+G+ V+LSD
Sbjct: 421 FPYSVRLVSEITESNGSSSMATVCGASLALMDAAVPIKAPVAGIAMGLIKEGDNFVVLSD 480
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
I+GDED GDMDFKVAGT NG+TALQMDIKI GIT +I++IAL +AK G +IL M
Sbjct: 481 IMGDEDHLGDMDFKVAGTTNGVTALQMDIKIDGITREIMEIALAQAKTGRMHILGIMGQA 540
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S APR+ + +I KIRDVIGKGG+TIR++TEETG IDI+D+G++ IAS
Sbjct: 541 ISTPREEMSVHAPRITSFRIKTDKIRDVIGKGGATIRSITEETGAVIDISDDGLVKIASS 600
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + +EAKRRI ++T V++G +Y G + +L DFGA + I GKDGL+HISQIS +RV+
Sbjct: 601 DQAASEEAKRRILQITTDVEVGGIYDGKIAKLVDFGAFVTISPGKDGLVHISQISEERVD 660
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD L+E V+VKVL ID +G+I+LSM
Sbjct: 661 KVTDKLREGDTVKVKVLEIDKQGKIRLSM 689
>gi|108810762|ref|YP_646529.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
gi|108774410|gb|ABG16929.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
Nepal516]
Length = 731
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/701 (54%), Positives = 520/701 (74%), Gaps = 1/701 (0%)
Query: 53 RRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKD 112
R G KG L II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K
Sbjct: 16 RSGTAKHKGTILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKK 75
Query: 113 PTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLN 172
+FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LN
Sbjct: 76 AKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLN 135
Query: 173 EIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQ 232
E+Q++ V+SVNPQI+PDI ++IG S LS+S +PF GP+G A+VG+I+ +Y+LNPTT++
Sbjct: 136 EVQVIATVVSVNPQINPDIVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDE 195
Query: 233 LKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQK 292
LK+S LDL+VAGT A++ VESE+ L E+ +L A++FGHE+ ++ I IN LV G+
Sbjct: 196 LKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKP 255
Query: 293 KVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI 352
K +W ++ L +++ ++E ++ AY+I KQ R I D+ +L+ ++ T+
Sbjct: 256 KWDWQAEPVNEALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TL 314
Query: 353 DINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDT 412
D +I IL +E ++R ++L RID R + IR + +RTGILPRTHGS+LFTRG+T
Sbjct: 315 DAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGET 374
Query: 413 QALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAK 472
QALV ATLGT+RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAK
Sbjct: 375 QALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAK 434
Query: 473 RALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGL 532
R +L V+P+ ++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL
Sbjct: 435 RGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 494
Query: 533 IKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKK 592
+K+G+ V+LSDILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK
Sbjct: 495 VKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKG 554
Query: 593 GLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQID 652
+IL M+ + + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+
Sbjct: 555 ARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIE 614
Query: 653 INDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGL 712
I D+G I IA+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL
Sbjct: 615 IEDDGTIKIAATDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGL 674
Query: 713 LHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+HISQI+ KRV +TD+L+ Q V VKV+ +D +GRI+LS+
Sbjct: 675 VHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSI 715
>gi|440229154|ref|YP_007342947.1| polyribonucleotide nucleotidyltransferase [Serratia marcescens
FGI94]
gi|440050859|gb|AGB80762.1| polyribonucleotide nucleotidyltransferase [Serratia marcescens
FGI94]
Length = 706
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 518/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ I+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPTIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDHFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGY++ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYVNDQYVLNPTVDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE++ L ED +L A++FGHE+ ++ I+ IN LV VG+ K +W P ++
Sbjct: 181 GTAGAVLMVESEAEVLSEDQMLGAVVFGHEQQQVVIDNINSLVAEVGKPKWDWQPTPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ +++ ++ AYQI KQ R I +D+ ++L++ + T+D DI L D
Sbjct: 241 ALQARVAELAQSRLGDAYQITEKQDRYAQVDAIKEDVTAALLEQDE-TLDAADIQDALSD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L ++P
Sbjct: 360 RDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRGDISQFAPRIHTMKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|354599173|ref|ZP_09017190.1| Polyribonucleotide nucleotidyltransferase [Brenneria sp. EniD312]
gi|353677108|gb|EHD23141.1| Polyribonucleotide nucleotidyltransferase [Brenneria sp. EniD312]
Length = 706
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/689 (55%), Positives = 510/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I++ F+YG + +++E G +ARQAT++V+VSI+DT + TVV K FFPLTV
Sbjct: 1 MNPIVRKFQYGQHTVTLETGMMARQATAAVMVSIDDTAVFVTVVGAKQAKPGQGFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQ+ PDI ++IG S ALS+S +PF GP+G A+VGY++ +Y+LNPTT++LK+S LDL+VAG
Sbjct: 121 PQVSPDIVAMIGASAALSLSGIPFGGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ L E+ +L A++FGHE+ ++ I IN LV G+ K W + +
Sbjct: 181 TEGAVLMVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWEWHAPEVNAS 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L ++ +SE ++ AY+I KQ R I D+ ++L+ E+ T+D +I IL +
Sbjct: 241 LQQRVEALSEARLGDAYRITEKQERYAQVDAIKADVAAALL-AEDETLDAGEIQDILGSV 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT R
Sbjct: 300 EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P N+
Sbjct: 360 DAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGGNFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 KVTDYLQMGQEVPVKVLEVDRQGRVRLSI 688
>gi|421081058|ref|ZP_15541972.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
CFBP 3304]
gi|401704068|gb|EJS94277.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
CFBP 3304]
Length = 706
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 513/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ SRLIDRPIRPLFPEG+LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+GVA+VGY++ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I IN LV G+ K W +
Sbjct: 181 GTEGAVLMVESEAEVLSEDQMLGAVVFGHEQQQIVIQNINSLVAEAGKPKWEWHAPEVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L ++ +SE ++ AY+I KQ R I D+ ++L E+ T++ DI IL +
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVNVIKSDVVAAL-QAEDETLNAGDIQEILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 VEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RDAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEL 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|406939725|gb|EKD72689.1| hypothetical protein ACD_45C00613G0015 [uncultured bacterium]
Length = 697
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/688 (55%), Positives = 514/688 (74%), Gaps = 6/688 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
K+F+YG + +++E G IARQAT++VLV ++DT++L TVV + +FFPLTV+Y E+
Sbjct: 6 KTFRYGDHTVTLETGVIARQATAAVLVGMDDTMVLVTVVGQASTSEDRDFFPLTVNYQER 65
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YAAGRIPG +FKRE KPSE+ET+ SRLIDRP+RPLFP+G+ E+Q++ V+S+NP+ID
Sbjct: 66 TYAAGRIPGGYFKREAKPSEKETLTSRLIDRPVRPLFPKGFNFEVQVIATVVSMNPEIDS 125
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI +++G S AL++S +PF+GPLG A+VGY D YILNPT QL+ S LD++VAGTEKA+
Sbjct: 126 DIPAMLGASAALALSGMPFMGPLGAARVGYTDNAYILNPTLSQLETSELDMVVAGTEKAV 185
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
+ VESE+K+LPE +L A++F H+ M+ AI+AI ELV+ G+ +W+ + + + ++
Sbjct: 186 LMVESEAKELPEPAMLGAVMFAHQHMQTAISAIKELVKEAGKPAWDWEAPLVNPVVEKRV 245
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI----DNENLTIDINDINCILYDLE 365
+ E ++ KAYQI++KQ R I + + ++ D E+ + + D + +LE
Sbjct: 246 AELVEAELVKAYQIRDKQERQDAIAEIRERLLEKMLAENTDKEDEALLMEDTKYVFKNLE 305
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
S+I+R QIL+ RID R +RPIS++ G+LPRTHGS+LFTRG+TQALVVATLGT RD
Sbjct: 306 SRIVRGQILEGKPRIDGRDTKTVRPISVQVGVLPRTHGSALFTRGETQALVVATLGTERD 365
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDAL GE ++FMLHYN PPF+ G++G +G PKRREIGHG LAKR + VLP +F
Sbjct: 366 AQTIDALEGEHKETFMLHYNFPPFSVGEVGFVGSPKRREIGHGNLAKRGVKAVLPK--EF 423
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVPI HVAGIAMGL+K+G + +LSDI
Sbjct: 424 PYVLRVVSEITESNGSSSMATVCGSSLALMDAGVPIRAHVAGIAMGLVKEGNRFAVLSDI 483
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A +G +ILE M +
Sbjct: 484 LGDEDHLGDMDFKVAGTAQGVTALQMDIKIDGITEEIMRQALEQAHEGRIHILEIMNRAI 543
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + E+S +APR++ ++I KIRDVIGKGG TIR+LTEETGT +DI+D+G I +A+ +
Sbjct: 544 QQARAEMSVYAPRILNMRIPTDKIRDVIGKGGVTIRSLTEETGTIVDISDDGEIRVAAAD 603
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA RRIE+LT V +G+VY G V++L DFGA + IL GK GL+HISQI+ +RV
Sbjct: 604 LAACEEAIRRIERLTADVAVGEVYEGTVVKLADFGAFVSILPGKQGLVHISQIAKERVEK 663
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD L E Q VRVKVL ID +GRI+LSM
Sbjct: 664 VTDKLAEGQVVRVKVLEIDKQGRIRLSM 691
>gi|354725366|ref|ZP_09039581.1| polynucleotide phosphorylase/polyadenylase [Enterobacter mori LMG
25706]
Length = 710
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/690 (54%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT E+LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ +I I IN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++ ++ AY+I +KQ R I + ++L+ E+ ++D N+++ IL+
Sbjct: 241 ALNARVAALAGARLSDAYRITDKQERYAQVDVIKSETIATLL-AEDESLDANELSEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E +R ++L RID R + IR + +RTG+LPRTHGS+LF RG+TQALV ATLGT+
Sbjct: 300 IEKNAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFARGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|385870317|gb|AFI88837.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium sp.
SCC3193]
Length = 706
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 515/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGY++ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L ED +L A++FGH++ +I I IN LV G+ K W +
Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L ++ +SE ++ AY+I KQ R I D+ ++L E+ T++ +I IL +
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVNVIKADVVAAL-QAEDETLNAGEIQEILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase [Pectobacterium atrosepticum SCRI1043]
gi|81646171|sp|Q6D9A1.1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
atrosepticum SCRI1043]
Length = 706
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 513/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ SRLIDRPIRPLFPEG+LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+GVA+VGY++ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFSGPIGVARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L ED +L A++FGHE+ +I I IN LV G+ K W +
Sbjct: 181 GTQGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWEWHAPAVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L ++ +SE ++ AY+I KQ R I D+ ++L E+ T++ +I IL +
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVNVIKTDVVAAL-QAEDETLNAGEIQEILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 IEKNVVRGRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RDAQNIDELTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVRIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|406942173|gb|EKD74471.1| hypothetical protein ACD_44C00432G0005 [uncultured bacterium]
Length = 698
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/688 (55%), Positives = 519/688 (75%), Gaps = 7/688 (1%)
Query: 71 SFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKA 130
SF+YG++ ++ E GEIA+QAT++V V ++DTV+L TVV T +FFPLTV Y E++
Sbjct: 7 SFQYGAHTVTFETGEIAKQATAAVTVKMDDTVVLVTVVVSAK-VGTQDFFPLTVVYQERS 65
Query: 131 YAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPD 190
YAAGRIPG +FKREG+P+E+ET+ SRLIDRP+RPLFPEG+ NE+QI+ VLS + +DPD
Sbjct: 66 YAAGRIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPEGFNNEVQIIATVLSADKNVDPD 125
Query: 191 IASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAII 250
+ +++G S AL +S +PF GP+G A++GYIDG Y+LNP++ QL++S LDL+VAGT+KA++
Sbjct: 126 VPAMLGASCALYLSGIPFGGPIGAARIGYIDGAYVLNPSSTQLQQSALDLVVAGTDKAVL 185
Query: 251 TVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKII 310
VES++K+L E+++L A++ GHEKM+ AI+AI +L + G+ W+ + D+ L +K+
Sbjct: 186 MVESQAKELSEEVMLGAVLLGHEKMQTAIDAIKKLAETAGRGTWLWEALAHDEALKTKVS 245
Query: 311 NISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI-----DINDINCILYDLE 365
+ E + A+QI+ K R + + +L+D NL + + I I+ DLE
Sbjct: 246 ELIEKPLHDAFQIQEKASRGEKLGELKERAVKALVDT-NLDMAEQAKQVETIKKIVSDLE 304
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+++R+++L R+D R +RPI+IRT +LPRTHGS+LFTRG+TQALVV TLGT RD
Sbjct: 305 YQVLRERVLQGLPRVDGRDTKTVRPITIRTNVLPRTHGSALFTRGETQALVVVTLGTGRD 364
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDAL GE DSFM HYN PP++ G+IG++G PKRREIGHGRLAKRA+L +LP+ F
Sbjct: 365 AQMIDALEGEMKDSFMFHYNFPPYSVGEIGQVGSPKRREIGHGRLAKRAILALLPSQEAF 424
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
+Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GEK V+LSDI
Sbjct: 425 SYVMRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAAVAGIAMGLVKEGEKFVVLSDI 484
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G+TALQMDIKI GIT +I+++AL +AK+G +IL M +
Sbjct: 485 LGDEDHLGDMDFKVAGTSAGVTALQMDIKINGITAEIMKLALAQAKEGRLHILNIMNQAL 544
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
P + +S FAPR+ITIKI+P KIRDVIGKGGS IR LTEETG I++ D+GI+ IAS +
Sbjct: 545 PAPRENMSDFAPRIITIKINPEKIRDVIGKGGSVIRALTEETGATIEVTDDGIVKIASVD 604
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+G+EA RRI+++T V++GK+Y G V ++ +FGA I +L GKDGLLHISQI+ +RV
Sbjct: 605 REAGEEACRRIKQITAEVEVGKIYEGTVTKIVEFGAFINLLPGKDGLLHISQITQQRVAN 664
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D L E Q VRVKVL +D +G++KLSM
Sbjct: 665 VNDVLSEGQVVRVKVLDVDRQGKVKLSM 692
>gi|430762367|ref|YP_007218224.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430011991|gb|AGA34743.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 694
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/684 (54%), Positives = 512/684 (74%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
K+F+YG+ ++ E G IARQA+ +VLV+I DTV+L TVV+ K+ +FFPLTV+Y E+
Sbjct: 5 KTFQYGNQTVTFETGGIARQASGAVLVNIADTVVLVTVVARKEADPGRDFFPLTVNYQER 64
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YAAG+IPG FFKREG+P+E+ET+ SRLIDRP+RPLFPEG+ +E QI+ V+S+NP++DP
Sbjct: 65 TYAAGKIPGGFFKREGRPNEKETLTSRLIDRPLRPLFPEGFKHETQIIATVMSINPEVDP 124
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI +++G S AL++S +PF GP+G A+VGY DG+Y+LNPT +L S LDL+VAGTE A+
Sbjct: 125 DIVAMLGASAALAVSGVPFAGPIGAARVGYRDGQYLLNPTASELPDSQLDLVVAGTENAV 184
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
I VESE+ +L E+++L A+++GHE+M+ AI AI EL + G+ +W D +L ++
Sbjct: 185 IMVESEASELSEEVMLGAVMYGHEQMQAAIQAIRELAADAGKPAWDWTAPETDDSLDVRV 244
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKII 369
++ + + + YQ+ KQ R ++ + + + + +DLE +I+
Sbjct: 245 AEVARNALVEVYQVAEKQARTERLNSLRAGVVEQVATGGDEAPSAEAVKNAFHDLEYRIV 304
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R +ILD RID R +RPI+++TG+LPR HGS++FTRG+TQALVVATLGT RD Q I
Sbjct: 305 RDRILDGNPRIDGRDTRTVRPITVQTGVLPRAHGSAVFTRGETQALVVATLGTDRDAQVI 364
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DA+ GE + FMLHYN PP+ TG+ G +G PKRREIGHGRLAKR + V+P ++ F Y I
Sbjct: 365 DAIEGERRERFMLHYNFPPYCTGETGMVGTPKRREIGHGRLAKRGVQAVMPKDDSFPYVI 424
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGLIK+ ++ +L+DILGDE
Sbjct: 425 RVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLIKEADRFAVLADILGDE 484
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT +G+TALQMDIKI GIT +I++ AL +A+ G +ILE+M + +
Sbjct: 485 DHLGDMDFKVAGTRDGVTALQMDIKIDGITREIMETALQQARDGRLHILERMGEAISSHR 544
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
E+S +APR IT++I+P KIRDVIGKGG+TIR LTEETGT IDI+D+GI+ IAS + +G
Sbjct: 545 TEMSSYAPRFITMRINPEKIRDVIGKGGATIRALTEETGTSIDISDDGIVKIASTDQAAG 604
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+EA+RRIE+LT V++G+VY+G V+++ DFGA + IL G+DGL+HISQIS+ RV +TDF
Sbjct: 605 EEARRRIEELTADVEVGRVYSGRVVKIMDFGAFVSILPGRDGLVHISQISNDRVENVTDF 664
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
L E V VKVL +D +GRI+LSM
Sbjct: 665 LNEGDSVTVKVLEVDKQGRIRLSM 688
>gi|238755159|ref|ZP_04616505.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
gi|238706606|gb|EEP98977.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
Length = 706
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFPEG+LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ ++ I IN LV G+ K +W P V ++
Sbjct: 181 GTAAAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++ ++ AY+I KQ R I ++ +L+ + T+D ++I IL
Sbjct: 241 VLYARVKELASARLGDAYRITEKQERYTQVDAIKANVIEALLAQDE-TLDTSEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+KD E V+LS
Sbjct: 420 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALSQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+ KI+DVIGKGGS IR LTEETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRIRLSI 689
>gi|336310484|ref|ZP_08565456.1| polyribonucleotide nucleotidyltransferase [Shewanella sp. HN-41]
gi|335866214|gb|EGM71205.1| polyribonucleotide nucleotidyltransferase [Shewanella sp. HN-41]
Length = 699
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/689 (55%), Positives = 520/689 (75%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYI+G+Y+LNPT Q++ S L+L+VAG
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVAQIETSQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ LPE+++L ++++GHE+ ++ I AI E G+ NW V+D+T
Sbjct: 181 TESAVLMVESEAQALPEEVMLGSVVYGHEQQQVVIKAIAEFKAEAGKPMWNWTAPVQDET 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+++I ++E + AY+I+ KQ R + + +L+ + N +D+ +++ +L L
Sbjct: 241 LVAQIKELAEAGLGDAYKIQVKQERYAQVSVVKAAVKEALLAS-NPDVDLREVDNLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + IR +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRNGITALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVTVKVMEVDRQGRVRLSI 688
>gi|422007196|ref|ZP_16354182.1| polynucleotide phosphorylase/polyadenylase [Providencia rettgeri
Dmel1]
gi|414097086|gb|EKT58741.1| polynucleotide phosphorylase/polyadenylase [Providencia rettgeri
Dmel1]
Length = 707
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 519/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +SIE G IARQA+++V+V+++DT + T V+ K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVSIETGMIARQASAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG+ NEIQI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFYNEIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S L++S +PF GP+G A+VG+I+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGVPFNGPIGAARVGFINDQYVLNPTADELKNSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L E+ +L A++FGH++ ++ I INELV+ G++K +W P ++
Sbjct: 181 GTDNAVLMVESEADLLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ AY+I KQ R I +++ + L+ E+ +D++++ IL
Sbjct: 241 ALHDRVAQLAESRMGDAYRITEKQERYAQVDLIKEEVTAVLV-AEDENVDVSEVADILAS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R +++ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKQVVRSRVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE+TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P++
Sbjct: 360 RDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDHA 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LS
Sbjct: 420 DFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGNDFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TIKI+ KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINGPREEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE +T V++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEDITAEVEVGRIYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 660 EKVTDYLQMGQEVPVKVLEIDRQGRIRLSM 689
>gi|387887760|ref|YP_006318058.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae DSM
4481]
gi|414594222|ref|ZP_11443861.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae NBRC
105725]
gi|386922593|gb|AFJ45547.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae DSM
4481]
gi|403194812|dbj|GAB81513.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae NBRC
105725]
Length = 710
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/690 (53%), Positives = 521/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQA+++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQASAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L ED +L A++FGH++ ++ I I LV G+ + +W P ++
Sbjct: 181 GTDSAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALVNEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I ++ ++L E+ T+D N++ IL+
Sbjct: 241 ALNARVGALAESRLSDAYRITDKQERYAQVDLIKSEVIATL-KAEDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQTLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKNAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L Q+V VKVL +D +GR++LSM
Sbjct: 660 EKVTDYLHMGQEVPVKVLEVDRQGRVRLSM 689
>gi|261820132|ref|YP_003258238.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium wasabiae
WPP163]
gi|261604145|gb|ACX86631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
WPP163]
Length = 706
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 515/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGY++ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L ED +L A++FGH++ +I I IN LV G+ K W +
Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKWEWHAPEVNI 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L ++ +SE ++ AY+I KQ R I D+ ++L E+ T++ +I IL +
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVNVIKADVVAAL-QAEDETLNAGEIQEILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|242240745|ref|YP_002988926.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii
Ech703]
gi|242132802|gb|ACS87104.1| Polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech703]
Length = 722
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/703 (54%), Positives = 517/703 (73%), Gaps = 1/703 (0%)
Query: 51 HSRRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSC 110
R G+ ++K L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV
Sbjct: 4 EERHGVPLVKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGA 63
Query: 111 KDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGY 170
K +FFPLTV+Y E+ YAAGRIPG FF+REG+PSE ET+ISRLIDRPIRPLFP+G+
Sbjct: 64 KHVKPGQDFFPLTVNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGF 123
Query: 171 LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTT 230
NE+Q++ V+SVNPQI PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT
Sbjct: 124 FNEVQVIATVVSVNPQISPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQ 183
Query: 231 EQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG 290
++LK+S LDL+VAGTE A++ VESE+ L ED +L A++FGHE+ ++ I I LV G
Sbjct: 184 DELKQSRLDLVVAGTEGAVLMVESEADLLTEDQMLGAVVFGHEQQQVVIENIKSLVAEAG 243
Query: 291 QKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENL 350
+ K +W P + L +++ +SE ++ AY+I KQ R I D+ + L+ E+
Sbjct: 244 KSKWDWQPPEVNVELQNRVKVLSEARLGDAYRITEKQERYAQVDAIKSDVVTGLL-AEDD 302
Query: 351 TIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRG 410
T+D N+I IL +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG
Sbjct: 303 TLDDNEIRDILGSIEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRG 362
Query: 411 DTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRL 470
+TQALV ATLGT RD Q ID LMGE TD F+LHYN PP++ G+ G +G PKRREIGHGRL
Sbjct: 363 ETQALVTATLGTERDAQIIDELMGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRL 422
Query: 471 AKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAM 530
AKR +L V+P F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAM
Sbjct: 423 AKRGVLAVMPKPEAFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 482
Query: 531 GLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKA 590
GL+K+G+ V+LSDILGDED GDMDFKVAG+ G+TALQMDIKI GIT +I+Q+AL +A
Sbjct: 483 GLVKEGDSYVVLSDILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQA 542
Query: 591 KKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQ 650
K +IL M+ + + E+S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT
Sbjct: 543 KGARLHILGVMEQAISTPRGEISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTT 602
Query: 651 IDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKD 710
I+I D+G + IAS + +EA RRIE++T +++G++Y G V R+ DFGA + I GK+
Sbjct: 603 IEIEDDGTVKIASSDGDKAREAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKE 662
Query: 711 GLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
GL+HISQI+ KR+ + D+L+ Q+V VKVL +D +GR++LS+
Sbjct: 663 GLVHISQIADKRIEKVADYLQLGQEVPVKVLEVDRQGRVRLSI 705
>gi|253686990|ref|YP_003016180.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|259534139|sp|C6DKK7.1|PNP_PECCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|251753568|gb|ACT11644.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 706
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 516/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGY++ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ L ED +L A++FGH++ ++ I IN LV G+ K +W +
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWHAPEVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L ++ +SE ++ AY+I KQ R I D+ ++L+ E+ T++ +I IL +
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVEAALL-AEDETLNAGEIQEILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 VEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|403057056|ref|YP_006645273.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402804382|gb|AFR02020.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 706
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 512/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+G A+VGY++ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTMDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ L ED +L A++FGHE+ +I I IN LV G+ K W +
Sbjct: 181 GTEGAVLMVESEADILSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWEWHAPEVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L ++ +SE ++ AY+I KQ R I D+ ++L E+ T++ DI IL +
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAAL-QAEDETLNAGDIQEILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 VEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RDAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|227327831|ref|ZP_03831855.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 706
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 513/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ SRLIDRPIRPLFPEG+LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+GVA+VGY++ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I IN LV G+ K +W +
Sbjct: 181 GTEGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWDWHAPEVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L ++ +SE ++ AY+I KQ R I D+ ++L E+ T++ DI IL +
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAAL-QAEDETLNAGDIQEILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 VEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RDAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|119774103|ref|YP_926843.1| polynucleotide phosphorylase/polyadenylase [Shewanella amazonensis
SB2B]
gi|187611289|sp|A1S467.1|PNP_SHEAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119766603|gb|ABL99173.1| Polyribonucleotide nucleotidyltransferase [Shewanella amazonensis
SB2B]
Length = 699
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/689 (54%), Positives = 514/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA +V+ S+ DT +L TVV K+ +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+ + NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGY++G+Y+LNP +L S LDL+VAG
Sbjct: 121 PQIEPDIVSMIGTSAALAISGIPFNGPLGAARVGYVNGEYVLNPGAAELAGSELDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+K LPE+++L A+++GH++ ++ INAINE G+ + NW VK++
Sbjct: 181 TQSAVLMVESEAKSLPEEVMLGAVVYGHDQQQVVINAINEFAAEAGKPRWNWTAPVKNEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+++I ++E + AYQI KQ R + K + L N +++ + +L L
Sbjct: 241 LVAQIKELAEEGLTAAYQIMAKQERYEAVGEVKKATIAKL-QEANPDVNVREAADLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + IR +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKNVVRGRIIAGMPRIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S FAPR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSARPDISDFAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASN 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++YTG V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGDATREAIRRIEEITSEVEVGRLYTGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLQLNQEVTVKVMEVDRQGRVRLSI 688
>gi|422015365|ref|ZP_16361964.1| polynucleotide phosphorylase/polyadenylase [Providencia
burhodogranariea DSM 19968]
gi|414099530|gb|EKT61171.1| polynucleotide phosphorylase/polyadenylase [Providencia
burhodogranariea DSM 19968]
Length = 707
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 525/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +SIE G +ARQAT++V+V+++DT + T V+ K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVSIETGMMARQATAAVMVNMDDTAVFVTAVAKKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+++RLIDRP+RPLFPE +LNEIQI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLVARLIDRPLRPLFPESFLNEIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VG+ID +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGVPFNGPIGAARVGFIDDQYVLNPTADELKSSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L E+ +L A++FGH++ ++ I INELV+ G++K +W P ++
Sbjct: 181 GTESAVLMVESEAELLSEEQMLGAVVFGHDQQQVVIKEINELVKEAGKEKWDWQPEPVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L K+ +++ ++ AY+I +KQ R ++ KD ++ I E+ +D ++I+ +L
Sbjct: 241 ALSDKVAELAQSRMGDAYRITDKQERYAQV-DLIKDEVTAAIVAEDENVDTSEISDLLAS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R +++ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKQVVRTRVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE+TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+PN+
Sbjct: 360 RDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNHA 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGNDFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITSEIMQVALNQAKGARLHILGTMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINGPREEISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE++T V++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEEITAEVEVGRVYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 660 EKVTDYLQMGQEVPVKVLEIDRQGRIRLSM 689
>gi|344943494|ref|ZP_08782781.1| Polyribonucleotide nucleotidyltransferase [Methylobacter
tundripaludum SV96]
gi|344260781|gb|EGW21053.1| Polyribonucleotide nucleotidyltransferase [Methylobacter
tundripaludum SV96]
Length = 692
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/689 (56%), Positives = 513/689 (74%), Gaps = 3/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K F+YG + +E GEIARQA +V++ ++ T +L TVV K S +FFPLTV
Sbjct: 1 MNPIRKEFQYGDRLVKLETGEIARQADGAVMIDVDGTTLLVTVVGKKQ-ASGGDFFPLTV 59
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EKAYAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGY NE+QI+ V+S+N
Sbjct: 60 NYQEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYTNEVQIIATVVSLN 119
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++DP+I +++G S AL++S LPF GP+G A VGY DG+YILNPT LK+S L+L+VAG
Sbjct: 120 PEVDPEIPALLGASAALAVSGLPFNGPVGAATVGYKDGEYILNPTPAALKESQLELVVAG 179
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ L E+++L A++FGH++M++AINAINE G V W +
Sbjct: 180 TAHAVLMVESEADNLSEEVMLGAVLFGHQQMQVAINAINEFAAAAGAGVVEWVAPEVNAE 239
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L + E I+ AYQ+ K +R K I + L+ N +DI I+ L
Sbjct: 240 LKKLVTAEVEAGIKAAYQVAEKLVRQEQLKEIRNAVVEKLVANGEYAE--SDIRGIIEHL 297
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E I+R IL++G RID R ++ IRPI++RTG+LPRTHGS+LFTRG+TQALVVATLGT R
Sbjct: 298 EYSIVRNAILNEGKRIDGRELDKIRPITVRTGVLPRTHGSALFTRGETQALVVATLGTQR 357
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDAL GE+ + FMLHYN PP++ G+ G +G PKRREIGHGRLAKR + VLPN +
Sbjct: 358 DAQIIDALAGEYKEPFMLHYNFPPYSVGETGFVGSPKRREIGHGRLAKRGVAAVLPNMEE 417
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y+IR+VSE+TESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+G+ +LSD
Sbjct: 418 FPYTIRVVSEVTESNGSSSMASVCGSSLALMDAGVPIKSPVAGIAMGLIKEGDSFAVLSD 477
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
I+GDED GDMDFKVAG+V+GITALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 478 IMGDEDHLGDMDFKVAGSVDGITALQMDIKIDGITAEIMKSALDQAKHGRLHILGEMNKA 537
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S FAPR+IT KIDPSKIR+VIGKGG+TIR++TE+TG +D+ D+G++ +AS
Sbjct: 538 LSTTREEMSDFAPRIITFKIDPSKIREVIGKGGATIRSITEQTGASVDLTDDGVVKVASV 597
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +G+EA+R IE++T V++GKVY G V+RL DFGA + IL GKDGL+HISQIS +RV+
Sbjct: 598 DKAAGEEARRMIEEITAEVEVGKVYEGKVVRLMDFGAFVTILPGKDGLVHISQISDERVD 657
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E V+VKVL ID +GR++LSM
Sbjct: 658 KVSDRLNEGDVVKVKVLEIDRQGRVRLSM 686
>gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061]
gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus nematophila ATCC 19061]
Length = 712
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/694 (54%), Positives = 521/694 (75%), Gaps = 5/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + ++IE G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+P E ET+++RLIDRP+RPLFPEG+LNE+QI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT+++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ +I I IN L G++K +W P ++
Sbjct: 181 GTESAVLMVESEAELLTEDQMLGAVVFGHEQQQIVIENINSLAAEAGKEKWDWAPEPINQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN----LTIDINDINC 359
+L ++ ++E ++ AY+I KQ R NI K+ S +I E+ + ++ ++
Sbjct: 241 SLHDRVAELAESRLGDAYRITEKQERYAQV-NIIKEEVSVVILAESAEKGVELEEGEVLD 299
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
L LE ++R ++L RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV AT
Sbjct: 300 ALSGLEKNVVRGRVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAAT 359
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RD Q ID LMGE TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+
Sbjct: 360 LGTERDAQVIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 419
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
PN ++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+
Sbjct: 420 PNASEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF 479
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
V+LSDILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+QIAL +AK +IL
Sbjct: 480 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQIALNQAKGARLHILS 539
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M+ + +N++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G +
Sbjct: 540 VMEQAIESPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 599
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + + A RIE++T V++G++YTG V R+ DFGA + I GK+GL+HISQI+
Sbjct: 600 KIAATDGDKARHAISRIEEITAEVEVGRIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 659
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
KRV +TD+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 660 DKRVEKVTDYLQVGQEVPVKVLEIDRQGRIRLSM 693
>gi|429118791|ref|ZP_19179538.1| Polyribonucleotide nucleotidyltransferase [Cronobacter sakazakii
680]
gi|426326696|emb|CCK10275.1| Polyribonucleotide nucleotidyltransferase [Cronobacter sakazakii
680]
Length = 711
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/692 (53%), Positives = 515/692 (74%), Gaps = 2/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
++Y E+ YAAGRIPG FF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I IN+LV+ G+ + +W P ++
Sbjct: 181 GTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCIL 361
L +++ ++E ++ AY+I +KQ R I D+ ++L E +D N++ IL
Sbjct: 241 ALNARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAEQAEGDALDENELGDIL 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 301 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID LMGE TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 361 TERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPA 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+
Sbjct: 421 ADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAG+ GITALQMDIKI I+Q+AL +AK +IL M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEASPKRIMQVALNQAKGARLHILGVM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + I
Sbjct: 541 EQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ K
Sbjct: 601 AATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 661 RVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 692
>gi|227112579|ref|ZP_03826235.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 706
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 512/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ SRLIDRPIRPLFPEG+LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+GVA+VGY++ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ L ED +L A++FGHE+ +I I IN LV G+ K W +
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKWEWHAPEVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L ++ +SE ++ AY+I KQ R I D+ ++L E+ T++ DI IL +
Sbjct: 241 SLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAAL-QAEDETLNAGDIQEILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 VEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RDAQNIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|51594836|ref|YP_069027.1| polynucleotide phosphorylase [Yersinia pseudotuberculosis IP 32953]
gi|186893845|ref|YP_001870957.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis PB1/+]
gi|81640532|sp|Q66F56.1|PNP_YERPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704836|sp|B2K2Q9.1|PNP_YERPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|51588118|emb|CAH19724.1| polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis IP 32953]
gi|186696871|gb|ACC87500.1| 3' exoribonuclease [Yersinia pseudotuberculosis PB1/+]
Length = 704
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L E+ +L A++FGHE+ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I KQ R I D+ +L+ ++ T+D +I IL
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDAAEIQDILAS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTGILPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSAS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQDVPVKVMEVDRQGRIRLSI 689
>gi|293393150|ref|ZP_06637465.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
4582]
gi|291424296|gb|EFE97510.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
4582]
Length = 706
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 516/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ I+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPTIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ L ED +L A++FGHE+ ++ I IN LV VG+ K +W ++
Sbjct: 181 GTEGAVLMVESEADVLSEDQMLGAVVFGHEQQQVVIENINSLVAEVGKPKWDWQAPAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
TL +++ ++E ++ AY I KQ R I +D+ ++L+ + ++D +I IL
Sbjct: 241 TLHARVAELAEGRLGDAYHITEKQQRYAQVDAIKEDVIAALLAQDE-SLDAGEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L ++P
Sbjct: 360 RDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VY G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|380513486|ref|ZP_09856893.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas sacchari
NCPPB 4393]
Length = 702
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/690 (55%), Positives = 506/690 (73%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVSDLKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ INAINEL G K W K++ +I
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSEWVAPSKNEAMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN---ENLTIDINDINCILYD 363
+ + ++ A+Q+++K R I KD+ + L EN D+ +
Sbjct: 243 AALKEAVGEQLAAAFQVRDKLQRRDAIAAIKKDVLAQLAPRATAENWVA--ADLAKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R +L +RID R ++ +RPIS++ G+LPRTHGS+LFTRG+TQA+VV TLGT+
Sbjct: 301 LEYQTMRGSVLSTKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P
Sbjct: 361 RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTME 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G V+LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMSK 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 ALTTPRAELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 601 VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE V+VKVL +D +GRI+LSM
Sbjct: 661 EKVGDKLKEGDVVKVKVLEVDKQGRIRLSM 690
>gi|271499178|ref|YP_003332203.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
gi|270342733|gb|ACZ75498.1| polyribonucleotide nucleotidyltransferase [Dickeya dadantii Ech586]
Length = 706
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 511/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPG FF+REG+PSE ET+ISRLIDRPIRPLFP+G++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTTE+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ L ED +L A++FGH++ +I I I L G+ K NW +
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPDVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ +SE ++ AY+I KQ R I D+ ++L+ E+ T+D N++ IL
Sbjct: 241 ELHNRVQALSEARLGDAYRITEKQERYAQVDTIKADVVTALL-AEDETLDENELRDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 IEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|294142055|ref|YP_003558033.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
DSS12]
gi|293328524|dbj|BAJ03255.1| polyribonucleotide nucleotidyltransferase [Shewanella violacea
DSS12]
Length = 705
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/688 (54%), Positives = 514/688 (74%), Gaps = 1/688 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K +FFPLTV+
Sbjct: 5 NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKYEEPGRDFFPLTVN 64
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+P
Sbjct: 65 YQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT 245
+I+PD+ S+IG S AL+IS LPF GPLGVA+VGYI+G+YILNP QL +S LDL+VAGT
Sbjct: 125 EINPDVISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLVESDLDLIVAGT 184
Query: 246 EKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTL 305
+ A++ VESE+ LPE+I+L ++ +GHE++++ I+A+ EL G+ +W V D L
Sbjct: 185 QAAVLMVESEAASLPEEIMLGSVAYGHEQLQVVIDAVTELKAEAGKPAWDWSAPVADADL 244
Query: 306 ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLE 365
+ KI ++E AYQI K R + + L++ EN ID++++ +L LE
Sbjct: 245 VEKIRVLAEADFAAAYQITTKHERRDAVNALKSVAIAKLVE-ENADIDLSEVGKLLASLE 303
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
K++R +I+ RID R + +R +++ G+LPRTHGS++FTRG+TQALV TLGT RD
Sbjct: 304 KKVVRGRIIAGQPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERD 363
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
QK+D++MGE+T+ FMLHYN PP+ G+ G +G PKRREIGHG+LA R + V+P+ F
Sbjct: 364 AQKVDSIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMNAVMPSAEDF 423
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
YSIR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDI
Sbjct: 424 PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 483
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +A +IL M +
Sbjct: 484 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAI 543
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
++++S APR+ TIKI+P KIRDVIGKGG+TIR LTEETGT I+++D+G + IAS N
Sbjct: 544 GTHRDDISAHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSN 603
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA RRIE++T V++G +Y G V+R+ DFGA + IL GKDGL+HISQI+ +RV
Sbjct: 604 GEATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 663
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKV+ +D +GR++LSM
Sbjct: 664 VSDYLQTGQEVKVKVMEVDRQGRVRLSM 691
>gi|417683926|ref|ZP_12333268.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74]
gi|332090702|gb|EGI95796.1| polyribonucleotide nucleotidyltransferase [Shigella boydii 3594-74]
Length = 696
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/675 (55%), Positives = 519/675 (76%), Gaps = 1/675 (0%)
Query: 79 ISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPG 138
+++E G +ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAGRIPG
Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60
Query: 139 SFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVS 198
SFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S
Sbjct: 61 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120
Query: 199 TALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQ 258
ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VAGTE A++ VESE++
Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180
Query: 259 LPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIR 318
L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++ L +++ ++E ++
Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 240
Query: 319 KAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGL 378
AY+I +KQ R I + ++L+ E+ T+D N++ IL+ +E ++R ++L
Sbjct: 241 DAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHAIEKNVVRSRVLAGEP 299
Query: 379 RIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438
RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+RD Q +D LMGE TD
Sbjct: 300 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 359
Query: 439 SFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITES 498
+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR++L V+P+ +KF Y++R+VSEITES
Sbjct: 360 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRSVLAVMPDMDKFPYTVRVVSEITES 419
Query: 499 NGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFK 558
NGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFK
Sbjct: 420 NGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 479
Query: 559 VAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPR 618
VAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR
Sbjct: 480 VAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPR 539
Query: 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEK 678
+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE+
Sbjct: 540 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 599
Query: 679 LTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRV 738
+T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V V
Sbjct: 600 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 659
Query: 739 KVLGIDDRGRIKLSM 753
KVL +D +GRI+LS+
Sbjct: 660 KVLEVDRQGRIRLSI 674
>gi|145600553|ref|YP_001164629.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides F]
gi|153948233|ref|YP_001402546.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis IP 31758]
gi|153997470|ref|ZP_02022570.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
CA88-4125]
gi|162418341|ref|YP_001608292.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Angola]
gi|165925875|ref|ZP_02221707.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936694|ref|ZP_02225261.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010063|ref|ZP_02230961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214313|ref|ZP_02240348.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167420765|ref|ZP_02312518.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423666|ref|ZP_02315419.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170025941|ref|YP_001722446.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis YPIII]
gi|218930504|ref|YP_002348379.1| polynucleotide phosphorylase [Yersinia pestis CO92]
gi|229839142|ref|ZP_04459301.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229896631|ref|ZP_04511798.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides A]
gi|229899706|ref|ZP_04514847.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. India 195]
gi|270489142|ref|ZP_06206216.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294505190|ref|YP_003569252.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
gi|384127519|ref|YP_005510133.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
gi|384138659|ref|YP_005521361.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis A1122]
gi|384416192|ref|YP_005625554.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|420559576|ref|ZP_15056058.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-03]
gi|420570002|ref|ZP_15065476.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-05]
gi|420628976|ref|ZP_15118487.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-16]
gi|420639412|ref|ZP_15127860.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-25]
gi|420715401|ref|ZP_15195392.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-56]
gi|420736882|ref|ZP_15214395.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-61]
gi|420742369|ref|ZP_15219324.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-63]
gi|420753503|ref|ZP_15228993.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-65]
gi|420780495|ref|ZP_15252516.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-88]
gi|420796718|ref|ZP_15266963.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-91]
gi|420801821|ref|ZP_15271544.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-92]
gi|420812538|ref|ZP_15281205.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-94]
gi|420834031|ref|ZP_15300572.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-99]
gi|421765000|ref|ZP_16201787.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis INS]
gi|123149978|sp|Q0WBF9.1|PNP_YERPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611335|sp|A4TQU4.1|PNP_YERPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611342|sp|A7FMR8.1|PNP_YERP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611439|sp|Q1C3L8.2|PNP_YERPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704837|sp|A9R5A9.1|PNP_YERPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704838|sp|B1JLX6.1|PNP_YERPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115349115|emb|CAL22078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CO92]
gi|145212249|gb|ABP41656.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
Pestoides F]
gi|149289107|gb|EDM39187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
CA88-4125]
gi|152959728|gb|ABS47189.1| polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis IP 31758]
gi|162351156|gb|ABX85104.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Angola]
gi|165915343|gb|EDR33953.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922487|gb|EDR39664.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990970|gb|EDR43271.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204545|gb|EDR49025.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961571|gb|EDR57592.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167057836|gb|EDR67582.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752475|gb|ACA69993.1| Polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis YPIII]
gi|229687198|gb|EEO79273.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695508|gb|EEO85555.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700409|gb|EEO88441.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides A]
gi|262367183|gb|ACY63740.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
gi|270337646|gb|EFA48423.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294355649|gb|ADE65990.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
gi|320016696|gb|ADW00268.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|342853788|gb|AEL72341.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis A1122]
gi|391422727|gb|EIQ85279.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-03]
gi|391438598|gb|EIQ99331.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-05]
gi|391502538|gb|EIR56825.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-16]
gi|391507393|gb|EIR61225.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-25]
gi|391582429|gb|EIS28187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-56]
gi|391610824|gb|EIS53064.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-61]
gi|391611220|gb|EIS53418.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-63]
gi|391624055|gb|EIS64745.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-65]
gi|391649859|gb|EIS87207.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-88]
gi|391667088|gb|EIT02461.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-91]
gi|391676890|gb|EIT11251.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-92]
gi|391677296|gb|EIT11614.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-94]
gi|391707793|gb|EIT39107.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-99]
gi|411173906|gb|EKS43943.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis INS]
Length = 705
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L E+ +L A++FGHE+ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I KQ R I D+ +L+ ++ T+D +I IL
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDAAEIQDILAS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTGILPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSAS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQDVPVKVMEVDRQGRIRLSI 689
>gi|322831218|ref|YP_004211245.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
gi|384256386|ref|YP_005400320.1| polynucleotide phosphorylase/polyadenylase [Rahnella aquatilis HX2]
gi|321166419|gb|ADW72118.1| polyribonucleotide nucleotidyltransferase [Rahnella sp. Y9602]
gi|380752362|gb|AFE56753.1| polynucleotide phosphorylase/polyadenylase [Rahnella aquatilis HX2]
Length = 707
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 515/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPTIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+S+
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L ED +L A++FGHE+ +I I+ IN LV VG+ K +W P +
Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHEQQQIVIDNINSLVAEVGKPKWDWQPEAVNA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ +SE ++ AY I KQ R I D+ +L E+ ++D +I+ IL
Sbjct: 241 ELHARVAALSESRLGDAYLITEKQERYNQINVIKADVVQAL-QAEDESLDAGEISDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L ++P
Sbjct: 360 RDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE ++LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGESFIVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISIPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|422019160|ref|ZP_16365710.1| polynucleotide phosphorylase/polyadenylase [Providencia
alcalifaciens Dmel2]
gi|414103702|gb|EKT65276.1| polynucleotide phosphorylase/polyadenylase [Providencia
alcalifaciens Dmel2]
Length = 706
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/690 (54%), Positives = 526/690 (76%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G IARQAT++V+V+++DT + T V+ K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+P E ET+++RLIDRP+RPLFPEG+LNEIQI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VG+I+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ ++ I INELV+ G++K +W P ++
Sbjct: 181 GTDSAVLMVESEAELLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ AY+I KQ R I +++ +L+ E+ +D+++++ IL
Sbjct: 241 ALHDRVAALAESRMGDAYRITEKQERYAQVDLIKEEVIGALV-AEDENVDVSEVSDILAH 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R +++ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKQVVRSRVIRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE+TD F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+
Sbjct: 360 RDAQVIDQLMGEYTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQA 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILSTMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINSPREEISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + +EA RRIE +T V++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGLKAKEAIRRIEDITAEVEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 660 EKVTDYLQMGQEVPVKVLEIDRQGRIRLSM 689
>gi|415830688|ref|ZP_11516556.1| polyribonucleotide nucleotidyltransferase [Escherichia coli OK1357]
gi|323183119|gb|EFZ68517.1| polyribonucleotide nucleotidyltransferase [Escherichia coli OK1357]
Length = 696
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/675 (55%), Positives = 518/675 (76%), Gaps = 1/675 (0%)
Query: 79 ISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPG 138
+++E G +ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAGRIPG
Sbjct: 1 MTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 60
Query: 139 SFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVS 198
SFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S
Sbjct: 61 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 120
Query: 199 TALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQ 258
ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VAGTE A++ VESE++
Sbjct: 121 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL 180
Query: 259 LPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIR 318
L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++ L +++ ++E ++
Sbjct: 181 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 240
Query: 319 KAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGL 378
AY+I +KQ R I + ++L+ E+ T+D N++ IL+ +E ++R ++L
Sbjct: 241 DAYRITDKQERYAQVDVIKSETIATLL-AEDETLDENELGEILHAIEKNVVRSRVLAGEP 299
Query: 379 RIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438
RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+RD Q +D LMGE TD
Sbjct: 300 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 359
Query: 439 SFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITES 498
+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +KF Y++R+VSEITES
Sbjct: 360 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITES 419
Query: 499 NGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFK 558
NGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFK
Sbjct: 420 NGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 479
Query: 559 VAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPR 618
VAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR
Sbjct: 480 VAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPR 539
Query: 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEK 678
+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE+
Sbjct: 540 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 599
Query: 679 LTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRV 738
+T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V V
Sbjct: 600 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 659
Query: 739 KVLGIDDRGRIKLSM 753
KVL +D +GRI+LS+
Sbjct: 660 KVLEVDRQGRIRLSI 674
>gi|437873025|ref|ZP_20848502.1| polynucleotide phosphorylase/polyadenylase, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|435334718|gb|ELP05184.1| polynucleotide phosphorylase/polyadenylase, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
Length = 687
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/678 (54%), Positives = 514/678 (75%), Gaps = 1/678 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 11 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 70
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 71 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 130
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 131 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 190
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 191 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 250
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 251 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLI-AEDETLDANELGEILHA 309
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 310 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 369
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 370 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 429
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 430 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 489
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 490 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 549
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 550 AINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 609
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 610 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 669
Query: 724 NIITDFLKENQKVRVKVL 741
+TD+L+ Q+V VKVL
Sbjct: 670 EKVTDYLQMGQEVPVKVL 687
>gi|77165581|ref|YP_344106.1| polynucleotide phosphorylase/polyadenylase [Nitrosococcus oceani
ATCC 19707]
gi|254433639|ref|ZP_05047147.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
gi|123593842|sp|Q3J9C0.1|PNP_NITOC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|76883895|gb|ABA58576.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus oceani
ATCC 19707]
gi|207089972|gb|EDZ67243.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
Length = 695
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/686 (54%), Positives = 508/686 (74%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K +YG + +E G IARQA+ +V+V +TV+L TVV K+ +FFPLTV+Y
Sbjct: 4 IKKVIEYGDRSLVLETGCIARQASGAVVVRYGETVVLVTVVGMKEAAEGRDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAG+IPG FFKREG+P+E+ET+ SRLIDRP+RPLFP+ ++NE+Q++ V+S + +
Sbjct: 64 ERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFINEVQVIATVISSDSEN 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI S+IG S AL++S +PF P+ A+VGYIDG+Y+LNPT Q++KS LDL+VAGTEK
Sbjct: 124 DPDIPSLIGASAALALSGIPFTTPIAAARVGYIDGQYVLNPTLGQMEKSALDLVVAGTEK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+++LPE+I+L +++F H++M++ I AI EL + G+ +W P ++++ L S
Sbjct: 184 AVLMVESEAQELPEEIMLGSVMFAHQEMQVVIQAIRELAEEAGKPAWDWKPPIEEEDLKS 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+ + E + ++AYQI++KQ R + + I SL+ EN + + LE +
Sbjct: 244 AVQEVGEARAQEAYQIRSKQERQASLAELRNSIVESLVPEENSRWSREQVLEAIGALEKR 303
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R+QIL G RID R IRPI+I TG+LPRTHGS+LFTRG+TQ+LV TLGT RD Q
Sbjct: 304 LVREQILSGGERIDGRDATAIRPINISTGLLPRTHGSALFTRGETQSLVATTLGTERDAQ 363
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDA+ GE + FMLHYN PP+ G+ G +G PKRREIGHGRLAKR+L V+P+ F Y
Sbjct: 364 VIDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNGVVPDEESFPY 423
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
IR+VSEITESNGSSSMA+VCG L+L+DAGVPI VAGIAMGLIK+ ++ +LSDILG
Sbjct: 424 VIRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEKDRFAVLSDILG 483
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A++G YIL+KM +
Sbjct: 484 DEDHLGDMDFKVAGTEKGITALQMDIKIDGITEEIMRTALSQAREGRFYILQKMNEIIST 543
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S++APR+I KI+P KIRDVIGKGG+TIR LTEETGT IDI D+G + I S +
Sbjct: 544 PRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDGTVKIFSADKA 603
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
GQEAKRR+E++ V++GK+Y G V RL DFGA + IL GKDGLLHISQIS++RV ++
Sbjct: 604 DGQEAKRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISAERVKNVS 663
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E +RVKVL +D +GR++LS+
Sbjct: 664 DKLSEGDVIRVKVLEVDKQGRVRLSV 689
>gi|392953990|ref|ZP_10319542.1| Polyribonucleotide nucleotidyltransferase [Hydrocarboniphaga effusa
AP103]
gi|391857889|gb|EIT68419.1| Polyribonucleotide nucleotidyltransferase [Hydrocarboniphaga effusa
AP103]
Length = 703
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/687 (54%), Positives = 505/687 (73%), Gaps = 2/687 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG ++ E G + RQAT++V+VS++ TV++ TVV+ K+ + +FFPLTVDY+
Sbjct: 11 IKKSFQYGDKTVTFETGHMVRQATAAVIVSVDQTVVMVTVVAKKEAKAGQDFFPLTVDYM 70
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YA GRIPG FFKREG+P+E+ET+ SRLIDRP+RPLFPEG+ NEIQ+V V+S+NP++
Sbjct: 71 ERTYAGGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPEGFYNEIQLVATVVSLNPEV 130
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
D DI +++G S AL++S +PF GP+G AKVGY +G+YILNP+ QL S LDL+VAGT
Sbjct: 131 DGDIPAMLGASAALALSGVPFQGPIGAAKVGYANGQYILNPSKTQLTTSQLDLVVAGTAD 190
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+K+L ED++L A+++GH +M+ AI AINELV G+ + NW P + L +
Sbjct: 191 AVMMVESEAKELSEDVMLGAVLYGHTQMQAAIRAINELVAEAGRPRWNWQPTAEAADLTT 250
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
I E ++ AY + +K R I KD ++LI E+ D + ++LES+
Sbjct: 251 AI-GAYEARVVDAYAVTDKGERYGALDAIRKDAVAALIAGEDARYDEGSVKDAFFNLESR 309
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +I+D RID R +RPISI G+LPRTHGS+LFTRG+TQ L VATLGT +D Q
Sbjct: 310 VVRNRIIDGQPRIDGRDTRTVRPISIDVGVLPRTHGSALFTRGETQVLAVATLGTGKDAQ 369
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK-FN 486
IDA+ GE+ D+FMLHYN PP++ G+ GR+ PKRREIGHGRLAKR + VLP+ K F
Sbjct: 370 LIDAVGGEYRDTFMLHYNFPPYSVGETGRLNAPKRREIGHGRLAKRGVAGVLPDLEKDFP 429
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
Y +R+VSE+TESNGSSSMASVCG CLAL+DAGVP+ VAG+AMGLI +G + +L+DIL
Sbjct: 430 YVVRVVSEVTESNGSSSMASVCGSCLALMDAGVPVKTPVAGVAMGLILEGNRYAVLTDIL 489
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAG+ NGITALQMDIKI G+ +I++ AL +A + +IL++M +P
Sbjct: 490 GDEDHLGDMDFKVAGSRNGITALQMDIKITGVNGEIMKQALAQALEARLHILDQMDQVLP 549
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ E+S +APR+ TIKI P KIR+VIGKGG TIR++TEETGT IDI+D+G + +A+ +
Sbjct: 550 APRKEMSNWAPRITTIKIHPDKIREVIGKGGVTIRSITEETGTTIDIDDDGTVKVAAVDK 609
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+ A RI LT V++G +Y G V +L DFGA + IL GKDGL+HISQ++ KRV +
Sbjct: 610 SAADAAIARILSLTRDVEVGTIYEGKVAKLMDFGAFVTILPGKDGLVHISQLADKRVEKV 669
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
D +KE Q VRVKVL +D +GRI+LSM
Sbjct: 670 EDVVKEGQAVRVKVLEVDKQGRIRLSM 696
>gi|422027504|ref|ZP_16373845.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
gi|414014723|gb|EKS98563.1| polynucleotide phosphorylase/polyadenylase [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
Length = 702
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 518/690 (75%), Gaps = 10/690 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I AIN+LV+ G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVND 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + LI E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLI-AEDETLDANELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ APR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AIN---------APRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 590
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 591 TDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 650
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 651 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 680
>gi|120597905|ref|YP_962479.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. W3-18-1]
gi|146293923|ref|YP_001184347.1| polynucleotide phosphorylase/polyadenylase [Shewanella putrefaciens
CN-32]
gi|386314675|ref|YP_006010840.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
200]
gi|187611297|sp|A4Y9B5.1|PNP_SHEPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611299|sp|A1RGY0.1|PNP_SHESW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120557998|gb|ABM23925.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. W3-18-1]
gi|145565613|gb|ABP76548.1| Polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
CN-32]
gi|319427300|gb|ADV55374.1| polyribonucleotide nucleotidyltransferase [Shewanella putrefaciens
200]
Length = 699
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/689 (54%), Positives = 519/689 (75%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYI+G+Y+LNPT Q++ S L+L+VAG
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVAQIETSQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE++ LPE+++L ++++GH++ ++ INAI E G+ +W V+D+T
Sbjct: 181 TASAVLMVESEAQALPEEVMLGSVVYGHDQQQVVINAIAEFKAEAGKPMWDWTAPVQDET 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+++I ++E + AY+I+ KQ R + +L+ + N ID+ +++ +L L
Sbjct: 241 LVAQIKELAEAGLGDAYKIQVKQDRYAQVAVVKAATKEALLAS-NPNIDLREVDNLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + IR +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT GITALQMDIKI GIT +I++IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRGGITALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVRIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVAVKVMEVDRQGRVRLSI 688
>gi|383188462|ref|YP_005198590.1| polyribonucleotide nucleotidyltransferase [Rahnella aquatilis CIP
78.65 = ATCC 33071]
gi|371586720|gb|AEX50450.1| polyribonucleotide nucleotidyltransferase [Rahnella aquatilis CIP
78.65 = ATCC 33071]
Length = 707
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 515/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPTIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+S+
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L ED +L A++FGHE+ +I I+ IN LV VG+ K +W P +
Sbjct: 181 GTQGAVLMVESEAEVLSEDQMLGAVVFGHEQQQIVIDNINSLVAEVGKPKWDWQPEAVNA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ +SE ++ AY I KQ R I D+ +L E+ ++D +I+ IL
Sbjct: 241 ELHARVAALSESRLGDAYLITEKQERYNQINVIKADVVQAL-QAEDESLDAGEISDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L ++P
Sbjct: 360 RDAQNLDELMGEKTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE ++LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGESFIVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISIPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|229900960|ref|ZP_04516084.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
gi|187611438|sp|Q1CM51.2|PNP_YERPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229682299|gb|EEO78391.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
Length = 705
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 516/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S LS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L E+ +L A++FGHE+ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I KQ R I D+ +L+ ++ T+D +I IL
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDAAEIQDILAS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTGILPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSAS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQDVPVKVMEVDRQGRIRLSI 689
>gi|71731606|gb|EAO33667.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Ann-1]
Length = 700
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/692 (54%), Positives = 513/692 (74%), Gaps = 9/692 (1%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L TVV+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPGSFFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S++P+
Sbjct: 63 QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI ++IG S ALS++ +PF GP+G AKVGY DG+YILNPT +LKKS L+L+VAGT
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+IFGH +M+ I I+ L G + +W P K+ L+
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKNDALV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-----IDNENLTIDINDINCIL 361
+ + ++ A+ I++K R + D+ L ++ NL + +
Sbjct: 243 IALKGVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFG--- 299
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+LE + +R +LD +RID R + +RPI+++ G+LPR HGS LFTRG+TQA+VV TLG
Sbjct: 300 -ELEYRTMRDALLDTEVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR GVPKRREIGHGRLA+R +L V+P+
Sbjct: 359 TARDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+
Sbjct: 419 LDEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ELS +APRL+TIKI P KIRDVIGKGGSTI+ +T+ETGTQIDI D+G I I
Sbjct: 539 DKALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS N+ + +EAKRRIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+
Sbjct: 599 ASVNNAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D LKE VRVKVL +D +GRI+LS+
Sbjct: 659 RVERVGDKLKEGDVVRVKVLEVDKQGRIRLSI 690
>gi|333983003|ref|YP_004512213.1| polyribonucleotide nucleotidyltransferase [Methylomonas methanica
MC09]
gi|333807044|gb|AEF99713.1| Polyribonucleotide nucleotidyltransferase [Methylomonas methanica
MC09]
Length = 692
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/689 (57%), Positives = 512/689 (74%), Gaps = 3/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K F+YG +++E GEIARQA +V++ +E T +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIRKQFQYGDRLVTLETGEIARQANGAVMIDVEGTSLLVTVVGKKE-AAGGDFFPLTV 59
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EKA+AAG+IPG FFKREG+PSE ET+ISRLIDRPIRPLFPEG+ NE+QI+ V+S+N
Sbjct: 60 NYQEKAFAAGKIPGGFFKREGRPSENETLISRLIDRPIRPLFPEGFTNEVQIIATVVSLN 119
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++D +I +++G S AL++S LPF GPLG A VGY DG Y+LNP+ +K+S L L+VAG
Sbjct: 120 PEVDTEIPALLGASAALAVSGLPFNGPLGAACVGYKDGNYLLNPSLAAMKESQLQLVVAG 179
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T KA++ VES++ LPED++L A++FGHE+M++AINAINEL VG + W P+ D
Sbjct: 180 TAKAVLMVESQADLLPEDVMLGAVLFGHEQMQVAINAINELAAEVGTPAMAWTPVESDAA 239
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L + + +E I+ AYQ+ K +R I + L ++ DI I+ L
Sbjct: 240 LKAAVAAEAEAAIKAAYQVPEKLVRQDQLSAIRSAVVEKLTADDQYAE--KDIRNIIEHL 297
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E I+R IL+ RID R + +RPISIRTG+LPRTHGS+LFTRG+TQA+VVATLGT R
Sbjct: 298 EYDIVRGAILNDRKRIDGRDLTTVRPISIRTGVLPRTHGSALFTRGETQAIVVATLGTER 357
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDAL GE+ D FMLHYN PP++ G+ G +G PKRREIGHGRLAKR + VLPN +
Sbjct: 358 DAQIIDALSGEYKDPFMLHYNFPPYSVGETGFVGSPKRREIGHGRLAKRGVAAVLPNMAE 417
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+G++ +LSD
Sbjct: 418 FPYVIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLIKEGDQFAVLSD 477
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG+ NG+TALQMDIKI GIT +I+++AL +AK G +IL +M
Sbjct: 478 ILGDEDHLGDMDFKVAGSENGVTALQMDIKIDGITPEIMKVALEQAKHGRLHILGEMNKA 537
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S FAPR+IT KIDP+KIR+VIGKGG TIR +TE+TG ID+ D+G++ +AS
Sbjct: 538 LGATREEMSDFAPRIITFKIDPAKIREVIGKGGVTIRAITEQTGASIDLTDDGVVNVASV 597
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +G+EA+R IE++T V++GKVY G V+RL DFGA + IL GKDGL+HISQIS +RV
Sbjct: 598 DRAAGEEARRMIEEITAEVEVGKVYEGKVVRLMDFGAFVTILPGKDGLVHISQISEERVE 657
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E VRVKVL ID +GR++LSM
Sbjct: 658 KVSDKLSEGDVVRVKVLEIDRQGRVRLSM 686
>gi|290473451|ref|YP_003466318.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus bovienii SS-2004]
gi|289172751|emb|CBJ79522.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus bovienii SS-2004]
Length = 714
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/693 (53%), Positives = 520/693 (75%), Gaps = 3/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + ++IE G +ARQAT++V+V+++DT + TVV K + +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+P E ET+++RLIDRP+RPLFPEG+LNE+QI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP ++PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT+++LK S LDL+VA
Sbjct: 121 NPLVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE++ L E+ +L A++FGHE+ +I I+ IN LV G++K +W P ++
Sbjct: 181 GTAGAVLMVESEAELLTEEQMLGAVVFGHEQQQIVIDHINALVAETGKEKWDWAPESINQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN---ENLTIDINDINCI 360
L ++ ++E ++ AY+I KQ R I +++ + ++ + + ++ +++ +
Sbjct: 241 PLHDRVAELAESRLGDAYRITEKQERYAQVNTIKEEVSAIIVAEAVEKGVELEKSEVLDV 300
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L LE ++R ++L RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATL
Sbjct: 301 LSVLEKNVVRGRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATL 360
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT RD Q ID LMGE D F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 361 GTERDAQVIDELMGERADRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 420
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
N+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V
Sbjct: 421 TANEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFV 480
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL
Sbjct: 481 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQAKGARLHILGV 540
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M+ + +N++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G +
Sbjct: 541 MEQAIQSPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 600
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IA+ +S A RRIE++T V++G++Y G V R+ DFGA + I GK+GL+HISQI+
Sbjct: 601 IAATDSDKAHHAIRRIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 660
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
KRV +TD+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 661 KRVEKVTDYLQLAQEVPVKVLEIDRQGRIRLSM 693
>gi|157376516|ref|YP_001475116.1| polynucleotide phosphorylase [Shewanella sediminis HAW-EB3]
gi|257096709|sp|A8FYR5.1|PNP_SHESH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157318890|gb|ABV37988.1| Polyribonucleotide nucleotidyltransferase [Shewanella sediminis
HAW-EB3]
Length = 704
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/688 (54%), Positives = 517/688 (75%), Gaps = 1/688 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K +FFPLTV+
Sbjct: 5 NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVN 64
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+P
Sbjct: 65 YQEKTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT 245
+I+PD+ S+IG S AL+IS LPF GPLGVA+VGY DG+Y+LNP QL S LDL+VAGT
Sbjct: 125 EINPDVISMIGTSAALAISGLPFNGPLGVARVGYTDGEYVLNPNVSQLVDSDLDLIVAGT 184
Query: 246 EKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTL 305
+ A++ VESE+ LPE+++L +++GH++ ++ I+AINEL + +W V+D L
Sbjct: 185 QGAVLMVESEAAALPEEVMLGGVVYGHDQQQVVISAINELKAEASKPAWDWTAPVQDADL 244
Query: 306 ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLE 365
++KI +++E ++ AYQI+ KQ R T + K + EN D+ +I+ +L LE
Sbjct: 245 VAKIKDLAEAEMAAAYQIEVKQDR-YTQVGVVKSAAKEALLAENPEADLREIDGLLGSLE 303
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+++R +I+ RID R + +R +++ G+LPRTHGS+LFTRG+TQALV TLGT RD
Sbjct: 304 KQVVRSRIIAGNPRIDGREPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGTERD 363
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
QK+D++MGE+T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +F
Sbjct: 364 AQKVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEF 423
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDI
Sbjct: 424 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 483
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT +GITALQMDIKI GI +I+QIAL +A +IL M +
Sbjct: 484 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGINKEIMQIALQQAYGARVHILNVMDQAI 543
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ++++S APR+ T+KI+P KIRDVIGKGG+TIR LTEETGT I++ D+G + IAS N
Sbjct: 544 GEHRDDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASAN 603
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA RRIE++T V++G +Y G V+R+ DFGA + IL GKDGL+HISQI+ +RV
Sbjct: 604 GDATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 663
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKV+ +D +GR++LSM
Sbjct: 664 VSDYLQVGQEVKVKVMEVDRQGRVRLSM 691
>gi|238760238|ref|ZP_04621383.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
gi|238701561|gb|EEP94133.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
Length = 706
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 518/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE++ L ED +L A++FGHE+ +I I IN LV G+ K +W ++
Sbjct: 181 GTAAAVLMVESEAQILSEDQMLGAVVFGHEQQQIVIENINALVAQAGKPKWDWHAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I KQ R I D+ + L+ + T++ +I+ IL D
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTAVLLAQDE-TLNAGEIHDILGD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K + V+LS
Sbjct: 420 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKKDDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++ ++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVNRIYDGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V+VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVKVKVMEVDRQGRIRLSI 689
>gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
43380]
gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
43380]
Length = 707
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 514/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ +I I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQIVIENINALVAEAGKPKWDWHAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++ ++ AY+I KQ R I D+ +L+ ++ T+D ++I IL
Sbjct: 241 ALRARVAELATARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDASEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+PN
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNAA 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRIRLSI 689
>gi|238761771|ref|ZP_04622745.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
33638]
gi|238699885|gb|EEP92628.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
33638]
Length = 706
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE++ L ED +L A++FGHE+ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAAAVLMVESEAQILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++ ++ AY+I KQ R I D+ +L+ ++ T+D ++I IL
Sbjct: 241 ALHARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDASEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++ ++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRIRLSI 689
>gi|188532508|ref|YP_001906305.1| polynucleotide phosphorylase/polyadenylase [Erwinia tasmaniensis
Et1/99]
gi|226702651|sp|B2VGN7.1|PNP_ERWT9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188027550|emb|CAO95397.1| Polyribonucleotide nucleotidyltransferase [Erwinia tasmaniensis
Et1/99]
Length = 710
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K FFPLT
Sbjct: 1 MLNPIVQKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQGFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S LPF GP+G A+VGY++ +Y+LNPT+++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L ED +L A++FGH++ +I I+ IN LV G+ + +W P ++
Sbjct: 181 GTKGAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L S+I ++E ++ AY+I KQ R I + ++L+ E+ +D +I+ +L+
Sbjct: 241 ALRSRITALAESRLSDAYRITEKQERYAQVDVIKSETSAALL-AEDEALDAAEISDLLHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+KD V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDENNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|123440817|ref|YP_001004808.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332160083|ref|YP_004296660.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|386311118|ref|YP_006007174.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|418239855|ref|ZP_12866399.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|433551947|ref|ZP_20507987.1| Polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
IP 10393]
gi|187611341|sp|A1JIX3.1|PNP_YERE8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33332421|gb|AAQ11418.1| PNPase [Yersinia enterocolitica]
gi|122087778|emb|CAL10564.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|318607357|emb|CBY28855.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664313|gb|ADZ40957.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862022|emb|CBX72189.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
W22703]
gi|351780681|gb|EHB22746.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|431787245|emb|CCO71027.1| Polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
IP 10393]
Length = 706
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++ ++ AY+I KQ R I D+ +L+ ++ T+D +I IL
Sbjct: 241 ALHARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDAAEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++ ++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD+L+ Q+V VKV+ +D +GRI+LSM
Sbjct: 660 DKVTDYLQMGQEVPVKVIEVDRQGRIRLSM 689
>gi|251791031|ref|YP_003005752.1| polynucleotide phosphorylase/polyadenylase [Dickeya zeae Ech1591]
gi|247539652|gb|ACT08273.1| Polyribonucleotide nucleotidyltransferase [Dickeya zeae Ech1591]
Length = 706
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 511/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPG FF+REG+PSE ET+ISRLIDRPIRPLFP+G++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTTE+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ L ED +L A++FGH++ +I I I L G+ K +W +
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWSWQAPDVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ +SE ++ AY+I KQ R I D+ ++L+ E+ T+D N++ IL
Sbjct: 241 ELHNRVQALSEARLGDAYRITEKQERYAQVDTIKADVVAALL-AEDETLDENELRDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 IEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|307129389|ref|YP_003881405.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
gi|306526918|gb|ADM96848.1| polynucleotide phosphorylase/polyadenylase [Dickeya dadantii 3937]
Length = 706
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/690 (54%), Positives = 511/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+G++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTTE+LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ L ED +L A++FGH++ +I I I L G+ K NW +
Sbjct: 181 GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQIVIENIKSLTAEAGKPKWNWQAPEINV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ +SE ++ AY+I KQ R I D+ ++L+ E+ T+D N++ IL
Sbjct: 241 ELHDRVKALSEARLGDAYRITEKQERYAQVDTIKSDVVAALL-AEDDTLDENELRDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 IEKNVVRSRVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L+GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQIIDELIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IAS
Sbjct: 540 AISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>gi|257096716|sp|B0RRB8.2|PNP_XANCB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 704
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 510/690 (73%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ IN INEL G K W K+ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKNTALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ A+Q+++K R I KD+ SL + +E + +++ +
Sbjct: 243 SALKEAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSS--AELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +R +L+ +RID R ++ +RPIS++ G+LPRTHGS+LFTRG+TQA+VV TLGT+
Sbjct: 301 LEYHTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ ++ V+LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSK 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 601 VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 661 EKVGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|152979713|ref|YP_001345342.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
succinogenes 130Z]
gi|187470960|sp|A6VR10.1|PNP_ACTSZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150841436|gb|ABR75407.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
succinogenes 130Z]
Length = 707
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/689 (54%), Positives = 515/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + +VV+ K+ +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E++YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+LNEIQI+ V+SVN
Sbjct: 61 DYQERSYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALALSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI ELV+ G+ + +W D
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKELVKEAGKPRWDWVAPEPDTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+++ I+E ++ AY+I KQ+R I D+ + I EN + I I L
Sbjct: 241 LINQVKVIAESRLGDAYRITEKQVRYEQIDAIKADVIAQ-ITAENEEVSEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL V TLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVVTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q +D L GE D+F+ HYN PP++ G+ GR+G PKRREIGHGRLAKR + V+P+ ++
Sbjct: 360 DAQILDELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ +K V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEEDKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S++APR+ T+KIDP KI+DVIGKGG+TIRTLTEETGT IDI+D+G + IA+
Sbjct: 540 IAAPRAEISEYAPRIYTMKIDPKKIKDVIGKGGATIRTLTEETGTSIDIDDDGTVKIAAI 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + +E RIE++T V+ G VYTG V RL DFGA + IL K+GL+HISQI+ +RV
Sbjct: 600 DGNAVKEVMARIEEITAEVEAGAVYTGKVTRLADFGAFVAILGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q V+VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQDVQVKVVEIDRQGRIRLTM 688
>gi|127513750|ref|YP_001094947.1| polynucleotide phosphorylase/polyadenylase [Shewanella loihica
PV-4]
gi|187611300|sp|A3QGU0.1|PNP_SHELP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|126639045|gb|ABO24688.1| Polyribonucleotide nucleotidyltransferase [Shewanella loihica PV-4]
Length = 700
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/689 (55%), Positives = 511/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I P++ S+IG S ALSIS +PF GPLG A+VGY+DG+YILNPT QL+ S L+L VAG
Sbjct: 121 PEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ LPE+++L A+++GHE+ ++ I AI EL V + +W V+++
Sbjct: 181 TENAVLMVESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L++K+ +++E + +AYQI KQ R + +L+ EN D +I+ +L L
Sbjct: 241 LVAKVKDLAEAGLTEAYQIVVKQDRYAQVDVVKTAAKEALL-AENPDADAREIDGLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + +R +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRSRIIAGNPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P +
Sbjct: 360 DAQKIDSIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YSIR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+QIAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S APR+ T+KI+P KIRDVIGKGG+TIR LTEETGT I++ D+G + IAS
Sbjct: 540 ISGHRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASA 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRI+++T V++G VY G V+R+ DFGA + IL GKDGL+HISQI+ +RV
Sbjct: 600 NGDATKEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKV+ +D +GR++LSM
Sbjct: 660 NVSDYLEVGQEVKVKVMEVDRQGRVRLSM 688
>gi|90409343|ref|ZP_01217432.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
gi|90309551|gb|EAS37747.1| polyribonucleotide nucleotidyltransferase [Psychromonas sp. CNPT3]
Length = 700
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/686 (54%), Positives = 513/686 (74%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+KSF+YG + +++E G +ARQAT++V+ S++DT + +VV + +FFPLTV+Y
Sbjct: 4 IVKSFQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKQATDEERDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAG+IPG FFKREG+PSE ET+ISRLIDRP+RPLFP G+ NE+Q++ V+S+NP+I
Sbjct: 64 EKTYAAGKIPGGFFKREGRPSEEETLISRLIDRPVRPLFPAGFKNEVQVIATVVSINPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
+PDI ++I S ALSIS +PF GP+G A+VGYIDG+Y+LNPT +L+ S L+L+V+GTE
Sbjct: 124 NPDIVAMIATSAALSISGMPFNGPIGCARVGYIDGQYLLNPTKTELEASDLNLVVSGTEN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L ED++L A+++GHE+ ++ ++AINE V + K +W V++ L +
Sbjct: 184 AVLMVESEAGILSEDVMLGAVVYGHEQQQVVVSAINEFAAEVARPKWDWSAPVRNDALDA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
I ++ +I +AYQI +K R K I+ ++ L+ + T++ I L+DLE
Sbjct: 244 LIATEAQSRIEEAYQISDKGDRYDALKIITSEVKEKLLAADE-TLEAKQIGEYLHDLEKT 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +I+ RID R +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT RD Q
Sbjct: 303 VVRTRIIKGEPRIDGRDPESVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID+LMGE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +F Y
Sbjct: 363 IIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPDLEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G++ V+LSDILG
Sbjct: 423 TVRVVSEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGDEFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +IL M + +
Sbjct: 483 DEDHLGDMDFKVAGTSEGITALQMDIKIEGITKEIMQIALNQAKAARLHILSVMDEAISE 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S+FAPR+ TIKI KIRDVIGKGG+TIR L EETGT I+I D+G + IA+ ++
Sbjct: 543 GRADISEFAPRIHTIKIPTDKIRDVIGKGGATIRALCEETGTTIEIEDDGTVKIAATSAE 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
++A RI+ LT V++G +YTG V+RL DFGA + IL GKDGL+HISQI +RV ++
Sbjct: 603 QAEDAINRIKTLTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQKVS 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+LKE Q+V+VKVL +D +GR++LS+
Sbjct: 663 DYLKEGQEVKVKVLEVDRQGRVRLSI 688
>gi|253991498|ref|YP_003042854.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
asymbiotica]
gi|211638376|emb|CAR66998.1| polyribonucleotide nucleotidyltransferase (ec 2.7.7.8)
(polynucleotid phosphorylase) (pnpase) (cap87k)
[Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782948|emb|CAQ86113.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
asymbiotica]
Length = 708
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/690 (53%), Positives = 521/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ + I++ F+YG + I+IE G +ARQAT++V+V+++DT + TVV K + +FFPLT
Sbjct: 1 MLSPIVRKFQYGQHTIAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR+PGSFF+REG+P E ET+++RLIDRP+RPLFPEG+LNE+QIV V+SV
Sbjct: 61 VNYQERTYAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT+++LK S LDL+V+
Sbjct: 121 NPQVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L E+ +L A++FGH++ ++ I+ IN LV G++K +W P ++
Sbjct: 181 GTAGAVLMVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALVAEAGKEKWDWAPEPINQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ AY+I KQ R I ++ ++L++ + +D +I+ IL +
Sbjct: 241 ELHDRVAALAESRLGDAYRITEKQERYAQVDVIKDEVIAALLEQDE-ALDEAEIHEILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKNVVRSRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TD F+LHYN PP++ G+ G IG PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RDAQIIDELMGERTDRFLLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ G++ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGVSALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ +N++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINCPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAISRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVADYLQVGQEVSVKVLEVDRQGRVRLSI 689
>gi|114321093|ref|YP_742776.1| polynucleotide phosphorylase/polyadenylase [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227487|gb|ABI57286.1| Polyribonucleotide nucleotidyltransferase [Alkalilimnicola
ehrlichii MLHE-1]
Length = 720
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/709 (54%), Positives = 509/709 (71%), Gaps = 7/709 (0%)
Query: 52 SRRG-----LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILAT 106
SRRG + + + + KSF+YG++ +++E G +ARQA +VLV++ DTV+L T
Sbjct: 5 SRRGGAPRQSFQEQPDIIVKSVKKSFQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVT 64
Query: 107 VVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLF 166
V K+ FFPLTV+Y E+ YAAG+IPG FFKREG+PSE+ET+ RLIDRPIRPLF
Sbjct: 65 AVGRKEADPGKGFFPLTVNYQERTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLF 124
Query: 167 PEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYIL 226
PEG+ NE+Q+V VLS+NP++D DI ++IG S ALSIS +PF GP+G A+VGY DG+Y+L
Sbjct: 125 PEGFYNEVQVVATVLSMNPEVDADIPALIGASAALSISGIPFDGPIGAARVGYKDGEYLL 184
Query: 227 NPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELV 286
NPT E+ S LDL+VAGTE A++ VESE+ QLPE+ +L A+++GHE+M++AI AINEL
Sbjct: 185 NPTFEETAASDLDLVVAGTENAVLMVESEANQLPEEAMLGAVLYGHEQMQVAIQAINELT 244
Query: 287 QNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID 346
G+ + +W P D L + I ++ + AYQI KQ R + + +L +
Sbjct: 245 AEAGKPRWDWHPPQGDAALETAIKDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGE 304
Query: 347 N--ENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGS 404
N E D+ LE I+R +IL RID R +RPI I G LPRTHGS
Sbjct: 305 NREEEGGWPEKDVGDAFKGLEKDIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGS 364
Query: 405 SLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRRE 464
++FTRG+TQA+VV TLGT RD Q IDA+ GE + FMLHYN PP+ G+ G +G PKRRE
Sbjct: 365 AIFTRGETQAVVVTTLGTGRDAQIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRRE 424
Query: 465 IGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEH 524
IGHG+LAKR + V+P + Y IR+VSEITESNGSSSMA+VCG L+L+DAGVP+
Sbjct: 425 IGHGKLAKRGIEAVMPAADDCPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAP 484
Query: 525 VAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQ 584
VAGIAMGLIK+ E+ +LSDILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++
Sbjct: 485 VAGIAMGLIKEDEQFAVLSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIME 544
Query: 585 IALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLT 644
AL +A++G +IL +M + ++E+S++APRL+TI+IDP KIRDVIGKGG+TIR LT
Sbjct: 545 QALEQAREGRLHILGEMNNAISGPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALT 604
Query: 645 EETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIR 704
EETGT IDI+D+G +TIAS + + EA+RRIE LT V++G VY G V +L DFGA +
Sbjct: 605 EETGTTIDISDDGKVTIASADKAAADEARRRIELLTADVEVGTVYEGKVSKLMDFGAFVN 664
Query: 705 ILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
IL G+DGL+HISQIS++RV + D+LKE VRVKVL +D +GRI+LSM
Sbjct: 665 ILPGRDGLVHISQISNERVERVGDYLKEGDTVRVKVLEVDRQGRIRLSM 713
>gi|2462716|emb|CAA71697.1| pnp [Yersinia enterocolitica]
Length = 711
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/694 (54%), Positives = 517/694 (74%), Gaps = 1/694 (0%)
Query: 60 KGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNF 119
K L II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +F
Sbjct: 2 KDTILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSF 61
Query: 120 FPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVY 179
FPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++
Sbjct: 62 FPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIAT 121
Query: 180 VLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLD 239
V+SVNPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LD
Sbjct: 122 VVSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLD 181
Query: 240 LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPI 299
L+VAGT A++ VESE+ L ED +L A++FGHE+ ++ I IN LV G+ K +W
Sbjct: 182 LVVAGTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAE 241
Query: 300 VKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINC 359
++ L +++ ++ ++ AY+I KQ R I D+ +L+ ++ T+D +I
Sbjct: 242 PVNEALHARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDAAEIQD 300
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV AT
Sbjct: 301 ILGSVEKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 360
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT+RD Q ID LMGE TDSF+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+
Sbjct: 361 LGTARDAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 420
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ ++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E
Sbjct: 421 PSPSEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF 480
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
V+LSDILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL
Sbjct: 481 VVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILG 540
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M+ + + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT IDI +G I
Sbjct: 541 VMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDIEADGTI 600
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + + A RRIE++T +++ ++Y G V R+ DFGA + I GK+GL+HISQI+
Sbjct: 601 KIAATDGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIA 660
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
KRV+ +TD+L+ Q+V VKV+ +D +GRI+LSM
Sbjct: 661 DKRVDKVTDYLQMGQEVPVKVIEVDRQGRIRLSM 694
>gi|343518066|ref|ZP_08755062.1| polyribonucleotide nucleotidyltransferase [Haemophilus pittmaniae
HK 85]
gi|343394917|gb|EGV07464.1| polyribonucleotide nucleotidyltransferase [Haemophilus pittmaniae
HK 85]
Length = 710
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/689 (55%), Positives = 510/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+LNEIQI+ V+SVN
Sbjct: 61 DYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+GVA+VG+I+ +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGVARVGFINDQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L+A++FGH++ ++ + AI E + G+ + +W D
Sbjct: 181 TDKAVLMVESEADVLSEEQMLSAVVFGHQQQQVVVEAIKEFAREAGKPRWDWTAPAVDTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I EN + I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQSRYEQIDAIKADVIAQ-ITAENEEVSEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q +D L GE D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR + V+P +
Sbjct: 360 DAQILDELTGERQDHFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVAAVMPTLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+K V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALKQAKGARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + E+S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRAEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ + + RI+++T V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DNNAAKAVMARIDEITAEVEAGAIYKGKVTRLADFGAFVAIIGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVDVKVVEIDRQGRIRLTM 688
>gi|157962873|ref|YP_001502907.1| polynucleotide phosphorylase/polyadenylase [Shewanella pealeana
ATCC 700345]
gi|257096708|sp|A8H735.1|PNP_SHEPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157847873|gb|ABV88372.1| Polyribonucleotide nucleotidyltransferase [Shewanella pealeana ATCC
700345]
Length = 704
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/688 (55%), Positives = 516/688 (75%), Gaps = 1/688 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K +FFPLTV+
Sbjct: 5 NPIVKSFQYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVN 64
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP G+ NE+Q+++ V+SV+P
Sbjct: 65 YQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT 245
+I P++ S+IG S ALSIS +PF GPLG A+VGY++G+YILNPT QL S L+L VAGT
Sbjct: 125 EISPEVISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGT 184
Query: 246 EKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTL 305
E A++ VESE+ LPE+++L A+++GH++ ++ I AI EL V + +W +D+TL
Sbjct: 185 ESAVLMVESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWSAPAQDETL 244
Query: 306 ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLE 365
++KI +++E + +AYQI+ KQ R + +L+ EN + +I+ +L LE
Sbjct: 245 VAKIKDLAEAGLTEAYQIEVKQDRYAQVGVVKNAAKEALL-AENPDANTREIDGLLGSLE 303
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
K++R +I+ RID R + +R +++ G+LPRTHGSSLFTRG+TQALV TLGT RD
Sbjct: 304 KKVVRGRIISGQPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERD 363
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
QKID++MGE+T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P +F
Sbjct: 364 AQKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF 423
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDI
Sbjct: 424 PYSVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 483
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +A +IL+ M +
Sbjct: 484 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALKQAYGARVHILDVMDRAI 543
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ++S+ APR+ TIKI+P KIRDVIGKGG+TIR LTEETGT I+++D+G + IAS N
Sbjct: 544 SGHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSN 603
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA RRIE++T V++G VY G V+R+ DFGA + IL GKDGL+HISQI+ +RV
Sbjct: 604 GEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 663
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKV+ +D +GR++LSM
Sbjct: 664 VSDYLEVGQEVKVKVMEVDRQGRVRLSM 691
>gi|21231940|ref|NP_637857.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767933|ref|YP_242695.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. 8004]
gi|81306090|sp|Q4UW98.1|PNP_XANC8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81793552|sp|Q8P7V1.1|PNP_XANCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21113669|gb|AAM41781.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573265|gb|AAY48675.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. 8004]
Length = 704
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 510/690 (73%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ IN INEL G K W K+ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKNTALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ A+Q+++K R I KD+ SL + +E + +++ +
Sbjct: 243 SALKEAVGTQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSS--AELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +R +L+ +RID R ++ +RPIS++ G+LPRTHGS+LFTRG+TQA+VV TLGT+
Sbjct: 301 LEYHTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ ++ V+LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSK 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 601 VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 661 EKVGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|187471095|sp|Q0A7A1.2|PNP_ALHEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 698
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/691 (55%), Positives = 502/691 (72%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
+ KSF+YG++ +++E G +ARQA +VLV++ DTV+L T V K+ FFPLTV
Sbjct: 1 MKSVKKSFQYGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE+ET+ RLIDRPIRPLFPEG+ NE+Q+V VLS+N
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++D DI ++IG S ALSIS +PF GP+G A+VGY DG+Y+LNPT E+ S LDL+VAG
Sbjct: 121 PEVDADIPALIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ QLPE+ +L A+++GHE+M++AI AINEL G+ + +W P D
Sbjct: 181 TENAVLMVESEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRWDWHPPQGDAA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L + I ++ + AYQI KQ R + + +L +N E D+
Sbjct: 241 LETAIKDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGENREEEGGWPEKDVGDAFK 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE I+R +IL RID R +RPI I G LPRTHGS++FTRG+TQA+VV TLGT
Sbjct: 301 GLEKDIVRGRILAGERRIDGRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q IDA+ GE + FMLHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P
Sbjct: 361 GRDAQIIDAIEGERKEQFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMPAA 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ Y IR+VSEITESNGSSSMA+VCG L+L+DAGVP+ VAGIAMGLIK+ E+ +L
Sbjct: 421 DDCPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++ AL +A++G +IL +M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREGRLHILGEMN 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++E+S++APRL+TI+IDP KIRDVIGKGG+TIR LTEETGT IDI+D+G +TIA
Sbjct: 541 NAISGPRSEMSEYAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGTTIDISDDGKVTIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
S + + EA+RRIE LT V++G VY G V +L DFGA + IL G+DGL+HISQIS++R
Sbjct: 601 SADKAAADEARRRIELLTADVEVGTVYEGKVSKLMDFGAFVNILPGRDGLVHISQISNER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V + D+LKE VRVKVL +D +GRI+LSM
Sbjct: 661 VERVGDYLKEGDTVRVKVLEVDRQGRIRLSM 691
>gi|420260773|ref|ZP_14763443.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica WA-314]
gi|404511794|gb|EKA25659.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica WA-314]
Length = 706
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++ ++ AY+I KQ R I D+ +L+ ++ T+D +I IL
Sbjct: 241 ALHARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDAAEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++ ++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD+L+ Q+V VKV+ +D +GRI+LSM
Sbjct: 660 DKVTDYLQMGQEVPVKVIEVDRQGRIRLSM 689
>gi|384428462|ref|YP_005637822.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
pv. raphani 756C]
gi|341937565|gb|AEL07704.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
pv. raphani 756C]
Length = 704
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 510/690 (73%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ IN INEL G K W K+ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKNTALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ A+Q+++K R I KD+ SL + +E + +++ +
Sbjct: 243 SALKEAVGTQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSS--AELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +R +L+ +RID R ++ +RPIS++ G+LPRTHGS+LFTRG+TQA+VV TLGT+
Sbjct: 301 LEYHTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ ++ V+LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSK 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 601 VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 661 EKVGDRLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|117618225|ref|YP_857790.1| polynucleotide phosphorylase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|187470961|sp|A0KND9.1|PNP_AERHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117559632|gb|ABK36580.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 712
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLTV
Sbjct: 1 MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q+V V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VGY++G+Y+LNPTT +L +S LDL+VAG
Sbjct: 121 PAVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ L E+++L A++FGHE+M+ INAINE +VG K NW ++
Sbjct: 181 TANAVLMVESEAAILSEEVMLGAVVFGHEQMQAVINAINEFAADVGTKPWNWTAPAVNEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +K+ ++ ++ +AY+I K +R T I + +I + + D I + L
Sbjct: 241 LKAKVAELATAELGEAYRITEKAVRYETIGAIKARVVEQVIAS-GVEEDAKKIGEEFHSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +++ RID R IR +S+ TG+LPR HGS+LFTRG+TQA+VVATLGT R
Sbjct: 300 ESRIVRGRVVRGEPRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L G D FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ ++
Sbjct: 360 DAQNIDELTGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A+ +IL+ M
Sbjct: 480 ILGDEDHLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+++D+G + IA+
Sbjct: 540 IQAPRAEISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + +EA RRIE +T +++ ++Y G V+RL DFGA + IL GKDGL+HISQI+ RV
Sbjct: 600 DGDAAKEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQ 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+LK V+VKVL +D +GR++LS+
Sbjct: 660 NVADYLKIGDVVKVKVLEVDRQGRVRLSI 688
>gi|240949645|ref|ZP_04753980.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
NM305]
gi|240295903|gb|EER46579.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
NM305]
Length = 711
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/686 (55%), Positives = 508/686 (74%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTVDY
Sbjct: 4 IVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPTT + + S LDL+VAGT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L A++FGHE+ ++ I I E V+ G+ + +W + LI+
Sbjct: 184 AVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E ++ AY+I KQ R I D+ + L E+ TI I I+ LES+
Sbjct: 244 KVKALAEVRLGDAYRITEKQARYEQIDAIKADVIAQLT-AEDETISSGKIVDIITALESQ 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +I+ RID R V+ +R + I TG+LPRTHGS+LFTRG+TQAL VATLGT RD Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITSEIMRIALNQAKGARMHILGVMEQAIPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+ ++
Sbjct: 543 PRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE++ V++ +Y G V R+ DFGA + IL GK+GL+HISQI+ RV +
Sbjct: 603 AAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITEARVERVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q+V+VKV+ ID +GRI+L+M
Sbjct: 663 DYLSVGQEVQVKVVEIDRQGRIRLTM 688
>gi|238797549|ref|ZP_04641046.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
43969]
gi|238718546|gb|EEQ10365.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
43969]
Length = 706
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I KQ R I D+ +L+ + +++ ++I IL D
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDE-SLNASEIQDILGD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++ ++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRIRLSI 689
>gi|238783512|ref|ZP_04627534.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
43970]
gi|238715567|gb|EEQ07557.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
43970]
Length = 706
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I KQ R I D+ +L+ + +++ ++I IL D
Sbjct: 241 ALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALLAQDE-SLNASEIQDILGD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++ ++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKV+ +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVMEVDRQGRIRLSI 689
>gi|258620317|ref|ZP_05715355.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
gi|424809621|ref|ZP_18234998.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus SX-4]
gi|258587196|gb|EEW11907.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
gi|342323109|gb|EGU18895.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus SX-4]
Length = 709
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + INAINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALL-AENEALDAKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|28198126|ref|NP_778440.1| polynucleotide phosphorylase [Xylella fastidiosa Temecula1]
gi|417559526|ref|ZP_12210433.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
EB92.1]
gi|28056186|gb|AAO28089.1| polynucleotide phosphorylase [Xylella fastidiosa Temecula1]
gi|338177854|gb|EGO80892.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
EB92.1]
Length = 719
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/709 (53%), Positives = 517/709 (72%), Gaps = 17/709 (2%)
Query: 50 HHSRRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVS 109
HH + L+ KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L TVV+
Sbjct: 13 HHPKETLVA--------KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVA 64
Query: 110 CKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEG 169
K +FFPLTVDY EK YA GRIPGSFFKREG+ +E+ET+ISRLIDRPIRPLFPE
Sbjct: 65 AKTAREGQDFFPLTVDYQEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPED 124
Query: 170 YLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPT 229
Y NE+QI+ V+S++P+ID DI ++IG S ALS++ +PF GP+G AKVGY DG+YILNPT
Sbjct: 125 YKNEVQIIAMVMSLDPEIDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPT 184
Query: 230 TEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNV 289
+LKKS L+L+VAGT A++ VESE+ L E+++L A+IFGH +M+ I I+ L
Sbjct: 185 VSELKKSQLELVVAGTANAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEA 244
Query: 290 GQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL----- 344
+ +W P K+ L+ + + ++ A+ I++K R + D+ L
Sbjct: 245 CTQPSDWVPPAKNDALVIALKKVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLE 304
Query: 345 IDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGS 404
++ NL + + +LE + +R +LD +RID R + +RPI+++ G+LPR HGS
Sbjct: 305 VEGWNLAELLKEFG----ELEYRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGS 360
Query: 405 SLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRRE 464
LFTRG+TQA+VV TLGT+RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR GVPKRRE
Sbjct: 361 GLFTRGETQAIVVTTLGTARDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRRE 420
Query: 465 IGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEH 524
IGHGRLA+R +L V+P+ ++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+
Sbjct: 421 IGHGRLARRGVLAVMPSLDEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAP 480
Query: 525 VAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQ 584
VAGIAMGL+K+GE+ V+LSDILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++
Sbjct: 481 VAGIAMGLVKEGERFVVLSDILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMR 540
Query: 585 IALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLT 644
AL +AK G +IL +M + + ELS +APRL+TIKI P KIRDVIGKGGSTI+ +T
Sbjct: 541 QALQQAKVGRLHILGEMDKALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAIT 600
Query: 645 EETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIR 704
+ETGTQIDI D+G I IAS N+ + +EAKRRIE++T V+ G++Y G V ++ DFGA +
Sbjct: 601 KETGTQIDIQDDGTIVIASVNNAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVT 660
Query: 705 ILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
IL GKDGL+H+SQISS+RV + D LKE VRVKVL +D +GRI+LS+
Sbjct: 661 ILPGKDGLVHVSQISSERVERVGDKLKEGDVVRVKVLEVDKQGRIRLSI 709
>gi|167625054|ref|YP_001675348.1| polynucleotide phosphorylase/polyadenylase [Shewanella halifaxensis
HAW-EB4]
gi|257096707|sp|B0TQ97.1|PNP_SHEHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167355076|gb|ABZ77689.1| Polyribonucleotide nucleotidyltransferase [Shewanella halifaxensis
HAW-EB4]
Length = 704
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/688 (55%), Positives = 516/688 (75%), Gaps = 1/688 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K +FFPLTV+
Sbjct: 5 NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFPLTVN 64
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP G+ NE+Q+++ V+SV+P
Sbjct: 65 YQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT 245
+I P++ S+IG S ALSIS +PF GPLG A+VGY++G+YILNPT QL S L+L VAGT
Sbjct: 125 EISPEVISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELSVAGT 184
Query: 246 EKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTL 305
+ A++ VESE+ LPE+++L A+++GH++ ++ I AI EL V + +W V+D+TL
Sbjct: 185 DSAVLMVESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWAAPVQDETL 244
Query: 306 ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLE 365
++KI +++E + +AYQI+ KQ R + +L+ EN + +I+ +L LE
Sbjct: 245 VAKIKDLAEAGLTEAYQIEVKQDRYAQVGVVKNAAKEALL-AENPDANTREIDGLLGSLE 303
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
K++R +I+ RID R + +R +++ G+LPRTHGSSLFTRG+TQALV TLGT RD
Sbjct: 304 KKVVRGRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERD 363
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
QKID++MGE+T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P +F
Sbjct: 364 AQKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF 423
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDI
Sbjct: 424 PYSVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 483
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +A +IL M +
Sbjct: 484 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAI 543
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ++S+ APR+ TIKI+P KIRDVIGKGG+TIR LTEETGT I+++D+G + IAS N
Sbjct: 544 GSHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSN 603
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA RRIE++T V++G VY G V+R+ DFGA + IL GKDGL+HISQI+ +RV
Sbjct: 604 GEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 663
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKV+ +D +GR++LSM
Sbjct: 664 VSDYLEVGQEVKVKVMEVDRQGRVRLSM 691
>gi|258624688|ref|ZP_05719622.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
gi|258582975|gb|EEW07790.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM603]
Length = 709
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + INAINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALL-AENEALDAKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|8928245|sp|O34275.2|PNP_YEREN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 706
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 516/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWHAEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++ ++ AY+I KQ R I D+ +L+ ++ T+D +I IL
Sbjct: 241 ALHARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEALLAQDD-TLDAAEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TDSF+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+ETGT IDI +G I IA+
Sbjct: 540 AISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGTTIDIEADGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++ ++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD+L+ Q+V VKV+ +D +GRI+LSM
Sbjct: 660 DKVTDYLQMGQEVPVKVIEVDRQGRIRLSM 689
>gi|425063811|ref|ZP_18466936.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida X73]
gi|404382365|gb|EJZ78826.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida X73]
Length = 751
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/697 (55%), Positives = 508/697 (72%), Gaps = 2/697 (0%)
Query: 59 MKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
K N L N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +
Sbjct: 32 FKRNILVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQD 91
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQIV
Sbjct: 92 FFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVA 151
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPT + K+S L
Sbjct: 152 TVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRL 211
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGT+KA++ VESE+ L E+ +L A++FGH++ ++ I+AI E G+ + +W
Sbjct: 212 DLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVA 271
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIND-- 356
+ LI K+ I+E ++ +AY+I KQ R I D+ + + DI++
Sbjct: 272 PEPNTALIEKVKAIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGK 331
Query: 357 INCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALV 416
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 332 IVDIFTALESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALA 391
Query: 417 VATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALL 476
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 392 VATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVA 451
Query: 477 PVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDG 536
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 452 AVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKED 511
Query: 537 EKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSY 596
EK V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +
Sbjct: 512 EKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLH 571
Query: 597 ILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE 656
IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+
Sbjct: 572 ILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDD 631
Query: 657 GIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHIS 716
G + IA+ + S +E RIE +T V+ G VY G V RL DFGA + I+ K+GL+HIS
Sbjct: 632 GTVKIAAVDGNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHIS 691
Query: 717 QISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
QI+ +RV ++D+L Q+V VKV+ ID +GRI+L+M
Sbjct: 692 QIAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTM 728
>gi|257464719|ref|ZP_05629090.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
202]
gi|257450379|gb|EEV24422.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
202]
Length = 711
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/686 (55%), Positives = 509/686 (74%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTVDY
Sbjct: 4 IVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPT + + S LDL+VAGT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMSEQRLSRLDLVVAGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L A++FGHE+ ++ I I E V+ G+ + +W + LI+
Sbjct: 184 AVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E +I AY+I KQ R I ++ ++L E+ T+ I I+ LES+
Sbjct: 244 KVKALAEARIGDAYRITEKQARYEQIDAIKAEVIATLT-AEDETVSEGKIIDIITALESQ 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +I+ RID R V+ +R + I TG+LPRTHGS+LFTRG+TQAL VATLGT RD Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+ ++
Sbjct: 543 PRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE++ V++ +Y G V R+ DFGA + IL GK+GL+HISQI+ RV +T
Sbjct: 603 AAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVT 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q+V+VKV+ ID +GRI+L+M
Sbjct: 663 DYLSVGQEVQVKVVEIDRQGRIRLTM 688
>gi|333925319|ref|YP_004498898.1| polyribonucleotide nucleotidyltransferase [Serratia sp. AS12]
gi|333930272|ref|YP_004503850.1| polyribonucleotide nucleotidyltransferase [Serratia plymuthica AS9]
gi|386327143|ref|YP_006023313.1| Polyribonucleotide nucleotidyltransferase [Serratia sp. AS13]
gi|333471879|gb|AEF43589.1| Polyribonucleotide nucleotidyltransferase [Serratia plymuthica AS9]
gi|333489379|gb|AEF48541.1| Polyribonucleotide nucleotidyltransferase [Serratia sp. AS12]
gi|333959476|gb|AEG26249.1| Polyribonucleotide nucleotidyltransferase [Serratia sp. AS13]
Length = 707
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/690 (54%), Positives = 512/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTTDELKESSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ +I I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY I KQ R I + +L+ + T+D ++I IL
Sbjct: 241 ALHARVAELAESRLGDAYHITEKQERYAQVDAIKSSVVEALLAQDE-TLDASEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L ++P
Sbjct: 360 RDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|411008261|ref|ZP_11384590.1| polynucleotide phosphorylase/polyadenylase [Aeromonas aquariorum
AAK1]
gi|423195556|ref|ZP_17182139.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
SSU]
gi|404633331|gb|EKB29880.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
SSU]
Length = 712
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLTV
Sbjct: 1 MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q+V V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VGY++G+Y+LNPTT +L +S LDL+VAG
Sbjct: 121 PAVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ L E+++L A++FGHE+M+ INAINE +VG K NW ++
Sbjct: 181 TANAVLMVESEAAILSEEVMLGAVVFGHEQMQAVINAINEFAADVGTKPWNWTAPAVNEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +K+ ++ ++ +AY+I K +R T I + +I + + D I + L
Sbjct: 241 LKAKVAELATAELGEAYRITEKAVRYETIGAIKARVVEQVIAS-GVEEDAKKIGEEFHSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +++ RID R IR +S+ TG+LPR HGS+LFTRG+TQA+VVATLGT R
Sbjct: 300 ESRIVRGRVVRGEPRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L G D FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ ++
Sbjct: 360 DAQNIDELTGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A+ +IL+ M
Sbjct: 480 ILGDEDHLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+++D+G + IA+
Sbjct: 540 IQAPRAEISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + +EA RRIE +T +++ ++Y G V+RL DFGA + IL GKDGL+HISQI+ RV
Sbjct: 600 DGDAAKEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQ 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+LK V+VKVL +D +GR++LS+
Sbjct: 660 NVADYLKIGDVVKVKVLEVDRQGRVRLSI 688
>gi|415776329|ref|ZP_11487913.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431]
gi|425121465|ref|ZP_18523151.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0569]
gi|425290304|ref|ZP_18681130.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3006]
gi|315617247|gb|EFU97856.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3431]
gi|408210930|gb|EKI35486.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3006]
gi|408566608|gb|EKK42675.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 8.0569]
Length = 690
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/668 (55%), Positives = 514/668 (76%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAGRIPGSFF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ ++ I INELV+ G+ + +W P ++ L +++ ++E ++ AY+I +
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 241
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I + ++L+ E+ T+D N++ IL+ +E ++R ++L RID R
Sbjct: 242 KQERYAQVDVIKSETIATLL-AEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREK 300
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+RD Q +D LMGE TD+F+ HYN
Sbjct: 301 DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYN 360
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +KF Y++R+VSEITESNGSSSMA
Sbjct: 361 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMA 420
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +G
Sbjct: 421 SVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG 480
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
I+ALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIKI+
Sbjct: 481 ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN 540
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +++
Sbjct: 541 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEV 600
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D
Sbjct: 601 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 660
Query: 746 RGRIKLSM 753
+GRI+LS+
Sbjct: 661 QGRIRLSI 668
>gi|421781345|ref|ZP_16217812.1| polyribonucleotide nucleotidyltransferase [Serratia plymuthica A30]
gi|407756554|gb|EKF66670.1| polyribonucleotide nucleotidyltransferase [Serratia plymuthica A30]
Length = 707
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/690 (54%), Positives = 512/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ +I I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY I KQ R I + +L+ + T+D ++I IL
Sbjct: 241 ALHARVAELAESRLGDAYHITEKQERYAQVDAIKSSVVEALLAQDE-TLDASEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L ++P
Sbjct: 360 RDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|424589892|ref|ZP_18029339.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1037(10)]
gi|408036066|gb|EKG72513.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1037(10)]
Length = 708
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R + IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIQAISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|117919484|ref|YP_868676.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. ANA-3]
gi|187611298|sp|A0KU01.1|PNP_SHESA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117611816|gb|ABK47270.1| 3' exoribonuclease [Shewanella sp. ANA-3]
Length = 699
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 516/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYI+G+Y+LNPT QL+ S L+L+VAG
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLESSQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ LPE+++L ++++GH++ ++ I AI E G+ NW V ++
Sbjct: 181 TESAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L++++ ++E + +AYQI+ KQ R + K + N +D+ +++ +L L
Sbjct: 241 LVAQVKELAEDGLAQAYQIQVKQDR-YAQVAVVKAAAKEALLAANPDVDLREVDGLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + +R +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGDATREAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVTVKVMEVDRQGRVRLSI 688
>gi|262191202|ref|ZP_06049401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
5369-93]
gi|262032904|gb|EEY51443.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
5369-93]
Length = 708
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E+Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTESQEVQVKVLEIDRQGRVRLSM 690
>gi|425065982|ref|ZP_18469102.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida P1059]
gi|404382522|gb|EJZ78982.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida P1059]
Length = 751
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/697 (55%), Positives = 508/697 (72%), Gaps = 2/697 (0%)
Query: 59 MKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
K N L N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +
Sbjct: 32 FKRNILVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQD 91
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQIV
Sbjct: 92 FFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVA 151
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPT + K+S L
Sbjct: 152 TVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRL 211
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGT+KA++ VESE+ L E+ +L A++FGH++ ++ I+AI E G+ + +W
Sbjct: 212 DLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFSAEAGKPRWDWVA 271
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIND-- 356
+ LI K+ I+E ++ +AY+I KQ R I D+ + + DI++
Sbjct: 272 PEPNTALIEKVKAIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGK 331
Query: 357 INCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALV 416
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 332 IVDIFTALESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALA 391
Query: 417 VATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALL 476
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 392 VATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVA 451
Query: 477 PVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDG 536
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 452 AVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKED 511
Query: 537 EKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSY 596
EK V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +
Sbjct: 512 EKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLH 571
Query: 597 ILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE 656
IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+
Sbjct: 572 ILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDD 631
Query: 657 GIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHIS 716
G + IA+ + S +E RIE +T V+ G VY G V RL DFGA + I+ K+GL+HIS
Sbjct: 632 GTVKIAAVDGNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHIS 691
Query: 717 QISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
QI+ +RV ++D+L Q+V VKV+ ID +GRI+L+M
Sbjct: 692 QIAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTM 728
>gi|386706431|ref|YP_006170278.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli P12b]
gi|383104599|gb|AFG42108.1| Polynucleotide phosphorylase/polyadenylase [Escherichia coli P12b]
Length = 689
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/668 (55%), Positives = 514/668 (76%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAGRIPGSFF+REG
Sbjct: 1 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 60
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 61 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 120
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 121 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQML 180
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ ++ I INELV+ G+ + +W P ++ L +++ ++E ++ AY+I +
Sbjct: 181 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 240
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I + ++L+ E+ T+D N++ IL+ +E ++R ++L RID R
Sbjct: 241 KQERYAQVDVIKSETIATLL-AEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREK 299
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+RD Q +D LMGE TD+F+ HYN
Sbjct: 300 DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYN 359
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +KF Y++R+VSEITESNGSSSMA
Sbjct: 360 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMA 419
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +G
Sbjct: 420 SVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG 479
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
I+ALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIKI+
Sbjct: 480 ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN 539
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +++
Sbjct: 540 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEV 599
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D
Sbjct: 600 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 659
Query: 746 RGRIKLSM 753
+GRI+LS+
Sbjct: 660 QGRIRLSI 667
>gi|417674073|ref|ZP_12323510.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
155-74]
gi|419366932|ref|ZP_13908084.1| pnp [Escherichia coli DEC13E]
gi|419382574|ref|ZP_13923518.1| pnp [Escherichia coli DEC14C]
gi|424092186|ref|ZP_17828116.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1996]
gi|424136317|ref|ZP_17868765.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA10]
gi|425099842|ref|ZP_18502571.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.4870]
gi|425176049|ref|ZP_18574165.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA504]
gi|425182091|ref|ZP_18579782.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1999]
gi|425201599|ref|ZP_18597803.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE037]
gi|425207984|ref|ZP_18603777.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK2001]
gi|425344129|ref|ZP_18731016.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1848]
gi|425374735|ref|ZP_18759373.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1864]
gi|425424040|ref|ZP_18805198.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 0.1288]
gi|429069095|ref|ZP_19132547.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0672]
gi|332086383|gb|EGI91530.1| polyribonucleotide nucleotidyltransferase [Shigella dysenteriae
155-74]
gi|378210466|gb|EHX70820.1| pnp [Escherichia coli DEC13E]
gi|378226136|gb|EHX86329.1| pnp [Escherichia coli DEC14C]
gi|390638952|gb|EIN18440.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1996]
gi|390693916|gb|EIN68529.1| polyribonucleotide nucleotidyltransferase [Escherichia coli PA10]
gi|408089599|gb|EKH22903.1| polyribonucleotide nucleotidyltransferase [Escherichia coli FDA504]
gi|408095806|gb|EKH28770.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1999]
gi|408113501|gb|EKH45091.1| polyribonucleotide nucleotidyltransferase [Escherichia coli NE037]
gi|408119571|gb|EKH50631.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK2001]
gi|408257235|gb|EKI78558.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1848]
gi|408289641|gb|EKJ08397.1| polyribonucleotide nucleotidyltransferase [Escherichia coli EC1864]
gi|408341772|gb|EKJ56210.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 0.1288]
gi|408547204|gb|EKK24602.1| polyribonucleotide nucleotidyltransferase [Escherichia coli 3.4870]
gi|427317269|gb|EKW79175.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
99.0672]
Length = 690
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/668 (55%), Positives = 514/668 (76%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAGRIPGSFF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ ++ I INELV+ G+ + +W P ++ L +++ ++E ++ AY+I +
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 241
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I + ++L+ E+ T+D N++ IL+ +E ++R ++L RID R
Sbjct: 242 KQERYAQVDVIKSETIATLL-AEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREK 300
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+RD Q +D LMGE TD+F+ HYN
Sbjct: 301 DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYN 360
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +KF Y++R+VSEITESNGSSSMA
Sbjct: 361 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMA 420
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +G
Sbjct: 421 SVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG 480
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
I+ALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIKI+
Sbjct: 481 ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN 540
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +++
Sbjct: 541 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEV 600
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D
Sbjct: 601 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 660
Query: 746 RGRIKLSM 753
+GRI+LS+
Sbjct: 661 QGRIRLSI 668
>gi|417823768|ref|ZP_12470360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE48]
gi|340048397|gb|EGR09319.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE48]
Length = 709
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+++LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQFVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS D+ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISADVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|182680754|ref|YP_001828914.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M23]
gi|386084271|ref|YP_006000553.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
subsp. fastidiosa GB514]
gi|187611441|sp|Q87EV0.2|PNP_XYLFT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704834|sp|B2I730.1|PNP_XYLF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|182630864|gb|ACB91640.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M23]
gi|307579218|gb|ADN63187.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 700
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/692 (54%), Positives = 512/692 (73%), Gaps = 9/692 (1%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L TVV+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPGSFFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S++P+
Sbjct: 63 QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI ++IG S ALS++ +PF GP+G AKVGY DG+YILNPT +LKKS L+L+VAGT
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+IFGH +M+ I I+ L + +W P K+ L+
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEACTQPSDWVPPAKNDALV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-----IDNENLTIDINDINCIL 361
+ + ++ A+ I++K R + D+ L ++ NL + +
Sbjct: 243 IALKKVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFG--- 299
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+LE + +R +LD +RID R + +RPI+++ G+LPR HGS LFTRG+TQA+VV TLG
Sbjct: 300 -ELEYRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR GVPKRREIGHGRLA+R +L V+P+
Sbjct: 359 TARDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+
Sbjct: 419 LDEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ELS +APRL+TIKI P KIRDVIGKGGSTI+ +T+ETGTQIDI D+G I I
Sbjct: 539 DKALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKETGTQIDIQDDGTIVI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS N+ + +EAKRRIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+
Sbjct: 599 ASVNNAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D LKE VRVKVL +D +GRI+LS+
Sbjct: 659 RVERVGDKLKEGDVVRVKVLEVDKQGRIRLSI 690
>gi|114046602|ref|YP_737152.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-7]
gi|123131654|sp|Q0HXR0.1|PNP_SHESR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113888044|gb|ABI42095.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-7]
Length = 699
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 515/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYI+G+Y+LNPT QL S L+L+VAG
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ LPE+++L ++++GH++ ++ I AI E G+ NW V ++
Sbjct: 181 TEGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L++++ ++E + +AYQI+ KQ R + K + N +D+ +++ +L L
Sbjct: 241 LVAQVKELAEAGLAQAYQIQVKQER-YAQVAVVKAAAKEALLAANPEVDLREVDGLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + +R +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVTVKVMEVDRQGRVRLSI 688
>gi|188991049|ref|YP_001903059.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. B100]
gi|167732809|emb|CAP51003.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
pv. campestris]
Length = 735
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 510/690 (73%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 34 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDY 93
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 94 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 153
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 154 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTA 213
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ IN INEL G K W K+ LI
Sbjct: 214 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKNTALI 273
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ A+Q+++K R I KD+ SL + +E + +++ +
Sbjct: 274 SALKEAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSS--AELSKEFGE 331
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +R +L+ +RID R ++ +RPIS++ G+LPRTHGS+LFTRG+TQA+VV TLGT+
Sbjct: 332 LEYHTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTA 391
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+
Sbjct: 392 RDGQVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE 451
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ ++ V+LS
Sbjct: 452 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS 511
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 512 DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSK 571
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 572 ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS 631
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 632 VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV 691
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 692 EKVGDKLKEGDLVRVKVLEVDKQGRIRLSI 721
>gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
Length = 711
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/686 (54%), Positives = 505/686 (73%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K +YG + +E G IARQAT +V+V +T +L T V K+ +FFPLTV+Y
Sbjct: 20 IRKVIEYGDRSLVLETGCIARQATGAVVVHYGETAVLVTAVGVKEAIEGRDFFPLTVNYQ 79
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAG+IPG FFKREG+P+E+ET+ SRLIDRP+RPLFP+G+ NE+Q++ V+S + +
Sbjct: 80 ERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVISSDGEN 139
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI S+IG S AL++S +PF P+ A+VGYIDG+Y+LNPT Q++KS LDL+VAGTEK
Sbjct: 140 DPDIPSLIGASAALALSGIPFTTPIAAARVGYIDGRYVLNPTLSQMEKSALDLVVAGTEK 199
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+++LPE+I+L ++IFGH++M+ I AI EL + G+ +W V+D+ L+S
Sbjct: 200 AVLMVESEARELPEEIMLGSVIFGHQEMQAVIQAIRELAEEAGKAPWDWSTPVEDEDLMS 259
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+ + E ++++AYQ+++KQ R + I L+ E+ + + LE +
Sbjct: 260 AVWDCGEARLQEAYQVRSKQDRQASLAEARSFIVERLVPEEDPQWSKEQVLEAVSALEKR 319
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R+QIL G RID R +RPI+I TG+LPR HGS+LFTRG+TQ+LV TLGT RD Q
Sbjct: 320 LVREQILAGGERIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTLGTERDAQ 379
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDA+ GE + FMLHYN PP+ G+ G +G PKRREIGHGRLAKR+L V+P+ F Y
Sbjct: 380 VIDAIEGERRERFMLHYNFPPYCVGETGFVGAPKRREIGHGRLAKRSLNAVVPDEESFPY 439
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
IR+VSEITESNGSSSMA+VCG L+L+DAGVPI+E VAGIAMGLIK+ ++ +LSDILG
Sbjct: 440 VIRVVSEITESNGSSSMATVCGTSLSLMDAGVPITEPVAGIAMGLIKERDQFAVLSDILG 499
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A++G +IL+KM +
Sbjct: 500 DEDHLGDMDFKVAGTGKGVTALQMDIKIDGITEEIMRTALSQAREGRLHILQKMNEVISA 559
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S++APR+I KI+P KIRDVIGKGG+TIR LTEETGT IDI D+G + I S +
Sbjct: 560 PRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDITDDGTVKIFSSDKA 619
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
GQEA+RR+E++ V++GK+Y G V RL DFGA + IL GKDGLLHISQIS +RV ++
Sbjct: 620 DGQEARRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISDERVKNVS 679
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E +RVKVL +D +GR++LS+
Sbjct: 680 DKLSEGDIIRVKVLEVDKQGRVRLSI 705
>gi|237808986|ref|YP_002893426.1| polynucleotide phosphorylase/polyadenylase [Tolumonas auensis DSM
9187]
gi|259534170|sp|C4L8X0.1|PNP_TOLAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|237501247|gb|ACQ93840.1| Polyribonucleotide nucleotidyltransferase [Tolumonas auensis DSM
9187]
Length = 720
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F YG + ++IE G +ARQAT++V+VS++DT +L TVV K+ +FFPLTV
Sbjct: 1 MNPIVKTFPYGQHTVTIETGVMARQATAAVMVSMDDTAVLVTVVGKKEAVEGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FFKREG+PSE ET+ +RLIDRPIRPLFPEG+LNE+Q+V V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFLNEVQVVATVMSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VGYI+ +YILNP+ +L++S LDL+VAG
Sbjct: 121 PAVSPDIVAMIGTSAALAISGIPFNGPIGAARVGYINDQYILNPSVVELQESKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ LPE+++L A+++GH++++ I A+NE VG K NW + T
Sbjct: 181 TAAAVLMVESEAAILPEEVMLGAVVYGHDQLQTVIKAVNEFAAEVGTKPWNWVAPAANVT 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +KI ++ I +AY+I K +R + + I + ++ + T D ++ + ++L
Sbjct: 241 LKAKIAELAVAAIGEAYRITEKAVRYDAISALKQRIVAEIVAADE-TQDAGEVADLFHEL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES ++R +IL RID R IR +S+ TG+LPR HGS+LFTRG+TQALV TLGT R
Sbjct: 300 ESDVVRGRILRGEPRIDGRDPQMIRALSVGTGVLPRVHGSALFTRGETQALVACTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID + GE TD FMLHYN PP+ G+ G +G PKRREIGHGRLA+R + V+P+ +
Sbjct: 360 DAQTIDEITGERTDRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLARRGVSAVIPSQAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDSFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGVTALQMDIKIEGITKEIMQIALKQARDARLHILTVMDKA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I++ D+G + IA+
Sbjct: 540 IGVARDDISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIELEDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + QEA RRI+ LT V+IG++Y G V RL +FGA + IL GKDGL+HISQI+ +RV
Sbjct: 600 SGEAAQEAIRRIQALTADVEIGRIYEGKVTRLAEFGAFVNILPGKDGLVHISQITDERVK 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+LK VR KVL +D +GRI+LS+
Sbjct: 660 DVSDYLKVGDMVRTKVLEVDRQGRIRLSI 688
>gi|424658516|ref|ZP_18095773.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-16]
gi|408055000|gb|EKG89954.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-16]
Length = 709
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+++LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQFVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS D+ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISADVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|261253862|ref|ZP_05946435.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|417953537|ref|ZP_12596582.1| polynucleotide phosphorylase/polyadenylase [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|260937253|gb|EEX93242.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|342817138|gb|EGU52025.1| polynucleotide phosphorylase/polyadenylase [Vibrio orientalis CIP
102891 = ATCC 33934]
Length = 710
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PD+ ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ ++ I+AINE V +W ++
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVISAINEFAAEVATPAWDWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALVAKIAELAETKLVEAYQITEKMARYDRIHTIAAEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + QEA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGTAAQEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|197287234|ref|YP_002153106.1| polynucleotide phosphorylase/polyadenylase [Proteus mirabilis
HI4320]
gi|227357072|ref|ZP_03841442.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
29906]
gi|425070182|ref|ZP_18473296.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW6]
gi|226702677|sp|B4F2C3.1|PNP_PROMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|194684721|emb|CAR46710.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis
HI4320]
gi|227162764|gb|EEI47727.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
29906]
gi|404595698|gb|EKA96234.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW6]
Length = 709
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N ++ F+YG + +++E G +ARQAT++V+V ++ T + TVV+ K +FFPLT
Sbjct: 1 MLNPTVRKFQYGQHTVTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E++YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG+LNEIQ+V V+SV
Sbjct: 61 VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VG+IDG+Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L E+ +L A++FGHE+ ++ I IN LV VG++K +W P ++
Sbjct: 181 GTAGAVLMVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEVGKEKWDWAPEPINQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L +I +++ +I AY+I KQ R I ++ S+L+ E+ ++D +I I
Sbjct: 241 SLHDRIAQLAQTRIGDAYRITEKQERYEQIDAIRDEVISTLL-AEDESLDEGEIIEIFSG 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE KI+R ++L RID R + +R + IRTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKKIVRARVLAGEPRIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID +MGE TD+F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQTIDDIMGEHTDTFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPTIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI E VAGIAMGL+K+GE V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKEGENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NG++ALQMDIKI GIT +I+Q+AL +AK +IL M++
Sbjct: 480 DILGDEDHLGDMDFKVAGSRNGVSALQMDIKIEGITREIMQVALNQAKSARLHILGVMES 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S+FAPR+ TIKI+ KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISQPRAEISEFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ ++A RIE++T V++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TSGEQAKQAIARIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L Q+V VKVL ID +GRI+LSM
Sbjct: 660 EKVSDYLTMGQEVPVKVLEIDRQGRIRLSM 689
>gi|260775173|ref|ZP_05884071.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
gi|260608874|gb|EEX35036.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
Length = 710
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 514/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A+++GH++ ++ INAINE V +W ++
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
TL++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TTLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|420322133|ref|ZP_14823957.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
2850-71]
gi|391246542|gb|EIQ05803.1| polyribonucleotide nucleotidyltransferase [Shigella flexneri
2850-71]
Length = 690
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/668 (55%), Positives = 513/668 (76%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAGRIPGSFF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ ++ I INELV+ G+ + +W P ++ L +++ ++E ++ AY+I +
Sbjct: 182 GAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITD 241
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I + ++L+ E+ T+D N++ IL+ +E ++R ++L RID R
Sbjct: 242 KQERYAQVDVIKSETIATLL-AEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREK 300
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+RD Q +D LMGE TD+F+ HYN
Sbjct: 301 DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYN 360
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +KF Y++R+VSEITESNGSSSMA
Sbjct: 361 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMA 420
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ G
Sbjct: 421 SVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSREG 480
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
I+ALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIKI+
Sbjct: 481 ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN 540
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +++
Sbjct: 541 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEV 600
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D
Sbjct: 601 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 660
Query: 746 RGRIKLSM 753
+GRI+LS+
Sbjct: 661 QGRIRLSI 668
>gi|153826503|ref|ZP_01979170.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
gi|254226546|ref|ZP_04920129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
gi|254291886|ref|ZP_04962668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
AM-19226]
gi|125620950|gb|EAZ49301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
gi|149739683|gb|EDM53890.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
gi|150422172|gb|EDN14137.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
AM-19226]
Length = 708
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|262163939|ref|ZP_06031678.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
gi|262172277|ref|ZP_06039955.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
gi|261893353|gb|EEY39339.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
gi|262027467|gb|EEY46133.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
Length = 709
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + INAINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVSAALL-AENEALDAKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|294624709|ref|ZP_06703376.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665176|ref|ZP_06730476.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600982|gb|EFF45052.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605040|gb|EFF48391.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 704
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/688 (55%), Positives = 501/688 (72%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ IN INEL G K +W K+ +I
Sbjct: 183 NAVLMVESEADLLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ +L + D+ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|422921872|ref|ZP_16955077.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BJG-01]
gi|341647489|gb|EGS71567.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BJG-01]
Length = 709
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|88812956|ref|ZP_01128199.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
Nb-231]
gi|88789734|gb|EAR20858.1| Polyribonucleotide nucleotidyltransferase [Nitrococcus mobilis
Nb-231]
Length = 700
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/686 (55%), Positives = 503/686 (73%), Gaps = 2/686 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
K+F+YG + +++E G IARQA+ +V+V++ DTV+L TVV KD +F PLTV+Y E+
Sbjct: 6 KAFQYGDHTVTLETGRIARQASGAVMVNMSDTVVLVTVVGKKDQGEPRDFLPLTVNYQER 65
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YAAG+IPG FFKREG+PSE+ET++SRLIDRP+RPLFP G+ NE+QIV V+S+N ++D
Sbjct: 66 TYAAGKIPGGFFKREGRPSEKETLVSRLIDRPVRPLFPAGFTNEVQIVATVISMNNEVDA 125
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI ++IG S AL++S +PF PLG +VGY G ++LNPT QL+ S LDL+VAGT A+
Sbjct: 126 DIPAMIGASAALAVSGIPFDSPLGAGRVGYHKGAFVLNPTFSQLESSDLDLVVAGTADAV 185
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
+ VESE+ L E +L+A+IFGHE+M+ I AINEL Q G+ + +W P+ KD+ L +
Sbjct: 186 LMVESEANCLSEQTMLDAVIFGHEQMQTVIAAINELAQEAGKPRWDWAPVEKDQRLAQAL 245
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIND--INCILYDLESK 367
I+E + +AY++ KQ R + +++ + L E T ++ I LE K
Sbjct: 246 TEIAERPLGEAYRVAEKQERLDRVSAVREEVMTRLTLGEEPTEGWSEREIGNAFKGLEKK 305
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R IL RID R +RPISI LPRTHGS++FTRG+TQA+VV TLGT RD Q
Sbjct: 306 IVRGSILRGEPRIDGRDNKTVRPISIEVATLPRTHGSAIFTRGETQAIVVTTLGTGRDAQ 365
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDA+ GE + FMLHYN PP++ G+ G +GVPKRREIGHGRLAKR + V+P+ + Y
Sbjct: 366 IIDAIEGERKEPFMLHYNFPPYSVGETGFMGVPKRREIGHGRLAKRGIQAVMPSQEECPY 425
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
IR+VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGLIK+ + +L+DILG
Sbjct: 426 VIRVVSEITESNGSSSMATVCGTSLALMDAGVPIKAPVAGIAMGLIKEESEFAVLTDILG 485
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT I+++AL +A+ G +IL KM + K
Sbjct: 486 DEDHLGDMDFKVAGTEEGVTALQMDIKINGITRQIMEVALEQARTGRLHILSKMNAVIAK 545
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S +APRL+T+KIDP KIRDVIGKGG+TIR LTEETGT IDI D+G +TIAS +
Sbjct: 546 PRGEMSAYAPRLLTMKIDPEKIRDVIGKGGATIRQLTEETGTTIDIVDDGTVTIASVDKA 605
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+G+EA+RRIE LT V++G++Y G V +L DFGA + IL G+DGL+HISQIS++RV ++
Sbjct: 606 AGEEARRRIELLTADVEVGRIYEGRVTKLMDFGAFVNILPGRDGLVHISQISNRRVESVS 665
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
+ L E Q+VRVKVL +D +GRI+LS+
Sbjct: 666 EELAEGQRVRVKVLEVDRQGRIRLSI 691
>gi|419835567|ref|ZP_14359012.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46B1]
gi|421341996|ref|ZP_15792403.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43B1]
gi|421353455|ref|ZP_15803788.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-45]
gi|422306054|ref|ZP_16393240.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1035(8)]
gi|423733930|ref|ZP_17707146.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-41B1]
gi|424008215|ref|ZP_17751165.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-44C1]
gi|259156595|gb|ACV96538.1| polyribonucleotide nucleotidyltransferase [Vibrio fluvialis Ind1]
gi|395945499|gb|EJH56164.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43B1]
gi|395954802|gb|EJH65411.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-45]
gi|408627437|gb|EKL00245.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1035(8)]
gi|408631700|gb|EKL04228.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-41B1]
gi|408858980|gb|EKL98650.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46B1]
gi|408866085|gb|EKM05474.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-44C1]
Length = 708
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISSEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|730350|sp|P41121.1|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=CAP87K; AltName: Full=Polynucleotide phosphorylase;
Short=PNPase
gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens]
Length = 709
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/690 (53%), Positives = 518/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + ++IE G +ARQAT++V+V+++DT + TVV K + +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+P E ET+++RLIDRP+RPLFPEG+LNE++IV V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVRIVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT+++LK S LDL+V+
Sbjct: 121 NPQINPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L E+ +L A++FGH++ ++ I+ IN L G++K +W P ++
Sbjct: 181 GTAGAVLMVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALAAEAGKEKWDWVPEPVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ AY+I KQ R I ++ ++L++ + T++ +I+ IL
Sbjct: 241 ALHDRVAELAESRLGDAYRITEKQERYAQVDAIKDEVTAALLEQDE-TLEEAEIHEILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKNVVRSRVLSGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RDAQIIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSCEGISALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ ++++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AITTPRDDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAISRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L+ Q+ VKVL ID +GR++LS+
Sbjct: 660 EKVADYLQVGQETSVKVLEIDRQGRVRLSI 689
>gi|113969375|ref|YP_733168.1| polynucleotide phosphorylase/polyadenylase [Shewanella sp. MR-4]
gi|123130662|sp|Q0HLF6.1|PNP_SHESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113884059|gb|ABI38111.1| Polyribonucleotide nucleotidyltransferase [Shewanella sp. MR-4]
Length = 699
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 516/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYI+G+Y+LNPT QL S L+L+VAG
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ LPE+++L ++++GH++ ++ I AI E G+ NW V ++
Sbjct: 181 TEGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L++++ ++E + +AYQI+ KQ R + K + N +D+ +++ +L L
Sbjct: 241 LVAQVKELAEVGLAQAYQIQVKQER-YAQVAVVKAAAKEALLAANPEVDLREVDGLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + +R +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVTVKVMEVDRQGRVRLSI 688
>gi|323499449|ref|ZP_08104421.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
21326]
gi|323315505|gb|EGA68544.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
21326]
Length = 706
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/691 (54%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ + INAINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVINAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
TL++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TTLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|325921391|ref|ZP_08183248.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas gardneri ATCC 19865]
gi|325548149|gb|EGD19146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas gardneri ATCC 19865]
Length = 704
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/690 (55%), Positives = 508/690 (73%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTISELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +++ IN INEL G K W K+ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHRELQKVINVINELTVEAGTKPSTWVAPAKNTALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
+ + ++ A+Q+++K R I KD+ SL + +E + +++ +
Sbjct: 243 NALKEAVGAQLSGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSS--AELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +R +L+ +RID R ++ +RPIS++ GILPRTHGS+LFTRG+TQA+VV TLGT+
Sbjct: 301 LEYHTMRDSVLETKVRIDGRALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ ++ V+LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G YIL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLYILGEMSK 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 ALTTPRLELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 601 VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 661 EKVGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|425074006|ref|ZP_18477111.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW4]
gi|404594417|gb|EKA94999.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW4]
Length = 709
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 522/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N ++ F+YG + +++E G +ARQAT++V+V ++ T + TVV+ K +FFPLT
Sbjct: 1 MLNPTVRKFQYGQHTVTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E++YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG+LNEIQ+V V+SV
Sbjct: 61 VNYQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VG+IDG+Y+LNPT ++LK S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L E+ +L A++FGHE+ ++ I IN LV VG++K +W P ++
Sbjct: 181 GTAGAVLMVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEVGKEKWDWAPEPINQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
+L +I +++ +I AY+I KQ R I ++ S+L+ E+ ++D +I I
Sbjct: 241 SLHDRIAQLAQTRIGDAYRITEKQERYEQIDAIRDEVISTLL-AEDESLDEGEIIEIFSG 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE KI+R ++L RID R + +R + IRTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKKIVRARVLAGEPRIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID +MGE TD+F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQTIDDIMGEHTDTFLLHYNFPPYSVGETGIMGSPKRREIGHGRLAKRGVLAVMPTIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI E VAGIAMGL+K+GE V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKEGENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NG++ALQMDIKI GIT +I+Q+AL +AK +IL M++
Sbjct: 480 DILGDEDHLGDMDFKVAGSRNGVSALQMDIKIEGITREIMQVALNQAKSARLHILGVMES 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S+FAPR+ TIKI+ KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISQPRAEISEFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ ++A RIE++T V++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TSGEQAKQAIARIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L Q+V VKVL ID +GRI+LSM
Sbjct: 660 EKVSDYLTMGQEVPVKVLEIDRQGRIRLSM 689
>gi|297580773|ref|ZP_06942699.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
gi|297535189|gb|EFH74024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
Length = 709
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|260771169|ref|ZP_05880096.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
102972]
gi|260613766|gb|EEX38958.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
102972]
Length = 711
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE++ L E+ +L+A++FGH++ + I AINE V +W ++
Sbjct: 181 AGTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +KI ++E K+ +AYQI K R IS ++ ++L+ EN ++ +I+ I +
Sbjct: 241 TALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLL-AENEELNPKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSI 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + Q+A RRIE++T V++GK+YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATSGEQAQDAIRRIEQITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++D L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 IEKVSDVLSEGQEVQVKVLEIDRQGRVRLSM 690
>gi|422909161|ref|ZP_16943813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-09]
gi|341635751|gb|EGS60457.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-09]
Length = 709
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+++LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQFVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS D+ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISADVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|429462611|ref|YP_007184074.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|429338125|gb|AFZ82548.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
Length = 685
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/675 (56%), Positives = 516/675 (76%), Gaps = 3/675 (0%)
Query: 81 IEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSF 140
+E GEIARQ++ +VL S+ DTVILATVV ++ FFPLTVDYIEK YA G+IPG F
Sbjct: 3 LETGEIARQSSGAVLASMGDTVILATVVGSQEIKEGQKFFPLTVDYIEKTYAVGKIPGGF 62
Query: 141 FKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTA 200
FKREGK SE+E + +RLIDRP+RPLFP+ + NE+QI+++VLSV+P+IDPDI SIIG S A
Sbjct: 63 FKREGKSSEKEILTARLIDRPLRPLFPKQFYNEVQIIIHVLSVDPEIDPDIISIIGSSAA 122
Query: 201 LSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLP 260
L++S +PF GP+G +VG+I+ +++NPT QL+KS LDL++AG+ A++ VES +++L
Sbjct: 123 LALSGIPFNGPIGAIRVGFIENDFVINPTKSQLEKSSLDLVLAGSSDAVLMVESTARELS 182
Query: 261 EDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKA 320
E +L AI FGH++M++ I+ I ELV+ G+ + +W P D+ L+ I S K+ A
Sbjct: 183 ESTMLEAIDFGHQQMQVVIDNIIELVKEAGKPEWDWKPKPCDQFLVDIINEFSNEKLVSA 242
Query: 321 YQIKNKQIRDLTFKNISKDIYSSLID---NENLTIDINDINCILYDLESKIIRKQILDKG 377
Y IK KQ R L + I +I + + D N ++ + I+ I+++LESKI+R +IL
Sbjct: 243 YNIKEKQDRSLVLREIRLEIKNFVKDRVGNSDVIPLDSTIDDIIFNLESKIVRNRILSGE 302
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFT 437
RID R +RPI IR G+LPR HGS+LFTRG+TQALV+ TLGT +DEQ ID+L+GE+
Sbjct: 303 PRIDGRNTRTVRPIDIRLGVLPRAHGSALFTRGETQALVIVTLGTKQDEQIIDSLLGEYR 362
Query: 438 DSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITE 497
D F+ HYNMPPFATG+IGRIG+PKRRE+GHG LA+RAL P+LP+ F+Y+ RLVSEITE
Sbjct: 363 DKFIFHYNMPPFATGEIGRIGIPKRREVGHGYLARRALTPMLPDPKDFHYTTRLVSEITE 422
Query: 498 SNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDF 557
SNGSSSMASVCGG LA++DAGVPIS+HVAG+AMGLI + +K IL+DILGDED GDMDF
Sbjct: 423 SNGSSSMASVCGGSLAMMDAGVPISKHVAGVAMGLILEDDKFAILTDILGDEDHLGDMDF 482
Query: 558 KVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAP 617
KVAGT +GITALQMDIKI GIT DI+ IAL +A++G ILEKMK + + ELS ++P
Sbjct: 483 KVAGTSDGITALQMDIKIQGITKDIMGIALLQAQEGRLSILEKMKKAINISREELSSYSP 542
Query: 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIE 677
++ITIKI+P KIRDVIGKGG+TIR +TEET TQIDI+++G++++A ++ + Q A ++I
Sbjct: 543 KIITIKINPDKIRDVIGKGGATIRAITEETATQIDISEDGVVSVAGVDNNNVQNAYKKIL 602
Query: 678 KLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVR 737
+LT V++G VY G +LR+ DFGAI+++ GKDGLLHIS+IS+ R+ I+D L Q+++
Sbjct: 603 ELTADVEVGSVYEGKILRILDFGAIVQLFPGKDGLLHISEISNNRIQNISDVLSIGQRIK 662
Query: 738 VKVLGIDDRGRIKLS 752
VKV+ DD+GR +LS
Sbjct: 663 VKVIESDDKGRFRLS 677
>gi|448240208|ref|YP_007404261.1| polynucleotide phosphorylase/polyadenylase [Serratia marcescens
WW4]
gi|445210572|gb|AGE16242.1| polynucleotide phosphorylase/polyadenylase [Serratia marcescens
WW4]
gi|453064994|gb|EMF05958.1| polynucleotide phosphorylase/polyadenylase [Serratia marcescens
VGH107]
Length = 705
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/690 (53%), Positives = 512/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTT++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGH++ ++ I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADVLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWQAPAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY I KQ R I + +L+ + T+D +I IL +
Sbjct: 241 ALHARVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLAQDE-TLDAGEIQDILGN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L ++P
Sbjct: 360 RDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRGDISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|418464891|ref|ZP_13035830.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756846|gb|EHK91003.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 745
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/698 (54%), Positives = 512/698 (73%), Gaps = 1/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
L + K + N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD
Sbjct: 26 LFIFKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKE 85
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ
Sbjct: 86 GQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQ 145
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
+V V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+G+++LNPT + K+
Sbjct: 146 VVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQ 205
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAGT+KA++ VESE+ L E+ +L A+++GH++ ++ I AI ELV G+ + +
Sbjct: 206 SRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWD 265
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W + LI+K+ ++E ++ AY+I KQ R I D+ + I E+ I
Sbjct: 266 WVAPEPNTALINKVKALAEARLGDAYRITEKQFRYAQIDAIKADVIAQ-ITAEDEEISEG 324
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 325 KIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 384
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 385 AVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 444
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 445 AAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 504
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+K V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 505 EDKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARM 564
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D
Sbjct: 565 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 624
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ + + Q+ RIE +T V++G +Y G V+RL DFGA + I+ K+GL+HI
Sbjct: 625 DGTVKIAAVDKNAVQDVMARIEDITAEVEVGAIYKGKVIRLADFGAFVAIVGNKEGLVHI 684
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 685 SQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 722
>gi|417319048|ref|ZP_12105606.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
10329]
gi|328474238|gb|EGF45043.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
10329]
Length = 711
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ + +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L A++FGH++ ++ INAINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +KI ++E K+ +AYQI K R I+ ++ +L+ ++ D +I+ I +
Sbjct: 241 TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALL-AQDPEADTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|15640667|ref|NP_230296.1| polynucleotide phosphorylase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121587861|ref|ZP_01677618.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
gi|153802011|ref|ZP_01956597.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
gi|153818691|ref|ZP_01971358.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
8457]
gi|153822539|ref|ZP_01975206.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|227080828|ref|YP_002809379.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae M66-2]
gi|229505731|ref|ZP_04395241.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
330286]
gi|229509236|ref|ZP_04398721.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|229519556|ref|ZP_04408999.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
gi|229608842|ref|YP_002879490.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae
MJ-1236]
gi|254850881|ref|ZP_05240231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
gi|255744136|ref|ZP_05418089.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
gi|262156112|ref|ZP_06029231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
91/1]
gi|298500763|ref|ZP_07010566.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
gi|360034463|ref|YP_004936226.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740506|ref|YP_005332475.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae IEC224]
gi|417812609|ref|ZP_12459269.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-49A2]
gi|417815472|ref|ZP_12462106.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HCUF01]
gi|418331615|ref|ZP_12942557.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-06A1]
gi|418336490|ref|ZP_12945389.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-23A1]
gi|418342872|ref|ZP_12949668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-28A1]
gi|418348033|ref|ZP_12952769.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43A1]
gi|418354475|ref|ZP_12957198.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-61A1]
gi|419825115|ref|ZP_14348621.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1033(6)]
gi|421315882|ref|ZP_15766454.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1032(5)]
gi|421319414|ref|ZP_15769973.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1038(11)]
gi|421323461|ref|ZP_15773990.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1041(14)]
gi|421327866|ref|ZP_15778382.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1042(15)]
gi|421330873|ref|ZP_15781355.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1046(19)]
gi|421334455|ref|ZP_15784924.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1048(21)]
gi|421338353|ref|ZP_15788790.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-20A2]
gi|421346681|ref|ZP_15797064.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46A1]
gi|422890687|ref|ZP_16933100.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-40A1]
gi|422901555|ref|ZP_16936919.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-48A1]
gi|422905773|ref|ZP_16940619.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-70A1]
gi|422912371|ref|ZP_16946898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HFU-02]
gi|422924853|ref|ZP_16957884.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-38A1]
gi|423144174|ref|ZP_17131789.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-19A1]
gi|423148878|ref|ZP_17136238.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-21A1]
gi|423152669|ref|ZP_17139868.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-22A1]
gi|423155451|ref|ZP_17142588.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-32A1]
gi|423159314|ref|ZP_17146287.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-33A2]
gi|423163999|ref|ZP_17150787.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-48B2]
gi|423730125|ref|ZP_17703444.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-17A1]
gi|423748289|ref|ZP_17711523.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-50A2]
gi|423891846|ref|ZP_17725534.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-62A1]
gi|423926620|ref|ZP_17730149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-77A1]
gi|424001177|ref|ZP_17744267.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-17A2]
gi|424005335|ref|ZP_17748320.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-37A1]
gi|424023344|ref|ZP_17763009.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-62B1]
gi|424026147|ref|ZP_17765764.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-69A1]
gi|424585552|ref|ZP_18025146.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1030(3)]
gi|424594169|ref|ZP_18033508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1040(13)]
gi|424600867|ref|ZP_18040024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1047(20)]
gi|424651780|ref|ZP_18089305.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-57A2]
gi|429887878|ref|ZP_19369383.1| Polyribonucleotide nucleotidyltransferase [Vibrio cholerae PS15]
gi|440708851|ref|ZP_20889511.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 4260B]
gi|443502675|ref|ZP_21069665.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-64A1]
gi|443506589|ref|ZP_21073380.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-65A1]
gi|443510695|ref|ZP_21077360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-67A1]
gi|443514255|ref|ZP_21080795.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-68A1]
gi|443518070|ref|ZP_21084488.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-71A1]
gi|443522937|ref|ZP_21089178.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-72A2]
gi|443530555|ref|ZP_21096571.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-7A1]
gi|443534330|ref|ZP_21100243.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-80A1]
gi|443537906|ref|ZP_21103763.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-81A1]
gi|449054130|ref|ZP_21732798.1| Polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1 str.
Inaba G4222]
gi|81545361|sp|Q9KU76.1|PNP_VIBCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782745|sp|C3LSQ2.1|PNP_VIBCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|9655083|gb|AAF93813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121547897|gb|EAX57981.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
gi|124122470|gb|EAY41213.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
gi|126510771|gb|EAZ73365.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
8457]
gi|126519957|gb|EAZ77180.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|227008716|gb|ACP04928.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
gi|229344245|gb|EEO09220.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
gi|229353808|gb|EEO18744.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|229357954|gb|EEO22871.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
330286]
gi|229371497|gb|ACQ61920.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MJ-1236]
gi|254846586|gb|EET25000.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
gi|255738076|gb|EET93468.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
gi|262030148|gb|EEY48793.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
91/1]
gi|297540544|gb|EFH76602.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
gi|340043458|gb|EGR04417.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HCUF01]
gi|340043989|gb|EGR04946.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-49A2]
gi|341625121|gb|EGS50590.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-70A1]
gi|341626210|gb|EGS51612.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-48A1]
gi|341626882|gb|EGS52225.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-40A1]
gi|341640937|gb|EGS65512.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HFU-02]
gi|341648480|gb|EGS72540.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-38A1]
gi|356420642|gb|EHH74161.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-06A1]
gi|356421502|gb|EHH75003.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-21A1]
gi|356426125|gb|EHH79459.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-19A1]
gi|356433271|gb|EHH86464.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-23A1]
gi|356434452|gb|EHH87631.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-22A1]
gi|356437917|gb|EHH90988.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-28A1]
gi|356443118|gb|EHH95950.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-32A1]
gi|356448144|gb|EHI00929.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43A1]
gi|356450151|gb|EHI02883.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-33A2]
gi|356453887|gb|EHI06545.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-61A1]
gi|356456291|gb|EHI08899.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-48B2]
gi|356645617|gb|AET25672.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794016|gb|AFC57487.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae IEC224]
gi|395922623|gb|EJH33439.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1032(5)]
gi|395923306|gb|EJH34118.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1041(14)]
gi|395925739|gb|EJH36536.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1038(11)]
gi|395931600|gb|EJH42345.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1042(15)]
gi|395934726|gb|EJH45464.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1046(19)]
gi|395937564|gb|EJH48278.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1048(21)]
gi|395945305|gb|EJH55974.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-20A2]
gi|395946829|gb|EJH57489.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46A1]
gi|395963763|gb|EJH74020.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-57A2]
gi|395977398|gb|EJH86808.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1030(3)]
gi|395979087|gb|EJH88451.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1047(20)]
gi|408037147|gb|EKG73553.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1040(13)]
gi|408611386|gb|EKK84747.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1033(6)]
gi|408627336|gb|EKL00152.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-17A1]
gi|408640853|gb|EKL12636.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-50A2]
gi|408658689|gb|EKL29755.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-77A1]
gi|408659350|gb|EKL30401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-62A1]
gi|408848350|gb|EKL88399.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-37A1]
gi|408849175|gb|EKL89205.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-17A2]
gi|408873533|gb|EKM12730.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-62B1]
gi|408881306|gb|EKM20210.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-69A1]
gi|429225046|gb|EKY31332.1| Polyribonucleotide nucleotidyltransferase [Vibrio cholerae PS15]
gi|439975592|gb|ELP51704.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 4260B]
gi|443433066|gb|ELS75586.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-64A1]
gi|443436855|gb|ELS82971.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-65A1]
gi|443440417|gb|ELS90105.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-67A1]
gi|443444512|gb|ELS97785.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-68A1]
gi|443448348|gb|ELT04982.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-71A1]
gi|443451123|gb|ELT11386.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-72A2]
gi|443458756|gb|ELT26151.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-7A1]
gi|443462488|gb|ELT33526.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-80A1]
gi|443466731|gb|ELT41388.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-81A1]
gi|448266387|gb|EMB03614.1| Polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1 str.
Inaba G4222]
Length = 709
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|167855122|ref|ZP_02477894.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
29755]
gi|219870717|ref|YP_002475092.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
SH0165]
gi|254782722|sp|B8F492.1|PNP_HAEPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167853757|gb|EDS24999.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
29755]
gi|219690921|gb|ACL32144.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
SH0165]
Length = 709
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/686 (55%), Positives = 507/686 (73%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTVDY
Sbjct: 4 IVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPTT + + S LDL+VAGT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L A++FGHE+ ++ I I E V+ G+ + +W + LI+
Sbjct: 184 AVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E ++ AY+I KQ R I D+ + L E+ TI I I+ LES+
Sbjct: 244 KVKALAEARLGDAYRITEKQARYEQIDAIKADVIAQLT-AEDETISSGKIVDIITALESQ 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +I+ RID R V+ +R + I TG+LPRTHGS+LFTRG+TQAL VATLGT RD Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+ ++
Sbjct: 543 PRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE++ V++ +Y G V R+ DFGA + IL GK+GL+HISQI+ RV +
Sbjct: 603 AAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q V+VKV+ I+ +GRI+L+M
Sbjct: 663 DYLSVGQDVQVKVVEIERQGRIRLTM 688
>gi|28899226|ref|NP_798831.1| polynucleotide phosphorylase/polyadenylase [Vibrio parahaemolyticus
RIMD 2210633]
gi|153838303|ref|ZP_01990970.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ3810]
gi|260362211|ref|ZP_05775195.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
K5030]
gi|260879079|ref|ZP_05891434.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AN-5034]
gi|260897750|ref|ZP_05906246.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
Peru-466]
gi|260900806|ref|ZP_05909201.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ4037]
gi|433658533|ref|YP_007275912.1| Polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
BB22OP]
gi|81727008|sp|Q87M06.1|PNP_VIBPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|28807450|dbj|BAC60715.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
RIMD 2210633]
gi|149748292|gb|EDM59151.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ3810]
gi|308088979|gb|EFO38674.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
Peru-466]
gi|308089536|gb|EFO39231.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AN-5034]
gi|308108195|gb|EFO45735.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
AQ4037]
gi|308111467|gb|EFO49007.1| polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
K5030]
gi|432509221|gb|AGB10738.1| Polyribonucleotide nucleotidyltransferase [Vibrio parahaemolyticus
BB22OP]
Length = 711
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ + +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L A++FGH++ ++ INAINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +KI ++E K+ +AYQI K R I+ ++ +L+ ++ D +I+ I +
Sbjct: 241 TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALL-AQDPEADTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|375130052|ref|YP_004992151.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
11218]
gi|315179225|gb|ADT86139.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
11218]
Length = 711
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE++ L E+ +L+A++FGH++ + I AINE V +W ++
Sbjct: 181 AGTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +KI ++E K+ +AYQI K R IS ++ ++L+ EN ++ +I+ I +
Sbjct: 241 TALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLL-AENEELNPKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSI 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + Q+A RRIE++T V++GK+YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATSGEQAQDAIRRIEQITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++D L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 IEKVSDVLSEGQEVQVKVLEIDRQGRVRLSM 690
>gi|121728394|ref|ZP_01681422.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
gi|147674727|ref|YP_001216141.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O395]
gi|227117022|ref|YP_002818918.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
gi|187611333|sp|A5F913.1|PNP_VIBC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121629328|gb|EAX61760.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
gi|146316610|gb|ABQ21149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
gi|227012472|gb|ACP08682.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
Length = 712
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISSEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|312885115|ref|ZP_07744800.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309367215|gb|EFP94782.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 708
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELESSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+ L E+ +L+A++FGH++ ++ INAINE V +W ++
Sbjct: 181 AGTDSAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ +L+ EN + +I+ I +
Sbjct: 241 TALVTKIAELAETKLVEAYQITEKMARYDRIHEIAGEVNEALL-AENPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + ++P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAIMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ +KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHMMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLSEGQEVQVKVLEIDRQGRVRLSM 690
>gi|52424548|ref|YP_087685.1| polynucleotide phosphorylase/polyadenylase [Mannheimia
succiniciproducens MBEL55E]
gi|81387489|sp|Q65VB0.1|PNP_MANSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52306600|gb|AAU37100.1| Pnp protein [Mannheimia succiniciproducens MBEL55E]
Length = 704
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 511/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + +VV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+LNEIQI+ V+SVN
Sbjct: 61 DYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E V G+ + +W D
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFVAEAGKPRWDWVAPEPDSA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LISK+ I+E+++ AY+I KQ+R I D+ + I E+ + I I L
Sbjct: 241 LISKVKAIAENRLGDAYRITEKQVRYEQIDAIKADVIAQ-ITAEDEEVSEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQ+L V TLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVVTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q +D L GE D+F+ HYN PP++ G+ GR+G PKRREIGHGRLAKR + V+P+ ++
Sbjct: 360 DAQILDELTGERQDTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ +K V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEDDKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S+FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+
Sbjct: 540 ISAPRAEISEFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + + RIE +T V+ G VYTG V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DGNAVKTVMARIEDITAEVEAGAVYTGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVQVKVVEIDRQGRIRLTM 688
>gi|229525300|ref|ZP_04414705.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
albensis VL426]
gi|229338881|gb|EEO03898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
albensis VL426]
Length = 709
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVAIPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|304414101|ref|ZP_07395469.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
insecticola LSR1]
gi|304283315|gb|EFL91711.1| polynucleotide phosphorylase/polyadenylase [Candidatus Regiella
insecticola LSR1]
Length = 698
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 521/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+ F+YG + ++IE G +ARQA S+V+VS++DT + TVV K NFFPLT
Sbjct: 1 MLNPIVHKFQYGQHTVTIETGMMARQANSAVMVSVDDTAVFVTVVGQKQAKPGQNFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E++YAAGRIPG+FF+REG+PSE ET+ISRLIDRPIRPLFP G+LNE+QI+ V+S+
Sbjct: 61 VNYQERSYAAGRIPGNFFRREGRPSEGETLISRLIDRPIRPLFPAGFLNEVQIIATVVSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
N +++PDI ++IG S ALS+S++PF GP+G A+VG+I+ +YILNPTT +L +S LDL+VA
Sbjct: 121 NKEVNPDIVAMIGASAALSLSDIPFNGPIGAARVGFINDQYILNPTTTELVESRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+K L E+ +L A+ FGHE+ +I IN INELV+ G+ K +W P ++
Sbjct: 181 GTNAAVLMVESEAKMLSEEQMLGAVSFGHEQQQIVINNINELVEKAGKAKWDWCPEEVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L + + ++E + AY I KQ R I DI +L+D +N ++ ++ IL
Sbjct: 241 KLYTTVSELAEAPLGDAYCIAEKQERYAKINVIKADITQTLLD-KNEILNAAEVQDILSY 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
E K++R+++L+ RID+RG + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 TEKKLVRRRVLECKPRIDDRGKDTIRSLDMRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L+GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKRALL V+P+ +
Sbjct: 360 RDAQSLDELIGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRALLAVMPSLD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI EHVAGIAMGL+K+G+ V+LS
Sbjct: 420 DCPYTVRIVSEITESNGSSSMASVCGASLALMDAGVPIKEHVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT I++ AL++AK LS+IL+ M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRTGITALQMDIKIEGITEKIMEKALHQAKSALSHILDIMEE 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ K ++++S++APR+ TIKI+P KI+DVIGKGG+ IR LTEET T I+I D+G I IA+
Sbjct: 540 AIKKPRSDISQYAPRIHTIKINPDKIKDVIGKGGAVIRALTEETRTTIEIEDDGTIKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ A RRI+++T + GK+Y G V R+ DFGA + + G++GL+HISQI+ KR+
Sbjct: 600 EDNEKIIYAIRRIQEITVDPEPGKIYLGKVTRITDFGAFVSCVGGREGLVHISQIAEKRI 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I D L Q+V+VK++ ID +GRI+LSM
Sbjct: 660 ENIPDHLHIGQEVQVKIIEIDRQGRIRLSM 689
>gi|229512909|ref|ZP_04402376.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
gi|229350158|gb|EEO15111.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
Length = 708
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 511/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ +E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAAQAETRLVEAYQITEKMARYDRIHAISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|170729437|ref|YP_001774870.1| polynucleotide phosphorylase/polyadenylase [Xylella fastidiosa M12]
gi|226704835|sp|B0U1R2.1|PNP_XYLFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167964230|gb|ACA11240.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa M12]
Length = 700
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/692 (54%), Positives = 511/692 (73%), Gaps = 9/692 (1%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L TVV+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPGSFFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S++P+
Sbjct: 63 QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI ++IG S ALS++ +PF GP+G AKVGY DG+YILNPT +LKKS L+L+VAGT
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+IFGH +M+ I I+ L G + +W P K+ L+
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTEPSDWVPPAKNDALV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-----IDNENLTIDINDINCIL 361
+ + ++ A+ I+ K R + D+ L ++ NL + +
Sbjct: 243 IALKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFG--- 299
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+LE + +R +LD +RID R + +RPI+++ G+LPR HGS LFTRG+TQA+VV TLG
Sbjct: 300 -ELEYRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR GV KRREIGHGRLA+R +L V+P+
Sbjct: 359 TARDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+
Sbjct: 419 LDEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ELS +APRL+TIKI P KIRDVIGKGGSTI+ +T++TGTQIDI D+G I I
Sbjct: 539 DKALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS N+ + +EAKRRIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+
Sbjct: 599 ASVNNAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D LKE VRVKVL +D +GRI+LS+
Sbjct: 659 RVERVGDKLKEGDVVRVKVLEVDKQGRIRLSI 690
>gi|71276358|ref|ZP_00652635.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Dixon]
gi|71162820|gb|EAO12545.1| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa
Dixon]
Length = 700
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/692 (54%), Positives = 511/692 (73%), Gaps = 9/692 (1%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L TVV+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPGSFFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S++P+
Sbjct: 63 QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI ++IG S ALS++ +PF GP+G AKVGY DG+YILNPT +LKKS L+L+VAGT
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKVGYNDGQYILNPTVSELKKSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+IFGH +M+ I I+ L G + +W P K+ L+
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKNDALV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-----IDNENLTIDINDINCIL 361
+ + ++ A+ I+ K R + D+ L ++ NL + +
Sbjct: 243 IALKEVIGGRLSDAFHIREKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFG--- 299
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+LE + +R +LD +RID R + +RPI+++ G+LPR HGS LFTRG+TQA+VV TLG
Sbjct: 300 -ELEYRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR GV KRREIGHGRLA+R +L V+P+
Sbjct: 359 TARDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVQKRREIGHGRLARRGVLAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+
Sbjct: 419 LDEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ELS +APRL+TIKI P KIRDVIGKGGSTI+ +T++TGTQIDI D+G I I
Sbjct: 539 DKALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIVI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS N+ + +EAKRRIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+
Sbjct: 599 ASVNNAAAREAKRRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D LKE VRVKVL +D +GRI+LS+
Sbjct: 659 RVERVGDKLKEGDVVRVKVLEVDKQGRIRLSI 690
>gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|81418115|sp|Q7MYZ0.1|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) (PNPase) (CAP87K) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 709
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/690 (53%), Positives = 516/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + ++IE G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR+PGSFF+REG+P E ET+++RLIDRP+RPLFP+G+LNE+QIV V+SV
Sbjct: 61 VNYQERTYAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S L++S +PF GP+G A+VGYI+ +Y+LNPT+++LK S LDL+V+
Sbjct: 121 NPQVNPDIVAMIGASAVLALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L E+ +L A++FGHE+ ++ I+ IN L G++K NW P ++
Sbjct: 181 GTAGAVLMVESEADILTEEQMLGAVVFGHEQQQVVIDNINALAAEAGKEKWNWVPESVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ AY+I KQ R I +++ ++L++ + ++ +I+ IL
Sbjct: 241 ALHDRVAGLAEDRLGDAYRITEKQERYAQVDAIKEEVTAALLEQDE-ALEEAEIHEILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE K++R ++L RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKKVVRSRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR + V+P N
Sbjct: 360 RDAQIIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVAAVMPKAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSCEGISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ +N++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINSPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RIE++T +++ ++YTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAISRIEEITAEIEVARIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L+ Q+V VKVL ID +GR++LS+
Sbjct: 660 EKVADYLQVGQEVSVKVLEIDRQGRVRLSI 689
>gi|410086374|ref|ZP_11283086.1| Polyribonucleotide nucleotidyltransferase [Morganella morganii
SC01]
gi|409767219|gb|EKN51299.1| Polyribonucleotide nucleotidyltransferase [Morganella morganii
SC01]
Length = 718
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/699 (53%), Positives = 521/699 (74%), Gaps = 12/699 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+ F+YG + ++IE G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLNPTIRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG+LNE+QI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEVQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VG+I+ +Y+LNPTT++L S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGIPFNGPIGAARVGFINDQYVLNPTTDELAVSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGHE+ +I I IN L G+ K +W P ++
Sbjct: 181 GTKGAVLMVESEAQLLTEEQMLGAVVFGHEQQQIVIENINALAAEAGKPKWDWQPEPVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQ--------IRDLTFKNISKDIYSSLIDNENLTIDI- 354
TL ++ +SE + AY+I KQ I+D T + + + E LT ++
Sbjct: 241 TLRDRVAELSEKALGDAYRITEKQDRYAQVDIIKDATISALEAEFAAR---GEELTGELK 297
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
++I+ IL +E ++R ++L+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA
Sbjct: 298 HEISDILAAVEKSVVRTRVLNGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQA 357
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
LV ATLGT+RD Q +D +MGE TD+F+ HYN PP+ G+ G +G PKRREIGHGRLAKR
Sbjct: 358 LVTATLGTARDAQTLDQVMGEITDTFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRG 417
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
+L V+P+ +F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K
Sbjct: 418 VLAVMPSQEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVK 477
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+G+K V+LSDILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK
Sbjct: 478 EGDKFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQAKGAR 537
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+IL M+ + + ++S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I
Sbjct: 538 LHILGVMEQAINSPRADISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIE 597
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
D+G + IA+ + + A RRIE++T V++G++Y G V+R+ DFGA + I GK+GL+H
Sbjct: 598 DDGTVKIAATDGDKAKMAIRRIEEITAEVEVGRIYNGKVVRIVDFGAFVAIGGGKEGLVH 657
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
ISQI+ KRV ++D+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 658 ISQIADKRVEKVSDYLEMGQEVPVKVLEIDRQGRIRLSM 696
>gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans
568]
gi|187611288|sp|A8G911.1|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans
568]
Length = 705
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/690 (53%), Positives = 513/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLTPIIRKFQYGQHTLTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+S+
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT+++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTSDELKESSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ L ED +L A++FGHE+ +I I IN LV G+ K +W ++
Sbjct: 181 GTAGAVLMVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKAKWDWQAPAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY I KQ R I + +L+ + T+D+++I IL
Sbjct: 241 ALHARVAELAEGRLGDAYHITEKQERYAQVDAIKSSVVETLLAQDE-TLDVSEIQDILGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 VEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L ++P
Sbjct: 360 RDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISTPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|421263866|ref|ZP_15714884.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. P52VAC]
gi|401688993|gb|EJS84505.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. P52VAC]
Length = 714
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/691 (55%), Positives = 505/691 (73%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQIV V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I+AI E G+ + +W +
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIND--INCILY 362
LI K+ I+E ++ +AY+I KQ R I D+ + + DI++ I I
Sbjct: 241 LIEKVKAIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFT 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT
Sbjct: 301 TLESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P
Sbjct: 361 ERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTF 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+L
Sbjct: 421 AEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVME 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA
Sbjct: 541 QAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S +E RIE +T V+ G VY G V RL DFGA + I+ K+GL+HISQI+ +R
Sbjct: 601 AVDGNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L Q+V VKV+ ID +GRI+L+M
Sbjct: 661 VEKVSDYLAVGQEVTVKVVEIDRQGRIRLTM 691
>gi|300113661|ref|YP_003760236.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
C-113]
gi|299539598|gb|ADJ27915.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
C-113]
Length = 695
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 507/689 (73%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I K +YG + +E G IARQA+ +V+V +TV+L TVV K+ +FFPLTV
Sbjct: 1 MTPIKKVIEYGDRPLILETGCIARQASGAVVVRYGETVVLVTVVGMKEAVEGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+P+E+ET+ SRLIDRP+RPLFP+ ++NE+Q++ V+S +
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFVNEVQVIATVISSD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
+ DPDI S+IG S AL++S +PF P+ A+VGYIDG+Y+LNPT Q+++S LDL+VAG
Sbjct: 121 SENDPDIPSLIGASAALTLSGIPFATPIAAARVGYIDGQYVLNPTLSQMEESALDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TEKA++ VESE+++LPE+I+L +++FGH++M+ I I EL + G+ +W ++++
Sbjct: 181 TEKAVLMVESEAQELPEEIMLGSVMFGHQEMQEVIQTIRELAEEAGKPAWDWQSPIEEED 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L S I +I E ++++AYQ+++KQ R + I SL+ +N + + L
Sbjct: 241 LKSAIRDIGEARVQEAYQVRSKQERQACLTELRNSIVGSLVPEDNSQWSREQVLEAMGAL 300
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +++R+QIL G RID R IRPISI TG+LPRTHGS+LFTRG+TQ+LV TLGT R
Sbjct: 301 EKRLVREQILAGGERIDGRDTTAIRPISITTGLLPRTHGSALFTRGETQSLVATTLGTER 360
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDA+ GE + FMLHYN PP+ G+ G +G PKRREIGHGRLAKR+L V+P+
Sbjct: 361 DAQVIDAIEGERRERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNAVVPDEES 420
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y IR+VSEITESNGSSSMA+VCG L+L+DAGVPI VAGIAMGLIK+ ++ +LSD
Sbjct: 421 FPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEADRFAVLSD 480
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A++G +IL+KM
Sbjct: 481 ILGDEDHLGDMDFKVAGTEKGVTALQMDIKIDGITEEIMRTALTQAREGRFHILQKMNEI 540
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S++APR+I KI+P KIRDVIGKGG+TIR LTEETGT IDI D+G + I S
Sbjct: 541 ISTPRQEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGTTIDIVDDGTVKIFSA 600
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ GQEAKRR+E++ V++GK+Y G V RL DFGA + IL GKDGLLHISQIS++RV
Sbjct: 601 DKADGQEAKRRVEEIVSDVEVGKIYEGRVSRLMDFGAFVTILPGKDGLLHISQISAERVK 660
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E +RVKVL +D +GR++LS+
Sbjct: 661 NVSDKLSEGDIIRVKVLEVDKQGRVRLSV 689
>gi|153215841|ref|ZP_01950173.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
gi|153829184|ref|ZP_01981851.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
gi|229520938|ref|ZP_04410360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
11079-80]
gi|229530452|ref|ZP_04419840.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
12129(1)]
gi|419829193|ref|ZP_14352681.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-1A2]
gi|419831989|ref|ZP_14355454.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-61A2]
gi|421350476|ref|ZP_15800842.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-25]
gi|422916359|ref|ZP_16950697.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-02A1]
gi|423817270|ref|ZP_17715301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55C2]
gi|423849305|ref|ZP_17719087.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-59A1]
gi|423878959|ref|ZP_17722694.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-60A1]
gi|423996781|ref|ZP_17740044.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-02C1]
gi|424015483|ref|ZP_17755330.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55B2]
gi|424020594|ref|ZP_17760374.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-59B1]
gi|424623962|ref|ZP_18062439.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-50A1]
gi|424628537|ref|ZP_18066843.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-51A1]
gi|424632498|ref|ZP_18070614.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-52A1]
gi|424635583|ref|ZP_18073604.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55A1]
gi|424639497|ref|ZP_18077393.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-56A1]
gi|424647656|ref|ZP_18085333.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-57A1]
gi|443528480|ref|ZP_21094514.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-78A1]
gi|124114558|gb|EAY33378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
gi|148875373|gb|EDL73508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
gi|229332225|gb|EEN97713.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
12129(1)]
gi|229342171|gb|EEO07167.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
11079-80]
gi|341640211|gb|EGS64802.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-02A1]
gi|395954598|gb|EJH65208.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-25]
gi|408015768|gb|EKG53341.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-50A1]
gi|408020700|gb|EKG57987.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-52A1]
gi|408026699|gb|EKG63694.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-56A1]
gi|408027134|gb|EKG64116.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55A1]
gi|408036713|gb|EKG73134.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-57A1]
gi|408058743|gb|EKG93529.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-51A1]
gi|408621827|gb|EKK94819.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-1A2]
gi|408636493|gb|EKL08630.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55C2]
gi|408643667|gb|EKL15384.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-60A1]
gi|408644704|gb|EKL16378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-59A1]
gi|408651890|gb|EKL23129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-61A2]
gi|408854159|gb|EKL93923.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-02C1]
gi|408861909|gb|EKM01476.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55B2]
gi|408866459|gb|EKM05839.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-59B1]
gi|443453054|gb|ELT16887.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-78A1]
Length = 709
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|374335287|ref|YP_005091974.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
gi|372984974|gb|AEY01224.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
Length = 715
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/689 (53%), Positives = 515/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG + +++E G IARQAT++V+ SI+DT +L +VV ++ + +FFPLTV
Sbjct: 1 MNPIVKTFQYGQHTVTLETGVIARQATAAVMASIDDTSVLVSVVGKREADESRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPGSFFKREG+P+E ET+ +RLIDRPIRPLFP+G+ NE+Q++ V+S N
Sbjct: 61 NYQERTYAAGRIPGSFFKREGRPTEGETLTARLIDRPIRPLFPDGFKNEVQVIATVMSAN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PDI S++G S AL+IS +PF GP+G A+VGY++G+Y+LNP+ +LK S LDL+VAG
Sbjct: 121 PEIAPDIISMLGTSAALAISGIPFAGPIGAARVGYMNGEYVLNPSISELKDSQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ LPE+++L A+++GHE+++ A+NAINE VG + +W P +++
Sbjct: 181 TAGAVLMVESEASVLPEEVMLGAVMYGHEQLQTAVNAINEFAAEVGTQPWDWQPKAENEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +K+ ++ ++ +AY+I +K R +I + +++++ ++ +I +I +L L
Sbjct: 241 LKAKVAELASAELGEAYRITDKTARRDAISDIKAKVQAAVLE-QSPEAEIKEIQELLGKL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E I+R +++ RID R + IR +++ TG+LPR HGS+LFTRG+TQALV ATLGT R
Sbjct: 300 EKTIVRGRVVRGEPRIDGREPDMIRALNVATGLLPRAHGSALFTRGETQALVAATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE + FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQLIDELTGERANRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVAAVMPSQEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEAEGFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+++AL +A+ +IL+ M
Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGVTALQMDIKIEGITKEIMEVALKQARNARLHILKVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S FAPR+ TIKI+P KIRDVIGKGG+TIR LTEETGT I+++D+G + IA+
Sbjct: 540 LQAPRADISDFAPRIHTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + + A RRIE+LT V+ G +Y G V+RL DFGA + IL GKDGL+HISQI+ +RV
Sbjct: 600 DGEAAKLAIRRIEQLTAEVESGTIYEGQVVRLADFGAFVNILPGKDGLVHISQITEERVK 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LK V+VKVL +D +GRI+LS+
Sbjct: 660 NVSDHLKVGDTVKVKVLEVDRQGRIRLSI 688
>gi|386833714|ref|YP_006239028.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. multocida str. 3480]
gi|385200414|gb|AFI45269.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. multocida str. 3480]
Length = 714
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/691 (55%), Positives = 505/691 (73%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQIV V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I+AI E G+ + +W +
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIND--INCILY 362
LI K+ I+E ++ +AY+I KQ R I D+ + + DI++ + I
Sbjct: 241 LIEKVKAIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKVVDIFT 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT
Sbjct: 301 ALESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P
Sbjct: 361 ERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+L
Sbjct: 421 AEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVME 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA
Sbjct: 541 QAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S +E RIE +T V+ G VY G V RL DFGA + I+ K+GL+HISQI+ +R
Sbjct: 601 AVDGNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L Q+V VKV+ ID +GRI+L+M
Sbjct: 661 VEKVSDYLAVGQEVTVKVVEIDRQGRIRLTM 691
>gi|15602979|ref|NP_246051.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Pm70]
gi|378773733|ref|YP_005175976.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
36950]
gi|383309735|ref|YP_005362545.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. HN06]
gi|417853812|ref|ZP_12499158.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Anand1_goat]
gi|81636811|sp|Q9CLU1.1|PNP_PASMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|12721458|gb|AAK03198.1| Pnp [Pasteurella multocida subsp. multocida str. Pm70]
gi|338218996|gb|EGP04715.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Anand1_goat]
gi|356596281|gb|AET15007.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
36950]
gi|380871007|gb|AFF23374.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. HN06]
Length = 714
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/691 (55%), Positives = 505/691 (73%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQIV V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I+AI E G+ + +W +
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIND--INCILY 362
LI K+ I+E ++ +AY+I KQ R I D+ + + DI++ I I
Sbjct: 241 LIEKVKAIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFT 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT
Sbjct: 301 ALESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P
Sbjct: 361 ERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+L
Sbjct: 421 AEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVME 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA
Sbjct: 541 QAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S +E RIE +T V+ G VY G V RL DFGA + I+ K+GL+HISQI+ +R
Sbjct: 601 AVDGNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L Q+V VKV+ ID +GRI+L+M
Sbjct: 661 VEKVSDYLAVGQEVTVKVVEIDRQGRIRLTM 691
>gi|343500722|ref|ZP_08738612.1| polynucleotide phosphorylase/polyadenylase [Vibrio tubiashii ATCC
19109]
gi|418477451|ref|ZP_13046584.1| polynucleotide phosphorylase/polyadenylase [Vibrio tubiashii NCIMB
1337 = ATCC 19106]
gi|342820084|gb|EGU54915.1| polynucleotide phosphorylase/polyadenylase [Vibrio tubiashii ATCC
19109]
gi|384575191|gb|EIF05645.1| polynucleotide phosphorylase/polyadenylase [Vibrio tubiashii NCIMB
1337 = ATCC 19106]
Length = 710
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PD+ ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ ++ I AINE V +W ++
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
TL++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TTLVNKIAELAEAKLVEAYQITEKMARYDRIHAIAAEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|121998524|ref|YP_001003311.1| polynucleotide phosphorylase/polyadenylase [Halorhodospira
halophila SL1]
gi|187610274|sp|A1WXU7.1|PNP_HALHL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121589929|gb|ABM62509.1| Polyribonucleotide nucleotidyltransferase [Halorhodospira halophila
SL1]
Length = 702
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/696 (53%), Positives = 513/696 (73%)
Query: 58 MMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTY 117
M + + +SF++G +++++E G +ARQA +VLV + DTV+L TVV KDP +
Sbjct: 1 MSESQLSLTPVKRSFQFGQHQVTLETGGVARQADGAVLVDMADTVVLVTVVGRKDPAAAR 60
Query: 118 NFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIV 177
+F PLTV+Y E+ YAAGRIPG FFKREG+PSE+ET+ RLIDRPIRPLFPEG+ E+Q++
Sbjct: 61 DFLPLTVNYQERTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFRQEVQVI 120
Query: 178 VYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSH 237
VLS+N ++D DI ++IG S AL++S +PF GP+G +VG++DG+++LNPT Q +S
Sbjct: 121 ATVLSLNDEVDADIPAMIGTSAALALSGIPFEGPIGACRVGHLDGEFVLNPTFSQTAESD 180
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGT+ A++ VESE+ LPE +L+A+++GHE+M++AI+ IN+L G+ + +W
Sbjct: 181 LDLVVAGTQDAVLMVESEANLLPESTMLDAVLYGHEQMQVAIDTINDLAAEAGKPRWDWQ 240
Query: 298 PIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDI 357
P K+++L S + + + AYQI +KQ R + +L D E D+
Sbjct: 241 PPAKNESLDSAVAELVRSDLEAAYQIADKQERSERVGALRDKAVEALADEEREGWGAGDV 300
Query: 358 NCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVV 417
LE KI+R +IL RID R +RP++++ G+LPRTHGS++FTRG+TQA+VV
Sbjct: 301 GEAFKTLEKKIVRGRILAGHPRIDGRDNQTVRPLNVQAGVLPRTHGSAIFTRGETQAIVV 360
Query: 418 ATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP 477
+TLGT RD Q IDAL GE + FMLHYN PP+ G+ G IG PKRREIGHG+LAKR +
Sbjct: 361 STLGTGRDAQVIDALEGERREPFMLHYNFPPYCVGETGFIGTPKRREIGHGKLAKRGVEA 420
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE 537
V+P++ +F Y IR+VSE+TESNGSSSMA+VCG L+L+DAGVP+ VAGIAMGLIK+G+
Sbjct: 421 VMPSDEEFPYVIRVVSEVTESNGSSSMATVCGTSLSLMDAGVPLKAQVAGIAMGLIKEGD 480
Query: 538 KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
+ +L+DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I++ AL +A+ G +I
Sbjct: 481 EFAVLTDILGDEDHLGDMDFKVAGSKDGVTALQMDIKIDGITREIMEQALDQARSGRLHI 540
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
LE+M + K + ++S++APRL+T++IDP +IRDVIGKGG+TIR LTEETGT IDI+DEG
Sbjct: 541 LEQMNQVIDKPREQMSEYAPRLLTMRIDPERIRDVIGKGGATIRGLTEETGTNIDISDEG 600
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQ 717
++TIAS + + +EAK+RIE LT V++GKVY G V +L DFGA + IL G+DGL+HISQ
Sbjct: 601 VVTIASADKAAAEEAKKRIELLTADVEVGKVYDGKVAKLMDFGAFVNILPGRDGLVHISQ 660
Query: 718 ISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
IS+ RV + D L E VRVKVL +D +GRI+LSM
Sbjct: 661 ISNNRVENVADELSEGDSVRVKVLEVDRQGRIRLSM 696
>gi|417851111|ref|ZP_12496891.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. gallicida str. Anand1_poultry]
gi|338220035|gb|EGP05616.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. gallicida str. Anand1_poultry]
Length = 714
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/691 (55%), Positives = 505/691 (73%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQIV V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I+AI E G+ + +W +
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIND--INCILY 362
LI K+ I+E ++ +AY+I KQ R I D+ + + DI++ I I
Sbjct: 241 LIEKVKAIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEEKIVDIFT 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT
Sbjct: 301 ALESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P
Sbjct: 361 ERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+L
Sbjct: 421 AEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVME 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA
Sbjct: 541 QAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S +E RIE +T V+ G VY G V RL DFGA + I+ K+GL+HISQI+ +R
Sbjct: 601 AVDGNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L Q+V VKV+ ID +GRI+L+M
Sbjct: 661 VEKVSDYLAVGQEVTVKVVEIDRQGRIRLTM 691
>gi|424792148|ref|ZP_18218409.1| polyribonucleotide nucleotidyltransferase [Xanthomonas translucens
pv. graminis ART-Xtg29]
gi|422797207|gb|EKU25578.1| polyribonucleotide nucleotidyltransferase [Xanthomonas translucens
pv. graminis ART-Xtg29]
Length = 702
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/688 (55%), Positives = 511/688 (74%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ IN INEL G K +W K++ +I
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNEGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN-DINCILYDLE 365
+ + ++ A+Q+++K R I KD+ + L + + D++ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLAQLTPRAAVEGWVAADLSKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS++ G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTNVRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSMEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGEDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M + +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMASAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
++ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRSELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS RV
Sbjct: 603 AIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE V+VKVL +D +GRI+LSM
Sbjct: 663 VSDVLKEGDLVKVKVLEVDKQGRIRLSM 690
>gi|424047590|ref|ZP_17785149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HENC-03]
gi|408883828|gb|EKM22595.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HENC-03]
Length = 710
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A+++GH++ + INAINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVYGHDQQQTVINAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|15836844|ref|NP_297532.1| polynucleotide phosphorylase [Xylella fastidiosa 9a5c]
gi|9105050|gb|AAF83052.1|AE003877_7 polynucleotide phosphorylase [Xylella fastidiosa 9a5c]
Length = 719
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/709 (53%), Positives = 516/709 (72%), Gaps = 17/709 (2%)
Query: 50 HHSRRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVS 109
HH + L+ KI K+F+YG + +++E GE+ARQA +V+V ++DTV+L TVV+
Sbjct: 13 HHPKETLVA--------KITKTFQYGKHTVTLETGEVARQANGAVIVKMDDTVLLVTVVA 64
Query: 110 CKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEG 169
K +FFPLTVDY EK YA GRIPGSFFKREG+ +E+ET+ISRLIDRPIRPLFPE
Sbjct: 65 AKTAREGQDFFPLTVDYQEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPED 124
Query: 170 YLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPT 229
Y NE+QI+ V+S++P+ID DI ++IG S ALS++ +PF GP+G AK+GY DG+YILNPT
Sbjct: 125 YKNEVQIIAMVMSLDPEIDGDIPAMIGASAALSLAGIPFKGPIGAAKIGYNDGQYILNPT 184
Query: 230 TEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNV 289
+LKKS L+L+VAGT A++ VESE+ L E+++L A+IFGH +M+ I I+ L
Sbjct: 185 VSELKKSQLELVVAGTANAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEA 244
Query: 290 GQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL----- 344
G + +W P K+ L+ + + ++ A+ I++K R + D+ L
Sbjct: 245 GTQPSDWVPPAKNDALVIALKEVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLE 304
Query: 345 IDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGS 404
++ NL + + +LE + +R +LD +RID R + +RPI+++ G+LPR HGS
Sbjct: 305 VEGWNLAELLKEFG----ELEYRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGS 360
Query: 405 SLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRRE 464
LFTRG+TQA+VV TLGT+RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR GVPKRRE
Sbjct: 361 GLFTRGETQAIVVTTLGTARDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRRE 420
Query: 465 IGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEH 524
IGHGRLA+R +L V+P+ ++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+
Sbjct: 421 IGHGRLARRGVLAVMPSLDEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAP 480
Query: 525 VAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQ 584
VAGIAMGL+K+GE+ V+LSDILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++
Sbjct: 481 VAGIAMGLVKEGERFVVLSDILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMR 540
Query: 585 IALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLT 644
AL +AK G +IL +M + + ELS +APRL+TIKI P KIRDVIGKGGSTI+ +T
Sbjct: 541 QALQQAKVGRLHILGEMDKALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAIT 600
Query: 645 EETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIR 704
++TGTQIDI D+G I IAS N+ + +EAK RIE++T V+ G++Y G V ++ DFGA +
Sbjct: 601 KDTGTQIDIQDDGTIIIASVNNAAAREAKCRIEQITSDVEPGRIYEGKVAKIMDFGAFVT 660
Query: 705 ILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
IL GKDGL+H+SQISS+RV + D LKE VRVKVL +D +GRI+LS+
Sbjct: 661 ILPGKDGLVHVSQISSERVERVGDKLKEGDVVRVKVLEVDKQGRIRLSI 709
>gi|389774740|ref|ZP_10192859.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter
spathiphylli B39]
gi|388438339|gb|EIL95094.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter
spathiphylli B39]
Length = 702
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/688 (53%), Positives = 507/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K+ KSF+YG++++++E GEIARQA+ +V+ S+ TV+L T V+ +FFPLTVDY
Sbjct: 3 KVTKSFQYGNHEVTLETGEIARQASGAVMASMGGTVVLVTAVAATKQKEGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
+EK Y+AGRIPG FFKREG+P+E+ET+ SRLIDRP+RPLFPE + NE+Q++ V+S+NP+
Sbjct: 63 VEKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPEDFKNEVQVIAQVVSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI +++G S ALS++ +PF GP+G A+VGY +GKY+LNP+ +LK S LDL+VAGT
Sbjct: 123 VDGDIVALLGASAALSLAGIPFKGPIGAARVGYANGKYLLNPSQTELKTSELDLVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L ED++L A++FGH++M+ AI AI EL G++ +W ++++L+
Sbjct: 183 GAVLMVESEAQLLSEDVMLGAVMFGHQQMQTAIRAIAELATEAGKRSWDWKAPARNESLV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYDLE 365
+ + ++ A+Q+++K R I D+ + L E + +LE
Sbjct: 243 AAVKGAVGDQLTAAFQVRDKLERRDAISAIKSDVLAGLKAQAEENGWSTAAMAKEFEELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+R +L +RID R ++D+R I+ R G+LPRTHGS+LFTRG+TQALVV TLGT+RD
Sbjct: 303 YHTMRDSVLKTKVRIDGRQLDDVRAITARVGVLPRTHGSALFTRGETQALVVITLGTTRD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA GE D F+ HYN PPF+ G+ GR G PKRREIGHGRLAKR + V P+ +F
Sbjct: 363 AQIIDAPGGESKDPFLFHYNFPPFSVGEAGRFGAPKRREIGHGRLAKRGVQAVKPSIEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMASVCG LA++DAGVP+ VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYVVRVVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+++AL +AK+G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGSAEGISALQMDIKIDGITEEIMKVALAQAKQGRLHILGEMGKAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ E+S+FAPRLITIKI P KIR+VIGKGG+TIR++TEETGT IDI+D+G I I S N
Sbjct: 543 TTARTEMSEFAPRLITIKIHPDKIREVIGKGGATIRSITEETGTTIDISDDGTIIIGSVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+G+ AK+RIE++T V+ G++Y G V +L DFGA + I+ GKDGL+H+SQIS +RV
Sbjct: 603 REAGEAAKKRIEQITSDVEPGRIYEGKVAKLMDFGAFVTIMPGKDGLVHVSQISDERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE V+VKVL +D +GRI+LSM
Sbjct: 663 VSDKLKEGDIVKVKVLEVDKQGRIRLSM 690
>gi|387121413|ref|YP_006287296.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|416034324|ref|ZP_11573306.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|429734664|ref|ZP_19268671.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
gi|444334238|ref|ZP_21149846.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347998188|gb|EGY39126.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|385875905|gb|AFI87464.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429151510|gb|EKX94376.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
gi|443550672|gb|ELT58855.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 743
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/698 (54%), Positives = 512/698 (73%), Gaps = 1/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
L + K + N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD
Sbjct: 26 LFICKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKE 85
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ
Sbjct: 86 GQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQ 145
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
+V V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+G+++LNPT + K+
Sbjct: 146 VVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQ 205
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAGT+KA++ VESE+ L E+ +L A+++GH++ ++ I AI ELV VG+ + +
Sbjct: 206 SRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEVGKPRWD 265
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W + LI+K+ ++E ++ AY+I KQ R I D+ + I E+ I
Sbjct: 266 WVAPEPNTALINKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQ-ITAEDEEISEG 324
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 325 KIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 384
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 385 AVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 444
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 445 AAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 504
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+K V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 505 EDKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARM 564
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D
Sbjct: 565 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 624
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ + + Q+ RIE +T V++G Y G V+RL DFGA + I+ K+GL+HI
Sbjct: 625 DGTVKIAAVDKNAVQDVMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHI 684
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 685 SQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 722
>gi|429098486|ref|ZP_19160592.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
582]
gi|426284826|emb|CCJ86705.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
582]
Length = 690
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/670 (55%), Positives = 505/670 (75%), Gaps = 2/670 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLT++Y E+ YAAGRIPG FF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 122 IPFNGPIGSARVGYINDQYVLNPTQEELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ +I I IN+LV+ G+ + +W P ++TL +++ ++E ++ AY+I +
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAANETLNARVKALAESRLSDAYRITD 241
Query: 326 KQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNR 383
KQ R I D+ ++L E +D N++ IL+ +E ++R ++L RID R
Sbjct: 242 KQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIEKNVVRSRVLAGEPRIDGR 301
Query: 384 GVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLH 443
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT RD Q ID LMGE TD F+ H
Sbjct: 302 EKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTDRFLFH 361
Query: 444 YNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSS 503
YN PP++ G+ G +G PKRREIGHGRLAKR +L V+P ++F Y++R+VSEITESNGSSS
Sbjct: 362 YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSSS 421
Query: 504 MASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTV 563
MASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LSDILGDED GDMDFKVAG+
Sbjct: 422 MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKVAGSR 481
Query: 564 NGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIK 623
GITALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIK
Sbjct: 482 EGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIK 541
Query: 624 IDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESV 683
I P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +
Sbjct: 542 ISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 601
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGI 743
++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +
Sbjct: 602 EVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 661
Query: 744 DDRGRIKLSM 753
D +GR++LS+
Sbjct: 662 DRQGRVRLSI 671
>gi|417819502|ref|ZP_12466118.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE39]
gi|423947605|ref|ZP_17733564.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-40]
gi|423976875|ref|ZP_17737112.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-46]
gi|340041064|gb|EGR02032.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE39]
gi|408661621|gb|EKL32605.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-40]
gi|408666089|gb|EKL36891.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-46]
Length = 709
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 511/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAALL-AENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARRDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|329997819|ref|ZP_08302920.1| polyribonucleotide nucleotidyltransferase, partial [Klebsiella sp.
MS 92-3]
gi|328538902|gb|EGF64965.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. MS 92-3]
Length = 684
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/668 (55%), Positives = 509/668 (76%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAG+IPG FF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ +I I IN+LV+ G+ + +W P ++ L +++ ++E ++ AY+I +
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITD 241
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I + ++L+ E+ T+D N++ IL+ +E ++R ++L RID R
Sbjct: 242 KQERYAQVDVIKSETIATLV-AEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREK 300
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+RD Q ID LMGE TDSF+ HYN
Sbjct: 301 DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLFHYN 360
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP++ G+ G +G PKRREIGHGRLAKR +L V+P +F Y++R+VSEITESNGSSSMA
Sbjct: 361 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMA 420
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +G
Sbjct: 421 SVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDG 480
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
I+ALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIKI+
Sbjct: 481 ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN 540
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + Q A RRIE++T +++
Sbjct: 541 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAEIEV 600
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D
Sbjct: 601 GRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 660
Query: 746 RGRIKLSM 753
+GR++LS+
Sbjct: 661 QGRVRLSI 668
>gi|285017812|ref|YP_003375523.1| polynucleotide phosphorylase [Xanthomonas albilineans GPE PC73]
gi|283473030|emb|CBA15535.1| probable polynucleotide phosphorylase protein [Xanthomonas
albilineans GPE PC73]
Length = 702
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/690 (55%), Positives = 505/690 (73%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTVSDLKDSQLELVVAGTS 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L ED++L A+ FGH +M+ INAINEL G K +W K+ +I
Sbjct: 183 NAVLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTAEAGTKPSDWVAPAKNAAMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN---ENLTIDINDINCILYD 363
+ ++ A+Q+++K R I KD+ + L EN D+ +
Sbjct: 243 VALKEAVGGQLAAAFQVRDKLQRRDAIAAIKKDVLAQLAPRATAENWVA--ADLAKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R +L +RID R ++ +RPIS++ G+LPRTHGS+LFTRG+TQA+VV TLGT+
Sbjct: 301 LEYQTMRGSVLSTKVRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVVTTLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P
Sbjct: 361 RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTME 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G V+LS
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMAS 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 ALTSPRAELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE V+VKVL +D +GRI+LSM
Sbjct: 661 EKVGDKLKEGDVVKVKVLEVDKQGRIRLSM 690
>gi|85058359|ref|YP_454061.1| polynucleotide phosphorylase/polyadenylase [Sodalis glossinidius
str. 'morsitans']
gi|123725447|sp|Q2NW19.1|PNP_SODGM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|84778879|dbj|BAE73656.1| polyribonucleotide nucleotidyltransferase [Sodalis glossinidius
str. 'morsitans']
Length = 705
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/690 (53%), Positives = 506/690 (73%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + ++E G +ARQAT++V+ S++DT + TVV K + +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTFTLETGMMARQATAAVMASMDDTAVFVTVVGAKQAKTGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+ ++ V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVHVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT +L S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTQAELATSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L ED +L A+++GH++ +I I+ IN+LV G+ K W +
Sbjct: 181 GTQNAVLMVESEAQLLSEDQMLGAVVYGHDQQQIVIDNINQLVAEAGKPKWQWQAQDVNA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ +Y+I KQ R I D+ +L ++ T+D+ +I IL
Sbjct: 241 GLQARVAELAESRLGDSYRITEKQERYAAVDAIKADVVEALT-GQDETLDVGEIKDILGA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKSVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+PN +
Sbjct: 360 RDAQNIDELTGERTDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNAS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ G+TALQMDIKI GIT++I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITHEIMQVALNQAKGARMHILGVMER 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + +S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + +A+
Sbjct: 540 AISSPRGNISEFAPRIHTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKVAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKARHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFFAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVADYLELGQEVPVKVLEVDRQGRVRLSI 689
>gi|415757846|ref|ZP_11481479.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416049988|ref|ZP_11576804.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416067609|ref|ZP_11582353.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|347990983|gb|EGY32497.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348001986|gb|EGY42709.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348655342|gb|EGY70801.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-3]
Length = 752
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/698 (54%), Positives = 512/698 (73%), Gaps = 1/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
L + K + N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD
Sbjct: 35 LFICKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKE 94
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ
Sbjct: 95 GQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQ 154
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
+V V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+G+++LNPT + K+
Sbjct: 155 VVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQ 214
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAGT+KA++ VESE+ L E+ +L A+++GH++ ++ I AI ELV VG+ + +
Sbjct: 215 SRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEVGKPRWD 274
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W + LI+K+ ++E ++ AY+I KQ R I D+ + I E+ I
Sbjct: 275 WVAPEPNTALINKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQ-ITAEDEEISEG 333
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 334 KIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 393
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 394 AVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 453
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 454 AAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 513
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+K V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 514 EDKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARM 573
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D
Sbjct: 574 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 633
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ + + Q+ RIE +T V++G Y G V+RL DFGA + I+ K+GL+HI
Sbjct: 634 DGTVKIAAVDKNAVQDVMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHI 693
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 694 SQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 731
>gi|383814863|ref|ZP_09970281.1| polynucleotide phosphorylase/polyadenylase [Serratia sp. M24T3]
gi|383296355|gb|EIC84671.1| polynucleotide phosphorylase/polyadenylase [Serratia sp. M24T3]
Length = 705
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/690 (53%), Positives = 514/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ ++ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLKATVRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+IPGSFF+RE +PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+S+
Sbjct: 61 VNYQERTYAAGKIPGSFFRREARPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++L +S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINNQYVLNPTADELLESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ +I IN IN LV VG+ K +W P V +
Sbjct: 181 GTQGAVLMVESEAEVLSEEQMLGAVVFGHDQQQIVINEINSLVAEVGKPKWDWQPEVVNA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++I SE + AY+I +KQ R I ++ +SL+ +E+ T+D +I+ +L
Sbjct: 241 ELHARIAAKSEALLGDAYRITDKQERYARVNVIKDEVTASLL-SEDETLDAGEISDLLGA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGSSLFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLSGAPRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMG TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNLDELMGAKTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKFE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LS
Sbjct: 420 DFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q AL +AK +IL M
Sbjct: 480 DILGDEDHLGDMDFKVAGSSEGITALQMDIKIEGITREIMQAALSQAKGARLHILGVMNQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + ++S+FAPR+ TIKI+ KI+DVIGKGGS IR LTEETGT I+I D+G + I++
Sbjct: 540 AISESRGDISQFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKISA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDNEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLTMGQEVPVKVLEVDRQGRVRLSI 689
>gi|156975660|ref|YP_001446567.1| polynucleotide phosphorylase/polyadenylase [Vibrio harveyi ATCC
BAA-1116]
gi|187611334|sp|A7MZI2.1|PNP_VIBHB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|156527254|gb|ABU72340.1| hypothetical protein VIBHAR_03393 [Vibrio harveyi ATCC BAA-1116]
Length = 710
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/691 (53%), Positives = 511/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ + I AINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|433676724|ref|ZP_20508800.1| polyribonucleotide nucleotidyltransferase [Xanthomonas translucens
pv. translucens DSM 18974]
gi|440730779|ref|ZP_20910848.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas translucens
DAR61454]
gi|430818158|emb|CCP39118.1| polyribonucleotide nucleotidyltransferase [Xanthomonas translucens
pv. translucens DSM 18974]
gi|440377097|gb|ELQ13751.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas translucens
DAR61454]
Length = 702
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/688 (55%), Positives = 511/688 (74%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ IN INEL G K +W K++ +I
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNEGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ + L + + D++ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLAQLTPRAAVEGWVVADLSKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS++ G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSMEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGEDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M + +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMASAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
++ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRSELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS RV
Sbjct: 603 AIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE V+VKVL +D +GRI+LSM
Sbjct: 663 VSDVLKEGDLVKVKVLEVDKQGRIRLSM 690
>gi|388602412|ref|ZP_10160808.1| polynucleotide phosphorylase/polyadenylase [Vibrio campbellii
DS40M4]
gi|444425447|ref|ZP_21220888.1| polynucleotide phosphorylase/polyadenylase [Vibrio campbellii CAIM
519 = NBRC 15631]
gi|444241309|gb|ELU52835.1| polynucleotide phosphorylase/polyadenylase [Vibrio campbellii CAIM
519 = NBRC 15631]
Length = 710
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/691 (53%), Positives = 511/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ + I AINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|145298048|ref|YP_001140889.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
subsp. salmonicida A449]
gi|187470962|sp|A4SJR9.1|PNP_AERS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|142850820|gb|ABO89141.1| polyribonucleotide nucleotidyltransferase [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 713
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 504/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLTV
Sbjct: 1 MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FF+REG+PSE ET+ SRLIDRPIRPLFPEG+LNE+Q+V V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVVATVMSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+ A+VGY++G+Y+LNPTT +L +S LDL+VAG
Sbjct: 121 PLVSPDIVAMIGASAALAISGIPFGGPIAAARVGYMNGQYVLNPTTAELPQSDLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ L E+++L A+++GHE+M++ INAINE +VG + +W P ++
Sbjct: 181 TANAVLMVESEAAILSEEVMLGAVVYGHEQMQVVINAINEFAADVGTQPWDWTPPATNEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +KI ++ ++ +AY+I K +R I + + +I + D I + L
Sbjct: 241 LKAKIAELATAELGEAYRITEKAVRYAAIGAIKQRVIEQVI-AAGVEDDAKKIGEEFHSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +++ RID R IR +S+ TGILPR HGS+LFTRG+TQA+VVATLGT R
Sbjct: 300 ESRIVRGRVVRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L G D FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQNIDELAGHRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT GITALQMDIKI GIT +I++IAL +A+ +IL+ M
Sbjct: 480 ILGDEDHLGDMDFKVAGTTQGITALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+++D+G + I++
Sbjct: 540 IQAPRAEISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + EA RRIE +T +++ ++Y G V+RL DFGA + IL GKDGL+HISQI+ RV
Sbjct: 600 ANEAAMEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQ 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ DFLK V+VKVL +D +GR++LS+
Sbjct: 660 NVADFLKLGDVVKVKVLEVDRQGRVRLSI 688
>gi|254507523|ref|ZP_05119657.1| 3' exoribonuclease family, domain 2, protein [Vibrio
parahaemolyticus 16]
gi|219549593|gb|EED26584.1| 3' exoribonuclease family, domain 2, protein [Vibrio
parahaemolyticus 16]
Length = 709
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 511/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ + I AINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + E+S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREEISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|416052880|ref|ZP_11578515.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347991672|gb|EGY33135.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 754
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/698 (54%), Positives = 512/698 (73%), Gaps = 1/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
L + K + N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD
Sbjct: 35 LFIFKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKE 94
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ
Sbjct: 95 GQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQ 154
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
+V V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+G+++LNPT + K+
Sbjct: 155 VVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQ 214
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAGT+KA++ VESE+ L E+ +L A+++GH++ ++ I AI ELV G+ + +
Sbjct: 215 SRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWD 274
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W + LI+K+ ++E ++ AY+I KQ R I D+ + I E+ I
Sbjct: 275 WVAPEPNTALINKVKALAEARLGDAYRITEKQSRYAQIDAIKADVIAQ-ITAEDEEISEG 333
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 334 KIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 393
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 394 AVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 453
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 454 AAVMPTLVEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 513
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+K V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 514 EDKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARM 573
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D
Sbjct: 574 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 633
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ + + Q+ RIE +T V++G +Y G V+RL DFGA + I+ K+GL+HI
Sbjct: 634 DGTVKIAAVDKNAVQDVMARIEDITAEVEVGAIYKGKVIRLADFGAFVAIVGNKEGLVHI 693
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 694 SQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 731
>gi|262042723|ref|ZP_06015877.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259039948|gb|EEW41065.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 687
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/668 (55%), Positives = 508/668 (76%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAG+IPG FF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT E+LK S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGTEAAVLMVESEAELLSEDQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ +I I IN+LV+ G+ + +W P ++ L +++ ++E ++ AY+I +
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITD 241
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I + ++L+ E+ T+D N++ IL+ +E ++R ++L RID R
Sbjct: 242 KQERYAQVDVIKSETIATLV-AEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREK 300
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+RD Q ID LMGE TDSF+ HYN
Sbjct: 301 DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGELTDSFLFHYN 360
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP++ G+ G +G PKRREIGHGRLAKR +L V+P +F Y++R+VSEITESNGSSSMA
Sbjct: 361 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEITESNGSSSMA 420
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVP+ VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +G
Sbjct: 421 SVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDG 480
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
I+ALQMDIKI GIT +I+Q+AL AK +IL M+ + + ++S+FAPR+ TIKI+
Sbjct: 481 ISALQMDIKIEGITKEIMQVALNLAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN 540
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + Q A RRIE++T +++
Sbjct: 541 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAQHAIRRIEEITAEIEV 600
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D
Sbjct: 601 GRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 660
Query: 746 RGRIKLSM 753
+GR++LS+
Sbjct: 661 QGRVRLSI 668
>gi|114562173|ref|YP_749686.1| polynucleotide phosphorylase/polyadenylase [Shewanella
frigidimarina NCIMB 400]
gi|122300513|sp|Q086G7.1|PNP_SHEFN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114333466|gb|ABI70848.1| Polyribonucleotide nucleotidyltransferase [Shewanella frigidimarina
NCIMB 400]
Length = 698
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/689 (55%), Positives = 514/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYI+ +Y+LNPT +QL S L+L+VAG
Sbjct: 121 PQIEPDIVSMIGTSAALAISGIPFSGPLGAARVGYINDEYVLNPTVDQLATSSLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+K L E+I+L A+ +GH++ ++ ++AI E G+ +W V+D+
Sbjct: 181 TKAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L++KI ++E + +AYQI+ KQ R + I K + + EN +D +++ +L L
Sbjct: 241 LVAKIKELAEAGMTEAYQIEVKQDRYVQV-GIVKAAAKAALVAENPDVDTREVDNLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + IR +S+ G+LPRTHGSSLFTRG+TQALV TLGT R
Sbjct: 300 EKSVVRGRIISGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YSIR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+ IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I+++D G + IAS
Sbjct: 540 IGTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITAEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLEMNQEVAVKVMEVDRQGRVRLSI 688
>gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. Tucson]
gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. Tucson]
Length = 716
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/699 (53%), Positives = 514/699 (73%), Gaps = 1/699 (0%)
Query: 55 GLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPT 114
G ++K L II+ F+YG + ++IE G +ARQAT++V+VS++DT + TVV K
Sbjct: 2 GTPLIKDIILLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK 61
Query: 115 STYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEI 174
+FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFP+ +LNE+
Sbjct: 62 PGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEV 121
Query: 175 QIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLK 234
Q++ V+SVNPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTT++LK
Sbjct: 122 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELK 181
Query: 235 KSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKV 294
S LDL+VAGT A++ VESE+ L ED +L A++FGH++ ++ I +IN LV G+ K
Sbjct: 182 ISSLDLVVAGTAGAVLMVESEADVLSEDQMLGAVVFGHQQQQVVIESINSLVAEAGKPKW 241
Query: 295 NWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDI 354
+W V + L +++ ++E ++ AY I KQ R I + +L+ + T+D
Sbjct: 242 DWQAPVVNAALHARVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLVQDE-TLDA 300
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
++I IL +E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQA
Sbjct: 301 SEIQDILSSVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 360
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
LV ATLGT+RD Q +D LMGE TDSF+ HYN PP++ G+ G +G PKRREIGHGRLAKR
Sbjct: 361 LVTATLGTARDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 420
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
+L ++P F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K
Sbjct: 421 VLAMMPKLEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 480
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+ + V+LSDILGDED GDMDFKVAG+ +GITALQMDIKI GIT +I+Q+AL +AK
Sbjct: 481 EADNFVVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGAR 540
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+IL M+ + + ++S+FAPR+ TI+I P KI+DVIGKGGS IR LTEET T I+I+
Sbjct: 541 LHILSVMEQAISVPRGDISQFAPRIHTIRISPDKIKDVIGKGGSVIRALTEETDTTIEID 600
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
D+G + IA+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+H
Sbjct: 601 DDGTVKIAATGGEKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVH 660
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
ISQI+ KRV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 661 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 699
>gi|113460848|ref|YP_718915.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
129PT]
gi|170717334|ref|YP_001784444.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
2336]
gi|123031253|sp|Q0I2T0.1|PNP_HAES1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037307|sp|B0UTJ5.1|PNP_HAES2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|112822891|gb|ABI24980.1| polynucleotide phosphorylase [Haemophilus somnus 129PT]
gi|168825463|gb|ACA30834.1| Polyribonucleotide nucleotidyltransferase [Haemophilus somnus 2336]
Length = 713
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/689 (55%), Positives = 508/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTSVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQI+ V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQIIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMNEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ +I I AI E G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQIVIEAIKEFAAEAGKPRWDWTAPEANTI 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI K+ +I+E+++ AY+I KQ R I D+ + + E+ TI I I L
Sbjct: 241 LIEKVKSIAENRLGDAYRITEKQARYEQIDLIKADVITQ-VTAEDETISEGKIIDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +IL RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRILRGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE TD F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ ++
Sbjct: 360 DAQIIDELTGEKTDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLSE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDNFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+T+R+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATVRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + QE RIE +T V++G VY G V RL DFGA + ++ K+GL+HISQI+ +RV
Sbjct: 600 DKNAVQEVMSRIEDITAEVEVGVVYKGKVTRLADFGAFVALVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L Q+V VKVL ID +GRI+L+M
Sbjct: 660 KVSDYLAIGQEVIVKVLEIDRQGRIRLTM 688
>gi|153001784|ref|YP_001367465.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS185]
gi|187611290|sp|A6WRG3.1|PNP_SHEB8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151366402|gb|ABS09402.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS185]
Length = 700
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 514/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYIDG+Y+LNP+ QL S L+L+VAG
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE++ LPE+++L ++++GH++ ++ I AI E G+ +W +D
Sbjct: 181 TAGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDAD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+++I ++E + AY+I+ KQ R + +L+ + N +ID+ +++ +L L
Sbjct: 241 LVAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLAS-NPSIDLREVDNLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + IR +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+ IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S APR+ IKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVAVKVMEVDRQGRVRLSI 688
>gi|217972320|ref|YP_002357071.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS223]
gi|254782734|sp|B8E6N7.1|PNP_SHEB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217497455|gb|ACK45648.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS223]
Length = 699
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 514/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYIDG+Y+LNP+ QL S L+L+VAG
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE++ LPE+++L ++++GH++ ++ I AI E G+ +W +D
Sbjct: 181 TAGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDAD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+++I ++E + AY+I+ KQ R + +L+ + N +ID+ +++ +L L
Sbjct: 241 LVAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLAS-NPSIDLREVDNLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + IR +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+ IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S APR+ IKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVAVKVMEVDRQGRVRLSI 688
>gi|160876518|ref|YP_001555834.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS195]
gi|373950565|ref|ZP_09610526.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS183]
gi|378709723|ref|YP_005274617.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS678]
gi|386323598|ref|YP_006019715.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
BA175]
gi|386342177|ref|YP_006038543.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS117]
gi|418025540|ref|ZP_12664518.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS625]
gi|187611316|sp|A3D7K1.2|PNP_SHEB5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037315|sp|A9KZW6.1|PNP_SHEB9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160862040|gb|ABX50574.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS195]
gi|315268712|gb|ADT95565.1| polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS678]
gi|333817743|gb|AEG10409.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
BA175]
gi|334864578|gb|AEH15049.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS117]
gi|353535152|gb|EHC04716.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS625]
gi|373887165|gb|EHQ16057.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS183]
Length = 700
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 514/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYIDG+Y+LNP+ QL S L+L+VAG
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE++ LPE+++L ++++GH++ ++ I AI E G+ +W +D
Sbjct: 181 TAGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDAD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+++I ++E + AY+I+ KQ R + +L+ + N +ID+ +++ +L L
Sbjct: 241 LVAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLAS-NPSIDLREVDNLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + IR +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+ IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S APR+ IKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVAVKVMEVDRQGRVRLSI 688
>gi|307249785|ref|ZP_07531763.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858200|gb|EFM90278.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 715
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVN
Sbjct: 61 DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPTT + K SHLDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISHLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W +
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+++ ++E +I AY+I KQ R I D+ + L ++ TI I I+ L
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVVAQLT-TQDETISEGAIIDIITAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +
Sbjct: 360 DAQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ + + RIE + V++ +Y G V R+ DFGA + IL GK+GL+HISQI+++RV
Sbjct: 600 DNNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L Q+V VKV+ ID + RI+L+M
Sbjct: 660 RVADYLSVGQEVTVKVVEIDRQNRIRLTM 688
>gi|372285529|dbj|BAL45921.1| polynucleotide phosphorylase/polyadenylase Pnp [Shewanella
livingstonensis]
Length = 701
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/688 (55%), Positives = 515/688 (74%), Gaps = 1/688 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K + +FFPLTV+
Sbjct: 5 NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVN 64
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+P
Sbjct: 65 YQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT 245
QI+PDI S+IG S AL+IS +PF GPLG A+VGYI+ +Y+LNPT +QL S L+L+VAGT
Sbjct: 125 QIEPDIVSMIGTSAALAISGIPFSGPLGAARVGYINDEYVLNPTVDQLATSSLNLVVAGT 184
Query: 246 EKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTL 305
+ A++ VESE+K L E+I+L A+ +GH++ ++ ++AI E G+ +W V+D+ L
Sbjct: 185 KAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQVL 244
Query: 306 ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLE 365
++KI ++E + +AYQI+ KQ R + I K + + EN +D +++ +L LE
Sbjct: 245 VAKIKELAEAGMTEAYQIEVKQDRYVQV-GIVKAAAKAALVAENPDVDTREVDNLLGSLE 303
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
++R +I+ RID R + IR +S+ G+LPRTHGSSLFTRG+TQALV TLGT RD
Sbjct: 304 KSVVRGRIISGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERD 363
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +F
Sbjct: 364 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEF 423
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
YSIR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G++ V+LSDI
Sbjct: 424 PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDEFVVLSDI 483
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT +GITALQMDIKI GIT +I+ IAL +A +IL M +
Sbjct: 484 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI 543
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I+++D G + IAS N
Sbjct: 544 GTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIASSN 603
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 604 GEATKEAIRRIEEITAEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 663
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 664 VSDHLEMNQEVAVKVMEVDRQGRVRLSI 691
>gi|153835027|ref|ZP_01987694.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
gi|148868504|gb|EDL67603.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi HY01]
Length = 710
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/691 (53%), Positives = 510/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELDTSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ + I AINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|187611440|sp|Q9PGQ9.2|PNP_XYLFA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 700
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/692 (54%), Positives = 511/692 (73%), Gaps = 9/692 (1%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA +V+V ++DTV+L TVV+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQANGAVIVKMDDTVLLVTVVAAKTAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPGSFFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S++P+
Sbjct: 63 QEKFYAGGRIPGSFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIAMVMSLDPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI ++IG S ALS++ +PF GP+G AK+GY DG+YILNPT +LKKS L+L+VAGT
Sbjct: 123 IDGDIPAMIGASAALSLAGIPFKGPIGAAKIGYNDGQYILNPTVSELKKSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+IFGH +M+ I I+ L G + +W P K+ L+
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVIFGHREMQKVIQVIDSLTAEAGTQPSDWVPPAKNDALV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-----IDNENLTIDINDINCIL 361
+ + ++ A+ I++K R + D+ L ++ NL + +
Sbjct: 243 IALKEVIGGRLSDAFHIRDKLQRRDAIAAVKDDVIQQLAGRLEVEGWNLAELLKEFG--- 299
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+LE + +R +LD +RID R + +RPI+++ G+LPR HGS LFTRG+TQA+VV TLG
Sbjct: 300 -ELEYRTMRDALLDTKVRIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR GVPKRREIGHGRLA+R +L V+P+
Sbjct: 359 TARDGQVIDAVTGEYKENFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+
Sbjct: 419 LDEFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSEGVSALQMDIKIEGITEEIMRQALQQAKVGRLHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ELS +APRL+TIKI P KIRDVIGKGGSTI+ +T++TGTQIDI D+G I I
Sbjct: 539 DKALAAPRAELSDYAPRLLTIKIHPDKIRDVIGKGGSTIQAITKDTGTQIDIQDDGTIII 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS N+ + +EAK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+
Sbjct: 599 ASVNNAAAREAKCRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D LKE VRVKVL +D +GRI+LS+
Sbjct: 659 RVERVGDKLKEGDVVRVKVLEVDKQGRIRLSI 690
>gi|163802308|ref|ZP_02196202.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
gi|159173837|gb|EDP58651.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. AND4]
Length = 710
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQA+++V+V+++DT + +VV K+ + +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQASAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDSFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGSARVGHIDGQLVLNPSNTELDASKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L A+++GH++ ++ I AINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVVIKAINEFKSEVATPAWDWVAPQEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ D +I+ I +
Sbjct: 241 TALVNKIAELAEAKLDQAYQITEKMARYDRIHEIAGEVNDVLL-AEDPEADTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D+F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTQTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAIAGARDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|126175434|ref|YP_001051583.1| polynucleotide phosphorylase/polyadenylase [Shewanella baltica
OS155]
gi|125998639|gb|ABN62714.1| Polyribonucleotide nucleotidyltransferase [Shewanella baltica
OS155]
Length = 703
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/688 (54%), Positives = 514/688 (74%), Gaps = 1/688 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV+
Sbjct: 5 NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTVN 64
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+P
Sbjct: 65 YQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT 245
QI+PDI S+IG S AL+IS +PF GPLG A+VGYIDG+Y+LNP+ QL S L+L+VAGT
Sbjct: 125 QIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAGT 184
Query: 246 EKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTL 305
A++ VESE++ LPE+++L ++++GH++ ++ I AI E G+ +W +D L
Sbjct: 185 AGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDADL 244
Query: 306 ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLE 365
+++I ++E + AY+I+ KQ R + +L+ + N +ID+ +++ +L LE
Sbjct: 245 VAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLAS-NPSIDLREVDNLLGSLE 303
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
K++R +I+ RID R + IR +S+ G+LPRTHGS+LFTRG+TQALV TLGT RD
Sbjct: 304 KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD 363
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +F
Sbjct: 364 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEF 423
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDI
Sbjct: 424 PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 483
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT +GITALQMDIKI GIT +I+ IAL +A +IL M +
Sbjct: 484 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI 543
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
++++S APR+ IKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS N
Sbjct: 544 GSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN 603
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 604 GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN 663
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 664 VSDHLELNQEVAVKVMEVDRQGRVRLSI 691
>gi|424033913|ref|ZP_17773324.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HENC-01]
gi|424037656|ref|ZP_17776397.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HENC-02]
gi|408874026|gb|EKM13209.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HENC-01]
gi|408895294|gb|EKM31732.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HENC-02]
Length = 710
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/691 (53%), Positives = 511/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ + I AINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|323491486|ref|ZP_08096669.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
20546]
gi|323314270|gb|EGA67351.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
20546]
Length = 710
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/691 (53%), Positives = 510/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L A+++GH++ + I+AINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQTVISAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALTTKIAELAEAKLVEAYQITEKMARYDRIHTIAAEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|414561873|ref|NP_716833.2| polyribonucleotide nucleotidyltransferase PnpA [Shewanella
oneidensis MR-1]
gi|187611309|sp|Q8EHL1.2|PNP_SHEON RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|410519620|gb|AAN54278.2| polyribonucleotide nucleotidyltransferase PnpA [Shewanella
oneidensis MR-1]
Length = 699
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 516/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I+PDI S+IG S AL+IS +PF GPLG A+VGYI+G+Y+LNPT +Q+ S L+L+VAG
Sbjct: 121 PEIEPDIISMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ LPE+++L ++++GH++ ++ I AI E G+ +W V+D+
Sbjct: 181 TESAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPVEDEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+++I ++E +AYQI+ KQ R + K + N +D+ +++ +L L
Sbjct: 241 LVAQIKELAEAGFIEAYQIQVKQER-YAQVAVVKAAAKEALLAANPDVDLREVDNLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +IL RID R + +R +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 300 EKKVVRGRILRGMPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVTVKVMEVDRQGRVRLSI 688
>gi|421491575|ref|ZP_15938938.1| PNP [Morganella morganii subsp. morganii KT]
gi|455737323|ref|YP_007503589.1| Polyribonucleotide nucleotidyltransferase [Morganella morganii
subsp. morganii KT]
gi|400194009|gb|EJO27142.1| PNP [Morganella morganii subsp. morganii KT]
gi|455418886|gb|AGG29216.1| Polyribonucleotide nucleotidyltransferase [Morganella morganii
subsp. morganii KT]
Length = 718
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/699 (53%), Positives = 520/699 (74%), Gaps = 12/699 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+ F+YG + ++IE G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLNPTIRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+P E ET+I+RLIDRP+RPLFPEG+LNE+QI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEVQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S +PF GP+G A+VG+I+ +Y+LNPTT++L S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGIPFNGPIGAARVGFINDQYVLNPTTDELAVSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGHE+ +I I IN L G+ K +W P ++
Sbjct: 181 GTKGAVLMVESEAQLLTEEQMLGAVVFGHEQQQIVIENINALAAEAGKPKWDWQPEPVNQ 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQ--------IRDLTFKNISKDIYSSLIDNENLTIDI- 354
TL ++ +SE + AY+I KQ I+D T + + + E LT ++
Sbjct: 241 TLRDRVAELSEKALGDAYRITEKQDRYAQVDIIKDATISALEAEFAAR---GEELTGELK 297
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
++I+ IL +E ++R ++L+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA
Sbjct: 298 HEISDILAAVEKSVVRTRVLNGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQA 357
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
LV ATLGT+RD Q +D +MGE TD+F+ HYN PP+ G+ G +G PKRREIGHGRLAKR
Sbjct: 358 LVTATLGTARDAQTLDQVMGEITDTFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRG 417
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
+L V+P+ +F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K
Sbjct: 418 VLAVMPSQEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVK 477
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+ +K V+LSDILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK
Sbjct: 478 EDDKFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQAKGAR 537
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+IL M+ + + ++S+FAPR+ TI+I+P KI+DVIGKGGS IR LTEETGT I+I
Sbjct: 538 LHILGVMEQAINSPRADISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIE 597
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
D+G + IA+ + + A RRIE++T V++G++Y G V+R+ DFGA + I GK+GL+H
Sbjct: 598 DDGTVKIAATDGDKAKMAIRRIEEITAEVEVGRIYNGKVVRIVDFGAFVAIGGGKEGLVH 657
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
ISQI+ KRV ++D+L+ Q+V VKVL ID +GRI+LSM
Sbjct: 658 ISQIADKRVEKVSDYLEMGQEVPVKVLEIDRQGRIRLSM 696
>gi|187611313|sp|Q12QG9.2|PNP_SHEDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 698
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/689 (55%), Positives = 515/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K + +FFPLTV
Sbjct: 1 MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI S+IG S AL+IS +PF GPLG A+VGYI+G+Y+LNPT +QL S L+L+VAG
Sbjct: 121 PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+K L E+I+L A+ +GH++ ++ ++AI E G+ +W V+D+
Sbjct: 181 TKAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L++KI ++E + AYQI+ KQ R + + ++L+ EN +D +++ +L L
Sbjct: 241 LVAKIKELAEAGMTDAYQIEVKQDRYVQVGVVKAAAKAALV-AENPDVDTREVDNLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + IR +++ G+LPRTHGSSLFTRG+TQALV TLGT R
Sbjct: 300 EKNVVRSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YSIR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+ IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I+++D+G + IAS
Sbjct: 540 IGTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G+VY G V+R+ DFGA I IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITAEVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ V+VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLEMNQDVKVKVMEVDRQGRVRLSI 688
>gi|91228271|ref|ZP_01262207.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
12G01]
gi|269966864|ref|ZP_06180937.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
40B]
gi|91188148|gb|EAS74450.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
12G01]
gi|269828531|gb|EEZ82792.1| polyribonucleotide nucleotidyltransferase [Vibrio alginolyticus
40B]
Length = 711
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/691 (53%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ + +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L A+++GH++ ++AI AINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVAIQAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +KI +++E K+ +AYQI K R I+ ++ L+ E+ D +I+ I +
Sbjct: 241 TALKNKIADLAEAKLVEAYQITEKMARYDRIHEIAAEVNEVLL-AEDPEADTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R +I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|261868717|ref|YP_003256639.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769978|ref|ZP_11484593.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416076363|ref|ZP_11585444.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416081081|ref|ZP_11586355.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444337102|ref|ZP_21151126.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|261414049|gb|ACX83420.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348004967|gb|EGY45457.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348011104|gb|EGY51089.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348657011|gb|EGY74608.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443547571|gb|ELT57042.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 743
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/698 (54%), Positives = 511/698 (73%), Gaps = 1/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
L + K + N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD
Sbjct: 26 LFICKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKE 85
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ
Sbjct: 86 GQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQ 145
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
+V V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+G+++LNPT + K+
Sbjct: 146 VVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQ 205
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAGT+KA++ VESE+ L E+ +L A+++GH++ ++ I AI ELV G+ + +
Sbjct: 206 SRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWD 265
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W + LI+K+ ++E ++ AY+I KQ R I D+ + I E+ +
Sbjct: 266 WVAPEPNTALINKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQ-ITAEDEEVSEG 324
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 325 KIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 384
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 385 AVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 444
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 445 AAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 504
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+K V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 505 EDKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARM 564
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D
Sbjct: 565 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 624
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ + + Q+ RIE +T V++G Y G V+RL DFGA + I+ K+GL+HI
Sbjct: 625 DGTVKIAAVDKNAVQDVMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHI 684
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 685 SQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 722
>gi|343512053|ref|ZP_08749199.1| polynucleotide phosphorylase/polyadenylase [Vibrio scophthalmi LMG
19158]
gi|343514914|ref|ZP_08751979.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. N418]
gi|342796474|gb|EGU32154.1| polynucleotide phosphorylase/polyadenylase [Vibrio scophthalmi LMG
19158]
gi|342799280|gb|EGU34855.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. N418]
Length = 711
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/692 (54%), Positives = 508/692 (73%), Gaps = 4/692 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+QI+ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQIIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PD+ ++IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPNVQPDMVTMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSMTELATSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A++FGHE+ ++ INAINE V NW+ +
Sbjct: 181 SGTENAVLMVESEADNLTEEEMLSAVVFGHEQQQVVINAINEFAAEVATPAWNWEAPAVN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCIL 361
L + + +++E ++ AYQI K R I D+ ++L+ +ENL +I +L
Sbjct: 241 TELKALVADLAETRLADAYQITEKMARYEQVGAIKNDVVAALLAQDENLAE--REIRGML 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE K++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA+V ATLG
Sbjct: 299 GSLEKKVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 359 TQRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+
Sbjct: 419 VEEFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + E+S+FAPR+ +KI KI+DVIGKGG+ IR LTEETGT I+I D+G I I
Sbjct: 539 DEAISGAREEISEFAPRIYMMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ K
Sbjct: 599 AATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 659 RVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|269103403|ref|ZP_06156100.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163301|gb|EEZ41797.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 706
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/689 (53%), Positives = 517/689 (75%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ +++E G +ARQAT++V+ S++DT + +VV K+ +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKEAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VG+I+ +++LNP+ +L++S LDL+VAG
Sbjct: 121 PNVSPDIITMIGTSAALAISGIPFNGPIGAARVGFINDQFVLNPSNVELEESRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ +L E+ +L A++FGH++ + INAINE V +W ++
Sbjct: 181 TKDAVLMVESEADRLSEEQMLQAVVFGHDQQQTVINAINEFAAEVATPAWDWIAPEENTV 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +KI ++E K+ +AYQI K R I+ ++ L+ +E+L ++ +++ I +DL
Sbjct: 241 LKNKIAELAEAKLVEAYQITEKMARYDRIHEIADEVNEVLL-SEDLEVNTKEVHTIFHDL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R+ I+ RID R V+ +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKTVVRRSIIAGNPRIDGREVDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ ++
Sbjct: 360 DAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSIDE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARMHILSVMDNA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S+FAPR+ T+KI+P KI+DVIGKGG+ IR LTEETGT I+I D+G + IA+
Sbjct: 540 INAPRDDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + +EA RRIE++T V++G++YTG V R+ DFGA + ++ K+GL+HISQIS +RV
Sbjct: 600 DGLQAKEAIRRIEEITADVEVGRIYTGKVTRIVDFGAFVSVIGTKEGLVHISQISQERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+LKE Q+V VKVL ID +GRI+LSM
Sbjct: 660 KVSDYLKEGQEVPVKVLEIDRQGRIRLSM 688
>gi|37680881|ref|NP_935490.1| polynucleotide phosphorylase/polyadenylase [Vibrio vulnificus
YJ016]
gi|37199630|dbj|BAC95461.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus YJ016]
Length = 725
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/695 (53%), Positives = 513/695 (73%), Gaps = 2/695 (0%)
Query: 60 KGNFLFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
+G +F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +
Sbjct: 14 QGITMFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQD 73
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFPEG+ NE+Q++
Sbjct: 74 FFPLTVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIA 133
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
V+SVNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S L
Sbjct: 134 TVVSVNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRL 193
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGTE A++ VESE+ L E+ +L+A++FGH++ + I AINE V NW
Sbjct: 194 DLVVAGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVA 253
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDIN 358
+ L K+ +++E K+ +AY+I K R I+ ++ +++I E+ D +I+
Sbjct: 254 PEANTALNEKVADLAEAKLVEAYKITEKMARYDRIHEIAAEV-NAVILAEDPEADAKEIH 312
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
I +DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV A
Sbjct: 313 TIFHDLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTA 372
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V
Sbjct: 373 TLGTQRDAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAV 432
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
+P+ ++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+
Sbjct: 433 MPSIDEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDD 492
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
V+LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL
Sbjct: 493 FVVLSDILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHIL 552
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
M + ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G
Sbjct: 553 SVMDQAISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGT 612
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
I IA+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI
Sbjct: 613 IKIAATEGAAAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQI 672
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ KRV ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 673 ADKRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 707
>gi|336317257|ref|ZP_08572124.1| polyribonucleotide nucleotidyltransferase [Rheinheimera sp. A13L]
gi|335878557|gb|EGM76489.1| polyribonucleotide nucleotidyltransferase [Rheinheimera sp. A13L]
Length = 710
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/691 (54%), Positives = 501/691 (72%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF++G + I++E G IARQA ++VL S+ DT +L TVV+ K P +FFPLTV
Sbjct: 1 MNPIVKSFQFGQHTITLETGVIARQADAAVLASMGDTSVLVTVVAKKQPKPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAGRIPG FFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+SV
Sbjct: 61 NYQEKTYAAGRIPGGFFKREGRPSEGETLTSRLIDRPIRPLFPEGFTNEVQVIATVVSVQ 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PDI SII S AL+IS +PF GPLG A+VGY++ +Y+LNP+ +LK S LDL+VAG
Sbjct: 121 PEIQPDIISIIATSAALAISGIPFSGPLGAARVGYVNSQYVLNPSETELKDSKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ L E+++L A++FGH++M+ INAINE + NW VK+ T
Sbjct: 181 TANAVLMVESEAGVLSEEVMLGAVVFGHDQMQTVINAINEFAAEAAKPVWNWVAPVKNAT 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
+ SKI ++ + +AY+I K R I ++++ + E + + N I +
Sbjct: 241 VTSKIAELATAPVGEAYRITEKAKRYEAIGAIKAEVFAQIKAELAEGEGFNETEANEIFH 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+LES+I+R +I+ RID R IR +S+ TG+LPRTHGS+LFTRG+TQALV TLGT
Sbjct: 301 NLESQIVRSRIIKGEPRIDGRDNEMIRALSVMTGLLPRTHGSALFTRGETQALVTCTLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L+ E TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 361 ARDAQTVDDLLSEKTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVAAVMPDF 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
N F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+L
Sbjct: 421 NDFPYTVRMVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEGNDFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITREIMQIALKQAKAARIHILNVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ELS+ APR+ T+KI+P KIRDVIGKGG+ IR +TEE+GT I+I D+G + IA
Sbjct: 541 QAISTHREELSEHAPRIYTLKINPEKIRDVIGKGGAVIRQITEESGTTIEIEDDGTVKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ NS + A RIE +T +++G VY G V+R+ DFGA + +L GKDGL+HISQIS +R
Sbjct: 601 ATNSQAANIAINRIEAITAEIEVGAVYQGEVVRIVDFGAFVNVLPGKDGLVHISQISDER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V+ + D L QKV VKV+ +D +GR++LS+
Sbjct: 661 VSNVADHLVIGQKVAVKVMEVDKQGRVRLSI 691
>gi|27365068|ref|NP_760596.1| polynucleotide phosphorylase [Vibrio vulnificus CMCP6]
gi|320155451|ref|YP_004187830.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
MO6-24/O]
gi|81448563|sp|Q8DBU9.1|PNP_VIBVU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611443|sp|Q7MI20.2|PNP_VIBVY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27361214|gb|AAO10123.1| Polyribonucleotide nucleotidyltransferase [Vibrio vulnificus CMCP6]
gi|319930763|gb|ADV85627.1| polyribonucleotide nucleotidyltransferase [Vibrio vulnificus
MO6-24/O]
Length = 708
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 511/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVPGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFNNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELNASRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ + I AINE V NW +
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFAAEVATPSWNWVAPEAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L K+ +++E K+ +AY+I K R I+ ++ +++I E+ D +I+ I +
Sbjct: 241 TALNEKVADLAEAKLVEAYKITEKMARYDRIHEIAAEV-NAVILAEDPEADAKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSI 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTSTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|340783203|ref|YP_004749810.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
SM-1]
gi|340557354|gb|AEK59108.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
SM-1]
Length = 692
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/684 (54%), Positives = 495/684 (72%), Gaps = 2/684 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
K +G ++ +E G +ARQA +VLV++ +T++L T V ++ +FFPLTV+Y EK
Sbjct: 6 KEVDFGGQRLCLETGRMARQADGAVLVTLGETMVLVTAVGRRELKPGQDFFPLTVNYQEK 65
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
AYAAGRIPG FFKREG+P+E+ET+ SRLIDRP+RPLFP+G+LNE+Q++ VLSV+ + DP
Sbjct: 66 AYAAGRIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVDQENDP 125
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI ++IG S AL+IS +PF GP+G A+VGY+DG ++LNP+ L +S LDL+VAGT +A+
Sbjct: 126 DIPAMIGASAALAISGIPFQGPIGAARVGYVDGDFVLNPSFSALARSQLDLVVAGTRQAV 185
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
+ VESE+++LPE +L+A++FGHE + I I EL G+ W D L I
Sbjct: 186 LMVESEAQELPEATMLSAVMFGHESFQPVIACIEELAAEAGKTPWAWQAPELDPALQEAI 245
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKII 369
+ +R+AY + KQ R I + + D+ + ++ LE++I+
Sbjct: 246 TQAALAPLREAYGLVEKQARSKRLDEIRSSLLEQFGGSAGEQADV--VRGVVKKLETQIV 303
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ++LD RID R +RPI I GI+PRTHGS+LFTRG+TQALV+ATLGT DEQ +
Sbjct: 304 RGRVLDGAPRIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQIV 363
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DAL GE D FMLHYN PPF+TG+ G +G PKRREIGHGRLAKRA+ VLP+ ++F YS+
Sbjct: 364 DALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAVAAVLPSESEFPYSL 423
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R+VSEI ESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIKDGE+ +L+DILGDE
Sbjct: 424 RIVSEILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKDGERYAVLTDILGDE 483
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NG+TALQMDIKI GIT +I+ AL +A G +IL KM + + +
Sbjct: 484 DHLGDMDFKVAGTENGVTALQMDIKIDGITREIMATALEQAHAGRLHILSKMNAVLAQGR 543
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
++LS +APR+I+++I P +IRDVIG GG IR LTEETG IDI D+G +TIAS N +G
Sbjct: 544 SQLSGYAPRIISMRIHPDRIRDVIGPGGKVIRALTEETGASIDIQDDGTVTIASVNGEAG 603
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ A+RRIE LT V++G +Y G V ++ DFGA + IL G+DGLLHISQIS++RVN + D+
Sbjct: 604 EAARRRIELLTADVEVGMIYDGKVAKIMDFGAFVTILPGRDGLLHISQISTERVNDVHDY 663
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE Q VRVKVL +D +G+IKLSM
Sbjct: 664 VKEGQSVRVKVLEVDRQGKIKLSM 687
>gi|342904999|ref|ZP_08726793.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21621]
gi|341952098|gb|EGT78639.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21621]
Length = 709
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W D
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQLDTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ ++
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLSE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G VY G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAVYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|156935691|ref|YP_001439607.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
ATCC BAA-894]
gi|389842510|ref|YP_006344594.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
ES15]
gi|156533945|gb|ABU78771.1| hypothetical protein ESA_03557 [Cronobacter sakazakii ATCC BAA-894]
gi|387852986|gb|AFK01084.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
ES15]
Length = 690
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/670 (54%), Positives = 504/670 (75%), Gaps = 2/670 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLT++Y E+ YAAGRIPG FF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ ++ I IN+LV+ G+ + +W P ++ L +++ ++E ++ AY+I +
Sbjct: 182 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEALNARVKALAESRLSDAYRITD 241
Query: 326 KQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNR 383
KQ R I D+ ++L E +D N++ IL+ +E ++R ++L RID R
Sbjct: 242 KQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIEKNVVRSRVLAGEPRIDGR 301
Query: 384 GVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLH 443
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT RD Q ID LMGE TD F+ H
Sbjct: 302 EKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTDRFLFH 361
Query: 444 YNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSS 503
YN PP++ G+ G +G PKRREIGHGRLAKR +L V+P ++F Y++R+VSEITESNGSSS
Sbjct: 362 YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSSS 421
Query: 504 MASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTV 563
MASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LSDILGDED GDMDFKVAG+
Sbjct: 422 MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKVAGSR 481
Query: 564 NGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIK 623
GITALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIK
Sbjct: 482 EGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIK 541
Query: 624 IDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESV 683
I P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +
Sbjct: 542 ISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 601
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGI 743
++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +
Sbjct: 602 EVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 661
Query: 744 DDRGRIKLSM 753
D +GR++LS+
Sbjct: 662 DRQGRVRLSI 671
>gi|416106827|ref|ZP_11590076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348006029|gb|EGY46495.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 743
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/698 (54%), Positives = 511/698 (73%), Gaps = 1/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
L + K + N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD
Sbjct: 26 LFICKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKE 85
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ
Sbjct: 86 GQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQ 145
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
+V V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+G+++LNPT + K+
Sbjct: 146 VVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQ 205
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAGT+KA++ VESE+ L E+ +L A+++GH++ ++ I AI ELV G+ + +
Sbjct: 206 SRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWD 265
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W + LI+K+ ++E ++ AY+I KQ R I D+ + I E+ +
Sbjct: 266 WVAPEPNTALINKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQ-ITAEDEEVSEG 324
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 325 KIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 384
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 385 AVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 444
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 445 AAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 504
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+K V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 505 EDKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARM 564
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D
Sbjct: 565 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 624
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ + + Q+ RIE +T V++G Y G V+RL DFGA + I+ K+GL+HI
Sbjct: 625 DGTVKIAAVDKNAVQDVMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHI 684
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 685 SQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 722
>gi|255019829|ref|ZP_05291905.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
ATCC 51756]
gi|254970758|gb|EET28244.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus caldus
ATCC 51756]
Length = 692
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/684 (54%), Positives = 495/684 (72%), Gaps = 2/684 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
K +G ++ +E G +ARQA +VLV++ +T++L T V ++ +FFPLTV+Y EK
Sbjct: 6 KEVDFGGQRLYLETGRMARQADGAVLVTLGETMVLVTAVGRRELKPGQDFFPLTVNYQEK 65
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
AYAAGRIPG FFKREG+P+E+ET+ SRLIDRP+RPLFP+G+LNE+Q++ VLSV+ + DP
Sbjct: 66 AYAAGRIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFLNEVQVIATVLSVDQENDP 125
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI ++IG S AL+IS +PF GP+G A+VGY+DG ++LNP+ L +S LDL+VAGT +A+
Sbjct: 126 DIPAMIGASAALAISGIPFQGPIGAARVGYVDGDFVLNPSFSALARSQLDLVVAGTRQAV 185
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
+ VESE+++LPE +L+A++FGHE + I I EL G+ W D L I
Sbjct: 186 LMVESEAQELPEATMLSAVMFGHESFQPVIACIEELAAEAGKTPWAWQAPELDPALQEAI 245
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKII 369
+ +R+AY + KQ R I + + D+ + ++ LE++I+
Sbjct: 246 TQAALAPLREAYGLVEKQARSKRLDEIRSSLLEQFGGSAGEQADV--VRGVVKKLETQIV 303
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ++LD RID R +RPI I GI+PRTHGS+LFTRG+TQALV+ATLGT DEQ +
Sbjct: 304 RGRVLDGAPRIDGRDRTTVRPIEIEVGIMPRTHGSALFTRGETQALVIATLGTKGDEQIV 363
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DAL GE D FMLHYN PPF+TG+ G +G PKRREIGHGRLAKRA+ VLP+ ++F YS+
Sbjct: 364 DALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAVAAVLPSESEFPYSL 423
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R+VSEI ESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIKDGE+ +L+DILGDE
Sbjct: 424 RIVSEILESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKDGERYAVLTDILGDE 483
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NG+TALQMDIKI GIT +I+ AL +A G +IL KM + + +
Sbjct: 484 DHLGDMDFKVAGTENGVTALQMDIKIDGITREIMATALEQAHAGRLHILSKMNAVLAQGR 543
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
++LS +APR+I+++I P +IRDVIG GG IR LTEETG IDI D+G +TIAS N +G
Sbjct: 544 SQLSGYAPRIISMRIHPDRIRDVIGPGGKVIRALTEETGASIDIQDDGTVTIASVNGEAG 603
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ A+RRIE LT V++G +Y G V ++ DFGA + IL G+DGLLHISQIS++RVN + D+
Sbjct: 604 EAARRRIELLTADVEVGMIYDGKVAKIMDFGAFVTILPGRDGLLHISQISTERVNDVHDY 663
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE Q VRVKVL +D +G+IKLSM
Sbjct: 664 VKEGQSVRVKVLEVDRQGKIKLSM 687
>gi|444345965|ref|ZP_21153963.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443542204|gb|ELT52563.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 752
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/698 (54%), Positives = 511/698 (73%), Gaps = 1/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
L + K + N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD
Sbjct: 35 LFICKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKE 94
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ
Sbjct: 95 GQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQ 154
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
+V V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+G+++LNPT + K+
Sbjct: 155 VVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQ 214
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAGT+KA++ VESE+ L E+ +L A+++GH++ ++ I AI ELV G+ + +
Sbjct: 215 SRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWD 274
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W + LI+K+ ++E ++ AY+I KQ R I D+ + I E+ +
Sbjct: 275 WVAPEPNTALINKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQ-ITAEDEEVSEG 333
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 334 KIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 393
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 394 AVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 453
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 454 AAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 513
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+K V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 514 EDKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARM 573
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D
Sbjct: 574 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 633
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ + + Q+ RIE +T V++G Y G V+RL DFGA + I+ K+GL+HI
Sbjct: 634 DGTVKIAAVDKNAVQDVMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHI 693
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 694 SQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 731
>gi|91792379|ref|YP_562030.1| polynucleotide phosphorylase/polyadenylase [Shewanella
denitrificans OS217]
gi|91714381|gb|ABE54307.1| Polyribonucleotide nucleotidyltransferase [Shewanella denitrificans
OS217]
Length = 701
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/688 (55%), Positives = 515/688 (74%), Gaps = 1/688 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K + +FFPLTV+
Sbjct: 5 NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVN 64
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+P
Sbjct: 65 YQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 124
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT 245
QI+PDI S+IG S AL+IS +PF GPLG A+VGYI+G+Y+LNPT +QL S L+L+VAGT
Sbjct: 125 QIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYLLNPTVDQLATSSLNLVVAGT 184
Query: 246 EKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTL 305
+ A++ VESE+K L E+I+L A+ +GH++ ++ ++AI E G+ +W V+D+ L
Sbjct: 185 KAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQAL 244
Query: 306 ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLE 365
++KI ++E + AYQI+ KQ R + + ++L+ EN +D +++ +L LE
Sbjct: 245 VAKIKELAEAGMTDAYQIEVKQDRYVQVGVVKAAAKAALV-AENPDVDTREVDNLLGSLE 303
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
++R +I+ RID R + IR +++ G+LPRTHGSSLFTRG+TQALV TLGT RD
Sbjct: 304 KNVVRSRIIAGKPRIDGREPDMIRALNVLAGVLPRTHGSSLFTRGETQALVTCTLGTERD 363
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P +F
Sbjct: 364 AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPTAEEF 423
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
YSIR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDI
Sbjct: 424 PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI 483
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT +GITALQMDIKI GIT +I+ IAL +A +IL M +
Sbjct: 484 LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI 543
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I+++D+G + IAS N
Sbjct: 544 GTHRGDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDDGTVKIASSN 603
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA RRIE++T V++G+VY G V+R+ DFGA I IL GKDGL+HISQIS +RV
Sbjct: 604 GEATKEAIRRIEEITAEVEVGRVYNGKVIRIVDFGAFINILPGKDGLVHISQISDERVAN 663
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ V+VKV+ +D +GR++LS+
Sbjct: 664 VSDHLEMNQDVKVKVMEVDRQGRVRLSI 691
>gi|350532300|ref|ZP_08911241.1| polynucleotide phosphorylase/polyadenylase [Vibrio rotiferianus
DAT722]
Length = 710
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG++DG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHVDGQLVLNPSNTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A++FGH++ + I AINE V +W ++
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|429089307|ref|ZP_19152039.1| Polyribonucleotide nucleotidyltransferase [Cronobacter universalis
NCTC 9529]
gi|426509110|emb|CCK17151.1| Polyribonucleotide nucleotidyltransferase [Cronobacter universalis
NCTC 9529]
Length = 689
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/670 (54%), Positives = 504/670 (75%), Gaps = 2/670 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLT++Y E+ YAAGRIPG FF+REG
Sbjct: 1 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 60
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 61 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 120
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 121 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 180
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ ++ I IN+LV+ G+ + +W P ++ L +++ ++E ++ AY+I +
Sbjct: 181 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEALNARVKALAESRLSDAYRITD 240
Query: 326 KQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNR 383
KQ R I D+ ++L E +D N++ IL+ +E ++R ++L RID R
Sbjct: 241 KQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIEKNVVRSRVLAGEPRIDGR 300
Query: 384 GVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLH 443
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT RD Q ID LMGE TD F+ H
Sbjct: 301 EKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTDRFLFH 360
Query: 444 YNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSS 503
YN PP++ G+ G +G PKRREIGHGRLAKR +L V+P ++F Y++R+VSEITESNGSSS
Sbjct: 361 YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSSS 420
Query: 504 MASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTV 563
MASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LSDILGDED GDMDFKVAG+
Sbjct: 421 MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKVAGSR 480
Query: 564 NGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIK 623
GITALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIK
Sbjct: 481 EGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIK 540
Query: 624 IDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESV 683
I P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +
Sbjct: 541 ISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 600
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGI 743
++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +
Sbjct: 601 EVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 660
Query: 744 DDRGRIKLSM 753
D +GR++LS+
Sbjct: 661 DRQGRVRLSI 670
>gi|386389873|ref|ZP_10074672.1| polyribonucleotide nucleotidyltransferase [Haemophilus
paraphrohaemolyticus HK411]
gi|385694418|gb|EIG25023.1| polyribonucleotide nucleotidyltransferase [Haemophilus
paraphrohaemolyticus HK411]
Length = 707
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/686 (54%), Positives = 509/686 (74%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I++ FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTVDY
Sbjct: 4 IVRQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+++RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSESETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPTT + K S LDL+VAGT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKLSRLDLVVAGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W + LI+
Sbjct: 184 AVLMVESEADILTEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E +I AY+I KQ R I ++ ++L E+ T+ I I+ LES+
Sbjct: 244 KVKALAESRIGDAYRITEKQARYEQIDTIKAEVIATLT-AEDETVSEGAIIDIITALESQ 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT RD Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P+ +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILNVMEQAIPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+ ++
Sbjct: 543 PRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE++ V++ VY G V R+ DFGA + IL GK+GL+HISQI+ +RV +
Sbjct: 603 AAKAVMARIEEIVAEVEVNAVYKGKVTRVVDFGAFVSILGGKEGLVHISQITDERVERVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q+V VKV+ ID + RI+L+M
Sbjct: 663 DYLSVGQEVMVKVVEIDRQNRIRLTM 688
>gi|375266546|ref|YP_005023989.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. EJY3]
gi|369841866|gb|AEX23010.1| polynucleotide phosphorylase/polyadenylase [Vibrio sp. EJY3]
Length = 711
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/691 (53%), Positives = 512/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ + +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELDASRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L A+++GH++ ++ INAINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVVINAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +KI ++E K+ +AYQI K R I+ ++ L+ E+ D +I+ I +
Sbjct: 241 TVLKNKIAELAEAKLVEAYQITEKMARYDRIHAIAAEVNEVLL-AEDPEADTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTGILPRTHGS+LFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGILPRTHGSALFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|423205509|ref|ZP_17192065.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC34]
gi|404624050|gb|EKB20895.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC34]
Length = 713
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/689 (53%), Positives = 503/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLTV
Sbjct: 1 MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q+V V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VGY++G+Y+LNPTT +L +S LDL+VAG
Sbjct: 121 PAVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ L E+++L A+++GHE+M+ INAINE VG K +W P ++
Sbjct: 181 TANAVLMVESEAAILSEEVMLGAVVYGHEQMQTVINAINEFAAAVGTKPWDWTPPAVNEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +K+ ++ ++ +AY+I K +R T I + +I + + D I + L
Sbjct: 241 LKAKVAELASAELGEAYRITEKAVRYETIAAIKGRVVEQVIAS-GVEEDAKKIGEEFHSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +++ RID R IR +S+ TG+LPR HGS+LFTRG+TQA+VVATLGT R
Sbjct: 300 ESRIVRGRVVRGEPRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L G D FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQNIDELTGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A+ +IL+ M
Sbjct: 480 ILGDEDHLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+++D+G + I++
Sbjct: 540 IQAPRAQISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + EA RRIE +T +++ ++Y G V+RL DFGA + IL GKDGL+HISQI+ RV
Sbjct: 600 ANEAAMEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQ 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D L V+VKVL +D +GR++LS+
Sbjct: 660 NVADHLTIGDVVKVKVLEVDRQGRVRLSI 688
>gi|343508532|ref|ZP_08745868.1| polynucleotide phosphorylase/polyadenylase [Vibrio ichthyoenteri
ATCC 700023]
gi|342793240|gb|EGU29044.1| polynucleotide phosphorylase/polyadenylase [Vibrio ichthyoenteri
ATCC 700023]
Length = 711
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/692 (54%), Positives = 508/692 (73%), Gaps = 4/692 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+QI+ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQIIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PD+ ++IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPNVQPDMVTMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSMTELATSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A++FGH++ ++ INAINE V NW+ +
Sbjct: 181 SGTENAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFAAEVATPAWNWEAPAVN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCIL 361
L + + +++E ++ AYQI K R I D+ ++L+ +ENL +I +L
Sbjct: 241 TELKALVADLAETRLADAYQITEKMARYEQVGAIKNDVVAALLAQDENLAE--REIRGML 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE K++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA+V ATLG
Sbjct: 299 GSLEKKVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 359 TQRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+
Sbjct: 419 VEEFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + E+S+FAPR+ +KI KI+DVIGKGG+ IR LTEETGT I+I D+G I I
Sbjct: 539 DEAISGAREEISEFAPRIYMMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + +EA RRIE++T V++G++YTG V RL DFGA + IL GKDGL+HISQI+ K
Sbjct: 599 AATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 659 RVEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|387769310|ref|ZP_10125574.1| polyribonucleotide nucleotidyltransferase [Pasteurella bettyae CCUG
2042]
gi|386906943|gb|EIJ71664.1| polyribonucleotide nucleotidyltransferase [Pasteurella bettyae CCUG
2042]
Length = 712
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/689 (54%), Positives = 508/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTV
Sbjct: 1 MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+LNEIQI+ V+SVN
Sbjct: 61 DYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAG
Sbjct: 121 PQITPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMTEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E G+ + +W D
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAAEAGKARWDWVAPEPDTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+++ I+E ++ AY+I KQ+R + ++ + I EN + I I L
Sbjct: 241 LINQVKAIAESRLGDAYRITEKQVRYEQIDALKAEVIAQ-ITAENEEVSEGKIIDIFTSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQ+L VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q +D L GE D+F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR + V+P+ ++
Sbjct: 360 DAQILDELTGERQDTFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVAAVMPSISE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ +K V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEEDKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 540 ISAPRAEISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + ++ RIE++T V+ G +YTG V RL DFGA + IL K+GL+HISQI+ +RV
Sbjct: 600 DGSAVKQVMARIEEITAEVETGAIYTGKVTRLADFGAFVAILGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L Q+V+VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLAVGQEVQVKVVEIDRQGRIRLTM 688
>gi|254229311|ref|ZP_04922728.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
gi|262393386|ref|YP_003285240.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
gi|451972561|ref|ZP_21925767.1| 3' exoribonuclease [Vibrio alginolyticus E0666]
gi|151938119|gb|EDN56960.1| 3' exoribonuclease family, domain 2 [Vibrio sp. Ex25]
gi|262336980|gb|ACY50775.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. Ex25]
gi|451931501|gb|EMD79189.1| 3' exoribonuclease [Vibrio alginolyticus E0666]
Length = 711
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/691 (53%), Positives = 511/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ + +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L A+++GH++ ++AI AINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVAIKAINEFKAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L KI ++E K+ +AY+I K R I+ ++ L+ E+ D +I+ I +
Sbjct: 241 TALKDKIAELAEAKLVEAYKITEKMARYDRINEIAAEVNEVLL-AEDPEADTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ KR
Sbjct: 600 ATEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|374313823|ref|YP_005060252.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. 'Cinara cedri']
gi|363988049|gb|AEW44240.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. 'Cinara cedri']
Length = 695
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/686 (55%), Positives = 511/686 (74%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
II+ F+YG + ++IE G +ARQATS+V+VS++DT + TVV K P +FFPLTV+Y
Sbjct: 5 IIRKFQYGQHTVTIETGMMARQATSAVMVSMDDTAVFVTVVGEKKPKLDQSFFPLTVNYQ 64
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YA GRIPGSFF+REG+PSE ET+ +RLIDRPIRPLFP +LNE+QI+ V+SVN Q+
Sbjct: 65 ERTYAVGRIPGSFFRREGRPSESETLTARLIDRPIRPLFPCDFLNEVQIIATVVSVNAQV 124
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
+PDI +IIG S ALS+S +PF GP+G A+VGYI+ +YILNPTT++LK S LDL+V+GT +
Sbjct: 125 NPDIVAIIGASAALSLSGIPFNGPIGAARVGYINNEYILNPTTDELKISSLDLVVSGTIR 184
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L ED +L AI FGH + ++ I IN LV G+ NW + L +
Sbjct: 185 AVLMVESEADVLSEDQMLGAINFGHRQQEVVIENINSLVAEAGKPSWNWRAPAINTELHT 244
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+I +++ K+ AY I KQ R +I + ++L++ + T++ +I I+ ++
Sbjct: 245 RIEELAKAKLGNAYHITEKQERYAQIDDIKNHVITTLLEQDE-TLNTTEIKNIINNVRKN 303
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R ++L RID R + IR + +RTGILPRTHGS+LFTRG+TQALV+ATLGT+RD Q
Sbjct: 304 VVRNRVLRGEPRIDGREKDMIRSLDVRTGILPRTHGSALFTRGETQALVIATLGTARDAQ 363
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID LMGE TD+F+ HYN PP++ G+IG +G PKRREIGHGRLAKR++L ++PN F Y
Sbjct: 364 NIDELMGEKTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSMLAMMPNTEDFPY 423
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAG+AMGL+K+ + V+LSDILG
Sbjct: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKATVAGVAMGLVKEADNFVVLSDILG 483
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAG+ GITALQMDIKI GIT +I+QIAL +AK +IL M+ +
Sbjct: 484 DEDHLGDMDFKVAGSRTGITALQMDIKIEGITKEIMQIALNQAKGARLHILNVMEQAISM 543
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEET T I+I+D G I IA+ NS
Sbjct: 544 PRREISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETHTTIEIDDNGTIKIAATNSE 603
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ A RRIE++T +++GK+Y G V R+ DFGA + I GK+GL+HISQI KRV+ +T
Sbjct: 604 KAKFAIRRIEEITSEIEVGKIYQGKVTRIVDFGAFVSIGGGKEGLVHISQIVDKRVDKVT 663
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 664 DYLQMNQEVPVKVIEVDRQGRVRLSI 689
>gi|383316396|ref|YP_005377238.1| polyribonucleotide nucleotidyltransferase [Frateuria aurantia DSM
6220]
gi|379043500|gb|AFC85556.1| polyribonucleotide nucleotidyltransferase [Frateuria aurantia DSM
6220]
Length = 701
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/688 (54%), Positives = 506/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K+ KSF+YG +++ +E GEIARQA+ +V+ S+ TV+L +VV+ P +FFPLTVDY
Sbjct: 3 KVTKSFQYGKHEVKLETGEIARQASGAVMASMGGTVVLVSVVAAAKPREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
+EK Y+AGRIPG FFKREG+P+E+ET+ SRLIDRP+RPLFPE Y NE+Q++ V+S+NP+
Sbjct: 63 VEKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPEEYKNEVQVIAQVISLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI +++G S ALS++ +PF GP+G A+VGY +G+Y+LNPT +LK S LDL+VAGT
Sbjct: 123 IDGDIVAMLGASAALSLAGIPFKGPIGAARVGYANGQYLLNPTVSELKTSALDLVVAGTS 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A++FGH++M+ AINAI EL + W +++ L+
Sbjct: 183 NAVLMVESEAQLLTEEVMLGAVVFGHQQMQTAINAIAELATEAARPSSTWTAPARNEALV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN-ENLTIDINDINCILYDLE 365
+ I K+ +A+Q+++K R I D+ + L E ++ +LE
Sbjct: 243 AAIAGAVGDKLAQAFQVRDKLQRRDAISAIKADVLAELAPQAEANAWPAAELAKEFAELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R + D+RPIS+R G+LPRTHGS+LFTRG+TQALVVATLGT+RD
Sbjct: 303 YRTMRDSVLQTKVRIDGRQLADVRPISVRVGVLPRTHGSALFTRGETQALVVATLGTTRD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA GE DSF+ HYN PPF+ G+ GR G PKRREIGHGRLAKR + V P+ +F
Sbjct: 363 AQIIDAPEGESKDSFLFHYNFPPFSVGETGRFGAPKRREIGHGRLAKRGVQAVKPSIEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y IR+VSEITESNGSSSMASVCG LA++DAGVP+ VAGIAMGL+K+G+ V+LSDI
Sbjct: 423 PYVIRMVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLVKEGDNYVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GI+ALQMDIKI GIT +I+++AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGISALQMDIKIDGITEEIMKVALEQAKGGRLHILGEMAKGL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ E+S+FAPRL+TIKI P KIR+VIGKGG+TIR +TEETGT IDI D+G + IAS N
Sbjct: 543 NAPREEMSEFAPRLLTIKIHPDKIREVIGKGGATIRAITEETGTTIDITDDGNVVIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ AK RIE++ V+ G++Y G V +L DFGA + IL GKDGL+H+SQIS++RV
Sbjct: 603 REAADAAKLRIEQIVSDVEPGRIYEGKVAKLMDFGAFVTILPGKDGLVHVSQISNERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE V+VKVL +D +GRI+LS+
Sbjct: 663 VSDKLKEGDIVKVKVLEVDKQGRIRLSI 690
>gi|319787423|ref|YP_004146898.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
suwonensis 11-1]
gi|317465935|gb|ADV27667.1| polyribonucleotide nucleotidyltransferase [Pseudoxanthomonas
suwonensis 11-1]
Length = 701
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 516/690 (74%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ SV+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGSVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+P+E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP+
Sbjct: 63 QEKFYAGGRIPGGFFKREGRPTEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI ++IG S ALS++ PF GP+G AKVGY DG+YILNP+ +L +S L+L+VAGT
Sbjct: 123 IDGDIPALIGASAALSLAGTPFKGPIGAAKVGYKDGQYILNPSASELAESKLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ INAINELV G K W K++ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELVAEAGTKPSQWVAPAKNEALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
+ + +++ A+QI++K R I KD+ L + E + ++ +
Sbjct: 243 AALKEAVGNRLADAFQIRDKLERRDAIAAIKKDVAEQLAGRVAAEGW--NPAELGKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R +LD +RID R ++ +RPIS++TG+LPRTHGS++FTRG+TQA+VV TLGT+
Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPISVKTGVLPRTHGSAMFTRGETQAIVVTTLGTT 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQIIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSIE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ ++ V+LS
Sbjct: 421 EFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +G++ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTADGVSALQMDIKIEGITEEIMKQALEQAKAGRLHILGEMAK 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS++APRL+TIKI P KIR+VIGKGG+TI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 ALTAPRAELSEYAPRLLTIKIHPDKIREVIGKGGATIQGITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+ + Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 601 VNAAAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE V+VKVL +D +GRI+LS+
Sbjct: 661 EKVSDKLKEGDVVKVKVLEVDKQGRIRLSI 690
>gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
ATCC 11116]
gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
ATCC 11116]
Length = 714
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/695 (54%), Positives = 510/695 (73%), Gaps = 2/695 (0%)
Query: 59 MKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
MK N + N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +
Sbjct: 1 MKEN-IVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQD 59
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V
Sbjct: 60 FFPLTVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVA 119
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
V+SVNPQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S L
Sbjct: 120 TVVSVNPQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRL 179
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGT+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W
Sbjct: 180 DLVVAGTDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVA 239
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDIN 358
+ LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I
Sbjct: 240 PEPNTDLINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIV 298
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VA
Sbjct: 299 DIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVA 358
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT RD Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V
Sbjct: 359 TLGTERDAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAV 418
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
+P+ KF Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK
Sbjct: 419 MPSLAKFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEK 478
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL
Sbjct: 479 FVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHIL 538
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
M+ +P + ++S +APR+ T+KIDP KI+D+IGKGG+TIR+LTEETGT IDI+D+G
Sbjct: 539 GVMEQAIPAPRADISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGT 598
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
+ IA+ +S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI
Sbjct: 599 VKIAAVDSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQI 658
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 659 AEERVEKVSDYLQVGQEVNVKVVEIDRQGRIRLTM 693
>gi|330830884|ref|YP_004393836.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
gi|423202713|ref|ZP_17189292.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AER39]
gi|423208471|ref|ZP_17195025.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii
AER397]
gi|328806020|gb|AEB51219.1| Polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
gi|404614909|gb|EKB11888.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AER39]
gi|404618316|gb|EKB15236.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii
AER397]
Length = 715
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/689 (54%), Positives = 503/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLTV
Sbjct: 1 MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q+V V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VGY++G+Y+LNPTT +L +S LDL+VAG
Sbjct: 121 PAVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ L E+++L A+++GHE+M+ INAINE VG K +W P ++
Sbjct: 181 TANAVLMVESEAAILSEEVMLGAVVYGHEQMQTVINAINEFAAAVGTKPWDWTPPAVNEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +K+ ++ ++ +AY+I K +R T I + +I + + D I + L
Sbjct: 241 LKAKVAELASAELGEAYRITEKAVRYETIAAIKGRVVEQVIAS-GVEEDAKKIGEEFHSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +++ RID R IR +S+ TGILPR HGS+LFTRG+TQA+VVATLGT R
Sbjct: 300 ESRIVRGRVVRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L G D FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQNIDELTGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A+ +IL+ M
Sbjct: 480 ILGDEDHLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+++D+G + I++
Sbjct: 540 IQAPRAQISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + EA RRIE +T +++ ++Y G V+RL DFGA + IL GKDGL+HISQI+ RV
Sbjct: 600 ANEAAMEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQ 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D L V+VKVL +D +GR++LS+
Sbjct: 660 NVADHLTIGDVVKVKVLEVDRQGRVRLSI 688
>gi|345428773|ref|YP_004821889.1| polynucleotide phosphorylase [Haemophilus parainfluenzae T3T1]
gi|301154832|emb|CBW14295.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
parainfluenzae T3T1]
Length = 712
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++EIG IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLEIGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGTSAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSSAAKNVMARIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVTVKVVEIDRQGRIRLTM 688
>gi|165975991|ref|YP_001651584.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|226702591|sp|B0BUD5.1|PNP_ACTPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|165876092|gb|ABY69140.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 715
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVN
Sbjct: 61 DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPTT + K S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W +
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+++ ++E +I AY+I KQ R I D+ + L ++ TI I I+ L
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLT-TQDETISEGAIIDIITAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +
Sbjct: 360 DAQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ + + RIE + V++ +Y G V R+ DFGA + IL GK+GL+HISQI+++RV
Sbjct: 600 DNNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L Q+V VKV+ ID + RI+L+M
Sbjct: 660 RVADYLSVGQEVTVKVVEIDRQNRIRLTM 688
>gi|145640150|ref|ZP_01795734.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
R3021]
gi|229846318|ref|ZP_04466426.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
7P49H1]
gi|145274736|gb|EDK14598.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
22.4-21]
gi|229810411|gb|EEP46129.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
7P49H1]
Length = 709
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|194366584|ref|YP_002029194.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
maltophilia R551-3]
gi|226702692|sp|B4SQR6.1|PNP_STRM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|194349388|gb|ACF52511.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas
maltophilia R551-3]
Length = 702
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/690 (55%), Positives = 507/690 (73%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L + V+ K +FFPLT DY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTCDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP+
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI ++IG S ALS++ PF GP+ AKVGY DG+YILNPT +LK+S L+L+VAGT
Sbjct: 123 IDGDIPALIGASAALSLAGTPFKGPIAAAKVGYKDGEYILNPTVSELKESQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L ED++L A+ FGH +M+ INAINEL G K W+ K+ LI
Sbjct: 183 NAVLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNTALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ +A+Q+++K R I KD+ SL + E + +++ +
Sbjct: 243 SAVQEAVGPRLGEAFQVRDKLQRRDAISAIKKDVVESLAGRVAAEGW--NPAELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +R +LD +RID R ++ +RPI+++T +LPRTHGSSLFTRG+TQA+V TLGT+
Sbjct: 301 LEYSTMRNSVLDTKVRIDGRALDTVRPIAVKTSVLPRTHGSSLFTRGETQAIVTITLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PP++ G+ GR+ PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVSGEYKENFLFHYNFPPYSVGETGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G++ V+LS
Sbjct: 421 SFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGDRFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GI+ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE V+VKVL +D +GRI+LSM
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSM 690
>gi|417843177|ref|ZP_12489254.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21127]
gi|341950411|gb|EGT77000.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21127]
Length = 709
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I +E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITSEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|145637206|ref|ZP_01792868.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittHH]
gi|145269651|gb|EDK09592.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittHH]
Length = 709
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVTIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|406675898|ref|ZP_11083084.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC35]
gi|404626121|gb|EKB22931.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC35]
Length = 715
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/689 (53%), Positives = 503/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSF+YG + +++E G +ARQAT++V+VS++DT + TVV K+ +FFPLTV
Sbjct: 1 MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FF+REG+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q+V V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VGY++G+Y+LNPTT +L +S LDL+VAG
Sbjct: 121 PAVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ L E+++L A+++GHE+M+ +NAINE VG K +W P ++
Sbjct: 181 TANAVLMVESEAAILSEEVMLGAVVYGHEQMQTVVNAINEFAAAVGTKPWDWTPPAVNEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +K+ ++ ++ +AY+I K +R T I + +I + + D I + L
Sbjct: 241 LKAKVAELASAELGEAYRITEKAVRYETIAAIKGRVVEQVIAS-GVEEDAKKIGEEFHSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +++ RID R IR +S+ TGILPR HGS+LFTRG+TQA+VVATLGT R
Sbjct: 300 ESRIVRGRVVRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L G D FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQNIDELTGNRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A+ +IL+ M
Sbjct: 480 ILGDEDHLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+++D+G + I++
Sbjct: 540 IQAPRAQISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + EA RRIE +T +++ ++Y G V+RL DFGA + IL GKDGL+HISQI+ RV
Sbjct: 600 ANEAAMEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQ 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D L V+VKVL +D +GR++LS+
Sbjct: 660 NVADHLTIGDVVKVKVLEVDRQGRVRLSI 688
>gi|336125013|ref|YP_004567061.1| polyribonucleotide nucleotidyltransferase [Vibrio anguillarum 775]
gi|365539342|ref|ZP_09364517.1| polynucleotide phosphorylase/polyadenylase [Vibrio ordalii ATCC
33509]
gi|335342736|gb|AEH34019.1| Polyribonucleotide nucleotidyltransferase [Vibrio anguillarum 775]
Length = 708
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/691 (53%), Positives = 509/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F+K ++KSF+YG++ +++E G IARQATS+V+V++ DT + +VV K+ +FFPL
Sbjct: 1 MFDKPVVKSFQYGNHTVTLETGVIARQATSAVMVTMNDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNAFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSMTELAVSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+ L E+ +L A+++GH++ + I AINE V +W ++
Sbjct: 181 AGTDNAVLMVESEADNLTEEEMLAAVVYGHDQQQAVIKAINEFAAEVATPAWDWVAPQEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L SKI ++E K+ +AY+I K R I+ ++ + +I E+ + +I+ I +
Sbjct: 241 TVLNSKIAELAEAKLVEAYKITEKMARYDRIHEIAAEV-NKVILAEDPEANAKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTGILPRTHGS+LFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGILPRTHGSALFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D+F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNQGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + E+S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISGARAEISEFAPRIYTMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ +S +EA RRIE++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ +R
Sbjct: 600 ATDSAQAKEAIRRIEEITAEVEVGAIYTGKVARLADFGAFVNILPGKDGLVHISQIADQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++D+LKE Q+V+VKVL ID +GR++LSM
Sbjct: 660 IEKVSDYLKEGQEVQVKVLEIDRQGRVRLSM 690
>gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3047]
gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3047]
Length = 709
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R ++ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTIDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ K
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAK 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+D+IGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|68248838|ref|YP_247950.1| polynucleotide phosphorylase [Haemophilus influenzae 86-028NP]
gi|145635136|ref|ZP_01790841.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittAA]
gi|81336747|sp|Q4QNV7.1|PNP_HAEI8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68057037|gb|AAX87290.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
86-028NP]
gi|145267557|gb|EDK07556.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittAA]
Length = 709
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I A+ E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAVKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I + I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISESKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|145628545|ref|ZP_01784345.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
22.1-21]
gi|145639858|ref|ZP_01795459.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittII]
gi|378696376|ref|YP_005178334.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
10810]
gi|144979015|gb|EDJ88701.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
22.1-21]
gi|145271076|gb|EDK10992.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittII]
gi|301168898|emb|CBW28492.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
10810]
gi|309750352|gb|ADO80336.1| Polynucleotide phosphorylase [Haemophilus influenzae R2866]
Length = 709
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|89072579|ref|ZP_01159151.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
SKA34]
gi|89051683|gb|EAR57136.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
SKA34]
Length = 708
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/689 (53%), Positives = 515/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ +++E G +ARQAT++V+VS++DT + +VV K +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P ++PDI ++IG S AL+IS +PF GP+G A+VGYI+ +++LNP+ +L++S LDL+VAG
Sbjct: 121 PAVNPDIVTMIGTSAALTISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ +L E+ +L A++FGH++ ++AINAINE V +W ++
Sbjct: 181 TKDAVLMVESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +KI ++E K+ +AYQI K R I+ ++ +++ E+ + +I+ I +DL
Sbjct: 241 LKNKIAELAETKLVEAYQITEKMARYDRIHEIAGEVNDAIL-AEDAEANTKEIHTIFHDL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKTVVRGRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+ ++
Sbjct: 360 DAQIIDGLTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S+FAPR+ T+KI+P KI+DVIGKGG+ IR LTEETGT I+I D+G + IA+
Sbjct: 540 INTPREDISQFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +EA RRIE++T V++G++YTG V+R+ DFGA + ++ K+GL+HISQIS RV
Sbjct: 600 EGTAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKVL ID +GRI+LSM
Sbjct: 660 KVSDYLQMGQEVQVKVLEIDRQGRIRLSM 688
>gi|33152626|ref|NP_873979.1| polynucleotide phosphorylase [Haemophilus ducreyi 35000HP]
gi|81423299|sp|Q7VL91.1|PNP_HAEDU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33148850|gb|AAP96368.1| polyribonucleotide nucleotidyltransferase [Haemophilus ducreyi
35000HP]
Length = 712
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/686 (54%), Positives = 506/686 (73%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K FKYG + +++E G IARQAT++V+ S++DT + +VV+ K+ +FFPLTV+Y
Sbjct: 4 IVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQIV V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSENETLIARLIDRPIRPLFPEGFFNEIQIVATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAGT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTITEQKQSRLDLVVAGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L A++FGH++ +I I I E V+ G+ + +W P + LI+
Sbjct: 184 AVLMVESEADILSEEQMLAAVVFGHQQQQIVIENIKEFVKEAGKPRWDWQPAEANTALIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
++ ++E +I AY+I KQ R I D+ + L + TI I I+ LES
Sbjct: 244 QVKALAETRIGDAYRITEKQARYEQIDAIKADVIAQLTAQDE-TISEGAIIDIITALESS 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R V+ +R ++I TG+LPRTHGS++FTRG+TQAL VATLGT RD Q
Sbjct: 303 VVRGRILAGEPRIDGRTVDTVRALNICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +L V+P+ +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPSAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKATVAGIAMGLVKEDEKFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+ IAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTRKGITALQMDIKIEGITPEIMHIALNQAKGARMHILNVMEQALPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ +LS FAPR+ T+KIDP KI+DVIGKGG+ IR+LTEETGT IDI+D+G + IA+ ++
Sbjct: 543 PRADLSDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDDDGTVKIAATDNN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE++ V++ +YTG V R+ DFGA + IL GK+GL+HISQI+ RV ++
Sbjct: 603 AAKMVMSRIEEIVAEVEVNAIYTGKVSRVVDFGAFVTILGGKEGLVHISQITDARVERVS 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q+V VKV+ ID + RI+L+M
Sbjct: 663 DYLSVGQEVNVKVVEIDRQNRIRLTM 688
>gi|303251556|ref|ZP_07337730.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252131|ref|ZP_07534030.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302649554|gb|EFL79736.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860431|gb|EFM92445.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 715
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVN
Sbjct: 61 DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPTT + K S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T KA++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W +
Sbjct: 181 TNKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+++ ++E +I AY+I KQ R I D+ + L ++ TI I I+ L
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLT-TQDETISEGAIIDIITAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +
Sbjct: 360 DAQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ + + RIE + V++ +Y G V R+ DFGA + IL GK+GL+HISQI+++RV
Sbjct: 600 DNNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L Q+V VKV+ ID + RI+L+M
Sbjct: 660 RVADYLSVGQEVTVKVVEIDRQNRIRLTM 688
>gi|32034381|ref|ZP_00134571.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|126208059|ref|YP_001053284.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|303252208|ref|ZP_07338376.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247551|ref|ZP_07529595.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307256599|ref|ZP_07538380.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307261033|ref|ZP_07542715.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263214|ref|ZP_07544834.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|187470959|sp|A3MZU3.1|PNP_ACTP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096735|sp|B3GXC1.2|PNP_ACTP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|126096851|gb|ABN73679.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|302648991|gb|EFL79179.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306855916|gb|EFM88075.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306865009|gb|EFM96911.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306869335|gb|EFN01130.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306871431|gb|EFN03155.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 715
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVN
Sbjct: 61 DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPTT + K S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W +
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+++ ++E +I AY+I KQ R I D+ + L + T+ I I+ L
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTAQDE-TVSEGAIIDIITAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +
Sbjct: 360 DAQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ + + RIE + V++ +Y G V R+ DFGA + IL GK+GL+HISQI+++RV
Sbjct: 600 DNNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L Q+V VKV+ ID + RI+L+M
Sbjct: 660 RVADYLSVGQEVTVKVVEIDRQNRIRLTM 688
>gi|384086170|ref|ZP_09997345.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 692
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/686 (55%), Positives = 495/686 (72%), Gaps = 2/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K +G ++ +E G +ARQA +VLVS DTV+L T V ++ +FFPLTV+Y
Sbjct: 4 IRKELDFGGQRLHLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EKAYAAG+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ VLSV+
Sbjct: 64 EKAYAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVLSVDRDH 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI +++G S AL+IS +PF GP+G A+VGY++G+Y+LNP+ QL +S LDL+VAGT
Sbjct: 124 DPDILAMLGASAALAISGIPFRGPIGGARVGYVNGQYVLNPSAAQLAESQLDLVVAGTRN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++QL E+++L A++FGH + I AI L VG+ NW V D+ L
Sbjct: 184 AVLMVESEAQQLSEEVMLEAVMFGHAGFQPVIEAIEALAHEVGKTSWNWVAPVADEALGQ 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
++ + +++AY + KQ R + I + + + L + D+ + + +E+
Sbjct: 244 QVQAKASGLLQEAYSLVEKQARSKKLEEIQQHMVAELAAEDAQRADM--VRGFVKKIETG 301
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +ILD RID R +RPI+I G+LPRTHGS+LFTRG+TQALVVATLGT DEQ
Sbjct: 302 IVRGRILDGAPRIDGRDTKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQ 361
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDAL GE D FMLHYN PPF+TG+ G +G PKRREIGHGRLAKRA+ VLP ++F Y
Sbjct: 362 IIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAVAAVLPEASEFPY 421
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
S+R+VSE+ ESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+GE+ +L+DILG
Sbjct: 422 SLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGERFAVLTDILG 481
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I+ AL +A G +IL M + K
Sbjct: 482 DEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAAALKQAHAGRLHILGLMNAVLEK 541
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ELS APR+ITI I+P KIRDVIG GG IR LTEETG IDI D G +TIA+ +S
Sbjct: 542 GRVELSDNAPRIITIHINPDKIRDVIGPGGKVIRALTEETGAAIDIQDNGTVTIATVDSE 601
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+G A+RRIE LT VQ+ +Y G V ++ DFGA + IL G+DGLLHISQISS+RV+ +
Sbjct: 602 AGAAARRRIELLTAEVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISSERVSDVH 661
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+LKE Q VRVKVL +D +G+IKLSM
Sbjct: 662 DYLKEGQAVRVKVLEVDRQGKIKLSM 687
>gi|229844934|ref|ZP_04465071.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
6P18H1]
gi|229812068|gb|EEP47760.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
6P18H1]
Length = 709
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+++RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLLARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|259907046|ref|YP_002647402.1| polynucleotide phosphorylase/polyadenylase [Erwinia pyrifoliae
Ep1/96]
gi|224962668|emb|CAX54123.1| Polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae
Ep1/96]
Length = 732
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 518/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I+K F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 23 LLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 82
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 83 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 142
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S LPF GP+G A+VGY++ +Y+LNPT+++LK+S LDL+VA
Sbjct: 143 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 202
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ +I I+ IN LV G+ + +W P ++
Sbjct: 203 GTKGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 262
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L S+I ++E ++ AY+I KQ R I + ++L+ E+ +D +I+ +L+
Sbjct: 263 ALRSRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALL-AEDEALDAGEISDLLHA 321
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 322 LEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 381
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 382 RDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGD 441
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+KD V+LS
Sbjct: 442 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLS 501
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 502 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 561
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 562 AISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 621
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 622 TDGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 681
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 682 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 711
>gi|373466883|ref|ZP_09558192.1| polyribonucleotide nucleotidyltransferase [Haemophilus sp. oral
taxon 851 str. F0397]
gi|371759647|gb|EHO48359.1| polyribonucleotide nucleotidyltransferase [Haemophilus sp. oral
taxon 851 str. F0397]
Length = 709
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DNSAAKNVMARIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|119944587|ref|YP_942267.1| polynucleotide phosphorylase/polyadenylase [Psychromonas ingrahamii
37]
gi|187611274|sp|A1ST53.1|PNP_PSYIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119863191|gb|ABM02668.1| Polyribonucleotide nucleotidyltransferase [Psychromonas ingrahamii
37]
Length = 698
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/686 (53%), Positives = 508/686 (74%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+KSF+YG + +++E G +ARQAT++V+ S++DT + +VV +FFPLTV+Y
Sbjct: 4 IVKSFQYGEHTVTLETGVMARQATAAVMCSMDDTCVFVSVVGKNADNQERDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAG+IPG FFKREG+PSE ET+I+RLIDRP+RPLFP G+ NE+Q++ V+S+NP++
Sbjct: 64 EKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPVRPLFPAGFKNEVQVIATVVSINPEV 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
+PD+ ++I S ALSIS +PF GP+G A+VGY +G+Y+LNPT +L+ S L+L+V+GT+
Sbjct: 124 NPDVVAMIATSAALSISGMPFKGPIGCARVGYKEGEYLLNPTKTELETSDLNLVVSGTDN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L ED++L A++FGH++ +I + +I E V + NW +++ L +
Sbjct: 184 AVLMVESEAGILSEDVMLGAVVFGHDQQQIVVESIKEFAAEVARPAWNWAAPARNEALDA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
I ++ + +AYQI +K R K I+ ++ L+ ++ T++ I L+DLE
Sbjct: 244 AIATEAQARFEQAYQISDKGDRYDAIKAITSEVKEKLLASDE-TLEAKQIGEYLHDLEKT 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +I+ RID R IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT RD Q
Sbjct: 303 VVRTRIIKGEPRIDGRDPESIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID++MGE D+F+LHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +F Y
Sbjct: 363 IIDSIMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPSLEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+LSDILG
Sbjct: 423 TVRVVSEITESNGSSSMASVCGASLALMDAGVPLKASVAGIAMGLVKEGEEFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +IL M +P+
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITREIMQIALNQAKAARLHILTVMDQALPQ 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S+FAPR+ TIKI+ KIRDVIGKGG+ IR+L EETGT I+I D+G + IA+ +
Sbjct: 543 GRADISQFAPRIHTIKINTDKIRDVIGKGGAVIRSLCEETGTTIEIEDDGTVKIAATSGE 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+A RI+ LT V++G +YTG V+RL DFGA + IL GKDGL+HISQI +RV ++
Sbjct: 603 QADDAINRIKALTAEVEVGTIYTGKVVRLADFGAFVNILPGKDGLVHISQICEERVQKVS 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D LKE Q+V+VKVL +D +GR++LS+
Sbjct: 663 DHLKEGQEVKVKVLEVDRQGRVRLSI 688
>gi|145631098|ref|ZP_01786873.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
R3021]
gi|144983383|gb|EDJ90865.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
R3021]
Length = 709
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|417841284|ref|ZP_12487388.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19501]
gi|341949322|gb|EGT75926.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19501]
Length = 709
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ S I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADLISQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|325577639|ref|ZP_08147914.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae ATCC 33392]
gi|325160384|gb|EGC72510.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae ATCC 33392]
Length = 712
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSSAAKNVMVRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVTVKVVEIDRQGRIRLTM 688
>gi|386265388|ref|YP_005828880.1| polynucleotide phosphorylase [Haemophilus influenzae R2846]
gi|309972624|gb|ADO95825.1| Polynucleotide phosphorylase [Haemophilus influenzae R2846]
Length = 709
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIIAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|260582885|ref|ZP_05850670.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
NT127]
gi|260094098|gb|EEW78001.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
NT127]
Length = 709
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFTKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEGISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|419846105|ref|ZP_14369362.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK2019]
gi|386414400|gb|EIJ28956.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK2019]
Length = 712
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 504/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSSAAKNVMARIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLHVGQEVTVKVVEIDRQGRIRLTM 688
>gi|307245438|ref|ZP_07527526.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254392|ref|ZP_07536230.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258851|ref|ZP_07540583.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853779|gb|EFM85996.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862691|gb|EFM94647.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867202|gb|EFM99058.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 715
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/689 (54%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVN
Sbjct: 61 DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPTT + K S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W +
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+++ ++E +I AY+I KQ R I D+ + L + T+ I I+ L
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTAQDE-TVSEGAIIDIITAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q +D L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +
Sbjct: 360 DAQIVDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ + + RIE + V++ +Y G V R+ DFGA + IL GK+GL+HISQI+++RV
Sbjct: 600 DNNAAKAVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L Q+V VKV+ ID + RI+L+M
Sbjct: 660 RVADYLSVGQEVTVKVVEIDRQNRIRLTM 688
>gi|260580886|ref|ZP_05848711.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
RdAW]
gi|260092509|gb|EEW76447.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
RdAW]
Length = 709
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|417950503|ref|ZP_12593624.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus ATCC
33789]
gi|342806427|gb|EGU41651.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus ATCC
33789]
Length = 706
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/691 (52%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVQGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PD+ ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GT A++ VESE+ L E+ +L+A++FGH++ ++ INAINE V +W ++
Sbjct: 181 SGTAGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L ++I ++E K+ +AYQI K R I+ ++ L+ +E+ +++ +++ I +
Sbjct: 241 TALNTRIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLV-SEDEEVNLKEVHSIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D+F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + E+S+FAPR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I IA
Sbjct: 540 EAISGAREEISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++Y G V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVPVKVLEIDRQGRVRLSM 690
>gi|387869759|ref|YP_005801129.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM
12163]
gi|283476842|emb|CAY72680.1| polyribonucleotide nucleotidyltransferase [Erwinia pyrifoliae DSM
12163]
Length = 738
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 518/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
L N I+K F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 29 LLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 88
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 89 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 148
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S LPF GP+G A+VGY++ +Y+LNPT+++LK+S LDL+VA
Sbjct: 149 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 208
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ +I I+ IN LV G+ + +W P ++
Sbjct: 209 GTKGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 268
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L S+I ++E ++ AY+I KQ R I + ++L+ E+ +D +I+ +L+
Sbjct: 269 ALRSRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALL-AEDEALDAGEISDLLHA 327
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 328 LEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 387
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 388 RDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGD 447
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+KD V+LS
Sbjct: 448 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLS 507
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 508 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 567
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 568 AISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 627
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 628 TDGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 687
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 688 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 717
>gi|85712994|ref|ZP_01044032.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
gi|85693163|gb|EAQ31123.1| Polynucleotide phosphorylase [Idiomarina baltica OS145]
Length = 713
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K F+YG + +++E G +ARQAT++V+ S++DT +L +VV+ K+ +FFPLTV
Sbjct: 1 MNPITKQFQYGQHTVTLETGVVARQATAAVMASMDDTTVLVSVVAKKEAREGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+ SRLIDRPIRPLFPEG++NE+Q+V V+SVN
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFMNEVQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQ+ PD+ ++IG S AL+IS +PF GP+G A+VG I+ +Y+LNPT ++L +S LDL+VAG
Sbjct: 121 PQVSPDLVAMIGTSAALAISGVPFNGPIGAARVGVINDEYVLNPTQDELTESKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T++A++ VESE+ L ED +L A++FGHE M++ I+AINE Q G++K +W KD T
Sbjct: 181 TQQAVLMVESEANLLSEDTMLGAVMFGHESMQVVIDAINEFAQEAGKEKWDWQAPQKDAT 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+ K+ +++E I +AY+I +K R + + + L+ EN D ++ I +D+
Sbjct: 241 LVEKVKSLAEAGIGEAYRITDKAERYGKIAEVKQAMIEQLV-AENEEADTDEAGKIFHDV 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E I+R +IL RID R + +R IS+ TG+LPRTHGS+LFTRG+TQALV ATLGT R
Sbjct: 300 EKDIVRSRILAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L G T F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P++ +
Sbjct: 360 DAQMIDELTGTSTSRFLLHYNFPPYCVGETGMVGAPKRREIGHGRLAKRGIQAVMPSHEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+K V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG GITALQMDIKI GIT DI++ AL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGNNEGITALQMDIKIDGITRDIMESALGQAKAARLHILSVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++ELS +APR TIKID KI+DVIGKGG+ IR LTE T T I+I D+G I IA+
Sbjct: 540 IGEHRDELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKIAAS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ A +RI++LT +++GK+Y G V R+ DFGA + +L GKDGL+HISQI+ +RVN
Sbjct: 600 DQNDADAAIKRIKELTAEIEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVN 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+LK V VKVL ID +GR++LSM
Sbjct: 660 DVNDYLKVGDTVPVKVLEIDRQGRVRLSM 688
>gi|148825487|ref|YP_001290240.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittEE]
gi|187610272|sp|A5UAQ6.1|PNP_HAEIE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148715647|gb|ABQ97857.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittEE]
Length = 709
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L +++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADVLTEEQMLASVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|90581545|ref|ZP_01237338.1| polyribonucleotide nucleotidyltransferase [Photobacterium angustum
S14]
gi|90437307|gb|EAS62505.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
Length = 708
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/689 (53%), Positives = 513/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ +++E G +ARQAT++V+VS++DT + +VV K +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VGYI+ +++LNP+ +L++S LDL+VAG
Sbjct: 121 PAVSPDIVTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ +L E+ +L A++FGH++ ++AINAINE V +W ++
Sbjct: 181 TKDAVLMVESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +KI ++E K+ AYQI K R I+ ++ +++ E+ + +I+ I +DL
Sbjct: 241 LKNKIAELAEAKLVDAYQITEKMARYDRIHEIAGEVNDAIL-AEDAEANSKEIHTIFHDL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKTVVRGRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+ ++
Sbjct: 360 DAQIIDGLTGETKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S+FAPR+ T+KI+P KI+DVIGKGG+ IR LTEETGT I+I D+G + IA+
Sbjct: 540 INTPREDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +EA RRIE++T V++G++YTG V+R+ DFGA + ++ K+GL+HISQIS RV
Sbjct: 600 EGTAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKVL ID +GRI+LSM
Sbjct: 660 KVSDYLQMGQEVQVKVLEIDRQGRIRLSM 688
>gi|148827370|ref|YP_001292123.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittGG]
gi|187610273|sp|A5UG34.1|PNP_HAEIG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148718612|gb|ABQ99739.1| polynucleotide phosphorylase [Haemophilus influenzae PittGG]
Length = 709
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G +VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAVRVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I+ I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEEINEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|385786986|ref|YP_005818095.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617]
gi|310766258|gb|ADP11208.1| polynucleotide phosphorylase/polyadenylase [Erwinia sp. Ejp617]
Length = 710
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/690 (54%), Positives = 518/690 (75%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+K F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S LPF GP+G A+VGY++ +Y+LNPT+++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ +I I+ IN LV G+ + +W P ++
Sbjct: 181 GTKGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L S+I ++E ++ AY+I KQ R I + ++L+ E+ +D +I+ +L+
Sbjct: 241 ALRSRIAALAESRLSDAYRITEKQERYAQVDVIKSETTAALL-AEDEALDAGEISDLLHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+KD V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3031]
gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3031]
Length = 709
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID + +LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQLVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ K
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAK 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+D+IGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLIHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|260771810|ref|ZP_05880728.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
69.14]
gi|260613102|gb|EEX38303.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
69.14]
Length = 711
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 510/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV KD +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKDAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLF + + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFHDAFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+I+G+ +LNP+ ++L +S LDL+V
Sbjct: 121 VNPNVQPDIVTMIGTSAALAISGMPFNGPIGAARVGHINGQLVLNPSPKELDQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L A+++GH++ ++ INAINE V +W ++
Sbjct: 181 AGTEGAVLMVESEADILSEEEMLAAVVYGHDQQQVVINAINEFAAEVATPSWDWVAPQEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L KI ++E ++ +AYQI K R I D+ ++++ E+ + D+ I +L
Sbjct: 241 TALKEKIAQLAEVRLTEAYQIIEKMARYEKVAAIKADVIAAIL-AEDDSQDVMKIKKLLG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE +++R +I+ RID R + IR + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 ALEKQVVRGRIIAGEKRIDGREKDMIRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDYFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEDENFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAIAGARDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRMLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + QEA RRI ++T V++GK+YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAQEAIRRILQITAEVEVGKIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++D L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 IEKVSDVLAEGQEVQVKVLEIDRQGRVRLSM 690
>gi|417839272|ref|ZP_12485465.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19107]
gi|341953842|gb|EGT80338.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19107]
Length = 709
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/689 (54%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ IR + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTIRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMARIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVTVKVVEIDRQGRIRLTM 688
>gi|387771787|ref|ZP_10127944.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parahaemolyticus HK385]
gi|386908172|gb|EIJ72870.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parahaemolyticus HK385]
Length = 707
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/686 (54%), Positives = 509/686 (74%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I++ FKYG + +++E G IARQAT++V+ S++DT + TVV+ K+ +FFPLTVDY
Sbjct: 4 IVRQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+++RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEGETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPTT + K S LDL+VAGT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKLSRLDLVVAGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W + LI+
Sbjct: 184 AVLMVESEADILTEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E +I AY+I KQ R I ++ ++L E+ T+ I I+ LES+
Sbjct: 244 KVKALAESRIGDAYRITEKQARYEQIDTIKAEVIATLT-VEDETLSEGAIIDIITALESQ 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT RD Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P+ +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILNVMEQAIPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+ ++
Sbjct: 543 PRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE++ V++ +Y G V R+ DFGA + IL GK+GL+HISQI+ +RV +
Sbjct: 603 AAKTVMARIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITDERVERVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q+V VKV+ ID + RI+L+M
Sbjct: 663 DYLSVGQEVMVKVVEIDRQNRIRLTM 688
>gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 708
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/689 (53%), Positives = 511/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ +++E G +ARQAT++V+VS++DT + +VV K +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VGYI+ +++LNP+ +L++S LDL+VAG
Sbjct: 121 PAVSPDIVTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ +L E+ +L A++FGH++ + I AINE V +W ++
Sbjct: 181 TEAAVLMVESEADRLTEEQMLQAVVFGHDQQQTVIKAINEFAAEVATPAWDWVAPAENTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +KI ++E K+ +AYQI K R I+ ++ L+ E++ + +I+ I +DL
Sbjct: 241 LKNKIAELAEAKLVEAYQITEKMARYDRIHEIADEVNEVLL-AEDVEANTKEIHTIFHDL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+ ++
Sbjct: 360 DAQIIDELTGEKKDYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTEDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S+FAPR+ T+KI+P KI+DVIGKGG+ IR LTEETGT I+I D+G + IA+
Sbjct: 540 INTPREDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +EA RRIE++T V++G++YTG V+R+ DFGA + ++ K+GL+HISQIS RV
Sbjct: 600 EGTAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V+VKVL ID +GRI+LSM
Sbjct: 660 KVSDYLQMGQEVKVKVLEIDRQGRIRLSM 688
>gi|148976703|ref|ZP_01813390.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
SWAT-3]
gi|145964054|gb|EDK29312.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
SWAT-3]
Length = 706
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/691 (52%), Positives = 513/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVQGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PD+ ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GT A++ VESE+ L E+ +L+A++FGH++ ++ INAINE V +W ++
Sbjct: 181 SGTAGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L ++I ++E K+ +AYQI K R I+ ++ L+ +E+ +++ +++ I +
Sbjct: 241 TALNTRIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLV-SEDEEVNLKEVHSIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D+F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++G++Y G V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVPVKVLEIDRQGRVRLSM 690
>gi|261492523|ref|ZP_05989076.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496798|ref|ZP_05993172.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261307545|gb|EEY08874.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261311682|gb|EEY12832.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 716
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/686 (54%), Positives = 508/686 (74%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTVDY
Sbjct: 4 IVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPTT + K S LDL+VAGT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L A++FGHE+ ++ I + E V+ G+ + +W + LI+
Sbjct: 184 AVLMVESEADILTEEQMLAAVVFGHEQQQVVIENLKEFVKEAGKPRWDWVAPEPNTDLIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E ++ AY+I KQ+R I ++ + L E+ T+ I I+ LES+
Sbjct: 244 KVKALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLT-AEDETVSEGTIIDIITALESQ 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +I+ RID R V+ +R + I T +LPRTHGS+LFTRG+TQAL VATLGT RD Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEET T IDI+D+G + IA+ +
Sbjct: 543 PRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE++ V++ ++Y G V R+ DFGA + IL GK+GL+HISQI+++RV +
Sbjct: 603 AAKAVMARIEEIVAEVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q+V+VKV+ ID +GRI+L+M
Sbjct: 663 DYLTVGQEVQVKVVEIDRQGRIRLTM 688
>gi|292486841|ref|YP_003529711.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
CFBP1430]
gi|292900761|ref|YP_003540130.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
gi|428783770|ref|ZP_19001263.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
ACW56400]
gi|291200609|emb|CBJ47741.1| polynucleotide phosphorylase [Erwinia amylovora ATCC 49946]
gi|291552258|emb|CBA19295.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
CFBP1430]
gi|312170909|emb|CBX79168.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora ATCC
BAA-2158]
gi|426277485|gb|EKV55210.1| polyribonucleotide nucleotidyltransferase [Erwinia amylovora
ACW56400]
Length = 710
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 517/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+K F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVKKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S AL++S LPF GP+G A+VGY++ +Y+LNPT+++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALALSGLPFNGPIGAARVGYLNDQYVLNPTSDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE++ L E+ +L A++FGH++ +I I+ IN LV G+ + +W P ++
Sbjct: 181 GTQGAVLMVESEAELLSEEQMLGAVVFGHDQQQIVIDNINALVAEAGKPRWDWQPEAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L S+I +E ++ AY+I KQ R I + ++L+ E+ T+D +I+ +L+
Sbjct: 241 ALRSRIAAQAESRLSDAYRITEKQERYAQVDVIKSETTAALL-AEDDTLDAGEISDLLHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEKDVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P
Sbjct: 360 RDAQNLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKGE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+KD V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDNNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AISGPRGDISQFAPRIHTIKISVDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKFAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|419839523|ref|ZP_14362930.1| polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
HK386]
gi|386909383|gb|EIJ74058.1| polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
HK386]
Length = 709
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADAIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
Length = 713
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/691 (53%), Positives = 509/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++KSF+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PD+ ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPNVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELENSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A+++GH++ ++ I AINE V +W ++
Sbjct: 181 AGTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L ++I ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALNNRIAELAEAKLVEAYQITEKMARYDRIHAIAAEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQA+V ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + E+S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREEISEFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + ++A RIE +T V++GK+YTG V RL DFGA + +L GKDGL+HISQI+ +R
Sbjct: 600 ATDGDQAKDAIARIEAITAEVEVGKIYTGKVARLADFGAFVTVLPGKDGLVHISQIAHER 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD+LKE Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVTDYLKEGQEVQVKVLEIDRQGRVRLSM 690
>gi|418517280|ref|ZP_13083445.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
gi|410706006|gb|EKQ64471.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
Length = 704
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/688 (55%), Positives = 505/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K++++I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNESMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ +L + D+ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS + G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSSKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|346725507|ref|YP_004852176.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. citrumelo F1]
gi|346650254|gb|AEO42878.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. citrumelo F1]
Length = 704
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/688 (55%), Positives = 505/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K++++I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNESMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ +L + D+ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS + G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSSKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|261212242|ref|ZP_05926528.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
gi|260838850|gb|EEX65501.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC341]
Length = 709
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/691 (54%), Positives = 515/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+G+ NE+Q++V V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + INAINE V W V++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPVEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALL-AENEALDAKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|359300105|ref|ZP_09185944.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
[parainfluenzae] CCUG 13788]
Length = 712
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/686 (54%), Positives = 507/686 (73%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTVDY
Sbjct: 4 IVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+++RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEGETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAGT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTISEQKQSRLDLVVAGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W + LI+
Sbjct: 184 AVLMVESEADVLTEEQMLSAVVFGHQQQQVVIENIKEFVREAGKPRWDWVAPEPNTDLIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E +I AY+I KQ R I ++ ++L E+ T+ I I+ LES
Sbjct: 244 KVKALAEARIGDAYRITEKQARYAQIDEIKAEVIATLT-AEDETVSEGAIIDIITALESS 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +IL RID R + +R + I TG+LPRTHGS++FTRG+TQAL VATLGT RD Q
Sbjct: 303 IVRGRILAGEPRIDGRTKDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P+ +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDNFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+ ++
Sbjct: 543 PRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE + V++ +YTG V R+ DFGA + IL GK+GL+HISQI+ RV ++
Sbjct: 603 AAKAVMARIEDIVAEVEVNAIYTGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVS 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q+V+VKV+ ID + RI+L+M
Sbjct: 663 DYLTVGQEVQVKVVEIDRQNRIRLTM 688
>gi|402305152|ref|ZP_10824211.1| polyribonucleotide nucleotidyltransferase [Haemophilus sputorum HK
2154]
gi|400376265|gb|EJP29152.1| polyribonucleotide nucleotidyltransferase [Haemophilus sputorum HK
2154]
Length = 712
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/686 (54%), Positives = 507/686 (73%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTVDY
Sbjct: 4 IVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+++RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEGETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAGT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTISEQKQSRLDLVVAGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W + LI+
Sbjct: 184 AVLMVESEADVLTEEQMLSAVVFGHQQQQVVIENIKEFVREAGKPRWDWVAPEPNTDLIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E +I AY+I KQ R I ++ ++L E+ T+ I I+ LES
Sbjct: 244 KVKALAEVRIGDAYRITEKQARYAQIDEIKAEVIATLT-AEDETVSEGAIIDIITALESS 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +IL RID R + +R + I TG+LPRTHGS++FTRG+TQAL VATLGT RD Q
Sbjct: 303 IVRGRILAGEPRIDGRTKDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P+ +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDNFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+ ++
Sbjct: 543 PRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATDNN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE + V++ VYTG V R+ DFGA + IL GK+GL+HISQI+ RV ++
Sbjct: 603 AAKAVMARIEDIVAEVEVNAVYTGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVS 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q+V+VKV+ ID + RI+L+M
Sbjct: 663 DYLTVGQEVQVKVVEIDRQNRIRLTM 688
>gi|416893567|ref|ZP_11924717.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus ATCC 33389]
gi|347813857|gb|EGY30510.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus ATCC 33389]
Length = 733
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/690 (54%), Positives = 505/690 (73%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLT
Sbjct: 24 IVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLT 83
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SV
Sbjct: 84 VNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSV 143
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI PD+ ++IG S AL++S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VA
Sbjct: 144 NPQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVA 203
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 204 GTDKAVLMVESEAGILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNT 263
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ + I I
Sbjct: 264 DLINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ISAEDEEVAEGKIIDIFTA 322
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT
Sbjct: 323 LESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTE 382
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P
Sbjct: 383 RDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLA 442
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LS
Sbjct: 443 EFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLS 502
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 503 DILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQ 562
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 563 AIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAA 622
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + Q+ RIE +T V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 623 VDKNAVQDVMARIEDITAEVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERV 682
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 683 EKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 712
>gi|254361252|ref|ZP_04977395.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
PHL213]
gi|452745241|ref|ZP_21945077.1| polynucleotide phosphorylase/polyadenylase [Mannheimia haemolytica
serotype 6 str. H23]
gi|153092748|gb|EDN73791.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
PHL213]
gi|452086634|gb|EME03021.1| polynucleotide phosphorylase/polyadenylase [Mannheimia haemolytica
serotype 6 str. H23]
Length = 716
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/686 (54%), Positives = 508/686 (74%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTVDY
Sbjct: 4 IVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPTT + K S LDL+V+GT+K
Sbjct: 124 SPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVSGTDK 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L A++FGHE+ ++ I I E V+ G+ + +W + LI+
Sbjct: 184 AVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLIN 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E ++ AY+I KQ+R I ++ + L E+ T+ I I+ LES+
Sbjct: 244 KVKALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLT-AEDETVSEGTIIDIITALESQ 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +I+ RID R V+ +R + I T +LPRTHGS+LFTRG+TQAL VATLGT RD Q
Sbjct: 303 IVRSRIIAGEPRIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L GE +D F+ HYN PP++ G+ GRIG PKRREIGHGRLAKR +L V+P +F Y
Sbjct: 363 IIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +AK +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPA 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEET T IDI+D+G + IA+ +
Sbjct: 543 PRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGN 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + RIE++ V++ ++Y G V R+ DFGA + IL GK+GL+HISQI+++RV +
Sbjct: 603 AAKAVMARIEEIVAEVEVNQIYNGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L Q+V+VKV+ ID +GRI+L+M
Sbjct: 663 DYLTVGQEVQVKVVEIDRQGRIRLTM 688
>gi|59711097|ref|YP_203873.1| polynucleotide phosphorylase [Vibrio fischeri ES114]
gi|75354543|sp|Q5E7L1.1|PNP_VIBF1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|59479198|gb|AAW84985.1| polynucleotide phosphorylase (PNPase) [Vibrio fischeri ES114]
Length = 709
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 513/691 (74%), Gaps = 1/691 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
N ++KSF+YG++ +++E G IARQAT++V+ S++DT + +VV+ K+ +FFPL
Sbjct: 1 MFANPVVKSFQYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+NP+++PD+ ++IG S AL+I+ +PF GP+G A+VG+I+G+ +LNP+ +L+ S LDL+V
Sbjct: 121 INPEVNPDMITMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A++FGHE+ ++ INAINE V +W ++
Sbjct: 181 SGTEGAVLMVESEADNLTEEEMLSAVVFGHEQQQVVINAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L ++I ++E K+ +AYQI K R I+ ++ L+ +EN +++ +++ I +
Sbjct: 241 TVLNARIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLV-SENEDVNLKEVHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID+LMGE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSI 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL+ M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + E+S+FAPR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I IA
Sbjct: 540 EAISGAREEISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++GK+YTG V+R+ DFGA + +L K+GL+HISQI+ +R
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEER 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + D L+ Q+V+ KVL ID +GRI+LS+
Sbjct: 660 IEKVADHLQVGQEVKTKVLEIDRQGRIRLSI 690
>gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
3655]
gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
3655]
Length = 709
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/689 (54%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ +K V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DGNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|16272192|ref|NP_438401.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
Rd KW20]
gi|1172546|sp|P44584.1|PNP_HAEIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd KW20]
Length = 709
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 506/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ+R I D+ + I E+ I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQ-ITAEDEEXSEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGVIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVNVKVVEIDRQGRIRLTM 688
>gi|419801849|ref|ZP_14327052.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK262]
gi|385192216|gb|EIF39622.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK262]
Length = 712
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/689 (54%), Positives = 504/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ I AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + I + I I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDAIKADMIAQ-ITAADEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S +APR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSSAAKNVMVRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVTVKVVEIDRQGRIRLTM 688
>gi|78048389|ref|YP_364564.1| polynucleotide phosphorylase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325924695|ref|ZP_08186133.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas perforans 91-118]
gi|123730263|sp|Q3BRP9.1|PNP_XANC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78036819|emb|CAJ24512.1| polynucleotide phosphorylase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544901|gb|EGD16246.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas perforans 91-118]
Length = 704
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/688 (55%), Positives = 504/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K++ +I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNEGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ +L + D+ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS + G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSSKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|407699976|ref|YP_006824763.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Black Sea 11']
gi|407249123|gb|AFT78308.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Black Sea 11']
Length = 724
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/697 (54%), Positives = 504/697 (72%), Gaps = 2/697 (0%)
Query: 57 IMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTST 116
I +KG + I KSF+YG + +++E G IARQAT++VL S++DT +L TVV K+ +
Sbjct: 15 IEIKGQ-IVTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKAD 73
Query: 117 YNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQI 176
+FFPLTV+Y EKAYAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NE+Q+
Sbjct: 74 QDFFPLTVNYQEKAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFKNEVQV 133
Query: 177 VVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKS 236
VV V+S NP I DI S+IG S AL+IS +PF GP+G A+VGY +G+YILN E+ +S
Sbjct: 134 VVTVMSANPDIPTDIISMIGTSAALAISGIPFNGPIGAARVGYSNGEYILNTRAEEQAES 193
Query: 237 HLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW 296
LDL+VAGTE A++ VESE+ L ED +L A++FGHE+M+ +NA+NE VG +K +W
Sbjct: 194 ELDLVVAGTEGAVLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVNEFAAEVGTEKWDW 253
Query: 297 DPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIND 356
P ++ L K+ ++E ++ AYQI +K R ++ +++I EN T D +
Sbjct: 254 TPEAENTALKDKVKALAEAEMTAAYQISDKLERKDAVTAATEKALAAII-AENETQDQKE 312
Query: 357 INCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALV 416
+ +L++LES ++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQALV
Sbjct: 313 VLDLLHELESDVVRSRILSGAPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQALV 372
Query: 417 VATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALL 476
ATLGT RD Q ID L G+ FMLHYN PP+ G+ G IG PKRREIGHGRLAKR +
Sbjct: 373 AATLGTERDAQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQ 432
Query: 477 PVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDG 536
V+P+ +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K
Sbjct: 433 AVMPSEEEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSD 492
Query: 537 EKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSY 596
+ V+LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK+ +
Sbjct: 493 DNFVVLSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQIALKQAKEARLH 552
Query: 597 ILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE 656
IL+ M + + ELS+FAPR+ T+KID KIRDVIGKGG+ IR +TEE+ T I+I D+
Sbjct: 553 ILKVMDEAIGGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIEDD 612
Query: 657 GIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHIS 716
G I I + A +IE++T +++GK Y G + R+ DFGA + +L GK+GL+HIS
Sbjct: 613 GTIKIFATERAKADIAISKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHIS 672
Query: 717 QISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
QI+ +RVN +TD+L+E Q V VKV+ ID + R++LS+
Sbjct: 673 QIAHERVNKVTDYLEEGQMVDVKVMEIDRQNRVRLSI 709
>gi|441503626|ref|ZP_20985628.1| Polyribonucleotide nucleotidyltransferase [Photobacterium sp. AK15]
gi|441428702|gb|ELR66162.1| Polyribonucleotide nucleotidyltransferase [Photobacterium sp. AK15]
Length = 707
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/689 (53%), Positives = 508/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ ++IE G +ARQAT++V+VS++DT + +VV K +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTIETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VGYI+ +++LNP+ +L++S LDL+VAG
Sbjct: 121 PDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNTELEESRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ +L E+ +L A++FGH++ + I AINE V +W+ ++
Sbjct: 181 TESAVLMVESEADRLSEEQMLQAVVFGHDQQQAVIKAINEFAAEVATPAWDWEAPAENTE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L + + +E ++ +AYQI K R I D+ +L+ EN +D +I +L L
Sbjct: 241 LKALVAEKAEARLVEAYQITEKMARYDQVGEIKNDVVEALL-AENEELDEREIRDMLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E K++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKKVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+ ++
Sbjct: 360 DAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S+FAPR+ T+KI+P KI+DVIGKGG+ IR LTEETGT I+I D+G + IA+
Sbjct: 540 INAPREDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +EA RRIE++T V++G++YTG V+R+ DFGA + ++ K+GL+HISQIS +R+
Sbjct: 600 EGTAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQISQERIE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D L+ Q+V+VKVL ID +GRI+LSM
Sbjct: 660 KVADHLEMGQEVKVKVLEIDRQGRIRLSM 688
>gi|417845955|ref|ZP_12491970.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21639]
gi|341953662|gb|EGT80164.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21639]
Length = 709
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 504/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+ID +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E + AY+I KQ R I D+ + I E+ I I I L
Sbjct: 241 LINKVKAIAEASLGDAYRITEKQARYEQIDAIKADVIAQ-ITAEDEEISEGKIVDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+ +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S +APR+ T+KIDP KI+DVIGKGG+TIR+LTEETGT IDI+D+G + IA+
Sbjct: 540 ISAPRADISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+S + + RIE++ V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DSNAAKNVMGRIEEIVAEVEAGAIYKGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVTVKVVEIDRQGRIRLTM 688
>gi|21243412|ref|NP_642994.1| polynucleotide phosphorylase [Xanthomonas axonopodis pv. citri str.
306]
gi|418520425|ref|ZP_13086474.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. malvacearum str. GSPB2388]
gi|81801072|sp|Q8PJ59.1|PNP_XANAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21108963|gb|AAM37530.1| polynucleotide phosphorylase [Xanthomonas axonopodis pv. citri str.
306]
gi|410703806|gb|EKQ62294.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. malvacearum str. GSPB2388]
Length = 704
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/688 (55%), Positives = 503/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K+ +I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ +L + D+ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|390992743|ref|ZP_10262962.1| polyribonucleotide nucleotidyltransferase [Xanthomonas axonopodis
pv. punicae str. LMG 859]
gi|372552506|emb|CCF69937.1| polyribonucleotide nucleotidyltransferase [Xanthomonas axonopodis
pv. punicae str. LMG 859]
Length = 704
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/688 (55%), Positives = 503/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K+ +I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ +L + D+ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEDWAAGDLAKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
aphrophilus NJ8700]
gi|422336698|ref|ZP_16417671.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus F0387]
gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
aphrophilus NJ8700]
gi|353346010|gb|EHB90297.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus F0387]
Length = 709
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/689 (54%), Positives = 502/689 (72%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S AL++S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L A++FGH++ ++ + AI E + G+ + +W +
Sbjct: 181 TDKAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+K+ I+E ++ AY+I KQ R I D+ + E+ + I I L
Sbjct: 241 LINKVKAIAEARLGDAYRITEKQARYEQIDVIKADVIAQFT-AEDEEVAEGKIIDIFTAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P +
Sbjct: 360 DAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ +K V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILSVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAV 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + Q+ RIE +T V+ G +Y G V RL DFGA + I+ K+GL+HISQI+ +RV
Sbjct: 600 DKNAVQDVMARIEDITAEVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 660 KVSDYLQVGQEVMVKVVEIDRQGRIRLTM 688
>gi|423685202|ref|ZP_17660010.1| polynucleotide phosphorylase/polyadenylase [Vibrio fischeri SR5]
gi|371495703|gb|EHN71298.1| polynucleotide phosphorylase/polyadenylase [Vibrio fischeri SR5]
Length = 709
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/691 (52%), Positives = 513/691 (74%), Gaps = 1/691 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
N ++KSF+YG++ +++E G IARQAT++V+ S++DT + +VV+ K+ +FFPL
Sbjct: 1 MFANPVVKSFQYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+NP+++PD+ ++IG S AL+I+ +PF GP+G A+VG+I+G+ +LNP+ +L+ S LDL+V
Sbjct: 121 INPEVNPDMITMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A++FGHE+ ++ INAINE V +W ++
Sbjct: 181 SGTEGAVLMVESEADNLTEEEMLSAVVFGHEQQQVVINAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L ++I ++E K+ +AYQI K R I+ ++ L+ +EN +++ +++ I +
Sbjct: 241 TVLNARIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLV-SENEDVNLKEVHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID+LMGE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSI 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL+ M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++GK+YTG V+R+ DFGA + +L K+GL+HISQI+ +R
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEER 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + D L+ Q+V+ KVL ID +GRI+LS+
Sbjct: 660 IEKVADHLQVGQEVKTKVLEIDRQGRIRLSI 690
>gi|381171257|ref|ZP_09880405.1| polyribonucleotide nucleotidyltransferase [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688326|emb|CCG36892.1| polyribonucleotide nucleotidyltransferase [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 704
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/688 (55%), Positives = 503/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+G AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K+ +I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ +L + D+ +LE
Sbjct: 243 TALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|332289494|ref|YP_004420346.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
UMN179]
gi|330432390|gb|AEC17449.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
UMN179]
Length = 718
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/687 (53%), Positives = 513/687 (74%), Gaps = 2/687 (0%)
Query: 69 IKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIE 128
+K FKYG + +++E G +ARQAT++V+ S++DT + TVV+ K+ +FFPLTV+Y E
Sbjct: 5 VKQFKYGQHTVTLETGAMARQATAAVMASMDDTCVFVTVVAKKEVKEGQDFFPLTVNYQE 64
Query: 129 KAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQID 188
++YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+LNEIQI+ V+SVNPQI
Sbjct: 65 RSYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQIS 124
Query: 189 PDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA 248
PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAGT+KA
Sbjct: 125 PDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMSEQKQSRLDLVVAGTDKA 184
Query: 249 IITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK 308
++ VESE+ L E+ +L A++FGH++ ++ I AI E G+ + +W K++ LI++
Sbjct: 185 VLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAAEAGKPRWDWQAPAKNEALINR 244
Query: 309 IINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLES 366
I +SE ++ +AY+I KQ R I D+ ++++ ++E+ +I I I+++LES
Sbjct: 245 IKELSEARLGEAYRITEKQARYEQIDVIKADVCATVLAENSEDESITEGKIIDIIHELES 304
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
+++R +IL RID R V+ +R + I TG+LPRTHGS++FTRG+TQ+L V TLGT RD
Sbjct: 305 RVVRSRILAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVTTLGTERDA 364
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q ID L GE TD F+ HYN PP++ G+ G IG PKRREIGHGRLAKR + V+P +F
Sbjct: 365 QIIDELTGERTDHFLFHYNFPPYSVGETGLIGSPKRREIGHGRLAKRGVAAVMPTLEEFP 424
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
Y +R+VSEITESNGSSSMASVCG L+L+DAGVPI VAGIAMGL+K+ +K V+LSDIL
Sbjct: 425 YVVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAAVAGIAMGLVKEEDKFVVLSDIL 484
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M+ +
Sbjct: 485 GDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILNVMEQAIQ 544
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ ++S FAPR+ T+KIDP KI+DVIGKGG+ IR+LTEETGT IDI+D+G + IA+ ++
Sbjct: 545 TPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGTSIDIDDDGTVKIAATDN 604
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+ + RIE + V++ K+Y G V R+ DFGA + +L K+GL+HISQIS +RV +
Sbjct: 605 NAAKAVMSRIEDIVAEVEVNKIYQGKVTRIVDFGAFVVVLGNKEGLVHISQISDERVEKV 664
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
+D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 665 SDYLQVGQEVMVKVVEIDRQGRIRLTM 691
>gi|407070552|ref|ZP_11101390.1| polynucleotide phosphorylase/polyadenylase [Vibrio cyclitrophicus
ZF14]
Length = 706
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/692 (53%), Positives = 508/692 (73%), Gaps = 4/692 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++KSF+YG++ +++E G IARQAT++V+ +++DT + +VV+ K+ + +FFPL
Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVIARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+NP ++PD+ ++I S AL+IS PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A++FGH++ ++ I AINE V NW+ +
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCIL 361
L +K+ +E ++ AYQI K R I D+ +LI +ENL D +I +L
Sbjct: 241 TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKNDVVETLIAQDENL--DEREIRGML 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE ++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLG
Sbjct: 299 GSLEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID+LMGE D+F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 359 TQRDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+
Sbjct: 419 VDEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I I
Sbjct: 539 DEAISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + +EA RRIE++T V++G++Y G V RL DFGA + IL GKDGL+HISQI+ K
Sbjct: 599 AATEGAAAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L E Q+V VKVL ID +GR++LSM
Sbjct: 659 RVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSM 690
>gi|317493630|ref|ZP_07952051.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316918573|gb|EFV39911.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 704
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/690 (53%), Positives = 510/690 (73%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG +++E G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+P E ET+I+RLIDRPIRPLFPEG+LNE+Q+V V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTT++L++S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I I L G+ + W ++
Sbjct: 181 GTEGAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIENIKALAAEAGKPRWEWTAPAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E +I AY I KQ R I D+ ++L E+ +++ +I +L
Sbjct: 241 ALHARVAALAEARIGDAYHITEKQARYAQIDQIKADVIAAL-QAEDESLNAGEIADVLGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNIDGLTGEQTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LT+ETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDNEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|262401655|ref|ZP_06078221.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
gi|262352072|gb|EEZ01202.1| polyribonucleotide nucleotidyltransferase [Vibrio sp. RC586]
Length = 709
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/691 (54%), Positives = 514/691 (74%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+G+ NE+Q++V V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIVTVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + INAINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAALL-AENEALDAKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>gi|384227802|ref|YP_005619547.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ak (Acyrthosiphon kondoi)]
gi|345538742|gb|AEO08719.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ak (Acyrthosiphon kondoi)]
Length = 707
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/692 (56%), Positives = 512/692 (73%), Gaps = 5/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + I++E G +ARQAT++++ S++DT + TVV K FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTITLETGVMARQATAAIMASMDDTAVFVTVVGQKKIHGGQKFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
++Y E+ YAAGRIPG FF+REG+PSE E + +RLIDRPIRPLFP+ +LNEIQI+ V+SV
Sbjct: 61 INYQERTYAAGRIPGGFFRREGRPSENEILTARLIDRPIRPLFPKNFLNEIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI SIIG S ALS+S +PF GP+G A+VGYI+ +Y+LNP ++ +K S LDL+V+
Sbjct: 121 NPQINPDIISIIGASAALSLSGIPFYGPVGAARVGYINNQYMLNPISDDMKNSSLDLVVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW--DPIVK 301
GT+ AI+ VE+ESK L E+ IL AIIFGH++ ++ IN I L K+ W
Sbjct: 181 GTQNAILMVEAESKILSEEQILGAIIFGHQQQQVVINNIRSLSNEA--SKLPWVISYPET 238
Query: 302 DKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCIL 361
+KTL SKIIN+SE I AY I NKQ R NI ++I ++ EN IDI +I I
Sbjct: 239 NKTLESKIINLSEKDISNAYFIFNKQERIEKLNNIKENIIKLFLE-ENSNIDILEIEDIF 297
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+E KI+R++IL +RID R + IR + IRTGILPRTHGS+LFTRG+TQ+LV TLG
Sbjct: 298 QAIEKKIVRERILSHQIRIDGREKDMIRALDIRTGILPRTHGSALFTRGETQSLVSVTLG 357
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
TSRD Q +D L+G+ D+F+ HYN PP++ G+IG +G PKRREIGHGRLAKR+LL V+P
Sbjct: 358 TSRDAQNLDELLGDRIDNFLFHYNFPPYSVGEIGMVGSPKRREIGHGRLAKRSLLAVMPT 417
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G K V+
Sbjct: 418 LDNFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGNKYVL 477
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKV+GT GITALQMD+KI GIT +II AL +A+ +IL M
Sbjct: 478 LSDILGDEDHLGDMDFKVSGTEEGITALQMDMKIEGITNEIIHAALNEARLARLHILNVM 537
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ K ++E+S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + I
Sbjct: 538 NQALNKSRSEISEFAPRIHTIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTVKI 597
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
+S + A RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQIS K
Sbjct: 598 SSTIEEKAKNAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVSIGLGKEGLVHISQISDK 657
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV+ +++ LK +Q + VKVL ID +GR++LS+
Sbjct: 658 RVDKVSNHLKIDQMISVKVLEIDRQGRLRLSI 689
>gi|258543760|ref|ZP_05703994.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
ATCC 15826]
gi|258520996|gb|EEV89855.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium hominis
ATCC 15826]
Length = 693
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/683 (54%), Positives = 513/683 (75%), Gaps = 2/683 (0%)
Query: 71 SFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKA 130
+F YG +++++E GEIARQA +V+V++E TV+L T V+ K +FFPLTVDY EK+
Sbjct: 6 TFSYGKHQVTLESGEIARQADGAVMVNMEGTVVLVTAVAKKTVAEGQDFFPLTVDYQEKS 65
Query: 131 YAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPD 190
YAAGRIPG +F+REG+PSE ET++SRLIDRP+RPLFPEG+ NE+Q++ V+SVNP I PD
Sbjct: 66 YAAGRIPGGYFRREGRPSENETLVSRLIDRPLRPLFPEGFFNEVQVIASVMSVNPDISPD 125
Query: 191 IASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAII 250
I ++IG S A+++S +PF GP+G A+VGY +G Y+LNP+ ++L+ S LDL+VAGTE A++
Sbjct: 126 IPAMIGASAAIALSGVPFNGPIGAARVGYKNGAYLLNPSDKELQTSDLDLVVAGTEGAVL 185
Query: 251 TVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKII 310
VES++ +LPED++L A+++GHE+M++ INAI EL G+ +W P D+ LI+K+
Sbjct: 186 MVESQANELPEDVMLGAVMYGHEQMQVVINAIRELAAKAGKPAWDWQPAPADEALIAKVR 245
Query: 311 NISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIR 370
++ K+ AYQI +KQ R + + ++L+ + + + ++DLE +++R
Sbjct: 246 ELAHDKLVAAYQIADKQERQAAVAAVHEAAQAALVSEDGW--NAAAVGNTVHDLEYRVVR 303
Query: 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKID 430
+IL K RID R +RPI+IRTG+LPR HGS+LFTRG+TQALVVATLGT RD Q ID
Sbjct: 304 DRILAKEPRIDGRDTVTVRPITIRTGVLPRVHGSALFTRGETQALVVATLGTGRDAQIID 363
Query: 431 ALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIR 490
AL GE+ D FMLHYN PPF+ G+ GR+G PKRREIGHGRLA+R + +LP + F Y+IR
Sbjct: 364 ALTGEYRDIFMLHYNFPPFSVGETGRVGSPKRREIGHGRLARRGVTAILPPESTFPYTIR 423
Query: 491 LVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDED 550
+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ +LSDILGDED
Sbjct: 424 VVSEITESNGSSSMASVCGTSLALMDAGVPVKTPVAGIAMGLVKEGERFTVLSDILGDED 483
Query: 551 RCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKN 610
GDMDFKVAG+ NG+TALQMDIKI GIT +I++ AL +AK G +ILE M + + +
Sbjct: 484 HLGDMDFKVAGSANGVTALQMDIKIDGITREIMEQALTQAKAGRLHILEIMNQAIAQPRA 543
Query: 611 ELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQ 670
E+S++APR T++ID KI+DVIGKGG+TIR++TE TGT I+I D+G I IA+ + +
Sbjct: 544 EISEYAPRFTTLRIDVEKIKDVIGKGGATIRSITETTGTTIEIEDDGTIKIAAVDKTAAD 603
Query: 671 EAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFL 730
+A+R IE++T +IG++Y V+++ DFGA + L GK+GL+H+SQI+ RVN + D L
Sbjct: 604 DARRIIEEITAEPEIGRIYDAKVVKITDFGAFVAFLPGKEGLVHVSQIAEHRVNNVEDEL 663
Query: 731 KENQKVRVKVLGIDDRGRIKLSM 753
Q+V+VK+L ID +GR++LS+
Sbjct: 664 SVGQEVKVKLLEIDRQGRVRLSI 686
>gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
ATCC 33393]
gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
ATCC 33393]
Length = 742
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/698 (54%), Positives = 506/698 (72%), Gaps = 7/698 (1%)
Query: 62 NFLFNK------IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
+LF K I+K FKYG + +++E G IARQAT++V+ S++DT + VV+ KD
Sbjct: 25 EYLFKKENIVDPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVAVVAKKDVKE 84
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ
Sbjct: 85 GQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQ 144
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
+V V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPT + K+
Sbjct: 145 VVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQ 204
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAGT+KA++ VESE+ L E+ +L A+++GH++ ++ I AI ELV G+ + +
Sbjct: 205 SRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWD 264
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W + LI+K+ ++E ++ AY+I KQ R I D+ + I E+ +
Sbjct: 265 WVAPEPNTDLINKVKALAEARLGDAYRITEKQARYEQIDAIKADVVAQ-ITAEDEEVSEG 323
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 324 KIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 383
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 384 AVATLGTERDAQIIDELTGERQDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 443
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 444 AAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 503
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+K V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 504 DDKFVVLSDILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARM 563
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D
Sbjct: 564 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 623
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ + + Q+ RIE +T V+ G +Y G V RL DFGA + I+ K+GL+HI
Sbjct: 624 DGTVKIAAVDKNAVQDVMARIEDITAEVEAGAIYKGKVTRLADFGAFVSIVGNKEGLVHI 683
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 684 SQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 721
>gi|365836772|ref|ZP_09378159.1| polyribonucleotide nucleotidyltransferase [Hafnia alvei ATCC 51873]
gi|364563454|gb|EHM41263.1| polyribonucleotide nucleotidyltransferase [Hafnia alvei ATCC 51873]
Length = 704
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/690 (53%), Positives = 510/690 (73%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG +++E G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+P E ET+I+RLIDRPIRPLFPEG+LNE+Q+V V+SV
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPTT++L++S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGH++ ++ I I L G+ + W ++
Sbjct: 181 GTEGAVLMVESEAQLLSEDQMLGAVVFGHDQQQVVIENIKALAAEAGKPRWEWTAPAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E +I AY I KQ R I D+ ++L E+ +++ +I +L
Sbjct: 241 ALHARVAALAEARIGDAYHITEKQARYAQIDQIKADVIAAL-QAEDESLNAGEIADVLGS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQNIDGLTGEQTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LT+ETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDNEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 689
>gi|407692428|ref|YP_006817217.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus suis
H91-0380]
gi|407388485|gb|AFU18978.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus suis
H91-0380]
Length = 713
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/689 (54%), Positives = 504/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+ +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTISEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W +
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKETGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+++ ++E +I AY+I KQ R I D+ + L + TI I I+ L
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLTAQDE-TISEGAIVDIITAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES ++R +IL RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESSVVRGRILAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +L V+P +
Sbjct: 360 DAQIIDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +AK +IL M+
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 540 IPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ + + RIE + V++ +Y G V R+ DFGA + IL GK+GL+HISQI+++RV
Sbjct: 600 DNNAAKIVMARIEDIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITNERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L Q+V VKV+ ID + RI+L+M
Sbjct: 660 RVADYLSVGQEVTVKVVEIDRQNRIRLTM 688
>gi|420591446|ref|ZP_15084878.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-09]
gi|391457028|gb|EIR16005.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-09]
Length = 684
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/668 (55%), Positives = 503/668 (75%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAGRIPGSFF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SVNPQI+PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIVALIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VG+I+ +Y+LNPTT++LK+S LDL+VAGT A++ VESE+ L E+ +L
Sbjct: 122 IPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTAGAVLMVESEADILSEEQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ ++ I IN LV G+ K +W ++ L +++ ++E ++ AY+I
Sbjct: 182 GAVVFGHEQQQVVIENINALVAEAGKPKWDWQAEPVNEALHARVAELAEARLGDAYRITE 241
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I D+ +L+ ++ T+D +I IL +E ++R ++L RID R
Sbjct: 242 KQERYTQVDAIKADVTEALLAQDD-TLDAAEIQDILASVEKNVVRSRVLRGEPRIDGREK 300
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ IR + +RTGILPRTHGS+LFTRG+TQALV ATLGT+RD Q ID LMGE TDSF+LHYN
Sbjct: 301 DMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLLHYN 360
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ ++F Y+IR+VSEITESNGSSSMA
Sbjct: 361 FPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEITESNGSSSMA 420
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +G
Sbjct: 421 SVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDG 480
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
+TALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ T+KI+
Sbjct: 481 VTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISEFAPRIYTMKIN 540
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LT+ETGT I+I D+G I IA+ + + A RRIE++T +++
Sbjct: 541 PEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAATDGDKAKHAIRRIEEITAEIEV 600
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q V VKV+ +D
Sbjct: 601 GRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDR 660
Query: 746 RGRIKLSM 753
+GRI+LS+
Sbjct: 661 QGRIRLSI 668
>gi|84387281|ref|ZP_00990302.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
gi|84377928|gb|EAP94790.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus 12B01]
Length = 706
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/692 (53%), Positives = 507/692 (73%), Gaps = 4/692 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++KSF+YG++ +++E G +ARQAT++V+ +++DT + +VV+ K+ + +FFPL
Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+NP ++PD+ ++I S AL+IS PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A+++GH++ ++ I AINE V NW+ +
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCIL 361
L +K+ +E ++ AYQI K R I D +LI +ENL D +I +L
Sbjct: 241 TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKSDTVEALIAQDENL--DEREIRGML 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE ++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLG
Sbjct: 299 GSLEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID+LMGE D+F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 359 TQRDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+
Sbjct: 419 VDEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I I
Sbjct: 539 DEAISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + QEA RRIE++T V++G++Y G V RL DFGA + IL GKDGL+HISQI+ K
Sbjct: 599 AATEGAAAQEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L E Q+V VKVL ID +GR++LSM
Sbjct: 659 RVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSM 690
>gi|212709941|ref|ZP_03318069.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
30120]
gi|212687453|gb|EEB46981.1| hypothetical protein PROVALCAL_00991 [Providencia alcalifaciens DSM
30120]
Length = 685
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/668 (54%), Positives = 511/668 (76%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
IARQAT++V+V+++DT + T V+ K +FFPLTV+Y E+ YAAGRIPGSFF+REG
Sbjct: 2 IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+P E ET+++RLIDRP+RPLFPEG+LNEIQI+ V+SVNPQ++PDI ++IG S AL++S
Sbjct: 62 RPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASAALALSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VG+I+ +Y+LNPT ++LK S LDL+VAGT+ A++ VESE++ L E+ +L
Sbjct: 122 VPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVAGTDSAVLMVESEAELLSEEQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGH++ ++ I INELV+ G++K +W P ++ L ++ ++E ++ AY+I
Sbjct: 182 GAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQALHDRVAALAESRMGDAYRITE 241
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I +++ +L+ E+ +D+++++ IL LE +++R +++ RID R
Sbjct: 242 KQERYAQVDLIKEEVIGALV-AEDENVDVSEVSDILAHLEKQVVRSRVIRGEPRIDGREK 300
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT RD Q ID LMGE+TD F+ HYN
Sbjct: 301 DMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTDRFLFHYN 360
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +F Y++R+VSEITESNGSSSMA
Sbjct: 361 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQAEFPYTVRVVSEITESNGSSSMA 420
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +G
Sbjct: 421 SVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDFVVLSDILGDEDHLGDMDFKVAGSRDG 480
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
I+ALQMDIKI GIT +I+Q+AL +AK +IL M+ + + E+S+FAPR+ TI+I+
Sbjct: 481 ISALQMDIKIEGITREIMQVALNQAKGARLHILSTMEQAINSPREEISEFAPRIYTIRIN 540
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + +EA RRIE +T V++
Sbjct: 541 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLKAKEAIRRIEDITAEVEV 600
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL ID
Sbjct: 601 GRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEIDR 660
Query: 746 RGRIKLSM 753
+GRI+LSM
Sbjct: 661 QGRIRLSM 668
>gi|407683714|ref|YP_006798888.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'English Channel 673']
gi|407245325|gb|AFT74511.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'English Channel 673']
Length = 724
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/698 (54%), Positives = 504/698 (72%), Gaps = 4/698 (0%)
Query: 57 IMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTST 116
I +KG + I KSF+YG + +++E G IARQAT++VL S++DT +L TVV K+ +
Sbjct: 15 IEIKGQ-IVTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKAD 73
Query: 117 YNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQI 176
+FFPLTV+Y EKAYAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NE+Q+
Sbjct: 74 QDFFPLTVNYQEKAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFKNEVQV 133
Query: 177 VVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKS 236
VV V+S NP I DI S+IG S AL+IS +PF GP+G A+VGY +G+YILN E+ +S
Sbjct: 134 VVTVMSANPDIPTDIISMIGTSAALAISGIPFNGPIGAARVGYSNGEYILNTRAEEQAES 193
Query: 237 HLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW 296
LDL+VAGTE A++ VESE+ L ED +L A++FGHE+M+ +NA+NE VG +K +W
Sbjct: 194 ELDLVVAGTEGAVLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVNEFAAEVGTEKWDW 253
Query: 297 DPIVKDKTLISKIINISEHKIRKAYQIKNK-QIRDLTFKNISKDIYSSLIDNENLTIDIN 355
P ++ L K+ ++E ++ AYQI +K + +D K + + L ++E D
Sbjct: 254 APEAENTALKDKVKALAEAEMTAAYQISDKLERKDAVTAATEKALEAILAEDEEQ--DKK 311
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
++ +L+DLES ++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQAL
Sbjct: 312 EVLDLLHDLESDVVRSRILSGAPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAL 371
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
V ATLGT RD Q ID L G+ FMLHYN PP+ G+ G IG PKRREIGHGRLAKR +
Sbjct: 372 VAATLGTERDAQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGI 431
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P+ +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K
Sbjct: 432 QAVMPSEEEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKS 491
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+ V+LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK+
Sbjct: 492 DDNFVVLSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQIALKQAKEARL 551
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL+ M + + ELS+FAPR+ T+KID KIRDVIGKGG+ IR +TEE+ T I+I D
Sbjct: 552 HILKVMDEAIGGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIED 611
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G I I + A +IE++T +++GK Y G + R+ DFGA + +L GK+GL+HI
Sbjct: 612 DGTIKIFATERAKADIAISKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHI 671
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RVN +TD+L+E Q V VKV+ ID + R++LS+
Sbjct: 672 SQIAHERVNKVTDYLEEGQMVDVKVMEIDRQNRVRLSI 709
>gi|294634519|ref|ZP_06713054.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
23685]
gi|291092033|gb|EFE24594.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
23685]
Length = 713
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/696 (52%), Positives = 512/696 (73%), Gaps = 1/696 (0%)
Query: 58 MMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTY 117
M + L ++ F+YG + +++E G +ARQAT++V+V+++DT + TVV K
Sbjct: 1 MKRKMTLLTPTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQ 60
Query: 118 NFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIV 177
+FFPLTV+Y E+AYAAGR PG FF+REG+P E ET+I+RLIDRPIRPLFPEG+LNE+Q+V
Sbjct: 61 DFFPLTVNYQERAYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVV 120
Query: 178 VYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSH 237
V+SVNPQ+ PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S
Sbjct: 121 ATVVSVNPQVSPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSR 180
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGT+ A++ VESE+ L ED +L A++FGH++ ++ I I L VG+ + W
Sbjct: 181 LDLVVAGTDNAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWS 240
Query: 298 PIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDI 357
+ L ++ ++E ++ +AY I KQ R I + + + L+ E+ ++D +I
Sbjct: 241 APEVNTALQQRVSEMAEARLGEAYHITEKQARYAKVDEIKESVIADLL-AEDASLDAGEI 299
Query: 358 NCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVV 417
+ IL LE ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV
Sbjct: 300 SDILGALEKSVVRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVT 359
Query: 418 ATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP 477
ATLGT RD Q ID LMGE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L
Sbjct: 360 ATLGTERDAQNIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLA 419
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE 537
V+P+ +F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ +
Sbjct: 420 VMPSQEEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQD 479
Query: 538 KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
V+LSDILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK +I
Sbjct: 480 NFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHI 539
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
L M+ + + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G
Sbjct: 540 LSVMEQAINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDG 599
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQ 717
+ IA+ + + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQ
Sbjct: 600 TVKIAATDGDKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQ 659
Query: 718 ISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I+ KRV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 IADKRVEKVTDYLQMGQEVAVKVLEVDRQGRVRLSI 695
>gi|254446979|ref|ZP_05060446.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HTCC5015]
gi|198263118|gb|EDY87396.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HTCC5015]
Length = 698
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/690 (53%), Positives = 496/690 (71%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I K F +G ++IE GE+ARQAT SV+V++ DTV+L T K+ FFPLTV
Sbjct: 1 MTAIKKQFDFGGVPVTIETGEVARQATGSVIVNMNDTVVLVTATGRKEAKPDQAFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPGSFFKREG+PSE+ET+ +RLIDRPIRPLFP+G++NE+QIV V+S+N
Sbjct: 61 NYQEKTYAAGKIPGSFFKREGRPSEKETLTARLIDRPIRPLFPKGFMNEVQIVATVVSLN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++DP++ ++IG S ALSIS +PF GP+G A+VGY DG+Y+LNP+ L+ S L L VAG
Sbjct: 121 PEVDPEVPAMIGTSAALSISGIPFDGPIGAAQVGYRDGEYLLNPSKTDLETSDLALTVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ L EDI+L A++FGHEKM+ + A+ EL + VG ++ ++ +
Sbjct: 181 TEDAVLMVESEANCLSEDIMLGAVMFGHEKMQAVVQAVKELAEEVGTERWVFEEAEANVE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYD 363
L + + ++ + +AY I +K R I + L E + +++ +
Sbjct: 241 LEQAVASAAQQDLGEAYTIADKMDRYQRIGEIRDAVVEQLAAAEGEEGPEADEVKSVFAK 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE I+R +IL RID R +RPIS++TG+LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 301 LEKNIVRSRILAGEKRIDGRDTRTVRPISVKTGVLPRTHGSALFTRGETQALVVTTLGTE 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE+ D+F+ HYN PP+ G+ G IG PKRREIGHG+LAKR + V+P +
Sbjct: 361 RDAQLIDDLAGEYKDNFLFHYNFPPYCVGETGFIGSPKRREIGHGKLAKRGVQAVMPAQD 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR VSEITESNGSSSMASVCG LA++DAGVP+ VAGIAMGLIK+G++ +L+
Sbjct: 421 DFPYTIRAVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGDQFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTDGGVTALQMDIKIQGITREIMAQALEEAKAGRLHILGEMAK 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
E+ K + ELS+ APR IT+KI P KI DVIGKGG+TIR +TEETG +DI D+G I IAS
Sbjct: 541 ELDKPREELSQHAPRYITVKIHPDKIGDVIGKGGATIRGITEETGASVDIEDDGTIKIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ G+ AK+ +E+LT +++GK+Y G V+ + +FGA + IL GKDGL+HISQI+ +RV
Sbjct: 601 VKAEDGERAKKMVEELTAEIEVGKIYEGKVVGIKEFGAFVNILPGKDGLVHISQIAQERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD L E Q+VRVKVL +D +GR++LSM
Sbjct: 661 ENVTDHLSEGQEVRVKVLEVDRQGRVRLSM 690
>gi|197336129|ref|YP_002155245.1| polynucleotide phosphorylase/polyadenylase [Vibrio fischeri MJ11]
gi|226704830|sp|B5FA83.1|PNP_VIBFM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|197317619|gb|ACH67066.1| polyribonucleotide nucleotidyltransferase [Vibrio fischeri MJ11]
Length = 709
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/691 (52%), Positives = 512/691 (74%), Gaps = 1/691 (0%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
N ++KSF+YG++ +++E G IARQAT++V+ S++DT + +VV+ K+ +FFPL
Sbjct: 1 MFANPVVKSFQYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+NP+++PD+ ++IG S AL+I+ +PF GP+G A+VG+I+G+ +LNP+ +L+ S LDL+V
Sbjct: 121 INPEVNPDMITMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A++FGH++ ++ I AINE V +W ++
Sbjct: 181 SGTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L S+I ++E K+ +AYQI K R I+ ++ L+ +EN +++ +++ I +
Sbjct: 241 TVLNSRIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLV-SENEDVNLKEVHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID+LMGE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSI 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL+ M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++GK+YTG V+R+ DFGA + +L K+GL+HISQI+ +R
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEER 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + D L+ Q+V+ KVL ID +GRI+LS+
Sbjct: 660 IEKVADHLQVGQEVKTKVLEIDRQGRIRLSI 690
>gi|451966448|ref|ZP_21919701.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda NBRC
105688]
gi|451314749|dbj|GAC65063.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda NBRC
105688]
Length = 707
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/690 (53%), Positives = 510/690 (73%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ ++ F+YG + +++E G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLTPTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+AYAAGR PG FF+REG+P E ET+I+RLIDRPIRPLFPEG+LNE+Q+V V+SV
Sbjct: 61 VNYQERAYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S AL++S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L ED +L A++FGH++ ++ I I L VG+ + W +
Sbjct: 181 GTDNAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWSAPEVNT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ +AY I KQ R I + + + L+ E+ ++D +I+ IL
Sbjct: 241 ALQQRVSEMAEARLGEAYHITEKQARYAKVDEIKESVIADLL-AEDASLDAGEISDILGA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKSVVRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+
Sbjct: 360 RDAQNIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ + V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVAVKVLEVDRQGRVRLSI 689
>gi|384419824|ref|YP_005629184.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|353462738|gb|AEQ97017.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 704
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/688 (55%), Positives = 503/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+ AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K+ +I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ +L + D+ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS + G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|424105070|ref|ZP_17839813.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1990]
gi|390661359|gb|EIN39017.1| polyribonucleotide nucleotidyltransferase [Escherichia coli
FRIK1990]
Length = 677
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/656 (55%), Positives = 502/656 (76%), Gaps = 1/656 (0%)
Query: 98 IEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRL 157
++DT + TVV K +FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RL
Sbjct: 1 MDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARL 60
Query: 158 IDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKV 217
IDRPIRPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S +PF GP+G A+V
Sbjct: 61 IDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARV 120
Query: 218 GYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKI 277
GYI+ +Y+LNPT ++LK+S LDL+VAGTE A++ VESE++ L ED +L A++FGHE+ ++
Sbjct: 121 GYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQV 180
Query: 278 AINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNIS 337
I INELV+ G+ + +W P ++ L +++ ++E ++ AY+I +KQ R I
Sbjct: 181 VIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIK 240
Query: 338 KDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGI 397
+ ++L+ E+ T+D N++ IL+ +E ++R ++L RID R + IR + +RTG+
Sbjct: 241 SETIATLL-AEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGV 299
Query: 398 LPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRI 457
LPRTHGS+LFTRG+TQALV ATLGT+RD Q +D LMGE TD+F+ HYN PP++ G+ G +
Sbjct: 300 LPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMV 359
Query: 458 GVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDA 517
G PKRREIGHGRLAKR +L V+P+ +KF Y++R+VSEITESNGSSSMASVCG LAL+DA
Sbjct: 360 GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDA 419
Query: 518 GVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFG 577
GVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +GI+ALQMDIKI G
Sbjct: 420 GVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 479
Query: 578 ITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGG 637
IT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIKI+P KI+DVIGKGG
Sbjct: 480 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 539
Query: 638 STIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLF 697
S IR LTEETGT I+I D+G + IA+ + + A RRIE++T +++G+VYTG V R+
Sbjct: 540 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIV 599
Query: 698 DFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 600 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 655
>gi|384228360|ref|YP_005620095.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ua (Uroleucon ambrosiae)]
gi|345539293|gb|AEO08160.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ua (Uroleucon ambrosiae)]
Length = 696
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/693 (55%), Positives = 517/693 (74%), Gaps = 7/693 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N II+ F+YG + I++E G +ARQAT++V+ S++DT + TVV K S FFPLT
Sbjct: 1 MLNPIIRKFQYGQHTITLETGVMARQATAAVMASMDDTAVFVTVVGQKKIYSGQKFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPG FF+REG+PSE E +I+RLIDRPIRPLFP+ +LNE+QI+V V+SV
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSENEILIARLIDRPIRPLFPKNFLNEVQIIVTVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI SIIG S ALS+S +PF GP+G A+VG I+ +YILNP ++ +K S LDL+++
Sbjct: 121 NPQINPDIISIIGASAALSLSGIPFYGPIGAARVGLINNQYILNPISDDIKNSSLDLVIS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW---DPIV 300
GT+ AI+ VE+ESK L E+ +L AIIFGH++ ++ IN I K+ W P +
Sbjct: 181 GTQNAILMVEAESKILSEEQMLGAIIFGHQQQQVVINNIRSFSNEAS--KLPWVMSYPEI 238
Query: 301 KDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCI 360
+K L SKI ++S+ I AY I NKQ R NI +++ ++++ L +DI I I
Sbjct: 239 -NKILESKITSLSQQNISNAYLIFNKQERFEKLNNIKEEVIKVCLEDD-LNVDILVIEDI 296
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L ++E KI+RK+IL+ +RID R + IR + IRTGILPRTHGS+LFTRG+TQ+LV TL
Sbjct: 297 LQNIEKKIVRKRILNHQIRIDGREKDMIRALDIRTGILPRTHGSALFTRGETQSLVAVTL 356
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GTSRD Q +D L+G+ ++F+ HYN PP++ G+IG +G PKRREIGHGRLAKR+LL V+P
Sbjct: 357 GTSRDAQNLDELLGDRIENFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSLLAVMP 416
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
N F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+G+K V
Sbjct: 417 TLNDFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLIKEGKKYV 476
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT GIT+LQMD+KI GIT++II AL +A+ +IL
Sbjct: 477 LLSDILGDEDHLGDMDFKVAGTKEGITSLQMDMKIEGITHEIIHTALNEARSARLHILNV 536
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + K ++E+S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G +
Sbjct: 537 MNQALSKSRSEISEFAPRIHTIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTVK 596
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I+S A RRIE++T +++G++Y+G V R+ DFGA + I GK+GL+HISQIS
Sbjct: 597 ISSSVRERANNAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVSIGVGKEGLVHISQISK 656
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
KRV+ +++ L+ +Q + VKVL ID +GR++LS+
Sbjct: 657 KRVDKVSNHLRLDQVISVKVLEIDRQGRLRLSI 689
>gi|289207914|ref|YP_003459980.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
K90mix]
gi|288943545|gb|ADC71244.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
K90mix]
Length = 695
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/684 (55%), Positives = 499/684 (72%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
KSF+YG++ ++ E G+IARQA+ +VLV++ +TV+L T V+ K+ +FFPLTV+Y E+
Sbjct: 5 KSFQYGNHTVTFETGDIARQASGAVLVNMAETVVLVTAVARKEAEPGRDFFPLTVNYQER 64
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YAAG+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFPEG+ NE QIV V+S+NP +DP
Sbjct: 65 TYAAGKIPGGFFKREGRPNEKETLTSRLIDRPIRPLFPEGFKNETQIVATVMSINPDVDP 124
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI +++G S AL++S +PF GP+G A+VGY G+Y+LNPT L+ S LDL+VAGTE A+
Sbjct: 125 DIPALLGASAALALSGVPFAGPIGAARVGYRAGEYLLNPTYSALEDSDLDLVVAGTEHAV 184
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
+ VESE+ +L E+ +L A++FGHE+M+ AI AI EL G+ +W + +L ++
Sbjct: 185 LMVESEASELSEEAMLGAVMFGHEQMQAAIQAIKELAAEAGKPAWDWQAPPSEASLEDRV 244
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKII 369
+ +AYQI KQ R + ++ + D+ +DLE +++
Sbjct: 245 KEAVGSDLVEAYQIAEKQARTQRISELRSQAVEAIASEDESGPSAEDVKTAFHDLEYRLV 304
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R +ILD RID R +RPIS++T +LPRTHGS++FTRG+TQALVVATLGT RD Q I
Sbjct: 305 RDRILDGNPRIDGRDNKTVRPISVQTSVLPRTHGSAVFTRGETQALVVATLGTDRDAQVI 364
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DA+ GE D FMLHYN PP+ TG+ G +G PKRREIGHGRLAKR + V+P +F Y +
Sbjct: 365 DAIEGERRDRFMLHYNFPPYCTGETGFVGSPKRREIGHGRLAKRGVAAVMPKAEEFPYVV 424
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGLIK+G++ +LSDILGDE
Sbjct: 425 RVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFAVLSDILGDE 484
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NG+TALQMDIKI GIT +I++ AL +A++G +IL M +P +
Sbjct: 485 DHLGDMDFKVAGTTNGVTALQMDIKIDGITREIMEQALAQAREGRMHILGCMNEVLPSHR 544
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
E+S APR IT+KI+P KIRDVIGKGG+TIR LTEETG IDI D+G + +AS + +G
Sbjct: 545 EEMSSHAPRFITMKINPDKIRDVIGKGGATIRALTEETGATIDIQDDGTVKVASTDQAAG 604
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
EAKRRIE+LT +++G+ YTG V ++ DFGA + IL G+DGL+HISQIS +RV + DF
Sbjct: 605 LEAKRRIEELTADIEVGRQYTGKVAKIMDFGAFVSILPGRDGLVHISQISDERVENVADF 664
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
L E V VKVL +D +GRI+LSM
Sbjct: 665 LSEGDSVTVKVLEVDKQGRIRLSM 688
>gi|289665195|ref|ZP_06486776.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. vasculorum NCPPB 702]
gi|289667359|ref|ZP_06488434.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. musacearum NCPPB 4381]
Length = 704
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/688 (55%), Positives = 503/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+ AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K+ +I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ L + D++ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGVLAPRATIEGWAAGDLSKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS + G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|218710441|ref|YP_002418062.1| polynucleotide phosphorylase [Vibrio splendidus LGP32]
gi|254782746|sp|B7VJH3.1|PNP_VIBSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218323460|emb|CAV19637.1| polyribonucleotide nucleotidyltransferase [Vibrio splendidus LGP32]
Length = 706
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/692 (53%), Positives = 508/692 (73%), Gaps = 4/692 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++KSF+YG++ +++E G +ARQAT++V+ +++DT + +VV+ K+ + +FFPL
Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+NP ++PD+ ++I S AL+IS PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A+++GH++ ++ I AINE V NW+ +
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCIL 361
L +++ ++E ++ AYQI K R I D +LI +ENL D +I +L
Sbjct: 241 TELKAQVAELAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENL--DEREIRGML 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE ++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLG
Sbjct: 299 GSLEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID+LMGE D+F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 359 TQRDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+
Sbjct: 419 VDEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I I
Sbjct: 539 DEAISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + +EA RRIE++T V++G++Y G V RL DFGA + IL GKDGL+HISQI+ K
Sbjct: 599 AATEGAAAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L E Q+V VKVL ID +GR++LSM
Sbjct: 659 RVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSM 690
>gi|406596711|ref|YP_006747841.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
ATCC 27126]
gi|407687652|ref|YP_006802825.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Balearic Sea AD45']
gi|406374032|gb|AFS37287.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
ATCC 27126]
gi|407291032|gb|AFT95344.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
str. 'Balearic Sea AD45']
Length = 724
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/698 (54%), Positives = 503/698 (72%), Gaps = 4/698 (0%)
Query: 57 IMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTST 116
I +KG + I KSF+YG + +++E G IARQAT++VL S++DT +L TVV K+ +
Sbjct: 15 IEIKGQ-IVTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKAD 73
Query: 117 YNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQI 176
+FFPLTV+Y EKAYAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NE+Q+
Sbjct: 74 QDFFPLTVNYQEKAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFKNEVQV 133
Query: 177 VVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKS 236
VV V+S NP I DI S+IG S AL+IS +PF GP+G A+VG+ +G+YILN E+ +S
Sbjct: 134 VVTVMSANPDIPTDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAES 193
Query: 237 HLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW 296
LDL+VAGTE A++ VESE+ L ED +L A++FGHE+M+ +NA+NE VG +K +W
Sbjct: 194 ELDLVVAGTEGAVLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVNEFAAEVGTEKWDW 253
Query: 297 DPIVKDKTLISKIINISEHKIRKAYQIKNK-QIRDLTFKNISKDIYSSLIDNENLTIDIN 355
P ++ L K+ ++E ++ AYQI +K + +D K + + L ++E D
Sbjct: 254 APEAENTALKDKVKALAEAEMTAAYQISDKLERKDAVTAATEKALEAILAEDEEQ--DKK 311
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
++ +L+DLES ++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQAL
Sbjct: 312 EVLDLLHDLESDVVRSRILSGAPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAL 371
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
V ATLGT RD Q ID L G+ FMLHYN PP+ G+ G IG PKRREIGHGRLAKR +
Sbjct: 372 VAATLGTERDAQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGI 431
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P+ +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K
Sbjct: 432 QAVMPSEEEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKS 491
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+ V+LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK+
Sbjct: 492 DDNFVVLSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQIALKQAKEARL 551
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M + + ELS+FAPR+ T+KID KIRDVIGKGG+ IR +TEE+ T I+I D
Sbjct: 552 HILNVMDEAIGGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIED 611
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G I I + A +IE++T +++GK Y G + R+ DFGA + +L GK+GL+HI
Sbjct: 612 DGTIKIFATERAKADIAISKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHI 671
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RVN +TD+L+E Q V VKV+ ID + R++LS+
Sbjct: 672 SQIAHERVNKVTDYLEEGQMVDVKVMEIDRQNRVRLSI 709
>gi|357417776|ref|YP_004930796.1| polynucleotide phosphorylase/polyadenylase [Pseudoxanthomonas
spadix BD-a59]
gi|355335354|gb|AER56755.1| polynucleotide phosphorylase/polyadenylase [Pseudoxanthomonas
spadix BD-a59]
Length = 702
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/688 (53%), Positives = 510/688 (74%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG +++++E GEIARQA +V+V +DTV+L + V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHQVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKKAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
E+ YA GRIPG FFKREG+ +E+ET+ISRLIDRP+RPLFPE + NE+Q++ V+S+NP
Sbjct: 63 QERFYAGGRIPGGFFKREGRATEKETLISRLIDRPLRPLFPEEFRNEVQVIATVMSLNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI ++IG S A++++ PF GP+G AKVGYI+G+Y+LNPT +LK+S L+L+VAGT
Sbjct: 123 IDGDIPALIGASAAVALTGAPFSGPIGAAKVGYINGQYVLNPTVSELKESRLELVVAGTS 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ +L E+++L A++FGH +M+ I+ INELV G + NW +++ L+
Sbjct: 183 NAVLMVESEAAELSEEVMLGAVMFGHREMQKVIHVINELVVEAGTQSWNWSAPARNQALV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN-ENLTIDINDINCILYDLE 365
S + +++ +A+Q+++K R I D+ SL + +++ +LE
Sbjct: 243 SALEEAVGNRLAEAFQVRDKLQRRDAIAAIKSDVLESLAGRVQADGWSTAELSKEFSELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS + +LPRTHGS+LFTRG+TQA+VV TLGT+RD
Sbjct: 303 YQTLRGAVLSTKVRIDGRALDTVRPISAKVSVLPRTHGSALFTRGETQAIVVTTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ D+F+ HYN PP++ G+ GR+ PKRREIGHGRLAKR +L V+P +F
Sbjct: 363 GQVIDAVSGEYKDNFLFHYNFPPYSVGEAGRMMGPKRREIGHGRLAKRGVLAVMPTMEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG L+L+DAGVPI VAGIAMGL+K+G+ V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLSLMDAGVPIKAPVAGIAMGLVKEGDDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT NG++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTSNGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS+FAPRLITI+I P KIR+VIGKGG+ I+ +T+ETGTQIDI D+G ITIAS N
Sbjct: 543 TTPRQELSEFAPRLITIRIHPDKIREVIGKGGAVIQAITKETGTQIDIQDDGTITIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+GQ AK RIE++T ++ G++Y G V +L DFGA + I GKDGL+H+SQIS +RV
Sbjct: 603 GAAGQAAKARIEQITSDIEPGRIYEGKVAKLMDFGAFVTIAPGKDGLVHVSQISVERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE +RVKVL +D +GRI+LSM
Sbjct: 663 VSDKLKEGDLIRVKVLEVDKQGRIRLSM 690
>gi|238918428|ref|YP_002931942.1| polyribonucleotide nucleotidyltransferase, putative [Edwardsiella
ictaluri 93-146]
gi|259534121|sp|C5BFC1.1|PNP_EDWI9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|238867996|gb|ACR67707.1| polyribonucleotide nucleotidyltransferase, putative [Edwardsiella
ictaluri 93-146]
Length = 707
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/690 (53%), Positives = 508/690 (73%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ ++ F+YG + +++E G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLTPTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+AYAAGR PG FF+REG+P E ET+ +RLIDRPIRPLFPEG+LNE+Q+V V+SV
Sbjct: 61 VNYQERAYAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L ED +L A++FGHE+ +I I I L VG+ + W +
Sbjct: 181 GTDNAVLMVESEADLLSEDQMLGAVVFGHEQQQIVIENIKALAAEVGKPRWEWHAPEVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ +AY I KQ R I + + + L+ E+ +D +I+ IL
Sbjct: 241 ALQRRVAEMAEARLGEAYHITEKQARYAKVDEIKESVIADLL-AEDDALDAGEISDILGA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKAVVRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVAVKVLEVDRQGRVRLSI 689
>gi|86148613|ref|ZP_01066896.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
MED222]
gi|85833604|gb|EAQ51779.1| putative polyribonucleotide nucleotidyltransferase [Vibrio sp.
MED222]
Length = 706
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/692 (53%), Positives = 507/692 (73%), Gaps = 4/692 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++KSF+YG++ +++E G +ARQAT++V+ +++DT + +VV+ K+ + +FFPL
Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+NP ++PD+ ++I S AL+IS PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A+++GH++ ++ I AINE V NW+ +
Sbjct: 181 SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCIL 361
L +K+ +E ++ AYQI K R I D +LI +ENL D +I +L
Sbjct: 241 TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENL--DEREIRGML 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE ++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLG
Sbjct: 299 GSLEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID+LMGE D+F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 359 TQRDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPS 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+
Sbjct: 419 VDEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I I
Sbjct: 539 DEAISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + +EA RRIE++T V++G++Y G V RL DFGA + IL GKDGL+HISQI+ K
Sbjct: 599 AATEGAAAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADK 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV ++D+L E Q+V VKVL ID +GR++LSM
Sbjct: 659 RVEKVSDYLTEGQEVPVKVLEIDRQGRVRLSM 690
>gi|58582837|ref|YP_201853.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84624704|ref|YP_452076.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188577676|ref|YP_001914605.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|75434649|sp|Q5GXV3.1|PNP_XANOR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123739068|sp|Q2P0X5.1|PNP_XANOM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704832|sp|B2SVJ9.1|PNP_XANOP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|58427431|gb|AAW76468.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84368644|dbj|BAE69802.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188522128|gb|ACD60073.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 704
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/688 (55%), Positives = 502/688 (72%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+ AKVGY +G+YILNPT LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTDLKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K+ +I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELAVEAGTKPSDWVAPAKNDGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ +L + D+ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS + G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|365966470|ref|YP_004948032.1| LOW QUALITY PROTEIN: polynucleotide phosphorylase/polyadenylase
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|365745383|gb|AEW76288.1| LOW QUALITY PROTEIN: polynucleotide phosphorylase/polyadenylase
[Aggregatibacter actinomycetemcomitans ANH9381]
Length = 743
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/698 (53%), Positives = 506/698 (72%), Gaps = 1/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
L + K + N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ K
Sbjct: 26 LFICKKENIVNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKRCER 85
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
F P+ +Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ
Sbjct: 86 RSGFLPIDRNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQ 145
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
+V V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+I+G+++LNPT + K+
Sbjct: 146 VVATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQ 205
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+VAGT+KA++ VESE+ L E+ +L A+++GH++ ++ I AI ELV G+ + +
Sbjct: 206 SRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWD 265
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W + LI+K+ ++E ++ AY+I KQ R I D+ + I E+ +
Sbjct: 266 WVAPEPNTALINKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQ-ITAEDEEVSEG 324
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +I+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 325 KIIDIFTALESQIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 384
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 385 AVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 444
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 445 AAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 504
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+K V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 505 EDKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARM 564
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D
Sbjct: 565 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDD 624
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ + + Q+ RIE +T V++G Y G V+RL DFGA + I+ K+GL+HI
Sbjct: 625 DGTVKIAAVDKNAVQDVMARIEDITAEVEVGATYKGKVIRLADFGAFVAIVGNKEGLVHI 684
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L+ Q+V VKV+ ID +GRI+L+M
Sbjct: 685 SQIAEERVEKVSDYLQVGQEVMVKVVEIDRQGRIRLTM 722
>gi|325915559|ref|ZP_08177870.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
gi|325538275|gb|EGD09960.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
Length = 704
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/688 (55%), Positives = 504/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GEIARQA +V+V +DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DIA++IG S ALS++ PF GP+ AKVGY +G+YILNPT +LK S L+L+VAGT
Sbjct: 123 IDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L E+++L A+ FGH +M+ IN INEL G K +W K+ +I
Sbjct: 183 NAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDGMI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDI-NDINCILYDLE 365
+ + ++ A+Q+++K R I KD+ SL + + D++ +LE
Sbjct: 243 AALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGSLAPRATVEGWVAGDLSKEFGELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+ +R +L +RID R ++ +RPIS + G+LPRTHGS+LFTRG+TQA+V+ TLGT+RD
Sbjct: 303 YQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA+ GE+ ++F+ HYN PP++ G+ GR G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 363 GQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT G++ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ ELS + PRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS N
Sbjct: 543 TTPRQELSDYTPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIASVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS+RV
Sbjct: 603 AIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE VRVKVL +D +GRI+LS+
Sbjct: 663 VGDKLKEGDLVRVKVLEVDKQGRIRLSI 690
>gi|29654180|ref|NP_819872.1| polynucleotide phosphorylase [Coxiella burnetii RSA 493]
gi|154705957|ref|YP_001424300.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
Dugway 5J108-111]
gi|161829803|ref|YP_001596852.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
331]
gi|81629147|sp|Q83D87.1|PNP_COXBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610292|sp|A9KFK6.1|PNP_COXBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610293|sp|A9ND62.1|PNP_COXBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29541446|gb|AAO90386.1| hypothetical protein CBU_0852 [Coxiella burnetii RSA 493]
gi|154355243|gb|ABS76705.1| hypothetical protein CBUD_0917 [Coxiella burnetii Dugway 5J108-111]
gi|161761670|gb|ABX77312.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
331]
Length = 696
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/692 (52%), Positives = 507/692 (73%), Gaps = 3/692 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
NKI K+F+YG ++++ E GE+ARQAT +V+V + DTV+L +VV+ K+ +FFPLTV
Sbjct: 1 MNKIRKTFQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG +FKREG+P+E+ET+ SRLIDRP+RPLFP+G+ NE+Q++ VLSV+
Sbjct: 61 NYQEKTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
++ DI +I+G S A+ +S +PF G LG A+VGY G+Y+LNP+ ++LK S LDL+VAG
Sbjct: 121 SKVPTDIPAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+++LPE ++L A++ GH+ M++AI AI E +Q G K W+P +
Sbjct: 181 TRDAVLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI---DNENLTIDINDINCIL 361
L ++ SE ++KAYQI+ K R + I + + + E ++ +++ I
Sbjct: 241 LEKWVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIF 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
++LE +I+R+QIL RID R +RPI+++ G+LPR+HGS+LFTRG+TQALVV TLG
Sbjct: 301 HELERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID L G+ + F+ HYN PPF G++G + PKRREIGHGRLAKRA++PV+P
Sbjct: 361 TERDAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPT 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+KF Y IR+VSEI ESNGSSSMASVCG LAL+DAGVP VAGIAMGLIK+ +K +
Sbjct: 421 LDKFPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I++ AL +AK+G +IL M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ K ++++S AP+ +T+KI+P KIRDVIGKGG IR +TE T IDI+D+G I I
Sbjct: 541 NKVLDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKI 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + G+ AKRRIE+LT V++GKVY G V+++ DFGA ++IL GL+HISQI+ +
Sbjct: 601 AAHTTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQE 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+E Q +RVKV+ ID +GR++LSM
Sbjct: 661 RVENVRDYLEEGQVIRVKVIEIDRQGRVRLSM 692
>gi|386719326|ref|YP_006185652.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas
maltophilia D457]
gi|384078888|emb|CCH13482.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas
maltophilia D457]
Length = 702
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 513/690 (74%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI ++IG S AL+++ PF+GP+G AKVGY +G+YILNPT +L S L+L+VAGT
Sbjct: 123 VDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTS 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ INAINEL G K W+ K++ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNEALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ +A+Q+++K R I KD++ +L + E + +++ +
Sbjct: 243 SALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVFEALAGRVAAEGW--NPAELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R +LD +RID R ++ +RPI+++TG+LPRTHGSSLFTRG+TQA+V TLGT+
Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPITVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PPF+ G+ GR+ PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+LS
Sbjct: 421 SFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GI+ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMEQALQQAKAGRLHILGEMAH 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE V+VKVL +D +GRI+LSM
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSM 690
>gi|345871294|ref|ZP_08823241.1| Polyribonucleotide nucleotidyltransferase [Thiorhodococcus drewsii
AZ1]
gi|343920704|gb|EGV31433.1| Polyribonucleotide nucleotidyltransferase [Thiorhodococcus drewsii
AZ1]
Length = 698
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/687 (55%), Positives = 497/687 (72%), Gaps = 2/687 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K F++G+ + +E GEIARQA +V+V+++DTV+L TVV K+P +FFPLTVDY
Sbjct: 6 IVKQFQFGNQTVKLETGEIARQADGAVMVNMDDTVVLVTVVVNKNPGVERDFFPLTVDYQ 65
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FF+REG+PSE E + +RLIDRPIRPLF +G+ NE+QI+ V S+NP +
Sbjct: 66 EKTYAAGRIPGGFFRREGRPSESEILTARLIDRPIRPLFADGFTNEVQIIATVKSLNPAV 125
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK-SHLDLLVAGTE 246
+P++ ++IG S AL+I+ +PF GP+G A+VGY DG+Y+LNP L S LDL+VAGT+
Sbjct: 126 NPEVPALIGASAALAIAGVPFNGPIGAARVGYKDGEYLLNPPVIGLNPDSDLDLVVAGTD 185
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
KA++ VESE++ L E+++L A++FGHE+M++ I AI EL G+ ++ W P V L
Sbjct: 186 KAVLMVESEARGLSEEVMLGAVLFGHEQMQVVIEAIRELAAEAGKPQIEWTPSVVSPELA 245
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
+ N +I AY+IK KQ R L E+ ++ + + LES
Sbjct: 246 DAVANACGEQIAAAYRIKEKQERYNALTAARTAAKEQLCSEESSWSEMA-VKGAIEALES 304
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
KI+R IL RID R +RPI+IR G+LPRTHGSSLFTRG+TQA+V+ TLGT RD
Sbjct: 305 KIVRGSILAGNPRIDGRDNKTVRPITIRAGVLPRTHGSSLFTRGETQAMVITTLGTERDS 364
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q IDAL GE + FMLHYN PPF G++GR+G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 365 QIIDALDGERREHFMLHYNFPPFCVGELGRVGSPKRREIGHGRLAKRGVLAVMPSIEEFP 424
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAG+AMGLIK+ E+ +L+DI+
Sbjct: 425 YSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEAEEFAVLTDIM 484
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGT GI ALQMDIKI GIT +I++IAL +AK+G +IL +M +
Sbjct: 485 GDEDHLGDMDFKVAGTSEGINALQMDIKIEGITKEIMEIALAQAKEGRLHILGEMSKVMS 544
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
++E+S+ APR+I KI P KIRDVIGKGGS IR +TEETG IDIND+G+I I S
Sbjct: 545 SHRSEMSEHAPRIIEFKIHPEKIRDVIGKGGSVIRAITEETGATIDINDDGVIKIFSVEK 604
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+G+EAK+RI +T V++GKVY G V RL DFGA + IL G+DGL+HISQI +RV +
Sbjct: 605 AAGEEAKKRIRLITADVEVGKVYEGKVARLMDFGAFVTILPGRDGLVHISQICEERVQSV 664
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
+D L E VRVKVL +D +GRI+LSM
Sbjct: 665 SDKLSEGDAVRVKVLEVDKQGRIRLSM 691
>gi|336450011|ref|ZP_08620468.1| polyribonucleotide nucleotidyltransferase [Idiomarina sp. A28L]
gi|336283168|gb|EGN76375.1| polyribonucleotide nucleotidyltransferase [Idiomarina sp. A28L]
Length = 702
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/689 (54%), Positives = 503/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N IIK F+YG + +++E G IARQAT +V+ S++DT +L TVV K+ + +FFPLTV
Sbjct: 1 MNPIIKQFQYGQHTVTLETGAIARQATGAVMASMDDTTVLVTVVGKKEARADVDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ RLIDRPIRPLFP+G+ NE+Q++ V+S+N
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSENETLTCRLIDRPIRPLFPDGFYNEVQVIATVISLN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++ PDI ++IG S AL+IS +PF GP+G A+VG ++ +Y+LNPT +L S LDL+VAG
Sbjct: 121 PEVSPDIVALIGTSAALAISGIPFNGPIGAARVGVVNNEYVLNPTPTELSTSELDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ L ED++L A+++GHE+M+ ++AINE V K +W K++
Sbjct: 181 TEAAVLMVESEANLLSEDVMLGAVMYGHEQMQSVVSAINEFAAEVNTPKWDWQAPAKNEP 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+ I ++E KI +AY+I +K R K++ L + I+ ++ I + L
Sbjct: 241 LIAAIKELAEGKIGEAYRITDKGERKAALGVALKEVIVEL-KAKGEEINDKEVGDIFHAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ESK++R +I RID R + IR I++ TG+LPR HGSS+FTRG+TQA+V ATLGT R
Sbjct: 300 ESKVVRTRITAGEPRIDGREPDMIRAINVGTGVLPRVHGSSVFTRGETQAIVAATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID +MG TD FMLHYN PP+ G+ G +GVPKRREIGHGRLAKR +L V+P+ ++
Sbjct: 360 DAQNIDEIMGPRTDRFMLHYNFPPYCVGETGMVGVPKRREIGHGRLAKRGVLAVMPSVDE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+K V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q AL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGSSTGITALQMDIKIEGITKEIMQQALAQAKAARLHILSVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S FAPR +KI+P KIRDVIGKGG+ IR LTE TGT I+I+D+G I IA+
Sbjct: 540 ISTARDDVSDFAPRFHIMKINPEKIRDVIGKGGAVIRELTESTGTTIEIDDDGTIKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ S Q A +RIE LT V++G++Y G V R+ DFGA + IL GKDGL+HISQIS KRV
Sbjct: 600 DDASAQNAVKRIEALTAEVEVGRIYEGKVARIVDFGAFVTILPGKDGLVHISQISDKRVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++L Q V VKVL ID +GR++LSM
Sbjct: 660 DVNEYLTVGQTVPVKVLEIDRQGRVRLSM 688
>gi|149909276|ref|ZP_01897932.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
gi|149807593|gb|EDM67541.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
Length = 705
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/689 (55%), Positives = 503/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+KSFKYG + +++E G IARQAT++V+ SI DT +L +VV K + +FFPLTV
Sbjct: 1 MNPIVKSFKYGQHTVTLETGVIARQATAAVMASIGDTSVLVSVVGKKQAEAGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ RLIDRPIRPLFP G+ NE+Q+V V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTCRLIDRPIRPLFPAGFKNEVQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IGVS ALSIS +PF GP+G A++G+ + +YILNP+T +L +S LDL+VAG
Sbjct: 121 PEIQPDLVALIGVSAALSISGMPFNGPIGAARIGFQNDEYILNPSTSELAESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ L E+ +L A+++GHE+M++ I AI E V K +W V +
Sbjct: 181 TENAVLMVESEAEILSEEQMLGAVMYGHEQMQVVIEAIKEFAAEVNTPKWDWTAPVVNTE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +KI ++ + +AYQI+ K R I + + L EN ++ + +L L
Sbjct: 241 LKAKIAELASGDLAEAYQIQEKTERYAKVGGIKSAVIAKL-QEENAELNTREAGELLASL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E I+R +ILD RID R IR +S+ TG+LPRTHGS+LFTRG+TQALV ATLGT R
Sbjct: 300 EKNIVRNRILDGEPRIDGRDPEMIRALSVMTGVLPRTHGSALFTRGETQALVTATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q+ID+L GE D F++HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+PN ++
Sbjct: 360 DAQRIDSLTGETIDRFLMHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNADE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+ DG++ VILSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVLDGDRSVILSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG+ GITALQMDIKI GIT DI+Q AL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGSSAGITALQMDIKIEGITKDIMQKALVQAKAARLHILSVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S+FAPR+ TIKI KI+D+IGKGG+TIR LTEETGT I+I D+G + IA+
Sbjct: 540 IATNRDDVSEFAPRIHTIKISTDKIKDIIGKGGATIRALTEETGTTIEIEDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ Q A RI +LT V++G++Y G V+RL DFGA + IL GKDGL+HISQI+ +RVN
Sbjct: 600 SNEQAQAAIERIHQLTAEVEVGQIYEGKVVRLADFGAFVNILPGKDGLVHISQITQERVN 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D L Q V+VKVL +D +GRI+LS+
Sbjct: 660 KVADHLSVEQVVKVKVLEVDRQGRIRLSI 688
>gi|153207996|ref|ZP_01946530.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
Goat Q177']
gi|165918905|ref|ZP_02218991.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii Q321]
gi|212218334|ref|YP_002305121.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
CbuK_Q154]
gi|226702641|sp|B6J6S7.1|PNP_COXB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120576196|gb|EAX32820.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
Goat Q177']
gi|165917375|gb|EDR35979.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii Q321]
gi|212012596|gb|ACJ19976.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
CbuK_Q154]
Length = 696
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/692 (52%), Positives = 507/692 (73%), Gaps = 3/692 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
NKI K+F+YG ++++ E GE+ARQAT +V+V + DTV+L +VV+ K+ +FFPLTV
Sbjct: 1 MNKIRKTFQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG +FKREG+P+E+ET+ SRLIDRP+RPLFP+G+ NE+Q++ VLSV+
Sbjct: 61 NYQEKTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
++ DI +I+G S A+ +S +PF G LG A+VGY G+Y+LNP+ ++LK S LDL+VAG
Sbjct: 121 SKVPTDIPAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+++LPE ++L A++ GH+ M++AI AI E +Q G K W+P +
Sbjct: 181 TRDAVLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI---DNENLTIDINDINCIL 361
L ++ SE ++KAYQI+ K R + I + + + E ++ +++ I
Sbjct: 241 LEKLVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIF 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
++LE +I+R+QIL RID R +RPI+++ G+LPR+HGS+LFTRG+TQALVV TLG
Sbjct: 301 HELERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID L G+ + F+ HYN PPF G++G + PKRREIGHGRLAKRA++PV+P
Sbjct: 361 TERDAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPT 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+KF Y IR+VSEI ESNGSSSMASVCG LAL+DAGVP VAGIAMGLIK+ +K +
Sbjct: 421 LDKFPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I++ AL +AK+G +IL M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ K ++++S AP+ +T+KI+P KIRDVIGKGG IR +TE T IDI+D+G I I
Sbjct: 541 NKVLDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKI 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + G+ AKRRIE+LT V++GKVY G V+++ DFGA ++IL GL+HISQI+ +
Sbjct: 601 AAHTTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQE 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+E Q +RVKV+ ID +GR++LSM
Sbjct: 661 RVENVRDYLEEGQVIRVKVIEIDRQGRVRLSM 692
>gi|386814351|ref|ZP_10101569.1| Polyribonucleotide nucleotidyltransferase [Thiothrix nivea DSM
5205]
gi|386418927|gb|EIJ32762.1| Polyribonucleotide nucleotidyltransferase [Thiothrix nivea DSM
5205]
Length = 697
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/693 (53%), Positives = 510/693 (73%), Gaps = 13/693 (1%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG+ ++IE GEIA+QA+++V+V+++DT +L TVV K+ +FFP+TVDY
Sbjct: 3 KITKTFQYGNNTVTIETGEIAKQASAAVIVNMDDTCVLVTVVGQKNAVEGRDFFPMTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YAAGRIPG FFKRE + +E ET+++RLIDRP+RPLFP+G+ NE+Q++ V+S+NP+
Sbjct: 63 QEKFYAAGRIPGGFFKRETRATEEETLVARLIDRPLRPLFPDGFTNEVQVIAMVVSMNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ DI ++IG S A+++S +PF GP+G A+VGY +G+Y+LNP+ L S LDL++AGT+
Sbjct: 123 VPADIPAMIGASAAMALSGMPFQGPIGAARVGYRNGEYLLNPSKADLATSGLDLVIAGTD 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+K+L ED++L ++IFGH++M++ INAINEL + G +W + L
Sbjct: 183 AAVLMVESEAKELSEDVMLGSVIFGHDQMQVVINAINELTKEAGTVAWDWSAPEANTALQ 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-------IDINDINC 359
+ + E + +A+QI +KQ R + I + + +++ E LT +DI
Sbjct: 243 AAVAGECEAPLTEAFQIADKQQR---YGRIDEVLVAAV---EKLTAKEGEEGFSADDIKG 296
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
++E KI+R ILD RID R ++ +RPI++R G+LPR HGS+LFTRG+TQALVV T
Sbjct: 297 EFKNVEKKIVRGSILDGKPRIDGRALDMVRPITVRLGVLPRAHGSALFTRGETQALVVTT 356
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RD Q IDA+ GE+ D+F+ +YN PP++ G++GR G PKRREIGHGRLAKR + ++
Sbjct: 357 LGTERDAQVIDAITGEYKDNFLFNYNFPPYSVGEVGRFGAPKRREIGHGRLAKRGVKAMV 416
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
PN + F Y+IR VSEITESNGSSSMASVCG LA++DAGVP+ VAGIAMGLIK+G++
Sbjct: 417 PNTDDFPYTIRCVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGDRF 476
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+LSDILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q AL +AK G +IL
Sbjct: 477 AVLSDILGDEDHLGDMDFKVAGSSEGITALQMDIKINGITKEIMQQALTQAKAGRLHILG 536
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
+M + ++E+S++APR +T+KI+P KIR+VIGKGG TIR +TE+TG IDINDEG I
Sbjct: 537 EMAKGIEAPRDEISQYAPRYVTMKINPEKIREVIGKGGETIRGITEKTGCSIDINDEGFI 596
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ ++ + EA+ IE +T V++ KVY G V R+ DFGA + IL GKDGLLHISQIS
Sbjct: 597 KIAAVDAKAAYEARAIIESITAEVELNKVYEGKVARIMDFGAFVTILPGKDGLLHISQIS 656
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
++RV +TD L VRVKV+ ID +GR++LS
Sbjct: 657 NERVENVTDHLNVGDTVRVKVIEIDRQGRLRLS 689
>gi|442611760|ref|ZP_21026463.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441746505|emb|CCQ12525.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 706
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/691 (53%), Positives = 501/691 (72%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGRHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAAPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+PS+ ET+I+RLIDRPIRPLFP+G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPSDGETLIARLIDRPIRPLFPDGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PDI ++IG S AL++S +PF GPLG A+VGY+DG+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDIVAMIGTSAALAVSGIPFNGPLGAARVGYVDGQYVLNPTLKELEESKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ L EDI+L A+++GHE+ + I A+NE G+ +W KD +
Sbjct: 181 TENAVLMVESEANVLSEDIMLGAVVYGHEQAQSIITAVNEFKAMAGKPNWSWSAPEKDVS 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
K+ +I K+ +AY+I +K R + + ++L + E ++D+ +++
Sbjct: 241 FAEKVESIVGEKVGEAYRITDKVARKDALSAAKELLVATLEADLAEGESLDLQEVSKQFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I+ RID R + +R + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRSRIIAGEKRIDGRDTDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L+G FM+HYN PPF+ G++G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQLIDDLVGTQKHHFMMHYNFPPFSVGEVGFVGSPKRREIGHGNLAKRGVQAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+GE V+L
Sbjct: 421 TEFPYSIRVVSEITESNGSSSMASVCGASLALMNAGVPIKASVAGIAMGLVKEGEDFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITKEIMQIALKQAKAARLHILGVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS+FAPR+ T+ I P KI +VIGKGG+TIR LTEETGT I+I D+G + IA
Sbjct: 541 EAIASPAQELSEFAPRIYTMNIPPKKIAEVIGKGGATIRQLTEETGTTIEIEDDGTVKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +S +EA RRIE LT +++G VY G V+R+ DFGA + +L GKDGL+HISQIS++R
Sbjct: 601 ATDGLSAKEAIRRIEALTAELEVGTVYQGKVVRIVDFGAFVNVLPGKDGLVHISQISNER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D L Q+V VKVL +D +GR++LSM
Sbjct: 661 VTNVSDHLTVGQEVTVKVLEVDRQGRVRLSM 691
>gi|350425685|ref|XP_003494200.1| PREDICTED: polyribonucleotide nucleotidyltransferase-like [Bombus
impatiens]
Length = 892
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/656 (56%), Positives = 492/656 (75%), Gaps = 1/656 (0%)
Query: 98 IEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRL 157
++DT + TVV+ K +FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RL
Sbjct: 1 MDDTAVFVTVVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARL 60
Query: 158 IDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKV 217
IDRP+RPLFPEG++NEIQI+ V+SVNP+I PDI ++IG S ALS+S +PF GP+G A+V
Sbjct: 61 IDRPLRPLFPEGFVNEIQIIATVVSVNPEISPDIVAMIGASAALSLSGVPFHGPIGAARV 120
Query: 218 GYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKI 277
G+ID ++ILNPTT +L KS LDL+VAGT A++ VESE+ L E+ +L+A++FGHE+ ++
Sbjct: 121 GFIDNQFILNPTTSELPKSRLDLVVAGTNSAVLMVESEADLLTEEQMLSAVVFGHEQQQV 180
Query: 278 AINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNIS 337
I+ INE V G + +W P K++ L I+ ++ ++ AY+I KQ R I
Sbjct: 181 VIDNINEFVAKAGNVEWDWQPPAKNEILYHTIVELAASRLGDAYRITEKQTRYAQIDQIK 240
Query: 338 KDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGI 397
+D+ ++L N N ID N++ I+ DLES+I+R++++ RID R + IR + IRTG+
Sbjct: 241 EDVLTTLKAN-NEEIDENEVLKIIVDLESQIVRQRVIRGEPRIDGREKDMIRALDIRTGV 299
Query: 398 LPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRI 457
LPRTHGSSLFTRG+TQALV ATLGT RD Q ID + GE TD F+LHYN PP++ G+ G +
Sbjct: 300 LPRTHGSSLFTRGETQALVTATLGTERDAQIIDDITGEHTDRFLLHYNFPPYSVGETGMV 359
Query: 458 GVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDA 517
G PKRREIGHGRLAKR + V+P+ N+F Y++R+VSEITESNGSSSMASVCG LAL+DA
Sbjct: 360 GSPKRREIGHGRLAKRGVAAVMPSVNEFPYTVRVVSEITESNGSSSMASVCGASLALMDA 419
Query: 518 GVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFG 577
GVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAGT G++ALQMDIKI G
Sbjct: 420 GVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHLGDMDFKVAGTSTGVSALQMDIKIEG 479
Query: 578 ITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGG 637
IT +I+QIAL +AK +IL M+ + + E+S+FAPR+ TI I+P KIRDVIGKGG
Sbjct: 480 ITKEIMQIALNQAKSARLHILNVMEQAINTPRKEISEFAPRIYTININPDKIRDVIGKGG 539
Query: 638 STIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLF 697
+TIR LTEETGT I+I D+G + IA+ + Q A RI +T V++GK+YTG V+R+
Sbjct: 540 ATIRALTEETGTTIEIEDDGTVKIAAADGKKAQMAIDRINDITADVEVGKIYTGKVVRIV 599
Query: 698 DFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
DFGA + I GK+GL+H+SQI+ RV +TD+L+ Q+V+VKVL ID +GRI+LSM
Sbjct: 600 DFGAFVAIGGGKEGLVHVSQIADHRVEKVTDYLQVGQEVQVKVLEIDRQGRIRLSM 655
>gi|90412489|ref|ZP_01220492.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
profundum 3TCK]
gi|90326526|gb|EAS42932.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
profundum 3TCK]
Length = 707
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/689 (52%), Positives = 511/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ +++E G +ARQAT++V+ S++DT + +VV K +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P ++PD+ ++I S AL+IS LPF GP+G A+VG+++ +++LNP+ +L++S LDL+V+G
Sbjct: 121 PDVNPDMITMIATSAALAISGLPFNGPIGAARVGFVNDQFVLNPSNTELEESRLDLVVSG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ +L E+ +L A+++GH++ ++ INAINE V +W V +
Sbjct: 181 TKDAVLMVESEADRLSEETMLQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVVNAE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +++ + +E ++ AYQI K R +I D+ +SL+ E+ T+D ++ +L L
Sbjct: 241 LKARVADKAETRLSDAYQITEKMARYDEVGSIKNDVVTSLL-AEDETLDERELRGMLSSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID++MGE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+ +
Sbjct: 360 DAQIIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA+
Sbjct: 540 IGSHRDDISQFAPRIHTMKISSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +EA RRIE++T V++G++YTG V+R+ DFGA + ++ K+GL+HISQI+ +RV
Sbjct: 600 EGAAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ Q+V+VKVL ID +GRI+LSM
Sbjct: 660 KVSDHLQMGQEVQVKVLEIDRQGRIRLSM 688
>gi|335420659|ref|ZP_08551696.1| polynucleotide phosphorylase/polyadenylase [Salinisphaera
shabanensis E1L3A]
gi|334894395|gb|EGM32591.1| polynucleotide phosphorylase/polyadenylase [Salinisphaera
shabanensis E1L3A]
Length = 710
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/686 (53%), Positives = 506/686 (73%), Gaps = 2/686 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
++F++G + +++E GEIARQA +V VS+ DTV+L T V K+ FFPLTV+Y E+
Sbjct: 10 QTFQFGEHAVTLETGEIARQADGAVKVSMGDTVVLVTAVGKKEAAPNAAFFPLTVNYQER 69
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YA G+IPG FFKREG+P E+ET+ RLIDRPIRPLFP+G+ NE+QIV V+SV+P+ID
Sbjct: 70 TYAGGKIPGGFFKREGRPGEKETLTCRLIDRPIRPLFPKGFYNEVQIVATVMSVDPEIDA 129
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
DI ++IG S ALS++ LPF GP+G A+VGY +G+Y+LNP+ QLK S L+L+VAGT A+
Sbjct: 130 DIPAMIGASAALSVAGLPFAGPIGGARVGYANGEYVLNPSATQLKTSDLNLVVAGTSDAV 189
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
+ VESE+K+L E+I+L A++FGHE+++ AI AI +V VG+ K +W KD++L +
Sbjct: 190 LMVESEAKELSEEIMLGAVLFGHEQIQAAIQAIEAMVAEVGKPKWDWQAPAKDESLAEAV 249
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLT-IDINDINCILYDLESKI 368
++++ + +AYQI +KQ R I + + + L E +D+ L LE
Sbjct: 250 ERVAKNDVVEAYQIADKQERGARLGEIKEAVVAELAAAEGEEGWSRDDVKGALGALEKTT 309
Query: 369 IRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQK 428
+R +IL+ RID R +R + I+TG+LPRTHGS+LFTRG+TQALVV TLGT RD Q
Sbjct: 310 VRSRILEGQPRIDGRDTRTVRALDIKTGVLPRTHGSALFTRGETQALVVTTLGTGRDAQM 369
Query: 429 IDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK-FNY 487
IDA+ G++ D FMLHYN PP++ G+ G +G PKRREIGHG+LAKRA++ VLP+ K F Y
Sbjct: 370 IDAVEGKYDDPFMLHYNFPPYSVGETGFMGSPKRREIGHGKLAKRAIMGVLPDLEKEFPY 429
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSE+TESNGSSSMASVCG LAL+DAGVP+ VAG+AMGLIK+G+K +L+DILG
Sbjct: 430 VMRVVSEVTESNGSSSMASVCGTSLALMDAGVPVKAPVAGVAMGLIKEGDKFAVLTDILG 489
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAG+ +GITALQMDIKI GIT +I++ AL +AK+G +ILE M + K
Sbjct: 490 DEDHLGDMDFKVAGSNDGITALQMDIKIAGITREIMEAALEQAKEGRLHILEVMGQAIDK 549
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S++APR+ TIKID KIRDVIGKGG+TIR++TEETG IDI D+G I +A+ +
Sbjct: 550 PRQEVSEWAPRIFTIKIDSDKIRDVIGKGGATIRSITEETGASIDIEDDGTIHVAAVDKS 609
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ A +RIE +T ++ G+VY G V+R+ DFGA + ++ G+DGL+HISQI+ RV ++
Sbjct: 610 AADMAIKRIEDITRDIEAGQVYEGKVVRIVDFGAFVNLVPGRDGLVHISQIADHRVEKVS 669
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E Q V+VKVL +D +GR++LSM
Sbjct: 670 DELSEGQTVKVKVLEVDRQGRVRLSM 695
>gi|282600044|ref|ZP_05972801.2| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
DSM 4541]
gi|282566848|gb|EFB72383.1| polyribonucleotide nucleotidyltransferase [Providencia rustigianii
DSM 4541]
Length = 685
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/668 (55%), Positives = 509/668 (76%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
IARQAT++V+V+++DT + T V+ K +FFPLTV+Y E+ YAAGRIPGSFF+REG
Sbjct: 2 IARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+P E ET+++RLIDRP+RPLFPEG+LNEIQI+ V+SVNPQ++PDI ++IG S AL++S
Sbjct: 62 RPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQVNPDIVAMIGASAALALSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VAGT+ A++ VESE++ L E+ +L
Sbjct: 122 VPFNGPIGAARVGYINDQYVLNPTADELKSSRLDLVVAGTDSAVLMVESEAELLSEEQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGH++ ++ I IN+LV+ G++K +W P ++ L +I ++E ++ AY+I
Sbjct: 182 GAVVFGHDQQQVVIQNINDLVKEAGKEKWDWQPEPVNQALKDRIAALAESRMGDAYRITE 241
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I +++ ++L+ E+ +D+++++ IL LE +++R +++ RID R
Sbjct: 242 KQERYAQVNLIKEEVTAALL-AEDENVDLSEVSDILAHLEKQVVRSRVIRGEPRIDGREK 300
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT RD Q ID LMGE+TD F+ HYN
Sbjct: 301 DMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGEYTDRFLFHYN 360
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP++ G+ G +G PKRREIGHGRLAKR +L V+P++ F Y+IR+VSEITESNGSSSMA
Sbjct: 361 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSHADFPYTIRVVSEITESNGSSSMA 420
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+G V+LSDILGDED GDMDFKVAG+ G
Sbjct: 421 SVCGASLALMDAGVPIKAAVAGIAMGLVKEGNDFVVLSDILGDEDHLGDMDFKVAGSREG 480
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
I+ALQMDIKI GIT +I+Q+AL +AK +IL M+ + + E+S+FAPR+ TI+I
Sbjct: 481 ISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINGPREEISEFAPRIYTIRIS 540
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + +EA RRIE +T V++
Sbjct: 541 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGLKAKEAIRRIEDITAEVEV 600
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL ID
Sbjct: 601 GRIYPGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEIDR 660
Query: 746 RGRIKLSM 753
+GRI+LSM
Sbjct: 661 QGRIRLSM 668
>gi|345864596|ref|ZP_08816795.1| polyribonucleotide nucleotidyltransferase [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124293|gb|EGW54174.1| polyribonucleotide nucleotidyltransferase [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 699
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/693 (54%), Positives = 503/693 (72%), Gaps = 5/693 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I K F++G +K+S+E GEIARQA +VLV+++DTV+LATVV P +FFPLTV
Sbjct: 1 MTAIKKEFQWGEHKVSLETGEIARQADGAVLVNMDDTVVLATVVGAG-PIPGRDFFPLTV 59
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY EK YAAG+IPG FF+REG+PSE+E + SRLIDRPIRPLFP+GY +E+Q+++ V S+N
Sbjct: 60 DYQEKTYAAGKIPGGFFRREGRPSEKEILTSRLIDRPIRPLFPKGYNSEVQVILTVKSLN 119
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK-SHLDLLVA 243
P +DP+I ++IG S AL+IS LPF GP+G +VGY DG+YILN + L S LDL+VA
Sbjct: 120 PAVDPEIPALIGASAALAISGLPFNGPVGACRVGYKDGEYILNAASTGLSADSDLDLIVA 179
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE+ +L E+++L A++FGHE+ +I I+ IN L VG+ ++ D+
Sbjct: 180 GTEEAVLMVESEANELSEEVMLGAVLFGHEQSQIVIDTINALAAEVGKAAGEFESPTVDE 239
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLT---FKNISKDIYSSLIDNENLTIDINDINCI 360
L + + +E + AY I +K R K + + S + E +++
Sbjct: 240 ALTAAVAEAAEVGMGDAYSIADKLERYAAADAVKEATLEKLCSAAEGEEPRWSTDEVKGA 299
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L L+ +I+R +ILD RID R +RPIS+RTG+LPRTHGS+LFTRG+TQALVV TL
Sbjct: 300 LEKLKKRIVRGRILDGEPRIDGRDTRTVRPISVRTGVLPRTHGSALFTRGETQALVVTTL 359
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT RD Q IDAL GE +SFMLHYN PPF G+ GR+G PKRREIGHGRLAKR +L +P
Sbjct: 360 GTERDSQIIDALEGERRESFMLHYNFPPFCVGETGRVGSPKRREIGHGRLAKRGVLACMP 419
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+F Y+IR+VSEITESNGSSSMASVCG L+L+DAGVP+ VAG+AMGLIK+ E+
Sbjct: 420 TLAEFPYAIRVVSEITESNGSSSMASVCGTSLSLMDAGVPLKAPVAGVAMGLIKEDERFA 479
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+L+DI+GDED GDMDFKVAGT GI ALQMDIKI GIT +I++IAL +AK+G +IL++
Sbjct: 480 VLTDIMGDEDHLGDMDFKVAGTAQGINALQMDIKINGITKEIMEIALEQAKEGRLHILDE 539
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + E+S+ APR+I IKI+P KIRDVIGKGG TIR +TE TG +DI D+GI+
Sbjct: 540 MNRVISSHRGEMSEHAPRIIEIKINPDKIRDVIGKGGVTIRGITEATGATVDITDDGIVK 599
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I S + +G+EAK+R+E +T V++G VY G V RL DFGA + IL GKDGL+HISQIS+
Sbjct: 600 IFSVDKAAGEEAKKRVELITADVEVGTVYEGKVARLMDFGAFVTILPGKDGLVHISQISN 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV ++D L E +RVKVL +D +GRI+LSM
Sbjct: 660 ERVEKVSDKLSEGDNIRVKVLEVDKQGRIRLSM 692
>gi|424802140|ref|ZP_18227682.1| Polyribonucleotide nucleotidyltransferase [Cronobacter sakazakii
696]
gi|423237861|emb|CCK09552.1| Polyribonucleotide nucleotidyltransferase [Cronobacter sakazakii
696]
Length = 690
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/657 (54%), Positives = 493/657 (75%), Gaps = 2/657 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLT++Y E+ YAAGRIPG FF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+I+RLIDRP+RPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPT ++LK S LDL+VAGTE A++ VESE++ L ED +L
Sbjct: 122 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ ++ I IN+LV+ G+ + +W P ++ L +++ ++E ++ AY+I +
Sbjct: 182 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEALNARVKALAESRLSDAYRITD 241
Query: 326 KQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNR 383
KQ R I D+ ++L E +D N++ IL+ +E ++R ++L RID R
Sbjct: 242 KQERYSQIDAIKADVIAALQAEQAEGDALDENELGDILHAIEKNVVRSRVLAGEPRIDGR 301
Query: 384 GVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLH 443
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT RD Q ID LMGE TD F+ H
Sbjct: 302 EKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTDRFLFH 361
Query: 444 YNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSS 503
YN PP++ G+ G +G PKRREIGHGRLAKR +L V+P ++F Y++R+VSEITESNGSSS
Sbjct: 362 YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSSS 421
Query: 504 MASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTV 563
MASVCG LAL+DAGVPI VAGIAMGL+K+GE V+LSDILGDED GDMDFKVAG+
Sbjct: 422 MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKVAGSR 481
Query: 564 NGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIK 623
GITALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIK
Sbjct: 482 EGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIK 541
Query: 624 IDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESV 683
I P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +
Sbjct: 542 ISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 601
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKV 740
++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKV
Sbjct: 602 EVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 658
>gi|71891895|ref|YP_277625.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|123747829|sp|Q493T3.1|PNP_BLOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71796001|gb|AAZ40752.1| polynucleotide phosphorylase [Candidatus Blochmannia pennsylvanicus
str. BPEN]
Length = 699
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/691 (56%), Positives = 510/691 (73%), Gaps = 1/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ + II FKYG + + ++IG IARQA ++V+VS+ DT +L TVVS +FFPL
Sbjct: 1 MLDPIIHKFKYGQHTVILDIGTIARQANAAVMVSMSDTTVLVTVVSSNQVRLEQDFFPLV 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+ PG FF+REG+PSE ET+ SRLIDRPIRPLFP+G++N++Q+V V+SV
Sbjct: 61 VNYQERTYAAGKFPGGFFRREGRPSENETLTSRLIDRPIRPLFPKGFINDVQVVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI +IIGVS ALS+S++PF GP+G A+VGYI +Y+LNPTT +L S LDL+++
Sbjct: 121 NPQVNPDIVAIIGVSAALSLSDIPFFGPIGAARVGYIKNQYVLNPTTTELSNSKLDLVIS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE I+ VESES L E IL+AIIFGHE+ +I I+ IN+LV+ VG+ K +W+ +
Sbjct: 181 GTESNILMVESESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKVGKTKYSWNEKEVNI 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN-ENLTIDINDINCILY 362
+L + + + E + + Y +K+ R +I KDI +++++ ++ +D +I +L
Sbjct: 241 SLKTYLSELYESRAQDIYCFFDKKERHAQVDSIKKDIVKTVLNSYQHAAVDEKEIMYLLN 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE++ IR +IL LRID R + IR I I+TGILPRTHGS+LFTRGDTQALV TLGT
Sbjct: 301 YLEAQSIRYRILTNKLRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQALVAVTLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G D F+LHYN PP+ G+IG IG PKRREIGHGRLAKR +L V+PN
Sbjct: 361 ERDAQNIDGLTGIRVDRFLLHYNFPPYCVGEIGVIGAPKRREIGHGRLAKRGMLAVMPNA 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
N+F Y+IR+VSEITESNGSSSMAS+CG LAL+DAGVPI VAG+AMGLIK+G V+L
Sbjct: 421 NEFPYTIRVVSEITESNGSSSMASICGTSLALMDAGVPIKAAVAGVAMGLIKEGNDFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDI+ DED GDMDFKV+G+ GITALQMDIK GITYDII IAL KAK IL+ M+
Sbjct: 481 SDIVSDEDHIGDMDFKVSGSRQGITALQMDIKTDGITYDIINIALKKAKNARLQILDVME 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ E+SKFAPR+ +IK++P KI+DVIGKGGS IR+LTEET T IDI D GII I
Sbjct: 541 QIIKFPNQEISKFAPRIYSIKVNPDKIKDVIGKGGSVIRSLTEETNTIIDIEDNGIIKIV 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + ++A RRI +T +V+IG VYTG V + +FGA + ILSGK+GL+HISQIS +R
Sbjct: 601 ALDYDKAKQAIRRINDITANVEIGAVYTGKVSHIVEFGAFVTILSGKEGLVHISQISERR 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+N +TD+LK QKV VKVL ID +GRI+LSM
Sbjct: 661 INKVTDYLKLGQKVLVKVLEIDRQGRIRLSM 691
>gi|389736351|ref|ZP_10189911.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter sp. 115]
gi|388439488|gb|EIL96043.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter sp. 115]
Length = 701
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/688 (52%), Positives = 508/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K+ KSF+YG++++++E GEIARQA+ +V+ S+ TV+L T V+ +FFPLTVDY
Sbjct: 3 KVTKSFQYGNHEVTLETGEIARQASGAVMASMGGTVVLVTAVAAAKQKEGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
+EK Y+AGRIPG FFKREG+P+E+ET+ SRLIDRP+RPLFP+ + NE+Q++ V+S+NP+
Sbjct: 63 VEKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPDDFKNEVQVIAQVVSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI +++G S ALS++ +PF GP+G A+VGY +G+Y+LNP+ +LK S LDL+VAGT
Sbjct: 123 VDGDIVALLGASAALSLAGIPFKGPIGAARVGYANGQYLLNPSATELKTSELDLVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+K L ED++L A++FGH++M+ AI AI EL G+ +W +D++L+
Sbjct: 183 GAVLMVESEAKLLSEDVMLGAVMFGHQQMQTAIRAIAELATEAGKPSWDWKAPARDESLV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYDLE 365
+ + ++ A+ +++K R I D+ + L E + +LE
Sbjct: 243 AAVKGAVGDQLAAAFSVRDKLERRDAISAIKADVLAGLKAQAEEKGWATAAMAKEFEELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+R +L +RID R ++D+R I+ R G+LPRTHGS+LFTRG+TQALV+ TLGT+RD
Sbjct: 303 YHTMRDSVLKTKVRIDGRQLDDVRAITARVGVLPRTHGSALFTRGETQALVMITLGTTRD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA GE D F+ HYN PPF+ G+ GR G PKRREIGHGRLAKR + V P+ +F
Sbjct: 363 AQIIDAPGGESKDPFLFHYNFPPFSVGEAGRFGAPKRREIGHGRLAKRGVQAVKPSIEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMASVCG LA++DAGVP+ VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYVVRVVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+++AL +AK+G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGSADGISALQMDIKIDGITEEIMKVALAQAKQGRLHILGEMAKAL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + E+S+FAPRLITIKI P KIR+VIGKGG+TIR++TEETGT IDI+D+G + + S N
Sbjct: 543 TEARTEMSEFAPRLITIKIHPDKIREVIGKGGATIRSITEETGTTIDISDDGTVIVGSVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+G+ AK+RIE++ V+ G++Y G V +L DFGA + I+ GKDGL+H+SQIS++RV
Sbjct: 603 REAGEAAKKRIEQIVSDVEPGRIYEGKVAKLMDFGAFVTIMPGKDGLVHVSQISNERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE Q V+VKVL +D +GRI+LSM
Sbjct: 663 VSDKLKEGQIVKVKVLEVDKQGRIRLSM 690
>gi|424669569|ref|ZP_18106594.1| polyribonucleotide nucleotidyltransferase [Stenotrophomonas
maltophilia Ab55555]
gi|401071640|gb|EJP80151.1| polyribonucleotide nucleotidyltransferase [Stenotrophomonas
maltophilia Ab55555]
gi|456736824|gb|EMF61550.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas
maltophilia EPM1]
Length = 702
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 512/690 (74%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI ++IG S AL+++ PF+GP+G AKVGY +G+YILNPT +L S L+L+VAGT
Sbjct: 123 VDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTS 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ INAINEL G K W+ K+ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ +A+Q+++K R I KD++ +L + E + +++ +
Sbjct: 243 SALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVFETLAGRVAAEGW--NPAELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R +LD +RID R ++ +RPI+++TG+LPRTHGSSLFTRG+TQA+V TLGT+
Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PPF+ G+ GR+ PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+LS
Sbjct: 421 AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GI+ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE V+VKVL +D +GRI+LSM
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSM 690
>gi|54307819|ref|YP_128839.1| polynucleotide phosphorylase [Photobacterium profundum SS9]
gi|81400130|sp|Q6LUI8.1|PNP_PHOPR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|46912242|emb|CAG19037.1| putative polyribonucleotide nucleotidyltransferase [Photobacterium
profundum SS9]
Length = 707
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/689 (52%), Positives = 512/689 (74%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ +++E G +ARQAT++V+ S++DT + +VV K +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+++PD+ ++I S AL+IS LPF GP+G A+VG+I+ +++LNP+ +L++S LDL+V+G
Sbjct: 121 PEVNPDMITMIATSAALAISGLPFNGPIGAARVGFINDQFVLNPSNTELEESRLDLVVSG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ +L E+ +L A+++GH++ ++ INAINE V +W V +
Sbjct: 181 TKDAVLMVESEADRLSEETMLQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVVNAE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +++ + + ++ AYQI K R +I D+ +SL+ E+ T+D ++ +L L
Sbjct: 241 LKARVADKAATRLSDAYQITEKMARYDEVGSIKNDVVASLL-AEDETLDERELRGMLSSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKHVVRGRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID++MGE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+ +
Sbjct: 360 DAQIIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S+FAPR+ T+KI+ KI+DVIGKGG+ IR LTEETGT I+I D+G I IA+
Sbjct: 540 IGTHRDDISQFAPRIHTMKINSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +EA RRIE++T V++G++YTG V+R+ DFGA + ++ K+GL+HISQI+ +RV
Sbjct: 600 EGAAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ Q+V+VKVL ID +GRI+LSM
Sbjct: 660 KVSDHLQMGQEVQVKVLEIDRQGRIRLSM 688
>gi|389794728|ref|ZP_10197874.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter fulvus
Jip2]
gi|388431942|gb|EIL88982.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter fulvus
Jip2]
Length = 701
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/688 (53%), Positives = 505/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K+ KSF+YG++++++E GEIARQA+ +V+VS+ TV+L T V+ +FFPLTVDY
Sbjct: 3 KVTKSFQYGNHEVTLETGEIARQASGAVMVSMGGTVVLVTAVAATKQKEGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
+EK Y+AGRIPG FFKREG+P+E+ET+ SRLIDRP+RPLFP+ + NE+Q++ V+S+NP+
Sbjct: 63 VEKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPDDFKNEVQVIAQVVSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI +++G S ALS++ +PF GP+G A+VGY +G+Y+LNPT +LK S LDL+VAGT
Sbjct: 123 VDGDIVALLGASAALSLAGIPFKGPIGAARVGYANGQYLLNPTATELKTSDLDLVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+K L ED++L A++FGH++M+ AI AI EL + +W +D++L+
Sbjct: 183 GAVLMVESEAKLLSEDVMLGAVMFGHKQMQTAIRAIAELAAEAAKPSWDWKAPARDESLV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYDLE 365
+ + ++ A+Q+++K R I D+ + L E + +LE
Sbjct: 243 AAVKGAVGDQLAAAFQVRDKLERRDAISAIKSDVLAGLKAQAEEKGWASAAVAKEFEELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+R +L +RID R ++D+R IS R G+LPRTHGS+LFTRG+TQALVV TLGT+RD
Sbjct: 303 YHTMRDSVLKTKVRIDGRQLDDVRAISARIGVLPRTHGSALFTRGETQALVVITLGTTRD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA GE D F+ HYN PPF+ G+ GR G PKRREIGHGRLAKR + V P +F
Sbjct: 363 AQIIDAPGGESKDPFLFHYNFPPFSVGEAGRFGAPKRREIGHGRLAKRGVQAVKPTIEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMASVCG LA++DAGVP+ VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYVVRVVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLVKEGNDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+++AL +AK+G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGSADGISALQMDIKIDGITEEIMKVALAQAKQGRLHILGEMAKCL 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ E+S+FAPRL+TIKI P KIR+VIGKGG+TIR++TEETGT IDI+D+G I I S N
Sbjct: 543 STARTEMSEFAPRLLTIKIHPDKIREVIGKGGATIRSITEETGTTIDISDDGTIIIGSVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ + AK+RIE++T V+ G++Y G V +L DFGA + I+ GKDGL+H+SQIS +RV
Sbjct: 603 REAAEAAKKRIEQITSDVEPGRIYEGKVAKLMDFGAFVTIMPGKDGLVHVSQISDERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE V+VKVL +D +GRI+LSM
Sbjct: 663 VSDKLKEGDIVKVKVLEVDKQGRIRLSM 690
>gi|212212692|ref|YP_002303628.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
CbuG_Q212]
gi|226702642|sp|B6J0K5.1|PNP_COXB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|212011102|gb|ACJ18483.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
CbuG_Q212]
Length = 696
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/692 (52%), Positives = 507/692 (73%), Gaps = 3/692 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
NKI K+F+YG ++++ E GE+ARQAT +V+V + DTV+L +VV+ K+ +FFPLT+
Sbjct: 1 MNKIRKTFQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTI 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG +FKREG+P+E+ET+ SRLIDRP+RPLFP+G+ NE+Q++ VLSV+
Sbjct: 61 NYQEKTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
++ DI +I+G S A+ +S +PF G LG A+VGY G+Y+LNP+ ++LK S LDL+VAG
Sbjct: 121 SKVPTDIPAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+++LPE ++L A++ GH+ M++AI AI E +Q G K W+P +
Sbjct: 181 TRDAVLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI---DNENLTIDINDINCIL 361
L ++ SE ++KAYQI+ K R + I + + + E ++ +++ I
Sbjct: 241 LEKWVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIF 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
++LE +I+R+QIL RID R +RPI+++ G+LPR+HGS+LFTRG+TQALVV TLG
Sbjct: 301 HELERRIVREQILTGQPRIDGRDSKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q ID L G+ + F+ HYN PPF G++G + PKRREIGHGRLAKRA++PV+P
Sbjct: 361 TERDAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPT 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+KF Y IR+VSEI ESNGSSSMASVCG LAL+DAGVP VAGIAMGLIK+ +K +
Sbjct: 421 LDKFPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I++ AL +AK+G +IL M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ K ++++S AP+ +T+KI+P KIRDVIGKGG IR +TE T IDI+D+G I I
Sbjct: 541 NKVLDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKI 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + G+ AKRRIE+LT V++GKVY G V+++ DFGA ++IL GL+HISQI+ +
Sbjct: 601 AAHTTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQE 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D+L+E Q +RVKV+ ID +GR++LSM
Sbjct: 661 RVENVRDYLEEGQVIRVKVIEIDRQGRVRLSM 692
>gi|270265063|ref|ZP_06193326.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
4Rx13]
gi|270040997|gb|EFA14098.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera
4Rx13]
Length = 686
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/668 (54%), Positives = 498/668 (74%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K +FFPLTV+Y E+ YAAGRIPGSFF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREG 61
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SVNPQ++PDI ++IG S ALS+S
Sbjct: 62 RPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGYI+ +Y+LNPTT++LK+S LDL+VAGT A++ VESE+ L ED +L
Sbjct: 122 IPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGTAGAVLMVESEADVLSEDQML 181
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A++FGHE+ +I I IN LV G+ K +W ++ L +++ ++E ++ AY I
Sbjct: 182 GAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINEALHARVAELAESRLGDAYHITE 241
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
KQ R I + +L+ + ++D ++I IL +E ++R ++L RID R
Sbjct: 242 KQERYAQVDAIKSSVVEALLAQDE-SLDASEIQDILGSVEKNVVRSRVLRGEPRIDGREK 300
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
+ IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+RD Q +D LMGE TDSF+ HYN
Sbjct: 301 DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTDSFLFHYN 360
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP++ G+ G +G PKRREIGHGRLAKR +L ++P F Y++R+VSEITESNGSSSMA
Sbjct: 361 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITESNGSSSMA 420
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+ + V+LSDILGDED GDMDFKVAG+ +G
Sbjct: 421 SVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSDILGDEDHLGDMDFKVAGSRDG 480
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
ITALQMDIKI GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TI+I+
Sbjct: 481 ITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISQFAPRIHTIRIN 540
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +++
Sbjct: 541 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKFAIRRIEEITAEIEV 600
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D
Sbjct: 601 GRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 660
Query: 746 RGRIKLSM 753
+GR++LS+
Sbjct: 661 QGRVRLSI 668
>gi|352081370|ref|ZP_08952248.1| polyribonucleotide nucleotidyltransferase [Rhodanobacter sp.
2APBS1]
gi|389798953|ref|ZP_10201961.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter sp.
116-2]
gi|351683411|gb|EHA66495.1| polyribonucleotide nucleotidyltransferase [Rhodanobacter sp.
2APBS1]
gi|388444308|gb|EIM00428.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter sp.
116-2]
Length = 701
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/688 (53%), Positives = 505/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K+ KSF+YG++++++E GEIARQA+ +V+VS+ TV+L T V+ +FFPLTVDY
Sbjct: 3 KVTKSFQYGNHEVTLETGEIARQASGAVMVSMGGTVVLVTAVAAAKQKEGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
+EK Y+AGRIPG FFKREG+P+E+ET+ SRLIDRP+RPLFPE + NE+Q++ V+S+NP+
Sbjct: 63 VEKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPEDFKNEVQVIAQVVSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI +++G S ALS++ +PF GP+G A+VGY DGKY+LNP+ +LK S LDL+VAGT
Sbjct: 123 VDGDIPALLGASAALSLAGIPFKGPIGAARVGYADGKYLLNPSATELKTSQLDLVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L ED++L A++FGH++M+ AI AI EL G+ +W ++++L+
Sbjct: 183 GAVLMVESEAQLLSEDVMLGAVMFGHQQMQTAIRAIAELATEAGKPSWDWQAPARNESLV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYDLE 365
+ + ++ A+Q+++K R I D+ + L E + +LE
Sbjct: 243 AAVKGAVGDQLAAAFQVRDKLERRDAISAIKADVLAGLKAQAEENGWSAAAMAKEFEELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+R +L +RID R ++D+R I+ R G+LPRTHGS+LFTRG+TQALVV TLGT+RD
Sbjct: 303 YHTLRDSVLKTKVRIDGRQLDDVRAITARVGVLPRTHGSALFTRGETQALVVVTLGTTRD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA GE D F+ HYN PPF+ G+ GR G PKRREIGHGRLAKR + V P+ F
Sbjct: 363 AQIIDAPGGESKDPFLFHYNFPPFSVGEAGRFGAPKRREIGHGRLAKRGVQAVKPSIEAF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMASVCG LA++DAGVP+ VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYVLRVVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLVKEGGDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+++AL +AK+G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGSAEGISALQMDIKIDGITEEIMKVALAQAKRGRLHILGEMNKAI 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ E+S++APRLITIKI P KIR+VIGKGG+TIR++TEETGT IDI+D+G I I S N
Sbjct: 543 STARAEMSEYAPRLITIKIHPDKIREVIGKGGATIRSITEETGTTIDISDDGTIIIGSVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+G+ A++RIE++ V+ G++Y G V +L DFGA + I+ GKDGL+H+SQIS +RV
Sbjct: 603 RDAGETARKRIEQIVSDVEPGRIYEGKVAKLMDFGAFVTIMPGKDGLVHVSQISDERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE V+VKVL +D +GRI+LSM
Sbjct: 663 VSDKLKEGDIVKVKVLEVDKQGRIRLSM 690
>gi|21672636|ref|NP_660703.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gi|25090941|sp|Q8K9H5.1|PNP_BUCAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21623270|gb|AAM67914.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 707
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/693 (55%), Positives = 512/693 (73%), Gaps = 7/693 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + I++E G +ARQAT++V+ S++DT + TVV K S+ FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTITLETGIMARQATAAVMASMDDTAVFVTVVGEKTTNSSQKFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YA GRIPG FF+REG+PSE E + +RLIDRPIRPLFP+G+ NEIQI+ V+SV
Sbjct: 61 VNYQERTYAVGRIPGGFFRREGRPSENEILTARLIDRPIRPLFPKGFCNEIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI SIIG S ALS+S +PF GP+G A+VG+++ +Y+LNPT + +K S LDL+V+
Sbjct: 121 NPQINPDIISIIGASAALSLSGIPFYGPIGAARVGFVNNQYVLNPTIDDMKSSFLDLVVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW---DPIV 300
GT+ A++ VE+ESK L ED IL AI+FGH++ ++ IN I L K+ W P +
Sbjct: 181 GTQNAVLMVEAESKVLSEDKILGAIMFGHQQQQVVINNIRSLSNEAS--KLPWIISYPEI 238
Query: 301 KDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCI 360
+ L KI ++E I AY I NKQ R + ++I L +EN IDI++I I
Sbjct: 239 -NTELELKITKLAEKDISNAYLIFNKQERYEKLNFLKEEIIK-LFFSENSNIDISEIEDI 296
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
+E I+RK+IL+ RID R + IR + IRTG+LPRTHGSSLFTRG+TQ+LV TL
Sbjct: 297 FEKIEKNIVRKRILNNENRIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTL 356
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GTSRD Q +D L+G+ TD+F+ HYN PP++ G+IG +G PKRREIGHGRLAKR+LL V+P
Sbjct: 357 GTSRDAQNLDELLGDKTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSLLAVMP 416
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGI+MGL+K+G+K V
Sbjct: 417 KLDDFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGDKYV 476
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKV+GT GITALQMDIKI GIT +I++IAL KAK +IL
Sbjct: 477 LLSDILGDEDHLGDMDFKVSGTEEGITALQMDIKIEGITNEIMRIALNKAKSARLHILNV 536
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
MK + K +NE+S+FAPR+ IKI+P KI+DVIGKGGS IR LTEETGT I+I D+G I
Sbjct: 537 MKQALSKPRNEISEFAPRIHKIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTIK 596
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I++ + A RRIE++T +++G++Y+G V R+ DFGA I I GK+GL+HISQIS+
Sbjct: 597 ISATIGEKAKNAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFISIGIGKEGLVHISQISN 656
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
KRV ++D L +Q + VKVL ID +GR++LS+
Sbjct: 657 KRVEKVSDHLTVDQIISVKVLEIDRQGRLRLSI 689
>gi|254521573|ref|ZP_05133628.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
SKA14]
gi|219719164|gb|EED37689.1| 3' exoribonuclease family, domain 2, protein [Stenotrophomonas sp.
SKA14]
Length = 702
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 512/690 (74%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI ++IG S AL+++ PF+GP+G AKVGY +G+YILNPT +L S L+L+VAGT
Sbjct: 123 VDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTS 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ INAINEL G K W+ K+ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ +A+Q+++K R I KD+ +L + E + +++ +
Sbjct: 243 SALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVVETLAGRVAAEGW--NPAELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R +LD +RID R ++ +RPI+++TG+LPRTHGSSLFTRG+TQA+V TLGT+
Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PPF+ G+ GR+ PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+LS
Sbjct: 421 AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GI+ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ ++ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 GLTAPRSELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE V+VKVL +D +GRI+LSM
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSM 690
>gi|389807673|ref|ZP_10204210.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter
thiooxydans LCS2]
gi|388443798|gb|EIL99933.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter
thiooxydans LCS2]
Length = 701
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/688 (53%), Positives = 505/688 (73%), Gaps = 1/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K+ KSF+YG++++++E GEIARQA+ +V+VS+ TV+L T V+ +FFPLTVDY
Sbjct: 3 KVTKSFQYGNHEVTLETGEIARQASGAVMVSMGGTVVLVTAVAAAKQKEGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
+EK Y+AGRIPG FFKREG+P+E+ET+ SRLIDRP+RPLFP+ + NE+Q++ V+S+NP+
Sbjct: 63 VEKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPDDFKNEVQVIAQVVSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
ID DI ++IG S ALS++ +PF GP+G A+VGY GKY+LNP+ +LK S LDL+VAGT
Sbjct: 123 IDGDIPALIGASAALSLAGIPFKGPIGAARVGYAGGKYLLNPSATELKTSQLDLVVAGTA 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L ED++L A++FGH++M+ AI AI EL G+ +W ++++L+
Sbjct: 183 GAVLMVESEAQLLSEDVMLGAVMFGHQQMQTAIRAIAELATEAGKPSWDWRAPARNESLV 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYDLE 365
+ + +++ A+Q+++K R I D+ + L E + +LE
Sbjct: 243 AAVKGAVGNQLAAAFQVRDKLERRDAISAIKADVLAGLKAQAEENGWSTTAMAKEFEELE 302
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+R +L +RID R ++D+R I+ R G+LPRTHGS+LFTRG+TQALVV TLGT+RD
Sbjct: 303 YHTMRDSVLKTKVRIDGRQLDDVRAITARVGVLPRTHGSALFTRGETQALVVITLGTTRD 362
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q IDA GE D F+ HYN PPF+ G+ GR G PKRREIGHGRLAKR + V P +F
Sbjct: 363 AQIIDAPGGESKDPFLFHYNFPPFSVGEAGRFGAPKRREIGHGRLAKRGVQAVKPGIEEF 422
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMASVCG LA++DAGVP+ VAGIAMGL+K+G V+LSDI
Sbjct: 423 PYVVRVVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLVKEGSDFVVLSDI 482
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAG+ GI+ALQMDIKI GIT +I+++AL +AK+G +IL +M +
Sbjct: 483 LGDEDHLGDMDFKVAGSAEGISALQMDIKIDGITEEIMKVALAQAKRGRLHILGEMAKAI 542
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ E+S++APRLITIKI P KIR+VIGKGG+TIR++TEETGT IDI+D+G I I S N
Sbjct: 543 STARAEMSEYAPRLITIKIHPDKIREVIGKGGATIRSITEETGTTIDISDDGTIVIGSVN 602
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+G+ A++RIE++ V+ G++Y G V +L DFGA + I+ GKDGL+H+SQIS +RV
Sbjct: 603 REAGETARKRIEQIVSDVEPGRIYEGRVAKLMDFGAFVTIMPGKDGLVHVSQISDERVEK 662
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE V+VKVL +D +GRI+LSM
Sbjct: 663 VSDKLKEGDIVKVKVLEVDKQGRIRLSM 690
>gi|190575258|ref|YP_001973103.1| polynucleotide phosphorylase/polyadenylase [Stenotrophomonas
maltophilia K279a]
gi|226702693|sp|B2FN86.1|PNP_STRMK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|190013180|emb|CAQ46813.1| putative polyribonucleotide phosphorylase [Stenotrophomonas
maltophilia K279a]
Length = 702
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 512/690 (74%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y N++QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNDVQIIATVMSLNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI ++IG S AL+++ PF+GP+G AKVGY +G+YILNPT +L S L+L+VAGT
Sbjct: 123 VDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTS 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ INAINEL G K W+ K+ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ +A+Q+++K R I KD++ +L + E + +++ +
Sbjct: 243 SALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVFETLAGRVAAEGW--NPAELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R +LD +RID R ++ +RPI+++TG+LPRTHGSSLFTRG+TQA+V TLGT+
Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PPF+ G+ GR+ PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+LS
Sbjct: 421 AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GI+ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE V+VKVL +D +GRI+LSM
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSM 690
>gi|56460072|ref|YP_155353.1| polynucleotide phosphorylase [Idiomarina loihiensis L2TR]
gi|81363045|sp|Q5QYE1.1|PNP_IDILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56179082|gb|AAV81804.1| Polynucleotide phosphorylase [Idiomarina loihiensis L2TR]
Length = 716
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/689 (55%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K F+YG + +++E G IARQAT+SVL SI+DT +L TVV+ K+ NFFPLTV
Sbjct: 1 MNPITKQFQYGQHTVTLETGVIARQATASVLASIDDTTVLVTVVAKKEAREGQNFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+ RLIDRPIRPLFP+G++NE+Q+V V+SVN
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSENETLTCRLIDRPIRPLFPDGFMNEVQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI+PDI ++IG S ALSIS +PF GP+G A+VG ++ +Y+LNPT ++L+ S LDL+VAG
Sbjct: 121 PQINPDIVALIGTSAALSISGVPFAGPIGAARVGVVNDEYVLNPTADELENSKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE++ L ED +L A+++GHE M+ I AI E G++K +W KD++
Sbjct: 181 TDKAVLMVESEAQLLSEDQMLGAVMYGHEAMQDVIKAITEFTAEAGKEKWDWQAPAKDES 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +KI ++E I +AY+ +K R + + + L E+ +D+ + I +DL
Sbjct: 241 LQTKIRELAEQGIGEAYRTTDKAERKGKLDQVKEQMVEKLT-AEDENVDLEESGKIFHDL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES I+R +I+ RID R + +R IS+ TG+LPRTHGS+LFTRG+TQALV ATLGT R
Sbjct: 300 ESDIVRSRIIAGEKRIDGRDPDMVRAISVATGVLPRTHGSALFTRGETQALVTATLGTDR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L G T+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P++++
Sbjct: 360 DAQMIDELTGMNTNRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGIQAVMPSHDE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+K V+LSD
Sbjct: 420 FPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEGDKHVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG +GITALQMDIKI GIT DI++ AL +AK +IL+ M
Sbjct: 480 ILGDEDHLGDMDFKVAGNTDGITALQMDIKIDGITRDIMESALAQAKSARLHILKVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ELS +APR TIKID KI+DVIGKGG+ IR LTE T T I+I D+G I +A+
Sbjct: 540 IGGHREELSTYAPRFTTIKIDQDKIKDVIGKGGAVIRELTESTNTNIEIGDDGTIKVAAS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ A +I++LT +V++GK+Y G V R+ DFGA + +L GKDGL+HISQI+ +RVN
Sbjct: 600 DQADADAAIEKIKQLTANVEVGKIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVN 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++LK V VKVL ID +GR++LSM
Sbjct: 660 DVNEYLKVGDVVPVKVLEIDRQGRVRLSM 688
>gi|94676543|ref|YP_589052.1| polynucleotide phosphorylase/polyadenylase [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|123384109|sp|Q1LSL2.1|PNP_BAUCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|94219693|gb|ABF13852.1| polynucleotide phosphorylase [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 697
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/690 (54%), Positives = 501/690 (72%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+ F+YG + + +E G +ARQAT++V+V++ DT++L TVV K FFPL
Sbjct: 1 MLNPIVHRFQYGKHIVILETGIVARQATAAVMVNMADTIVLVTVVGVKQVKPGQKFFPLM 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE E +ISR+IDRP+RPLFP+G+LNE+Q++ V+S+
Sbjct: 61 VNYQERTYAAGRFPGGFFRREGRPSEGEILISRMIDRPLRPLFPDGFLNEVQVIATVVSI 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IGVS ALSIS +PF P G A+VGYI+ +Y+LNPT +L S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGVSAALSISGIPFNCPFGAARVGYINNQYVLNPTIAELVDSSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
T A++ VESE+KQL E+ +L+AIIFGHE+ ++ I IN +V VG+ K +W V D
Sbjct: 181 STANAVLMVESEAKQLSEEQMLSAIIFGHEQQQLVIQNINHMVTIVGKPKWSWQAQVIDT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L + ++E ++ +A+ I +KQ RD+ + I D+ S+L +N TI+ I+ I +
Sbjct: 241 NLQLCVTELAESRLNEAFCISDKQERDVCIETIKSDVLSAL-QQKNETIEEETISNIFAN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +I R +IL LRID R IR + +RT ILPRTHGS+LF RG+TQALV TLGT
Sbjct: 300 LEKQIARNRILGGKLRIDGRNHKMIRSLDMRTSILPRTHGSALFVRGETQALVTVTLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
R+ Q ID L+GE TD F+LHYN PP+ G+IG +G PKRREIGHGRLAKR +L V+P N
Sbjct: 360 RNAQNIDELIGERTDRFLLHYNFPPYCVGEIGLVGSPKRREIGHGRLAKRGILAVMPTAN 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAG+AMGLIK+ VILS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAAVAGVAMGLIKEDNNFVILS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DIL +ED GDMDFKVAG+ NGITALQMDIK GIT +IIQ+AL +AK +IL M+
Sbjct: 480 DILSNEDYIGDMDFKVAGSKNGITALQMDIKTKGITNNIIQLALNQAKDARMHILNMMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S FAPR+ TIKI P KI+DVIGK GS IR LTEET T IDI D+G +T+A+
Sbjct: 540 VISMSRTDISPFAPRIHTIKIHPDKIKDVIGKCGSVIRALTEETKTIIDIEDDGTVTVAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S+ Q+A RI+ +T +++G +Y G V R+ DFGA I I S K+GL+HISQI++KRV
Sbjct: 600 TDSIKAQQAICRIKDITAEIEVGSIYHGKVTRIVDFGAFIAISSNKEGLVHISQITNKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L +Q V VKVL +D +GRI+LSM
Sbjct: 660 EKVADYLSIDQIVLVKVLEVDRQGRIRLSM 689
>gi|198282699|ref|YP_002219020.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|415995484|ref|ZP_11560357.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus sp.
GGI-221]
gi|226702590|sp|B5EMD4.1|PNP_ACIF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|198247220|gb|ACH82813.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|339835599|gb|EGQ63258.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus sp.
GGI-221]
Length = 692
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/686 (54%), Positives = 495/686 (72%), Gaps = 2/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K +G ++ +E G +ARQA +VLVS DTV+L T V ++ +FFPLTV+Y
Sbjct: 4 IRKEVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EKAYAAG+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ V+SV+
Sbjct: 64 EKAYAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDN 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI +++G S AL++S +PF GP+G A+V YIDGKY+LNP+ QL S LDL+VAGT +
Sbjct: 124 DPDILALVGASAALAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQLDLVVAGTRQ 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++QL E+I+L A++FGH + + I I L + G+ + W V D+ L
Sbjct: 184 AVLMVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKPRWEWVAPVADEALGV 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
++ + +++AY + KQ R +++ + + ++ D+ + +L +E+
Sbjct: 244 QVREKATPLLQEAYALTEKQARSKRLEDVQQAMAVEFGSDDAGRGDM--VRGLLKKIETG 301
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +ILD RID R +RPI+I G+LPRTHGS+LFTRG+TQALVVATLGT DEQ
Sbjct: 302 IVRGRILDGAPRIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQ 361
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDAL GE D FMLHYN PPF+TG+ G +G PKRREIGHGRLAKRA+ VLP +++F Y
Sbjct: 362 IIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPTDSEFPY 421
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
S+R+VSE+ ESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G + +L+DILG
Sbjct: 422 SLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTDILG 481
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I+ AL +A G +IL M + +
Sbjct: 482 DEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGVLSR 541
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ELS +APR+ITI+I+P +IRDVIG GG IR LTEETG IDI D G +TIAS +
Sbjct: 542 GRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDGE 601
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+G AKRRIE LT VQ+ +Y G V ++ DFGA + IL G+DGLLHISQIS++RV+ +
Sbjct: 602 AGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISNERVSDVH 661
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D LKE Q VRVKVL +D +G+IKLSM
Sbjct: 662 DHLKEGQAVRVKVLEVDRQGKIKLSM 687
>gi|218665115|ref|YP_002424891.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|257096668|sp|B7J4D8.1|PNP_ACIF2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218517328|gb|ACK77914.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 690
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/686 (54%), Positives = 495/686 (72%), Gaps = 2/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K +G ++ +E G +ARQA +VLVS DTV+L T V ++ +FFPLTV+Y
Sbjct: 2 IRKEVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVGRREMKPGQDFFPLTVNYQ 61
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EKAYAAG+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ V+SV+
Sbjct: 62 EKAYAAGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSVDRDN 121
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI +++G S AL++S +PF GP+G A+V YIDGKY+LNP+ QL S LDL+VAGT +
Sbjct: 122 DPDILALVGASAALAVSGIPFNGPIGAARVAYIDGKYVLNPSYAQLTTSQLDLVVAGTRQ 181
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++QL E+I+L A++FGH + + I I L + G+ + W V D+ L
Sbjct: 182 AVLMVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKPRWEWVAPVADEALGV 241
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
++ + +++AY + KQ R +++ + + ++ D+ + +L +E+
Sbjct: 242 QVREKATPLLQEAYALTEKQARSKRLEDVQQAMAVEFGSDDAGRGDM--VRGLLKKIETG 299
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +ILD RID R +RPI+I G+LPRTHGS+LFTRG+TQALVVATLGT DEQ
Sbjct: 300 IVRGRILDGAPRIDGRDSKTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQ 359
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDAL GE D FMLHYN PPF+TG+ G +G PKRREIGHGRLAKRA+ VLP +++F Y
Sbjct: 360 IIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPTDSEFPY 419
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
S+R+VSE+ ESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G + +L+DILG
Sbjct: 420 SLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGARFAVLTDILG 479
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I+ AL +A G +IL M + +
Sbjct: 480 DEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALQQALAGRLHILGLMNGVLSR 539
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ELS +APR+ITI+I+P +IRDVIG GG IR LTEETG IDI D G +TIAS +
Sbjct: 540 GRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDGE 599
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+G AKRRIE LT VQ+ +Y G V ++ DFGA + IL G+DGLLHISQIS++RV+ +
Sbjct: 600 AGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISNERVSDVH 659
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D LKE Q VRVKVL +D +G+IKLSM
Sbjct: 660 DHLKEGQAVRVKVLEVDRQGKIKLSM 685
>gi|344208240|ref|YP_004793381.1| polyribonucleotide nucleotidyltransferase [Stenotrophomonas
maltophilia JV3]
gi|343779602|gb|AEM52155.1| Polyribonucleotide nucleotidyltransferase [Stenotrophomonas
maltophilia JV3]
Length = 702
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/690 (55%), Positives = 511/690 (74%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI ++IG S AL+++ PF+GP+G AKVGY +G+YILNPT +L S L+L+VAGT
Sbjct: 123 VDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTS 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ INAINEL G K W+ K+ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
S + ++ +A+Q+++K R I KD+ +L + E + +++ +
Sbjct: 243 SALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVVETLAGRVAAEGW--NPAELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R +LD +RID R ++ +RPI+++TG+LPRTHGSSLFTRG+TQA+V TLGT+
Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PPF+ G+ GR+ PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+LS
Sbjct: 421 SFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GI+ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE V+VKVL +D +GRI+LSM
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSM 690
>gi|400405479|ref|YP_006588338.1| polyribonucleotide nucleotidyltransferase [secondary endosymbiont
of Ctenarytaina eucalypti]
gi|400363842|gb|AFP84910.1| polyribonucleotide nucleotidyltransferase [secondary endosymbiont
of Ctenarytaina eucalypti]
Length = 702
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 511/690 (74%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K FFPLT
Sbjct: 1 MLNPIVRKFQYGHHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGEKQAKLGQCFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGR PG FF+REG+PSE ET+ISRLIDRPIRPLFP G+LNE+QI+ V+SV
Sbjct: 61 VNYQERIYAAGRFPGGFFRREGRPSESETLISRLIDRPIRPLFPVGFLNEMQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI +IIG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT L +SHLDL+VA
Sbjct: 121 NPQVNPDIVAIIGASAALSLSGIPFNGPIGAARVGYINNRYVLNPTQTALAESHLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ ++ VESE++ L ED +L+AI++GHE+ ++ I IN V G+ K W +
Sbjct: 181 GTQTGVLMVESEARILSEDQMLSAIVYGHEQQQVVIENINTFVTEAGKPKWQWKAKDVNL 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++I +++ + R+AY+I KQ R ++I DI +SL +E+ ++I +I IL
Sbjct: 241 DLKTQITKLAKSRFREAYRITEKQERYTAIESIKADIVASLT-HEDENVNIFEIKDILIS 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +IL RID R + IR + +RTGIL RTHGS+LFTRGDTQALV TLGT
Sbjct: 300 LEKTVVRGRILCGEPRIDGRENDMIRRLDMRTGILLRTHGSALFTRGDTQALVATTLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE TD F+LHYN PP+ G+IG +G PKRREIGHGRLAKRA+L V+P+ +
Sbjct: 360 RDAQNIDELMGERTDRFLLHYNFPPYCVGEIGIVGSPKRREIGHGRLAKRAILAVMPSAS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE+ V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGERFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDEDR GDMDFKVAG+ GITALQMDIKI GIT DII++AL +AK +IL M
Sbjct: 480 DILGDEDRMGDMDFKVAGSREGITALQMDIKISGITRDIIRVALNQAKGARMHILSLMDK 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S APR+ TIKI+P KI+D+IGKGG+ IR LTEETGT I+I D G + +A+
Sbjct: 540 TLSSPRADISALAPRIYTIKINPDKIKDIIGKGGTVIRALTEETGTTIEIEDNGTVKVAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+S + A RRIE++ E +++G++Y G V R+ DFGA + I GK+GL+HISQI+ + V
Sbjct: 600 ADSDKARYAIRRIEEIAEEIEVGRIYNGKVTRIVDFGAFVGIRGGKEGLVHISQITDQHV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L Q V+VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLALGQIVQVKVLEVDRQGRVRLSI 689
>gi|244539108|dbj|BAH83151.1| polynucleotide phosphorylase/polyadenylase [Candidatus Ishikawaella
capsulata Mpkobe]
Length = 707
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/698 (53%), Positives = 518/698 (74%), Gaps = 3/698 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
L+ ++ L N II F+YG + +++E G +ARQ+TS+V+ S++DT +L TVV+ K P
Sbjct: 3 LVKVRVLILLNPIIHKFQYGQHIVTLETGIMARQSTSAVMASMDDTAVLITVVAQKKPKD 62
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
FFPLTV+Y E+ YAAGRIPG FF+REG+P+E ET+ISRLIDR IRPLFPEG+LNEIQ
Sbjct: 63 NKGFFPLTVNYQERTYAAGRIPGGFFRREGRPNENETLISRLIDRSIRPLFPEGFLNEIQ 122
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
I+ V+S+NPQI+PD+ +IIG S ALSIS +PF GP+G A++GYI+ +YILNPTT+ K
Sbjct: 123 IIATVVSLNPQINPDLIAIIGTSAALSISGIPFHGPIGAARIGYINEEYILNPTTDDSKY 182
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
SHLDL+V GTEKA++ VES++ L E+ IL A+IFGH K K I IN LV+N G+ N
Sbjct: 183 SHLDLIVTGTEKAVLMVESQANLLTEEQILEAVIFGHNKQKKIIENINILVKNAGKPMWN 242
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W P ++TL +II ++E ++ AY+I+ KQ R K I D ++L ++NL I
Sbjct: 243 WQPSPINETLNQQIIELTEERLDHAYRIREKQARHEEIKLIKNDAIAAL-SSDNL-ISEA 300
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
+I ++ +E +I+R ++ + RID R N +R I +RTG+LPRTHGS+LFTRG+TQAL
Sbjct: 301 EITYLISSIEKQIVRNRLFNGESRIDGRDKNMVRSIDVRTGVLPRTHGSALFTRGETQAL 360
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
V ATLGT+RD Q +D +MGE ++F+ HYN PP++ G+IG IG P+RREIGHGRLAKR+L
Sbjct: 361 VSATLGTARDAQNMDGIMGEKVENFLFHYNFPPYSVGEIGMIGSPQRREIGHGRLAKRSL 420
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
LP++P ++ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K
Sbjct: 421 LPIMPQDDIFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKK 480
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
+++++LSDIL DED GDMDFKVAGT NGITALQMDIKI GIT +I+++AL +AK
Sbjct: 481 DQEIIVLSDILSDEDHLGDMDFKVAGTYNGITALQMDIKIEGITAEIMRLALNQAKCARR 540
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
IL+ M+ + + + E+S+FAPR+ I+I+ +KI+D+IG+GG IR ++EETG I+I D
Sbjct: 541 KILKVMEQAISEPRKEISEFAPRIQIIRINKNKIKDIIGRGGVVIRAMSEETGANIEIGD 600
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
GI+ + + + + + A RIE++ +++G +YTG V R+ DFGA + I K+GL+HI
Sbjct: 601 NGIVKVIASDYLKVKAAICRIEEIIAGIEVGHIYTGKVTRIVDFGAFVSI-GNKEGLVHI 659
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI++ V ++D+LK Q+V VKVL +D + RI+LS+
Sbjct: 660 SQIANNHVQTVSDYLKIGQEVMVKVLEVDRQNRIRLSI 697
>gi|408824988|ref|ZP_11209878.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas geniculata
N1]
Length = 702
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/690 (55%), Positives = 511/690 (74%), Gaps = 5/690 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K+F+YG + +++E GE+ARQA+ +V+V ++DTV+L T V+ K +FFPLTVDY
Sbjct: 3 KITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA GRIPG FFKREG+ +E+ET+ISRLIDRPIRPLFPE Y NE+QI+ V+S+NP
Sbjct: 63 QEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLNPD 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI ++IG S AL+++ PF+GP+G AKVGY +G+YILNPT +L S L+L+VAGT
Sbjct: 123 VDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAGTS 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+ L E+++L A+ FGH +M+ INAINEL G K W+ K+ LI
Sbjct: 183 NAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDALI 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL---IDNENLTIDINDINCILYD 363
+ + ++ +A+Q+++K R I KD+ +L + E + +++ +
Sbjct: 243 AALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVVETLAGRVAAEGW--NPAELSKEFGE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R +LD +RID R ++ +RPI+++TG+LPRTHGSSLFTRG+TQA+V TLGT+
Sbjct: 301 LEYRTMRDSVLDTKVRIDGRALDTVRPIAVKTGVLPRTHGSSLFTRGETQAIVTITLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDA+ GE+ ++F+ HYN PPF+ G+ GR+ PKRREIGHGRLAKR +L V+P+
Sbjct: 361 RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ V+LS
Sbjct: 421 AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GI+ALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS +APRL+TIKI P KIR+VIGKGGSTI+ +T+ETGTQIDI D+G I IAS
Sbjct: 541 GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+++ Q AK RIE++T V+ G++Y G V ++ DFGA + IL GKDGL+H+SQISS RV
Sbjct: 601 VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE V+VKVL +D +GRI+LSM
Sbjct: 661 EKVGDVLKEGDVVKVKVLEVDKQGRIRLSM 690
>gi|381160007|ref|ZP_09869239.1| polyribonucleotide nucleotidyltransferase [Thiorhodovibrio sp. 970]
gi|380878071|gb|EIC20163.1| polyribonucleotide nucleotidyltransferase [Thiorhodovibrio sp. 970]
Length = 702
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/690 (54%), Positives = 490/690 (71%), Gaps = 2/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I K+F+YG +++E GEIARQA +V+V++ DTV+L TVV K T +F PLTV
Sbjct: 1 MTHITKTFQYGDQTVTLETGEIARQADGAVMVNMNDTVVLVTVVIDKRATVEKDFLPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
DY EK YAAGRIPG FF+REG+PSE E + SRLIDRPIRPLF +G+ E+Q++ V S+N
Sbjct: 61 DYQEKTYAAGRIPGGFFRREGRPSEAEILTSRLIDRPIRPLFADGFGREVQVIATVKSLN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK-SHLDLLVA 243
P ++P++ ++IG S AL+IS PF GP+G A+VGY +G+Y+LNP L S LDL+VA
Sbjct: 121 PAVNPEVPALIGASAALAISGAPFNGPIGAARVGYKNGEYLLNPAMIGLTPDSDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE+A++ VESE++ L ED++L A++FGHE+M++ IN I EL V + + W P D
Sbjct: 181 GTEQAVLMVESEARGLSEDVMLGAVLFGHEQMQVVINTIKELAAEVNKPPLEWTPAATDA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L + + + +AY IK+K R + +Y+ L E+ + L
Sbjct: 241 ELAQAVAAQAADGLGEAYLIKDKMERYRALDRVRNAVYAEL-SGEDEKWPQALVYAALEK 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE I+R +IL RID R + +RPISIRTG+LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 300 LEKSIVRGRILRGEPRIDGRDTSTVRPISIRTGVLPRTHGSALFTRGETQALVVTTLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL GE + FMLHYN PPF G+ GR+G PKRREIGHGRLAKR ++ +P+
Sbjct: 360 RDSQIIDALDGERREPFMLHYNFPPFCVGETGRVGSPKRREIGHGRLAKRGVMAAMPSIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F YS+R+VSEITESNGSSSMASVCG L+L+DAGVPI VAG+AMGLIK+G + +L+
Sbjct: 420 EFPYSVRVVSEITESNGSSSMASVCGTSLSLMDAGVPIKGSVAGVAMGLIKEGGEFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DI+GDED GDMDFKVAGT GI ALQMDIKI GIT +I+Q AL +AK G +IL +M
Sbjct: 480 DIMGDEDHLGDMDFKVAGTAEGINALQMDIKIEGITREIMQQALAQAKDGRMHILGEMNK 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ ++E+S+ APR+I KI P KIRDVIGKGGSTIR +TEETG IDIND+G++ I S
Sbjct: 540 VIDHHRSEMSEHAPRIIEFKIHPEKIRDVIGKGGSTIRAITEETGATIDINDDGVVKIFS 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+G+EAK+R+ +T V++GK+Y G V RL DFGA + IL G+DGL+HISQI +RV
Sbjct: 600 VQKSAGEEAKKRVRLITADVEVGKIYEGKVARLMDFGAFVTILPGRDGLVHISQICEERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E VRVKVL +D +GRI+LSM
Sbjct: 660 QSVSDKLSEGDHVRVKVLEVDKQGRIRLSM 689
>gi|440509689|ref|YP_007347125.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
chromaiodes str. 640]
gi|440453902|gb|AGC03394.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
chromaiodes str. 640]
Length = 699
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/691 (56%), Positives = 508/691 (73%), Gaps = 1/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ + II FKYG + + ++IG IARQA ++V+VS+ DT +L TVVS +FFPL
Sbjct: 1 MLDPIIHKFKYGQHTVILDIGTIARQANAAVMVSMSDTTVLVTVVSSNQVRLEQDFFPLV 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+ PG FF+REG+PSE E + SRLIDRPIRPLFP+G++N++Q+V V+SV
Sbjct: 61 VNYQERTYAAGKFPGGFFRREGRPSENEILTSRLIDRPIRPLFPKGFINDVQVVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI +IIGVS ALS+S++PF GP+G A+VGYI +Y+LNPT +L S LDL+++
Sbjct: 121 NPQVNPDIVAIIGVSAALSLSDIPFFGPIGAARVGYIKNQYVLNPTATELSNSKLDLVIS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE I+ VESES L E IL+AIIFGHE+ +I I+ IN+LV+ VG+ K +W+ +
Sbjct: 181 GTESNILMVESESCLLSEKEILDAIIFGHEQQQIVIHNINKLVKKVGKTKYSWNEKEVNI 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN-ENLTIDINDINCILY 362
+L + + + E + + Y +K+ R +I KDI +++++ ++ +D +I +L
Sbjct: 241 SLKTYLSELYESRAQDIYCFFDKKERHAQVDSIKKDIVKTVLNSYQHAAVDEKEIMYLLN 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE++ IR +IL LRID R + IR I I+TGILPRTHGS+LFTRGDTQALV TLGT
Sbjct: 301 YLEAQSIRYRILTNKLRIDGRSQDTIRKIDIKTGILPRTHGSALFTRGDTQALVAVTLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G D F+LHYN PP+ G+IG IG PKRREIGHGRLAKR +L V+PN
Sbjct: 361 ERDAQNIDGLTGIRVDRFLLHYNFPPYCVGEIGVIGAPKRREIGHGRLAKRGMLAVMPNA 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
N+F Y+IR+VSEITESNGSSSMAS+CG LAL+DAGVPI VAG+AMGLIK+G V+L
Sbjct: 421 NEFPYTIRVVSEITESNGSSSMASICGTSLALMDAGVPIKASVAGVAMGLIKEGNDFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDI+ DED GDMDFKV+G+ GITALQMDIK GITYDII IAL KAK IL+ M+
Sbjct: 481 SDIVSDEDHIGDMDFKVSGSRQGITALQMDIKTDGITYDIINIALKKAKNARLQILDVME 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ E+SKFAPR+ +IK++P KI+DVIGKGGS IR+LTEET T IDI D GII I
Sbjct: 541 QIIKFPNQEISKFAPRIYSIKVNPDKIKDVIGKGGSVIRSLTEETNTIIDIEDNGIIKIV 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + ++A RRI +T +V+IG VYTG V + +FGA + ILSGK+GL+HISQIS +R
Sbjct: 601 ALDYDKAKQAIRRINDITANVEIGAVYTGKVSHIVEFGAFVTILSGKEGLVHISQISERR 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+N +TD+LK QKV VKVL ID +GRI+LSM
Sbjct: 661 INKVTDYLKLGQKVLVKVLEIDRQGRIRLSM 691
>gi|262274879|ref|ZP_06052690.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
101886]
gi|262221442|gb|EEY72756.1| polyribonucleotide nucleotidyltransferase [Grimontia hollisae CIP
101886]
Length = 709
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/689 (51%), Positives = 507/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ +++E G +ARQAT++V+VS++DT + +VV KD +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKDAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDHFKNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P ++PDI ++IG S ALSIS +PF GP+G A+VGYI+ + +LNP+ ++L++S LDL+VAG
Sbjct: 121 PNVNPDIVAMIGTSAALSISGIPFNGPIGAARVGYINDELVLNPSNKELEESRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ +L E+ +L A++FGH++ ++ INAI E V W +
Sbjct: 181 TDNAVLMVESEADRLSEEQMLQAVVFGHDQQQVVINAIKEFAAEVATPAWEWSAPEVNTE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +++ ++E ++ +AYQI K R I + L++ + ++D +I +L L
Sbjct: 241 LKARVAELAEAQLTEAYQITEKMARYTRVGEIKSAVVEQLLEQDE-SLDAREIQGMLSSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +++R +I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT R
Sbjct: 300 EKQVVRSRIIAGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID + GE TD+F+ HYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+ +
Sbjct: 360 DAQIIDEITGERTDNFLFHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSQEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI + VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKKSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTDDGVTALQMDIKIEGITKEIMQIALNQAKGARLHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S+FAPR+ TIKI+P KI+DVIGKGG+ IR LTEET T I+I D+G + IA+
Sbjct: 540 ISSARDDISEFAPRIHTIKINPEKIKDVIGKGGAVIRALTEETDTTIEIEDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + A RIE LT V++G++YTG V R+ DFG + ++ K+GL+HISQ++ KR+
Sbjct: 600 DGEKAKAAIARIEALTAEVEVGRIYTGKVTRIVDFGCFVSVIGTKEGLVHISQVADKRIE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+++ Q+V+VKVL ID +GRI+LSM
Sbjct: 660 KVSDYVEMGQEVQVKVLEIDRQGRIRLSM 688
>gi|343494423|ref|ZP_08732685.1| polynucleotide phosphorylase/polyadenylase [Vibrio nigripulchritudo
ATCC 27043]
gi|342825328|gb|EGU59827.1| polynucleotide phosphorylase/polyadenylase [Vibrio nigripulchritudo
ATCC 27043]
Length = 707
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/689 (52%), Positives = 500/689 (72%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ ++IE G IARQAT++V+V+++DT + +VV K+ +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTIETGAIARQATAAVMVNMDDTAVFVSVVGKKEAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+VAG
Sbjct: 121 PDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELESSKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ L E+ +L+A+++GH++ + I AI E V W+ ++
Sbjct: 181 TDNAVLMVESEADNLTEEEMLSAVVYGHDQQQAVITAIKEFAAEVATPAWEWEAPAENTE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +++ ++ + +AYQI K R I ++ +L+ + +D +I +L L
Sbjct: 241 LKARVAELAVSRFEEAYQITEKMARYEQVGTIKNEVVEALLAQDE-ELDEREIRGMLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + +R + ++TG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKNVVRSRIIAGNPRIDGREKDMVRALDVQTGVLPRTHGSSLFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+ ++
Sbjct: 360 DAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S+FAPR+ T+KI+ KI+DVIGKGG+ IR LTEETGT I+I D+G I IA+
Sbjct: 540 ISGAREDISEFAPRIHTMKINADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +EA RRIE++T V++G +YTG V R+ DFGA + +L GK+GL+HISQI+ KR+
Sbjct: 600 EGTAAKEAIRRIEEITAEVEVGTIYTGKVTRIVDFGAFVAVLGGKEGLVHISQIADKRIE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D L E Q+V+VKVL ID + RI+LSM
Sbjct: 660 KVADHLSEGQEVKVKVLEIDRQNRIRLSM 688
>gi|269137767|ref|YP_003294467.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
EIB202]
gi|387866511|ref|YP_005697980.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
FL6-60]
gi|267983427|gb|ACY83256.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
EIB202]
gi|304557824|gb|ADM40488.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
FL6-60]
Length = 707
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/690 (53%), Positives = 506/690 (73%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ ++ F+YG + +++E G +ARQAT++V+V+++DT + TVV K +FFPLT
Sbjct: 1 MLTPTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+AYAAGR PG FF+REG+P E ET+ +RLIDRPIRPLFPEG+LNE+Q+V V+SV
Sbjct: 61 VNYQERAYAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ+ PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTMDELKQSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L ED +L A++FGH++ ++ I I L VG+ + W +
Sbjct: 181 GTDNAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWHAPEVNV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ ++E ++ +AY I KQ R I + + L+ E+ +D +I+ IL
Sbjct: 241 ALQHRVAEMAEARLGEAYHITEKQARYAKVDEIKESVIVDLL-AEDDALDAGEISDILGA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKAVVRGRVLRGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE TD F+LHYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQNIDELTGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + V+LS
Sbjct: 420 AFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G++Y G V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGDKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 EKVTDYLQMGQEVAVKVLEVDRQGRVRLSI 689
>gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase [Candidatus Blochmannia floridanus]
gi|81666682|sp|Q7VQM0.1|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome
[Candidatus Blochmannia floridanus]
Length = 697
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/691 (54%), Positives = 496/691 (71%), Gaps = 1/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+ F+YG + + + G IARQA ++V+VSI DT +L TVVS FFPL
Sbjct: 1 MLNSIVHKFQYGQHTVVLNTGAIARQANAAVMVSIGDTTVLVTVVSSNQEKIDQGFFPLV 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y E+ YAAG+ PG FF+REG+PSE E + SRLIDRPIRPLFP+G+LN+IQI+ V+SV
Sbjct: 61 VHYQERTYAAGKFPGGFFRREGRPSESEILTSRLIDRPIRPLFPKGFLNDIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI PDI ++IGVS ALS+S++PF GP+G A+VGYI +YILNPTT +L S LDL+VA
Sbjct: 121 NPQIHPDIVAMIGVSAALSLSDIPFFGPIGAARVGYIKDQYILNPTTIELSNSKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ I+ VES + L E +LNAI+FGHE+ + I IN+LV+ G+ K +W D
Sbjct: 181 GTDSNILMVESAACVLSEQEMLNAIVFGHEQQQTVIQNINQLVKKAGKVKYDWKLKDMDI 240
Query: 304 TLISKIINISEHKIRKAYQIK-NKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + N+ ++ + + NK+ R NI DI + N ID+N++ L
Sbjct: 241 LLSEYLSNLYRSRVNVSCLVGVNKKDRQEQLNNIKHDIIDITLREYNENIDVNEVMSFLN 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+LE K++R IL +R D R + IR I I GILPRTHGS+LFTRGDTQALV ATLGT
Sbjct: 301 NLEIKLLRSSILRDNVRFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q +D L G+ D F+LHYN PP+ TG+IG +G P+RREIGHGRLAKR +L V+PN+
Sbjct: 361 ERDAQNLDELTGDRVDRFLLHYNFPPYCTGEIGIVGAPRRREIGHGRLAKRGMLAVMPNS 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
N+F Y++R+VSE+TESNGSSSMAS+CG LAL+DAGVPI E VAG+AMGLIK+ +IL
Sbjct: 421 NEFPYTVRVVSEVTESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKENSNFIIL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDI+ DED GDMDFKV+GT GITALQMDIKI GITYDII+++ KA+ L IL+ M
Sbjct: 481 SDIISDEDHIGDMDFKVSGTRTGITALQMDIKIKGITYDIIEVSFKKARCALLRILDIMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ +IKI+P KI+DVIGKGGS IR LTE+T T IDI D+G+I +
Sbjct: 541 QVIKIPRKDISEFAPRIYSIKINPDKIKDVIGKGGSVIRALTEKTSTIIDIEDDGVIKVI 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
S N+ ++A RI+++T ++ IG +YTG V + DFGA + + +GK+GL+HISQI+ KR
Sbjct: 601 SLNAEKAKQAVDRIQEITANIAIGSIYTGRVTHIVDFGAFVTLFAGKEGLVHISQITEKR 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN ++D+LK Q+V VKVL ID +GR++LSM
Sbjct: 661 VNRVSDYLKLGQEVLVKVLEIDRQGRMRLSM 691
>gi|392541172|ref|ZP_10288309.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
piscicida JCM 20779]
gi|409203899|ref|ZP_11232102.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
flavipulchra JG1]
Length = 708
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 489/691 (70%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGRREAAPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAGRIPG F KREG+PS+ ET+ +RLIDRPIRPLFP+G++NE+Q++ V+SVN
Sbjct: 61 NYQEKMYAAGRIPGGFLKREGRPSDGETLTARLIDRPIRPLFPDGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PDI ++IG S AL+IS +PF GPLG A+VG+IDG+Y+LNPT ++L+ S LDL+VAG
Sbjct: 121 PEIQPDIVALIGTSAALAISGIPFNGPLGAARVGFIDGQYVLNPTLKELETSKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ L E+ +L A+++GHE+ + I AI E G+ +W KD T
Sbjct: 181 TENAVLMVESEAEVLTEEEMLGAVVYGHEQSQAIIKAIEEFRAEAGKAAWDWTAPEKDLT 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L K+ I+E K+ AY+I +K R ++ L E ++D +
Sbjct: 241 LAEKVAAIAEQKVGDAYRITDKVARKEALSEAKAEVIEKLGAEVAEGESLDEQVVGKTFS 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I+ RID R + +R + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRSRIIAGEKRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q +D L G FMLHYN PPF G+ G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDAQMLDDLTGTHKHHFMLHYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YS+R+VSEITESNGSSSMASVCG LAL++AGVP+ VAGIAMGL+K+GE V+L
Sbjct: 421 AEFPYSVRVVSEITESNGSSSMASVCGTSLALMNAGVPVKASVAGIAMGLVKEGEDFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITKEIMQIALRQAKAARLHILGVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS+FAPR+ T+KI KI +VIGKGG+TIR LTEET T I+I D+G I IA
Sbjct: 541 QAISAPSEELSEFAPRIYTMKIPAKKIAEVIGKGGATIRQLTEETDTTIEIEDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ N S Q A RIE LT +++G +YTG V+R+ DFGA + +L GKDGL+HISQIS +R
Sbjct: 601 ATNGNSAQAAISRIEALTAELEVGTLYTGKVIRIVDFGAFVNVLPGKDGLVHISQISEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN ++D L Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNNVSDHLTVGQEVKVKVLEVDRQGRVRLSI 691
>gi|344200724|ref|YP_004785050.1| polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrivorans SS3]
gi|343776168|gb|AEM48724.1| Polyribonucleotide nucleotidyltransferase [Acidithiobacillus
ferrivorans SS3]
Length = 692
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/686 (54%), Positives = 497/686 (72%), Gaps = 2/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K +G ++ +E G +ARQA +VLVS DTV+L T V+ ++ +FFPLTV+Y
Sbjct: 4 IRKEVDFGGRRLQLETGRMARQADGAVLVSSGDTVVLVTAVARREMKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EKAYAAG+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ VLSV+
Sbjct: 64 EKAYAAGKIPGGFFKREGRPAEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVLSVDRDN 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DPDI +++G S AL+IS +PF GP+G A+VGYIDG+Y+LNP+ QL S LDL+V+GT +
Sbjct: 124 DPDILALVGASAALAISGIPFNGPIGAARVGYIDGQYVLNPSYSQLSSSQLDLVVSGTRQ 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++QL E+I+L A++FGH + + I I L + G+ + W V D L +
Sbjct: 184 AVLMVESEAQQLSEEIMLEAVMFGHAQFQPVIETIEALAREAGKSRWEWVAPVADAALGA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+ + +++AY + +KQ R + + + + + + D+ + +L +E+
Sbjct: 244 LVREKATPLLQEAYALMDKQARSKRLEEVQQSMAIAFAAEDAQRGDL--VRGLLKKIETS 301
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R +ILD RID R +RPI+I G+LPRTHGS+LFTRG+TQALVVATLGT DEQ
Sbjct: 302 IVRGRILDGAPRIDGRDSRTVRPITIEAGVLPRTHGSALFTRGETQALVVATLGTKGDEQ 361
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDAL GE D FMLHYN PPF+TG+ G +G PKRREIGHGRLAKRA+ VLP+N++F Y
Sbjct: 362 IIDALQGESRDRFMLHYNFPPFSTGETGMVGSPKRREIGHGRLAKRAIAAVLPSNSEFPY 421
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
S+R+VSE+ ESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DILG
Sbjct: 422 SLRVVSEVLESNGSSSMATVCGASLALMDAGVPLKAPVAGVAMGLIKEGDRFAVLTDILG 481
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I+ AL +A G +IL M +
Sbjct: 482 DEDHLGDMDFKVAGTEQGVTALQMDIKIDGITREIMAQALKQALAGRLHILGLMNGVLSM 541
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ELS +APR+ITI+I+P +IRDVIG GG IR LTEETG IDI D G +TIAS +
Sbjct: 542 SRGELSDYAPRIITIQINPDRIRDVIGPGGKVIRALTEETGATIDIQDNGTVTIASVDGE 601
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+G AKRRIE LT VQ+ +Y G V ++ DFGA + IL G+DGLLHISQISS+RV+ +
Sbjct: 602 AGAAAKRRIELLTADVQVDTIYDGKVAKIMDFGAFVTILPGRDGLLHISQISSERVSDVH 661
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D LKE Q VRVKVL +D +G+IKLSM
Sbjct: 662 DHLKEGQAVRVKVLEVDRQGKIKLSM 687
>gi|308050580|ref|YP_003914146.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
9799]
gi|307632770|gb|ADN77072.1| polyribonucleotide nucleotidyltransferase [Ferrimonas balearica DSM
9799]
Length = 698
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/689 (55%), Positives = 502/689 (72%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N +IKSF YG + +++E G IARQA ++VL S+ DT +L TVV K+ +FFPLTV
Sbjct: 1 MNPVIKSFPYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKNVQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+G++NE+Q++ V+SV
Sbjct: 61 NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPKGFMNEVQVIATVVSVE 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PD+ ++IG S AL++S +PF GP+G A+VG+ DG+Y+LNP+ E+LK S LDL+VAG
Sbjct: 121 PAVSPDVVAMIGTSAALALSGIPFNGPIGCARVGFRDGEYLLNPSVEELKTSKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ L E+I+L A++FGH+ + I AINEL G+ +W VK++
Sbjct: 181 TESAVLMVESEAEVLSEEIMLGAVMFGHQAQQTVIQAINELKAEAGKPAWDWSAPVKNEA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +K+ +++ + AY+I K R L N K + I EN D +++ +L L
Sbjct: 241 LAAKVAELAQAGLGDAYRITEKVAR-LEAVNAVKAQAKAAILAENPEQDEQELSNLLGSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R IR +S+ G+LPRTHGS+LFTRG+TQALV ATLGT R
Sbjct: 300 EKSVVRSRIIAGEPRIDGRDTKMIRALSVLPGVLPRTHGSALFTRGETQALVAATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L+GE TD FMLHYN PPF G+ G IG PKRREIGHG+LAKR + V+P +
Sbjct: 360 DGQIIDELIGERTDRFMLHYNFPPFCVGETGFIGSPKRREIGHGKLAKRGVQAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDNFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+QIAL +A + +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITQEIMQIALKQAFEARVHILGVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + ELS APR+ TIKI P KIR+VIGKGG+TIR LTEETGT I+I D+G + +AS
Sbjct: 540 LPAPRAELSMHAPRITTIKIHPDKIREVIGKGGATIRALTEETGTTIEIEDDGTVKVAST 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + EA RRIE++T V+ G++Y G V+R+ DFGA + IL GKDGL+HISQI +RVN
Sbjct: 600 DGAAAAEAIRRIEEITSDVEEGRIYKGKVVRIVDFGAFVNILPGKDGLVHISQICEERVN 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L Q+V VKV+ +D +GRI+LSM
Sbjct: 660 NVSDHLTMGQEVDVKVIEVDRQGRIRLSM 688
>gi|431930130|ref|YP_007243176.1| polyribonucleotide nucleotidyltransferase [Thioflavicoccus mobilis
8321]
gi|431828433|gb|AGA89546.1| polyribonucleotide nucleotidyltransferase [Thioflavicoccus mobilis
8321]
Length = 731
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/687 (54%), Positives = 499/687 (72%), Gaps = 1/687 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F+YGS +++E GEIARQA +VLV+++DTV+L TVV K +F PLTV+Y
Sbjct: 33 IRKTFQYGSQTVTLETGEIARQADGAVLVNMDDTVVLVTVVVAKKVGVARDFLPLTVEYQ 92
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FF+REG+PSE E + +RLIDRPIRPLF +G+ NE+Q++ V S+N +
Sbjct: 93 EKTYAAGRIPGGFFRREGRPSEAEILTARLIDRPIRPLFADGFTNEVQVIATVKSLNTSV 152
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQL-KKSHLDLLVAGTE 246
+P++ ++IG S AL+IS +PF GP+G +VGY DG+YILNP L S LDL+VAGTE
Sbjct: 153 NPEVPAMIGASAALAISGVPFNGPIGAVRVGYKDGEYILNPAMVGLGPDSDLDLVVAGTE 212
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE++ L ED++L A++FGHE+M++AI AI EL G+ ++W P D L
Sbjct: 213 NAVLMVESEARGLSEDVMLGAVLFGHEQMQVAIQAIRELAAEAGKPPMDWSPAESDVELT 272
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
+ +I +AY+I K R I ++ + L E + + LE
Sbjct: 273 EAVAAACAERIAEAYRIVEKLERYQALDAIRAEVVAGLCGGEAPQWTEPQVTGAIESLEK 332
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
K +R IL RID R +RPI+IR G+LPRTHGS+LFTRG+TQA+VV TLGT RD
Sbjct: 333 KTVRAAILAGQPRIDGRDNRTVRPITIRVGVLPRTHGSALFTRGETQAMVVTTLGTERDS 392
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q IDAL GE + FMLHYN PPF G+IGR+G PKRREIGHGRLAKR +L V+P ++F
Sbjct: 393 QIIDALGGERREHFMLHYNFPPFCVGEIGRVGSPKRREIGHGRLAKRGVLAVMPGIDEFP 452
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
YS+R+VSEITESNGSSSMASVCG L+L+DAGVP+ VAG+AMGLIK+GE+ +L+DI+
Sbjct: 453 YSVRVVSEITESNGSSSMASVCGTSLSLMDAGVPVKAAVAGVAMGLIKEGEQFAVLTDIM 512
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGT++GI ALQMDIKI GIT +I+++AL +AK+G +IL +M +
Sbjct: 513 GDEDHLGDMDFKVAGTMDGINALQMDIKIEGITKEIMEVALGQAKEGRLHILGEMGKVIE 572
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
++E+S+ APR+I +KI P KIRDVIGKGG+TIR +TEETG IDI+D+G++ I S +
Sbjct: 573 GHRSEMSEHAPRIIELKIHPEKIRDVIGKGGATIRAMTEETGATIDISDDGLVKIFSVDK 632
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+G+EAKRRI +T V++GK+Y G V+RL DFGA ++IL G+DGL+HISQIS +RV +
Sbjct: 633 SAGEEAKRRIRLITADVEVGKIYEGKVVRLMDFGAFVQILPGRDGLVHISQISEERVQKV 692
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
+D L E VRVKVL +D +GRI+LSM
Sbjct: 693 SDKLAEGDVVRVKVLEVDKQGRIRLSM 719
>gi|334705597|ref|ZP_08521463.1| polynucleotide phosphorylase/polyadenylase [Aeromonas caviae Ae398]
Length = 691
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/668 (54%), Positives = 491/668 (73%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K+ +FFPLTV+Y E+ YAAGRIPG FF+REG
Sbjct: 1 MARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIPGGFFRREG 60
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q+V V+SVNP + PDI ++IG S AL+IS
Sbjct: 61 RPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIVAMIGASAALAISG 120
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+G A+VGY++G+Y+LNPTT +L +S LDL+VAGT A++ VESE+ L E+++L
Sbjct: 121 IPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAGTANAVLMVESEAAILSEEVML 180
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A+++GHE+M+ INAINE +VG K +W P ++ L +K+ ++ ++ +AY+I
Sbjct: 181 GAVVYGHEQMQTVINAINEFAADVGTKPWDWTPPAVNEALKAKVAELATAELGEAYRITE 240
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
K +R T I + +I + + D I + LES+I+R +++ RID R
Sbjct: 241 KAVRYETIAAIKGRVVEQVIAS-GVEEDAKKIGEEFHSLESRIVRGRVVRGEPRIDGRDP 299
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
IR +S+ TGILPR HGS+LFTRG+TQA+VVATLGT RD Q ID L G D FMLHYN
Sbjct: 300 EMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELTGNRADRFMLHYN 359
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y +R+VSEITESNGSSSMA
Sbjct: 360 FPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVSEITESNGSSSMA 419
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILGDED GDMDFKVAGT G
Sbjct: 420 SVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLGDMDFKVAGTSEG 479
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
+TALQMDIKI GIT +I++IAL +A+ +IL+ M + + ++S FAPR+ TIKI+
Sbjct: 480 VTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAQISDFAPRIHTIKIN 539
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+++D+G + I++ + + EA RRIE +T +++
Sbjct: 540 PEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVANEAAMEAIRRIEAITAEIEV 599
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
++Y G V+RL DFGA + IL GKDGL+HISQI+ RV + DFLK V+VKVL +D
Sbjct: 600 NRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADFLKIGDVVKVKVLEVDR 659
Query: 746 RGRIKLSM 753
+GR++LS+
Sbjct: 660 QGRVRLSI 667
>gi|322514215|ref|ZP_08067277.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
ATCC 25976]
gi|322119908|gb|EFX91917.1| polyribonucleotide nucleotidyltransferase [Actinobacillus ureae
ATCC 25976]
Length = 707
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/689 (53%), Positives = 501/689 (72%), Gaps = 2/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K FKYG + +++E G IARQAT++V+ S++DT + TVV+ KD +FFPLTV
Sbjct: 1 MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YA GRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQ+V V+SVN
Sbjct: 61 NYQERTYAVGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PD+ ++IG S ALS+S +PF GP+G A++G+I+ +++LNPT + K+S LDL+VAG
Sbjct: 121 PQISPDLVAMIGASAALSLSGVPFNGPIGAARIGFINDQFVLNPTISEQKQSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L E+ +L+A++FGH++ ++ I I E V+ G+ + +W +
Sbjct: 181 TDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
LI+++ ++E +I AY+I KQ R I D+ + L + TI I I+ L
Sbjct: 241 LINQVKALAEARIGDAYRITEKQARYEQIDVIKADVIAQLTAQDE-TISEGAIVDIITAL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
ES ++R +IL RID R V+ +R + I TG+L RTHGS++FTRG+TQAL VATLGT R
Sbjct: 300 ESSVVRGRILAGEPRIDGRTVDTVRALDICTGVLARTHGSAIFTRGETQALAVATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +L V+P +
Sbjct: 360 DAQIIDELTGEKSDRFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPTAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ EK V+LSD
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMGQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P ++S FAPR+ T+KIDP KI+DVIGKGG+ IR LTEETGT IDI+D+G + IA+
Sbjct: 540 IP-APADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGTSIDIDDDGTVKIAAT 598
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
++ + + RIE + V++ +Y G V+R+ DFGA + IL GK+GL+HISQI+++RV
Sbjct: 599 DNNAAKTVMARIEDIVAEVEVNAIYKGKVIRVVDFGAFVSILGGKEGLVHISQITNERVE 658
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D+L Q+V VKV+ ID + RI+L+M
Sbjct: 659 RVADYLNVGQEVAVKVVEIDRQNRIRLTM 687
>gi|77359947|ref|YP_339522.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
haloplanktis TAC125]
gi|123588883|sp|Q3IJ73.1|PNP_PSEHT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|76874858|emb|CAI86079.1| polynucleotide phosphorylase, has polyadenylase activity; part of
the degradosome [Pseudoalteromonas haloplanktis TAC125]
Length = 708
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/694 (54%), Positives = 499/694 (71%), Gaps = 8/694 (1%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G +VGYIDG+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVALIGTSAALAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ L EDI+L A+++GHE+ + I AI E G+ +W K+ +
Sbjct: 181 TDNAVLMVESEADVLAEDIMLGAVVYGHEQAQAIITAIKEFKAEAGKPTWDWTAPAKNVS 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKD-----IYSSLIDNENLTIDINDINC 359
L K+ +I+ K+ +AY+I +K R ++KD + S L + E+L D +I
Sbjct: 241 LEEKVASIAADKVGEAYRITDKVARKEAL-GVAKDEVVAVLTSELAEGESL--DKQEIGK 297
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV AT
Sbjct: 298 IFGSLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTAT 357
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+
Sbjct: 358 LGTERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVM 417
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P +F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ +K
Sbjct: 418 PTLTEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKF 477
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
V+LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +ILE
Sbjct: 478 VVLSDILGDEDHLGDMDFKVAGTAGGITALQMDIKIEGITQEIMQIALKQAKAARLHILE 537
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M + ELS+FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I
Sbjct: 538 VMDKAISAPSEELSQFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTI 597
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS
Sbjct: 598 KIAATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQIS 657
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN +TD L E Q+V+VKVL +D +GR++LS+
Sbjct: 658 TERVNNVTDHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|400406562|ref|YP_006589310.1| polyribonucleotide nucleotidyltransferase [secondary endosymbiont
of Heteropsylla cubana]
gi|400364815|gb|AFP85882.1| polyribonucleotide nucleotidyltransferase [secondary endosymbiont
of Heteropsylla cubana]
Length = 705
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/690 (54%), Positives = 500/690 (72%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ + I+ F+YG + +++E IARQAT+SV+V+++DT + TVV K NFFPLT
Sbjct: 1 MLHPIVLKFQYGQHTVTLETNMIARQATASVMVTMDDTAVFLTVVGEKQEKPGQNFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E++YA GR PG FF+REG+ SE E +ISRLIDR IRPLFPE +LNE+QIV V+SV
Sbjct: 61 VNYQERSYAIGRFPGGFFRREGRSSENEILISRLIDRSIRPLFPEDFLNEVQIVATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S +S+S +PF GP+G A+VGYI+ +YILNPT +L S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAVMSLSGIPFNGPVGAARVGYINNQYILNPTQIELSSSRLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L ED +L A+I+GH + +I I++IN L+ KK +W +
Sbjct: 181 GTKDAVLMVESEANILNEDQMLGAVIYGHNQQQIVIDSINRLIAQSEPKKWSWKTKEINV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++I ++E ++ AYQI KQIR I D+ L ++ T+D N+I IL
Sbjct: 241 DLKNRIALLAESRLNDAYQITEKQIRYTAIDAIKTDVIIDLT-TQDETLDANEIKKILGM 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE I+R +IL RID R + IR + IRTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 LEKNIVRNRILHGKPRIDGREKDMIRSLDIRTGVLPRTHGSALFTRGETQALVTATLGTE 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L GE TD F+LHYN PP+ G++G IG PKRREIGHGRLAKR +L V+P +
Sbjct: 360 RDAQCLDELTGERTDRFLLHYNFPPYCVGEMGTIGAPKRREIGHGRLAKRGVLAVMPTAS 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ ++LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKGAVAGIAMGLVKEDNNFIVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ GITALQMDIKI GIT +++QIAL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSFEGITALQMDIKIAGITREVMQIALNQAKGARLHILRVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + +LS+FAPR+ TIKI KIRDVIGKGGS IRTL E+TGT I+I D+G + +A
Sbjct: 540 AISTPRKDLSEFAPRIHTIKISQDKIRDVIGKGGSVIRTLIEKTGTTIEIEDDGTVKVAG 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
NS + A R IE++T +Q+G++Y+G V R+ DFGA + I S K+GL+HISQIS KRV
Sbjct: 600 TNSEKARYAIRCIEEITAEIQLGRIYSGKVTRIVDFGAFVSISSSKEGLVHISQISDKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L+ QKV VKVL ID +GRI+LS+
Sbjct: 660 EKVSDYLELGQKVLVKVLDIDRQGRIRLSL 689
>gi|406938480|gb|EKD71703.1| hypothetical protein ACD_46C00120G0005 [uncultured bacterium]
Length = 699
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/692 (54%), Positives = 506/692 (73%), Gaps = 8/692 (1%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTST-YNFFPLTVDY 126
I K+F+YG++ +++E G IARQATS+V+V+++DTV+L T+V CKD S +FFPLTV+Y
Sbjct: 4 IKKTFRYGNHDVTLETGAIARQATSAVMVTMDDTVVLVTLV-CKDSASEDKDFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
E+ YAAGRIPG +FKREGKPSE+ET+ SRLIDRP+RPLFP+G+ E+Q++ VLS+NP+
Sbjct: 63 QERTYAAGRIPGGYFKREGKPSEKETLTSRLIDRPLRPLFPKGFNFEVQVIATVLSMNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+D DI +++G + A+++S LP L AKVGY DG YILNPT QL S L+++VAGTE
Sbjct: 123 VDSDIPAMLGAAAAVALSGLPATSHLAAAKVGYQDGNYILNPTIPQLDTSELNMVVAGTE 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VESE+K+L E ++L A++F H +M+ IN I E+V G K +W P L
Sbjct: 183 NAVLMVESEAKELSESVMLGAVMFAHREMQTVINIIKEMVTESGVTKWDWSPQTIKSDLQ 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTID-----INDINCIL 361
+ + + + KAYQI++KQ R +I + ++ EN++ + DI I
Sbjct: 243 KRAHDFCKADVEKAYQIRDKQERQQAISDIRDRVVEQML-TENVSKEDEATLEQDIKYIF 301
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LES ++R +IL RID R +RPISI+TG+LPRTHGS++FTRG+TQA+VVATLG
Sbjct: 302 AHLESDVVRSRILQGQPRIDGRDTKTVRPISIQTGMLPRTHGSAVFTRGETQAIVVATLG 361
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T RD Q IDAL GE D+FMLHYN PPF+ G++G +G PKRREIGHG LAKR++ +LP
Sbjct: 362 TERDAQVIDALEGERKDTFMLHYNFPPFSVGEVGMVGSPKRREIGHGNLAKRSVSAILPE 421
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
FNY IR+VSEITESNGSSSMA+VCG LAL+DAGVPI HVAG+AMGL+K+G++ +
Sbjct: 422 QKDFNYVIRIVSEITESNGSSSMATVCGSSLALMDAGVPIKSHVAGVAMGLVKEGDQFAV 481
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT I+ AL +A+ G +IL M
Sbjct: 482 LTDILGDEDHLGDMDFKVAGTTTGVTALQMDIKIDGITEAIMNKALEQARDGRMHILGIM 541
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + E+S +APR+++++I P KIRDVIGKGG TIR LTEETGT +DI+D+G + +
Sbjct: 542 NQTINMPRQEMSAYAPRILSMRIPPDKIRDVIGKGGVTIRALTEETGTVVDISDDGAVKV 601
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + +EA RRIE+LT V +G +Y G V +L DFGA++ IL GK GL+HISQI+++
Sbjct: 602 AAADLAACEEAIRRIERLTADVVVGSIYEGTVTKLMDFGALVAILPGKQGLVHISQIANE 661
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
R+ ++D L E Q VRVKVL ID +GRI+LSM
Sbjct: 662 RIAQVSDKLAEGQVVRVKVLEIDRQGRIRLSM 693
>gi|119470827|ref|ZP_01613438.1| polynucleotide phosphorylase, has polyadenylase activity; part of
the degradosome [Alteromonadales bacterium TW-7]
gi|119446054|gb|EAW27333.1| polynucleotide phosphorylase, has polyadenylase activity; part of
the degradosome [Alteromonadales bacterium TW-7]
Length = 708
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/694 (54%), Positives = 498/694 (71%), Gaps = 8/694 (1%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G A+VGYI G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGAARVGYIGGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ L ED++L A+++GHE+ + INAINE G+ +W K+ +
Sbjct: 181 TDNAVLMVESEADVLAEDVMLGAVVYGHEQSQSIINAINEFKAEAGKPTWDWTAPEKNVS 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKD-----IYSSLIDNENLTIDINDINC 359
L K+ ++ K+ +AY+I +K R ++KD + S L + E T+D ++
Sbjct: 241 LEEKVAELAADKVGEAYRITDKVARKEAL-GVAKDAVIEALSSELAEGE--TLDKQEVGK 297
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+ LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV AT
Sbjct: 298 VFGSLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTAT 357
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+
Sbjct: 358 LGTERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVM 417
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ EK
Sbjct: 418 PTLTDFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKF 477
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
V+LSDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+QIAL +AK +ILE
Sbjct: 478 VVLSDILGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILE 537
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M + ELS FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I
Sbjct: 538 VMDEAISAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTI 597
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS
Sbjct: 598 KIAATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQIS 657
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 658 TERVNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|421496536|ref|ZP_15943764.1| polynucleotide phosphorylase/polyadenylase [Aeromonas media WS]
gi|407184524|gb|EKE58353.1| polynucleotide phosphorylase/polyadenylase [Aeromonas media WS]
Length = 694
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/668 (54%), Positives = 490/668 (73%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K+ +FFPLTV+Y E+ YAAGRIPG FF+REG
Sbjct: 1 MARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIPGGFFRREG 60
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+ISRLIDRPIRPLFPEG+LNE+Q+V V+SVNP + PDI ++IG S AL+IS
Sbjct: 61 RPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIVAMIGASAALAISG 120
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+ A+VGY++G+Y+LNPTT +L +S LDL+VAGT A++ VESE+ L E+++L
Sbjct: 121 IPFGGPIAAARVGYMNGQYVLNPTTTELPQSDLDLVVAGTANAVLMVESEAAILSEEVML 180
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A+++GHE+M++ INAINE +VG + +W P ++ L +K+ ++ ++ +AY+I
Sbjct: 181 GAVVYGHEQMQVVINAINEFAADVGTQPWDWTPPAVNEALKAKVAELATAELGEAYRITE 240
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
K +R I + +I + + D I + LES+I+R +++ RID R
Sbjct: 241 KAVRYAAIGAIKGRVVEQVIAS-GVEEDAKKIGEEFHSLESRIVRGRVVRGEPRIDGRDP 299
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
IR +S+ TGILPR HGS+LFTRG+TQA+VVATLGT RD Q ID L G D FMLHYN
Sbjct: 300 EMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELSGHRADRFMLHYN 359
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y +R+VSEITESNGSSSMA
Sbjct: 360 FPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVSEITESNGSSSMA 419
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILGDED GDMDFKVAGT G
Sbjct: 420 SVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLGDMDFKVAGTTQG 479
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
ITALQMDIKI GIT +I++IAL +A+ +IL+ M + + E+S FAPR+ TIKI+
Sbjct: 480 ITALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAEISDFAPRIHTIKIN 539
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+++D+G + I++ + + EA RRIE +T +++
Sbjct: 540 PEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVANEAAMEAIRRIEAITAEIEV 599
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
++Y G V+RL DFGA + IL GKDGL+HISQI+ RV + DFLK V+VKVL +D
Sbjct: 600 NRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADFLKIGDVVKVKVLEVDR 659
Query: 746 RGRIKLSM 753
+GR++LS+
Sbjct: 660 QGRVRLSI 667
>gi|418361746|ref|ZP_12962393.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
subsp. salmonicida 01-B526]
gi|356686862|gb|EHI51452.1| polynucleotide phosphorylase/polyadenylase [Aeromonas salmonicida
subsp. salmonicida 01-B526]
Length = 692
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/668 (54%), Positives = 489/668 (73%), Gaps = 1/668 (0%)
Query: 86 IARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREG 145
+ARQAT++V+VS++DT + TVV K+ +FFPLTV+Y E+ YAAGRIPG FF+REG
Sbjct: 1 MARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIPGGFFRREG 60
Query: 146 KPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205
+PSE ET+ SRLIDRPIRPLFPEG+LNE+Q+V V+SVNP + PDI ++IG S AL+IS
Sbjct: 61 RPSEGETLTSRLIDRPIRPLFPEGFLNEVQVVATVMSVNPLVSPDIVAMIGASAALAISG 120
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIIL 265
+PF GP+ A+VGY++G+Y+LNPTT +L +S LDL+VAGT A++ VESE+ L E+++L
Sbjct: 121 IPFGGPIAAARVGYMNGQYVLNPTTAELPQSDLDLVVAGTANAVLMVESEAAILSEEVML 180
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKN 325
A+++GHE+M++ INAINE +VG + +W P ++ L +KI ++ ++ +AY+I
Sbjct: 181 GAVVYGHEQMQVVINAINEFAADVGTQPWDWTPPATNEALKAKIAELATAELGEAYRITE 240
Query: 326 KQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGV 385
K +R I + + +I + D I + LES+I+R +++ RID R
Sbjct: 241 KAVRYAAIGAIKQRVIEQVI-AAGVEDDAKKIGEEFHSLESRIVRGRVVRGEPRIDGRDP 299
Query: 386 NDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYN 445
IR +S+ TGILPR HGS+LFTRG+TQA+VVATLGT RD Q ID L G D FMLHYN
Sbjct: 300 EMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELAGHRADRFMLHYN 359
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y +R+VSEITESNGSSSMA
Sbjct: 360 FPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVSEITESNGSSSMA 419
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG 565
SVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILGDED GDMDFKVAGT G
Sbjct: 420 SVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLGDMDFKVAGTTQG 479
Query: 566 ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKID 625
ITALQMDIKI GIT +I++IAL +A+ +IL+ M + + E+S FAPR+ TIKI+
Sbjct: 480 ITALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAEISDFAPRIHTIKIN 539
Query: 626 PSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQI 685
P KI+DVIGKGGS IR LTEETGT I+++D+G + I++ + + EA RRIE +T +++
Sbjct: 540 PEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVANEAAMEAIRRIEAITAEIEV 599
Query: 686 GKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745
++Y G V+RL DFGA + IL GKDGL+HISQI+ RV + DFLK V+VKVL +D
Sbjct: 600 NRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADFLKLGDVVKVKVLEVDR 659
Query: 746 RGRIKLSM 753
+GR++LS+
Sbjct: 660 QGRVRLSI 667
>gi|392537111|ref|ZP_10284248.1| polynucleotide phosphorylase [Pseudoalteromonas marina mano4]
Length = 708
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/694 (54%), Positives = 498/694 (71%), Gaps = 8/694 (1%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G A+VGYI G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGAARVGYIGGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ L ED++L A+++GHE+ + INAINE G+ +W K+ +
Sbjct: 181 TDNAVLMVESEADVLAEDVMLGAVVYGHEQSQSIINAINEFKAEAGKPTWDWTAPEKNVS 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKD-----IYSSLIDNENLTIDINDINC 359
L K+ ++ K+ +AY+I +K R ++KD + S L + E T+D ++
Sbjct: 241 LEEKVAELAADKVGEAYRITDKVARKEAL-GVAKDAVIEALSSELAEGE--TLDKQEVGK 297
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+ LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV AT
Sbjct: 298 VFGSLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTAT 357
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+
Sbjct: 358 LGTERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVM 417
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ EK
Sbjct: 418 PTLTDFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKF 477
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
V+LSDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+QIAL +AK +ILE
Sbjct: 478 VVLSDILGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILE 537
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M + ELS FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I
Sbjct: 538 VMDEAISAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTI 597
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS
Sbjct: 598 KIAATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQIS 657
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 658 TERVNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|209694194|ref|YP_002262122.1| polynucleotide phosphorylase/polyadenylase [Aliivibrio salmonicida
LFI1238]
gi|208008145|emb|CAQ78287.1| polyribonucleotide nucleotidyltransferase [Aliivibrio salmonicida
LFI1238]
Length = 718
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/698 (51%), Positives = 510/698 (73%), Gaps = 2/698 (0%)
Query: 57 IMMKGNFLFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
I KG +F K ++KSF+YG++ +++E G +ARQAT++V+ S++DT + +VV+ K+ +
Sbjct: 3 IEAKGKKMFEKPVVKSFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVA 62
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+FFPLTV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+Q
Sbjct: 63 GQDFFPLTVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQ 122
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK 235
++ V+S+NP ++PD+ ++I S ALSI+ +PF GP+G A+VG+I+G+ +LNP+ +L
Sbjct: 123 VIATVVSINPDVNPDMITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELAN 182
Query: 236 SHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295
S LDL+V+GTE A++ VESE+ L E+ +L+A++FGH++ ++ I AINE V N
Sbjct: 183 SKLDLVVSGTEAAVLMVESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWN 242
Query: 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
W+ V + L +++ ++E ++ +AYQI K R I ++ ++L+ +N +D
Sbjct: 243 WEAPVVNAELKAQVAELAETRLSEAYQITEKMARYEQVGAIKSEVVAALL-VQNEALDER 301
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
+I +L LE ++R +I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQAL
Sbjct: 302 EIRGMLGALEKNVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAL 361
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
V ATLGT RD Q ID+LMGE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR +
Sbjct: 362 VTATLGTQRDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGI 421
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P+ +F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 422 AAVMPSVEEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKE 481
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
G+ V+LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+
Sbjct: 482 GDDFVVLSDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARK 541
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M + + ++S++APR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D
Sbjct: 542 HILTVMDEAISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIED 601
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G I IA+ + +EA RRIE++T V++GK+Y G V+R+ DFGA + +L K+GL+HI
Sbjct: 602 DGTIKIAATEGAAAKEAIRRIEEITAEVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHI 661
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +R+ + D L+ Q+V+ KVL ID +GRI+LS+
Sbjct: 662 SQIAEERIEKVADHLQVGQEVQTKVLEIDRQGRIRLSI 699
>gi|392551232|ref|ZP_10298369.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
spongiae UST010723-006]
Length = 713
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/691 (52%), Positives = 496/691 (71%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F++G +++++E G +ARQA ++V+ SI DT +L +VV ++ +FFPLTV
Sbjct: 1 MQPIIKKFQFGQHEVTLETGAVARQADAAVIASIGDTAVLVSVVGKREAAPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+PS+ ET+ +RLIDRPIRPLFP+G++NE+Q++ V+S++
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPSDGETLTARLIDRPIRPLFPDGFVNEVQVIATVVSID 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PDI ++IG S AL+IS +PF GPLG A+VGYI+ +Y+LNP+ +L +S LDL+VAG
Sbjct: 121 PEIKPDIVTLIGTSAALAISGIPFNGPLGAARVGYINDQYVLNPSATELVESKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ L ED++L A+++GHE+ + AI AINE G+ +W K+ T
Sbjct: 181 TENAVLMVESEAEVLSEDVMLGAVVYGHEQSQAAIKAINEFQAEAGKPAWDWTAPEKNVT 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L KI I+E K+ AY I +K R ++ L E+ ++D ++ +
Sbjct: 241 LADKIAAIAEEKVGAAYLITDKVARKEAISAAKAEVVEKLTAELAEDESLDEQEVGKLFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I+ RID R + +R + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRGRIIAGEKRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G TD FMLHYN PP+ G+ G +G PKRREIGHG LAKR + V+P+
Sbjct: 361 ERDAQMIDDLTGTKTDRFMLHYNFPPYCVGETGFVGSPKRREIGHGNLAKRGIAAVMPSL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YS+R+VSEITESNGSSSMASVCG LAL++AGVP VAGIAMGL+K+G+ V+L
Sbjct: 421 EEFPYSVRVVSEITESNGSSSMASVCGTSLALMNAGVPTKASVAGIAMGLVKEGDDFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAG+ G+TALQMDIKI GI +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGSSEGVTALQMDIKIEGINKEIMQIALNQAKAARMHILSVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ K ELS+FAPR+ + I P KI DVIGKGG+TIR LTEETGT I+I D+G + IA
Sbjct: 541 QAIDKPSEELSEFAPRIYVVNIPPKKIADVIGKGGATIRALTEETGTTIEIEDDGTVKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ N S + A R+E+LT +++G +Y+G V+R+ DFGA + +L GKDGL+HISQIS +R
Sbjct: 601 ATNGESARAAIARVEQLTAELEVGTIYSGKVVRIVDFGAFVNVLPGKDGLVHISQISEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D LK +V+VKVL +D +GR++LS+
Sbjct: 661 VNNVADHLKVGDEVQVKVLEVDRQGRVRLSI 691
>gi|407794964|ref|ZP_11141982.1| polynucleotide phosphorylase/polyadenylase [Idiomarina xiamenensis
10-D-4]
gi|407210041|gb|EKE79923.1| polynucleotide phosphorylase/polyadenylase [Idiomarina xiamenensis
10-D-4]
Length = 714
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/689 (54%), Positives = 500/689 (72%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K F+YG + +++E G +ARQA+ +VL S++DT +L TVV+ K+ NFFPLTV
Sbjct: 1 MNPITKKFQYGQHTVTLETGVMARQASGAVLASMDDTTVLVTVVAKKEAKEGQNFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFPEG++NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSENETLTARLIDRPIRPLFPEGFMNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
PQI PDI ++IG S AL+IS PF GP+GVA+VG ++ +Y+LNPT ++LK+S LDL+VAG
Sbjct: 121 PQIAPDIVAMIGTSAALAISGCPFNGPIGVARVGVLNNEYVLNPTQDELKESSLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ L ED++L A+++GHE + I AINE VG +K W +
Sbjct: 181 TEGAVLMVESEAQLLSEDVMLGAVVYGHEAQQSVITAINEFAAEVGNEKWEWQAPASNDA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L K+ ++E I +AY+I K R + + + L++ E+ +ID ++ I + +
Sbjct: 241 LHGKVKALAEDGIGEAYRITEKAKRYEQLGQLKDSVVAKLVE-EDDSIDSGEVGEIFHSI 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + +R IS+ TG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKDVVRSRIIAGEKRIDGRDPDMVRAISVATGVLPRTHGSSLFTRGETQALVTATLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID ++G+ T+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+++
Sbjct: 360 DAQMIDDIIGDKTNRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVQAVMPDHDA 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ +K V+LSD
Sbjct: 420 FPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEDDKFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG +GITALQMDIKI GIT +I++ AL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGNNDGITALQMDIKIDGITREIMEQALAQAKAARLHILTVMDEA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ELS +APR T+KI+ KI+DVIGKGG+ IR LTE T T I+I D+G I IA+
Sbjct: 540 IGGHRTELSAYAPRYHTMKINSDKIKDVIGKGGAVIRELTESTNTNIEIQDDGTIKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ A RIE+LT V++G++Y G V R+ DFGA + +L GKDGL+HISQI+ +RVN
Sbjct: 600 DQADADAAIARIEQLTADVEVGRIYQGKVARIVDFGAFVTVLPGKDGLVHISQIAEERVN 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++LK Q V VKVL ID +GRI+LSM
Sbjct: 660 DVNEYLKVGQTVAVKVLEIDRQGRIRLSM 688
>gi|410861616|ref|YP_006976850.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
AltDE1]
gi|410818878|gb|AFV85495.1| polynucleotide phosphorylase/polyadenylase [Alteromonas macleodii
AltDE1]
Length = 703
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/686 (53%), Positives = 496/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG + +++E G IARQAT++VL S++DT +L TVV K+ +FFPLTV+Y
Sbjct: 4 ITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EKAYAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFPEG+ NE+Q+VV V+S NP I
Sbjct: 64 EKAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVVTVMSANPDI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VG+ +G+YILN E+ +S LDL+VAGTE
Sbjct: 124 PTDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESELDLVVAGTEG 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+ +L A++FGHE+++ ++A+NE VG +K +W P ++ L
Sbjct: 184 AVLMVESEADVLSEETMLGAVMFGHEQLQTVVSAVNEFAAEVGTEKWDWAPEAENTALKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E ++ AYQI +K R +++ +++ E+ D ++ +L+DLES
Sbjct: 244 KVKALAEAEMTAAYQISDKLERKDAVTAVTEKALEAIL-AEDEEQDKKEVLDLLHDLESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILSGAPRIDGREPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G+ FMLHYN PP+ G+ G IG PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K + V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT +GITALQMDIKI GIT +I+QIAL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTDGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ELS+FAPR+ T+KID KIRDVIGKGG+ IR +TEE+ T I+I D+G I I +
Sbjct: 543 HREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKIFATERA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A +IE++T +++GK Y G + R+ DFGA + +L GK+GL+HISQI+ +RVN +T
Sbjct: 603 KADIAIGKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNKVT 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+LKE + V VKV+ ID + R++LS+
Sbjct: 663 DYLKEGEMVDVKVMEIDRQNRVRLSI 688
>gi|387127175|ref|YP_006295780.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM1]
gi|386274237|gb|AFI84135.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM1]
Length = 697
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/689 (52%), Positives = 499/689 (72%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+ ++G + +S+E G+IARQA S++ S+ +T +L TVV K+ +FFPLTV
Sbjct: 1 MNSVKKTVQFGEHILSLETGKIARQAGGSIIASLGETSVLVTVVGKKNVNPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE+ET+ SRLIDRP+RPLFP+G++NE+Q++ V++++
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPKGFINEVQVIATVMALD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+IDPDI ++IG S AL+IS +PF GPLG A+VGY+DG YILNP+ +QL S LDL+VAG
Sbjct: 121 PEIDPDIPAMIGASAALAISGIPFNGPLGAARVGYVDGNYILNPSKKQLAASSLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ +LPE+++L ++++GH++++ AI I+EL + W KD
Sbjct: 181 TESAVLMVESEASELPEEVMLGSVMYGHQQIQTAIKLIDELKAETAKTAWEWTAPEKDDR 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L + + + + I+ AY I +K R I + ++L+ +E+ +D+ + L
Sbjct: 241 LYNAVKDQAFEGIKNAYAISDKMQRQDQLAEIRQAAIAALV-SEDGEWSEDDVKGVFGKL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +++R +I+ RID R +RP+ + T +LPR HGS+LFTRG+TQA+VVATLG R
Sbjct: 300 EKELVRGRIIAGEPRIDGRDTKTVRPVFVETTVLPRVHGSALFTRGETQAIVVATLGAER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDA+ GE+ D FMLHYN PPF G+ G +G PKRREIGHG+LAKR + V+P+ +
Sbjct: 360 DAQMIDAVEGEYRDRFMLHYNFPPFCVGETGFVGTPKRREIGHGKLAKRGIQAVMPSAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+ + +L+D
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLIKEPDAYAVLTD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GI +I++ AL +A+ G +ILEKM
Sbjct: 480 ILGDEDHLGDMDFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRLHILEKMNAV 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S+FAPR+IT+KI KIRDVIGKGG+TIR +TEETG IDI D+G + I S
Sbjct: 540 ISTHRQEMSEFAPRIITVKIHADKIRDVIGKGGATIRAITEETGATIDIQDDGTVMIFSS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +GQ+A RIE++T V++GK+Y G V +L DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 DFNAGQDALHRIEQITAEVEVGKIYQGRVAKLMDFGAFVTILPGKDGLVHISQISDERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E + VKVL +D +GRI+LSM
Sbjct: 660 NVSDKLSEGDMIDVKVLEVDRQGRIRLSM 688
>gi|359448797|ref|ZP_09238311.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20480]
gi|358045367|dbj|GAA74560.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20480]
Length = 708
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/694 (54%), Positives = 498/694 (71%), Gaps = 8/694 (1%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G A+VGYI G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGAARVGYIGGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ L ED++L A+++GHE+ + INAINE G+ +W K+ +
Sbjct: 181 TDNAVLMVESEADVLAEDVMLGAVVYGHEQSQSIINAINEFKAEAGKPTWDWTAPEKNVS 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKD-----IYSSLIDNENLTIDINDINC 359
L K+ ++ K+ +AY+I +K R ++KD + S L + E T+D ++
Sbjct: 241 LEEKVAELAADKVGEAYRITDKVARKEAL-GVAKDAVIEALSSELAEGE--TLDKQEVGK 297
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+ LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV AT
Sbjct: 298 VFGSLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTAT 357
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+
Sbjct: 358 LGTERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVM 417
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ EK
Sbjct: 418 PTLTDFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKF 477
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
V+LSDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+QIAL +AK +IL+
Sbjct: 478 VVLSDILGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILK 537
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M + ELS FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I
Sbjct: 538 VMDEAISAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTI 597
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS
Sbjct: 598 KIAATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQIS 657
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 658 TERVNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|333893333|ref|YP_004467208.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2]
gi|332993351|gb|AEF03406.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. SN2]
Length = 703
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/686 (53%), Positives = 492/686 (71%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG + +++E G IARQAT++V+ S++DT +L TVV K+ + +FFPLTV+Y
Sbjct: 4 ITKSFQYGQHTVTLETGVIARQATAAVMASMDDTAVLVTVVGKKEAKADQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFPEG+ NE+Q+V+ V+S NP I
Sbjct: 64 EKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVITVMSANPDI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY DG+YILN E+ S LDL+VAGTE
Sbjct: 124 PTDIISMIGTSAALAISGIPFNGPIGAARVGYTDGEYILNTRVEEQADSDLDLVVAGTEG 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L ED++L A++FGHE+++ + A+ E NV K +W P ++ TL
Sbjct: 184 AVLMVESEADVLSEDVMLGAVMFGHEQLQTVVTAVKEFAANVSIDKWDWKPEAENTTLKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E ++ AYQI +K R ++ +++ E+ T D +++ +L+DLES
Sbjct: 244 KVKALAEAEMVAAYQISDKLARKDAVTAATEKARDAIL-AEDETQDKKEVSNLLHDLESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TGILPRTHGS++FTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGEPRIDGRDPKMIRALDVATGILPRTHGSAVFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G FMLHYN PP+ G+ G IG PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDELQGRRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K E V+LSDILG
Sbjct: 423 VVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTGGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAIGG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ELS+FAPR+ T+K+D KIRDVIGKGG+ IR++TEE+ T I+I D+G I I +
Sbjct: 543 HREELSEFAPRIYTVKVDQDKIRDVIGKGGAMIRSITEESDTNIEIEDDGTIKIFATERA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A +IE++T +++GK Y G + R+ DFGA + +L GK+GL+HISQI+ +RVN +T
Sbjct: 603 KADIAISKIEQVTAEIEVGKTYHGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNKVT 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L E + VKV+ ID + R++LS+
Sbjct: 663 DYLTEGAMIDVKVMEIDRQNRVRLSI 688
>gi|387129542|ref|YP_006292432.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM7]
gi|386270831|gb|AFJ01745.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM7]
Length = 699
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/689 (51%), Positives = 498/689 (72%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+ ++G + +S+E G+IARQA +V+ S+ +T +L TVV K+ +FFPLTV
Sbjct: 1 MNSVKKTVQFGEHLLSLETGKIARQAGGAVMASLGETAVLVTVVGKKNVNPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE+ET+ SRLIDRP+RPLFP+G++NE+Q++ V++++
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPKGFINEVQVIATVVAID 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P IDPDI ++IG S AL+IS +PF GPLG A+VGYI+G+Y+LNP+ QL +S LDL+VAG
Sbjct: 121 PAIDPDIPAMIGASAALAISGIPFNGPLGAARVGYINGQYVLNPSKSQLTESELDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+++LPE+++L +++FGH++M+ AIN + +L Q V + W KD
Sbjct: 181 TETAVLMVESEAQELPEEVMLGSVMFGHQQMQSAINLVRDLQQEVSKAAWEWQAEAKDDR 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L + + + I +AY + +K +R + + +L+ +E+ + ++ I L
Sbjct: 241 LYNAVKEAAYAGIGQAYTVSDKLLRQDQLAEVRQTAVDALV-SEDGEWNEEEVKAIFGKL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +++R +I+ RID R +RP+ + T +LPR HGS+LFTRG+TQA+VVATLG R
Sbjct: 300 EKELVRGRIIAGEPRIDGRDTKTVRPVFVETSVLPRVHGSALFTRGETQAIVVATLGAER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDA+ GE+ D FMLHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P
Sbjct: 360 DAQMIDAVEGEYRDRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPTAEA 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+ + +++D
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLIKEPDAYAVITD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GI +I++ AL +A+ G +IL+KM
Sbjct: 480 ILGDEDHLGDMDFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRLHILDKMNAV 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S+ APR+IT K+ KIRDVIGKGG+TIR +TEETG IDI D+G + I S
Sbjct: 540 ISTHRQEMSEHAPRIITTKVHADKIRDVIGKGGATIRAITEETGATIDIQDDGTVMIFSS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +GQ+A RIE++T V++GK+Y G V +L DFGA + IL GKDGL+HISQIS++RV
Sbjct: 600 DYNAGQDALHRIEQITADVEVGKIYQGRVAKLMDFGAFVTILPGKDGLVHISQISNERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E + VKVL +D +GRI+LSM
Sbjct: 660 NVSDKLSEGDMIEVKVLEVDRQGRIRLSM 688
>gi|429102986|ref|ZP_19164960.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
564]
gi|426289635|emb|CCJ91073.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
564]
Length = 677
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/658 (54%), Positives = 490/658 (74%), Gaps = 2/658 (0%)
Query: 98 IEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRL 157
++DT + TVV K +FFPLT++Y E+ YAAGRIPG FF+REG+PSE ET+I+RL
Sbjct: 1 MDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREGRPSEGETLIARL 60
Query: 158 IDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKV 217
IDRP+RPLFPEG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S +PF GP+G A+V
Sbjct: 61 IDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARV 120
Query: 218 GYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKI 277
GYI+ +Y+LNPT E+LK S LDL+VAGTE A++ VESE++ L ED +L A++FGHE+ ++
Sbjct: 121 GYINDQYVLNPTQEELKASKLDLVVAGTESAVLMVESEAELLSEDQMLGAVVFGHEQQQV 180
Query: 278 AINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNIS 337
I IN+LV+ G+ + +W P ++ L + ++E ++ AY+I +KQ R I
Sbjct: 181 VIQNINDLVKEAGKPRWDWQPEAANEALNAATGALAESRLSDAYRITDKQERYSQIDAIK 240
Query: 338 KDIYSSLI--DNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRT 395
D+ ++L E +D N++ IL+ +E ++R ++L RID R + IR + +RT
Sbjct: 241 ADVIAALQAEQAEGDALDENELGDILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRT 300
Query: 396 GILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIG 455
G+LPRTHGS+LFTRG+TQALV ATLGT RD Q ID LMGE TD F+ HYN PP++ G+ G
Sbjct: 301 GVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGERTDRFLFHYNFPPYSVGETG 360
Query: 456 RIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALL 515
+G PKRREIGHGRLAKR +L V+P ++F Y++R+VSEITESNGSSSMASVCG LAL+
Sbjct: 361 MVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALM 420
Query: 516 DAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKI 575
DAGVPI VAGIAMGL+K+GE V+LSDILGDED GDMDFKVAG+ GITALQMDIKI
Sbjct: 421 DAGVPIKAAVAGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKI 480
Query: 576 FGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGK 635
GIT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ TIKI P KI+DVIGK
Sbjct: 481 EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGK 540
Query: 636 GGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLR 695
GGS IR LTEETGT I+I D+G + IA+ + + A RRIE++T +++G++Y G V R
Sbjct: 541 GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTR 600
Query: 696 LFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 601 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 658
>gi|381151075|ref|ZP_09862944.1| polyribonucleotide nucleotidyltransferase [Methylomicrobium album
BG8]
gi|380883047|gb|EIC28924.1| polyribonucleotide nucleotidyltransferase [Methylomicrobium album
BG8]
Length = 693
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/689 (56%), Positives = 504/689 (73%), Gaps = 3/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K F+YG +++E GEIARQA +V++ +E T +L TVVS KD T +FFPLTV
Sbjct: 1 MNPIRKEFQYGDRTVTLETGEIARQAHGAVIIDVEGTSLLVTVVSKKD-TGGNDFFPLTV 59
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK+YAAG+IPG FFKREG+PSE+ET+ISRLIDRPIRPLFPEGY +E+QI+ V+S+N
Sbjct: 60 NYQEKSYAAGKIPGGFFKREGRPSEQETLISRLIDRPIRPLFPEGYTDEVQIIATVISLN 119
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P++D +I +++G S AL++S LPF GP+G A VG+ DG+Y+LNP LK S L L+VAG
Sbjct: 120 PEVDTEIPALLGASAALAVSGLPFNGPVGAACVGFKDGQYLLNPAPAALKDSRLQLVVAG 179
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ L ED +L A++FGHE+M+ AINAIN G V W D
Sbjct: 180 TANAVLMVESEADGLTEDEMLGAVLFGHEQMQTAINAINAFAAAAGAGVVEWTAPDADAE 239
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L+ + E I++AY+I K +R K I T N I I+ +L
Sbjct: 240 LVRLVTAEVEEGIQEAYRIAEKLVRQDRLKVIRTAAIEKFTALGEYTE--NAIRHIIENL 297
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E I+R+ IL + RID R ++ +RPI+IRTG+LPRTHGS+LFTRG+TQALVVATLGT R
Sbjct: 298 EYNIVRQAILSEKRRIDGRTLDSVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTQR 357
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDAL GE+ + FMLHYN PPF+ G+ G +G PKRREIGHGRLAKR +L VLP +
Sbjct: 358 DAQIIDALTGEYKELFMLHYNFPPFSVGETGFVGSPKRREIGHGRLAKRGVLAVLPVMEE 417
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+G+ +LSD
Sbjct: 418 FPYVIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLIKEGDDYAVLSD 477
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
I+GDED GDMDFKVAGT +GITALQMDIKI GIT +I++ AL +AK G +IL +M
Sbjct: 478 IMGDEDHLGDMDFKVAGTADGITALQMDIKIDGITAEIMKTALAQAKTGRIHILGEMNKV 537
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+P + +S +APR+IT KIDPSKIR+VIGKGG+TIR +TE TG +D+ D+G++ IAS
Sbjct: 538 LPAAREHMSDYAPRIITFKIDPSKIREVIGKGGATIRGITEITGASVDLTDDGVVKIASV 597
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +G+EA+R IE++T V++GK+Y G V+RL DFGA + IL GKDGL+HISQIS++ V+
Sbjct: 598 DKAAGEEARRLIEEITAEVEVGKIYEGKVVRLMDFGAFVTILPGKDGLVHISQISNEHVD 657
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E VRVKVL ID +GR++LSM
Sbjct: 658 KVSDKLSEGDVVRVKVLEIDRQGRVRLSM 686
>gi|414072331|ref|ZP_11408277.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
Bsw20308]
gi|410805243|gb|EKS11263.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
Bsw20308]
Length = 708
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/691 (54%), Positives = 492/691 (71%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VLVSI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLVSIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G A+VGYI+G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGAARVGYINGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L ED++L A+++GHE+ + I AI E G+ +W K+
Sbjct: 181 TDKAVLMVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEFKAQAGKPTWDWTAPEKNVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L K+ I+ K+ AY I +K R ++ + L E ++D +I I
Sbjct: 241 LEDKVATIAADKVGAAYLITDKVARKEALGEAKDEVVAVLTAELAEGESLDKQEIGKIFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGISAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ EK V+L
Sbjct: 421 TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDEKFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +ILE M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I IA
Sbjct: 541 EAISAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS++R
Sbjct: 601 ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|257096736|sp|B6ENE6.2|PNP_ALISL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 709
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/691 (51%), Positives = 507/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++KSF+YG++ +++E G +ARQAT++V+ S++DT + +VV+ K+ + +FFPL
Sbjct: 1 MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVAKKEAVAGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+NP ++PD+ ++I S ALSI+ +PF GP+G A+VG+I+G+ +LNP+ +L S LDL+V
Sbjct: 121 INPDVNPDMITMIATSAALSIAGVPFNGPIGAARVGHINGELVLNPSNTELANSKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
+GTE A++ VESE+ L E+ +L+A++FGH++ ++ I AINE V NW+ V +
Sbjct: 181 SGTEAAVLMVESEADNLSEEEMLSAVVFGHDQQQVVIKAINEFAAEVATPSWNWEAPVVN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +++ ++E ++ +AYQI K R I ++ ++L+ +N +D +I +L
Sbjct: 241 AELKAQVAELAETRLSEAYQITEKMARYEQVGAIKSEVVAALL-VQNEALDEREIRGMLG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE ++R +I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 ALEKNVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID+LMGE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILTVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S++APR+ T+KI KI+DVIGKGG+ IR L EETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISQYAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRIE++T V++GK+Y G V+R+ DFGA + +L K+GL+HISQI+ +R
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGKIYPGKVMRIVDFGAFVTVLGPKEGLVHISQIAEER 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + D L+ Q+V+ KVL ID +GRI+LS+
Sbjct: 660 IEKVADHLQVGQEVQTKVLEIDRQGRIRLSI 690
>gi|359431822|ref|ZP_09222233.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20652]
gi|357921524|dbj|GAA58482.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20652]
Length = 704
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/694 (54%), Positives = 496/694 (71%), Gaps = 8/694 (1%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK FK G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFKLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G ++VGYI+G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L ED++L A+++GHE+ + I AI E G+ +W K+
Sbjct: 181 TDKAVLMVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEFKAEAGKPTWDWTAPAKNVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKD-----IYSSLIDNENLTIDINDINC 359
L K+ I+ K+ AY I +K R ++KD + + L + E+L D +I+
Sbjct: 241 LEDKVAAIAADKVGAAYLITDKVARKEAL-GVAKDEVVAVLTAELAEGESL--DKQEISK 297
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV AT
Sbjct: 298 IFGSLEKKIVRGRIASGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTAT 357
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+
Sbjct: 358 LGTERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVM 417
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P +F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ +K
Sbjct: 418 PTLTEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKF 477
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
V+LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +ILE
Sbjct: 478 VVLSDILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILE 537
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M + ELS FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I
Sbjct: 538 VMDEAISAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTI 597
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS
Sbjct: 598 KIAATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQIS 657
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 658 TERVNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|359452962|ref|ZP_09242293.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20495]
gi|358049954|dbj|GAA78542.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20495]
Length = 708
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/691 (54%), Positives = 492/691 (71%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VLVSI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLVSIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G A+VGYI+G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGAARVGYINGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L ED++L A+++GHE+ + I AI E G+ +W K+
Sbjct: 181 TDKAVLMVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEFKAQAGKPTWDWTAPEKNVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L K+ I+ K+ AY I +K R ++ + L E ++D +I I
Sbjct: 241 LEDKVATIAADKVGAAYLITDKVARKEALGEAKDEVVAVLTAELAEGESLDKQEIGKIFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGISAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ +K V+L
Sbjct: 421 TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +ILE M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I IA
Sbjct: 541 EAISAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS++R
Sbjct: 601 ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|348029478|ref|YP_004872164.1| polynucleotide phosphorylase [Glaciecola nitratireducens FR1064]
gi|347946821|gb|AEP30171.1| polynucleotide phosphorylase/polyadenylase [Glaciecola
nitratireducens FR1064]
Length = 704
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/686 (53%), Positives = 496/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F+YG + +++E G IARQAT++V+ S++DT +L +VV K+ + FFPLTV+Y
Sbjct: 4 ITKTFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKETKADQGFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EKAYAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP + NE+QI++ V+S NP+I
Sbjct: 64 EKAYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNDFKNEVQIIITVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY DG YILN + ++S LDL+VAGT+
Sbjct: 124 PTDIISLIGTSAALAISGMPFSGPVGAARVGYKDGGYILNTRASEQEESQLDLVVAGTKS 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L ED++L A+++GHE+ + INAI E VG + W ++ L +
Sbjct: 184 AVLMVESEADILSEDVMLGAVMYGHEQSQTVINAITEFAAEVGTESWGWTAPAENTELKA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E + +AYQI +K +R ++ ++++ N D + + +L+DLES
Sbjct: 244 KVKELAEAGMTEAYQISDKMVRKDAITAVTSKALETILEA-NPAQDPKEASDLLHDLESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R + IR +++ TG+LPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGEKRIDGRDPDTIRALNVATGLLPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
+D L G T FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MLDQLGGMATSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMQAVMPSAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT NGITALQMDIKI GIT++I+Q+AL +AK+ +ILE M + +
Sbjct: 483 DEDHLGDMDFKVAGTTNGITALQMDIKIEGITHEIMQLALKQAKEARLHILEVMDSAISG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S++APR+ T+K+D KIRDVIGKGG+ IR++TE + T I+I D+G I I +
Sbjct: 543 HREEMSEYAPRIYTMKVDQDKIRDVIGKGGAMIRSITEASDTNIEIEDDGTIKIFATEKA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A RI+ +T +++G VY G V+R+ DFGA + +L GK+GL+HISQI+ RVN +T
Sbjct: 603 KADIAIDRIKAVTAEIEVGTVYNGKVMRIVDFGAFVEVLPGKEGLVHISQIAHDRVNKVT 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
DFL+E Q V VKV+ ID + RI+LS+
Sbjct: 663 DFLEEGQMVDVKVMEIDRQNRIRLSI 688
>gi|359442879|ref|ZP_09232735.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20429]
gi|392535264|ref|ZP_10282401.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
arctica A 37-1-2]
gi|358035239|dbj|GAA68984.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20429]
Length = 708
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/694 (54%), Positives = 495/694 (71%), Gaps = 8/694 (1%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK FK G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFKLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G ++VGYI+G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L ED++L A+++GHE+ + I AI E G+ +W K+
Sbjct: 181 TDKAVLMVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEFKAEAGKPTWDWTAPAKNVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKD-----IYSSLIDNENLTIDINDINC 359
L K+ I+ K+ AY I +K R ++KD + + L + E+L D +I
Sbjct: 241 LEDKVAAIAADKVGAAYLITDKVARKEAL-GVAKDEVVAVLTAELAEGESL--DKQEIGK 297
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV AT
Sbjct: 298 IFGSLEKKIVRGRIASGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTAT 357
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+
Sbjct: 358 LGTERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVM 417
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P +F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ +K
Sbjct: 418 PTLTEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKF 477
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
V+LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +ILE
Sbjct: 478 VVLSDILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILE 537
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M + ELS FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I
Sbjct: 538 VMDEAISAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTI 597
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS
Sbjct: 598 KIAATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQIS 657
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++RVN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 658 TERVNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|359439073|ref|ZP_09229053.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20311]
gi|359446456|ref|ZP_09236129.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20439]
gi|358026307|dbj|GAA65302.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20311]
gi|358039713|dbj|GAA72378.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20439]
Length = 708
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/691 (53%), Positives = 492/691 (71%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G ++VGYI+G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ L ED++L A+++GHE+ + INAINE G+ +W K+
Sbjct: 181 TDNAVLMVESEADVLAEDVMLGAVVYGHEQSQSIINAINEFKAEAGKPTWDWTAPEKNVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L K+ ++ K+ +AY+I +K R + +L E T+D ++ +
Sbjct: 241 LEEKVATLAADKVGEAYRITDKVARKEALTAAKDAVVEALTSELAEGETLDKQEVGKVFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ E V+L
Sbjct: 421 TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEEENFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILGVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS FAPR+ T++I KI +VIGKGG+TIR LTEETGT I+I D+G I IA
Sbjct: 541 EAISAPSEELSMFAPRIYTMQIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS++R
Sbjct: 601 ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|410637104|ref|ZP_11347692.1| polyribonucleotide nucleotidyltransferase [Glaciecola lipolytica
E3]
gi|410143483|dbj|GAC14897.1| polyribonucleotide nucleotidyltransferase [Glaciecola lipolytica
E3]
Length = 703
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/686 (53%), Positives = 499/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F+YG + +++E G IARQAT++V+ S++DT +L +VV KD + +FFPLTV+Y
Sbjct: 4 ITKTFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDVKADQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EKAYAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G++NE+QI++ V+S NP+I
Sbjct: 64 EKAYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPDGFMNEVQIIITVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY +G+YILN T +L+ S LDL+VAGTE
Sbjct: 124 PTDIISLIGTSAALAISGIPFNGPVGAARVGYKEGEYILNTLTSELETSELDLVVAGTES 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+++L A+++GHE+ + +NA+ E +V +W + ++ L +
Sbjct: 184 AVLMVESEASILSEEVMLGAVMYGHEQSQAVVNAVREFAADVATPSWDWQAVAENTALKA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E + +AYQI +K +R +++ +++++ + D +++ +L+DLES
Sbjct: 244 KVKELAEAGMTEAYQISDKMVRKDAVVAVTEKAVAAILEADPEQ-DAKEVSEMLHDLESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R + IR + + TGILPRTHGS+LFTRG+TQALV ATLGT RD Q
Sbjct: 303 VVRSRILAGEPRIDGREPDMIRALHVNTGILPRTHGSALFTRGETQALVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G + FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P +F Y
Sbjct: 363 MIDELGGMASSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPTEAEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+Q AL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTQGITALQMDIKIEGITKEIMQKALKQAKEARLHILGVMDEALGG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S+FAPR+ T+KID KIRDVIGKGG+ IR +TEE+ T I+I D+G I I +
Sbjct: 543 HRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRAITEESDTNIEIEDDGTIKIFATELA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ A +IE++T V+ GK Y G V R+ DFGA + +L GK+GL+HISQI+ +RVN +
Sbjct: 603 KAEIAIAKIEQVTAEVEAGKTYHGKVTRIVDFGAFVEVLPGKEGLVHISQIAHERVNKTS 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L E Q V VKV+ ID + R++LS+
Sbjct: 663 DYLSEGQMVDVKVMEIDRQNRVRLSI 688
>gi|88860552|ref|ZP_01135190.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
gi|88817750|gb|EAR27567.1| polynucleotide phosphorylase [Pseudoalteromonas tunicata D2]
Length = 709
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/691 (54%), Positives = 497/691 (71%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA ++VL SI DT +L TVV K+ +FFPLTV
Sbjct: 1 MQAIIKKFQLGQHTVTLETGAIARQADAAVLASIGDTSVLITVVGKKEAAPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+PS+ ET+I+RLIDRPIRPLFP+G++NE+Q++ V+S N
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPSDAETLIARLIDRPIRPLFPDGFVNEVQVIATVVSFN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PDI ++IG S AL+IS +PF GP+G ++VGYI+G+Y+LNP+ ++L++S LDL+VAG
Sbjct: 121 PEIQPDIVTLIGTSAALAISGIPFNGPVGASRVGYINGQYVLNPSVKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ L ED++L A+++GHE+M+ I A+ E G+ NW K+
Sbjct: 181 TENAVLMVESEANILSEDVMLGAVMYGHEQMQSIITAVAEFKAEAGKPTWNWSAPEKNVD 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L ++I NI+E KI AY I +K R ++ +L E ++D N++ +
Sbjct: 241 LATQIANIAEAKIGAAYLITDKVARKDALSAAKAEVVETLTAQLAEGESLDKNEVGDLFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE I+R +I+ RID R + IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKTIVRGRIIAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q +DAL G FMLHYN PPF G+ G +G PKRREIGHG LAKR + V+P+
Sbjct: 361 ERDSQMLDALSGTSNSRFMLHYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPSL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YSIR+VSEITESNGSSSMASVCG LAL++AGVP+ VAGIAMGL+K+ E V+L
Sbjct: 421 TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPVKASVAGIAMGLVKENENFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTSNGITALQMDIKIEGITREIMQIALNQAKAARLHILGVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ELS+FAPR+ T+ I P KI +VIGKGG+TIR LTEETGT I+I D+G I IA
Sbjct: 541 QAISAPQAELSEFAPRIYTMNIPPKKIAEVIGKGGATIRALTEETGTTIEIEDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ N S + A RIE+LT +++G +YTG V+RL DFGA + +L GKDGL+HISQI +R
Sbjct: 601 ATNGDSAKAAIARIEQLTAELEVGTIYTGKVVRLVDFGAFVNVLPGKDGLVHISQICEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D L Q+V+VKV+ +D +GR++LS+
Sbjct: 661 VNNVADHLSIGQEVKVKVVEVDRQGRVRLSI 691
>gi|146329836|ref|YP_001209934.1| polynucleotide phosphorylase/polyadenylase [Dichelobacter nodosus
VCS1703A]
gi|187610297|sp|A5EXU0.1|PNP_DICNV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146233306|gb|ABQ14284.1| polyribonucleotide nucleotidyltransferase [Dichelobacter nodosus
VCS1703A]
Length = 693
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/684 (54%), Positives = 496/684 (72%), Gaps = 1/684 (0%)
Query: 71 SFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKA 130
SF YG +++++E GEIARQA +V+V+++DT++L TVV+ K +FFPLTVDY EK
Sbjct: 6 SFTYGQHQVTLETGEIARQADGAVIVNMDDTIVLVTVVANKTVAEGQDFFPLTVDYQEKN 65
Query: 131 YAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPD 190
YAAG+IPG FFKREG+PSE ET+ISRLIDRPIRPLF +G+LNE+QI+ VLS NP++ PD
Sbjct: 66 YAAGKIPGGFFKREGRPSEEETLISRLIDRPIRPLFADGFLNEVQIIATVLSYNPEVSPD 125
Query: 191 IASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAII 250
I SIIG S AL +S LPF GP+ A+VGY++ Y+LNP+ + LK S LDL+VAGTE A++
Sbjct: 126 IPSIIGASAALKLSGLPFNGPIAAARVGYVNDAYVLNPSPKALKNSRLDLVVAGTESAVL 185
Query: 251 TVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKII 310
VESE+ QL E ++L A++FGH + ++ I +INEL + W +D+ L +++
Sbjct: 186 MVESEADQLSEAVMLEAVMFGHRQQQVVIKSINELAAQAAKPAWAWQSPARDEQLDTEVK 245
Query: 311 NISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYDLESKII 369
N E ++ AYQI +KQ R T I D + L I N + +N ++ L +I+
Sbjct: 246 NHFEERLVAAYQIAHKQTRQETVAQIHADAVALLGIQNNAHGWEETLVNEYVHHLAYRIV 305
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R +IL K RID R +RPI+I T +LPR HGS+LFTRG+TQALVVATLGT RD Q +
Sbjct: 306 RDRILKKQPRIDGRDTKTVRPITIHTSVLPRAHGSALFTRGETQALVVATLGTGRDAQLL 365
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D L GE D+FMLHYN PF+ G+IGRIG PKRREIGHGRLA+R L VLP F Y+I
Sbjct: 366 DTLDGEVRDNFMLHYNFLPFSVGEIGRIGSPKRREIGHGRLARRGLSAVLPLEEDFPYTI 425
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGLIK+G++ IL+DILGDE
Sbjct: 426 RVVSEITESNGSSSMASVCGSSLALMDAGVPVQTPVAGIAMGLIKEGDEFAILTDILGDE 485
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAG+ G+TALQMDIKI GIT +I++ AL +A +G +ILE M + +
Sbjct: 486 DHLGDMDFKVAGSATGVTALQMDIKINGITEEIMRQALSQAHEGRLHILEVMNQAIAAPR 545
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS +APR +++ID KI+DVIGKGG+TIR++TE+TGT I+I D+G + IA+ + +
Sbjct: 546 AELSDYAPRFSSMRIDTEKIKDVIGKGGATIRSITEQTGTTIEIEDDGSVKIAATDKAAA 605
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
A+R IE++ +IG++Y V ++ DFGA ++ L GK+GL+HISQI+ RVN + D
Sbjct: 606 ANARRLIEEIVAEPEIGRIYDAKVTKITDFGAFLQFLPGKEGLVHISQIADYRVNDVRDE 665
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
L E Q+V+VK+L ID +GR++LS+
Sbjct: 666 LTEGQEVKVKLLEIDRQGRVRLSI 689
>gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
vafer str. BVAF]
gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
vafer str. BVAF]
Length = 697
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/691 (54%), Positives = 501/691 (72%), Gaps = 2/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I F+YG + I ++ G IARQA +SV+VS++DT +L TVV +FFPL
Sbjct: 1 MINSTIYKFQYGKHTIILDTGTIARQANASVMVSMDDTTVLVTVVGSDQVKIDQDFFPLV 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAG+ PG FF+REG+PSE E + +RLIDRPIRPLFP+G+ N++QI+ V+SV
Sbjct: 61 VNYQERTYAAGKFPGGFFRREGRPSESEILTARLIDRPIRPLFPKGFYNDVQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI PDI +IIG S ALS+S++PFLGP+GVA+VGYI+ +Y+LNPT +L S LDL+++
Sbjct: 121 NPQISPDIVAIIGASAALSLSDIPFLGPIGVARVGYINNQYVLNPTISELANSKLDLVIS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE I+ VESES L E ILNAIIFGHE+ +I I+ IN+LVQ +G+ K W D
Sbjct: 181 GTESNILMVESESSLLSEKEILNAIIFGHEQQQIVIHNINKLVQEIGKSKFIWKRKELDL 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYS-SLIDNENLTIDINDINCILY 362
+L + ++ E ++ +++++ R + NI +D+ S I N T++ N+I L
Sbjct: 241 SLQKYLSDLYESRLNCISIVRDRKGRQIQLNNIKQDVIDFSCIKYSN-TMNGNEIMYFLN 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE +++R+ IL LR+D R + IR I I+ G+LPRTHGS+LFTRG+TQALV TLGT
Sbjct: 300 YLEVQLLRQYILKNNLRLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAVTLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
R+ Q +D L G+ D F++HYN P+ G+IG +G PKRREIGHGRLAKR +L V+P++
Sbjct: 360 ERNAQNLDELTGDRVDRFLMHYNFNPYCVGEIGIVGAPKRREIGHGRLAKRGMLAVMPDS 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
N+F Y+IR+VSEITESNGSSSMAS+CG LAL+DAGVPI E VAG+AMGLIK+ + V+L
Sbjct: 420 NEFPYTIRVVSEITESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKEENEFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDI+ DED GDMDFKVAG GITALQMDIKI GITY+II +AL K+K IL M+
Sbjct: 480 SDIISDEDHIGDMDFKVAGGKQGITALQMDIKINGITYEIIHVALEKSKLARLKILNFME 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +S+FAPR+ IKI+P KI+DVIGKGGS IR LTEET T IDI D+G+I I
Sbjct: 540 QVIKIPRKNISEFAPRIYNIKINPDKIKDVIGKGGSVIRALTEETNTIIDIEDDGLIKIV 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
S N+ ++A RI+++T ++ IG VYTG V + +FGA I I SGK+GLLHISQIS KR
Sbjct: 600 SLNAEKAKQAMSRIQEITANIAIGSVYTGKVTHIVEFGAFITIFSGKEGLLHISQISEKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++D+LK Q+V VKVL ID +GRI+LSM
Sbjct: 660 IGKVSDYLKLGQEVLVKVLDIDRQGRIRLSM 690
>gi|332532415|ref|ZP_08408293.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038058|gb|EGI74505.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 708
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/691 (53%), Positives = 491/691 (71%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK FK G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFKLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G ++VGYI+G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+ L ED++L A+++GHE+ + I AI E G+ +W K+
Sbjct: 181 TDKAVLMVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEFKAQAGKPTWDWTAPEKNVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L K+ I+ K+ AY I +K R ++ + L E ++D +I I
Sbjct: 241 LEDKVATIAAEKVGAAYLITDKVARKEALGEAKDEVVAVLTAELAEGESLDKQEIGKIFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGISAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ +K V+L
Sbjct: 421 TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +ILE M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I IA
Sbjct: 541 EAISAPSEELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS++R
Sbjct: 601 ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|335043383|ref|ZP_08536410.1| polyribonucleotide nucleotidyltransferase [Methylophaga
aminisulfidivorans MP]
gi|333789997|gb|EGL55879.1| polyribonucleotide nucleotidyltransferase [Methylophaga
aminisulfidivorans MP]
Length = 699
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/689 (52%), Positives = 495/689 (71%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+ +YG + +S+E G+IARQA +V+ S+ +T +L TVV K+ +FFPLTV
Sbjct: 1 MNSVKKTVQYGQHTLSLETGKIARQAGGAVIASLGETAVLVTVVGKKEVKPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+AY+AG+IPG FFKREG+P+E+ET+ SRLIDRP+RPLFP G++NE+Q+V V+ ++
Sbjct: 61 NYQERAYSAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPNGFINEVQVVATVIGLD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+IDPDI ++IG S AL+IS +PF GPLG A+VGYIDG Y+LNP QL S LDL+VAG
Sbjct: 121 PEIDPDIPAMIGASAALAISGIPFNGPLGAARVGYIDGAYVLNPNKSQLDNSALDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ +LPE+++L +++FGH++M+ A++ I L G+ +W KD+T
Sbjct: 181 TESAVLMVESEASELPEEVMLGSVMFGHQQMQTAMDLIKALQAEAGKPAWDWTAPEKDET 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L + + + I+ AY I +K R + +L+ +E+ + + + L
Sbjct: 241 LYNMVKEQAYAGIQAAYAISDKLARLDELSKVRNAAVEALVSDESEYDEEE-VKGVFSKL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +++R +I+ RID R +RPI + TG++PR HGS+LFTRG+TQA+V+ATLG R
Sbjct: 300 EKELVRGRIIAGEPRIDGRDTASVRPIFVETGLVPRVHGSALFTRGETQAIVIATLGAER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDA+ GE+ D FMLHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P +
Sbjct: 360 DAQTIDAVEGEYRDRFMLHYNFPPYCVGETGMVGSPKRREIGHGKLAKRGVQAVMPTAAE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+ +L+D
Sbjct: 420 FPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLIKEENGYAVLTD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT G+TALQMDIKI GI +I++ AL +A+ G +IL KM
Sbjct: 480 ILGDEDHLGDMDFKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRMHILTKMNAV 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + E+S+FAPR+ITIKI+ KIRDVIGKGG+TIR +TEETG IDI D+G + I S
Sbjct: 540 ISSHRTEMSEFAPRIITIKINADKIRDVIGKGGATIRAITEETGATIDIQDDGTVMIFSS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ +GQ+A RR+E +T V++GK+Y G V +L DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 DYNAGQQALRRVEDITAEVEVGKIYEGRVAKLMDFGAFVTILPGKDGLVHISQISEERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E ++VKVL +D +GRI+LSM
Sbjct: 660 NVSDKLSEGDLIQVKVLEVDRQGRIRLSM 688
>gi|365921316|ref|ZP_09445602.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium valvarum
F0432]
gi|364576402|gb|EHM53729.1| polyribonucleotide nucleotidyltransferase [Cardiobacterium valvarum
F0432]
Length = 661
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/653 (54%), Positives = 489/653 (74%), Gaps = 2/653 (0%)
Query: 101 TVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDR 160
TV+L T V+ K +FFPLTVDY EK+YAAGRIPG +F+REG+PSE ET++SRLIDR
Sbjct: 4 TVVLVTAVAKKTVAEGQDFFPLTVDYQEKSYAAGRIPGGYFRREGRPSENETLVSRLIDR 63
Query: 161 PIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI 220
P+RPLFPEG+ NE+Q++ V+SVNP ++PDI S+IG S AL++S +PF GP+G A+VGY
Sbjct: 64 PLRPLFPEGFFNEVQVIASVMSVNPDVNPDIPSMIGASAALTLSGVPFNGPIGAARVGYK 123
Query: 221 DGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAIN 280
+G Y+LNP+ ++L S LDL+VAGTE A++ VES++ +L E+I+L A++FGHE+M+ AIN
Sbjct: 124 NGNYLLNPSDKELLDSDLDLVVAGTESAVLMVESQANELSEEIMLGAVMFGHEQMQTAIN 183
Query: 281 AINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDI 340
AI EL G+ +W +D+TL ++ ++ K+ AYQI +K R T I ++
Sbjct: 184 AIRELAAKAGKPAWDWQAEPQDETLHDRVRELARDKLIAAYQIADKLERQNTVATIHEEA 243
Query: 341 YSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPR 400
++L+ T+ + + +++LE +++R +IL K RID R +RPI+IRTG+LPR
Sbjct: 244 QTALVSENGWTV--SAVGNAVHELEYRVVRDRILAKEPRIDGRDTVTVRPITIRTGVLPR 301
Query: 401 THGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVP 460
HGS+LFTRG+TQALVV TLGTSRD Q IDAL GE+ D FMLHYN PPF+ G++GR+G P
Sbjct: 302 VHGSALFTRGETQALVVTTLGTSRDAQIIDALTGEYRDIFMLHYNFPPFSVGEVGRVGSP 361
Query: 461 KRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVP 520
KRREIGHGRLA+R + +LP + F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP
Sbjct: 362 KRREIGHGRLARRGVTAILPKESDFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVP 421
Query: 521 ISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITY 580
+ VAGIAMGL+K+G++ +L+DILGDED GDMDFKVAG+VNG+TALQMDIKI GIT
Sbjct: 422 VKTPVAGIAMGLVKEGDRFTVLTDILGDEDHLGDMDFKVAGSVNGVTALQMDIKIDGITR 481
Query: 581 DIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTI 640
+I++ AL +AK G +ILE M + + E+S+FAPR T++ID KI+DVIGKGG+TI
Sbjct: 482 EIMEQALTQAKAGRLHILEVMNQAIAAPRAEISEFAPRFTTLRIDVEKIKDVIGKGGATI 541
Query: 641 RTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFG 700
R++TE TGT I+I D+G I IA+ + + +A+R IE++T +IG+VY V+++ DFG
Sbjct: 542 RSITESTGTTIEIEDDGTIKIAAVDKTAADDARRIIEEITTEPEIGRVYDAKVVKITDFG 601
Query: 701 AIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
A + L GK+GL+H+SQI+ RV + D L Q+V+VK+L ID +GR++LS+
Sbjct: 602 AFVAFLPGKEGLVHVSQIADYRVTNVEDELSVGQEVKVKLLEIDRQGRVRLSI 654
>gi|392556468|ref|ZP_10303605.1| polynucleotide phosphorylase [Pseudoalteromonas undina NCIMB 2128]
Length = 708
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/691 (53%), Positives = 491/691 (71%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G ++VGYI+G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ L ED++L A+++GHE+ + INAINE G+ +W K+
Sbjct: 181 TDNAVLMVESEADVLAEDVMLGAVVYGHEQSQSIINAINEFKAEAGKPTWDWTAPEKNVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L K+ ++ K+ +AY+I +K R + +L E T+D ++ +
Sbjct: 241 LEEKVATLAADKVGEAYRITDKVARKEALTAAKDAVVEALTSELAEGETLDKQEVGKVFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ E V+L
Sbjct: 421 TDFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEEENFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILNVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS FAPR+ T++I KI +VIGKGG+TIR LTEETGT I+I D+G I IA
Sbjct: 541 EAISAPSEELSMFAPRIYTMQIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS++R
Sbjct: 601 ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|238897558|ref|YP_002923237.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|259534133|sp|C4K3E6.1|PNP_HAMD5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229465315|gb|ACQ67089.1| polynucleotide phosphorylase/polyadenylase [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 716
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/690 (53%), Positives = 503/690 (72%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F I F YG K++IE G +ARQAT++V+V IE T +L TVV+ K+ FFPL+
Sbjct: 1 MFTPTICRFDYGQLKVTIETGMMARQATAAVMVIIEGTAVLVTVVAQKEAKPGQTFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y E++YA GRIP +FF+RE +P+E ET+ SRLIDRPIRPLFP+ +LNE+Q++ V+SV
Sbjct: 61 VHYQERSYAVGRIPSNFFRRETRPNEGETLTSRLIDRPIRPLFPKDFLNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+++PDI ++IG S LS+S +PF P+G A+VG+I+G Y+LNPT E+LK+S L+L+VA
Sbjct: 121 NPKVNPDIVAMIGASAVLSLSGIPFHEPIGAARVGFINGAYVLNPTPEELKQSDLNLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L E+ +L AIIFGHE+ +I I +IN+LV+ G+ K + P + D+
Sbjct: 181 GTKNAVLMVESEANILTEEQMLGAIIFGHEQQQIVIESINDLVKKAGKLKWPFTPKIVDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L S I + + AY I +KQ R I +I ++ EN T++ I ILY+
Sbjct: 241 KLRSCITEEDKKDLSNAYLITDKQERYAKLNEIKTNIIERIL-KENETVNAEQIQDILYN 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
E ++R++IL RID R + IR + TGILPRTHGS+LFTRG+TQALV TLGTS
Sbjct: 300 FEKNLVRQRILKDEPRIDGRDKDMIRALHACTGILPRTHGSALFTRGETQALVTTTLGTS 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID LMGE +DSF+ HYN PP++ G+ G +G PKRREIGH RLAKRAL+ V+PN
Sbjct: 360 RDLQTIDDLMGERSDSFLFHYNFPPYSVGETGMLGSPKRREIGHARLAKRALMAVMPNIE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ +K V+LS
Sbjct: 420 EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEEDKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMD+KI GIT +I+Q AL+ AK +IL M
Sbjct: 480 DILGDEDHLGDMDFKVAGTSEGITALQMDMKIQGITPEIMQSALHHAKAARLHILSVMNQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + +S++AP + IKI+P KI+DVIGKGG+ IR L++ET T+IDI+D+G ITIA+
Sbjct: 540 VISSASSTISQYAPHIYNIKINPEKIKDVIGKGGAVIRALSDETDTKIDISDDGNITIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ S A++RIE++T ++++G++Y G V R+ D+GA + I S K+GL+HISQI+ RV
Sbjct: 600 LSQKSAAFAQQRIEEITANIEVGRIYQGTVTRIADYGAFVSIASAKEGLVHISQIAEGRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LK Q+V VKVL ID +GRI+LS+
Sbjct: 660 EKVTDHLKLKQQVSVKVLEIDRQGRIRLSI 689
>gi|420553973|ref|ZP_15051189.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-02]
gi|420564958|ref|ZP_15060894.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-04]
gi|420575662|ref|ZP_15070595.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-06]
gi|420580954|ref|ZP_15075407.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-07]
gi|420586342|ref|ZP_15080286.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-08]
gi|420602515|ref|ZP_15094768.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-11]
gi|420613309|ref|ZP_15104496.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-13]
gi|420618679|ref|ZP_15109179.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-14]
gi|420623988|ref|ZP_15113961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-15]
gi|420634192|ref|ZP_15123163.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-19]
gi|420650174|ref|ZP_15137630.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-32]
gi|420655794|ref|ZP_15142685.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-34]
gi|420661235|ref|ZP_15147547.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-36]
gi|420666588|ref|ZP_15152371.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-42]
gi|420671445|ref|ZP_15156800.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-45]
gi|420676799|ref|ZP_15161666.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-46]
gi|420687759|ref|ZP_15171489.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-48]
gi|420692998|ref|ZP_15176078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-52]
gi|420704611|ref|ZP_15185788.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-54]
gi|420706389|ref|ZP_15187304.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-55]
gi|420720923|ref|ZP_15200119.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-58]
gi|420726384|ref|ZP_15204934.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-59]
gi|420748217|ref|ZP_15224254.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-64]
gi|420759442|ref|ZP_15233758.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-66]
gi|420764663|ref|ZP_15238370.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-71]
gi|420769905|ref|ZP_15243068.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-72]
gi|420774874|ref|ZP_15247575.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-76]
gi|420807166|ref|ZP_15276391.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-93]
gi|420818029|ref|ZP_15286177.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-95]
gi|420823360|ref|ZP_15290952.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-96]
gi|420828433|ref|ZP_15295519.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-98]
gi|420838979|ref|ZP_15305049.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-100]
gi|420844180|ref|ZP_15309765.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-101]
gi|391422606|gb|EIQ85167.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-02]
gi|391437557|gb|EIQ98406.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-04]
gi|391442366|gb|EIR02770.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-06]
gi|391454471|gb|EIR13680.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-07]
gi|391455041|gb|EIR14193.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-08]
gi|391471260|gb|EIR28839.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-11]
gi|391486108|gb|EIR42174.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-13]
gi|391487775|gb|EIR43674.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-15]
gi|391487882|gb|EIR43773.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-14]
gi|391502348|gb|EIR56657.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-19]
gi|391519542|gb|EIR72169.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-34]
gi|391520338|gb|EIR72896.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-32]
gi|391532775|gb|EIR84127.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-36]
gi|391535538|gb|EIR86599.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-42]
gi|391538066|gb|EIR88900.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-45]
gi|391551006|gb|EIS00561.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-46]
gi|391551707|gb|EIS01198.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-48]
gi|391565906|gb|EIS13954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-52]
gi|391571328|gb|EIS18694.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-54]
gi|391588602|gb|EIS33609.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-55]
gi|391593007|gb|EIS37364.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-58]
gi|391597108|gb|EIS40961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-59]
gi|391613237|gb|EIS55227.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-64]
gi|391627830|gb|EIS67996.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-66]
gi|391634437|gb|EIS73715.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-71]
gi|391636270|gb|EIS75328.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-72]
gi|391646534|gb|EIS84268.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-76]
gi|391676433|gb|EIT10843.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-93]
gi|391690528|gb|EIT23552.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-95]
gi|391693033|gb|EIT25818.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-96]
gi|391694762|gb|EIT27392.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-98]
gi|391710727|gb|EIT41757.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-100]
gi|391711306|gb|EIT42283.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-101]
Length = 671
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/656 (55%), Positives = 491/656 (74%), Gaps = 1/656 (0%)
Query: 98 IEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRL 157
++DT + TVV K +FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRL
Sbjct: 1 MDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRL 60
Query: 158 IDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKV 217
IDRPIRPLFP+ +LNE+Q++ V+SVNPQI+PDI ++IG S ALS+S +PF GP+G A+V
Sbjct: 61 IDRPIRPLFPDSFLNEVQVIATVVSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARV 120
Query: 218 GYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKI 277
G+I+ +Y+LNPTT++LK+S LDL+VAGT A++ VESE+ L E+ +L A++FGHE+ ++
Sbjct: 121 GFINDQYVLNPTTDELKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQV 180
Query: 278 AINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNIS 337
I IN LV G+ K +W ++ L +++ ++E ++ AY+I KQ R I
Sbjct: 181 VIENINALVAEAGKPKWDWQAEPVNEALHARVAELAEARLGDAYRITEKQERYTQVDAIK 240
Query: 338 KDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGI 397
D+ +L+ ++ T+D +I IL +E ++R ++L RID R + IR + +RTGI
Sbjct: 241 ADVTEALLAQDD-TLDAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGI 299
Query: 398 LPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRI 457
LPRTHGS+LFTRG+TQALV ATLGT+RD Q ID LMGE TDSF+LHYN PP+ G+ G +
Sbjct: 300 LPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMV 359
Query: 458 GVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDA 517
G PKRREIGHGRLAKR +L V+P+ ++F Y+IR+VSEITESNGSSSMASVCG LAL+DA
Sbjct: 360 GSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDA 419
Query: 518 GVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFG 577
GVPI VAGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +G+TALQMDIKI G
Sbjct: 420 GVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEG 479
Query: 578 ITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGG 637
IT +I+Q+AL +AK +IL M+ + + ++S+FAPR+ T+KI+P KI+DVIGKGG
Sbjct: 480 ITREIMQVALNQAKGARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGG 539
Query: 638 STIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLF 697
S IR LT+ETGT I+I D+G I IA+ + + A RRIE++T +++G++Y G V R+
Sbjct: 540 SVIRALTDETGTTIEIEDDGTIKIAATDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIV 599
Query: 698 DFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q V VKV+ +D +GRI+LS+
Sbjct: 600 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSI 655
>gi|15616978|ref|NP_240191.1| polynucleotide phosphorylase [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681731|ref|YP_002468117.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|219682286|ref|YP_002468670.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|257471431|ref|ZP_05635430.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. LSR1 (Acyrthosiphon pisum)]
gi|384226176|ref|YP_005617339.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. TLW03 (Acyrthosiphon pisum)]
gi|384227234|ref|YP_005618984.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. LL01 (Acyrthosiphon pisum)]
gi|414562733|ref|YP_005617924.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. JF99 (Acyrthosiphon pisum)]
gi|11386962|sp|P57454.1|PNP_BUCAI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782710|sp|B8D9F8.1|PNP_BUCA5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782711|sp|B8D7R0.1|PNP_BUCAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|25311798|pir||E84973 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) [imported] -
Buchnera sp. (strain APS)
gi|10039043|dbj|BAB13077.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
APS (Acyrthosiphon pisum)]
gi|219622019|gb|ACL30175.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219624574|gb|ACL30729.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
gi|311086110|gb|ADP66192.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. LL01 (Acyrthosiphon pisum)]
gi|311086683|gb|ADP66764.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. TLW03 (Acyrthosiphon pisum)]
gi|311087269|gb|ADP67349.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. JF99 (Acyrthosiphon pisum)]
Length = 707
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/692 (55%), Positives = 505/692 (72%), Gaps = 5/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + I++E G IARQA ++V+ S+++T + TVV K + FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTITLETGVIARQANAAVMASMDETAVFVTVVGQKKIHTGQKFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPG FF+REG+PSE E + +RLIDRP+RPLFP+ +LNEIQI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSENEILTARLIDRPLRPLFPKKFLNEIQIIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI SIIG S ALS+S +PF GP+G A+VGYI+ +YILNP ++ +K S LDL+V+
Sbjct: 121 NPQINPDIISIIGASAALSLSGIPFYGPVGAARVGYINNQYILNPISDDMKNSSLDLVVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW--DPIVK 301
GT+ AI+ VE+ESK L E+ IL AIIFGH++ ++ IN I L K+ W
Sbjct: 181 GTQNAILMVEAESKILSEEKILGAIIFGHQQQQVVINNIRSLSNEAS--KLPWVISYPET 238
Query: 302 DKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCIL 361
+KTL KIIN E I AY I NKQ R +I ++I +D EN ID +I I
Sbjct: 239 NKTLELKIINSFEKNISDAYVIFNKQDRIEKLNSIKENIIKLFLD-ENSNIDTLEIEDIF 297
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+E K++RK+IL RID R + IR + +RTGILPRTHGS+LFTRG+TQ+LV TLG
Sbjct: 298 QKIEKKVVRKRILSNQTRIDGREKDMIRALDVRTGILPRTHGSALFTRGETQSLVSVTLG 357
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
TSRD Q +D L+G+ D+F+ HYN PP++ G+IG +G PKRREIGHGRLAKR+LL V+P
Sbjct: 358 TSRDAQNLDELLGDRIDNFLFHYNFPPYSVGEIGMVGSPKRREIGHGRLAKRSLLAVMPT 417
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGI+MGL+K+G + V+
Sbjct: 418 LENFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGNQHVL 477
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMD+KI GIT +II AL +A+ +IL M
Sbjct: 478 LSDILGDEDHLGDMDFKVAGTEEGITALQMDMKIEGITNEIIHSALNEARLARLHILNVM 537
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + ++E+S+FAPR+ IKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + I
Sbjct: 538 NQALNESRSEISEFAPRIHIIKINPEKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTVKI 597
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
+S + A RRI+++T +++G++Y+G V R+ DFGA + I GK+GL+HISQIS K
Sbjct: 598 SSTVKEKAKNAIRRIKEITAEIEVGRIYSGKVTRIVDFGAFVSIGLGKEGLVHISQISDK 657
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV+ +++ LK +Q + VKVL ID +GR++LS+
Sbjct: 658 RVDKVSNHLKIDQIISVKVLEIDRQGRLRLSI 689
>gi|410628467|ref|ZP_11339186.1| polyribonucleotide nucleotidyltransferase [Glaciecola mesophila KMM
241]
gi|410151943|dbj|GAC25955.1| polyribonucleotide nucleotidyltransferase [Glaciecola mesophila KMM
241]
Length = 703
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/686 (53%), Positives = 495/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG + +++E G IARQAT++V+ S++DT +L +VV KD +FFPLTV+Y
Sbjct: 4 ITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAG+IPG FFKREG+PSE ET+ SRLIDRPIRPLFP+G++NE+QI+V V+S NP+I
Sbjct: 64 ERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY DG+Y+LN T +L+ S LDL+VAGT+
Sbjct: 124 PTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLDLVVAGTKG 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++ L ED++L A++FGHE+M+ +NA+ E V K +W + TL
Sbjct: 184 AVLMVESEAEVLSEDVMLGAVMFGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVTLKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
KI ++E ++ +AYQI +K R ++ +++++ + D +++ +L++LES
Sbjct: 244 KIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEA-DAEQDAKEVSELLHELESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDGLNGKVDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S+FAPR+ T+KID KIRDVIGKGG+ IR++TE + T I+I D+G I I +
Sbjct: 543 HRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRSITEASDTNIEIEDDGTIKIFATERA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A +IE++T V+ GK Y G V R+ DFGA + IL GK+GL+HISQI+ +RVN +
Sbjct: 603 KADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E Q + VKV+ ID + R++LS+
Sbjct: 663 DHLSEGQIINVKVMEIDRQNRVRLSI 688
>gi|315126162|ref|YP_004068165.1| polynucleotide phosphorylase [Pseudoalteromonas sp. SM9913]
gi|315014676|gb|ADT68014.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas sp.
SM9913]
Length = 708
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/691 (53%), Positives = 491/691 (71%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G ++VGYI+G+Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE+ L ED++L A+++GHE+ + I AINE G+ +W K+
Sbjct: 181 TDNAVLMVESEADVLAEDVMLGAVVYGHEQSQSIIKAINEFKAEAGKPTWDWTAPEKNVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L K+ ++ K+ +AY+I +K R + +L E T+D ++ +
Sbjct: 241 LEEKVATLAADKVGEAYRITDKVARKEALTAAKDAVVEALTSELAEGETLDKQEVGKVFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ E V+L
Sbjct: 421 TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEEENFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKAARLHILGVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS FAPR+ T++I KI +VIGKGG+TIR LTEETGT I+I D+G I IA
Sbjct: 541 EAISAPSEELSMFAPRIYTMQIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS++R
Sbjct: 601 ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D L E Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNNVADHLSEGQEVKVKVLEVDRQGRVRLSI 691
>gi|344341280|ref|ZP_08772201.1| Polyribonucleotide nucleotidyltransferase [Thiocapsa marina 5811]
gi|343798860|gb|EGV16813.1| Polyribonucleotide nucleotidyltransferase [Thiocapsa marina 5811]
Length = 699
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/687 (54%), Positives = 490/687 (71%), Gaps = 1/687 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K FK G +++E GEIARQA +V+V+++DTV+L TVV K P + +F PLTVDY
Sbjct: 6 IVKQFKLGDQTVTLETGEIARQADGAVMVNVDDTVVLVTVVVDKRPGAVRDFLPLTVDYQ 65
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FF+REG+PSE E + SRLIDRPIRPLF +G+ EIQ++ V S+NP +
Sbjct: 66 EKTYAAGRIPGGFFRREGRPSETEILTSRLIDRPIRPLFAKGFRQEIQVIATVKSLNPAV 125
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQL-KKSHLDLLVAGTE 246
+P++ ++IGVS AL++S +PF GP+G +VGY +G+YILNP + S LDL+VAGTE
Sbjct: 126 NPEVPAMIGVSAALAVSGVPFNGPIGAVRVGYKNGEYILNPAVVGVGPDSDLDLIVAGTE 185
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
KA++ VESE++ L E+++L A++FGHE+M+ AI AI EL VG+ + W P D L
Sbjct: 186 KAVLMVESEARGLSEEVMLGAVLFGHEQMRPAIQAIRELAAEVGKPPIAWTPPPADTDLA 245
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
+ + +I +AY+IK KQ R + + + L + + + E
Sbjct: 246 EAVASACGDRIAEAYRIKEKQDRYAALDAVRASVVADLCGGDAPVWTEQQVMGAIEKFEK 305
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
+R I+ RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALV+ TLGT RD
Sbjct: 306 TTVRGSIIAGNPRIDGRDNVTVRPITIRTGVLPRTHGSALFTRGETQALVITTLGTERDS 365
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q IDAL GE + FMLHYN PPF G+ GR+G PKRRE+GHGRLAKR +L V+P+ +F
Sbjct: 366 QIIDALEGERREHFMLHYNFPPFCVGETGRVGSPKRREVGHGRLAKRGVLAVMPSIEEFP 425
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
YS+R+VSEITESNGSSSMASVCG L+L+DAGVP+ VAG+AMGLIK+G+ +L+DI+
Sbjct: 426 YSVRVVSEITESNGSSSMASVCGTSLSLMDAGVPVKAPVAGVAMGLIKEGDAFAVLTDIM 485
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGT GI ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 486 GDEDHLGDMDFKVAGTSEGINALQMDIKIEGITAEIMETALDQAKAGRLHILGEMNKVIG 545
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ E+S+ APR+I +KI P KIRDVIGKGGS IR +TEETG IDINDEG++ I S
Sbjct: 546 AHRTEMSEHAPRIIELKIHPEKIRDVIGKGGSVIRAITEETGATIDINDEGVVKIFSVEK 605
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+G+EAKRRI +T V++GK+Y G V RL DFGA + IL G+DGL+HISQI +RV +
Sbjct: 606 AAGEEAKRRIRLITADVEVGKIYEGRVARLMDFGAFVTILPGRDGLVHISQICEERVQSV 665
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
+D L E +VRVKVL +D +GRI+LSM
Sbjct: 666 SDKLSEGDQVRVKVLEVDKQGRIRLSM 692
>gi|109897953|ref|YP_661208.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
atlantica T6c]
gi|123064734|sp|Q15VD4.1|PNP_PSEA6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|109700234|gb|ABG40154.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
atlantica T6c]
Length = 703
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/686 (53%), Positives = 495/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG + +++E G IARQAT++V+ S++DT +L +VV KD +FFPLTV+Y
Sbjct: 4 ITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAG+IPG FFKREG+PSE ET+ SRLIDRPIRPLFP+G++NE+QI+V V+S NP+I
Sbjct: 64 ERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY DG+Y+LN T +L+ S LDL+VAGT+
Sbjct: 124 PTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELEISQLDLVVAGTKG 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++ L ED++L A++FGHE+M+ +NA+ E V K +W + TL
Sbjct: 184 AVLMVESEAEVLSEDVMLGAVMFGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVTLKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
KI ++E ++ +AYQI +K R ++ +++++ + D +++ +L++LES
Sbjct: 244 KIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEA-DAEQDAKEVSELLHELESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDGLNGKVDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S+FAPR+ T+KID KIRDVIGKGG+ IR++TE + T I+I D+G I I +
Sbjct: 543 HRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRSITEASDTNIEIEDDGTIKIFATERA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A +IE++T V+ GK Y G V R+ DFGA + IL GK+GL+HISQI+ +RVN +
Sbjct: 603 KADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E Q + VKV+ ID + R++LS+
Sbjct: 663 DHLSEGQIINVKVMEIDRQNRVRLSI 688
>gi|344344340|ref|ZP_08775203.1| Polyribonucleotide nucleotidyltransferase [Marichromatium
purpuratum 984]
gi|343804010|gb|EGV21913.1| Polyribonucleotide nucleotidyltransferase [Marichromatium
purpuratum 984]
Length = 699
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/687 (54%), Positives = 496/687 (72%), Gaps = 1/687 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K F++G+ + +E GEIARQA +VLV++EDTV+L TVV K +FFPLTVDY
Sbjct: 6 IVKQFQFGNQTVRLETGEIARQADGAVLVNMEDTVVLVTVVVDKRAGVERDFFPLTVDYQ 65
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FF+REG+PSE E + +RLIDRP+RPLF +G+ E+QI+ V S+NP +
Sbjct: 66 EKTYAAGRIPGGFFRREGRPSEAEILTARLIDRPLRPLFADGFKREVQIIATVKSLNPAV 125
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQL-KKSHLDLLVAGTE 246
+P++ ++IG S A++++ LPF GP+G A+VGY DG+YILNP L S LDL+VAGTE
Sbjct: 126 NPEVPALIGASAAVALAGLPFNGPIGAARVGYKDGEYILNPPVVGLGPDSDLDLVVAGTE 185
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
+A++ VESE++ L E+++L A++FGHE++++ I AI ELV G+ W +D L
Sbjct: 186 QAVLMVESEARGLSEEVMLGAVLFGHEQLQVVIEAIRELVAEAGKPPFEWSAPERDTALA 245
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
+ + +I +AY+I +K+ R I + ++L + E+ + + LE
Sbjct: 246 AAVAEACGARIAEAYRIHDKKARYTALDTIRAETLATLCEGEDAAWSEQQVMGEIEGLEK 305
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
+ +R ++ RID R +RPI+IRTG+LPRTHGS+LFTRG+TQA+VV TLGT RD
Sbjct: 306 RTVRSAVIAGEPRIDGRDNATVRPITIRTGVLPRTHGSALFTRGETQAMVVTTLGTERDS 365
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q IDAL GE + FMLHYN PPF G+ GR+G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 366 QIIDALDGERREHFMLHYNFPPFCVGESGRVGSPKRREIGHGRLAKRGVLAVMPSIEEFP 425
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAG+AMGLIK+ ++ +L+DI+
Sbjct: 426 YSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSPVAGVAMGLIKEDDQFAVLTDIM 485
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGT+ G+ ALQMDIKI GIT +I++IAL +AK G +ILE+M +
Sbjct: 486 GDEDHLGDMDFKVAGTIEGVNALQMDIKIEGITKEIMEIALEQAKAGRLHILEEMNKVLS 545
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ E+S+ APR+I KI P KIRDVIGKGGS IR++TEETG IDINDEG++ I S
Sbjct: 546 TPREEMSEHAPRIIEFKIHPEKIRDVIGKGGSVIRSITEETGATIDINDEGVVKIFSVAK 605
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+G+EAK+RI +T V++GKVY G V RL DFGA + IL G+DGL+HISQI +RV +
Sbjct: 606 SAGEEAKKRIRLITADVEVGKVYEGKVARLMDFGAFVTILPGRDGLVHISQICEERVQSV 665
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
+D L E VRVKVL +D +GRI+LSM
Sbjct: 666 SDKLSEGDVVRVKVLEVDKQGRIRLSM 692
>gi|392547861|ref|ZP_10294998.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas rubra
ATCC 29570]
Length = 704
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/691 (53%), Positives = 487/691 (70%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAAPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAGRIPG F KREG+PS+ ET+I+RLIDRPIRPLFP+G++NE+Q++ V+S N
Sbjct: 61 NYQEKMYAAGRIPGGFLKREGRPSDNETLIARLIDRPIRPLFPDGFVNEVQVIATVVSSN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G +VG+ DG+Y+LNP+ +L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGVPFNGPIGAVRVGFTDGQYVLNPSVTELEQSKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE++ L E+ +L A+++GHE+ + I A+NE G+ +W K+
Sbjct: 181 TEGAVLMVESEAEILTEEEMLGAVVYGHEQSQAIIQAVNEFAAEAGKPAWDWAAPEKNVE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
L KI I+E K+ AY+I +K R ++ L E+ +D +++ +
Sbjct: 241 LSDKIAAIAEQKVGDAYRITDKVARKDALSEAKAEVVEKLTAELAEDEALDEQEVSKLFS 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I+ RID R + +R + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRGRIIAGEKRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q +D L+G FMLHYN PPF G+ G IG PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQMMDNLIGTQKHHFMLHYNFPPFCVGETGFIGSPKRREIGHGNLAKRGVQAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+L
Sbjct: 421 EEFPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGEDFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAG G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGNSAGVTALQMDIKIEGITKEIMQIALRQAKAARLHILSVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ +LS+FAPR+ T+ I P KI DVIGKGG+ IR LTEET T I+I D+G I IA
Sbjct: 541 QAIASPSQDLSEFAPRIYTMNIPPKKIADVIGKGGAVIRQLTEETDTTIEIEDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ N S +EA RIE LT +++G +YTG V R+ DFGA + +L GKDGL+HISQIS +R
Sbjct: 601 ATNGNSAKEAIARIEALTAELEVGTIYTGKVNRIVDFGAFVNVLPGKDGLVHISQISKER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D L Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNNVADHLSVGQEVKVKVLEVDRQGRVRLSI 691
>gi|417789273|ref|ZP_12436926.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
E899]
gi|333956579|gb|EGL74229.1| polynucleotide phosphorylase/polyadenylase [Cronobacter sakazakii
E899]
Length = 667
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/648 (54%), Positives = 486/648 (75%), Gaps = 2/648 (0%)
Query: 108 VSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFP 167
++ K +FFPLT++Y E+ YAAGRIPG FF+REG+PSE ET+I+RLIDRP+RPLFP
Sbjct: 1 MALKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFP 60
Query: 168 EGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILN 227
EG++NE+Q++ V+SVNPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LN
Sbjct: 61 EGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLN 120
Query: 228 PTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQ 287
PT ++LK S LDL+VAGTE A++ VESE++ L ED +L A++FGHE+ ++ I IN+LV+
Sbjct: 121 PTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVK 180
Query: 288 NVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-- 345
G+ + +W P ++ L +++ ++E ++ AY+I +KQ R I D+ ++L
Sbjct: 181 EAGKPRWDWQPEAANEALNARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQAE 240
Query: 346 DNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSS 405
E +D N++ IL+ +E ++R ++L RID R + IR + +RTG+LPRTHGS+
Sbjct: 241 QAEGDALDENELGDILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSA 300
Query: 406 LFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREI 465
LFTRG+TQALV ATLGT RD Q ID LMGE TD F+ HYN PP++ G+ G +G PKRREI
Sbjct: 301 LFTRGETQALVTATLGTERDAQNIDELMGERTDRFLFHYNFPPYSVGETGMVGSPKRREI 360
Query: 466 GHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHV 525
GHGRLAKR +L V+P ++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI V
Sbjct: 361 GHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAV 420
Query: 526 AGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQI 585
AGIAMGL+K+GE V+LSDILGDED GDMDFKVAG+ GITALQMDIKI GIT +I+Q+
Sbjct: 421 AGIAMGLVKEGENFVVLSDILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITKEIMQV 480
Query: 586 ALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTE 645
AL +AK +IL M+ + + ++S+FAPR+ TIKI P KI+DVIGKGGS IR LTE
Sbjct: 481 ALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTE 540
Query: 646 ETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRI 705
ETGT I+I D+G + IA+ + + A RRIE++T +++G++Y G V R+ DFGA + I
Sbjct: 541 ETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAI 600
Query: 706 LSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL +D +GR++LS+
Sbjct: 601 GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSI 648
>gi|410616308|ref|ZP_11327300.1| polyribonucleotide nucleotidyltransferase [Glaciecola polaris LMG
21857]
gi|410164017|dbj|GAC31438.1| polyribonucleotide nucleotidyltransferase [Glaciecola polaris LMG
21857]
Length = 703
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/686 (53%), Positives = 496/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG + +++E G IARQAT++V+ S++DT +L +VV KD +FFPLTV+Y
Sbjct: 4 ITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDAKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAG+IPG FFKREG+PSE ET+ SRLIDRPIRPLFP+G++NE+QI+V V+S NP+I
Sbjct: 64 ERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY DG+Y+LN T +L+ S LDL+VAGT+
Sbjct: 124 PTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELENSQLDLVVAGTKG 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++ L ED++L A+++GHE+M+ ++A++E V K NW + TL
Sbjct: 184 AVLMVESEAQILSEDVMLGAVMYGHEQMQTVVDAVSEFAAEVNTPKWNWVAEPANVTLKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
KI ++E ++ +AYQI +K R ++ +++++ + D +++ +L++LES
Sbjct: 244 KIKALAEAQMTEAYQISDKMARKDAIVALTDKTVAAIVEA-DAEQDSKEVSELLHELESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDGLNGKVDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S+FAPR+ T+KID KIR+VIGKGG+ IR++TE + T I+I D+G I I +
Sbjct: 543 HRDEMSEFAPRIYTLKIDQDKIREVIGKGGAMIRSITEASDTNIEIEDDGTIKIFATERA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A RIE++T V+ GK Y G V R+ DFGA + IL GK+GL+HISQI+ +RVN +
Sbjct: 603 KADIAISRIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E Q + VKV+ ID + R++LS+
Sbjct: 663 DHLSEGQIINVKVMEIDRQNRVRLSI 688
>gi|410645420|ref|ZP_11355883.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
NO2]
gi|410134931|dbj|GAC04282.1| polyribonucleotide nucleotidyltransferase [Glaciecola agarilytica
NO2]
Length = 703
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/686 (53%), Positives = 494/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG + +++E G IARQAT++V+ S++DT +L +VV KD +FFPLTV+Y
Sbjct: 4 ITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAG+IPG FFKREG+PSE ET+ SRLIDRPIRPLFP+G++NE+QI+V V+S NP+I
Sbjct: 64 ERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY DG+Y+LN T +L+ S LDL+VAGT+
Sbjct: 124 PTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLDLVVAGTQS 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++ L ED++L A+++GHE+M+ +NA+ E V K +W + TL
Sbjct: 184 AVLMVESEAEVLSEDVMLGAVMYGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVTLKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
KI ++E ++ +AYQI +K R ++ +++++ + D +++ +L++LES
Sbjct: 244 KIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEADEEQ-DSKEVSELLHELESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDGLNGKEDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S+FAPR+ T+KID KIRDVIGKGG+ IR +TE + T I+I D+G I I +
Sbjct: 543 HRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATERA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A +IE++T V+ GK Y G V R+ DFGA + IL GK+GL+HISQI+ +RVN +
Sbjct: 603 KADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E Q + VKV+ ID + R++LS+
Sbjct: 663 DHLSEGQIINVKVMEIDRQNRVRLSI 688
>gi|288940255|ref|YP_003442495.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
DSM 180]
gi|288895627|gb|ADC61463.1| polyribonucleotide nucleotidyltransferase [Allochromatium vinosum
DSM 180]
Length = 699
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/687 (55%), Positives = 494/687 (71%), Gaps = 1/687 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K F++G+ + +E GEIARQA +VLV+++DTV+L TVV K P + +F PLTV+Y
Sbjct: 6 IVKEFQFGNQTVRLETGEIARQADGAVLVNMDDTVVLVTVVVDKRPGAERDFLPLTVEYQ 65
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FF+REG+PSE E + +RLIDRPIRPLF EG+ NE+QI+ V S+NP +
Sbjct: 66 EKTYAAGRIPGGFFRREGRPSEGEILTARLIDRPIRPLFVEGFCNEVQIIATVKSLNPAV 125
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKK-SHLDLLVAGTE 246
+P++ ++IG S AL++S PF GP+ A+VGY +G+YILNP L S LDL+VAGT+
Sbjct: 126 NPEVPALIGASAALALSGAPFNGPIAAARVGYKNGEYILNPALTGLNPDSDLDLVVAGTD 185
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
KA++ VESE++ L E+I+L A++FGHE+M++ I AI EL G+ ++W P + L
Sbjct: 186 KAVLMVESEARGLSEEIMLGAVLFGHEQMQVVIQAIRELAAEAGKPAMDWTPHAVNPVLT 245
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
+ I AY+IK KQ R I L E + + + LES
Sbjct: 246 EAVRLAGGDAIAAAYRIKEKQARYTALGAARTAIVEQLCAGETPAWTESQVKAAIEALES 305
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
+R+ IL RID R +RPI+IRTG+LPRTHGS+LFTRG+TQA+V+ TLGT RD
Sbjct: 306 TTVRESILAGEPRIDGRDTKTVRPITIRTGVLPRTHGSALFTRGETQAMVITTLGTERDS 365
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q IDAL GE + FMLHYN PPF G+IGR+G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 366 QIIDALEGERREHFMLHYNFPPFCVGEIGRVGSPKRREIGHGRLAKRGVLAVMPSIEEFP 425
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAG+AMGLIK+GE+ +L+DI+
Sbjct: 426 YSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEGERFAVLTDIM 485
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGT +GI ALQMDIKI GIT +I++IAL +AK+G +IL +M +
Sbjct: 486 GDEDHLGDMDFKVAGTADGINALQMDIKIEGITREIMEIALAQAKEGRLHILGEMNKVID 545
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ E+S+ APR+I IKI P KIRDVIGKGGS IR +TEETG IDIND+G++ I S
Sbjct: 546 SHRVEMSEHAPRIIEIKIHPEKIRDVIGKGGSVIRAITEETGATIDINDDGVVKIFSVVK 605
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+G+EAKRRI +T V++GKVY G V RL DFGA + IL G+DGL+HISQI +RV +
Sbjct: 606 AAGEEAKRRIRLITADVEVGKVYEGKVARLMDFGAFVTILPGRDGLVHISQICEERVQSV 665
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
+D LKE VRVKVL +D +GRI+LSM
Sbjct: 666 SDKLKEGDVVRVKVLEVDKQGRIRLSM 692
>gi|304310511|ref|YP_003810109.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HdN1]
gi|301796244|emb|CBL44452.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
HdN1]
Length = 701
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/690 (53%), Positives = 489/690 (70%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G ++E G+IARQAT +VLVS +L TVV K + +FFPLT
Sbjct: 1 MFNVVKKEFRFGDQTYTLETGKIARQATGAVLVSTAQVAVLVTVVGKKKADPSKDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YA+GRIPG +FKREGKPSE+ET+ SRLIDRP+RPLFPEG+ NE+QI+ VLS
Sbjct: 61 VNYQEKTYASGRIPGGYFKREGKPSEKETLTSRLIDRPLRPLFPEGFRNEVQIIATVLST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDIA+++G S AL+IS +PF GP+G A+VG++DG Y+LNP L+KS LDL+VA
Sbjct: 121 DKKTDPDIAALVGASAALAISGIPFNGPIGAARVGFVDGSYVLNPCYAALEKSSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT++A++ VESE+K+L ED +L A+++GH++M++AI AIN + VG + W ++
Sbjct: 181 GTDQAVLMVESEAKELTEDQMLGAVLYGHQEMQVAIEAINAFAKEVGTPRWEWQAEEENV 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++I + E ++R+AY I KQ R I S L I +++ +L D
Sbjct: 241 GLKARIRDGYEAQLRQAYTITEKQARYEQVGAIKAQAVSDLAVEGQSEITKEEVSRLLGD 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R IL RID R +RPISI G L RTHGS+LFTRG+TQA+V ATLG+
Sbjct: 301 LEYYVVRDNILSAHPRIDGRDNKTVRPISIEVGNLARTHGSALFTRGETQAIVTATLGSM 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L G ++ FMLHYN PPF G+ G PKRREIGHGRLA+R + VLP N+
Sbjct: 361 RDSQTVDYLEGARSEPFMLHYNFPPFCVGETGGQLGPKRREIGHGRLARRGIQAVLPENS 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G++ +L+
Sbjct: 421 AFPYAIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+++AL +A+ G +IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIDGITEEIMEVALNQARDGRLHILGEMAK 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + LS+ AP +T KIDP KIRDVIGKGG+TIR + EET IDI D G++ I
Sbjct: 541 VIEASRPALSRDAPVYLTTKIDPDKIRDVIGKGGATIRQICEETSATIDIEDTGVVRIYG 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N S A R+ +T +IG++YTG V R+ DFGA + + G+DGL+HISQI+ +RV
Sbjct: 601 ENGGSADAALARVLAITTEPEIGQIYTGKVARIVDFGAFVTFMPGQDGLVHISQIAEERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+E Q+V+VKVL ID+RGR+KLS+
Sbjct: 661 AKVTDYLQEGQEVQVKVLDIDNRGRVKLSI 690
>gi|410639361|ref|ZP_11349910.1| polyribonucleotide nucleotidyltransferase [Glaciecola chathamensis
S18K6]
gi|410141149|dbj|GAC08097.1| polyribonucleotide nucleotidyltransferase [Glaciecola chathamensis
S18K6]
Length = 703
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/686 (53%), Positives = 494/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG + +++E G IARQAT++V+ S++DT +L +VV KD +FFPLTV+Y
Sbjct: 4 ITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAG+IPG FFKREG+PSE ET+ SRLIDRPIRPLFP+G++NE+QI+V V+S NP+I
Sbjct: 64 ERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY DG+Y+LN T +L+ S LDL+VAGT+
Sbjct: 124 PTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLDLVVAGTKG 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++ L ED++L A+++GHE+M+ +NA+ E V K +W + TL
Sbjct: 184 AVLMVESEAEVLSEDVMLGAVMYGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVTLKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
KI ++E ++ +AYQI +K R ++ +++++ + D +++ +L++LES
Sbjct: 244 KIKALAETEMTEAYQISDKMARKDAIVALTDKTVAAIVEADEEQ-DAKEVSELLHELESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDGLNGKVDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S+FAPR+ T+KID KIRDVIGKGG+ IR +TE + T I+I D+G I I +
Sbjct: 543 HRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATERA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A +IE++T V+ GK Y G V R+ DFGA + IL GK+GL+HISQI+ +RVN +
Sbjct: 603 KADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E Q + VKV+ ID + R++LS+
Sbjct: 663 DHLSEGQIINVKVMEIDRQNRVRLSI 688
>gi|221134255|ref|ZP_03560560.1| polynucleotide phosphorylase/polyadenylase [Glaciecola sp.
HTCC2999]
Length = 702
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/686 (53%), Positives = 494/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I ++F+YG + +++E G +ARQAT++V+ S++DT +L TVV K+ + +FFPLTV+Y
Sbjct: 4 ITQNFQYGQHTVTLETGVVARQATAAVMASMDDTSVLVTVVGKKEAKADQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EKAYAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFPE + NE+QIV+ V+S NP+I
Sbjct: 64 EKAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPESFKNEVQIVITVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY +G+YILN + +S LDL+VAGTE
Sbjct: 124 PTDIISLIGTSAALAISGIPFNGPIGAARVGYTNGEYILNTRHSEQAESQLDLVVAGTES 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+++L A++FGHE+ + +N + E V +W P ++ L +
Sbjct: 184 AVLMVESEADILSEEVMLGAVVFGHEQSQAVVNNVREFAAKVNTPMWDWTPEAENTELKT 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ +++ + +AYQI +K R ++ ++++ EN D +++ +L+DLES
Sbjct: 244 KVAELAKAGMTEAYQISDKLARKDAVVAVTSAASAAIL-AENPDQDPKEVSELLHDLESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TG+LPRTHGSS+FTRG+TQALV ATLGT RD Q
Sbjct: 303 VVRSRILAGEPRIDGRDPAMIRALDVATGVLPRTHGSSVFTRGETQALVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G T FMLHYN PP+ G+ G IG PKRREIGHGRLAKR + V+P+ F Y
Sbjct: 363 MIDELGGTSTSRFMLHYNFPPYCVGETGFIGSPKRREIGHGRLAKRGIQAVMPSETDFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT NGITALQMDIKI GIT +I+QIAL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQIALKQAKEARLHILGVMDQAIGG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++ELS+FAPR+ T+KID KIRDVIGKGG+ IR +TE + T I+I D+G I I +
Sbjct: 543 HRDELSEFAPRIYTLKIDQEKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATEKA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A +IE++T +++GKVYTG V R+ DFGA + +L GKDGL+HISQI+ +RV +T
Sbjct: 603 KATIAIEKIEQVTAEIEVGKVYTGKVSRIADFGAFVEVLPGKDGLVHISQIAHERVAKVT 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L E Q+V+VKV+ ID + R++LSM
Sbjct: 663 DYLSEGQEVQVKVMEIDRQNRVRLSM 688
>gi|254787145|ref|YP_003074574.1| polynucleotide phosphorylase/polyadenylase [Teredinibacter turnerae
T7901]
gi|259534168|sp|C5BPV5.1|PNP_TERTT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|237684870|gb|ACR12134.1| polyribonucleotide nucleotidyltransferase [Teredinibacter turnerae
T7901]
Length = 705
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 493/691 (71%), Gaps = 4/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N +IK F+YG+ I++E G IARQAT +VL S+ T +L TVV K+ + +FFPL+V
Sbjct: 1 MNPVIKKFQYGNDTITLETGRIARQATGAVLASMGKTSVLCTVVGAKEASPGQDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EKAYAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP+G++NE+Q+V V++
Sbjct: 61 HYQEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFVNEVQVVCTVVAAE 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI--DGKYILNPTTEQLKKSHLDLLV 242
+DPDI ++IG S AL+IS +PF GP+G A+VGY DG Y+LNPT + L S LD++V
Sbjct: 121 KDVDPDICAMIGTSAALAISGIPFNGPIGAARVGYTQADG-YLLNPTYQALASSELDMVV 179
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+ +LPEDI+L A+++ H++M+ + A+NEL ++ G+ +W P +
Sbjct: 180 AGTQDAVLMVESEANELPEDIMLGAVLYAHQEMQAVVQAVNELAKDAGKPTWDWQPEAVN 239
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L+ + E I AY+I +KQ R + + L E I +D+ +
Sbjct: 240 QALVDALKADFEESIGVAYRITDKQKRYDRLSELRSQAVAQLA-GEGSDISQDDVKKVFG 298
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE I+R +++ RID R +RP+ + G+LP+ HGS+LFTRG+TQALVVATLG+
Sbjct: 299 KLEKNIVRSRVVAGEPRIDGRDTKTVRPLQVEVGVLPKVHGSALFTRGETQALVVATLGS 358
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q IDAL GE D+FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LP
Sbjct: 359 ARDAQIIDALEGEHRDNFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPKE 418
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ +L
Sbjct: 419 DQFPYTMRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEENGFAVL 478
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I++ AL +A +IL +M
Sbjct: 479 TDILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEEIMETALEQALHARLHILSEMN 538
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + LS AP+ T+K+DP KIRD+IGKGG+TIR++TEETG IDI+D+G + I
Sbjct: 539 AVIAQPRESLSDNAPQFHTMKVDPEKIRDIIGKGGATIRSITEETGASIDIDDDGTVKIY 598
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ S Q A RIE++T +IG+VY G V+R+ DFGA + L GKDGL+HISQI+ +R
Sbjct: 599 GDDGDSLQGAINRIEEITAEAEIGEVYKGKVVRIVDFGAFVNFLPGKDGLVHISQIAHER 658
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD+LKE Q+V VK + ID RGRIKLS+
Sbjct: 659 VQNVTDYLKEGQEVDVKCMDIDQRGRIKLSI 689
>gi|444920949|ref|ZP_21240788.1| Polyribonucleotide nucleotidyltransferase [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444508169|gb|ELV08342.1| Polyribonucleotide nucleotidyltransferase [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 699
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/691 (51%), Positives = 498/691 (72%), Gaps = 4/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I K F YG+ K+ +E+GE+ARQA ++V V +E TV+ T V+ + +FFPLTV
Sbjct: 3 LKAIQKEFMYGNQKVVLEVGEMARQANAAVKVDVEGTVVFVTCVASTKFDPSRDFFPLTV 62
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FF+REG+PSE ET+I+RLIDRP+RPLF EG+ NE Q++ V+S+N
Sbjct: 63 NYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPLRPLFAEGFTNETQVIATVVSIN 122
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+++PDI ++IG S A+S++ LPF GPLG A+VGY +G+Y+LNP+ EQL S LDL+VAG
Sbjct: 123 PEVNPDIPAMIGASAAVSLAGLPFAGPLGAARVGYENGEYLLNPSKEQLATSKLDLVVAG 182
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+ A++ VESE++ L ED++L A++FGH+ M++ I IN L VG + + KD
Sbjct: 183 TKDAVLMVESEAELLSEDVMLGAVMFGHDAMQVVIENINALCAEVGVTTFEYQTVEKDAE 242
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN-LTIDINDINCILYD 363
L + + + K+ AY I K R + + +LI +N T D IN ++ +
Sbjct: 243 LEAAVKAFAADKLEAAYSISVKADRYAAIDALKAEAVETLITEDNGYTKDA--INAVIDE 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+ +++R ILD RID R +RPI+ R G+LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 301 MSYRLVRDHILDGKPRIDGRDTTTVRPINSRVGVLPRTHGSALFTRGETQALVVTTLGTD 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL GE+ D F+ HYN PP++ G+ G +G PKRREIGHGRLAKR + VLP+ +
Sbjct: 361 RDAQIIDALDGEYKDKFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVQAVLPSMD 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
++ Y++R+VSEITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGLIK+GE+ +L+
Sbjct: 421 EYPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLIKEGERFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GI+ALQMDIKI GIT +I++ AL +AK +I+++M
Sbjct: 481 DILGDEDHLGDMDFKVAGTTDGISALQMDIKITGITKEIMEQALAQAKVARLHIIDEMSA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + E+S+FAPR +I+P KIRDVIGKGG TIR +TEETG I+I D+G I IA+
Sbjct: 541 TLNTARPEISEFAPRFTVFRINPDKIRDVIGKGGVTIRGITEETGAVIEIEDDGTIKIAA 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI-SSKR 722
N+ EA++RIE++T +++G VY V+R+ DFGA + ++ G+DG++H+SQI S +R
Sbjct: 601 SNADQAAEARKRIEEITADIEVGTVYEAPVVRIMDFGAFVNLMPGRDGMVHVSQIPSEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++D+++ Q VRVKVL ID +GRI+L+M
Sbjct: 661 IQNVSDYVQVGQVVRVKVLEIDKQGRIRLTM 691
>gi|392310280|ref|ZP_10272814.1| polynucleotide phosphorylase [Pseudoalteromonas citrea NCIMB 1889]
Length = 708
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/691 (53%), Positives = 487/691 (70%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
IIK F+ G + ++IE G IARQA +VL SI DT +L TVV +D +FFPLTV
Sbjct: 1 MQAIIKEFQLGQHTVTIETGAIARQADGAVLASIGDTSVLVTVVGKRDAQPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVN
Sbjct: 61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I PD+ ++IG S AL+IS +PF GP+G A+VGYID +Y+LNPT ++L++S LDL+VAG
Sbjct: 121 PEIQPDMVAMIGTSAALAISGIPFSGPIGAARVGYIDDQYVLNPTLKELEESKLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ LPED++L A+++GHE+ + I AINE G+ +W K+
Sbjct: 181 TENAVLMVESEADVLPEDVMLGAVVYGHEQSQAIITAINEFKAEAGKPTWDWTAPEKNVA 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILY 362
K+ ++ K+ AY I +K R + + +L E T+D ++ +
Sbjct: 241 ASDKVAALAADKVGAAYLITDKVERKTALTAAKEGVVEALTAELAEGETLDTQEVGKLFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE I+R +I+ RID R + +R + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 ALEKNIVRSRIIAGEKRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ E V+L
Sbjct: 421 TDFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEEENFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GI +I+QIAL +AK +IL M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEAGITALQMDIKIEGINKEIMQIALKQAKAARLHILSVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS+FAPR+ T+ I P KI +VIGKGG+TIR LTEETGT I+I D+G I IA
Sbjct: 541 EAIAAPSEELSEFAPRIYTMNIPPKKIAEVIGKGGATIRQLTEETGTTIEIEDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +S ++A RIE LT +++G +Y G V+R+ DFGA + +L GKDGL+HISQIS +R
Sbjct: 601 ATDGLSAKDAISRIEALTAELEVGTIYNGKVVRIVDFGAFVNVLPGKDGLVHISQISPER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D L Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNSVGDHLTVGQEVKVKVLEVDRQGRVRLSI 691
>gi|339477992|ref|YP_004706812.1| polyribonucleotide nucleotidyltransferase [Candidatus Moranella
endobia PCIT]
gi|338172543|gb|AEI74944.1| polyribonucleotide nucleotidyltransferase [Candidatus Moranella
endobia PCIT]
Length = 703
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/696 (52%), Positives = 503/696 (72%), Gaps = 1/696 (0%)
Query: 58 MMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTY 117
M K L ++ F+YG + +++E G +ARQAT++V+VS++DT +L TVV KD
Sbjct: 1 MKKEIILLTPLVHKFQYGQHTVTLETGIMARQATAAVMVSMDDTAVLVTVVGAKDAKIGQ 60
Query: 118 NFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIV 177
++FPLTV+Y E+ YAAGR PG FF+REG+PSE ET+I+RLIDRPIRPLFP G+LNE+Q++
Sbjct: 61 SYFPLTVNYQERTYAAGRFPGGFFRREGRPSEGETLIARLIDRPIRPLFPAGFLNEVQVI 120
Query: 178 VYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSH 237
V+S NPQ+ PDI ++IGVS LS+S +PF GP+G A+VGYI+ +Y+LNPT +L S
Sbjct: 121 ATVVSGNPQVSPDIVAMIGVSAVLSLSGIPFSGPIGAARVGYINDQYVLNPTQAELATSR 180
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGTE A++ VESE++ L E+ +L AI++GH + ++ I I++LV G+ K ++
Sbjct: 181 LDLVVAGTENAVLMVESEAQLLSEEQMLGAIVYGHNQQQVVIENIHQLVTLAGKPKWPYN 240
Query: 298 PIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDI 357
D L ++ ++E ++ AY I KQ R I D+ L ++ I+ N I
Sbjct: 241 MPDVDVALQERVTELAEARLSDAYYITQKQERYAMLDAIKADVVEELTSKDD-NINQNTI 299
Query: 358 NCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVV 417
IL LE ++R +IL RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV
Sbjct: 300 RDILGTLEKNVVRSRILRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 359
Query: 418 ATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP 477
ATLGT R+ Q ID L GE + F+LHYN PP+ G+IG +G PKRREIGHGRLAKR ++
Sbjct: 360 ATLGTERNAQNIDELTGERIERFLLHYNFPPYCVGEIGVVGAPKRREIGHGRLAKRGVMA 419
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE 537
V+PN ++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+ +
Sbjct: 420 VMPNASEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLIKEKD 479
Query: 538 KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
++LSDIL DED GDMDFKVAG+ GITALQMDIKI GI +I+Q+AL +AK +I
Sbjct: 480 NFMVLSDILSDEDHLGDMDFKVAGSREGITALQMDIKIEGINSEIMQVALNQAKSARMHI 539
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
L+ M+ + + ++S+FAPR+ TIKI KI+DVIGKGGS IR LTEETGT I+I D+G
Sbjct: 540 LDVMELAISSPRGDISEFAPRIHTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 599
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQ 717
+ ++S +S + A RIE++T +++ +VY G V R+ DFGA + ++ GK+GL+HISQ
Sbjct: 600 TVKVSSNDSNKARAAICRIEEITSEIEVNRVYNGKVTRIVDFGAFVALVGGKEGLVHISQ 659
Query: 718 ISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I++KR++ + D+L+ Q+V VKVL +D +GR++LS+
Sbjct: 660 IANKRIDKVNDYLELGQEVHVKVLEVDRQGRVRLSI 695
>gi|410622037|ref|ZP_11332876.1| polyribonucleotide nucleotidyltransferase [Glaciecola pallidula DSM
14239 = ACAM 615]
gi|410158435|dbj|GAC28250.1| polyribonucleotide nucleotidyltransferase [Glaciecola pallidula DSM
14239 = ACAM 615]
Length = 702
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/686 (52%), Positives = 499/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F+YG + +++E G IARQAT++V+ S++DT +L +VV K+ + FFPLTV+Y
Sbjct: 4 ITKTFQYGQHTVTLETGVIARQATAAVMASMDDTCVLVSVVGKKEAKADQGFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EKAYAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+QI++ V+S NP+I
Sbjct: 64 EKAYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQIIITVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY DG YILN + + ++S L+L+VAGT+
Sbjct: 124 PTDIISLIGTSAALAISGMPFNGPIGAARVGYKDGGYILNTRSSEQEESQLNLVVAGTKS 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L ED++L A+++GHE+ + INAI+E V + NW+ ++ L +
Sbjct: 184 AVLMVESEADILSEDVMLGAVVYGHEQSQTVINAISEFAAEVDTESWNWEAEAENTGLKA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
++ ++E + +AYQI +K +R +++ ++++D N D + + +L+ LES
Sbjct: 244 QVKELAEAGMTEAYQISDKMLRKDAITAVTEKAIAAIVDA-NPAQDRKEASDLLHHLESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R + IR +++ TG+LPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGEKRIDGREPDTIRALNVATGLLPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G + FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDELGGMASSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMQAVMPSAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K + VILSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVILSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +ILE M + +
Sbjct: 483 DEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQLALKQAKEARLHILEVMDSAIAG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S++APR+ +K+D KIRDVIGKGG+ IR +TE + T I+I D+G I I +
Sbjct: 543 PRDEMSEYAPRIYKMKVDQDKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATEKA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A RI+ +T ++++G VY G V+R+ DFGA + +L GK+GL+HISQI+ RV +T
Sbjct: 603 KADIAIDRIKAVTANIEVGTVYNGKVMRIVDFGAFVEVLPGKEGLVHISQIAHDRVAKVT 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
DFLKE Q V VKV+ ID + R++LS+
Sbjct: 663 DFLKEGQMVDVKVMEIDRQNRVRLSI 688
>gi|406904143|gb|EKD46016.1| hypothetical protein ACD_69C00047G0003 [uncultured bacterium]
Length = 695
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/689 (52%), Positives = 505/689 (73%), Gaps = 5/689 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F+YG +++E G IARQAT +V+V++ DTV+L TVV+ K+ + +FFPLTV+Y
Sbjct: 4 IKKTFQYGEQIVTLETGAIARQATGAVMVTMGDTVVLVTVVAEKEARAERDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YA GR+PG FFKREG+PS +ET+ISRLIDRP+RPLFP+ ++NE Q+V V+S++P I
Sbjct: 64 ERYYACGRLPGGFFKREGRPSMQETLISRLIDRPLRPLFPDDFINETQVVATVMSLDPDI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG + A+ IS +PF GPL A+VGY DG YILNP +QL+ LDL+VAGT+
Sbjct: 124 LPDVPALIGAAAAIEISGIPFNGPLAAARVGYKDGAYILNPGVKQLETMDLDLMVAGTKT 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
AI+ VESE+ +L E I+L A++FGH +M++AI I E ++ G+ K ++ P L++
Sbjct: 184 AILMVESEAGELSEKIMLGAVMFGHREMQVAIETIKEFAKDAGKPKWDFKPSQAHHELVT 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTF---KNISKDIYSSLIDNENLTIDINDINCILYDL 364
KI +E K+ AY+I NKQ R L +N + D++ ++++++ + + I++D+
Sbjct: 244 KIKKATEAKLTAAYEITNKQSRSLKLDEIRNEAIDLF--VLEDQDDSPTKEHVGNIVHDI 301
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +I+R +IL RID R +RPI I G+LPR+HGS++FTRG+TQA VV TLGT+
Sbjct: 302 ERQIVRGRILAGQPRIDGRDKKTVRPIDINLGVLPRSHGSAIFTRGETQAFVVTTLGTAG 361
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID GE ++FMLHYN PP++TG++G +G P+RREIGHG LAKRAL V+P+ +
Sbjct: 362 DAQVIDVPAGESKENFMLHYNFPPYSTGEVGMMGSPRRREIGHGNLAKRALQAVIPSAEE 421
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y +R+VSEITESNGSSSMASVCG L+L+DAGVPI VAGIAMGLIK+GE+ +L+D
Sbjct: 422 FPYVLRVVSEITESNGSSSMASVCGASLSLMDAGVPIKSSVAGIAMGLIKEGERFAVLTD 481
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +I M +
Sbjct: 482 ILGDEDFLGDMDFKVAGTAEGITALQMDIKIDGITEEIMQLALDQAKEARIHIFNIMHAK 541
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + +S FAPR+ T+ I+P KIRDVIGKGG+ IR L EETG IDI D+G + IAS
Sbjct: 542 IAAPREHISDFAPRITTMHINPGKIRDVIGKGGAVIRGLVEETGATIDIKDDGTVMIASV 601
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + EAKRRIE L QIGK+Y+G V ++ DFGA++ L KDGL+HISQI++KRV+
Sbjct: 602 DKAAAAEAKRRIEDLIAEAQIGKIYSGTVTKIMDFGAVVSFLPNKDGLVHISQIAAKRVS 661
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++L+E Q+V+VKVL +D G+++LS+
Sbjct: 662 DVREYLQEGQEVKVKVLEVDRAGKVRLSI 690
>gi|390951415|ref|YP_006415174.1| polyribonucleotide nucleotidyltransferase [Thiocystis violascens
DSM 198]
gi|390427984|gb|AFL75049.1| polyribonucleotide nucleotidyltransferase [Thiocystis violascens
DSM 198]
Length = 698
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/687 (54%), Positives = 494/687 (71%), Gaps = 2/687 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+K ++G+ + +E GEIARQA +V+V+++DTV+L TVV K P +F PLTVDY
Sbjct: 6 IVKQVQFGNQTLRLETGEIARQADGAVMVNLDDTVVLVTVVVDKRPGVVRDFLPLTVDYQ 65
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FF+REG+PSE E + SRLIDRP+RPLF EG+ E+QI+ V S+NP +
Sbjct: 66 EKTYAAGRIPGGFFRREGRPSEGEILTSRLIDRPVRPLFAEGFTREVQIIATVKSLNPAV 125
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQL-KKSHLDLLVAGTE 246
+P++ ++IG S ALSI+ LPF GP+G A+VGY +G+YILNP L S LDL+VAGT+
Sbjct: 126 NPEVPALIGASAALSIAGLPFNGPIGAARVGYKNGEYILNPAVIGLGPDSDLDLIVAGTD 185
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
+A++ VESE++ L E+++L A++FGHE+M++ I AI EL V + ++ W P ++ L
Sbjct: 186 QAVLMVESEARGLSEEVMLGAVLFGHEQMQVVIQAIRELAAEVNKPELPWTPPEPNQELA 245
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
+ N I AY+I+ KQ+R +L+ E + + LES
Sbjct: 246 DAVANACGEPIATAYRIREKQVRYAALDAARASALDTLV-GEAPKWTEAQVRTAIEQLES 304
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
+R IL RID R +RPI+IRTG+LPRTHGS+LFTRG+TQA+V+ TLGT RD
Sbjct: 305 TTVRGSILAGNPRIDGRDGKTVRPITIRTGVLPRTHGSALFTRGETQAMVITTLGTERDS 364
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q IDAL GE + FMLHYN PPF G+ GR+G PKRREIGHGRLAKR +L V+P+ +F
Sbjct: 365 QIIDALEGERREHFMLHYNFPPFCVGETGRVGSPKRREIGHGRLAKRGILAVMPSIEEFP 424
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAG+AMGLIK+G++ +L+DI+
Sbjct: 425 YSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEGDQFAVLTDIM 484
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGTV GI ALQMDIKI GIT +I++ AL +AK G +IL +M +
Sbjct: 485 GDEDHLGDMDFKVAGTVAGINALQMDIKIQGITKEIMETALAQAKDGRLHILGEMAKVIQ 544
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
++E+S+ APR+I KI P KIRDVIGKGG+ IR++TEETG IDIND+G++ I S
Sbjct: 545 AHRSEMSEHAPRIIEFKIHPEKIRDVIGKGGAVIRSITEETGATIDINDDGVVKIFSVEK 604
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+G+EAK+RI +T V++GK+Y G V RL DFGA + IL G+DGL+HISQI +RV +
Sbjct: 605 SAGEEAKKRIRLITADVEVGKIYEGKVARLMDFGAFVTILPGRDGLVHISQICEERVQSV 664
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
+D LKE +VRVKVL +D +GRI+LSM
Sbjct: 665 SDKLKEGDQVRVKVLEVDKQGRIRLSM 691
>gi|444377615|ref|ZP_21176824.1| Polyribonucleotide nucleotidyltransferase [Enterovibrio sp. AK16]
gi|443678199|gb|ELT84871.1| Polyribonucleotide nucleotidyltransferase [Enterovibrio sp. AK16]
Length = 709
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/689 (51%), Positives = 505/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG++ +++E G +ARQAT++V+VS++DT + +VV K+ +FFPLTV
Sbjct: 1 MNPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKEAVEGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+SVN
Sbjct: 61 NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDNFKNEVQVIATVVSVN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P + PDI ++IG S AL+IS +PF GP+G A+VG+I+ + +LNP+ +L+ S LDL+VAG
Sbjct: 121 PNVSPDIVTMIGTSAALAISGIPFNGPIGAARVGFINDELVLNPSNTELENSRLDLVVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+ +L E+ +L A++FGH++ ++ I AINE V +W +
Sbjct: 181 TEGAVLMVESEADRLSEEQMLQAVVFGHDQQQVVIQAINEFAAEVATPAWDWTAPEVNTE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +++ ++E + +AYQI K R I + L++ + T+D +I +LY L
Sbjct: 241 LKARVAELAEARFTEAYQITEKMARYDRVGEIKSSVKEQLLEQDE-TLDAREIQGMLYSL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R +I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT R
Sbjct: 300 EKNVVRSRIIAGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q ID++ GE TD+F+ HYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+ +
Sbjct: 360 DAQIIDSITGETTDNFLFHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQSVMPSQEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI + VAGIAMGL+K+GE V+LSD
Sbjct: 420 FPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKKSVAGIAMGLVKEGEDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTDDGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ ++++S+FAPR+ TIKI+P KI+DVIGKGG+ IR LTEET T I+I D+G + IA+
Sbjct: 540 ISSARDDISEFAPRIHTIKINPEKIKDVIGKGGAVIRALTEETETTIEIEDDGTVKIAAT 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ + A RIE LT V++G++YTG V R+ DFG + ++ K+GL+HISQ++ KR+
Sbjct: 600 DGEKAKAAIARIEALTAEVEVGRIYTGKVTRIVDFGCFVSVIGTKEGLVHISQVADKRIE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+++ Q+V+VKVL ID +GRI+LSM
Sbjct: 660 KVSDYVEMGQEVQVKVLEIDRQGRIRLSM 688
>gi|381394387|ref|ZP_09920104.1| polyribonucleotide nucleotidyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
gi|379329989|dbj|GAB55237.1| polyribonucleotide nucleotidyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
Length = 704
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/686 (52%), Positives = 495/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F+YG + +++E G IARQAT++V+ S++DT +L TVV K+ + NFFPLTV+Y
Sbjct: 4 ITKTFQYGQHTVTLETGVIARQATAAVMASMDDTTVLVTVVGRKEAKADQNFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP + NE+QI++ V+S NP+I
Sbjct: 64 EKTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPSAFKNEVQIIITVISANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY++ ++ILN T +L++S LDL+VAGT+
Sbjct: 124 PTDIISLIGTSAALAISGMPFSGPVGAARVGYVNNEFILNTRTSELEESKLDLVVAGTDS 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+++L A+++GHE+ + +NAI E VG + NW + L
Sbjct: 184 AVLMVESEADVLSEEVMLGAVVYGHEQSQTVVNAIKEFAAEVGTESWNWTAPEPNVALKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
KI I++ + KAYQI +K R ++ + + L ++ ++D +++ +L++LES
Sbjct: 244 KIKAIAQESMTKAYQISDKLARKDAVDVVTANARAELTTADD-SLDPKEVSELLHELESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TG+LPR HGS++FTRG+TQALVVATLGT RD Q
Sbjct: 303 VVRSRILAGEKRIDGRDPETIRGLHVATGLLPRAHGSAVFTRGETQALVVATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G + FMLHYN PP++ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDGLSGLSNNRFMLHYNFPPYSVGETGFVGSPKRREIGHGRLAKRGMQAVMPSAEEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K + V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+Q AL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEIMQKALKQAKEARLHILSVMDQAIGS 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S+FAPR+ IKI+ KIR+VIGKGG+ IR++TE+T T I+I D+G I I +
Sbjct: 543 HREEMSEFAPRIYVIKINSDKIREVIGKGGAVIRSITEDTDTNIEIEDDGTIKIFATEKT 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A RIE++T +++GK Y G V+R+ DFGA + +L GK+GL+HISQI+ +RV ++
Sbjct: 603 KADAAIARIEQVTAELEVGKTYHGKVMRIVDFGAFVEVLPGKEGLVHISQIAHERVAKVS 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+LKE Q V VKV+ ID + R++LSM
Sbjct: 663 DYLKEGQAVDVKVMEIDRQNRVRLSM 688
>gi|332307057|ref|YP_004434908.1| polyribonucleotide nucleotidyltransferase [Glaciecola sp.
4H-3-7+YE-5]
gi|332174386|gb|AEE23640.1| polyribonucleotide nucleotidyltransferase [Glaciecola sp.
4H-3-7+YE-5]
Length = 703
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/686 (53%), Positives = 494/686 (72%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I KSF+YG + +++E G IARQAT++V+ S++DT +L +VV KD +FFPLTV+Y
Sbjct: 4 ITKSFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKDTKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAG+IPG FFKREG+PSE ET+ SRLIDRPIRPLFP+G++NE+QI+V V+S NP+I
Sbjct: 64 ERTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPDGFMNEVQIIVTVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY DG+Y+LN T +L+ S LDL+VAGT+
Sbjct: 124 PTDIISLIGTSAALAISGMPFNGPVGAARVGYTDGQYVLNTRTSELETSQLDLVVAGTKG 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++ L ED++L A+++GHE+M+ +NA+ E V K +W + +L
Sbjct: 184 AVLMVESEAEVLSEDVMLGAVMYGHEQMQTVVNAVTEFAAEVNTPKWDWVAEPANVSLKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
KI ++E ++ +AYQI +K R ++ +++++ + D +++ +L++LES
Sbjct: 244 KIKALAEAEMTEAYQISDKMARKDAIVALTDKTVAAIVEADEEQ-DAKEVSELLHELESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR + + TGILPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGQPRIDGRDPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDGLNGKEDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
++E+S+FAPR+ T+KID KIRDVIGKGG+ IR +TE + T I+I D+G I I +
Sbjct: 543 HRDEMSEFAPRIYTLKIDQDKIRDVIGKGGAMIRAITEASDTNIEIEDDGTIKIFATERA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
A +IE++T V+ GK Y G V R+ DFGA + IL GK+GL+HISQI+ +RVN +
Sbjct: 603 KADIAISKIEQVTADVEAGKTYEGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E Q + VKV+ ID + R++LS+
Sbjct: 663 DHLSEGQIINVKVMEIDRQNRVRLSI 688
>gi|27904826|ref|NP_777952.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Bp (Baizongia pistaciae)]
gi|38605103|sp|Q89AF8.1|PNP_BUCBP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27904224|gb|AAO27057.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Bp (Baizongia pistaciae)]
Length = 693
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/695 (53%), Positives = 517/695 (74%), Gaps = 11/695 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++VL S++DT + TVV K + FFP+T
Sbjct: 1 MLNPIVRKFQYGQHIVTLETGIMARQATAAVLTSMDDTTVFVTVVGQKKLQTEQKFFPMT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPG FF+REG+PSE E +I+RLIDRPIRPLFP+ + NE+QI+ V+S+
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSENEILIARLIDRPIRPLFPKRFFNEVQIIATVVSL 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI +IIG S ALSIS +PFLGP+G A++GYI+ +YILNP ++K S LDL+++
Sbjct: 121 NPQVNPDIVAIIGASAALSISGMPFLGPIGAARIGYINNQYILNPNVNEIKSSSLDLIIS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD----PI 299
GTE++++ VE+E+ L E+ I+NAI +GHE+ KI I I + V K W+ P+
Sbjct: 181 GTEESVLMVEAEANMLTEEQIINAINYGHEQQKIVIKNIEHFAKKV--KIPVWEQCLYPV 238
Query: 300 VKDKTLISKIINISEHKIRKAYQIKNKQIR-DLTFKNISKDIYSSLIDNENLTIDINDIN 358
D L +II ISE +I KAY I +K IR D+ K SK I +I +E ID +I
Sbjct: 239 NDD--LEKRIIEISEQEIVKAYNIFDKVIRLDVLDKIKSKAI--EIIISEYSGIDEFEIT 294
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
I+ ++E KI+R ++L +RID R ++IR + +RTG+LPR HGS+LFTRG+TQ+LV
Sbjct: 295 SIISNIERKIVRNRVLKNRIRIDGRNKDEIRTLDVRTGVLPRVHGSALFTRGETQSLVSV 354
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGTSRD Q +D L+G+ TD+F+ HYN PP+A G+IG +G PKRREIGHG+LAKR++L V
Sbjct: 355 TLGTSRDAQNLDELLGDKTDNFLFHYNFPPYAVGEIGMVGSPKRREIGHGKLAKRSILAV 414
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
+P + F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPIS +AGIAMGLIK+G+
Sbjct: 415 MPKLDLFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPISNAIAGIAMGLIKEGDD 474
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
V+L+DILGDED GDMDFK++G+ GITALQMDIK+ GIT +I+++ALY+AK +IL
Sbjct: 475 FVVLTDILGDEDHLGDMDFKISGSKKGITALQMDIKVKGITNEIMKLALYQAKNARIHIL 534
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
MK + + ++S FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G
Sbjct: 535 NIMKKSLNVPRKDISIFAPRIHTIKINPEKIKDVIGKGGSVIRMLTEETGTTIEIEDDGT 594
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
+ I++ + A +RI+++T V++G VYTG V R+ DFGA + I GK+GL+HISQI
Sbjct: 595 VKISAVMQEKAKCAIQRIKEITAEVEVGSVYTGKVTRIVDFGAFVSIGIGKEGLVHISQI 654
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ KRV+ ++D L+ +Q++ VKVL +D +GR++LS+
Sbjct: 655 AHKRVDKVSDHLRLHQEIFVKVLEVDRQGRLRLSI 689
>gi|384123656|ref|YP_005506276.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D106004]
gi|420548618|ref|ZP_15046411.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-01]
gi|420596824|ref|ZP_15089711.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-10]
gi|420604426|ref|ZP_15096491.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-12]
gi|420644845|ref|ZP_15132824.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-29]
gi|420682347|ref|ZP_15166674.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-47]
gi|420698732|ref|ZP_15181129.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-53]
gi|420731889|ref|ZP_15209881.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-60]
gi|420786100|ref|ZP_15257413.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-89]
gi|420791155|ref|ZP_15261956.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-90]
gi|420849841|ref|ZP_15314846.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-102]
gi|420855526|ref|ZP_15319648.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-103]
gi|420860630|ref|ZP_15324147.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-113]
gi|262363252|gb|ACY59973.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D106004]
gi|391422343|gb|EIQ84928.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-01]
gi|391470228|gb|EIR27914.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-10]
gi|391482278|gb|EIR38733.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-12]
gi|391518215|gb|EIR70946.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-29]
gi|391551325|gb|EIS00847.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-47]
gi|391567253|gb|EIS15137.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-53]
gi|391596344|gb|EIS40290.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-60]
gi|391654175|gb|EIS91038.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-89]
gi|391659514|gb|EIS95789.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-90]
gi|391723620|gb|EIT53286.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-102]
gi|391724075|gb|EIT53690.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-103]
gi|391727028|gb|EIT56302.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-113]
Length = 664
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/648 (55%), Positives = 486/648 (75%), Gaps = 1/648 (0%)
Query: 106 TVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPL 165
TVV K +FFPLTV+Y E+ YAAGRIPGSFF+REG+PSE ET+ SRLIDRPIRPL
Sbjct: 2 TVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPL 61
Query: 166 FPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYI 225
FP+ +LNE+Q++ V+SVNPQI+PDI ++IG S ALS+S +PF GP+G A+VG+I+ +Y+
Sbjct: 62 FPDSFLNEVQVIATVVSVNPQINPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYV 121
Query: 226 LNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINEL 285
LNPTT++LK+S LDL+VAGT A++ VESE+ L E+ +L A++FGHE+ ++ I IN L
Sbjct: 122 LNPTTDELKESRLDLVVAGTAGAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINAL 181
Query: 286 VQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI 345
V G+ K +W ++ L +++ ++E ++ AY+I KQ R I D+ +L+
Sbjct: 182 VAEAGKPKWDWQAEPVNEALHARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEALL 241
Query: 346 DNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSS 405
++ T+D +I IL +E ++R ++L RID R + IR + +RTGILPRTHGS+
Sbjct: 242 AQDD-TLDAAEIQDILASVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSA 300
Query: 406 LFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREI 465
LFTRG+TQALV ATLGT+RD Q ID LMGE TDSF+LHYN PP+ G+ G +G PKRREI
Sbjct: 301 LFTRGETQALVTATLGTARDAQNIDELMGERTDSFLLHYNFPPYCVGETGMVGSPKRREI 360
Query: 466 GHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHV 525
GHGRLAKR +L V+P+ ++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI V
Sbjct: 361 GHGRLAKRGVLAVMPSASEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAV 420
Query: 526 AGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQI 585
AGIAMGL+K+G+ V+LSDILGDED GDMDFKVAG+ +G+TALQMDIKI GIT +I+Q+
Sbjct: 421 AGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQV 480
Query: 586 ALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTE 645
AL +AK +IL M+ + + ++S+FAPR+ T+KI+P KI+DVIGKGGS IR LT+
Sbjct: 481 ALNQAKGARLHILGVMEQAISTPRGDISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTD 540
Query: 646 ETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRI 705
ETGT I+I D+G I IA+ + + A RRIE++T +++G++Y G V R+ DFGA + I
Sbjct: 541 ETGTTIEIEDDGTIKIAATDGDKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAI 600
Query: 706 LSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
GK+GL+HISQI+ KRV +TD+L+ Q V VKV+ +D +GRI+LS+
Sbjct: 601 GGGKEGLVHISQIADKRVEKVTDYLQMGQDVPVKVMEVDRQGRIRLSI 648
>gi|116515160|ref|YP_802789.1| polynucleotide phosphorylase [Buchnera aphidicola BCc]
gi|122285444|sp|Q057K3.1|PNP_BUCCC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116257014|gb|ABJ90696.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola BCc]
Length = 693
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/691 (56%), Positives = 506/691 (73%), Gaps = 2/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ II FKYG + I +E G IARQAT+SVL S++DT +L T+VS FFPL
Sbjct: 1 MLKPIIHKFKYGKHNIILETGVIARQATASVLASMDDTTVLITIVSDNTTIPGQKFFPLV 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPG FF+REG+PSE E +ISRLIDRPIRPLFP+ +L E+QI+ V+SV
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPSENEILISRLIDRPIRPLFPKDFLYEVQIIATVISV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI SIIG S AL +S LPFLGP+G A++G+++ KYILNP+ E++KKS LDL+V+
Sbjct: 121 NPQINPDIISIIGSSAALCLSGLPFLGPIGAARIGFLNNKYILNPSIEKIKKSSLDLVVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVK-D 302
GT+ I VE+E+ L ED ILNAI+FGHE + I+ I + + I K D
Sbjct: 181 GTKNTIFMVEAEASILSEDNILNAILFGHESQQSLIDNIYLFSDKANKIPNIYKNIYKPD 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
K + + I + I KAY I K+ R +I + + S L++N++ + + I +Y
Sbjct: 241 KQIFNLISKKIKKDINKAYYILKKKERLKKLNDIKQKVTSELLNNDS-QLTSSKIEESIY 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE I+RK+IL LRID R N++R I +RTGILPR HGS+LFTRG+TQALV ATLGT
Sbjct: 300 FLERNIVRKRILKGKLRIDGRINNEVRKIDVRTGILPRVHGSALFTRGETQALVSATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRD Q +D L+G+ TD+F+ HYN PP++ G+IG +G PKRREIGHG+LAKR+ L V+PN
Sbjct: 360 SRDAQNLDDLLGDRTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGKLAKRSFLAVMPNI 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F Y+IRLVSEITESNGSSSMASVCG LAL+DAGVPI +AGIAMGLIK+ + +IL
Sbjct: 420 EDFPYTIRLVSEITESNGSSSMASVCGASLALMDAGVPIKSAIAGIAMGLIKENDSYIIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKV+G+ GITALQMDIK+ GIT DII+ ALY+AK IL+ M+
Sbjct: 480 SDILGDEDYLGDMDFKVSGSRLGITALQMDIKVSGITSDIIRSALYQAKSARLKILDIME 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++SKFAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+GI+ I+
Sbjct: 540 NTLQIPRSDISKFAPRIYTIKINPEKIKDVIGKGGSIIRMLTEETGTVIEIKDDGIVKIS 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ N + A +RI+++TE +QIGK+Y+G V R+ DFGA + I GK+GL+HISQIS+KR
Sbjct: 600 AINGEKAKYAIKRIQEITEDIQIGKIYSGKVTRILDFGAFVSIGFGKEGLIHISQISNKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++ + + LK NQ + VKVL +D +GRI+LSM
Sbjct: 660 IDKVINHLKINQIIFVKVLEVDRQGRIRLSM 690
>gi|7716531|gb|AAF68421.1|AF237935_1 polynucleotide phosphorylase [Pasteurella multocida]
Length = 684
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/661 (55%), Positives = 482/661 (72%), Gaps = 2/661 (0%)
Query: 95 LVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETII 154
+ S++DT + TVV+ KD +FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I
Sbjct: 1 MASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLI 60
Query: 155 SRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGV 214
+RLIDRPIRPLFPEG+ NEIQIV V+SVNPQI PD+ ++IG S ALS+S +PF GP+G
Sbjct: 61 ARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGA 120
Query: 215 AKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEK 274
A+VG+ID +++LNPT + K+S LDL+VAGT+KA++ VESE+ L E+ +L A++FGH++
Sbjct: 121 ARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHQQ 180
Query: 275 MKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFK 334
++ I+AI E G+ + +W + LI K+ I+E ++ +AY+I KQ R
Sbjct: 181 QQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKVKAIAEARLGEAYRITEKQARYEQID 240
Query: 335 NISKDIYSSLIDNENLTIDIND--INCILYDLESKIIRKQILDKGLRIDNRGVNDIRPIS 392
I D+ + + DI++ I I LES+I+R +I+ RID R V+ +R +
Sbjct: 241 AIKADVIAQITAEVAEGEDISEGKIVDIFTALESQIVRSRIIAGEPRIDGRTVDTVRALD 300
Query: 393 IRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATG 452
I TG+LPRTHGS++FTRG+TQAL VATLGT RD Q ID L GE +D F+ HYN PP++ G
Sbjct: 301 ICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVG 360
Query: 453 DIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCL 512
+ G IG PKRREIGHGRLAKR + V+P +F Y +R+VSEITESNGSSSMASVCG L
Sbjct: 361 ETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASL 420
Query: 513 ALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMD 572
AL+DAGVPI VAGIAMGL+K+ EK V+LSDILGDED GDMDFKVAGT G+TALQMD
Sbjct: 421 ALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMD 480
Query: 573 IKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDV 632
IKI GIT +I+QIAL +AK +IL M+ +P + ++S FAPR+ T+KIDP KI+DV
Sbjct: 481 IKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDV 540
Query: 633 IGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGI 692
IGKGG+TIR LTEETGT IDI+D+G + IA+ + S +E RIE +T V+ G VY G
Sbjct: 541 IGKGGATIRALTEETGTSIDIDDDGTVKIAAVDGNSAKEVMARIEDITAEVEAGAVYKGK 600
Query: 693 VLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
V RL DFGA + I+ K+GL+HISQI+ +RV ++D+L Q+V VKV+ ID +GRI+L+
Sbjct: 601 VTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLT 660
Query: 753 M 753
M
Sbjct: 661 M 661
>gi|160872287|ref|ZP_02062419.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Rickettsiella
grylli]
gi|159121086|gb|EDP46424.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Rickettsiella
grylli]
Length = 712
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/699 (54%), Positives = 509/699 (72%), Gaps = 16/699 (2%)
Query: 64 LFNKIIKSF-KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPT-STYNFFP 121
+F+K IK ++GS +I +E G+IARQAT+SVLVS+ +L TVV K T +FFP
Sbjct: 8 IFSKSIKKVVQFGSEEIILETGKIARQATASVLVSVGGVTVLVTVVGNKRQTDENRDFFP 67
Query: 122 LTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVL 181
LTV Y E+ YAAGRIPG +FKREG+PSE+E + SRLIDRPIRPLFPEG+ NE+Q+V VL
Sbjct: 68 LTVQYQERTYAAGRIPGGYFKREGRPSEKEILTSRLIDRPIRPLFPEGFYNEVQVVATVL 127
Query: 182 SVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLL 241
S P I+PDI ++IG S AL++S LPF P+ +VGY DG+YILNP+ ++L+ S LDL+
Sbjct: 128 SSTPDINPDIPALIGASAALALSGLPFKEPIAAVRVGYADGQYILNPSMKELETSDLDLV 187
Query: 242 VAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVK 301
VA TEKA++ VES++ +L E+I+L AI+FGH++M+ I +I EL + K WD
Sbjct: 188 VAATEKAVLMVESQAAELSEEIMLKAILFGHQQMQGVIQSIKELA--IEASKPAWDI--- 242
Query: 302 DKTLIS-------KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDI 354
KTL+S II + + +AYQI K +R I ++ + +D E I
Sbjct: 243 -KTLVSMDAHVEQAIIQSIDTSLTEAYQIPEKFMRKFKLDEIRENTMAQWLDEEK-GITA 300
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
I +L E KI+R +IL RID R +RPI+I G LPRTHGS+LFTRG+TQA
Sbjct: 301 KAIQFVLEKREEKIVRSRILSGQSRIDGRDKKAVRPITIEPGFLPRTHGSALFTRGETQA 360
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
LVV TLGT RD Q ++AL GE ++FMLHYN PP++ G+ G+IG PKRREIGHG LAKRA
Sbjct: 361 LVVTTLGTDRDAQTVEALDGEGRETFMLHYNFPPYSVGETGQIGSPKRREIGHGNLAKRA 420
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
L VLP+ + F Y +R+VSEITESNGSSSMA+VCG +AL+DAGVP+ +HVAGIAMGLIK
Sbjct: 421 LRAVLPSESDFPYVLRVVSEITESNGSSSMATVCGASVALMDAGVPLKKHVAGIAMGLIK 480
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+GE+ +L+DILGDED GDMDFKVAGTV+G+TALQMDIKI GIT +I+++AL +A++G
Sbjct: 481 EGEQFAVLTDILGDEDHLGDMDFKVAGTVDGVTALQMDIKIEGITEEILKVALNQAREGR 540
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+IL MK + + + E+S +APR+ T+KI+P KIRD+IGKGG+TIR +TEETGT IDI+
Sbjct: 541 LHILSIMKEALAEPRIEVSPYAPRITTLKINPEKIRDLIGKGGATIRAITEETGTLIDIS 600
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
D+G++ I++ +S + Q A RI K+T V++G +Y G +++L DFGA + +L G+DGL+H
Sbjct: 601 DDGMVRISTSDSQACQNAIERIRKVTAEVEVGCIYEGAIVKLTDFGAFVNVLPGRDGLVH 660
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
ISQIS +RV ++D L E Q V+VKVL ID +GRI+L+M
Sbjct: 661 ISQISKERVEQVSDVLSEGQIVKVKVLEIDRQGRIRLTM 699
>gi|297180954|gb|ADI17157.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [uncultured gamma proteobacterium
HF0070_08D07]
Length = 695
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/689 (51%), Positives = 503/689 (73%), Gaps = 1/689 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K+F YG ++ IE +IA+Q + + LVSI TV++ TVV K +FFPLTV
Sbjct: 1 MNPIKKTFVYGHDEVVIETNKIAKQTSGTALVSIGGTVVMTTVVGAKSARPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EKAYAAG+IPG FF+REG+PSE+ET+ SRLIDRPIRPLFP+ ++NE+Q+V VLS +
Sbjct: 61 NYQEKAYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKSFMNEVQVVCTVLSTD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
DPDIA++IG S AL+IS LPF GP+G A+VGY DG Y+LNP E LK L+++VAG
Sbjct: 121 KDQDPDIAAMIGTSAALAISGLPFEGPIGAARVGYKDGAYLLNPGYEALKDGDLNMMVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE+A++ VESE+K+L ED +L A+++GH++M++ I++I E ++G ++ W P ++
Sbjct: 181 TEEAVLMVESEAKELSEDQMLGAVLYGHQEMQVVISSIKEFAADLGVQESVWAPPQENSE 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
+ ++ I ++ +AY+I +K R +++ + + +S + ++N + D+ L
Sbjct: 241 SVVRVNEIVNTELGEAYKIVDKLERQNAVQSLKEKLLASALSDDN-GLSEGDLLSAFSKL 299
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E ++R+++L+ RID R + +R I + G+LP+THGS+LFTRG+TQALVVATLGT R
Sbjct: 300 EKSLVRERVLNGEPRIDGRDLKTVRAIEVEVGVLPKTHGSALFTRGETQALVVATLGTLR 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D IDAL G + D FMLHYN PP++ G+ G +G PKRRE+GHG+LA+R + VLP+ ++
Sbjct: 360 DAAIIDALEGTYKDQFMLHYNFPPYSVGETGMMGGPKRREVGHGKLARRGVSAVLPDPDE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP++ VAG+AMGL+K+G + +L+D
Sbjct: 420 FPYTLRVVSEITESNGSSSMASVCGTSLALMDAGVPLAAPVAGVAMGLVKEGNRYAVLTD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAG+ G+TALQMDIKI GIT +I+++AL +A + +ILE+M
Sbjct: 480 ILGDEDHLGDMDFKVAGSSKGVTALQMDIKISGITEEIMEVALSQAYEARLHILEQMNKV 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + + LS+ AP + T+K+ P KIRD+IGKGG+TIR++ EETG ++DI+D+G++ I +
Sbjct: 540 ISQSRESLSENAPSMETMKVHPDKIRDIIGKGGATIRSIVEETGAEVDIDDDGLVRIYAE 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N S A +IE++T ++GK+Y G V R+ DFGA + IL GKDGLLHISQI+ +RV
Sbjct: 600 NGASKDAAVNKIEEITAEAEVGKIYDGKVARIVDFGAFVTILPGKDGLLHISQIADERVE 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E QKV V VL +D RGRIKLS+
Sbjct: 660 SVTDYLSEGQKVEVVVLDLDQRGRIKLSI 688
>gi|359783681|ref|ZP_09286892.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas
psychrotolerans L19]
gi|359368385|gb|EHK68965.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas
psychrotolerans L19]
Length = 700
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/690 (53%), Positives = 480/690 (69%), Gaps = 2/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N +IK FK+G ++E G IARQAT +VLVS ED +L TVV K P +FFPL+V
Sbjct: 1 MNPVIKQFKFGEQTFTLETGRIARQATGAVLVSTEDVSVLVTVVGAKQPAVGKDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YAAGRIPG +FKREG+PSE+ET+ SRLIDRPIRPLFPEG+LNE+Q+V V+S N
Sbjct: 61 HYQEKTYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVVCTVVSTN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S AL+IS +PF GP+ A+VGY + Y+LNP+ EQL+ S LD++VA
Sbjct: 121 KKSDPDIAAMIGTSAALAISGIPFAGPIAAARVGYHSELGYLLNPSYEQLQSSSLDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ +L ED +L ++F HE+ ++AI AI++ G+ NW ++
Sbjct: 181 GTRDAVLMVESEADELTEDQMLGGVLFAHEEFQVAIEAISQFAAEAGKPTWNWQAPAENT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ + + +AY I KQ R + +D + + EN ++
Sbjct: 241 ALVEAVKAEVGEAVSRAYTITIKQDRYAALGAL-RDQAIAKLAGENGQYSEAEVKETFGL 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R+ I+D RID R +RP+ I G L +THGS+LFTRG+TQALV ATLGT+
Sbjct: 300 LEYRTVRQNIVDGKPRIDGRDTRTVRPLQIEVGTLKKTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L GE DSFMLHYN PPF+ G+ GR+G P RREIGHGRLA+R + +LP
Sbjct: 360 RDAQLLDTLEGERRDSFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGIQAMLPTQE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F YSIR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L+
Sbjct: 420 AFPYSIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALEQALEARLNILGQMNQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + ELS+ AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 VISESRAELSENAPTMLAMKIDQDKIRDVIGKGGATIRGICEETKASIDIEDDGTIKIYG 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS +R+
Sbjct: 600 ETREAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRI 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 660 EKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 689
>gi|269961984|ref|ZP_06176339.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
gi|269833307|gb|EEZ87411.1| polyribonucleotide nucleotidyltransferase [Vibrio harveyi 1DA3]
Length = 660
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/659 (53%), Positives = 486/659 (73%), Gaps = 2/659 (0%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G IARQAT++V+V+++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP+ + NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI ++IG S AL+IS +PF GP+G A+VG+IDG+ +LNP+ +L+ S LDL+V
Sbjct: 121 VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ L E+ +L+A+++GH++ + INAINE V +W ++
Sbjct: 181 AGTESAVLMVESEADNLTEEEMLSAVVYGHDQQQTVINAINEFAAEVATPAWDWVAPEEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++KI ++E K+ +AYQI K R I+ ++ L+ E+ + +I+ I +
Sbjct: 241 TALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLL-AEDPEANTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGSSLFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHG+LAKR + V+P+
Sbjct: 360 QRDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+L
Sbjct: 420 DEFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +A+ +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 EAISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
+ + +EA RRIE++T V++G++YTG V RL DFGA + +L GKDGL+HISQI+ K
Sbjct: 600 ATEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIARK 658
>gi|372273051|ref|ZP_09509099.1| polynucleotide phosphorylase/polyadenylase [Marinobacterium
stanieri S30]
Length = 700
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/690 (52%), Positives = 490/690 (71%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
I K+F++G ++++IE G++ARQAT SV+VS+ +L TVV K+ +FFPL+V
Sbjct: 1 MQAISKTFQFGKHEVTIETGKVARQATGSVMVSMAGVQVLCTVVGAKEAREGQDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YA GRIPG FFKRE +PSE+ET+ SRLIDRPIRPLFP+GY+NE+Q++ V+S +
Sbjct: 61 HYQEKYYAVGRIPGGFFKREARPSEKETLTSRLIDRPIRPLFPKGYMNEVQVICTVMSAD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI-DGKYILNPTTEQLKKSHLDLLVA 243
DPDIA++IG S AL+IS +PFLGP+G A+VG+ D YILNPT E+L S LD++VA
Sbjct: 121 KVNDPDIAAMIGTSAALAISGIPFLGPIGAARVGFTEDQGYILNPTFEELATSELDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+++L ED +L A++F H++M++AINAINELV G+ K +W P K++
Sbjct: 181 GTNDAVLMVESEAQELTEDEMLGAVLFAHQEMQVAINAINELVAEAGKPKWDWQPAAKNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
TLI+++ + I AYQ+ +K R ++ +L +E ++ I
Sbjct: 241 TLIAQVRELVGEGIAAAYQVADKMQRQGALSDLRSKAVEALSGSEEGQPSDKEVAGIFSS 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +I+R +I+D RID R +R I + IL HGS+LFTRG+TQ++ TLGTS
Sbjct: 301 LEKEIVRNRIIDGQPRIDGRDNKTVRGIDVEIDILKGVHGSALFTRGETQSIATCTLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD+Q IDAL GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + VLP
Sbjct: 361 RDQQIIDALEGERKDPFMLHYNFPPYSVGEAGRMGATGRREIGHGRLARRGVAAVLPTQE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG L+++DAGVP+ VAGIAMGL+K+ ++ +L+
Sbjct: 421 EFPYTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKENDRFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + +IL++M
Sbjct: 481 DILGDEDHLGDMDFKVAGTEAGVTALQMDIKITGITEEIMEIALEQAHEARKHILKEMAK 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + EL AP + +KI+P KIRD+IGKGG+TIR LTEETG IDI D+G + I +
Sbjct: 541 VIGYARPELPDNAPAMQLLKINPEKIRDLIGKGGATIRALTEETGAMIDIEDDGTVRIYA 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ G+ A R+ +T +IGK+Y G V+R+ +FGA + IL GKDGL+HISQI+ +RV
Sbjct: 601 DDKAKGKAALDRVTAITAEAEIGKIYEGKVVRIEEFGAFVNILPGKDGLVHISQIAKERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N +TDF+ + ++VKVL +D RGRIKLSM
Sbjct: 661 NKVTDFVNMDDVIKVKVLDVDMRGRIKLSM 690
>gi|336233336|ref|YP_004590082.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola
(Cinara tujafilina)]
gi|335345277|gb|AEH39823.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola
(Cinara tujafilina)]
Length = 694
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/696 (55%), Positives = 510/696 (73%), Gaps = 12/696 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I+ F+YG + I++E G IARQAT+SVL S++DT +L T+VS FFPL
Sbjct: 1 MLNPIVHKFQYGQHTITLETGLIARQATASVLASMDDTTVLVTIVSGDSVLEGQKFFPLV 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPG FF+REG+P+E E ++SRLIDRPIRPLF + +LNE+QI V V+SV
Sbjct: 61 VNYQERTYAAGRIPGGFFRREGRPNENEILVSRLIDRPIRPLFSKDFLNEVQITVTVISV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQI+PDI SIIGVS+AL +S LP LGPLGVA+VGY + +Y LNP T+ +KKS LDL+V+
Sbjct: 121 NPQINPDIISIIGVSSALCLSGLPILGPLGVARVGYYNNQYFLNPQTDYIKKSLLDLIVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP----- 298
GT+++I+ VE+E++ L E I+N IIFGH+ K I I V +K N P
Sbjct: 181 GTKESILMVEAEARILSEKEIINGIIFGHKSQKKLIQEIL-----VFSEKANKFPNLRTL 235
Query: 299 IVKDKTLISKIINIS-EHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDI 357
+++ T + K+++ + + KI KAY+I K+ R I K++ L+ N N+ +D+ I
Sbjct: 236 LIQKNTELYKLVSKNVKSKIDKAYRILTKKERQKKLSKIKKNLIDHLLLN-NIDLDVAKI 294
Query: 358 NCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVV 417
LY LE IIR +IL RID R ++IRPI IRTG+L R HGS+LFTRG+TQALV
Sbjct: 295 EESLYLLERNIIRNRILKGHSRIDGRMYDEIRPIDIRTGLLLRAHGSALFTRGETQALVS 354
Query: 418 ATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP 477
ATLGTSRD Q +D L+G+ TD+F+ HYN PP++ G+IG +G PKRREIGHG+LAKR+LL
Sbjct: 355 ATLGTSRDAQNLDDLLGDRTDNFLFHYNFPPYSVGEIGVVGSPKRREIGHGKLAKRSLLA 414
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE 537
V+P +F Y+IR+VSEITESNGSSSMASVCGG LAL+DAG+PI + +AGIAMGLIK E
Sbjct: 415 VMPTIEEFPYTIRVVSEITESNGSSSMASVCGGSLALMDAGIPIKQSIAGIAMGLIKKDE 474
Query: 538 KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
VILSDILGDED GDMDFKVAG+ GITALQMDIKI G+T I++ +LY+AK I
Sbjct: 475 SYVILSDILGDEDYLGDMDFKVAGSRLGITALQMDIKIPGVTTKILKSSLYQAKLARFNI 534
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
L+ M++ + + E+SKFAPR+ TIKI P KI+DVIGKGGS IR LTEETGT I+I D+G
Sbjct: 535 LDIMESAINNPRKEISKFAPRIHTIKISPEKIKDVIGKGGSVIRMLTEETGTIIEIKDDG 594
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQ 717
+ I++ + A RRI+++T +++GK+Y+G V+R+ DFGA + I GK+GL+HISQ
Sbjct: 595 TVKISATIEEKAKHAIRRIQEITAEIKVGKIYSGKVIRILDFGAFVSIGLGKEGLIHISQ 654
Query: 718 ISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
IS+KRV + D LK +Q + VKVL ID +GR++LSM
Sbjct: 655 ISNKRVLKVIDHLKLDQIISVKVLEIDRQGRLRLSM 690
>gi|297180703|gb|ADI16912.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [uncultured gamma proteobacterium
HF0010_16J05]
Length = 718
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/693 (51%), Positives = 498/693 (71%)
Query: 61 GNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFF 120
G + N I K F++G +++IE +IA+QAT SV+V+I DTV+L TVV K +FF
Sbjct: 14 GVYNLNAITKQFQFGDQQVTIETNKIAKQATGSVVVTIGDTVVLTTVVGAKSARPGQDFF 73
Query: 121 PLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYV 180
PLTV+Y EK YAAG+IPG FF+REG+PSE+ET+ SRLIDRPIRPLFP+G++NE+QIV V
Sbjct: 74 PLTVNYQEKTYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQIVCTV 133
Query: 181 LSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDL 240
+S + DPDIA++IG S AL+IS +PF GP+G A+VGY+DG+Y+LNP + L+ S L++
Sbjct: 134 VSTDKNQDPDIAAMIGTSAALAISGIPFDGPIGAARVGYVDGQYLLNPGYDVLETSELNM 193
Query: 241 LVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIV 300
VAGT A++ VESE+K+L ED +L A++F H++M+ I A+ EL +G+ + +W P
Sbjct: 194 TVAGTASAVLMVESEAKELSEDQMLGAVLFAHQEMQAIITAVAELAGEIGKPRWDWQPEA 253
Query: 301 KDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCI 360
KD++L +++ + + AY+I +K R + + + L EN + +D+ +
Sbjct: 254 KDESLFAQVEGAVKSDLGDAYRISDKMERQERVRELRDSAVAQLTGAENASHSADDVAGV 313
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
+E ++R+++L+ RID R + +RPI + G+LP+ HGS+LFTRG+TQALVVATL
Sbjct: 314 FSKVEKDLVRQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATL 373
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT RD IDAL G + D+FMLHYN PP++ G+ G + PKRREIGHG+LA+R + LP
Sbjct: 374 GTLRDAALIDALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGHGKLARRGVSATLP 433
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
N+ F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAG+AMGL+K+G +
Sbjct: 434 NSEDFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPVKAPVAGVAMGLVKEGNRYA 493
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A + +IL +
Sbjct: 494 VLTDILGDEDHLGDMDFKVAGTATGVTALQMDIKIDGITEEIMEAALAQAFEARVHILGE 553
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + ELS AP ++T+ + P KIRD+IGKGG+TIR++ EETG ++DIND+G +
Sbjct: 554 MNKVISASREELSANAPAMVTLNVHPDKIRDIIGKGGATIRSIVEETGAEVDINDDGSVR 613
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I + + + A RI+++T ++G++Y G V R+ DFGA + IL GKDGLLHISQI+
Sbjct: 614 IYAEDGAAKDAAVNRIQEITAEAEVGRIYKGKVERIVDFGAFVNILPGKDGLLHISQIAE 673
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV +TD+L E Q+V V VL +D RGRIKLS+
Sbjct: 674 ERVENVTDYLSEGQEVEVVVLDVDQRGRIKLSI 706
>gi|372267468|ref|ZP_09503516.1| polynucleotide phosphorylase/polyadenylase [Alteromonas sp. S89]
Length = 705
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/691 (52%), Positives = 484/691 (70%), Gaps = 6/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+F+YG +++IE G +ARQAT + LV+I +TV+L TVV K+ FFPL+V
Sbjct: 1 MNPVTKTFQYGKDQVTIETGRVARQATGAALVTIGETVVLCTVVGAKEAKPDQGFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y+EKAYAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP G++NE+Q+++ VLS
Sbjct: 61 HYVEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGFMNEVQVMITVLSAE 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI--DGKYILNPTTEQLKKSHLDLLV 242
+DPDIA +IG S ALS+S +PF GP+G A+VGY DG YILNP LK+S LD++V
Sbjct: 121 KDVDPDIAGMIGTSAALSVSGIPFAGPIGAARVGYTEKDG-YILNPGYAALKESELDMVV 179
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+ +LPEDI+L A+++ H++M+ + EL G+ +W P +
Sbjct: 180 AGTKDAVLMVESEAAELPEDIMLGAVLYAHQEMQAVVTVCEELKAEAGKPTWDWQPEAVN 239
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ L S + K+ +AY+I +KQ R + + +D +
Sbjct: 240 EELKSALEAQFGEKVAEAYKITDKQARTTRLAELRN---EAAAALATEELDEGTVKSYFG 296
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE K +R ++ RID R +RPIS+ G+LP++HGS+LFTRG+TQALVV+TLG
Sbjct: 297 KLEKKTVRGAVVRGEPRIDGRDTKTVRPISVEVGVLPKSHGSALFTRGETQALVVSTLGA 356
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q IDAL GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + VLPN
Sbjct: 357 TRDAQIIDALEGERKDYFMLHYNFPPYSVGEAGRVGATGRREIGHGRLARRGIAAVLPNP 416
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ E +L
Sbjct: 417 EEFPYTLRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDEGFAVL 476
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++ AL +A +IL +M
Sbjct: 477 TDILGDEDHLGDMDFKVAGTASGVTALQMDIKIEGITEEIMETALEQALHARLHILAEMN 536
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +++ APR T+KI P KIRDVIGKGG+TIR++TEETG IDI D+G + +
Sbjct: 537 KVIGASREVVNENAPRYATLKIHPDKIRDVIGKGGATIRSITEETGASIDIEDDGSVKVF 596
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ S + A RIE++T +IG +Y G V+R+ DFGA + L GKDGL+HISQI+ +R
Sbjct: 597 GEDGESLEAAVTRIEEITAEAEIGAIYEGKVVRIVDFGAFVNFLPGKDGLVHISQIAEER 656
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN +TD+L E Q V+VKVL +D RGRIKLS+
Sbjct: 657 VNAVTDYLSEGQMVKVKVLDVDQRGRIKLSI 687
>gi|383936867|ref|ZP_09990286.1| polyribonucleotide nucleotidyltransferase [Rheinheimera nanhaiensis
E407-8]
gi|383702104|dbj|GAB60377.1| polyribonucleotide nucleotidyltransferase [Rheinheimera nanhaiensis
E407-8]
Length = 709
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/692 (54%), Positives = 508/692 (73%), Gaps = 10/692 (1%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+KSF +G + ++E G IARQA ++VL S+ DT +L TVV K+ +FFPLTV+Y
Sbjct: 4 IVKSFPFGQHTFTLETGVIARQADAAVLASLGDTSVLVTVVGKKEAKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NE+Q+V V+SV P+I
Sbjct: 64 EKMYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFTNEVQVVATVVSVQPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PDI ++IG S AL+IS +PF GP+G A+VGYI+ +Y+LNP+ ++LK S LDL+VAGT
Sbjct: 124 QPDIVALIGTSAALAISGIPFSGPIGAARVGYINNQYVLNPSEDELKSSKLDLVVAGTAG 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L ED++L A+++GHE+M+ AI AINE + NW K+ LI
Sbjct: 184 AVLMVESEAGILSEDVMLGAVVYGHEQMQTAIAAINEFAAQAAKPAWNWQAPEKNVALIE 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID------NENLTIDINDINCIL 361
KI +++ + AY+I K R ++ I +I ++LI+ E+ +D+ ++ I
Sbjct: 244 KIEALAKADLGDAYRITEKAKR---YERIG-EIKAALIEKLTAELGEDDKLDLLEVGEIF 299
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
++LESK++R +I RID R IR +S+ TG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 300 HNLESKVVRGRITKGEPRIDGRDPEMIRGLSVMTGVLPRTHGSALFTRGETQALVTATLG 359
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q +D L+ TD+FMLHYN PP++ G+ G IG PKRREIGHGRLAKR + V+P+
Sbjct: 360 TARDAQTVDDLLSAKTDTFMLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVQAVMPD 419
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
N F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+
Sbjct: 420 FNDFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEGDDFVV 479
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTAEGITALQMDIKIDGITKEIMQIALKQAKAARLHILNVM 539
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + E+S++APR+ T+KI+P KIR+VIGKGG+ IR +TEE+GT I++ D+G I I
Sbjct: 540 DQAISGHREEMSEYAPRIYTMKINPEKIREVIGKGGAVIRQITEESGTTIELEDDGSIKI 599
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + Q A +I +T +++G VY G V+R+ DFGA + +L GKDGL+HISQIS +
Sbjct: 600 AATTAKAAQIAIDKINAITAEIEVGAVYDGEVVRIVDFGAFVNVLPGKDGLVHISQISDE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RVN +++ L QKV+VKVL +D +GR++LS+
Sbjct: 660 RVNNVSEHLTLGQKVKVKVLEVDKQGRVRLSI 691
>gi|410612391|ref|ZP_11323470.1| polyribonucleotide nucleotidyltransferase [Glaciecola psychrophila
170]
gi|410168131|dbj|GAC37359.1| polyribonucleotide nucleotidyltransferase [Glaciecola psychrophila
170]
Length = 705
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/688 (52%), Positives = 491/688 (71%), Gaps = 5/688 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F+YG + +++E G IARQAT++V+ S++DT +L +VV KD +FFPLTV+Y
Sbjct: 4 ITKTFQYGQHTVTLETGVIARQATAAVMASMDDTCVLVSVVGKKDTKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAG+IPG FFKREG+PSE ET+ SRLIDRPIRPLFP G++NE+QI++ V+S NP+I
Sbjct: 64 EKTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPNGFMNEVQIIITVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY D KY+LN T +L+ S LDL+VAGT+
Sbjct: 124 PTDIISLIGASAALAISGMPFNGPIGAARVGYTDEKYVLNTRTSELEASQLDLVVAGTKN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+++L A+++GHE+++ I AI E V NW + ++ L +
Sbjct: 184 AVLMVESEADILSEEVMLGAVMYGHEQLQTVIGAIAEFAAEVNTPSWNWQGVPENTALKT 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLE 365
K+ ++E + +AYQI +K R ++ +++ D E + +++ +++ LE
Sbjct: 244 KVKELAEAGMTEAYQISDKMERKDAINALTSQTVETIVAGDAEQ---NAKEVSEMMHTLE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
S ++R +IL RID R IR +++ TG+LPRTHGS+LFTRG+TQA+V ATLGT RD
Sbjct: 301 SDVVRSRILAGQPRIDGRDPAMIRALNVATGLLPRTHGSALFTRGETQAIVAATLGTERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q ID L G+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ F
Sbjct: 361 AQMIDGLSGKTDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEQDF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+KD E V+LSDI
Sbjct: 421 PYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKDDENFVVLSDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAI 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ E+S+FAPR+ +K+D KIRDVIGKGG+ IR +TE + I+I D+G + I +
Sbjct: 541 SGHREEMSEFAPRIYKMKVDKDKIRDVIGKGGAMIRAITEASECNIEIEDDGTVKIFATE 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
Q A +IE++T V+ GK Y+G V R+ DFGA + IL GK+GL+HISQI+ +RVN
Sbjct: 601 LAKAQIAIAKIEQVTAEVESGKTYSGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++DFL+E Q + VKV+ ID + RI+LS+
Sbjct: 661 VSDFLEEGQVLDVKVVEIDRQNRIRLSI 688
>gi|386288000|ref|ZP_10065166.1| polynucleotide phosphorylase/polyadenylase [gamma proteobacterium
BDW918]
gi|385278979|gb|EIF42925.1| polynucleotide phosphorylase/polyadenylase [gamma proteobacterium
BDW918]
Length = 708
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/691 (51%), Positives = 492/691 (71%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+F++G +++E G IARQA+ +VLV+I+ T +L TVV+ K +FFPL+V
Sbjct: 1 MNPVTKTFQWGGQTVTLETGRIARQASGAVLVTIDQTQVLCTVVAAKSAKPGQDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y E+ YA G+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFP+G+ NE+Q++ V+S +
Sbjct: 61 HYQERTYAVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPKGFQNEVQVICTVMSAD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI--DGKYILNPTTEQLKKSHLDLLV 242
DPDIA++IG S AL+IS PF GP+G A+VG+ DG YILNPT EQLK S LD++V
Sbjct: 121 KVNDPDIAALIGTSAALAISGAPFAGPVGAARVGFTAEDG-YILNPTFEQLKTSMLDMVV 179
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+KQL ED +L +++ H++M+ I AI EL + G+ +W P ++
Sbjct: 180 AGTQDAVLMVESEAKQLTEDQMLGGVLYAHQEMQAVIQAIKELAADAGKPSWDWQPEAEN 239
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ + + + AY+I +K +R + + ++L EN +D+ +
Sbjct: 240 TALLGAVAEGFKAGLGDAYRITDKMLRYAKVSELRNEAIAALATGENAQYSADDVKGVFA 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE +I+R++IL+ RID R +RPI++ G+L + HGS+LFTRG+TQA+ VATLGT
Sbjct: 300 KLEKQIVRQRILNGEPRIDGRDGRTVRPINVEVGVLGKAHGSALFTRGETQAIGVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
SRD Q +DAL GEF D F+LHYN PP++ G+ GR+G RREIGHGRLA+R+L VLP+
Sbjct: 360 SRDGQFVDALQGEFKDHFLLHYNFPPYSVGECGRMGSTGRREIGHGRLARRSLEAVLPSV 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y+IR+VSEITESNGSSSMASVC G L+L+DAGVP+ VAGIAMGL+K+GE+ +L
Sbjct: 420 EEFPYTIRVVSEITESNGSSSMASVCVGSLSLMDAGVPLKAPVAGIAMGLVKEGERFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT I+++AL +A++ IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTADGVTALQMDIKIEGITQKIMEVALEQAQQARLLILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S AP + +K+D KIRD+IGKGG+TIR + EETG QIDI D+G + +
Sbjct: 540 QILASSRSDVSDNAPSMHVMKVDSDKIRDIIGKGGATIRAMCEETGAQIDIEDDGTVRVY 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
++ S +A RI +T ++G +YTG V R+ DFGA + IL GKDGL+HISQIS +R
Sbjct: 600 GSDAASRDDAVNRILAITAEAEVGAIYTGKVARIVDFGAFVTILPGKDGLVHISQISDER 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q V+VKVL +D RGRIKLS+
Sbjct: 660 VENVSDYLTEGQDVQVKVLDVDARGRIKLSI 690
>gi|407801051|ref|ZP_11147895.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax sp. W11-5]
gi|407024488|gb|EKE36231.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax sp. W11-5]
Length = 697
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/691 (52%), Positives = 479/691 (69%), Gaps = 1/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F+YG + +E G IARQAT +V+V+I +T +L T V K+ FFPLT
Sbjct: 1 MFNTVRKEFQYGRDTVVLETGRIARQATGAVMVTIGETAVLVTAVGKKEADPNKGFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG FFKREG+PSE+ET+ RLIDRPIRPLFP+G++NE+QI+ V+S
Sbjct: 61 VNYQEKTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQIIATVMSA 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA+++G S AL+IS +PF GPLG A+VG+I+ Y+LNP +LK S LDL+VA
Sbjct: 121 DKDADPDIAALLGTSAALAISGIPFAGPLGAARVGFINDMYVLNPRYSELKDSALDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH +M+ AI AI E G+ + +W P +
Sbjct: 181 GTEAAVLMVESEAKELTEDQMLGAVLFGHMEMQAAIKAIGEFAAEAGKPQWDWQPAATNT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ + +AY I +KQ R ++ + + E D +++ +
Sbjct: 241 ALYEQVKARFAGAVAEAYTITDKQQRYTRLGDLKNEAVEAFATGEEGAPDKGEVSALFGK 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +R+ ++ RID R +N +RPI+I G LP+ HGS+LFTRG+TQA+VVATLG
Sbjct: 301 LEKATVREAVVSGKPRIDGRALNTVRPINIEAGGLPKAHGSALFTRGETQAIVVATLGGM 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL G D FMLHYN PP+ G+ G +G PKRREIGHGRLA+R + VLPN
Sbjct: 361 RDAQLIDALEGSRQDRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLARRGVQAVLPNEQ 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE-KVVIL 542
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ + + +L
Sbjct: 421 EFPYAIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLVKEEDGRFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A++G +IL +M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEKGVTALQMDIKIQGITEEIMETALNQAREGRLHILGEMN 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ K + ELS AP LIT+KI+P KIRDVIGKGG+TIR L EE IDI D+G + +
Sbjct: 541 KVISKPRAELSANAPTLITLKINPDKIRDVIGKGGATIRALCEEFSANIDIEDDGSVKVY 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ A +IE +T ++G++Y G V R DFGA + I G +GLLHISQI+ +R
Sbjct: 601 AETRDLAAAAAAKIEGITAEPEVGEIYQGKVTRTVDFGAFVEIFPGTEGLLHISQIAQER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD++KE ++VKVL +D RGRIKLSM
Sbjct: 661 VEKVTDYVKEGDVIKVKVLDVDQRGRIKLSM 691
>gi|192359049|ref|YP_001980963.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus
Ueda107]
gi|226702631|sp|B3PIA0.1|PNP_CELJU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|190685214|gb|ACE82892.1| polyribonucleotide nucleotidyltransferase [Cellvibrio japonicus
Ueda107]
Length = 710
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/690 (52%), Positives = 495/690 (71%), Gaps = 2/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N IIK F+YG+ +++E G IARQAT +VLVSI + +L TVV K+ + +FFPL+V
Sbjct: 1 MNPIIKKFQYGNQTVTLETGRIARQATGAVLVSIGEVAVLCTVVGAKEASPGQDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EKAYAAGRIPG +FKREG+PSE+ET+ SRLIDRPIRPLFPEG+LNE+Q++ V+S +
Sbjct: 61 HYQEKAYAAGRIPGGYFKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVICTVVSTD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S AL++S +PF GP+G A+VGY G+ YILNP+ +QL+ S LD++VA
Sbjct: 121 KKQDPDIAAMIGTSAALAVSGIPFNGPIGAARVGYTQGEGYILNPSYKQLETSELDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+K+LPEDI+L A+++GH++M+ I A EL ++ G+ + +W P+ ++
Sbjct: 181 GTKDAVLMVESEAKELPEDIMLGAVLYGHQEMQAVIQACAELARDAGKARWDWQPVPENT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L + I I AY+I +K R + + + E+ I + + +
Sbjct: 241 ELKTAIKAAFGVAIGDAYRITDKAERYNRLGELRSEAVAQFATEES-GISADAVKSLFGT 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE I+R +I+ RID R +RPI++ G+LP+ HGS+LFTRG+TQALVVATLG +
Sbjct: 300 LEYNIVRSRIVANEPRIDGRDNKTVRPITVDVGVLPKAHGSALFTRGETQALVVATLGNA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L GE ++F+LHYN PP++ G+ GR+G RREIGHGRLAKR + VLP
Sbjct: 360 RDVQIIDQLEGEKKEAFLLHYNFPPYSVGECGRMGSTGRREIGHGRLAKRGVQAVLPKAE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ +L+
Sbjct: 420 SFPYTLRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++IAL +A +IL +M
Sbjct: 480 DILGDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAARLHILGEMNK 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + +S+ APR TIKI P KIRD+IGKGG+TIR++TEET + IDI+D+G + + +
Sbjct: 540 VLSQSRTAVSENAPRFETIKIHPDKIRDIIGKGGATIRSITEETNSSIDIDDDGTVKVYA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
++ + Q A RI + +IG +Y G V+R+ DFGA + L GKDGL+HISQI+ +RV
Sbjct: 600 DDNEALQAALNRIGAIVAEAEIGAIYEGTVVRIVDFGAFVNFLPGKDGLVHISQIADERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D+LKE Q V+VK L +D RGRIKLS+
Sbjct: 660 NNVSDYLKEGQVVKVKCLDVDQRGRIKLSI 689
>gi|152988444|ref|YP_001350781.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PA7]
gi|452876035|ref|ZP_21953403.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
VRFPA01]
gi|187611271|sp|A6VCJ6.1|PNP_PSEA7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150963602|gb|ABR85627.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
PA7]
gi|452187158|gb|EME14176.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
VRFPA01]
Length = 701
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/690 (52%), Positives = 486/690 (70%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K F++G +++E G IARQAT +VLV+++D +L TVV K P +FFPL+V
Sbjct: 1 MNPVTKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S N
Sbjct: 61 HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S AL+IS +PF GP+G A+VG+ + YILNPT EQL+ S LD++VA
Sbjct: 121 KKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ +L ED +L A++F H++ + I A+ EL G+ +W ++
Sbjct: 181 GTEDAVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++ I I +AY I KQ R + + E +++ +
Sbjct: 241 VLVNAIKAELGEAISQAYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKDVFGL 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R+ I++ RID R +RP+ I G+L +THGS+LFTRG+TQALVVATLGT+
Sbjct: 301 LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L GE D+FMLHYN PPF+ G+ GR+G P RREIGHGRLA+R + +LP +
Sbjct: 361 RDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPTQD 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + ELS+ AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G + I
Sbjct: 541 VIARPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRAICEETKASIDIEDDGSVKIYG 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS KR+
Sbjct: 601 ETKEAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD L+E Q+V+V VL +D+RGRIKLS+
Sbjct: 661 DKVTDVLQEGQEVKVLVLDVDNRGRIKLSI 690
>gi|393764354|ref|ZP_10352966.1| polynucleotide phosphorylase/polyadenylase [Alishewanella agri
BL06]
gi|392604984|gb|EIW87883.1| polynucleotide phosphorylase/polyadenylase [Alishewanella agri
BL06]
Length = 706
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/692 (53%), Positives = 507/692 (73%), Gaps = 10/692 (1%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+KSF++G + ++E G IARQA ++VL S+ DT +L TVV K+ +FFPLTV+Y
Sbjct: 4 IVKSFQFGQHTFTLETGVIARQADAAVLASLGDTAVLVTVVGKKEAKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V V+SV P+I
Sbjct: 64 EKMYAAGRIPGGFFKREGRPSEGETLTSRLIDRPIRPLFPEGFTNEVQVVATVVSVQPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PDI ++IG S AL+IS +PF GP+G A+VGYI+ +Y+LNP+ E+LK S LDL+VAGT+
Sbjct: 124 QPDIVALIGTSAALAISGIPFSGPIGAARVGYINNQYVLNPSEEELKTSKLDLVVAGTQN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+++L A+++GH++M+ AINAI E + NW K+ LI+
Sbjct: 184 AVLMVESEAGILSEEVMLGAVMYGHQQMQTAINAIVEFAGEAAKPAWNWVAPAKNDALIA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN------ENLTIDINDINCIL 361
KI ++ + AY+I K R ++ I +I ++LI+ E +++ ++ I
Sbjct: 244 KIAELATADLGDAYRITEKAKR---YERIG-EIKAALIEKLSAELAEGEALNLTEVGEIF 299
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
++LESK++R +I RID R IR +S+ TG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 300 HNLESKVVRGRITKGEPRIDGRDPEMIRGLSVMTGVLPRTHGSALFTRGETQALVTATLG 359
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q +D L+ D+FMLHYN PP++ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 TARDAQSVDDLLSAKNDTFMLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVQAVMPS 419
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GE V+
Sbjct: 420 FDEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEGEDFVV 479
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTAEGITALQMDIKIDGITQEIMQIALKQAKAARLHILNVM 539
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ ++E+S++APR+ T+KI+P KIR+VIGKGG+ IR +TEE+GT I++ D+G I I
Sbjct: 540 DQAISSHRSEMSEYAPRIYTMKINPEKIREVIGKGGAVIRQITEESGTTIELEDDGSIKI 599
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + Q A +I +T +++G +Y G V+R+ DFGA + +L GKDGL+HISQIS +
Sbjct: 600 AATTAKAAQIAIDKINAITAEIEVGTIYQGEVVRIVDFGAFVNVLPGKDGLVHISQISDE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D L+ QKV VKVL +D +GR++LS+
Sbjct: 660 RVANVADHLQVGQKVAVKVLEVDKQGRVRLSI 691
>gi|397170773|ref|ZP_10494183.1| polynucleotide phosphorylase/polyadenylase [Alishewanella aestuarii
B11]
gi|396087247|gb|EJI84847.1| polynucleotide phosphorylase/polyadenylase [Alishewanella aestuarii
B11]
Length = 706
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/692 (53%), Positives = 507/692 (73%), Gaps = 10/692 (1%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+KSF++G + ++E G IARQA ++VL S+ DT +L TVV K+ +FFPLTV+Y
Sbjct: 4 IVKSFQFGQHTFTLETGVIARQADAAVLASLGDTAVLVTVVGKKEAKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V V+SV P+I
Sbjct: 64 EKMYAAGRIPGGFFKREGRPSEGETLTSRLIDRPIRPLFPEGFTNEVQVVATVVSVQPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PDI ++IG S AL+IS +PF GP+G A+VGYI+ +Y+LNP+ E+LK S LDL+VAGT+
Sbjct: 124 QPDIVALIGTSAALAISGIPFSGPIGAARVGYINNQYVLNPSEEELKTSKLDLVVAGTQN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L ED++L A+++GH++M+ AINAI E + NW K+ LI+
Sbjct: 184 AVLMVESEAGILSEDVMLGAVMYGHQQMQTAINAIVEFAGEAAKPAWNWVAPTKNDALIA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN------ENLTIDINDINCIL 361
KI ++ + AY+I K R ++ I +I ++LI+ E +++ ++ I
Sbjct: 244 KIAELATADLGDAYRITEKAKR---YERIG-EIKAALIEKLSAELAEGEALNLTEVGEIF 299
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
++LESK++R +I RID R IR +S+ TG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 300 HNLESKVVRGRITKGEPRIDGRDPEMIRGLSVMTGVLPRTHGSALFTRGETQALVTATLG 359
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q +D L+ D+FMLHYN PP++ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 TARDAQSVDDLLSAKNDTFMLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVQAVMPS 419
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+
Sbjct: 420 FDEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEGDDFVV 479
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTAEGITALQMDIKIDGITQEIMQIALKQAKAARLHILNVM 539
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ ++E+S++APR+ T+KI+P KIR+VIGKGG+ IR +TEE+GT I++ D+G I I
Sbjct: 540 DQAISSHRSEMSEYAPRIYTMKINPEKIREVIGKGGAVIRQITEESGTTIELEDDGSIKI 599
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + Q A +I +T +++G +Y G V+R+ DFGA + +L GKDGL+HISQIS +
Sbjct: 600 AATTAKAAQIAIDKINAITAEIEVGAIYQGEVVRIVDFGAFVNVLPGKDGLVHISQISDE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D L+ QKV VKVL +D +GR++LS+
Sbjct: 660 RVANVADHLQVGQKVAVKVLEVDKQGRVRLSI 691
>gi|416856875|ref|ZP_11912393.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
138244]
gi|334841296|gb|EGM19929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
138244]
gi|453043965|gb|EME91692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PA21_ST175]
Length = 701
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/690 (52%), Positives = 485/690 (70%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K F++G +++E G IARQAT +VLV+++D +L TVV K P +FFPL+V
Sbjct: 1 MNPVTKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S N
Sbjct: 61 HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S AL+IS +PF GP+G A+VG+ + YILNPT EQL+ S LD++VA
Sbjct: 121 KKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ +L ED +L A++F H++ + I A+ EL G+ +W ++
Sbjct: 181 GTEDAVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++ I I +AY I KQ R + + E +++ +
Sbjct: 241 VLVNAIKAELGEAISQAYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKDVFGL 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R+ I++ RID R +RP+ I G+L +THGS+LFTRG+TQALVVATLGT+
Sbjct: 301 LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L GE D+FMLHYN PPF+ G+ GR+G P RREIGHGRLA+R + +LP +
Sbjct: 361 RDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPTQD 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ K + ELS+ AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G + I
Sbjct: 541 VIAKPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRGICEETKASIDIEDDGSVKIYG 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS KR+
Sbjct: 601 ETKEAAEAAKLRILAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD L+E Q+V+V VL +D+RGRIKLS+
Sbjct: 661 DKVTDVLQEGQEVKVLVLDVDNRGRIKLSI 690
>gi|375109199|ref|ZP_09755449.1| polynucleotide phosphorylase/polyadenylase [Alishewanella jeotgali
KCTC 22429]
gi|374570758|gb|EHR41891.1| polynucleotide phosphorylase/polyadenylase [Alishewanella jeotgali
KCTC 22429]
Length = 706
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/692 (53%), Positives = 507/692 (73%), Gaps = 10/692 (1%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I+KSF++G + ++E G IARQA ++VL S+ DT +L TVV K+ +FFPLTV+Y
Sbjct: 4 IVKSFQFGQHTFTLETGVIARQADAAVLASLGDTAVLVTVVGKKEAKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAGRIPG FFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V V+SV P+I
Sbjct: 64 EKMYAAGRIPGGFFKREGRPSEGETLTSRLIDRPIRPLFPEGFTNEVQVVATVVSVQPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PDI ++IG S AL+IS +PF GP+G A+VGYI+ +Y+LNP+ E+LK S LDL+VAGT+
Sbjct: 124 QPDIVALIGTSAALAISGIPFSGPIGAARVGYINNQYVLNPSEEELKTSKLDLVVAGTQN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L ED++L A+++GH++M+ AINAI E + NW K+ LI+
Sbjct: 184 AVLMVESEAGILSEDVMLGAVMYGHQQMQTAINAIVEFAGEAAKPAWNWVAPAKNDALIA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN------ENLTIDINDINCIL 361
KI ++ + AY+I K R ++ I +I ++LI+ E +++ ++ I
Sbjct: 244 KIAELATADLGDAYRITEKAKR---YERIG-EIKAALIEKLSAELAEGEALNLTEVGEIF 299
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
++LESK++R +I RID R IR +S+ TG+LPRTHGS+LFTRG+TQALV ATLG
Sbjct: 300 HNLESKVVRGRITKGEPRIDGRDPEMIRGLSVMTGVLPRTHGSALFTRGETQALVTATLG 359
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T+RD Q +D L+ D+FMLHYN PP++ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 TARDAQSVDDLLSAKNDTFMLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVQAVMPS 419
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+
Sbjct: 420 FDEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEGDDFVV 479
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 LSDILGDEDHLGDMDFKVAGTAEGITALQMDIKIDGITQEIMQIALKQAKAARLHILNVM 539
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ ++E+S++APR+ T+KI+P KIR+VIGKGG+ IR +TEE+GT I++ D+G I I
Sbjct: 540 DQAISSHRSEMSEYAPRIYTMKINPEKIREVIGKGGAVIRQITEESGTTIELEDDGSIKI 599
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
A+ + + Q A +I +T +++G +Y G V+R+ DFGA + +L GKDGL+HISQIS +
Sbjct: 600 AATTAKAAQIAIDKINAITAEIEVGAIYQGEVVRIVDFGAFVNVLPGKDGLVHISQISDE 659
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV + D L+ QKV VKVL +D +GR++LS+
Sbjct: 660 RVANVADHLQVGQKVAVKVLEVDKQGRVRLSI 691
>gi|15599934|ref|NP_253428.1| polynucleotide phosphorylase [Pseudomonas aeruginosa PAO1]
gi|107103839|ref|ZP_01367757.1| hypothetical protein PaerPA_01004910 [Pseudomonas aeruginosa PACS2]
gi|116052887|ref|YP_793204.1| polynucleotide phosphorylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893835|ref|YP_002442704.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
LESB58]
gi|254238523|ref|ZP_04931846.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
C3719]
gi|254244358|ref|ZP_04937680.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
2192]
gi|296391567|ref|ZP_06881042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PAb1]
gi|313109720|ref|ZP_07795660.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
39016]
gi|355642722|ref|ZP_09052856.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. 2_1_26]
gi|386060908|ref|YP_005977430.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
M18]
gi|386063763|ref|YP_005979067.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
NCGM2.S1]
gi|416873702|ref|ZP_11917677.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
152504]
gi|418586262|ref|ZP_13150306.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
MPAO1/P1]
gi|418592920|ref|ZP_13156780.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
MPAO1/P2]
gi|419751514|ref|ZP_14277925.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PADK2_CF510]
gi|420141935|ref|ZP_14649569.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
CIG1]
gi|421156260|ref|ZP_15615710.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
ATCC 14886]
gi|421163325|ref|ZP_15622046.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
ATCC 25324]
gi|421170527|ref|ZP_15628470.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
ATCC 700888]
gi|421176995|ref|ZP_15634652.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
CI27]
gi|421182814|ref|ZP_15640284.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
E2]
gi|421519301|ref|ZP_15965972.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PAO579]
gi|424944474|ref|ZP_18360237.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
NCMG1179]
gi|451988335|ref|ZP_21936469.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
18A]
gi|81539753|sp|Q9HV59.1|PNP_PSEAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|122257102|sp|Q02FT2.1|PNP_PSEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702678|sp|B7V1F2.1|PNP_PSEA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|9951002|gb|AAG08126.1|AE004888_1 polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
PAO1]
gi|115588108|gb|ABJ14123.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126170454|gb|EAZ55965.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
C3719]
gi|126197736|gb|EAZ61799.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
2192]
gi|218774063|emb|CAW29879.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
LESB58]
gi|310882162|gb|EFQ40756.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
39016]
gi|334844392|gb|EGM22967.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
152504]
gi|346060920|dbj|GAA20803.1| polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
NCMG1179]
gi|347307214|gb|AEO77328.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
M18]
gi|348032322|dbj|BAK87682.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
NCGM2.S1]
gi|354830160|gb|EHF14215.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. 2_1_26]
gi|375043402|gb|EHS36028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
MPAO1/P1]
gi|375048269|gb|EHS40796.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
MPAO1/P2]
gi|384401976|gb|EIE48328.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PADK2_CF510]
gi|403245242|gb|EJY59064.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
CIG1]
gi|404345220|gb|EJZ71572.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
PAO579]
gi|404519305|gb|EKA30073.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
ATCC 14886]
gi|404523040|gb|EKA33488.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
ATCC 700888]
gi|404529136|gb|EKA39187.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
ATCC 25324]
gi|404530083|gb|EKA40096.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
CI27]
gi|404541256|gb|EKA50621.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
E2]
gi|451753988|emb|CCQ88992.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas aeruginosa
18A]
Length = 701
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/690 (52%), Positives = 485/690 (70%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K F++G +++E G IARQAT +VLV+++D +L TVV K P +FFPL+V
Sbjct: 1 MNPVTKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S N
Sbjct: 61 HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S AL+IS +PF GP+G A+VG+ + YILNPT EQL+ S LD++VA
Sbjct: 121 KKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ +L ED +L A++F H++ + I A+ EL G+ +W ++
Sbjct: 181 GTEDAVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++ I I +AY I KQ R + + E +++ +
Sbjct: 241 VLVNAIKAELGEAISQAYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKDVFGL 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R+ I++ RID R +RP+ I G+L +THGS+LFTRG+TQALVVATLGT+
Sbjct: 301 LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L GE D+FMLHYN PPF+ G+ GR+G P RREIGHGRLA+R + +LP +
Sbjct: 361 RDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPTQD 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ K + ELS+ AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G + I
Sbjct: 541 VIAKPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRGICEETKASIDIEDDGSVKIYG 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS KR+
Sbjct: 601 ETKEAAEAAKLRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD L+E Q+V+V VL +D+RGRIKLS+
Sbjct: 661 DKVTDVLQEGQEVKVLVLDVDNRGRIKLSI 690
>gi|407790509|ref|ZP_11137603.1| polynucleotide phosphorylase/polyadenylase [Gallaecimonas
xiamenensis 3-C-1]
gi|407204057|gb|EKE74039.1| polynucleotide phosphorylase/polyadenylase [Gallaecimonas
xiamenensis 3-C-1]
Length = 726
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/686 (53%), Positives = 504/686 (73%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
IIK+F+YG + +++E G +ARQAT++V+ S++DTV+L +VV K+ + +FFPLTV+Y
Sbjct: 4 IIKTFQYGQHTVTLETGAVARQATAAVIASVDDTVVLVSVVGKKEADQSKDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAG+IPG FFKREG+PSE ET+ +RLIDRPIRPLFP G+ NE+Q+V V+SVNPQ+
Sbjct: 64 ERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVVATVVSVNPQV 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PDI ++IG S AL+IS +PF GP+G A+VGYI+ +LNPTTE+LK S LDL+VAGTE
Sbjct: 124 SPDIVAMIGTSAALAISGIPFAGPIGAARVGYINDNLVLNPTTEELKSSKLDLVVAGTEG 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE++ L E+++L+A++FGH++M+ I AINEL V K +W ++ L
Sbjct: 184 AVLMVESEAELLAEEVMLDAVMFGHQQMQTVIAAINELAAEVNTPKWDWTAPAENTELKD 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
KI I K+ AY+I++K R I ++ SL+ ++ ++ + + +E
Sbjct: 244 KIKAIVWDKLGDAYRIQDKMERYAAIGAIKSELMESLL-ADDAELNTKEAGDLFSKVEKT 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R ++L RID R IR + + TG+LPRTHGS++FTRG+TQALVVATLGT+RD Q
Sbjct: 303 LVRGRVLAGEPRIDGRDPQMIRALDVATGVLPRTHGSAIFTRGETQALVVATLGTTRDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
+D L GE TD+F+ HYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+ +F Y
Sbjct: 363 ILDELTGERTDNFLFHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVLAVMPSAEQFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILG
Sbjct: 423 TVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKSSVAGIAMGLVKEEENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAG+ G+TALQMDIKI GIT +I+Q+AL +A +IL M +
Sbjct: 483 DEDHLGDMDFKVAGSREGVTALQMDIKIEGITKEIMQVALKQAHDARIHILGVMDQAING 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ++S +APR+ T+KI+P KIRDVIGKGGS IR LTEETGT I+I D+G + IA+ +
Sbjct: 543 PREDISAYAPRIHTMKINPEKIRDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAVSGE 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
Q A RRIE LT V++G++Y G V ++ DFGA + IL GK+GL+HISQI+ +R+ +
Sbjct: 603 QAQAAIRRIEDLTAEVEVGRIYDGKVTKIVDFGAFVAILPGKEGLVHISQIAEQRIENVA 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+L+ Q+V+VK L +D +GR++LS+
Sbjct: 663 DYLQVGQEVKVKCLEVDRQGRVRLSI 688
>gi|190149890|ref|YP_001968415.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|189915021|gb|ACE61273.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
Length = 685
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/659 (54%), Positives = 482/659 (73%), Gaps = 1/659 (0%)
Query: 95 LVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETII 154
+ S++DT + TVV+ K+ +FFPLTVDY E+ YAAGRIPG FFKREG+PSE ET+I
Sbjct: 1 MASMDDTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLI 60
Query: 155 SRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGV 214
+RLIDRP+RPLFPEG+ NEIQ++ V+SVNPQI PD+ ++IG S ALS+S +PF GP+G
Sbjct: 61 ARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGA 120
Query: 215 AKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEK 274
A+VG+I+ +++LNPTT + K S LDL+VAGT+KA++ VESE+ L E+ +L+A++FGH++
Sbjct: 121 ARVGFINDQFVLNPTTSEQKISRLDLVVAGTDKAVLMVESEADILSEEQMLSAVVFGHQQ 180
Query: 275 MKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFK 334
++ I I E V+ G+ + +W + LI+++ ++E +I AY+I KQ R
Sbjct: 181 QQVVIENIKEFVKEAGKPRWDWVAPEPNTALINQVKALAEARIGDAYRITEKQARYEQID 240
Query: 335 NISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIR 394
I D+ + L + T+ I I+ LES I+R +I+ RID R V+ +R + I
Sbjct: 241 AIKADVIAQLTAQDE-TVSEGAIIDIITALESSIVRGRIIAGEPRIDGRTVDTVRALDIC 299
Query: 395 TGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDI 454
TG+LPRTHGS++FTRG+TQAL VATLGT RD Q ID L GE +D F+ HYN PP++ G+
Sbjct: 300 TGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGET 359
Query: 455 GRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLAL 514
GRIG PKRREIGHGRLAKR +L V+P +F Y +R+VSEITESNGSSSMASVCG LAL
Sbjct: 360 GRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLAL 419
Query: 515 LDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIK 574
+DAGVPI VAGIAMGL+K+ EK V+LSDILGDED GDMDFKVAGT G+TALQMDIK
Sbjct: 420 MDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIK 479
Query: 575 IFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIG 634
I GIT +I+QIAL +AK +IL M+ +P + ++S FAPR+ T+KIDP KI+DVIG
Sbjct: 480 IEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRADISDFAPRIHTMKIDPKKIKDVIG 539
Query: 635 KGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVL 694
KGG+ IR LTEETGT IDI+D+G + IA+ ++ + + RIE + V++ +Y G V
Sbjct: 540 KGGAVIRALTEETGTSIDIDDDGTVKIAATDNNAAKAVMARIEDIVAEVEVNAIYKGKVT 599
Query: 695 RLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
R+ DFGA + IL GK+GL+HISQI+++RV + D+L Q+V VKV+ ID + RI+L+M
Sbjct: 600 RVVDFGAFVSILGGKEGLVHISQITNERVERVADYLSVGQEVTVKVVEIDRQNRIRLTM 658
>gi|89095210|ref|ZP_01168133.1| polyribonucleotide nucleotidyltransferase [Neptuniibacter
caesariensis]
gi|89080507|gb|EAR59756.1| polyribonucleotide nucleotidyltransferase [Oceanospirillum sp.
MED92]
Length = 701
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/691 (51%), Positives = 491/691 (71%), Gaps = 1/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K+F++G +++IE G +ARQAT SVLV + +L TVV K+ + +FFPL+
Sbjct: 1 MFQVTTKTFQFGGQEVTIETGRVARQATGSVLVKMGGNEVLCTVVGAKEAKAGQDFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YA GRIPG FFKRE +PSE+ET+ SRLIDRPIRPLFP+GY+NE+Q+V V+S
Sbjct: 61 VHYQEKYYAVGRIPGGFFKREARPSEKETLTSRLIDRPIRPLFPKGYMNEVQVVCTVVSA 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI-DGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+VG+ D Y+LNP+ EQL+ S LD++V
Sbjct: 121 DKKNDPDIAAMIGTSAALAISGIPFQGPIGAARVGFTEDAGYLLNPSFEQLQTSELDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++M++ INA+NEL G++ W+ KD
Sbjct: 181 AGTADAVLMVESEAQELSEDEMLGAVLFAHQEMQVVINAVNELAAEAGKEAWVWEAPAKD 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ LI+K+ I AYQ+ +K R + +L E D++ I+
Sbjct: 241 EALIAKVRAEVGEGITAAYQVADKMQRQNALAELRAKAVEALAGEEEGQPSAGDVSGIVS 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE +I+R +I++ RID R +R I ++ +L THGS+LFTRG+TQA+ TLGT
Sbjct: 301 SLEKEIVRGRIVNGEPRIDGRDTKTVRGIDVQIDVLQGTHGSALFTRGETQAIATCTLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD+Q IDA+ GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + VLP
Sbjct: 361 ARDQQIIDAIEGERKDPFMLHYNFPPYSVGECGRMGGAGRREIGHGRLARRGVAAVLPTQ 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y+IR+VSEITESNGSSSMASVCG L+++DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 421 EEFPYTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLVKEGDKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+ IAL +A + +IL++M
Sbjct: 481 TDILGDEDHLGDMDFKVAGTERGVTALQMDIKITGITEEIMDIALEQAYEARVHILKEMA 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
T + + EL AP L +KI+P KIRDVIGKGG+TIR LTEETG IDI D+G + +
Sbjct: 541 TVIGYARPELPDNAPALTQLKINPEKIRDVIGKGGATIRALTEETGASIDIEDDGTVRVY 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + + A +I ++T +IG++Y G V+R+ DFGA + IL GKDGL+HISQI++KR
Sbjct: 601 AEDKAAAKAATDKIIEITAEAEIGQIYKGKVVRIEDFGAFVNILPGKDGLVHISQIANKR 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD+++ +Q+V VKVL +D RGRIKLSM
Sbjct: 661 VEKVTDYIQMDQEVTVKVLDVDQRGRIKLSM 691
>gi|92115185|ref|YP_575113.1| polynucleotide phosphorylase/polyadenylase [Chromohalobacter
salexigens DSM 3043]
gi|122990389|sp|Q1QSZ4.1|PNP_CHRSD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91798275|gb|ABE60414.1| Polyribonucleotide nucleotidyltransferase [Chromohalobacter
salexigens DSM 3043]
Length = 707
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/690 (51%), Positives = 490/690 (71%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+F+YG +++E G IARQAT +V+V+++DTV+L TVV+ KD FFPL+V
Sbjct: 1 MNPVKKTFQYGHSTVTLETGRIARQATGAVMVTMDDTVVLCTVVAKKDVNPAQPFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YA G+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP G++NE+Q+V VLS +
Sbjct: 61 HYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVLSTD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVA 243
DPDIA+++G S AL+IS +PF GP+G A+VG+ + K Y LNPT E+L+ S L+++VA
Sbjct: 121 RNHDPDIAAMLGTSAALAISGVPFNGPIGAARVGFNEDKGYFLNPTVEELESSELNMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTEKA++ VESE+K+L ED +L A++FGH++M+ AI AI L G+ + +W P D
Sbjct: 181 GTEKAVLMVESEAKELLEDEMLGAVLFGHQEMQAAITAIQALADEAGKPRWDWQPPTDDT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
TL S + E K+ +AY+I +K R + + L E+ +D+
Sbjct: 241 TLKSALAAEFEAKVGEAYRITDKMARQDALSALKDEALERLAGEESGQYAADDVKGAFAS 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R +I+ RID R +RP+SI G LP+THGS++FTRG+TQA+VVATLGT
Sbjct: 301 LEKRVVRSRIIQGEPRIDGRDHRTVRPLSIEVGTLPKTHGSAVFTRGETQAVVVATLGTL 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q I++L GE D F+LHYN PP++ G+ G +G PKRREIGHGRLA+R + +LP+
Sbjct: 361 RDAQLIESLEGERKDRFLLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQAMLPSEE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+KD + +L+
Sbjct: 421 DFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDEDGFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ G+TALQMDIKI GI +I++ AL +A + +ILE+M T
Sbjct: 481 DILGDEDHLGDMDFKVAGSTAGVTALQMDIKIEGINEEIMETALQQAHEARLHILEQMNT 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++E+S AP + TIKIDP KIRDVIGKGG+TIR + ++TG ID++D+G + I +
Sbjct: 541 VIAQSRSEVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICDDTGASIDLDDDGTVRIYA 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + + A + +T +IGK+Y G V R+ DFGA + + G DGL+HISQI +RV
Sbjct: 601 EDKTAAKAAIDTVLAITAEPEIGKLYRGTVARITDFGAFVTFMPGTDGLVHISQIVPERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + D+L E Q+V VKVL ID+R R+KLS+
Sbjct: 661 NDVRDYLSEGQEVIVKVLDIDNRNRVKLSI 690
>gi|256821536|ref|YP_003145499.1| polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
16069]
gi|256795075|gb|ACV25731.1| Polyribonucleotide nucleotidyltransferase [Kangiella koreensis DSM
16069]
Length = 706
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/684 (51%), Positives = 488/684 (71%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
KSF+YG ++IE G +ARQAT +V++ + T V K+ +FFPLTV+Y EK
Sbjct: 6 KSFEYGGRTVTIETGRVARQATGAVVIDCDGTTAFVAVTGKKEVREGQDFFPLTVNYTEK 65
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YAAG+IPG F KRE +PS+ ET+I+RLIDRP+RPLFP+G++NE+Q+V+ ++SVN +
Sbjct: 66 TYAAGKIPGGFLKREARPSDEETLIARLIDRPLRPLFPDGFMNEVQVVITIVSVNQDVPT 125
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI 249
++ +++G S AL IS +PF GP+G A+VGY+DG+Y+LNP+ QLK+S LDL+VAGTE A+
Sbjct: 126 EVVAMLGASAALEISGIPFSGPVGAAQVGYLDGEYVLNPSVTQLKESKLDLMVAGTESAV 185
Query: 250 ITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKI 309
+ VESE+ +LPE+++L A++FGH++ ++AI AI EL + K +W K+ L +
Sbjct: 186 LMVESEANELPENVMLGAVMFGHQESQVAIKAIKELAAEAAKPKWDWTAPEKNVPLYDAV 245
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKII 369
+ S I AYQI +K R + +L +E +D+ + + +E +++
Sbjct: 246 KSHSFAAIEDAYQIADKAERYTKINELQSVAVEALAGDEEGQPSADDVKDMFHSIEKEVV 305
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R +I+ RID R + +R + +RTG+ PRTHGS++FTRG+TQA+V ATLGT RD Q
Sbjct: 306 RTRIISGKPRIDGRDPDMVRALDVRTGVFPRTHGSAIFTRGETQAMVFATLGTERDAQIK 365
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D++MGE D FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + ++P +F Y+I
Sbjct: 366 DSIMGEAKDHFMLHYNFPPYCVGETGFMGSPKRREIGHGRLAKRGVAAMVPGIAEFPYTI 425
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ + V+LSDILGDE
Sbjct: 426 RVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEADNFVVLSDILGDE 485
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++ AL++AK G +IL M + K +
Sbjct: 486 DHLGDMDFKVAGTENGITALQMDIKIEGITQEIMEQALHQAKGGRLHILSVMNQALEKPR 545
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
+++S++APR+ IKI KI +VIGKGGSTIR LTEETG I+IND+G + +AS ++
Sbjct: 546 DDISEYAPRITVIKIPVDKISEVIGKGGSTIRALTEETGATIEINDDGTVKVASSDAEGA 605
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
EA RRI+ +T ++ G + G V+RL DFGA + I G+DGL+HISQI+ +RVN +TD+
Sbjct: 606 AEAVRRIKLMTMPIEAGMEFEGKVVRLADFGAFVEITPGRDGLVHISQIAHERVNKVTDY 665
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
LKE V+VKVL +D + RI+LSM
Sbjct: 666 LKEGDVVKVKVLEVDRQNRIRLSM 689
>gi|408373077|ref|ZP_11170775.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax
hongdengensis A-11-3]
gi|407766915|gb|EKF75354.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax
hongdengensis A-11-3]
Length = 697
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 484/691 (70%), Gaps = 1/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI K +YG +++E G+IARQAT++V+V I DT +L TVV K+ + NFFPLT
Sbjct: 1 MFNKITKQIQYGRDTVTLETGQIARQATAAVMVRIGDTEVLVTVVGKKEADPSKNFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG F KREG+PSE+ET+ RLIDRPIRPLFP G++NE+Q+V V+S
Sbjct: 61 VNYQEKTYAAGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S AL+IS +PF GP+G A+VG+ DG YILNP+ +L +S LDL+VA
Sbjct: 121 DKNRDPDIAAMIGTSAALAISGIPFNGPIGAARVGFKDGMYILNPSYTELAESALDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+ I I E VG + +W P +++
Sbjct: 181 GTEPAVLMVESEAKELSEDQMLGAVLFGHQEMQPLIQGIKEFAVEVGTETWDWQPAAQNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
TL + I E + +AY I K R + + E + ++ +
Sbjct: 241 TLKAAIKEKFEGALAEAYTITEKMARYAKVGELRDACVEAFATGEEGAPEAGEVKELFGK 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R+ ++ RID R ++ +RPI + G+L +THGS+LFTRG+TQA+V ATLG
Sbjct: 301 IEKAVVREAVVSGKPRIDGRALDAVRPIEAQVGVLAKTHGSALFTRGETQAIVTATLGGM 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL G D FML YN PP+ G+ G IG PKRREIGHGRLA+R + V+PN
Sbjct: 361 RDGQFIDALEGSRQDHFMLQYNFPPYCVGETGMIGSPKRREIGHGRLARRGVEAVVPNEK 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE-KVVIL 542
F Y+IR+VSEITESNGSSSMASVCG +AL+DAGVP++ VAGIAMGL+K+ + + +L
Sbjct: 421 DFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDGRFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A G +IL +M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALDQANAGRIHILGEMA 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++++S AP L+T+KI+P KIRDVIGKGG+TIR LTEETG IDI D+G + I
Sbjct: 541 KAITESRSQVSDNAPTLMTLKINPDKIRDVIGKGGATIRALTEETGCTIDIEDDGSVKIY 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+A RR+E++T ++G +Y G V R+ DFGA + IL G +GLLHISQI+ +R
Sbjct: 601 GETREKAMDAVRRVEEITAEAEVGTIYEGKVTRVVDFGAFVAILPGTEGLLHISQIAEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D++ E ++VKVL +D RGRIKLSM
Sbjct: 661 VEKVSDYVNEGDIIKVKVLDVDQRGRIKLSM 691
>gi|54298752|ref|YP_125121.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
str. Paris]
gi|81369705|sp|Q5X1C7.1|PNP_LEGPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|53752537|emb|CAH13969.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
Paris]
Length = 729
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/688 (52%), Positives = 499/688 (72%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K +G++K+ +E GE+ARQA +V+ S+ T +L TVV KD + +FFPLTV+Y
Sbjct: 3 KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDSGESNDFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+PS+ ET+ISRLIDRPIRPLFP+ + NE+QI+ VLS+NP+
Sbjct: 63 QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ PDI ++IG S ALSIS +PF GP+G A+VGY DG Y+LNP+ ++ ++S LDL++AGT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+++L EDI+ A+++GHE MK I +I EL + VG+ K W D L
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKSVIKSIEELAREVGKSKPEWKAPEIDTVLK 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCILYDLE 365
++I +++ +++ AY IK+KQ R + + S+L+ +N+ L D+ I + +LE
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADV--IANMFGELE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
I+R +ILD RID R +RPISIRT L RTHGS LFTRG+TQA+VVATLG RD
Sbjct: 301 RSIVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D + GE D FMLHYN PP++ G+ G++G PKRREIGHGRLAKRAL+ VLP+ N+F
Sbjct: 361 AQILDGISGETRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYVLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A +G ++IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELS+ APR+ T+K+ KIR +IGKGG+TI+ L E TG IDI+D G+I + S +
Sbjct: 541 AEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
++ +EA+++I+ L +++G+ Y G V ++ DFGA I +L GKDGLLHISQI ++R
Sbjct: 601 KMALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICAERTQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + L+E Q++ V V GID +GR+KL
Sbjct: 661 VEEVLQEGQEIEVFVAGIDKQGRVKLEW 688
>gi|397668440|ref|YP_006509977.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
subsp. pneumophila]
gi|395131851|emb|CCD10144.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
subsp. pneumophila]
Length = 729
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/688 (52%), Positives = 498/688 (72%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K +G++K+ +E GE+ARQA +V+ S+ T +L TVV KD + +FFPLTV+Y
Sbjct: 3 KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDSGESNDFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+PS+ ET+ISRLIDRPIRPLFP+ + NE+QI+ VLS+NP+
Sbjct: 63 QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ PDI ++IG S ALSIS +PF GP+G A+VGY DG Y+LNP+ ++ ++S LDL++AGT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+++L EDI+ A+++GHE MK I +I EL + VG+ K W D L
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKSVIKSIEELAREVGKSKPEWKAPEIDTVLK 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCILYDLE 365
++I +++ +++ AY IK+KQ R + + S+L+ +N+ L DI I + +LE
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADI--IANMFGELE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
I+R +ILD RID R +RPISIRT L RTHGS LFTRG+TQA+VVATLG RD
Sbjct: 301 RSIVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D + GE D FMLHYN PP++ G+ G++G PKRREIGHGRLAKRAL+ VLP+ N+F
Sbjct: 361 AQILDGISGETRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYVLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A +G ++IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELS+ APR+ T+K+ KIR +IGKGG+TI+ L E TG IDI+D G+I + S +
Sbjct: 541 AEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
++ +EA+++I+ L +++G+ Y G V ++ DFGA I +L GKDGLLHISQI + R
Sbjct: 601 KMALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + L+E Q++ V V GID +GR+KL
Sbjct: 661 VEEVLQEGQEIEVFVAGIDKQGRVKLEW 688
>gi|448747669|ref|ZP_21729325.1| Polyribonucleotide nucleotidyltransferase [Halomonas titanicae BH1]
gi|445564781|gb|ELY20897.1| Polyribonucleotide nucleotidyltransferase [Halomonas titanicae BH1]
Length = 724
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/703 (50%), Positives = 499/703 (70%), Gaps = 6/703 (0%)
Query: 56 LIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS 115
+IM+K N + K+F+YG +++E G IARQAT +V+V+++DTV+L TVV+ K+
Sbjct: 1 MIMLK-EVAVNPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVARKEANP 59
Query: 116 TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQ 175
+ FFPL+V Y EK YA G+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q
Sbjct: 60 SQPFFPLSVHYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQ 119
Query: 176 IVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLK 234
+V VLS + DPDIA+++G S ALSIS +PF GP+G A+VG+ + K Y LNPT E+L
Sbjct: 120 VVCTVLSTDRNHDPDIAALLGTSAALSISGVPFSGPIGAARVGFNEEKGYFLNPTVEELA 179
Query: 235 KSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKV 294
S LD++VAGTEKA++ VESE+K+L ED +L A++FGH++M++AI+AINELV G+ +
Sbjct: 180 TSELDMVVAGTEKAVLMVESEAKELLEDEMLGAVLFGHQEMQVAISAINELVAEAGKPRW 239
Query: 295 NWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NL 350
W +++ L + + + E K+ AY+I +K R + L +E N
Sbjct: 240 EWQAAEENQALKAAMADAFEAKVGDAYRITDKMQRQDALAELKDQAIEQLAADEGEPVND 299
Query: 351 TIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRG 410
+D+ LE +++R +++ RID R +RP++I G+LP+ HGS++FTRG
Sbjct: 300 KFSKDDVKGAFASLEKRVVRSRVVKGEPRIDGRDNQTVRPLAIEVGVLPKAHGSAIFTRG 359
Query: 411 DTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRL 470
+TQA+ VATLGT RD Q I++L GE D FMLHYN PP++ G+ G +G PKRREIGHGRL
Sbjct: 360 ETQAIAVATLGTLRDSQLIESLEGERKDRFMLHYNFPPYSVGEAGFMGGPKRREIGHGRL 419
Query: 471 AKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAM 530
A+R + +LP+ + F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAM
Sbjct: 420 ARRGVQAMLPSEDVFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAM 479
Query: 531 GLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKA 590
GL+KD + +L+DILGDED GDMDFKVAG+ G+TALQMDIKI GI +I+++AL +A
Sbjct: 480 GLVKDPDGFAVLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMELALQQA 539
Query: 591 KKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQ 650
ILE+M + + ++++S AP + TIKIDP KIRDVIGKGG+TIR + E+TG
Sbjct: 540 LTARLSILEQMNVVISQSRSDVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICEDTGAS 599
Query: 651 IDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKD 710
ID++D+G + I + + + + A + +T +IGK+Y G V+R+ DFGA + I+ G D
Sbjct: 600 IDLDDDGTVRIYAEDKAAAKRAIDTVLAITAEAEIGKLYHGKVVRIADFGAFVNIMPGTD 659
Query: 711 GLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
GL+HISQI ++RVN + DFL E V VKVL ID+R R+KLSM
Sbjct: 660 GLVHISQIVAERVNNVRDFLNEGDDVVVKVLDIDNRNRVKLSM 702
>gi|410629566|ref|ZP_11340265.1| polyribonucleotide nucleotidyltransferase [Glaciecola arctica
BSs20135]
gi|410150898|dbj|GAC17132.1| polyribonucleotide nucleotidyltransferase [Glaciecola arctica
BSs20135]
Length = 705
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/686 (51%), Positives = 491/686 (71%), Gaps = 1/686 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F+YG + +++E G IARQAT++V+ S++DT +L +VV KD +FFPLTV+Y
Sbjct: 4 ITKTFQYGQHTVTLETGVIARQATAAVMASMDDTCVLVSVVGKKDTKPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK YAAG+IPG FFKREG+PSE ET+ SRLIDRPIRPLFP G++NE+QI++ V+S NP+I
Sbjct: 64 EKTYAAGKIPGGFFKREGRPSEYETLTSRLIDRPIRPLFPNGFMNEVQIIITVVSANPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
DI S+IG S AL+IS +PF GP+G A+VGY D +Y+LN T +L+ S LDL+VAGT+
Sbjct: 124 PTDIISLIGASAALAISGMPFNGPIGAARVGYKDEQYLLNTRTSELEDSQLDLVVAGTKN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L E+++L A+++GHE+++ I A+ E V NW + ++ L +
Sbjct: 184 AVLMVESEADILSEEVMLGAVMYGHEQLQTVIGAVAEFAAEVNTPSWNWQAVAENTALKT 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ ++E + +AYQI +K R ++ ++ + + + +++ +++ LES
Sbjct: 244 KVKELAEAGMTEAYQISDKMERKDAINALTSKTVEEIVAADE-SQNAKEVSEMMHALESD 302
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL RID R IR +++ TG+LPRTHGS+LFTRG+TQA+V ATLGT RD Q
Sbjct: 303 VVRSRILAGQPRIDGRDPAMIRALNVATGLLPRTHGSALFTRGETQAIVAATLGTERDAQ 362
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID L G+ FMLHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+ +F Y
Sbjct: 363 MIDGLSGKTDSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSEKEFPY 422
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ E V+LSDILG
Sbjct: 423 VVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKNDENFVVLSDILG 482
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL M +
Sbjct: 483 DEDHLGDMDFKVAGTTNGITALQMDIKIEGITQEIMQVALKQAKEARLHILGVMDQAISG 542
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S+FAPR+ +K+D KIRDVIGKGG+ IR +TE + I+I D+G + I +
Sbjct: 543 HREEMSEFAPRIYKMKVDKDKIRDVIGKGGAMIRAITEASECNIEIEDDGTVKIFATELA 602
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
Q A +IE++T V+ GK Y+G V R+ DFGA + IL GK+GL+HISQI+ +RVN ++
Sbjct: 603 KAQIAIAKIEQVTVEVESGKTYSGKVTRIVDFGAFVEILPGKEGLVHISQIAHERVNKVS 662
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
DFL+E Q + VKV+ ID + R++LS+
Sbjct: 663 DFLEEGQILDVKVVEIDRQNRVRLSI 688
>gi|399907829|ref|ZP_10776381.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. KM-1]
Length = 710
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/690 (51%), Positives = 497/690 (72%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+F+YG +++E G IARQAT +V+V++++TV+L TVV+ KD +FFPL+V
Sbjct: 1 MNPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDETVVLCTVVARKDTKPGQDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YA G+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ VLS +
Sbjct: 61 HYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVA 243
DPDIA+++G S AL+IS +PF GP+G A+VG+ + K Y LNPT E+L S LD++VA
Sbjct: 121 RNHDPDIAAMLGTSAALAISGVPFNGPIGAARVGFDEEKGYFLNPTVEELASSELDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTEKA++ VESE+++L ED +L A++FGH++M++AI AINELV G+ K +W P ++
Sbjct: 181 GTEKAVLMVESEAEELLEDEMLGAVLFGHQEMQVAIRAINELVAEAGKPKWDWQPPAENT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L I + E K+ +AY+I +K R + + L E D +++
Sbjct: 241 ALKQAIADAFEAKVGEAYRITDKMARQDALAALKEQAVEQLAGEEEGKFDADEVKGAFAG 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R +++ RID R +RP++I G LP+THGS++FTRG+TQA+V+ATLGT
Sbjct: 301 LEKRVVRSRVVKGEPRIDGRDHKTVRPLAIEVGSLPKTHGSAIFTRGETQAIVIATLGTL 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q I++L GE D F+LHYN PP++ G+ G +G PKRREIGHGRLA+R + +LP+
Sbjct: 361 RDAQLIESLEGERKDRFLLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQAMLPDEA 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+KD +L+
Sbjct: 421 DFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPMKAPVAGIAMGLVKDESGFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ G+TALQMDIKI GI +I++IAL +A + +ILE+M
Sbjct: 481 DILGDEDHLGDMDFKVAGSAAGVTALQMDIKIEGINEEIMEIALQQAHEARLHILEQMNE 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++E+S+ AP + TIKIDP KIRDVIGKGG+TIR + E+TG ID++D+G + I +
Sbjct: 541 VIGQSRSEVSENAPSMATIKIDPEKIRDVIGKGGATIRKICEDTGASIDLDDDGTVRIYA 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + ++A + +T +IGK+Y G V+R+ DFGA + I+ G DGL+HISQI +RV
Sbjct: 601 EDKAAAKKAIDIVLSITAEAEIGKLYRGKVVRIADFGAFVNIMPGTDGLVHISQIVPERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + DFL E +V VKVL ID+R R+KL++
Sbjct: 661 NDVRDFLNEGDEVVVKVLDIDNRNRVKLTI 690
>gi|52842967|ref|YP_096766.1| polynucleotide phosphorylase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778652|ref|YP_005187094.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|81376653|sp|Q5ZRV8.1|PNP_LEGPH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52630078|gb|AAU28819.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|364509470|gb|AEW52994.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 729
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/688 (52%), Positives = 499/688 (72%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K +G++K+ +E GE+ARQA +V+ S+ T +L TVV KD + +FFPLTV+Y
Sbjct: 3 KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+PS+ ET+ISRLIDRPIRPLFP+ + NE+QI+ VLS+NP+
Sbjct: 63 QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ PDI ++IG S ALSIS +PF GP+G A+VGY DG Y+LNP+ ++ ++S LDL++AGT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+++L EDI+ A+++GHE MK I +I EL ++VG+ K W D L
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLK 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCILYDLE 365
++I +++ +++ AY IK+KQ R + + S+L+ +N+ L D+ I + +LE
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADV--IANMFGELE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
I+R +ILD RID R +RPISIRT L RTHGS LFTRG+TQA+VVATLG RD
Sbjct: 301 RSIVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D + GE D FMLHYN PP++ G+ G++G PKRREIGHGRLAKRAL+ VLP+ N+F
Sbjct: 361 AQILDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYVLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A +G ++IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELS+ APR+ T+K+ KIR +IGKGG+TI+ L E TG IDI+D G++ + S +
Sbjct: 541 AEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVVQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
++ +EA+++I+ L +++G+ Y G V ++ DFGA I +L GKDGLLHISQI + R
Sbjct: 601 KMALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + L+E Q++ V V GID +GR+KL
Sbjct: 661 VEEVLQEGQEIEVFVAGIDKQGRVKLEW 688
>gi|297180386|gb|ADI16603.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [uncultured gamma proteobacterium
HF0010_01E20]
Length = 701
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 494/691 (71%), Gaps = 5/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I K F+YG + +E ++A+QA+ SV+V+I TV+L TVV K+P +FFPLTV
Sbjct: 1 MNPIYKEFQYGDETVVMETNKVAKQASGSVIVTIGSTVVLTTVVGAKNPRPGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YAAG+IPG FF+REG+PSE+ET+ SRLIDRPIRPLFP+G++NE+Q+V VLS +
Sbjct: 61 NYQEKTYAAGKIPGGFFRREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSAD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
DPDIA++IG S AL+IS +PF GPLG A+VGYIDG YILNP E LK+S L++ VAG
Sbjct: 121 KDQDPDIAAMIGTSAALAISGIPFKGPLGAARVGYIDGNYILNPGYESLKESMLNMTVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+K++ ED +L A++FGH++M+ I A+ EL G++ +W KD++
Sbjct: 181 TESAVLMVESEAKEMTEDEMLGAVLFGHQEMQAIIKAVTELAAIAGKEAWDWRAAAKDES 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILY 362
L + + + +AY+I NK R + + + D E + +I+D
Sbjct: 241 LQETVATTIKTDLGEAYRISNKMERQTAVSALRQKAIEQIAGGDAEYSSDEISDT---FA 297
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+E ++R+++L+ RID R + +RPI + G+LP+ HGS+LFTRG+TQALVVATLGT
Sbjct: 298 KVEKDLVRQRVLNGEPRIDGRDLRTVRPIEVEVGVLPKAHGSALFTRGETQALVVATLGT 357
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD IDAL G + D+FMLHYN PP++ G+ G + PKRREIGHG+LA+R + LPN
Sbjct: 358 LRDAALIDALEGSYKDTFMLHYNFPPYSVGEAGFMSGPKRREIGHGKLARRGVSASLPNA 417
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVPI+ VAG+AMGL+K+G + +L
Sbjct: 418 EDFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPITAPVAGVAMGLVKEGNRYAVL 477
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A + +IL +M
Sbjct: 478 TDILGDEDHLGDMDFKVAGTDKGVTALQMDIKIEGITEEIMESALAQAHEARIHILGEMN 537
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++T+ + P KIRD+IGKGG+TIR++ EETG ++DIND+G + I
Sbjct: 538 KVISESRSELSANAPAMVTMNVHPDKIRDIIGKGGATIRSIVEETGAEVDINDDGSVRIY 597
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ ++ + A RI+++T ++G++Y G V R+ DFGA + IL GKDGLLHISQI+ R
Sbjct: 598 AEDASAKDAAVARIQEITAEAEVGQIYEGTVARIVDFGAFVTILPGKDGLLHISQIAENR 657
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q V V VL +D RGRIKLS+
Sbjct: 658 VENVSDYLSEGQDVEVVVLDVDQRGRIKLSI 688
>gi|397665362|ref|YP_006506900.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
subsp. pneumophila]
gi|395128773|emb|CCD06993.1| polynucleotide phosphorylase/polyadenylase [Legionella pneumophila
subsp. pneumophila]
Length = 729
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/688 (52%), Positives = 498/688 (72%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K +G++K+ +E GE+ARQA +V+ S+ T +L TVV KD + +FFPLTV+Y
Sbjct: 3 KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+PS+ ET+ISRLIDRPIRPLFP+ + NE+QI+ VLS+NP+
Sbjct: 63 QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ PDI ++IG S ALSIS +PF GP+G A+VGY DG Y+LNP+ ++ ++S LDL++AGT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+++L EDI+ A+++GHE MK I +I EL + VG+ K W D L
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELAREVGKSKPEWKAPEIDTVLK 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCILYDLE 365
++I +++ +++ AY IK+KQ R + + S+L+ +N+ L D+ I + +LE
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADV--IANMFGELE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
I+R +ILD RID R +RPISIRT L RTHGS LFTRG+TQA+VVATLG RD
Sbjct: 301 RSIVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D + GE D FMLHYN PP++ G+ G++G PKRREIGHGRLAKRAL+ VLP+ N+F
Sbjct: 361 AQILDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDTNEF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYVLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A +G ++IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTETGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELS+ APR+ T+K+ KIR +IGKGG+TI+ L E TG IDI+D G+I + S +
Sbjct: 541 AEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
++ +EA+++I+ L +++G+ Y G V ++ DFGA I +L GKDGLLHISQI + R
Sbjct: 601 KMALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + L+E Q++ V V GID +GR+KL
Sbjct: 661 VEEVLQEGQEIEVFVAGIDKQGRVKLEW 688
>gi|352104781|ref|ZP_08960534.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. HAL1]
gi|350598703|gb|EHA14813.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. HAL1]
Length = 722
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/693 (51%), Positives = 492/693 (70%), Gaps = 5/693 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N + K+F+YG +++E G IARQAT +V+V+++DTV+L TVV+ K+ + FFPL+V
Sbjct: 8 NPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVARKEANPSQPFFPLSVH 67
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YA G+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q+V VLS +
Sbjct: 68 YQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVLSTDR 127
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVAG 244
DPDIA+++G S ALSIS +PF GP+G A+VG+ + K Y LNPT E+L S LD++VAG
Sbjct: 128 NHDPDIAALLGTSAALSISGVPFSGPIGAARVGFNEEKGYFLNPTVEELATSELDMVVAG 187
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TEKA++ VESE+K+L ED +L A++FGH++M++AI+AINELV G+ + W ++
Sbjct: 188 TEKAVLMVESEAKELLEDEMLGAVLFGHQEMQVAISAINELVAEAGKPRWEWQAAEENVA 247
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINCI 360
L + + + E K+ AY+I +K R + L +E N +D+
Sbjct: 248 LKAAMADAFEAKVGDAYRITDKMQRQDALAELKAQAIEQLAADEGEPVNDKFSKDDVKGA 307
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
LE +++R +++ RID R +RP++I G+LP+ HGS++FTRG+TQA+ VATL
Sbjct: 308 FAGLEKRVVRSRVVKGEPRIDGRDNQTVRPLAIEVGVLPKAHGSAVFTRGETQAIAVATL 367
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT RD Q I++L GE D FMLHYN PP++ G+ G +G PKRREIGHGRLA+R + +LP
Sbjct: 368 GTLRDSQLIESLEGERKDRFMLHYNFPPYSVGEAGFMGGPKRREIGHGRLARRGVQAMLP 427
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+KD +
Sbjct: 428 AEDAFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDADGFA 487
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+L+DILGDED GDMDFKVAG+ GITALQMDIKI GI +I+++AL +A ILE+
Sbjct: 488 VLTDILGDEDHLGDMDFKVAGSEEGITALQMDIKIEGINEEIMELALQQALTARLSILEQ 547
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + ++++S AP + TIKIDP KIRDVIGKGG+TIR + E+TG ID++D+G +
Sbjct: 548 MNVVISQSRSDVSDNAPSMATIKIDPDKIRDVIGKGGATIRKICEDTGASIDLDDDGTVR 607
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I + + + + A + +T +IGK+Y G V+R+ DFGA + I+ G DGL+HISQI +
Sbjct: 608 IYAEDKAAAKRAIDTVLAITAEAEIGKLYNGKVVRIADFGAFVNIMPGTDGLVHISQIVA 667
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RVN + DFL E V VKVL ID+R R+KLSM
Sbjct: 668 ERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSM 700
>gi|54295598|ref|YP_128013.1| polynucleotide phosphorylase [Legionella pneumophila str. Lens]
gi|81367664|sp|Q5WT40.1|PNP_LEGPL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|53755430|emb|CAH16926.1| Polynucleotide phosphorylase (PNPase) [Legionella pneumophila str.
Lens]
Length = 729
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/688 (52%), Positives = 499/688 (72%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K +G++K+ +E GE+ARQA +V+ S+ T +L TVV KD + +FFPLTV+Y
Sbjct: 3 KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+PS+ ET+ISRLIDRPIRPLFP+ + NE+QI+ VLS+NP+
Sbjct: 63 QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ PDI ++IG S ALSIS +PF GP+G A+VGY DG Y+LNP+ ++ ++S LDL++AGT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+++L EDI+ A+++GHE MK I +I EL ++VG+ K W D L
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLK 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCILYDLE 365
++I +++ +++ AY IK+KQ R + + S+L+ +N+ L D+ I + +LE
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLGELREQTISALLAENDELNADV--IANMFGELE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
I+R +ILD RID R +RPIS+RT L RTHGS LFTRG+TQA+VVATLG RD
Sbjct: 301 RSIVRNRILDGEPRIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D + GE D FMLHYN PP++ G+ G++G PKRREIGHGRLAKRAL+ VLP+ N+F
Sbjct: 361 AQILDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYVLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A +G ++IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELS+ APR+ T+K+ KIR +IGKGG+TI+ L E TG IDI+D G+I + S +
Sbjct: 541 AEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
++ +EA+++I+ L +++G+ Y G V ++ DFGA I +L GKDGLLHISQI + R
Sbjct: 601 KIALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICAARTQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + L+E Q++ V V GID +GR+KL
Sbjct: 661 VEEVLQEGQEIEVFVAGIDKQGRVKLEW 688
>gi|392986412|ref|YP_006484999.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
DK2]
gi|392321917|gb|AFM67297.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas aeruginosa
DK2]
Length = 701
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/690 (52%), Positives = 484/690 (70%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K F++G +++E G IARQAT +VLV+++D +L TVV K P +FFPL+V
Sbjct: 1 MNPVTKQFQFGQSTVTLETGRIARQATGAVLVTMDDVSVLVTVVGAKSPAEGRDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S N
Sbjct: 61 HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTN 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S AL+IS +PF GP+G A+VG+ + YILNPT EQL+ S LD++VA
Sbjct: 121 KKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQLQSSSLDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ +L ED +L A++F H++ + I A+ EL G+ +W ++
Sbjct: 181 GTEDAVLMVESEADELTEDQMLGAVLFAHDEFQAVIRAVKELAAEAGKPAWDWKAPAENT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++ I I +AY I KQ R + + E +++ +
Sbjct: 241 VLVNAIKAELGEAISQAYTITIKQDRYNRLGELRDQAVALFAGEEEGKFPASEVKDVFGL 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R+ I++ RID R +RP+ I G+L +THGS+LFTRG+TQALVVATLGT+
Sbjct: 301 LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L GE D+FMLHYN PPF+ G+ GR+G P REIGHGRLA+R + +LP +
Sbjct: 361 RDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSPGCREIGHGRLARRGVAAMLPTQD 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ K + ELS+ AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G + I
Sbjct: 541 VIAKPRAELSENAPTMLQMKIDSDKIRDVIGKGGATIRGICEETKASIDIEDDGSVKIYG 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS KR+
Sbjct: 601 ETKEAAEAAKLRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD L+E Q+V+V VL +D+RGRIKLS+
Sbjct: 661 DKVTDVLQEGQEVKVLVLDVDNRGRIKLSI 690
>gi|443473717|ref|ZP_21063739.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas
pseudoalcaligenes KF707]
gi|442904591|gb|ELS29568.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas
pseudoalcaligenes KF707]
Length = 702
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/691 (52%), Positives = 482/691 (69%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSI-EDTVILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV++ +D +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTMDQDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG+LNE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYID-GKYILNPTTEQLKKSHLDLLV 242
N + DPDIA++IG S AL+IS +PF GP+G A+V Y + Y+LNP EQLK S LD++V
Sbjct: 121 NKKTDPDIAAMIGTSAALAISGIPFAGPIGAARVAYHEEAGYLLNPNYEQLKASALDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+++L ED +L A++F H++ + I A+ E G+ NW V++
Sbjct: 181 AGTEDAVLMVESEAQELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPAWNWTAPVEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+S I I +AY I KQ R + + + + ++
Sbjct: 241 TALLSAIKAEFGEAISQAYTITIKQDRYNRLDELREQVIARFSGEAEGQFPAGEVKEAFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE + +R+ I++ RID R +RP+ I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 301 LLEYRTVRENIVNGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D+FMLHYN PPF+ G+ GR+G RREIGHGRLA+R + +LP
Sbjct: 361 ARDAQLLDTLEGERKDAFMLHYNFPPFSVGECGRMGSAGRREIGHGRLARRGVAAMLPKG 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 421 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 481 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALEQALEARLNILGQMN 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS+ AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G + I
Sbjct: 541 QVIAESRSELSENAPTMLAMKIDSDKIRDVIGKGGATIRGICEETKASIDIEDDGSVKIF 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IG+VY G V R+ DFGA + IL GKDGL+HISQIS KR
Sbjct: 601 GETKEAAEAARQRVLAITAEAEIGRVYVGKVERIVDFGAFVNILPGKDGLVHISQISDKR 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD LKE Q+V+V VL +D+RGRIKLSM
Sbjct: 661 IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSM 691
>gi|410664019|ref|YP_006916390.1| polynucleotide phosphorylase/polyadenylase [Simiduia agarivorans
SA1 = DSM 21679]
gi|409026376|gb|AFU98660.1| polynucleotide phosphorylase/polyadenylase [Simiduia agarivorans
SA1 = DSM 21679]
Length = 711
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 482/691 (69%), Gaps = 4/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N +IKSF+YGS +++E G +ARQA+ +V+ +I +T +L TVV K+ +FFPL+V
Sbjct: 1 MNPVIKSFQYGSDTVTLETGRVARQASGAVIATIGETSVLCTVVGAKEAKEGQDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EKAYAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP G+ NE+Q+V V+S
Sbjct: 61 HYQEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGFKNEVQVVCTVVSAE 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI--DGKYILNPTTEQLKKSHLDLLV 242
+DPDI ++IG S AL+IS +PF GP+G A+VGY DG YILNPT LK S LD++V
Sbjct: 121 KNVDPDICAMIGTSAALAISGIPFAGPIGAARVGYTQADG-YILNPTYSALKTSELDMVV 179
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+ +LPEDI+L A+++ H++M+ + A++EL ++ G+ +W ++
Sbjct: 180 AGTKDAVLMVESEANELPEDIMLGAVLYAHQEMQAVVQAVSELARDAGKPVWDWSAPAEN 239
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + + E I AY+I +K R + L+ NE+ + +D+
Sbjct: 240 TELKAALAKGFEDSIGVAYRITDKAKRYDRLGELRSQAIEELV-NEDAGVSKDDVREAFA 298
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE I+R +++ RID R +R I + G+LP+ HGS+LFTRG+TQALVVATLG+
Sbjct: 299 KLEKNIVRSRVVAGEPRIDGRDAKTVRAIEVEVGVLPKAHGSALFTRGETQALVVATLGS 358
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q IDAL GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + LPN
Sbjct: 359 ARDAQIIDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAASLPNM 418
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F YS+R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ +L
Sbjct: 419 DDFPYSLRVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEDNGFAVL 478
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I++IAL +A +IL +M
Sbjct: 479 TDILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEEIMEIALEQALHARLHILAEMN 538
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + E++ APR IK+DP KIRD+IGKGG+ IR +TEETG IDI D+G +TI
Sbjct: 539 KVISAPRGEINDNAPRFEKIKVDPDKIRDIIGKGGAVIRAMTEETGASIDIEDDGTVTIF 598
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
++ RI +T ++G++Y G V+R+ DFGA + L GKDGL+HISQI+ +R
Sbjct: 599 GQTGEVIRDVLDRIGAITAEAEVGEIYEGTVVRIVDFGAFVNFLPGKDGLVHISQIAEER 658
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN + D+LKE Q VRVK L +D RGRIKLS+
Sbjct: 659 VNDVNDYLKEGQVVRVKCLDVDQRGRIKLSI 689
>gi|307611640|emb|CBX01326.1| polynucleotide phosphorylase [Legionella pneumophila 130b]
Length = 729
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/688 (52%), Positives = 499/688 (72%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K +G++K+ +E GE+ARQA +V+ S+ T +L TVV KD + +FFPLTV+Y
Sbjct: 3 KITKEIVFGNHKLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+PS+ ET+ISRLIDRPIRPLFP+ + NE+QI+ VLS+NP+
Sbjct: 63 QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ PDI ++IG S ALSIS +PF GP+G A+VGY DG Y+LNP+ ++ ++S LDL++AGT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+++L EDI+ A+++GHE MK I +I EL ++VG+ K W D L
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELARDVGKSKPEWKAPEIDTVLK 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCILYDLE 365
++I +++ +++ AY IK+KQ R + + S+L+ +N+ L D+ I + +LE
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLGELREQTISALLAENDELNADV--IANMFGELE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
I+R +ILD RID R +RPIS+RT L RTHGS LFTRG+TQA+VVATLG RD
Sbjct: 301 RSIVRNRILDGEPRIDGRDHRTVRPISVRTKFLERTHGSCLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D + GE D FMLHYN PP++ G+ G++G PKRREIGHGRLAKRAL+ VLP+ N+F
Sbjct: 361 AQILDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYVLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A +G ++IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMERALEQALEGRTHILGVMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELS+ APR+ T+K+ KIR +IGKGG+TI+ L E TG IDI+D G+I + S +
Sbjct: 541 AEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
++ +EA+++I+ L +++G+ Y G V ++ DFGA I +L GKDGLLHISQI + R
Sbjct: 601 KMALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + L+E Q++ V V GID +GR+KL
Sbjct: 661 VEEVLQEGQEIEVFVAGIDKQGRVKLEW 688
>gi|226946303|ref|YP_002801376.1| polynucleotide phosphorylase/polyadenylase [Azotobacter vinelandii
DJ]
gi|259534109|sp|C1DFK5.1|PNP_AZOVD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226721230|gb|ACO80401.1| polyribonucleotide nucleotidyltransferase [Azotobacter vinelandii
DJ]
Length = 702
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/691 (52%), Positives = 490/691 (70%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIED-TVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQA+ +VLV+I+D +L TVV+ K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQASGAVLVTIDDEVAVLVTVVAAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q++ VLS
Sbjct: 61 VHYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVICTVLST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIAS+IG S AL++S +PF GP+G A+VG+ + Y+LNP+ EQLK S LD++V
Sbjct: 121 SKKTDPDIASMIGTSAALAVSGIPFNGPIGAARVGFHEETGYLLNPSYEQLKASRLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+++L ED +L A++F HE+ + I AI E G+ +W P V++
Sbjct: 181 AGTESAVLMVESEAEELTEDQMLGAVLFAHEEFQAVIQAIKEFAAETGRSAWDWQPPVEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I KQ R + + + L + + ++
Sbjct: 241 TALLEAIRAEFGEAISQAYTITVKQERYGRLDELREQTIARLAGDAEGQPSVAEVKEAFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+E + +R+ I+D RID R +RP+ I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 301 LIEYRTVRQNIVDGKPRIDGRDNRTVRPLKIEVGVLPKTHGSALFTRGETQALVVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE DSFMLHYN PPF+ G+ GR+G RREIGHGRLA+R + +LP +
Sbjct: 361 ARDAQVLDTLEGERKDSFMLHYNFPPFSVGECGRMGSAGRREIGHGRLARRGVQAMLPKD 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 421 DSFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + +IL +M
Sbjct: 481 TDILGDEDHLGDMDFKVAGTAAGVTALQMDIKIQGITEEIMEIALNQALEARLHILGQMG 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++++KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 541 QVIGQSRSELSSNAPTMLSMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS +R
Sbjct: 601 GETREAAEAAKQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQR 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 661 IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 691
>gi|148361082|ref|YP_001252289.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
str. Corby]
gi|296108412|ref|YP_003620113.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
2300/99 Alcoy]
gi|187610281|sp|A5IHU3.1|PNP_LEGPC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148282855|gb|ABQ56943.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
str. Corby]
gi|295650314|gb|ADG26161.1| polyribonucleotide nucleotidyltransferase [Legionella pneumophila
2300/99 Alcoy]
Length = 729
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/688 (52%), Positives = 497/688 (72%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K +G++ + +E GE+ARQA +V+ S+ T +L TVV KD + +FFPLTV+Y
Sbjct: 3 KITKEIVFGNHNLILETGEVARQADGAVMASMNGTQVLVTVVWKKDGGESNDFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+PS+ ET+ISRLIDRPIRPLFP+ + NE+QI+ VLS+NP+
Sbjct: 63 QEKFYAIGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDNFFNEVQIIATVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ PDI ++IG S ALSIS +PF GP+G A+VGY DG Y+LNP+ ++ ++S LDL++AGT+
Sbjct: 123 VSPDIIAMIGASAALSISGVPFNGPIGAARVGYKDGVYLLNPSRKEQEESKLDLVIAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+++L EDI+ A+++GHE MK I +I EL + VG+ K W D L
Sbjct: 183 DAILMVESEAQELSEDIMRGAMLYGHEMMKNVIKSIEELAREVGKSKPEWKAPEIDTVLK 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCILYDLE 365
++I +++ +++ AY IK+KQ R + + S+L+ +N+ L D+ I + +LE
Sbjct: 243 ARINDVARNEVEAAYLIKDKQQRYQRLDELREQTISALLAENDELNADV--IANMFGELE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
I+R +ILD RID R +RPISIRT L RTHGS LFTRG+TQA+VVATLG RD
Sbjct: 301 RSIVRNRILDGEPRIDGRDHRTVRPISIRTKFLERTHGSCLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D + GE D FMLHYN PP++ G+ G++G PKRREIGHGRLAKRAL+ VLP+ N+F
Sbjct: 361 AQILDGISGESRDRFMLHYNFPPYSVGETGQVGSPKRREIGHGRLAKRALMAVLPDANEF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYVLRIVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A +G ++IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTEKGITALQMDIKISGITNEIMEQALEQALEGRTHILGVMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELS+ APR+ T+K+ KIR +IGKGG+TI+ L E TG IDI+D G+I + S +
Sbjct: 541 AEHRTELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDSGVIQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
++ +EA+++I+ L +++G+ Y G V ++ DFGA I +L GKDGLLHISQI + R
Sbjct: 601 KMALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICADRTQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ + L+E Q++ V V GID +GR+KL
Sbjct: 661 VEEVLQEGQEIEVFVAGIDKQGRVKLEW 688
>gi|270158094|ref|ZP_06186751.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
D-4968]
gi|289163641|ref|YP_003453779.1| polynucleotide phosphorylase [Legionella longbeachae NSW150]
gi|269990119|gb|EEZ96373.1| polyribonucleotide nucleotidyltransferase [Legionella longbeachae
D-4968]
gi|288856814|emb|CBJ10625.1| Polynucleotide phosphorylase (PNPase) [Legionella longbeachae
NSW150]
Length = 721
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/688 (52%), Positives = 487/688 (70%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K K +G + + +E GE+ARQA +V S+ T +LATVV KD FFPLTV+Y
Sbjct: 3 KFTKEIAFGDHTLILETGEVARQADGAVFASMNGTQVLATVVGKKDGGENSGFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+P+E ET+ISRLIDRPIRPLFPEG+ NE+Q++ VLS+NP+
Sbjct: 63 QEKFYAVGKIPGGFNKREGRPTELETLISRLIDRPIRPLFPEGFCNEVQVIATVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ PDI ++I S AL++S +PF GP+G A+VGY DG Y+LNP+ ++L+ S LDL+VAGT+
Sbjct: 123 VSPDIVAMIASSAALALSGVPFNGPIGAARVGYRDGIYLLNPSRKELEHSKLDLVVAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+K+L EDI+ AI+FGHE MK I AI EL G+ + +W P D L
Sbjct: 183 NAILMVESEAKELSEDIMRGAIMFGHEMMKNVIKAIEELAAQAGKTRWDWSPREVDVNLQ 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYDLE 365
S++ ++ +H++ AY IK+KQ R + ++L +NE L D+ I+ I +LE
Sbjct: 243 SRVSDMIKHEVEAAYLIKDKQERYQRLAELKDQTITALQAENEELNADV--ISNIFVELE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
S +R +ILD RID R +RPISIRT +L R HGS LFTRG+TQA+VVATLG RD
Sbjct: 301 SATVRNRILDGEPRIDGRDCKTVRPISIRTKLLERAHGSVLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D + GE D FMLHYN PP++ G+ G IG PKRREIGHGRLAKRA++ VLP +N F
Sbjct: 361 AQILDNITGESKDRFMLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRAIMAVLPESNDF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYVLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT +GITALQMDIKI GIT I++ AL +A +G YIL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTEHGITALQMDIKIQGITSAIMEQALDQALEGRMYILGVMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELS+ APR+ T+K+ KIR +IGKGG+TI+ L + TG IDI+D G++ + S +
Sbjct: 541 AEHREELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIDSTGVSIDIDDTGVVQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA+++I+ L +++G+ Y G V ++ DFGA I +L GKDGLLHISQI + R
Sbjct: 601 LQALEEAQKQIKSLIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICNDRAQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ L+E Q++ V V GID +GR+KL
Sbjct: 661 VDTVLQEGQEIEVFVAGIDKQGRVKLEW 688
>gi|407893228|ref|ZP_11152258.1| polynucleotide phosphorylase/polyadenylase [Diplorickettsia
massiliensis 20B]
Length = 693
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/686 (52%), Positives = 495/686 (72%), Gaps = 12/686 (1%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPT--STYNFFPLTVDYI 127
K F+ G++++++E G +ARQAT++V+V++E T +L TVV K +FFPLTV Y
Sbjct: 6 KVFELGTHQVTLETGTVARQATAAVVVTLEGTTVLVTVVGRKPSPHEKPSDFFPLTVHYQ 65
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E++YAAGR+PG +FKREG+P+E+E + SRLIDRPIRPLFPE + +E+QIV VLS NP+I
Sbjct: 66 ERSYAAGRVPGGYFKREGRPTEKEILTSRLIDRPIRPLFPETFRHEVQIVATVLSSNPEI 125
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
+ DI +++G S AL++S LPF GP+ +VGYI G Y LNPT + L+ S LDL+VAGTE
Sbjct: 126 NADIPAMLGASAALALSGLPFKGPIAAVRVGYIKGGYQLNPTFKALENSELDLVVAGTES 185
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VES++ +L ED +L AI+FGH+ M+ AI AI ELV G W +
Sbjct: 186 AVLMVESQAAELSEDAMLGAILFGHQTMQPAIQAIKELVAEAGNPSWEWS---------T 236
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+ + ++ YQ+ K R + + +D E + ++C L LE +
Sbjct: 237 PEASQPQAELESIYQVAEKISRKTQLDALQEKACQKWMDEEKGVTEKAVLDC-LAALEER 295
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
+R++IL+ RID R +RPI+I G LPRTHGS LFTRG+TQA+VVATLGT RD Q
Sbjct: 296 CVRERILNGLPRIDGRDQKTVRPITISPGFLPRTHGSVLFTRGETQAIVVATLGTDRDAQ 355
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
++AL GE ++FMLHYN PP++ G+ G++G PKRREIGHG LAKRAL VLP+ + F Y
Sbjct: 356 IVEALDGEGRETFMLHYNFPPYSVGETGQVGSPKRREIGHGNLAKRALRAVLPSESDFPY 415
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMA+VCG LAL+DAGVP+ + VAGIAMGL+K+ E+ +L+DILG
Sbjct: 416 VLRIVSEITESNGSSSMATVCGASLALMDAGVPLKKPVAGIAMGLVKEAERFAVLTDILG 475
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +AK+G +IL M +P
Sbjct: 476 DEDHLGDMDFKVAGTAEGITALQMDIKIDGITEEILRAALEQAKEGRHHILGVMNNVLPL 535
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ E+S +APR+ T+KI+P KIRD+IGKGG+TIR++TEETGT IDI+D+G++ I++ N
Sbjct: 536 PRIEVSPYAPRITTLKINPDKIRDLIGKGGATIRSITEETGTLIDISDDGLVRISTSNLQ 595
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ + A RI+K+T V++G++Y G V++L DFGA + IL G+DGL+HISQIS++RV +T
Sbjct: 596 ACEAALDRIKKVTAEVEVGRIYEGPVVKLTDFGAFVNILPGRDGLVHISQISNERVENVT 655
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D +KE Q V+VKVL +D +GR++L+M
Sbjct: 656 DKVKEGQIVKVKVLEVDRQGRVRLTM 681
>gi|422629075|ref|ZP_16694281.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. pisi str. 1704B]
gi|424073727|ref|ZP_17811142.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|440722187|ref|ZP_20902570.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
BRIP34876]
gi|440725899|ref|ZP_20906159.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
BRIP34881]
gi|443642367|ref|ZP_21126217.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
syringae B64]
gi|330937951|gb|EGH41738.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. pisi str. 1704B]
gi|407995539|gb|EKG36062.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|440361716|gb|ELP98933.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
BRIP34876]
gi|440367786|gb|ELQ04841.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
BRIP34881]
gi|443282384|gb|ELS41389.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
syringae B64]
Length = 701
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/691 (52%), Positives = 488/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+S I + I +AY I K R + I + L E + +++
Sbjct: 241 TELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|422615833|ref|ZP_16684540.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. japonica str. M301072]
gi|330895301|gb|EGH27639.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. japonica str. M301072]
Length = 701
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/691 (52%), Positives = 488/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSP 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+S I + I +AY I K R + I + L E + +++
Sbjct: 241 TELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|260913802|ref|ZP_05920277.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
ATCC 43325]
gi|260632115|gb|EEX50291.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
ATCC 43325]
Length = 666
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/638 (56%), Positives = 468/638 (73%), Gaps = 2/638 (0%)
Query: 118 NFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIV 177
+FFPLTV+Y E+ YAAGRIPG FFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NEIQIV
Sbjct: 6 DFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIV 65
Query: 178 VYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSH 237
V+SVNPQI PD+ ++IG S ALS+S +PF GP+G A+VG+ID +++LNPT + K+S
Sbjct: 66 ATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMNEQKQSR 125
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGT+KA++ VESE+ L E+ +L A++FGHE+ ++ I AI E G+ + +W
Sbjct: 126 LDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHEQQQVVIEAIKEFTAQAGKPRWDWV 185
Query: 298 PIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDIN 355
+ LI K+ I+E ++ +AY+I KQ R I D+ + + E +
Sbjct: 186 APEPNTALIEKVKAIAESRLGEAYRITEKQSRYEQIDAIKADVIAQITAEVAEGEEVSEG 245
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I I LES+I+R +IL+ RID R V+ +R + I TG+LPRTHGS++FTRG+TQAL
Sbjct: 246 KIIDIFTALESQIVRGRILNGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQAL 305
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VATLGT RD Q ID L GE +D F+ HYN PP++ G+ G IG PKRREIGHGRLAKR +
Sbjct: 306 AVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGV 365
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
V+P +F Y +R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 366 AAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 425
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
EK V+LSDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK
Sbjct: 426 DEKFVVLSDILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARL 485
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL M+ +P + ++S FAPR+ T+KIDP KI+DVIGKGG+TIR LTEETGT IDI+D
Sbjct: 486 HILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDD 545
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IA+ ++ S ++ RIE +T V+ G VY G V RL DFGA + I+ K+GL+HI
Sbjct: 546 DGTVKIAAVDANSAKDVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHI 605
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+L Q+V VKV+ ID +GRI+L+M
Sbjct: 606 SQIAEERVEKVSDYLAVGQEVSVKVVEIDRQGRIRLTM 643
>gi|331006254|ref|ZP_08329574.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC1989]
gi|330419943|gb|EGG94289.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC1989]
Length = 742
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/692 (51%), Positives = 483/692 (69%), Gaps = 6/692 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+F++G+ +++E G +ARQAT +VLVSI T +L TVV K FFPL+V
Sbjct: 1 MNPVTKTFQFGNDTVTLETGRVARQATGAVLVSIGKTQVLCTVVGAKQAEEGRGFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y+EKAYAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFP G++NE+Q+V V+S
Sbjct: 61 HYVEKAYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCMVVSAE 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI-DGKYILNPTTEQLKKSHLDLLVA 243
+DPDIA++IG S ALSIS +PF GP+G A+VGY + Y+LNP+ L +S LD++VA
Sbjct: 121 NDVDPDIAAMIGTSAALSISGIPFNGPIGGARVGYTQEAGYVLNPSYSALAESELDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ +LPEDI+L A++F H++ + + AI EL ++ G+ + W ++
Sbjct: 181 GTKDAVLMVESEASELPEDIMLGAVLFAHQECQAVVQAITELAKDAGKPRWEWSVAEENA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIR--DLTFKNISKDIYSSLIDNENLTIDINDINCIL 361
L + + I AY+ +K R LT S+D + + NE + + +
Sbjct: 241 ELKAAVAEQFGAAIADAYRTTDKMERYGKLT---ASRDEAVAALVNEEAGVTADAVKSAF 297
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
LE + +RK ++ RID R +R I + G+L + HGSSLFTRG+TQA+VVATLG
Sbjct: 298 SKLEKQTVRKSVVAGEPRIDGRDTTTVRGIDVEVGVLNKAHGSSLFTRGETQAIVVATLG 357
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
+RD Q IDAL GE D FMLHYN P ++ G+ GR+G RREIGHGRLA+R + VLP
Sbjct: 358 NARDSQIIDALEGERRDPFMLHYNFPSYSVGECGRMGSTSRREIGHGRLARRGVAAVLPT 417
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
F Y+IR+VSEITESNGSSSMASVCG LA++DAGVP+ VAGIAMGL+K+ +
Sbjct: 418 QEDFPYTIRIVSEITESNGSSSMASVCGASLAMMDAGVPLKAPVAGIAMGLVKEESGFAV 477
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
L+DILGDED GDMDFKVAGT GITALQMDIKI GIT +I++IAL +A + +IL +M
Sbjct: 478 LTDILGDEDHLGDMDFKVAGTAAGITALQMDIKIEGITEEIMEIALGQALQARLHILAEM 537
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + E+S+ APR TIK+DP KIRD+IGKGG+TIR++TEETG +DI+D G++ +
Sbjct: 538 NKVISTSRTEVSENAPRFETIKVDPDKIRDIIGKGGATIRSITEETGASVDIDDTGLVKV 597
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
+ ++ + Q A +I ++T +IG +Y G+V R+ DFGA + L GKDGL+HISQI+ +
Sbjct: 598 YAADNEALQAAMNKIGEITAEAEIGAIYEGVVARIVDFGAFVTFLPGKDGLVHISQIAEE 657
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RVN ++D+LKE Q V+VK L +D RGRIKLS+
Sbjct: 658 RVNAVSDYLKEGQTVKVKCLDVDQRGRIKLSI 689
>gi|110833194|ref|YP_692053.1| polynucleotide phosphorylase [Alcanivorax borkumensis SK2]
gi|123050749|sp|Q0VSR7.1|PNP_ALCBS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110646305|emb|CAL15781.1| polyribonucleotide nucleotidyltransferase [Alcanivorax borkumensis
SK2]
Length = 697
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/691 (51%), Positives = 483/691 (69%), Gaps = 1/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI K ++G +++E G+IARQAT++V+V I DT +L TVV K+ NFFPLT
Sbjct: 1 MFNKITKQIQFGRDTVTLETGQIARQATAAVMVRIGDTQVLVTVVGRKEANPGQNFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YA GRIPG F KREG+PSE+ET+ RLIDRPIRPLFP+G++NE+Q+V V+S
Sbjct: 61 VNYQEKTYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQVVATVMSS 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S ALSIS +PF GP+G A+VGY DG YILNP+ +L +S LDL+VA
Sbjct: 121 DKNRDPDIAALIGTSAALSISGIPFSGPIGAARVGYKDGMYILNPSYSELAESALDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+++L ED +L A++FGH +M+ I I E VG + +W P +++
Sbjct: 181 GTEPAVLMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTETWDWKPAEQNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
TL + I + + +AY I K R + + E+ + +++ +
Sbjct: 241 TLKAAIKDKFAAALGEAYTITEKMARYAKVGELRDACVAEFATGEDGAPEADEVKDLFGK 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R+ ++ RID R ++ +R I + G L +THGS+LFTRG+TQA+V ATLG
Sbjct: 301 IEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGM 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL G D FML YN PP+ G+ G IG PKRREIGHGRLA+R + V+P+
Sbjct: 361 RDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAVVPSVQ 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE-KVVIL 542
F Y+IR+VSEITESNGSSSMASVCG +AL+DAGVP++ VAGIAMGL+K+ + + +L
Sbjct: 421 DFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDGRYAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A G +IL +M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHILGEMN 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++E+S AP L+T+KI+P KIRDVIGKGG+TIR LTEETG IDI D+G + I
Sbjct: 541 KAIAESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTEETGCTIDIEDDGSVKIY 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
EA RR+E++T ++G +Y G V R+ DFGA + I+ G +GLLHISQI+ +R
Sbjct: 601 GETREKADEAVRRVEEITAEAEVGAIYEGKVTRVVDFGAFVAIMPGTEGLLHISQIAEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD++ E + ++VKVL +D RGRIKLSM
Sbjct: 661 VEKVTDYVNEGEIIKVKVLDVDQRGRIKLSM 691
>gi|406978716|gb|EKE00624.1| hypothetical protein ACD_21C00308G0007 [uncultured bacterium]
Length = 695
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/686 (52%), Positives = 491/686 (71%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
I K+F+YG +++E G IARQAT +V+VS+ D VIL T V+ KD +FFPLTV+Y
Sbjct: 4 IKKTFQYGEQIVTLETGAIARQATGAVMVSMGDAVILVTAVAKKDVAPNRDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YA G++PG F KRE +PS +ET+ISRLIDRP+RP FP+G++NE+Q++ ++S++P+I
Sbjct: 64 ERYYANGKLPGGFIKRESRPSTQETLISRLIDRPLRPSFPDGFMNEVQVIATLMSLDPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
D+ ++IG + AL IS +PF GPL A+VGY +G Y+LNP+++QLK S LDL+VAGT+
Sbjct: 124 SSDVLALIGAAAALEISGIPFNGPLAAARVGYKNGNYLLNPSSQQLKTSELDLVVAGTKN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
AI+ VESE+ +L E+I+L A++FGH +M++AI AI E ++VG KK + P LI+
Sbjct: 184 AILMVESEAHELNEEIMLGAVMFGHREMQVAIEAIKEFAEDVGAKKWQFTPSEAQHELIA 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+I E I AY+I +KQ+R I S + E+ + + ++++ES+
Sbjct: 244 QIKKDFEADIVAAYEITDKQVRYSKLGAIRDRAVSQFVTAESGSKTKEQVTNAVFEIESQ 303
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R +IL+ RID R +RPI I G+LPR HGS++FTRG+TQA+VV TL T Q
Sbjct: 304 VVRGRILNNLPRIDGRDKKTVRPIDISLGLLPRAHGSAVFTRGETQAIVVTTLATEGSAQ 363
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
ID GE + FMLHYN PP++TG++G + PKRREIGHG LAKRAL V+P +F Y
Sbjct: 364 IIDVPAGESKERFMLHYNFPPYSTGEVGMMVGPKRREIGHGNLAKRALQAVIPTQEEFPY 423
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+R+VSEITESNGSSSMASVCG L+L+DAGVPI VAGIAMGLIK+GE+ +L+DILG
Sbjct: 424 VLRVVSEITESNGSSSMASVCGASLSLMDAGVPIKSPVAGIAMGLIKEGERFAVLTDILG 483
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GITALQMDIKI GIT +I++IAL +AK+ +I M ++
Sbjct: 484 DEDHLGDMDFKVAGTAEGITALQMDIKIDGITEEIMRIALAQAKEARIHIFNLMHAKIAA 543
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ +S FAPR+ TI I+P KIRDVIGKGG TIR L EETG IDI D+G + +AS +
Sbjct: 544 PREHISDFAPRITTIHINPDKIRDVIGKGGVTIRGLVEETGAMIDIKDDGTVMVASADKE 603
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ EA RRI+ +T ++GK+Y G V R+ DFGA++ L KDGL+HISQI+++RVN +
Sbjct: 604 AAAEAIRRIQAITAEAEVGKIYAGKVTRIMDFGAVVSFLPNKDGLVHISQIANQRVNDVH 663
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D+LKE Q+V+VKV+ +D G+++LSM
Sbjct: 664 DYLKEGQEVKVKVIEVDRMGKVRLSM 689
>gi|440742398|ref|ZP_20921723.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
BRIP39023]
gi|440377235|gb|ELQ13884.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
BRIP39023]
Length = 701
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/691 (52%), Positives = 487/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+S I + I +AY I K R + I + L E + +++
Sbjct: 241 TELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|424069343|ref|ZP_17806789.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|407994910|gb|EKG35463.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
Length = 701
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/691 (52%), Positives = 487/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I K R + I + L E + +++
Sbjct: 241 TELLGAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|302185436|ref|ZP_07262109.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. syringae 642]
Length = 701
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/691 (52%), Positives = 487/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I K R + I + L E + +++
Sbjct: 241 TELLGAIRSEFGDAISQAYTITVKADRYARLGELKDQIVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|298157085|gb|EFH98174.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 701
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 487/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E + +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|422644493|ref|ZP_16707631.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. maculicola str. ES4326]
gi|330958045|gb|EGH58305.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 701
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 488/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E+ + +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLA-VEDGSPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|90022349|ref|YP_528176.1| polynucleotide phosphorylase/polyadenylase [Saccharophagus
degradans 2-40]
gi|122996024|sp|Q21H65.1|PNP_SACD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89951949|gb|ABD81964.1| Polyribonucleotide nucleotidyltransferase [Saccharophagus degradans
2-40]
Length = 722
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/689 (51%), Positives = 483/689 (70%), Gaps = 2/689 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N +IK F+YG+ +++E G IARQA+ +VL S+ T +L V K+ +FFPL+V
Sbjct: 14 NPVIKKFQYGNDTVTLETGRIARQASGAVLASMGQTSVLVAVTGSKEAKPGQDFFPLSVH 73
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EKAYAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFP G+LNE+Q+V V+S
Sbjct: 74 YQEKAYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFLNEVQVVCTVISAEK 133
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI-DGKYILNPTTEQLKKSHLDLLVAG 244
+DPDI ++IG S AL+IS +PF GP+G A+VGY + Y+LNPT LK S LD++VAG
Sbjct: 134 DVDPDIVAMIGTSAALAISGIPFNGPIGAARVGYTQESGYLLNPTYSTLKTSELDMVVAG 193
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+K+LPEDI+L A+++ H++M+ + A+ EL ++ + +W P +
Sbjct: 194 TADAVLMVESEAKELPEDIMLGAVLYAHQEMQAVVQAVAELAKDAAKPVWDWKPEEVNAE 253
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
L +K+ + + AY+I +KQ R + + L E+ + +++ + +
Sbjct: 254 LKAKVEHGFADSVGVAYRITDKQKRYDRLSELRNQAVAELATEES-GVSADEVKGLFAKI 312
Query: 365 ESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
E +I+R +++ RID R +RP+ + G+LP+ HGS+LFTRG+TQALVV+TLG++R
Sbjct: 313 EKQIVRSRVVAGEPRIDGRDSKTVRPLHVEVGVLPKVHGSALFTRGETQALVVSTLGSAR 372
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D Q IDAL GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + VLP
Sbjct: 373 DAQIIDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGIGAVLPKEED 432
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ +L+D
Sbjct: 433 FPYTMRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEDNGFAVLTD 492
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++IAL +A +IL +M
Sbjct: 493 ILGDEDHLGDMDFKVAGTADGVTALQMDIKIEGITEEIMEIALGQAMDARLHILAEMNRV 552
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ELS+ AP+ T+KIDP KIRD+IGKGG+TIR++TEETG IDI+D G I I +
Sbjct: 553 IASPRKELSENAPQFHTMKIDPDKIRDIIGKGGATIRSITEETGASIDIDDNGTIKIYAD 612
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
+ Q A RIE++T +IG VY G V+R+ DFGA + L GKDGL+HISQI+ +RV
Sbjct: 613 DGDGMQAAIARIEEITAEAEIGAVYQGKVVRIVDFGAFVNFLPGKDGLVHISQIAHERVQ 672
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+LKE Q + VK + ID RGRIKLS+
Sbjct: 673 NVSDYLKEGQDIEVKCMDIDQRGRIKLSI 701
>gi|66047403|ref|YP_237244.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. syringae B728a]
gi|75500706|sp|Q4ZNR6.1|PNP_PSEU2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|63258110|gb|AAY39206.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
syringae B728a]
Length = 701
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 488/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E+ + +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLA-VEDGSPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYIGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|71734516|ref|YP_276307.1| polynucleotide phosphorylase [Pseudomonas syringae pv. phaseolicola
1448A]
gi|257482257|ref|ZP_05636298.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tabaci str. ATCC 11528]
gi|289627537|ref|ZP_06460491.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aesculi str. NCPPB 3681]
gi|289646965|ref|ZP_06478308.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aesculi str. 2250]
gi|422583418|ref|ZP_16658543.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|422596763|ref|ZP_16671042.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|422604997|ref|ZP_16677012.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. mori str. 301020]
gi|422682162|ref|ZP_16740429.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|123747552|sp|Q48E81.1|PNP_PSE14 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71555069|gb|AAZ34280.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|330868250|gb|EGH02959.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330888654|gb|EGH21315.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. mori str. 301020]
gi|330987059|gb|EGH85162.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|331011503|gb|EGH91559.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tabaci str. ATCC 11528]
Length = 701
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 487/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E + +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|416018552|ref|ZP_11565480.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. glycinea str. B076]
gi|416025188|ref|ZP_11568969.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. glycinea str. race 4]
gi|422403918|ref|ZP_16480974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. glycinea str. race 4]
gi|320322524|gb|EFW78617.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. glycinea str. B076]
gi|320330007|gb|EFW85994.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330875199|gb|EGH09348.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. glycinea str. race 4]
Length = 701
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 487/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E + +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYTRLGELKDQVVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|359394194|ref|ZP_09187247.1| Polyribonucleotide nucleotidyltransferase [Halomonas boliviensis
LC1]
gi|357971441|gb|EHJ93886.1| Polyribonucleotide nucleotidyltransferase [Halomonas boliviensis
LC1]
Length = 722
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/693 (50%), Positives = 495/693 (71%), Gaps = 5/693 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N + K+F+YG +++E G IARQAT +V+V+++DTV+L TVV+ KD + FFPL+V
Sbjct: 8 NPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVARKDANPSQPFFPLSVH 67
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YA G+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ VLS +
Sbjct: 68 YQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDR 127
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVAG 244
DPD+A+++G S ALSIS +PF GP+G A+VG+ + K Y LNPT E+LK S LD++VAG
Sbjct: 128 NHDPDVAAMLGTSAALSISGVPFNGPIGCARVGFNEEKGYFLNPTVEELKSSELDMVVAG 187
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+++L ED +L A++FGH++M++AI+AINELV G+ + W +++
Sbjct: 188 TDKAVLMVESEAQELLEDEMLGAVLFGHQEMQVAISAINELVAEAGKPRWEWQAAEENQA 247
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTID----INDINCI 360
L + + + E K+ +AY+I +K R + + + L+ E + +D+
Sbjct: 248 LKAAMGDAFEAKVGEAYRITDKMARQDALSALKDEAVALLVAAEGEEPEGKFAKDDVKGA 307
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
LE +++R +++ RID R +RP++I G LP+THGS++FTRG+TQA+ +ATL
Sbjct: 308 FASLEKRVVRSRVVKGEPRIDGRDNQTVRPLAIEVGTLPKTHGSAIFTRGETQAIAIATL 367
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT RD Q I++L GE D FMLHYN PP+ G+ G G PKRREIGHGRLA+R + +LP
Sbjct: 368 GTLRDSQLIESLEGERKDRFMLHYNFPPYCVGEAGFFGGPKRREIGHGRLARRGVQAMLP 427
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+ + F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+KD +
Sbjct: 428 SEDVFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDPDGFA 487
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+L+DILGDED GDMDFKVAG+ G+TALQMDIKI GI +I+++AL +A ILE+
Sbjct: 488 VLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMELALQQALTARLSILEQ 547
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + ++++S AP + TIKIDP KIRDVIGKGG+ IR + E+TG ID++D+G +
Sbjct: 548 MNVVISQSRSDVSDNAPSMATIKIDPDKIRDVIGKGGAMIRKICEDTGASIDLDDDGTVR 607
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I + + + + A + +T +IGK+Y G V+R+ DFGA + I+ G DGL+HISQI +
Sbjct: 608 IYAEDKAAAKRAIDTVLSITAEAEIGKLYMGKVVRIADFGAFVNIMPGTDGLVHISQIVA 667
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RVN + DFL E V VKVL ID+R R+KLSM
Sbjct: 668 ERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSM 700
>gi|339489437|ref|YP_004703965.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida S16]
gi|338840280|gb|AEJ15085.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida S16]
Length = 701
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 484/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+K+L ED +L A++F H++ + I A+ EL G+ +W P +
Sbjct: 181 AGTESAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWQPAPAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ + + +AY I K R + +D + + NE I I
Sbjct: 241 VELMNLVRAEFGEAVSQAYTITQKADRYNRLGQL-RDEAVARLSNEETGPSAGAIKEIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+LE + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 ELEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R + +LP++
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVQAMLPSD 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 420 SEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIAQSRSELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|410089662|ref|ZP_11286275.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas viridiflava
UASWS0038]
gi|409763049|gb|EKN48037.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas viridiflava
UASWS0038]
Length = 701
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 486/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K ++ FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADASKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + I + L E + +++
Sbjct: 241 TALLGAIRAEFGEAISQAYTITIKADRYARLGELREQIVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|422637906|ref|ZP_16701338.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
Cit 7]
gi|330950302|gb|EGH50562.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
Cit 7]
Length = 701
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 487/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+S I + I +AY I K R + I + L E + +++
Sbjct: 241 TELLSAIRSEFGEAISQAYTITVKADRYARLGELKDQIVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q ++ L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLNTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|422671917|ref|ZP_16731282.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aceris str. M302273]
gi|330969656|gb|EGH69722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. aceris str. M302273]
Length = 701
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/691 (52%), Positives = 488/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E+ + +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLA-VEDGSPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V V+ +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVMDVDNRGRIKLSI 690
>gi|374263794|ref|ZP_09622341.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
LLAP12]
gi|363535916|gb|EHL29363.1| polynucleotide phosphorylase/polyadenylase [Legionella drancourtii
LLAP12]
Length = 719
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/688 (53%), Positives = 486/688 (70%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
KI K +G + + +E GEIARQA +VL S+ T +L TVV K+ +FFPLTV+Y
Sbjct: 3 KITKEIAFGDHTLVLETGEIARQADGAVLASMNGTQVLVTVVGKKEGGEGNDFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+PSE ET+ISRLIDRPIRPLFP+ + NE+QI+ VLS+NP+
Sbjct: 63 QEKFYAVGKIPGGFNKREGRPSENETLISRLIDRPIRPLFPDNFTNEVQIIATVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
I DI ++IG S AL+IS +PF GP+G A+VGY DG Y+LNP+ + L++S LDL+VAGT+
Sbjct: 123 ISSDIIAMIGASAALAISGVPFNGPIGAARVGYKDGVYLLNPSRKALEESKLDLVVAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+K+L ED++ AI+FGHE MK I AI EL G+ + +W D+ L
Sbjct: 183 DAILMVESEAKELSEDVMRGAIMFGHEMMKSVIKAIEELAGEAGKARWDWAAPAVDENLQ 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCILYDLE 365
+I +I++H + AY IK+KQ R + + ++L+ +NE L D+ I + DLE
Sbjct: 243 VRIADIAKHDVEAAYLIKDKQERYQRLGVLKEQTIAALLAENEELKADV--IGNMFGDLE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+R +ILD RID R +RPI++RT +L RTHGS LFTRG+TQA+VVATLG RD
Sbjct: 301 RATVRTRILDGEPRIDGRDHKTVRPIAVRTKLLERTHGSCLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D + E D FMLHYN PP++ G+ G +G PKRREIGHGRLAKRALL VLP + F
Sbjct: 361 AQMLDGINVESKDRFMLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRALLAVLPEASAF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYVLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRFAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A G +IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTEQGITALQMDIKITGITSEIMEQALEQALAGRIHILGIMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELS+ APR+ T+K+ KIR +IGKGG+TI+ L E TG IDI+D G++ + S +
Sbjct: 541 AEHREELSQHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDTGVVQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA+++I+ L V++G+ Y G V ++ DFGA I +L GKDGLLHISQI + R
Sbjct: 601 MDALEEAQKQIKALIAEVEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICNDRAQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE Q++ V V G+D +GR+KL
Sbjct: 661 VEDVLKEGQEIEVFVAGVDKQGRVKLEW 688
>gi|330807487|ref|YP_004351949.1| polyribonucleotide nucleotidyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|378948811|ref|YP_005206299.1| hypothetical protein PSF113_0874 [Pseudomonas fluorescens F113]
gi|423695300|ref|ZP_17669790.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
Q8r1-96]
gi|327375595|gb|AEA66945.1| Putative polyribonucleotide nucleotidyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|359758825|gb|AEV60904.1| Pnp [Pseudomonas fluorescens F113]
gi|388009158|gb|EIK70409.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
Q8r1-96]
Length = 701
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/691 (52%), Positives = 482/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQAEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E +D+
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SASDVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|431804505|ref|YP_007231408.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
HB3267]
gi|430795270|gb|AGA75465.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
HB3267]
Length = 701
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 485/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+K+L ED +L A++F H++ + I A+ EL G+ +W P +
Sbjct: 181 AGTESAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWQPAPAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ + + +AY I K R + +D + + NE + I I
Sbjct: 241 VELMNLVRAEFGEAVSQAYTIIQKADRYNRLGQL-RDEAVARLSNEETGPSASAIKEIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+LE + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 ELEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R + +LP++
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVQAMLPSD 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 420 SEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIAQSRSELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|28871621|ref|NP_794240.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213966643|ref|ZP_03394794.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
tomato T1]
gi|301383153|ref|ZP_07231571.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tomato Max13]
gi|302061771|ref|ZP_07253312.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tomato K40]
gi|302133785|ref|ZP_07259775.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|422650896|ref|ZP_16713696.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. actinidiae str. M302091]
gi|422658032|ref|ZP_16720469.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. lachrymans str. M302278]
gi|81729685|sp|Q87WQ8.1|PNP_PSESM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|28854873|gb|AAO57935.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213928493|gb|EEB62037.1| polyribonucleotide nucleotidyltransferase [Pseudomonas syringae pv.
tomato T1]
gi|330963979|gb|EGH64239.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. actinidiae str. M302091]
gi|331016652|gb|EGH96708.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. lachrymans str. M302278]
Length = 701
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/691 (52%), Positives = 486/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E + ++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEG-SPSAGEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE ++V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGEEVEVLVLDVDNRGRIKLSI 690
>gi|402701801|ref|ZP_10849780.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fragi A22]
Length = 701
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 480/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGSKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V VLS
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVLST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPD+A++IG S AL+IS +PF GP+G A+V Y + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDVAAMIGTSAALAISGIPFDGPIGAARVAYHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ I A+ EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVIQAVKELAAEAAKPTWDWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ I I +AY + K R + + + L E ++
Sbjct: 241 TALLAAIRAEFGEAISQAYTLTVKHERYARLGELKDQVVAKLSGEEGQPTS-AEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALDARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIAVSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+YTG V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYTGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398998986|ref|ZP_10701740.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM18]
gi|398132827|gb|EJM22084.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM18]
Length = 701
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/691 (52%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQAEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E D+
Sbjct: 241 TELLGAIRAEFGEAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQP-SAADVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|422300027|ref|ZP_16387570.1| polyribonucleotide nucleotidyltransferase [Pseudomonas avellanae
BPIC 631]
gi|407987904|gb|EKG30578.1| polyribonucleotide nucleotidyltransferase [Pseudomonas avellanae
BPIC 631]
Length = 701
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/691 (52%), Positives = 486/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E + ++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEG-SPSAGEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 HIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE ++V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGEEVEVLVLDVDNRGRIKLSI 690
>gi|404400415|ref|ZP_10991999.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas
fuscovaginae UPB0736]
Length = 701
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/691 (52%), Positives = 484/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ + I A+ EL + +W P +
Sbjct: 181 AGTAEAVLMVESEAKELTEDQMLGAVLFAHDEFQSVIQAVKELAAEAAKPTWSWAPQAEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E D+
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SAADVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGSSLFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDNRTVRPLNIEVGVLPKTHGSSLFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP++
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPSD 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 SEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP +I++KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIGQSRSELSSNAPTMISMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|421502080|ref|ZP_15949036.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
DLHK]
gi|187611322|sp|A4XYD6.2|PNP_PSEMY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|400347364|gb|EJO95718.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
DLHK]
Length = 702
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/691 (51%), Positives = 479/691 (69%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK FK+G +++E G IARQA+ +VLV+++ D +L TVV K + FFPL+
Sbjct: 1 MNPVIKQFKFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIAS+IG S AL++S +PF GP+G A+V + D Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIASMIGTSAALAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+ +L ED +L A++F H++ + I A+ E G+ NW +
Sbjct: 181 AGTETAVLMVESEADELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPTWNWQAPAAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I KQ R + + + ++L +++
Sbjct: 241 TPLLDAIRSQFGEAISQAYTITIKQDRYNRLDELREQVIAALAGEGEGKFAADEVKAAFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I+D RID R +RP+ I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 301 EIEYRTVRQNIVDGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R + +LP +
Sbjct: 361 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVAAMLPKD 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+ +GEK +L
Sbjct: 421 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A + IL +M
Sbjct: 481 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMN 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 541 QVISQSRTELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S +R
Sbjct: 601 GETKDAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQR 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 661 VEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 691
>gi|429210157|ref|ZP_19201324.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. M1]
gi|428158931|gb|EKX05477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. M1]
Length = 701
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/690 (52%), Positives = 484/690 (70%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K F++G +++E G IARQAT +VLV+++D +L TVV K FFPL+V
Sbjct: 1 MNPVTKKFQFGQSTVTLETGRIARQATGAVLVTMDDVTVLVTVVGAKQADPNKGFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTG 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S AL+IS +PF GP+G A+VG+ + YILNPT EQL+ S LD++VA
Sbjct: 121 KKTDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEVGYILNPTYEQLQSSSLDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+ +L ED +L A+++ HE+ + I A+ EL G+ NW ++
Sbjct: 181 GTSDAVLMVESEADELTEDQMLGAVLYAHEEFQAVIRAVAELATEAGKPSWNWSAPAENT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
LI I I AY I KQ R + ++I + +++ +
Sbjct: 241 ALIEAIKAEFGAAISDAYTITIKQERYAALDALREEIVARFAGEGEGQYSASEVKDVFGL 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE + +R+ I++ RID R +RP+ I G+L +THGS+LFTRG+TQALVVATLGT+
Sbjct: 301 LEYRTVRENIVNGKPRIDGRDTRTVRPLKIEVGVLGKTHGSALFTRGETQALVVATLGTA 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L GE D FMLHYN PPF+ G+ GR+G P RREIGHGRLA+R + +LP+ +
Sbjct: 361 RDAQLLDTLEGERKDPFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPSQD 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVRAPVAGIAMGLVKEGDKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 481 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALEQALEARLNILGQMNQ 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + ELS+ AP ++++KIDP KIRDVIGKGG+TIR + EET IDI D+G + I
Sbjct: 541 VIAQPRAELSENAPTMLSMKIDPDKIRDVIGKGGATIRGICEETKASIDIEDDGSVKIYG 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS KR+
Sbjct: 601 ETKEAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD LKE ++V+V VL +D+RGRIKLS+
Sbjct: 661 DKVTDVLKEGEEVKVLVLDVDNRGRIKLSI 690
>gi|237798567|ref|ZP_04587028.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331021420|gb|EGI01477.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 701
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/691 (52%), Positives = 486/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G + +E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVILETGRIARQASGAVLVTVDDDVSVLVTVVGAKHADAGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ +IDPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INAI EL + +W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWDWQPKPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E + +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEG-SPSASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +NELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GESKEAAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE ++V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGEEVEVLVLDVDNRGRIKLSI 690
>gi|254428432|ref|ZP_05042139.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
gi|196194601|gb|EDX89560.1| 3' exoribonuclease family, domain 2 [Alcanivorax sp. DG881]
Length = 697
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/691 (51%), Positives = 482/691 (69%), Gaps = 1/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNKI K ++G +++E G+IARQAT++V+V I DT +L TVV K+ + NFFPLT
Sbjct: 1 MFNKITKQIQFGRDTVTLETGQIARQATAAVMVRIGDTEVLVTVVGRKEADPSKNFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YA GRIPG F KREG+PSE+ET+ RLIDRPIRPLFP G++NE+Q+V V+S
Sbjct: 61 VNYQEKTYATGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQVVATVMSS 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIA++IG S ALSIS +PF GP+G A+VGY DG YILNP+ +L +S LDL+VA
Sbjct: 121 DKNRDPDIAALIGTSAALSISGIPFNGPIGAARVGYKDGMYILNPSYSELAESALDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+++L ED +L A++FGH +M+ I I E VG + +W P +++
Sbjct: 181 GTEPAVLMVESEAQELSEDQMLGAVLFGHMEMQPLIQGIKEFAAEVGTETWDWKPAEQNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
TL + I + + +AY I K R + + + E + ++ +
Sbjct: 241 TLKAAIKDKFGAALGEAYTITEKMARYAKVGELREACVAEFATGEEGAPEAGEVKELFGK 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R+ ++ RID R ++ +R I + G L +THGS+LFTRG+TQA+V ATLG
Sbjct: 301 IEKSVVREAVVSGKPRIDGRALDAVRAIDCQVGTLAKTHGSALFTRGETQAIVTATLGGM 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL G D FML YN PP+ G+ G IG PKRREIGHGRLA+R + V+P+
Sbjct: 361 RDAQFIDALEGSHQDHFMLQYNFPPYCVGETGFIGSPKRREIGHGRLARRGVEAVVPSVQ 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE-KVVIL 542
F Y++R+VSEITESNGSSSMASVCG +AL+DAGVP++ VAGIAMGL+K+ + + +L
Sbjct: 421 DFPYTVRVVSEITESNGSSSMASVCGTSMALMDAGVPLTAPVAGIAMGLVKEEDGRFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A G +IL +M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTARGVTALQMDIKIEGITEEIMEKALNQANAGRLHILGEMN 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++E+S AP L+T+KI+P KIRDVIGKGG+TIR LT+ETG IDI D+G + I
Sbjct: 541 KAISESRSEVSDNAPTLLTLKINPDKIRDVIGKGGATIRALTDETGCTIDIEDDGSVKIY 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
EA RR+E++T ++G +Y G V R+ DFGA + I+ G +GLLHISQI+ +R
Sbjct: 601 GETREKADEAVRRVEEITAEAEVGVIYEGKVTRVVDFGAFVAIMPGTEGLLHISQIAEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD++ E + ++VKVL +D RGRIKLSM
Sbjct: 661 VEKVTDYVNEGEIIKVKVLDVDQRGRIKLSM 691
>gi|399004745|ref|ZP_10707354.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM17]
gi|398128885|gb|EJM18265.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM17]
Length = 701
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE+A++ VESE+K+L ED +L A++F H++ + I A+ EL + +W P +
Sbjct: 181 AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I K R + + + L E D+
Sbjct: 241 TDLLGAIRSEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SAGDVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398840272|ref|ZP_10597509.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM102]
gi|398110860|gb|EJM00754.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM102]
Length = 701
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E ++
Sbjct: 241 TALLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPTS-AEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|146308619|ref|YP_001189084.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
ymp]
gi|145576820|gb|ABP86352.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas mendocina
ymp]
Length = 725
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/690 (51%), Positives = 479/690 (69%), Gaps = 2/690 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLTV 124
N +IK FK+G +++E G IARQA+ +VLV+++ D +L TVV K + FFPL+V
Sbjct: 25 NPVIKQFKFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLSV 84
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S +
Sbjct: 85 HYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTS 144
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLVA 243
+ DPDIAS+IG S AL++S +PF GP+G A+V + D Y+LNP EQLK S LD++VA
Sbjct: 145 KKTDPDIASMIGTSAALAVSGIPFNGPIGAARVAFHPDTGYLLNPNYEQLKASSLDMVVA 204
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+ +L ED +L A++F H++ + I A+ E G+ NW +
Sbjct: 205 GTETAVLMVESEADELTEDQMLGAVLFAHQEFQAVIQAVKEFAAEAGKPTWNWQAPAANT 264
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ I + I +AY I KQ R + + + ++L +++ +
Sbjct: 265 PLLDAIRSQFGEAISQAYTITIKQDRYNRLDELREQVIAALAGEGEGKFAADEVKAAFGE 324
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E + +R+ I+D RID R +RP+ I G+L +THGS+LFTRG+TQALVVATLGT+
Sbjct: 325 IEYRTVRQNIVDGKPRIDGRDTRTVRPLKIEVGVLDKTHGSALFTRGETQALVVATLGTA 384
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R + +LP ++
Sbjct: 385 RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVAAMLPKDD 444
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+ +GEK +L+
Sbjct: 445 EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVLT 504
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A + IL +M
Sbjct: 505 DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMNQ 564
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 565 VISQSRTELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG 624
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S +RV
Sbjct: 625 ETKDAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRV 684
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 685 EKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 714
>gi|398856614|ref|ZP_10612334.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM79]
gi|398243001|gb|EJN28600.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM79]
Length = 701
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 482/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + ++L E ++
Sbjct: 241 TALLGAIRAEFGEAISQAYTITIKADRYARLGELKDQVVANLSGEEGQPTS-AEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|423093477|ref|ZP_17081273.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
Q2-87]
gi|397885020|gb|EJL01503.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
Q2-87]
Length = 701
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E ++
Sbjct: 241 TALLGAIRAEFGEAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQP-SAAEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|425897485|ref|ZP_18874076.1| polyribonucleotide nucleotidyltransferase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397891506|gb|EJL07984.1| polyribonucleotide nucleotidyltransferase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 701
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 480/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE+A++ VESE+K+L ED +L A++F H++ + I A+ EL + +W P +
Sbjct: 181 AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I K R + + + L E D+
Sbjct: 241 TDLLGAIRSEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SAADVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|389683201|ref|ZP_10174533.1| polyribonucleotide nucleotidyltransferase [Pseudomonas chlororaphis
O6]
gi|388552714|gb|EIM15975.1| polyribonucleotide nucleotidyltransferase [Pseudomonas chlororaphis
O6]
Length = 701
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 480/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE+A++ VESE+K+L ED +L A++F H++ + I A+ EL + +W P +
Sbjct: 181 AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E D+
Sbjct: 241 TDLLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SAADVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398898703|ref|ZP_10648504.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM50]
gi|398183765|gb|EJM71238.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM50]
Length = 701
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E ++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPTS-AEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398875194|ref|ZP_10630373.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM67]
gi|398881608|ref|ZP_10636596.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM60]
gi|398201021|gb|EJM87913.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM60]
gi|398208314|gb|EJM95049.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM67]
Length = 701
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 482/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSS-SEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|386022048|ref|YP_005940073.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
DSM 4166]
gi|327482021|gb|AEA85331.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
DSM 4166]
Length = 701
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/691 (51%), Positives = 485/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+K+L ED +L A++F H++ + I A+ EL G+ + +W +
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I KQ R + + + + E D+
Sbjct: 241 TALLDAIRSEFGAAISEAYTITIKQQRYARLDELREQVVAKFSGEEGQP-SAGDVKDAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D+FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LP+
Sbjct: 360 ARDAQLLDTLEGEKKDAFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS +R
Sbjct: 600 GETKEAAEAAKQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 660 IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 690
>gi|339495430|ref|YP_004715723.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
ATCC 17588 = LMG 11199]
gi|338802802|gb|AEJ06634.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
ATCC 17588 = LMG 11199]
Length = 701
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/691 (51%), Positives = 485/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL++S +PF GP+G A+V + + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+K+L ED +L A++F H++ + I A+ EL G+ + +W +
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I KQ R + + + + E ++
Sbjct: 241 TALLDAIRSEFGAAISEAYTITIKQQRYARLDELREQVVAKFSGEEGQP-SAGEVKDAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D+FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LPN
Sbjct: 360 ARDAQLLDTLEGEKKDAFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPNA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS +R
Sbjct: 600 GETKEAAEAAKQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 660 IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 690
>gi|388259472|ref|ZP_10136645.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio sp. BR]
gi|387936910|gb|EIK43468.1| polynucleotide phosphorylase/polyadenylase [Cellvibrio sp. BR]
Length = 708
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/690 (51%), Positives = 484/690 (70%), Gaps = 2/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N IIK F+YG+ +++E G IARQAT +V+ ++ + +L TVV K + +FFPL+V
Sbjct: 1 MNPIIKKFQYGNQTVTLETGRIARQATGAVMATMGEVSVLCTVVGAKQASPGQDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK+YAAGRIPG + KREG+PSE+ET+ SRLIDRPIRPLFPEG+LNE+Q+V V+S +
Sbjct: 61 HYQEKSYAAGRIPGGYLKREGRPSEKETLTSRLIDRPIRPLFPEGFLNEVQVVCTVVSTD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVA 243
Q DPDI ++IG S AL+IS +PF GP+G A+VGY + YILNP+ +QL+ S LD++VA
Sbjct: 121 KQYDPDIVAMIGTSAALAISGIPFNGPIGGARVGYTQEEGYILNPSFKQLETSELDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+K+LPEDI+L A+++ H++M+ + A EL ++ G+ + W P+
Sbjct: 181 GTKDAVLMVESEAKELPEDIMLGAVLYAHQEMQAVVQACVELARDAGKPRWEWQPVAVKA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L ++ I AY+I +K R + + L E +++
Sbjct: 241 GLTDALLKGFGDSIGMAYRITDKAKRYDRLGELRNQAVAELA-TEATGFTADEVKAEFGM 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E +++R +I+ RID R +RPI + G+L + HGS+LFTRG+TQALVVATLG +
Sbjct: 300 VEYRLVRSRIVAGEPRIDGRDNKTVRPIQVEVGVLGKAHGSALFTRGETQALVVATLGNA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q ID L G D+FMLHYN PPF+ G+ GR+G RREIGHGRLA+R + VLP +
Sbjct: 360 RDAQIIDFLEGSKKDAFMLHYNFPPFSVGECGRMGATGRREIGHGRLARRGVTSVLPKES 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F Y++R+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+ +L+
Sbjct: 420 DFPYTLRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEANGFAVLT 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++IAL +A +IL +M
Sbjct: 480 DILGDEDHLGDMDFKVAGTTSGVTALQMDIKIEGITEEIMEIALEQALAARLHILGEMNK 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+P ++ +S+ APR TIKI P KIRD+IGKGG+TIR +TEETG+ IDI+D+G + I +
Sbjct: 540 VLPSSRSVVSENAPRFETIKIHPDKIRDIIGKGGATIRAITEETGSSIDIDDDGTVKIYA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N+ + Q A R+ + +IG +Y G V+R+ DFGA + L GKDGL+HISQI+ +RV
Sbjct: 600 DNNDALQAAILRVMGIVAEAEIGAIYEGTVVRIVDFGAFVNFLPGKDGLVHISQIADERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N ++D+LKE Q V+VK L +D RGRIKLS+
Sbjct: 660 NSVSDYLKEGQIVKVKCLDVDQRGRIKLSI 689
>gi|398938764|ref|ZP_10668066.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp.
GM41(2012)]
gi|398165236|gb|EJM53356.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp.
GM41(2012)]
Length = 701
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 480/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ K S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E ++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPTS-AEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSIAAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398976126|ref|ZP_10686088.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM25]
gi|398139678|gb|EJM28673.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM25]
Length = 701
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 480/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ I + I +AY I K R + + + L E +D+
Sbjct: 241 TELLAAIRSEFGEAISQAYTITIKADRYARLGELRDQVVAKLSGEEGQP-SASDVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398992974|ref|ZP_10695933.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM21]
gi|398136051|gb|EJM25152.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM21]
Length = 701
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ K S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSS-SEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSIAAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398891843|ref|ZP_10645117.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM55]
gi|398186400|gb|EJM73776.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM55]
Length = 701
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 477/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ + I A+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWTWAPQAEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E D+
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SAADVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|407366502|ref|ZP_11113034.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mandelii
JR-1]
Length = 701
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ K S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT +A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E +++
Sbjct: 241 TALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSS-SEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSIAAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|407697671|ref|YP_006822459.1| polyribonucleotide nucleotidyltransferase [Alcanivorax dieselolei
B5]
gi|407255009|gb|AFT72116.1| Polyribonucleotide nucleotidyltransferase [Alcanivorax dieselolei
B5]
Length = 697
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/691 (51%), Positives = 480/691 (69%), Gaps = 1/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K +YG+ + +E G+IARQAT++V+V+I DT +L TVV K+ FFPLT
Sbjct: 1 MFNIVRKEIQYGADTVVLETGQIARQATAAVMVTIGDTQVLVTVVGKKEADPGKGFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK Y+ GRIPG F KREG+PSE+ET+ RLIDRPIRPLFP G++NE+QIV V+S
Sbjct: 61 VNYQEKTYSTGRIPGGFLKREGRPSEKETLTCRLIDRPIRPLFPNGFMNEVQIVATVMSS 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
N DPDIA++IG S AL+IS +PF GP+G A+VG+ DG Y+LNP+ +L+ S L+L+VA
Sbjct: 121 NKNQDPDIAAMIGTSAALAISGIPFNGPIGAARVGFKDGMYLLNPSYSELEDSLLNLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+++L ED +L A+++GH++M+ I I Q VG W ++
Sbjct: 181 GTEPAVLMVESEAQELSEDQMLGAVLYGHQEMQTVIQGIKAFAQEVGAPAWEWQAPAENA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L + I E + +AY I KQ R + + + ++ + + ++ +
Sbjct: 241 ELKAAIKAKYEGALAEAYTITEKQARYTKVGELRDACVAEFVTDDENSPEAGEVKSLFGK 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R+ +L RID R ++ +R I + G L +THGS+LFTRG+TQA+V ATLG
Sbjct: 301 IEKNVVREGVLSGKSRIDGRALDQVRAIDCKVGFLNKTHGSALFTRGETQAIVTATLGGM 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL G D FML YN PP+ G+ G IG PKRREIGHGRLA+R + V+PN
Sbjct: 361 RDAQFIDALEGSRQDHFMLQYNFPPYCVGETGMIGSPKRREIGHGRLARRGVEAVVPNEK 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE-KVVIL 542
F Y+IR+VSEITESNGSSSMASVCG +AL+DAGVP+S VAGIAMGL+K+ + + +L
Sbjct: 421 DFPYTIRVVSEITESNGSSSMASVCGTSMALMDAGVPLSAPVAGIAMGLVKEEDGRFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A++G +IL +M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTERGVTALQMDIKIEGITEEIMEKALEQAQRGRLHILGEMA 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++E+S AP L+T+KI+ KIRDVIGKGG+ IR LTEET IDI D+G I I
Sbjct: 541 KAISVSRDEVSDNAPTLLTMKINSEKIRDVIGKGGAVIRALTEETSCTIDIEDDGSIKIY 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ EA+RRIE++T ++ K+Y G V R+ DFGA +RI+ G +GLLHISQI+ +R
Sbjct: 601 GETREAALEAQRRIEEITAEAEVDKIYEGEVTRVVDFGAFVRIMPGTEGLLHISQIAEER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D++KE +RVKVL +D RGRIKLSM
Sbjct: 661 VEKVSDYVKEGDVIRVKVLDVDQRGRIKLSM 691
>gi|429334718|ref|ZP_19215371.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
CSV86]
gi|428760610|gb|EKX82871.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
CSV86]
Length = 701
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/691 (51%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL++S +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAVSGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ + I A+ E + +W P V +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKEFAAEAAKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ + + +AY I K R + +D + E ++ I
Sbjct: 241 TELLNAVRAEFGEAVSQAYTITVKADRYARLGEL-RDQAVARFSGEEGQPGAGEVKDIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKDAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDVLKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|77457010|ref|YP_346515.1| polynucleotide phosphorylase [Pseudomonas fluorescens Pf0-1]
gi|123606003|sp|Q3KI80.1|PNP_PSEPF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77381013|gb|ABA72526.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas fluorescens
Pf0-1]
Length = 701
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ I + I +AY I K R + + + L E D+
Sbjct: 241 TELLAAIRSEFGEAISQAYTITIKADRYARLGELRDQVVAKLSGEEGQP-SAADVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398961656|ref|ZP_10678870.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM30]
gi|398152239|gb|EJM40764.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM30]
Length = 701
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 477/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E D+
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SAADVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKDAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|17988244|ref|NP_540878.1| polynucleotide phosphorylase [Brucella melitensis bv. 1 str. 16M]
gi|225853594|ref|YP_002733827.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
ATCC 23457]
gi|256264963|ref|ZP_05467495.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
2 str. 63/9]
gi|260563068|ref|ZP_05833554.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|265992189|ref|ZP_06104746.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. Rev.1]
gi|265993928|ref|ZP_06106485.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
3 str. Ether]
gi|384212520|ref|YP_005601604.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
M5-90]
gi|384409620|ref|YP_005598241.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
M28]
gi|384446152|ref|YP_005604871.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis NI]
gi|81851039|sp|Q8YEB7.1|PNP_BRUME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782709|sp|C0RG51.1|PNP_BRUMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|17984011|gb|AAL53142.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|225641959|gb|ACO01873.1| Polyribonucleotide nucleotidyltransferase [Brucella melitensis ATCC
23457]
gi|260153084|gb|EEW88176.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|262764909|gb|EEZ10830.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
3 str. Ether]
gi|263003255|gb|EEZ15548.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. Rev.1]
gi|263095446|gb|EEZ19047.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
2 str. 63/9]
gi|326410167|gb|ADZ67232.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
M28]
gi|326539885|gb|ADZ88100.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
M5-90]
gi|349744141|gb|AEQ09684.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis NI]
Length = 714
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/693 (50%), Positives = 488/693 (70%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G +++E G+IARQA +VL + +T +LATVVS K+P +FFPLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF +GY N+ Q+V+ VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI S++ S AL+IS +PF+GP+ A+VGYIDG+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT +A++ VESE+++LPED++L A++FGH+ + I+AI +L + ++ ++ P +D
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQP--EDL 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCI 360
L +K++ + E+ +R+AY+I KQ R E + I
Sbjct: 239 SELEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAEEHFFPEGVEETEMSAEQFATI 298
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L++KI+R ILD G RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATL
Sbjct: 299 FKHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATL 358
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ IDAL G + +SFMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 GTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 418
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGLIK+GE+
Sbjct: 419 AAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA 478
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT GIT+LQMDIKI GIT +I+++AL +AK G +IL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G +
Sbjct: 539 MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 598
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS N + AK+ I + ++G++Y G V++ DFGA + +DGL+HISQ+++
Sbjct: 599 IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 658
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV TD +KE QKV VK++G D+RG+++LSM
Sbjct: 659 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase [Brucella abortus bv. 1 str. 9-941]
gi|82700915|ref|YP_415489.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
biovar Abortus 2308]
gi|161620077|ref|YP_001593964.1| polynucleotide phosphorylase/polyadenylase [Brucella canis ATCC
23365]
gi|163844182|ref|YP_001628587.1| polynucleotide phosphorylase/polyadenylase [Brucella suis ATCC
23445]
gi|189025218|ref|YP_001935986.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus S19]
gi|237816509|ref|ZP_04595502.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
2308 A]
gi|256370564|ref|YP_003108075.1| polynucleotide phosphorylase/polyadenylase [Brucella microti CCM
4915]
gi|260546269|ref|ZP_05822009.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260567364|ref|ZP_05837834.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260755840|ref|ZP_05868188.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
str. 870]
gi|260759063|ref|ZP_05871411.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
str. 292]
gi|260884865|ref|ZP_05896479.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
str. C68]
gi|261215115|ref|ZP_05929396.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
str. Tulya]
gi|261221215|ref|ZP_05935496.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
gi|261314798|ref|ZP_05953995.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M163/99/10]
gi|261316643|ref|ZP_05955840.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
B2/94]
gi|261755873|ref|ZP_05999582.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
686]
gi|261759100|ref|ZP_06002809.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|265983164|ref|ZP_06095899.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
gi|265987715|ref|ZP_06100272.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M292/94/1]
gi|265997176|ref|ZP_06109733.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
gi|294851394|ref|ZP_06792067.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
07-0026]
gi|297247393|ref|ZP_06931111.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
str. B3196]
gi|306839947|ref|ZP_07472741.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
gi|306842722|ref|ZP_07475365.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
gi|340791750|ref|YP_004757215.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
B2/94]
gi|376272110|ref|YP_005150688.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus
A13334]
gi|376275245|ref|YP_005115684.1| polynucleotide phosphorylase/polyadenylase [Brucella canis HSK
A52141]
gi|423167871|ref|ZP_17154574.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI435a]
gi|423169753|ref|ZP_17156428.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI474]
gi|423175257|ref|ZP_17161926.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI486]
gi|423177893|ref|ZP_17164538.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI488]
gi|423179186|ref|ZP_17165827.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI010]
gi|423182317|ref|ZP_17168954.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI016]
gi|423186741|ref|ZP_17173355.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI021]
gi|423190823|ref|ZP_17177431.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI259]
gi|75496015|sp|Q57A96.1|PNP_BRUAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123727384|sp|Q2YQR3.1|PNP_BRUA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037301|sp|A9M9Z8.1|PNP_BRUC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037302|sp|B0CK15.1|PNP_BRUSI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702625|sp|B2S9G0.1|PNP_BRUA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|62197138|gb|AAX75438.1| Pnp, polyribonucleotide nucleotidyltransferase [Brucella abortus
bv. 1 str. 9-941]
gi|82617016|emb|CAJ12125.1| Ribosomal protein S1:3' exoribonuclease:RNA binding S1:KH domain:KH
domain, type 1 [Brucella melitensis biovar Abortus 2308]
gi|161336888|gb|ABX63193.1| Polyribonucleotide nucleotidyltransferase [Brucella canis ATCC
23365]
gi|163674905|gb|ABY39016.1| Polyribonucleotide nucleotidyltransferase [Brucella suis ATCC
23445]
gi|189020790|gb|ACD73512.1| Ribosomal protein S1 [Brucella abortus S19]
gi|237788576|gb|EEP62791.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
2308 A]
gi|256000727|gb|ACU49126.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
4915]
gi|260096376|gb|EEW80252.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260156882|gb|EEW91962.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260669381|gb|EEX56321.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
str. 292]
gi|260675948|gb|EEX62769.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
str. 870]
gi|260874393|gb|EEX81462.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
str. C68]
gi|260916722|gb|EEX83583.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
str. Tulya]
gi|260919799|gb|EEX86452.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
gi|261295866|gb|EEX99362.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
B2/94]
gi|261303824|gb|EEY07321.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M163/99/10]
gi|261739084|gb|EEY27080.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|261745626|gb|EEY33552.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
686]
gi|262551644|gb|EEZ07634.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
gi|264659912|gb|EEZ30173.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M292/94/1]
gi|264661756|gb|EEZ32017.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
gi|294819983|gb|EFG36982.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
07-0026]
gi|297174562|gb|EFH33909.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
str. B3196]
gi|306287168|gb|EFM58670.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
gi|306404911|gb|EFM61196.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
gi|340560209|gb|AEK55447.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
B2/94]
gi|363399716|gb|AEW16686.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus
A13334]
gi|363403812|gb|AEW14107.1| polynucleotide phosphorylase/polyadenylase [Brucella canis HSK
A52141]
gi|374535701|gb|EHR07222.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI486]
gi|374539620|gb|EHR11123.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI435a]
gi|374543432|gb|EHR14915.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI474]
gi|374549095|gb|EHR20541.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI488]
gi|374552130|gb|EHR23559.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI016]
gi|374552502|gb|EHR23930.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI010]
gi|374554593|gb|EHR26004.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI259]
gi|374557453|gb|EHR28849.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI021]
Length = 714
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/693 (50%), Positives = 488/693 (70%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G +++E G+IARQA +VL + +T +LATVVS K+P +FFPLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF +GY N+ Q+V+ VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI S++ S AL+IS +PF+GP+ A+VGYIDG+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT +A++ VESE+++LPED++L A++FGH+ + I+AI +L + ++ ++ P +D
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQP--EDL 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCI 360
L +K++ + E+ +R+AY+I KQ R E + I
Sbjct: 239 SELEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATI 298
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L++KI+R ILD G RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATL
Sbjct: 299 FKHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATL 358
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ IDAL G + +SFMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 GTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 418
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGLIK+GE+
Sbjct: 419 AAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA 478
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT GIT+LQMDIKI GIT +I+++AL +AK G +IL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G +
Sbjct: 539 MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 598
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS N + AK+ I + ++G++Y G V++ DFGA + +DGL+HISQ+++
Sbjct: 599 IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 658
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV TD +KE QKV VK++G D+RG+++LSM
Sbjct: 659 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|398951728|ref|ZP_10674263.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM33]
gi|398156016|gb|EJM44442.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM33]
Length = 701
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 478/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E +D+
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SASDVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|385332804|ref|YP_005886755.1| polynucleotide phosphorylase/polyadenylase [Marinobacter adhaerens
HP15]
gi|311695954|gb|ADP98827.1| polynucleotide phosphorylase/polyadenylase [Marinobacter adhaerens
HP15]
Length = 727
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/685 (51%), Positives = 481/685 (70%), Gaps = 1/685 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
KSF+ G +++E G IARQAT SVLV+++D +L TVV K+ FFPLTV+Y EK
Sbjct: 29 KSFELGGKTVTLETGRIARQATGSVLVTVDDISVLGTVVGAKEAKPGQPFFPLTVNYFEK 88
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YA G+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP G++NE+Q++ V+S + DP
Sbjct: 89 TYAVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGFMNEVQVITTVMSSSKNQDP 148
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVAGTEKA 248
DIA+++ S ALSIS +PF GP+G ++VGY + + Y LNPT E+L+ S LD++VAGTE A
Sbjct: 149 DIAAMLAASAALSISGIPFDGPIGASRVGYTNERGYFLNPTFEELQTSLLDMVVAGTEDA 208
Query: 249 IITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK 308
++ VESE+K L ED +L +++GH++M+ A+ AI E +G+ + +W P ++ L++
Sbjct: 209 VLMVESEAKGLTEDQMLGGVLYGHQEMQTAVTAIKEFAAEIGKPRWDWQPAAENTELLNA 268
Query: 309 IINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKI 368
I I +AY I++K R + L E +++ +E +
Sbjct: 269 IKADFAGAIEEAYGIRDKMARYERLGEVKAAAVEKLAGEEEGQPSEDEVKKYFGKIEKSV 328
Query: 369 IRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQK 428
+R+Q++D RID R +RPI I G+LP HGS+LFTRG+TQA+V TLGTSRD Q
Sbjct: 329 VRQQVIDGKPRIDGRDNKTVRPIEIEVGVLPSVHGSALFTRGETQAIVTTTLGTSRDVQI 388
Query: 429 IDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYS 488
IDAL GE D F+ HYN PP++ G+ GR+G P RRE+GHGRLAKR +L V+P +F Y+
Sbjct: 389 IDALEGERKDPFLFHYNFPPYSVGEAGRVGTPGRREVGHGRLAKRGVLAVMPTLEEFPYA 448
Query: 489 IRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGD 548
IR VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+K +L+DILGD
Sbjct: 449 IRAVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDKFAVLTDILGD 508
Query: 549 EDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKC 608
ED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A +IL +M + +
Sbjct: 509 EDHLGDMDFKVAGTQEGVTALQMDIKINGITDEIMEIALEQAHAARLHILGEMNKVISEP 568
Query: 609 KNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVS 668
+ ELS AP + TIKI+P KIRDVIGKGGS IR + +ETG ID++D+G + I + N +
Sbjct: 569 RAELSARAPSITTIKINPEKIRDVIGKGGSVIRAICDETGASIDLDDDGNVKIYADNQEA 628
Query: 669 GQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITD 728
Q A R++++T +++G +Y G V R+ DFGA + IL GKDGL+HISQIS +R+ +TD
Sbjct: 629 AQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNILPGKDGLVHISQISDRRIENVTD 688
Query: 729 FLKENQKVRVKVLGIDDRGRIKLSM 753
L E Q+V VKVL +D+RGR+KLSM
Sbjct: 689 ELSEGQEVLVKVLDVDNRGRVKLSM 713
>gi|158421687|ref|YP_001522979.1| polynucleotide phosphorylase/polyadenylase [Azorhizobium
caulinodans ORS 571]
gi|158328576|dbj|BAF86061.1| polyribonucleotide nucleotidyltransferase [Azorhizobium caulinodans
ORS 571]
Length = 756
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/697 (50%), Positives = 489/697 (70%), Gaps = 4/697 (0%)
Query: 60 KGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNF 119
K F+F+ + +G + +E G++ARQA +V S DT +LATVVS ++P +F
Sbjct: 29 KETFMFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDF 88
Query: 120 FPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVY 179
FPLTV+Y EK YAAGRIPG +FKREG+PSE+ET++SRLIDRPIRPLF +GY N+ Q+VV
Sbjct: 89 FPLTVNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVT 148
Query: 180 VLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLD 239
VL+ + + DPD+ S++ S AL++S +PF+GP+G A+VG++ +Y+LNPT E+LK S LD
Sbjct: 149 VLAHDLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALD 208
Query: 240 LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPI 299
L+VAGT A++ VESE+K+L E+++L A++FGH + I AI L + ++ ++P
Sbjct: 209 LVVAGTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEP- 267
Query: 300 VKDKTLISKIINISEHKIRKAYQIKNKQIRDLTF---KNISKDIYSSLIDNENLTIDIND 356
V L +KI I+E +R AY+IK KQ R K+ K + L + D
Sbjct: 268 VDHSALEAKIREIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYFEQLAIDGQEAPKAQD 327
Query: 357 INCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALV 416
+ +L LE+KI+R ILD G+RID R V +RPI GILPR HGS+LFTRG+TQALV
Sbjct: 328 VAEVLKGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALV 387
Query: 417 VATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALL 476
VATLGT DEQ ID+L G + + F+LHYN PPF+ G+ GR+G P RREIGHG+LA RA+
Sbjct: 388 VATLGTGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIH 447
Query: 477 PVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDG 536
P+LP ++F Y++R+VSEI ESNGSSSMA+VCG L+L+DAGVP+ VAGIAMGLI +G
Sbjct: 448 PMLPAKHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEG 507
Query: 537 EKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSY 596
EK +LSDILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+++AL +AK G ++
Sbjct: 508 EKFAVLSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAH 567
Query: 597 ILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE 656
IL +M + + EL + APR+ +KI KIR+VIG GG IR + E+TG +I+I D+
Sbjct: 568 ILGEMSKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDD 627
Query: 657 GIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHIS 716
G I IAS + S + A I+ + ++G +Y G V+++ DFGA + KDGL+HIS
Sbjct: 628 GTIKIASASGDSIKAAINWIKSIASEPEVGAIYDGTVVKVVDFGAFVNFFGSKDGLVHIS 687
Query: 717 QISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
Q+S +RV +D +KE KV+VK++G D+RG+ +LSM
Sbjct: 688 QLSKERVAKSSDVVKEGDKVKVKLVGFDERGKTRLSM 724
>gi|358448904|ref|ZP_09159397.1| polynucleotide phosphorylase/polyadenylase [Marinobacter
manganoxydans MnI7-9]
gi|357226907|gb|EHJ05379.1| polynucleotide phosphorylase/polyadenylase [Marinobacter
manganoxydans MnI7-9]
Length = 706
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/685 (51%), Positives = 481/685 (70%), Gaps = 1/685 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
KSF+ G +++E G IARQAT SVLV+++D +L TVV K+ FFPLTV+Y EK
Sbjct: 8 KSFELGGKTVTLETGRIARQATGSVLVTVDDISVLGTVVGAKEAKPGQPFFPLTVNYFEK 67
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
YA G+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP G++NE+Q++ V+S + DP
Sbjct: 68 TYAVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGFMNEVQVITTVMSSSKNQDP 127
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVAGTEKA 248
DIA+++ S ALSIS +PF GP+G ++VGY + + Y LNPT E+L+ S LD++VAGTE A
Sbjct: 128 DIAAMLAASAALSISGIPFDGPIGASRVGYTNERGYFLNPTFEELQTSLLDMVVAGTEDA 187
Query: 249 IITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK 308
++ VESE+K L ED +L +++GH++M+ A+ AI E +G+ + +W P ++ L++
Sbjct: 188 VLMVESEAKGLTEDQMLGGVLYGHQEMQTAVTAIKEFAAEIGKPRWDWQPAAENTELLNA 247
Query: 309 IINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKI 368
I I +AY I++K R + L E +++ +E +
Sbjct: 248 IKADFAGAIEEAYGIRDKMARYERLGEVKAAAVEKLAGEEEGQPSEDEVKKYFGKIEKSV 307
Query: 369 IRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQK 428
+R+Q++D RID R +RPI I G+LP HGS+LFTRG+TQA+V TLGTSRD Q
Sbjct: 308 VRQQVIDGKPRIDGRDNKTVRPIEIEVGVLPSVHGSALFTRGETQAIVTTTLGTSRDVQI 367
Query: 429 IDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYS 488
IDAL GE D F+ HYN PP++ G+ GR+G P RRE+GHGRLAKR +L V+P +F Y+
Sbjct: 368 IDALEGERKDPFLFHYNFPPYSVGEAGRVGTPGRREVGHGRLAKRGVLAVMPTLEEFPYA 427
Query: 489 IRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGD 548
IR VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+K +L+DILGD
Sbjct: 428 IRAVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDKFAVLTDILGD 487
Query: 549 EDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKC 608
ED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A +IL +M + +
Sbjct: 488 EDHLGDMDFKVAGTQEGVTALQMDIKINGITDEIMEIALEQAHAARLHILGEMNKVISEP 547
Query: 609 KNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVS 668
+ ELS AP + TIKI+P KIRDVIGKGGS IR + +ETG ID++D+G + I + N +
Sbjct: 548 RAELSARAPSITTIKINPEKIRDVIGKGGSVIRAICDETGASIDLDDDGNVKIYADNQEA 607
Query: 669 GQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITD 728
Q A R++++T +++G +Y G V R+ DFGA + IL GKDGL+HISQIS +R+ +TD
Sbjct: 608 AQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNILPGKDGLVHISQISDRRIENVTD 667
Query: 729 FLKENQKVRVKVLGIDDRGRIKLSM 753
L E Q+V VKVL +D+RGR+KLSM
Sbjct: 668 ELSEGQEVLVKVLDVDNRGRVKLSM 692
>gi|424921359|ref|ZP_18344720.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
R124]
gi|404302519|gb|EJZ56481.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fluorescens
R124]
Length = 701
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 477/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTADAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E D+
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SAADVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKDAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|261751308|ref|ZP_05995017.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
513]
gi|261741061|gb|EEY28987.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
513]
Length = 714
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/693 (50%), Positives = 488/693 (70%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G +++E G+IARQA +VL + +T +LATVVS K+P +FFPLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF +GY N+ Q+V+ VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI S++ S AL+IS +PF+GP+ A+VGYIDG+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT +A++ VESE+++LPED++L A++FGH+ + I+AI +L + ++ ++ P +D
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKELRDFQP--EDL 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCI 360
L +K++ + E+ +R+AY+I KQ R E + I
Sbjct: 239 SELEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATI 298
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L++KI+R ILD G RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATL
Sbjct: 299 FKHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATL 358
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ IDAL G + +SFMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 GTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 418
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGLIK+GE+
Sbjct: 419 AAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA 478
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT GIT+LQMDIKI GIT +I+++AL +AK G +IL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G +
Sbjct: 539 MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 598
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS N + AK+ I + ++G++Y G V++ DFGA + +DGL+HISQ+++
Sbjct: 599 IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 658
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV TD +KE QKV VK++G D+RG+++LSM
Sbjct: 659 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|398848259|ref|ZP_10605084.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM84]
gi|398249075|gb|EJN34468.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM84]
Length = 701
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/691 (51%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL+ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLQASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE A++ VESE+++L ED +L A++F H++ + I A+ EL G+ +W P V +
Sbjct: 181 AGTESAVLMVESEAQELTEDQMLGAVLFAHDEFQSVIQAVKELAAEAGKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + I + + Y I K R + +D + E +++ I
Sbjct: 241 TELFNAIRAEFGEGVSQGYTITVKADRYARLGEL-RDQAIAKFSGEEGQPSASEVKEIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGESRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRGICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDVLKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|254482485|ref|ZP_05095724.1| 3' exoribonuclease family, domain 2, protein [marine gamma
proteobacterium HTCC2148]
gi|214037176|gb|EEB77844.1| 3' exoribonuclease family, domain 2, protein [marine gamma
proteobacterium HTCC2148]
Length = 703
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/690 (50%), Positives = 484/690 (70%), Gaps = 3/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+F+YG +++E G IARQAT SVLV++E+T +L TVV+ K +FFPL V
Sbjct: 1 MNPVTKTFQYGDQTVTLETGRIARQATGSVLVTVENTSVLCTVVAEKTQRPGRDFFPLAV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y+EK Y+ G+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFP G++NE+Q+V V+S +
Sbjct: 61 HYVEKTYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSAD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVA 243
IDPDI ++IG S AL+IS PF GP+G A+VG+ D K YILNPT EQL++S LD++VA
Sbjct: 121 KHIDPDIPAMIGTSAALAISGAPFNGPIGGARVGFSDEKGYILNPTYEQLEESKLDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+K+L ED +L A++F H++M+ + AINELV G+ K +W ++
Sbjct: 181 GTADAVLMVESEAKELSEDQMLGAVLFAHQEMQTVVQAINELVAESGKPKWDWQADEINE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++ + ++ + +AY+I K R + +L + D +I I
Sbjct: 241 ELLAAVEGQVKNDLGEAYRITEKSARYERVGEVRSACLEALAVEGGPSAD--EIKDIFKS 298
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++RK+IL RID R +R I+ +L + HGS+LFTRG+TQA+ TLG++
Sbjct: 299 VEKSLVRKRILAGEPRIDGRDTRTVRAIACEVDVLAKAHGSALFTRGETQAIGAVTLGST 358
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL GE D FMLHYN PP++ G+ GR+G RRE+GHGRLA+R L VLPN
Sbjct: 359 RDAQIIDALHGERRDPFMLHYNFPPYSVGEAGRVGFTSRREVGHGRLARRGLAAVLPNQE 418
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVC G L L+ AGVP+ VAGIAMGL+KDG + +L+
Sbjct: 419 EFPYTIRVVSEITESNGSSSMASVCAGSLGLMAAGVPLKAPVAGIAMGLVKDGNQFAVLT 478
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT I++ AL +A+ +IL +M
Sbjct: 479 DILGDEDHLGDMDFKVAGTAEGITALQMDIKIEGITAQIMETALDQAQHARLHILGQMNE 538
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + S+ AP ++T+K+D KIRD+IGKGG+TIR++TE++G +DI+D+G + I
Sbjct: 539 VLAEGRTVTSENAPSMMTLKVDSDKIRDIIGKGGATIRSITEQSGATVDIDDDGTVRIFG 598
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ ++ +A +E++T +G VYTG V R+ DFGA + IL GKDGL+HISQI+++RV
Sbjct: 599 QDQMARDKAVAMVEEITAEADVGAVYTGTVARIVDFGAFVNILPGKDGLVHISQIANERV 658
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L E Q+V+VKVL +D RGRIKLS+
Sbjct: 659 ENVTDYLSEGQEVKVKVLDVDQRGRIKLSI 688
>gi|23503016|ref|NP_699143.1| polynucleotide phosphorylase [Brucella suis 1330]
gi|376281812|ref|YP_005155818.1| polynucleotide phosphorylase/polyadenylase [Brucella suis VBI22]
gi|384225804|ref|YP_005616968.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
gi|81751805|sp|Q8FXS9.1|PNP_BRUSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|23349057|gb|AAN31058.1| polyribonucleotide nucleotidyltransferase [Brucella suis 1330]
gi|343383984|gb|AEM19476.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
gi|358259411|gb|AEU07146.1| polynucleotide phosphorylase/polyadenylase [Brucella suis VBI22]
Length = 714
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/693 (50%), Positives = 488/693 (70%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G +++E G+IARQA +VL + +T +LATVVS K+P +FFPLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF +GY N+ Q+V+ VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI S++ S AL+IS +PF+GP+ A+VGYIDG+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT +A++ VESE+++LPED++L A++FGH+ + I+AI +L + ++ ++ P +D
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQP--EDL 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCI 360
L +K++ + E+ +R+AY+I KQ R E + I
Sbjct: 239 SELEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATI 298
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L++KI+R ILD G RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATL
Sbjct: 299 FKHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATL 358
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ IDAL G + +SFMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 GTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 418
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGLIK+GE+
Sbjct: 419 AAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA 478
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT GIT+LQMDIKI GIT +I+++AL +AK G +IL +
Sbjct: 479 VLSDILGDEDYLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G +
Sbjct: 539 MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 598
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS N + AK+ I + ++G++Y G V++ DFGA + +DGL+HISQ+++
Sbjct: 599 IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 658
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV TD +KE QKV VK++G D+RG+++LSM
Sbjct: 659 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|149375751|ref|ZP_01893519.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Marinobacter algicola DG893]
gi|149359876|gb|EDM48332.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Marinobacter algicola DG893]
Length = 714
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/690 (52%), Positives = 485/690 (70%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + KSF+ G ++IE G IARQAT SVLV+++D +L TVV+ K+ FFPLTV
Sbjct: 10 LNPVKKSFELGGKTVTIETGRIARQATGSVLVTVDDISVLGTVVAAKEAKPGQPFFPLTV 69
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
+Y EK YA G+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP+G++NE Q++ V+S +
Sbjct: 70 NYFEKTYAVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGFMNETQVITTVMSSS 129
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVA 243
DPDIA+++ S ALSIS +PF GP+G ++V Y + + Y LNPT E+L+ S LD++VA
Sbjct: 130 KNQDPDIAAMLAASAALSISGIPFDGPIGASRVAYTNERGYFLNPTFEELETSLLDMVVA 189
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K L ED +L A++FGH++M+ A+ AI E VG+ + W P ++
Sbjct: 190 GTEDAVLMVESEAKGLTEDQMLGAVLFGHQEMQTAVTAIKEFAAEVGKPRWEWQPEAENT 249
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++ + I +AY I++K R I L E +++
Sbjct: 250 ELLNAVKADFSADIEQAYGIRDKMERYARLSEIKSAAVEKLAGEEEGQPAEDEVKKYFAK 309
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E I+R+Q++D RID R +RPI + G+LP THGS+LFTRG+TQA+V TLGT+
Sbjct: 310 VEKTIVRQQVIDGKPRIDGRDNKTVRPIEVEVGVLPSTHGSALFTRGETQAIVTTTLGTA 369
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL GE D F+ HYN PP++ G+ GR+G P RRE+GHGRLAKR + V+P
Sbjct: 370 RDMQIIDALEGERKDPFLFHYNFPPYSVGEAGRVGTPGRREVGHGRLAKRGVAAVMPTME 429
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G++ +L+
Sbjct: 430 EFPYTIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDQFAVLT 489
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I++IAL +A +IL +M
Sbjct: 490 DILGDEDHLGDMDFKVAGTSDGITALQMDIKIQGITDEIMEIALDQANAARLHILGEMAK 549
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ELS AP + TIKI+P KIRDVIGKGGSTIR++ +ETG ID++D+G + I +
Sbjct: 550 VISAPRKELSSRAPSITTIKINPEKIRDVIGKGGSTIRSICDETGASIDLDDDGNVKIYA 609
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N + A +R+ ++T +++G +Y+G V R+ DFGA + IL GKDGL+HISQIS +R+
Sbjct: 610 DNQDAANAAMKRVMEITAEIEVGAIYSGRVERIVDFGAFVNILPGKDGLVHISQISERRI 669
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD L E Q+V VKVL +D+RGR+KLSM
Sbjct: 670 ENVTDELSEGQEVLVKVLDVDNRGRVKLSM 699
>gi|398929642|ref|ZP_10664077.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM48]
gi|398166711|gb|EJM54803.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM48]
Length = 701
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 478/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E +D+
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SASDVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398855349|ref|ZP_10611845.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM80]
gi|398232034|gb|EJN18013.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM80]
Length = 701
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + NW P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWNWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E +++
Sbjct: 241 TELLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSS-SEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|146283626|ref|YP_001173779.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
A1501]
gi|187611273|sp|A4VPN6.1|PNP_PSEU5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145571831|gb|ABP80937.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri
A1501]
Length = 701
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/691 (51%), Positives = 485/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKTADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL++S +PF GP+G A+V + + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+K+L ED +L A++F H++ + I A+ EL G+ + +W +
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I KQ R + + + + E ++
Sbjct: 241 TALLDAIRSEFGAAISEAYTITIKQQRYARLDELREQVVAKFSGEEGQPSG-GEVKDAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D+FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LP+
Sbjct: 360 ARDAQLLDTLEGEKKDAFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMS 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS +R
Sbjct: 600 GETKEAAEAAKQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 660 IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 690
>gi|381167889|ref|ZP_09877094.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Phaeospirillum molischianum DSM
120]
gi|380682965|emb|CCG41906.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Phaeospirillum molischianum DSM
120]
Length = 719
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/692 (51%), Positives = 484/692 (69%), Gaps = 6/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
LFN K +G K+ +E G++ARQA +VL + +T +L TVV K +FFPLT
Sbjct: 3 LFNVHRKELIWGGRKLILETGKVARQADGAVLATYGETTVLCTVVGVKTQKPGIDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EKA+AAG+IPG FFKREG+PSE+ET++SRLIDRPIRPLF +G+ NE+Q+V VLS
Sbjct: 63 VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVDGFRNEVQVVCTVLSH 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI S++G S AL++S LPF+GP+G A+VGYIDG+Y+LNP ++L KS LDL+VA
Sbjct: 123 DLENDPDIVSLVGTSAALTLSGLPFMGPVGAARVGYIDGQYVLNPKADELPKSALDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT + ++ VESE++QL E+I+L A+ FGH + + I AI EL + ++ P +
Sbjct: 183 GTSEGVLMVESEAQQLSEEIMLGAVTFGHTEFQPVIKAIIELAELAAKEPWELAPPPAEI 242
Query: 304 TLISKIINIS--EHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCIL 361
L+ + + +AY+I KQ R + K +L + L + IL
Sbjct: 243 ALVRSKFEAAGIPAALAEAYKIVKKQDRYAAVGAVKKSALEALTEAAELAV----APGIL 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
DLES+++R IL+ G+RID R +RPI + G+LPR HGS+LFTRG+TQALVVATLG
Sbjct: 299 KDLESEVVRGNILNTGIRIDGRDTKTVRPIEVEVGVLPRAHGSALFTRGETQALVVATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T +DEQ IDAL GE+ + FMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P LP
Sbjct: 359 TGQDEQIIDALSGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPTLPT 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
F Y+IR+VSEITESNGSSSMA+VCG LAL+D+GVP+ VAGIAMGLIK+GE +
Sbjct: 419 KESFPYTIRVVSEITESNGSSSMATVCGSSLALMDSGVPLPRPVAGIAMGLIKEGESFAV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT +G+TALQMDIKI IT +I++IAL +AK G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTEDGVTALQMDIKITSITQEIMKIALDQAKDGRIHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ ++ +S APR+ TI I KIR+VIG GG IR + E+TG +IDI+D+G I +
Sbjct: 539 NKGLDSARDSVSGNAPRITTISIPKEKIREVIGTGGKVIREICEQTGAKIDIDDDGTIKV 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS ++ + Q A I + ++G +YTG V+++ DFGA + L +DGL+HIS++S +
Sbjct: 599 ASVDADAAQRAIDWIRGIVAEPELGVIYTGKVVKVVDFGAFVNFLGSRDGLVHISELSRE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV+ + D +K+ V+VKVLG DDRG++KLSM
Sbjct: 659 RVSKVADVIKQGDVVKVKVLGFDDRGKVKLSM 690
>gi|148559480|ref|YP_001259963.1| polynucleotide phosphorylase/polyadenylase [Brucella ovis ATCC
25840]
gi|187470942|sp|A5VTB6.1|PNP_BRUO2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148370737|gb|ABQ60716.1| polyribonucleotide nucleotidyltransferase [Brucella ovis ATCC
25840]
Length = 714
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/693 (51%), Positives = 488/693 (70%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G ++IE G+IARQA +VL + +T +LATVVS K+P +FFPLT
Sbjct: 1 MFNTHKVEIEWGGRPLTIETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF +GY N+ Q+V+ VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI S++ S AL+IS +PF+GP+ A+VGYIDG+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT +A++ VESE+++LPED++L A++FGH+ + I+AI +L + ++ ++ P +D
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQP--EDL 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCI 360
L +K++ + E+ +R+AY+I KQ R E + I
Sbjct: 239 SELEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQFATI 298
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L++KI+R ILD G RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATL
Sbjct: 299 FTHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATL 358
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ IDAL G + +SFMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 GTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 418
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGLIK+GE+
Sbjct: 419 AAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA 478
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT GIT+LQMDIKI GIT +I+++AL +AK G +IL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G +
Sbjct: 539 MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 598
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS N + AK+ I + ++G++Y G V++ DFGA + +DGL+HISQ+++
Sbjct: 599 IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 658
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV TD +KE QKV VK++G D+RG+++LSM
Sbjct: 659 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|261324106|ref|ZP_05963303.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
gi|261300086|gb|EEY03583.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
Length = 714
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/693 (50%), Positives = 488/693 (70%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G +++E G+IARQA +VL + +T +LATVVS K+P +FFPLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF +GY N+ Q+V+ VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI S++ S AL+IS +PF+GP+ A+VGYIDG+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT +A++ VESE+++LPED++L A++FGH+ + I+AI +L + ++ ++ P +D
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQP--EDL 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCI 360
L +K++ + E+ +R+AY+I KQ R E + I
Sbjct: 239 SELEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQFATI 298
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L++KI+R ILD G RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATL
Sbjct: 299 FKHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATL 358
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ IDAL G + +SFMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 GTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIYPMLP 418
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGLIK+GE+
Sbjct: 419 AAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA 478
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT GIT+LQMDIKI GIT +I+++AL +AK G +IL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G +
Sbjct: 539 MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 598
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS N + AK+ I + ++G++Y G V++ DFGA + +DGL+HISQ+++
Sbjct: 599 IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 658
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV TD +KE QKV VK++G D+RG+++LSM
Sbjct: 659 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|306843586|ref|ZP_07476187.1| polynucleotide phosphorylase/polyadenylase [Brucella inopinata BO1]
gi|306276277|gb|EFM57977.1| polynucleotide phosphorylase/polyadenylase [Brucella inopinata BO1]
Length = 714
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/693 (50%), Positives = 488/693 (70%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G +++E G+IARQA +VL + +T +LATVVS K+P +FFPLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF +GY N+ Q+V+ VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI S++ S AL+IS +PF+GP+ A+VGYIDG+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT +A++ VESE+++LPED++L A++FGH+ + I+AI +L + ++ ++ P +D
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQP--EDL 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCI 360
L +K++ + E+ +R+AY+I KQ R E + I
Sbjct: 239 SELEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATI 298
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L++KI+R ILD G RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATL
Sbjct: 299 FKHLQAKIVRWNILDTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATL 358
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ IDAL G + ++FMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 GTGEDEQMIDALTGTYKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 418
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGLIK+GE+
Sbjct: 419 AAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA 478
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT GIT+LQMDIKI GIT +I+++AL +AK G +IL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G +
Sbjct: 539 MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 598
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS N + AK+ I + ++G++Y G V++ DFGA + +DGL+HISQ+++
Sbjct: 599 IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 658
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV TD +KE QKV VK++G D+RG+++LSM
Sbjct: 659 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|400288478|ref|ZP_10790510.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp. PAMC
21119]
Length = 709
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/698 (51%), Positives = 482/698 (69%), Gaps = 4/698 (0%)
Query: 59 MKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYN 118
M +FN + + F+YGS ++ IE G IARQA +S+LV + +L V D N
Sbjct: 1 MTNPTMFNTVKREFQYGSQQVVIETGRIARQA-NSILVHMGGVTVLVAAVVKSDAKEGQN 59
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTV+Y EK YAAG+IPG++ KREG+ SE ET+ SRLIDRPIRPLFPEGY+NEIQI
Sbjct: 60 FFPLTVNYQEKMYAAGKIPGAYGKREGRASEFETLTSRLIDRPIRPLFPEGYVNEIQITA 119
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
V+S + DIA++IG S AL+IS+ PF GP+ A+VG+I+G+Y+LNPT EQLK+S L
Sbjct: 120 TVVSSDKTQSADIAALIGASAALAISDAPFNGPVAAARVGFINGEYVLNPTIEQLKESDL 179
Query: 239 DLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
DL+VAGT+ A++ VESE+ +L ED +L A+++GH++ +I I+ I + + +G K +
Sbjct: 180 DLVVAGTKSAVLMVESEAAELSEDQMLGAVLYGHQQQQIVIDNIASMAEEIGTAKQQYSA 239
Query: 299 IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI---DNENLTIDIN 355
+D+ L S + ++ AY I +KQ R I + I +L ++E ++
Sbjct: 240 PERDQALTSSMKEQFGEQVADAYTITDKQARYTKLDEIKQSIIDTLAGDAESEAYADTVS 299
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
++ I DL+ + +R IL RID R +R + ++ G+LP THGS+LFTRG+TQAL
Sbjct: 300 ELKEIYNDLKYRTVRDNILSGKPRIDGRDPETVRALDVQVGVLPYTHGSALFTRGETQAL 359
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
V TLG SRD ID+L G D FMLHYN P F+ G+ GR G+PKRREIGHGRLA+R +
Sbjct: 360 VTTTLGNSRDVNMIDSLGGTIRDHFMLHYNFPHFSVGETGREGIPKRREIGHGRLARRGV 419
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
+LP++ +F Y IR+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+
Sbjct: 420 QAMLPDSERFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLVKE 479
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
GE+ +LSDILGDED GDMDFKVAG+ +GITALQMDIKI GIT DI++ AL +A G
Sbjct: 480 GERFAVLSDILGDEDHLGDMDFKVAGSKDGITALQMDIKIEGITPDIMEQALKQAHAGRI 539
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL+ M +P+ + E++ AP I+I+P KIRDVIGKGG+ IR LTEETG IDI+D
Sbjct: 540 HILDAMNKVLPESRTEINAHAPNYAVIEINPDKIRDVIGKGGAMIRQLTEETGAVIDIDD 599
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
G I I N + + A +IE LT V++GK Y G V R+ DFGA + +L DGL+HI
Sbjct: 600 GGTIRIFGENKAATKAAIGKIEALTAEVEVGKTYEGTVARIVDFGAFVNVLPNTDGLVHI 659
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQI+ +RV ++D+LKE Q V+V V +D+RGRIKL+M
Sbjct: 660 SQIAEERVENVSDYLKEGQTVKVLVQDVDNRGRIKLTM 697
>gi|148549775|ref|YP_001269877.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida F1]
gi|386013910|ref|YP_005932187.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida
BIRD-1]
gi|395445461|ref|YP_006385714.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida ND6]
gi|187611272|sp|A5W983.1|PNP_PSEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148513833|gb|ABQ80693.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida F1]
gi|313500616|gb|ADR61982.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida
BIRD-1]
gi|388559458|gb|AFK68599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida ND6]
Length = 701
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++ + I A+ EL G+ +W P V +
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + I + + Y I K R + +D + E +++ I
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGEL-RDQAVAKFSGEEGQPSASEVKDIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|407972913|ref|ZP_11153826.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor indicus
C115]
gi|407431684|gb|EKF44355.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor indicus
C115]
Length = 718
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/683 (50%), Positives = 496/683 (72%), Gaps = 3/683 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++G + +E G+IARQA +VL + +TV+LATVVS K+P ++FFPLTV+Y EK +A
Sbjct: 10 EWGGRPLVLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGFDFFPLTVNYQEKTFA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
AG+IPG +FKREG+PSE+ET++SRLIDRPIRPLF +GY N+ Q+++ VL + + DPDI
Sbjct: 70 AGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVDGYKNDTQVIITVLQHDLENDPDIV 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
S++ S AL++S +PF+GP+G A+VGYI G+YILNP ++++++ LDL+VAGT +A++ V
Sbjct: 130 SMVAASAALTLSGVPFMGPIGAARVGYIGGEYILNPHVDEMEETKLDLVVAGTGEAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINI 312
ESE++QLPED++L A++FGH+ + I+AI +L + ++ ++ L +++ +
Sbjct: 190 ESEAQQLPEDVMLGAVMFGHKNFQPVIDAIIKLAEVAAKEPRDFS-AADLSELEGEMLKV 248
Query: 313 SEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKIIR 370
E+ +R AY+I +KQ R + ++ + E +N + L++KI+R
Sbjct: 249 VENDLRDAYKITDKQQRYDAVDAAKAKVKATFLPEGEEETKWSTEQVNTVFKSLQAKIVR 308
Query: 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKID 430
ILD G RID R ++ +RPI G+LPRTHGS+LFTRG+TQALVVATLGT DEQ ID
Sbjct: 309 WNILDTGNRIDGRDLSTVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFID 368
Query: 431 ALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIR 490
+L G + +SF+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP +++F Y++R
Sbjct: 369 SLTGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPASDQFPYTLR 428
Query: 491 LVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDED 550
+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLIK+ E+ +LSDILGDED
Sbjct: 429 VVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEERFAVLSDILGDED 488
Query: 551 RCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKN 610
GDMDFKVAGT GIT+LQMDIKI GIT +I++IAL +AK G +IL +M + + +
Sbjct: 489 HLGDMDFKVAGTDEGITSLQMDIKIDGITEEIMKIALEQAKGGRLHILGEMSKALAESRG 548
Query: 611 ELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQ 670
EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G + IAS N+ +
Sbjct: 549 ELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIASSNAKEIE 608
Query: 671 EAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFL 730
A++ I +T ++G++Y G V++ DFGA + +DGL+HISQ++S+RV TD +
Sbjct: 609 AARKWIHSITAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLASERVAKTTDVV 668
Query: 731 KENQKVRVKVLGIDDRGRIKLSM 753
KE KV VK++G D+RG+++LSM
Sbjct: 669 KEGDKVFVKLMGFDERGKVRLSM 691
>gi|421523927|ref|ZP_15970554.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
LS46]
gi|402752172|gb|EJX12679.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
LS46]
Length = 701
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++ + I A+ EL G+ +W P V +
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + I + + Y I K R + +D + E +++ I
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGEL-RDQAVAKFSGEEGQPSASEVKEIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|325276169|ref|ZP_08141974.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
gi|324098706|gb|EGB96747.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. TJI-51]
Length = 701
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++ + I A+ EL G+ +W P V +
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + I + + Y I K R + +D + E ++ I
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGEL-RDQAVAKFSGEEGQPSAAEVKDIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I++KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIGQSRTELSANAPTMISMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|167035698|ref|YP_001670929.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
GB-1]
gi|189037313|sp|B0KHX3.1|PNP_PSEPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166862186|gb|ABZ00594.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida GB-1]
Length = 701
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++ + I A+ EL + +W P V +
Sbjct: 181 AGTADAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + I + + Y I K R + +D + E +++ I
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGEL-RDQAIAKFSGEEGQPSASEVKEIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398870576|ref|ZP_10625898.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM74]
gi|398983418|ref|ZP_10690027.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM24]
gi|399014431|ref|ZP_10716722.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM16]
gi|426407623|ref|YP_007027722.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. UW4]
gi|398110996|gb|EJM00888.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM16]
gi|398157319|gb|EJM45715.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM24]
gi|398207813|gb|EJM94556.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM74]
gi|426265840|gb|AFY17917.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. UW4]
Length = 701
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/691 (51%), Positives = 478/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E +++
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSS-SEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|170719911|ref|YP_001747599.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas putida
W619]
gi|226702679|sp|B1J2B3.1|PNP_PSEPW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|169757914|gb|ACA71230.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida W619]
Length = 701
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++ + I A+ EL G+ +W P V +
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + I + + Y I K R + +D + E +++ I
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGEL-RDQAIAKFSGEEGQPSASEVKEIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|397693403|ref|YP_006531283.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida
DOT-T1E]
gi|397330133|gb|AFO46492.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas putida
DOT-T1E]
Length = 701
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++ + I A+ EL G+ +W P V +
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + I + + Y I K R + +D + E +++ I
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGEL-RDQAVAKFSGEEGQPSASEVKDIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|70734341|ref|YP_257981.1| polynucleotide phosphorylase [Pseudomonas protegens Pf-5]
gi|123762225|sp|Q4KIF2.1|PNP_PSEF5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68348640|gb|AAY96246.1| polyribonucleotide nucleotidyltransferase [Pseudomonas protegens
Pf-5]
Length = 703
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/693 (51%), Positives = 480/693 (69%), Gaps = 5/693 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGTE+A++ VESE+K+L ED +L A++F H++ + I A+ EL + +WD
Sbjct: 181 AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQSVIKAVKELAAEAAKPTWDWDWAAAP 240
Query: 303 KT--LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCI 360
+ L+ I I +AY I K R + + + L E +D+
Sbjct: 241 EATELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SASDVKAA 299
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATL
Sbjct: 300 FGEIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATL 359
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 GTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLP 419
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK
Sbjct: 420 AADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFA 479
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +
Sbjct: 480 VLTDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQ 539
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I
Sbjct: 540 MNQIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIK 599
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I + + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S
Sbjct: 600 IFGETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSD 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 ARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 692
>gi|409422627|ref|ZP_11259718.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. HYS]
Length = 701
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/691 (51%), Positives = 480/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ + I A+ EL + +W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWKPAAAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ I + AY I K R + + + + E +++ I
Sbjct: 241 TELLNAIRGEFGAAVSDAYTITVKADRYARLGELREQVIAKFSGEEGQP-SASEVKEIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRSELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKDAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|8928246|sp|O87792.1|PNP_PSEPU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|3650364|emb|CAA77048.1| polyribonucleotide nucleotidyltransferase [Pseudomonas putida]
Length = 701
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++ + I A+ EL G+ +W P V +
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + I + + Y I K R + +D + E +++ I
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGEL-RDQAVAKFSGEEGQPSASEVKEIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|398864721|ref|ZP_10620252.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM78]
gi|398244672|gb|EJN30215.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM78]
Length = 701
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/691 (51%), Positives = 477/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E +++
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSS-SEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 ADFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|254671820|emb|CBA03945.1| polyribonucleotide nucleotidyltransferase, partial [Neisseria
meningitidis alpha275]
Length = 579
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/579 (58%), Positives = 443/579 (76%), Gaps = 1/579 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+K +K+F+YG++ +++E GEIARQA ++V VS+ DTV+L V + K+ +FFPLT
Sbjct: 1 MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
VDY+E+ YAAG+IPG FFKREGK SE+E + SRLIDRPIRPLFPEG+ ++IQIV V+SV
Sbjct: 61 VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+P+ID DI +++G S AL +S +PF GP+G A+VGY++G Y+LNPT +L KS LDL+VA
Sbjct: 121 DPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT KA++ VESE+K LPED++L A+++GH++M++AINAINE V + +W ++
Sbjct: 181 GTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNPEVWDWKAPETNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++K+ I+ I++A++I+ KQ R + +LI E T+ N+I I
Sbjct: 241 ELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSAVKEALITEETDTLAANEIKGIFKH 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE+ ++R QILD RID R +RP++I+TG+LPRTHGS+LFTRG+TQAL VATLGTS
Sbjct: 301 LEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTS 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RDEQ IDAL GE+TD FMLHYN PP++TG++GR+G PKRREIGHGRLAKRALL VLP
Sbjct: 361 RDEQIIDALSGEYTDRFMLHYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPE 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
F+Y++R+VSEITESNGSSSMASVCGGCL+LL AGVP+ HVAGIAMGLI +G K +L+
Sbjct: 421 DFSYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK+ +IL++MK
Sbjct: 481 DILGDEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKA 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRT 642
V ELS APRL T+KI+ KIR+VIGKGG TIR
Sbjct: 541 AV-AGPQELSAHAPRLFTMKINQDKIREVIGKGGETIRA 578
>gi|388547459|ref|ZP_10150723.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. M47T1]
gi|388274380|gb|EIK93978.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. M47T1]
Length = 701
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 477/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ + I A+ EL + W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQSVIKAVKELAAEAAKPTWAWAPQAEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I AY I K R + + + L E +++
Sbjct: 241 TELLGAIRAEFGAAISDAYTITVKADRYARLGELKDQVVAKLSGEEGQP-SASEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK IL
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAIL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS+ AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRSELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKDAAEAAKQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|26991392|ref|NP_746817.1| polynucleotide phosphorylase [Pseudomonas putida KT2440]
gi|81439660|sp|Q88DW0.1|PNP_PSEPK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|24986460|gb|AAN70281.1|AE016668_7 polyribonucleotide nucleotidyltransferase [Pseudomonas putida
KT2440]
Length = 701
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++ + I A+ EL G+ +W P V +
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L + I + + Y I K R + +D + E +++ I
Sbjct: 241 TELFNAIRAEFGEAVSQGYTITVKADRYARLGEL-RDQAVAKFSGEEGQPSASEVKEIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|395785548|ref|ZP_10465280.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th239]
gi|423717553|ref|ZP_17691743.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th307]
gi|395425095|gb|EJF91266.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th239]
gi|395426953|gb|EJF93069.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th307]
Length = 734
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/693 (50%), Positives = 495/693 (71%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN +G + +E G++ARQA +V+ + +TV+LATVVS K+P + +FFPLT
Sbjct: 1 MFNTHKVEIDWGGRPLILETGKVARQADGAVIATYGETVVLATVVSAKEPKAGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET+ISRLIDRPIRPLF +GY N+ Q++V V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVTVMQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI SI+ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDILSIVAASAALTLSGVPFMGPIGGARVGYINGQYVLNPNIDEMPESTLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT +A++ VESE+++LPEDI+L A++FG + + I+AI +L + ++ ++ P +D
Sbjct: 181 GTSEAVLMVESEAQELPEDIMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFSP--EDL 238
Query: 304 T-LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCI 360
+ L K++ ++E +RKAYQ+ +KQ R + + + E+ I +
Sbjct: 239 SDLEKKMLKLAEKDLRKAYQMTDKQERYSAVDAVKAKVIEKFLPEGVEDGDYSAEQIATV 298
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L++KI+R ILD G RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATL
Sbjct: 299 FKHLQAKIVRWNILDTGSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATL 358
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ ID+L G + ++F+LHYN PPF+ G+ GRIG P RREIGHG+LA RA+ P+LP
Sbjct: 359 GTGEDEQYIDSLTGMYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPMLP 418
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLIK+GE+
Sbjct: 419 AKESFPYTIRTVSEITESNGSSSMATVCGTSLALMDAGVPLQRPVAGIAMGLIKEGERFA 478
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT NGIT+LQMDIKI GIT +I++IAL +AK G +IL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALDQAKGGRIHILGE 538
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G +
Sbjct: 539 MAKALTGARAELGEFAPRIEMMNIPVEKIRDVIGSGGKVIREIVEQTGAKINIEDDGTVK 598
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS ++ + AKR I + + ++G++Y G V++ DFGA + +DGL+HISQ+S
Sbjct: 599 IASSDAKTIDAAKRWIHSIIDEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLSP 658
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV TD +++ QKV VK++G D+RG+++LSM
Sbjct: 659 ERVAKTTDVVQDGQKVWVKLMGFDERGKVRLSM 691
>gi|398909512|ref|ZP_10654578.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM49]
gi|398188000|gb|EJM75322.1| polyribonucleotide nucleotidyltransferase [Pseudomonas sp. GM49]
Length = 701
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/691 (51%), Positives = 477/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQ S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+K+L ED +L A++F H++ ++ INA+ EL + W P +
Sbjct: 181 AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I K R + + + L E ++
Sbjct: 241 TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSS-AEVKAAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|261217986|ref|ZP_05932267.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
gi|261321164|ref|ZP_05960361.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
gi|260923075|gb|EEX89643.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
gi|261293854|gb|EEX97350.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
Length = 714
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/693 (50%), Positives = 487/693 (70%), Gaps = 5/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G +++E G+IARQA +VL + +T +LATVVS K+P +FFPLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF +GY N+ Q+V+ VL
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI S++ S AL+IS +PF+GP+ A+VGYIDG+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT +A++ VESE+++LPED++L A++FGH+ + I+AI +L + ++ ++ P +D
Sbjct: 181 GTSEAVLMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQP--EDL 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCI 360
L +K++ + E+ +R+AY+I KQ R E + I
Sbjct: 239 SELEAKVLAVVENDLREAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMSAEQFATI 298
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L++KI+R ILD G RID R ++ +R I GILPRTHGS+LFTRG+TQA+VVATL
Sbjct: 299 FKHLQAKIVRWNILDTGNRIDGRDLSTVRSIVSEVGILPRTHGSALFTRGETQAIVVATL 358
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ IDAL G + +SFMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 GTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 418
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVPI VAGIAMGLIK+GE+
Sbjct: 419 AAEQFPYTIRAVSEITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA 478
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT GIT+LQMDIKI GIT +I+++AL +AK G +IL +
Sbjct: 479 VLSDILGDEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGE 538
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G +
Sbjct: 539 MAKAISSSRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVK 598
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS N + AK+ I + ++G++Y G V++ DFGA + +DGL+HISQ+++
Sbjct: 599 IASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAA 658
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV TD +KE QKV VK++G D+RG+++LSM
Sbjct: 659 DRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|187471094|sp|A8IGA3.2|PNP_AZOC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 724
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/693 (50%), Positives = 487/693 (70%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ + +G + +E G++ARQA +V S DT +LATVVS ++P +FFPLT
Sbjct: 1 MFDIHREELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG +FKREG+PSE+ET++SRLIDRPIRPLF +GY N+ Q+VV VL+
Sbjct: 61 VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPD+ S++ S AL++S +PF+GP+G A+VG++ +Y+LNPT E+LK S LDL+VA
Sbjct: 121 DLENDPDVLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+K+L E+++L A++FGH + I AI L + ++ ++P V
Sbjct: 181 GTSDAVLMVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEP-VDHS 239
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTF---KNISKDIYSSLIDNENLTIDINDINCI 360
L +KI I+E +R AY+IK KQ R K+ K + L + D+ +
Sbjct: 240 ALEAKIREIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYFEQLAIDGQEAPKAQDVAEV 299
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L LE+KI+R ILD G+RID R V +RPI GILPR HGS+LFTRG+TQALVVATL
Sbjct: 300 LKGLEAKIVRWAILDDGIRIDGRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATL 359
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT DEQ ID+L G + + F+LHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 360 GTGEDEQFIDSLEGTYKEHFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLP 419
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
++F Y++R+VSEI ESNGSSSMA+VCG L+L+DAGVP+ VAGIAMGLI +GEK
Sbjct: 420 AKHEFPYTLRVVSEILESNGSSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFA 479
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+++AL +AK G ++IL +
Sbjct: 480 VLSDILGDEDHLGDMDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGE 539
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + EL + APR+ +KI KIR+VIG GG IR + E+TG +I+I D+G I
Sbjct: 540 MSKALTSARAELGEHAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTIK 599
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
IAS + S + A I+ + ++G +Y G V+++ DFGA + KDGL+HISQ+S
Sbjct: 600 IASASGDSIKAAINWIKSIASEPEVGAIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLSK 659
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV +D +KE KV+VK++G D+RG+ +LSM
Sbjct: 660 ERVAKSSDVVKEGDKVKVKLVGFDERGKTRLSM 692
>gi|104780032|ref|YP_606530.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas entomophila
L48]
gi|122985959|sp|Q1IF39.1|PNP_PSEE4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|95109019|emb|CAK13715.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Pseudomonas entomophila L48]
Length = 701
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/691 (51%), Positives = 476/691 (68%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK+F++G +++E G IARQAT +VLV+++ D +L TVV K FFPL+
Sbjct: 1 MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEG++NE+Q+V V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQL S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT A++ VESE+++L ED +L A++F H++ + I A+ EL + +W P K+
Sbjct: 181 AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIKAVKELAAEAAKPTWDWKPADKN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L I + + Y I K R + +D + E ++ I
Sbjct: 241 SALFDAIRAEFGEAVSQGYTITVKADRYARLGEL-RDQAVAKFSGEEGQPSAGEVKDIFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +RP++I G+LP+THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PPF+ G+ GR+G RREIGHGRLA+R++ +LP
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + + ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QIIGESRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+RI +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDVLKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|338998849|ref|ZP_08637510.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. TD01]
gi|338764231|gb|EGP19202.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. TD01]
Length = 720
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/693 (50%), Positives = 493/693 (71%), Gaps = 5/693 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N + K+F+YG +++E G IARQAT +V+V++++TV+L TVV+ K+ FFPL+V
Sbjct: 8 NPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDETVVLCTVVAKKEANPNQPFFPLSVH 67
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YA G+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ VLS +
Sbjct: 68 YQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDR 127
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVAG 244
DPDIA+++G S ALSI+ +PF GP+G A+VG+ + + Y LNPT E+LK S LD++VAG
Sbjct: 128 NHDPDIAALLGTSAALSIAGVPFNGPIGAARVGFNEEQGYFLNPTVEELKTSELDMVVAG 187
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE A++ VESE+++L ED +L A++FGH++M++A++AI ELV G+ + +W P ++
Sbjct: 188 TENAVLMVESEAQELLEDEMLGAVLFGHQEMQVAVSAIKELVAEAGKPRWDWQPTEENVA 247
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTID----INDINCI 360
L + + N E K+ AY+I +K R + + + L+ E + +D+
Sbjct: 248 LKTAMANAFEAKVGDAYRITDKMARQDALSALKDEAVAQLVAAEGEETEGKFSKDDVKGA 307
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
LE +++R +++ RID R +RP++I G+LP+THGS++FTRG+TQA+ +ATL
Sbjct: 308 FAGLEKRVVRSRVVKGEPRIDGRDNTTVRPLAIEVGVLPKTHGSAVFTRGETQAIAIATL 367
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT RD Q I++L GE D FMLHYN PP+ G+ G G PKRREIGHGRLA+R + +LP
Sbjct: 368 GTLRDSQLIESLEGERKDRFMLHYNFPPYCVGEAGFFGGPKRREIGHGRLARRGVQAMLP 427
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+ + F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+KD +
Sbjct: 428 SEDVFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLVKDEDGYA 487
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+L+DILGDED GDMDFKVAG+ G+TALQMDIKI GI +I++ AL +A IL +
Sbjct: 488 VLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMEKALQQAYDARISILAQ 547
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + + ++S+ AP + TIKIDP KIRDVIGKGG+TIR + E+TG ID++D+G +
Sbjct: 548 MNDVISQSRTDVSENAPSMATIKIDPDKIRDVIGKGGATIRKICEDTGASIDLDDDGTVR 607
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I + + + ++A + +T +IGK+Y G V+R+ DFGA + I+ G DGL+HISQI +
Sbjct: 608 IYAEDKAAAKKAIDTVLAITAEAEIGKLYNGKVVRIADFGAFVNIMPGTDGLVHISQIVA 667
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RVN + DFL E V VKVL ID+R R+KLS+
Sbjct: 668 ERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSI 700
>gi|333909203|ref|YP_004482789.1| polyribonucleotide nucleotidyltransferase [Marinomonas posidonica
IVIA-Po-181]
gi|333479209|gb|AEF55870.1| Polyribonucleotide nucleotidyltransferase [Marinomonas posidonica
IVIA-Po-181]
Length = 702
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/685 (50%), Positives = 481/685 (70%), Gaps = 2/685 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEK 129
K+F++G+ +++E G IARQAT +VL +I D +LATVV K FFPL+V Y E+
Sbjct: 6 KTFQFGNDTVTLETGRIARQATGAVLCTIGDAQVLATVVGAKSAAPGQGFFPLSVHYQER 65
Query: 130 AYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
AYA G+IPG F KREG+PSE+ET+ SRLIDRPIRPLFP+G++NE+Q+V V+S N +D
Sbjct: 66 AYAVGKIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVVCTVMSTNTNLDA 125
Query: 190 DIASIIGVSTALSISELPFLGPLGVAKVGYID-GKYILNPTTEQLKKSHLDLLVAGTEKA 248
DIA+++ S AL+IS +PF GP+G A+VG+ D Y+LNP+ +L+ S LD++VAGT+ A
Sbjct: 126 DIAAMLATSAALTISGIPFNGPIGAARVGFNDESGYVLNPSYSELESSLLDMVVAGTKDA 185
Query: 249 IITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK 308
++ VESE+++L ED +L A++F H++M+ AI+AI E G+ + W P + +L
Sbjct: 186 VLMVESEAQELTEDEMLGAVLFAHKEMQAAISAITEFAAEAGKPRWEWQPEAANVSLQEA 245
Query: 309 IINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKI 368
+ + +I AY I K R + ++L+ E + D+ + LE +I
Sbjct: 246 VESGYAAQIEDAYGISEKMARYAQLGQVRDAAVAALVTEEGEFTEA-DVTSVFSKLEKRI 304
Query: 369 IRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQK 428
+R++++D RID R +RPI++ G+L +THGSSLFTRG+TQA+ TLGTSRD Q
Sbjct: 305 VRRRVIDGKPRIDGRDNKTVRPINVEVGLLSKTHGSSLFTRGETQAIATCTLGTSRDSQM 364
Query: 429 IDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYS 488
D L GE DSFMLHYN PP++ G+ GR+G RREIGHGRLA+R + VLP +F Y+
Sbjct: 365 TDGLTGEGKDSFMLHYNFPPYSVGECGRMGGVGRREIGHGRLARRGVQAVLPTEEEFPYT 424
Query: 489 IRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGD 548
IR+VSEITESNGSSSMASVCG L+++DAGVP+ VAGIAMGLIK+ + +L+DILGD
Sbjct: 425 IRIVSEITESNGSSSMASVCGASLSMMDAGVPLKAPVAGIAMGLIKEDDGFAVLTDILGD 484
Query: 549 EDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKC 608
ED GDMDFKVAGT GITALQMDIKI GI +I+ IAL +A + ++IL +M +
Sbjct: 485 EDHLGDMDFKVAGTEEGITALQMDIKIEGINEEIMDIALSQALEARAHILREMAKTIGYA 544
Query: 609 KNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVS 668
+ E+S AP + TIKIDP KIRDVIGKGG+TIR++TE+TG ID++D+G + I + + +
Sbjct: 545 RPEVSPNAPSMATIKIDPEKIRDVIGKGGATIRSITEQTGASIDLDDDGTVRIYAADKAA 604
Query: 669 GQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITD 728
A +I ++T ++ K+Y G V+RL +FGA + IL GKDGL+HISQI+ +R+ +TD
Sbjct: 605 SDAALLKIHEITAEAEVDKLYKGKVVRLAEFGAFVNILPGKDGLVHISQIAEERIRAVTD 664
Query: 729 FLKENQKVRVKVLGIDDRGRIKLSM 753
FL E+Q+V VKVL +D RGRIKLSM
Sbjct: 665 FLAEDQEVIVKVLDVDARGRIKLSM 689
>gi|329896238|ref|ZP_08271416.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC3088]
gi|328921909|gb|EGG29276.1| Polyribonucleotide nucleotidyltransferase [gamma proteobacterium
IMCC3088]
Length = 746
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/690 (50%), Positives = 478/690 (69%), Gaps = 3/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N I+K+F+YG +++E G IARQAT +VLV++E+T +L TVV+ K +FFPL+V
Sbjct: 1 MNPIVKTFQYGGQTVTLETGRIARQATGAVLVTVENTTVLVTVVAAKSQKPGQDFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK+YA G+IPG FFKREG+PSE+ET+ SRLIDRPIRPLF +G++NE+Q++ V++ +
Sbjct: 61 HYQEKSYAVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFADGFMNEVQVMCTVMAAD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLVA 243
IDPDI ++IG S AL+IS +PF GP+G A+VG+ Y+LNP LK S LD++VA
Sbjct: 121 DHIDPDIPAMIGTSAALAISGVPFNGPIGAARVGFNAQEGYLLNPDYNALKGSDLDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+K+L ED +L A++F H++M+ I AINELV G+ K +W ++
Sbjct: 181 GTKDAVLMVESEAKELTEDQMLGAVLFAHQEMQTVIAAINELVAEAGKPKWDWQAPAVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ + + + AY+I K R I +L + + D D+ +
Sbjct: 241 ALVEAVRAQAGADLGAAYRITEKAERYARVDEIRTACVEALAVEDGPSAD--DVKDVFKS 298
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R++IL RID R +R I+ +LPR HGS+LFTRG+TQA+ TLG+
Sbjct: 299 VEKALVRQRILAGEPRIDGRDGKTVRQIACSVDLLPRVHGSALFTRGETQAIGAVTLGSP 358
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL GE D+FMLHYN PP++ G+ GR+G RREIGHGRLA+R L VLPN +
Sbjct: 359 RDAQIIDALEGERKDAFMLHYNFPPYSVGEAGRVGATGRREIGHGRLARRGLAAVLPNQD 418
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVC G LA++ AGVP+ VAGIAMGL+K+G + +L+
Sbjct: 419 EFPYTIRVVSEITESNGSSSMASVCVGSLAMMAAGVPLKAPVAGIAMGLVKEGNQFAVLT 478
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT G+TALQMDIKI GI I++IAL +A +IL +M +
Sbjct: 479 DILGDEDHLGDMDFKVAGTAAGVTALQMDIKIEGINEQIMEIALEQALHARLHILGQMNS 538
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + S AP ++T+K+D KIRD+IGKGG TIR +TEE+G +DI+D+G + I
Sbjct: 539 VISTAREVTSADAPSMVTLKVDSDKIRDIIGKGGVTIRAITEESGATVDIDDDGTVKIFG 598
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
N + A + ++T ++G+VY G V R+ DFGA + IL GKDGL+HISQI+++RV
Sbjct: 599 QNQAARDRAVEMVMEITAEAEVGQVYEGTVARIVDFGAFVTILPGKDGLVHISQIANQRV 658
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TDFL+E Q VRVKVL +D RGRIKLS+
Sbjct: 659 EKVTDFLEEGQTVRVKVLDVDQRGRIKLSI 688
>gi|170743024|ref|YP_001771679.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
4-46]
gi|226702664|sp|B0UEX5.1|PNP_METS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|168197298|gb|ACA19245.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium sp.
4-46]
Length = 725
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/692 (49%), Positives = 492/692 (71%), Gaps = 4/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ + +G K+ +E G++ARQA +V+ S +T +LATVVS K+P +F PLT
Sbjct: 1 MFDTQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKPGIDFLPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+AYAAGRIPG +FKREG+PSE+ET++SRLIDRPIRPLF EG+ N+ Q+VV VLS
Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI S++ S AL++S +PF+GP+G A+VGY+ G+Y LNPT +++++S LDL+VA
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEESSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+K+LPED++L A++FGH+ + I AI L + ++ ++ P D
Sbjct: 181 GTDAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPT--DL 238
Query: 304 TLISK-IINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCIL 361
T + K ++ I E +R+AY+ KQ R + + ++L+ + + +
Sbjct: 239 TEVEKAVLEIGEADLREAYRKTVKQERYAAVDAVKAKVMAALVPEGGEAKFEPEKVKAAF 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
++++K++R ILD G RID R V +RPI G+LPR HGS+LFTRG+TQALVVATLG
Sbjct: 299 KEVQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T DEQ IDAL G + ++F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 TGDDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPP 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLI +GE+ +
Sbjct: 419 AHEFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERYAV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT G+T+LQMDIKI GIT +I+++AL +AK+G ++IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTEEGVTSLQMDIKIAGITEEIMRVALDQAKEGRAHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + EL + APR+ T++I KIR+VIG GG IR + E+TG +IDI D G++ I
Sbjct: 539 AKALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTGVVKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS + + + A I + + G +Y G V++ +FGA + KDGL+HIS+++ +
Sbjct: 599 ASSDGKAIKAAYNWIRSIVAEPEAGMIYDGTVVKTMEFGAFVNFFGAKDGLVHISELAPQ 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +TD +KE KV+VK LG D+RG+I+LSM
Sbjct: 659 RVAKVTDVVKEGDKVKVKFLGQDERGKIRLSM 690
>gi|388455156|ref|ZP_10137451.1| polynucleotide phosphorylase/polyadenylase [Fluoribacter dumoffii
Tex-KL]
Length = 722
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/688 (52%), Positives = 485/688 (70%), Gaps = 3/688 (0%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K K +G + + +E GEIARQA +VL S+ T +LATVV K+ FFPLTV+Y
Sbjct: 3 KFTKEVAFGDHTLILETGEIARQADGAVLASMNGTQVLATVVGKKEGGEENGFFPLTVNY 62
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
EK YA G+IPG F KREG+PS+ ET+ISRLIDRPIRPLFP+G+ NE+Q++V VLS+NP+
Sbjct: 63 QEKFYAVGKIPGGFNKREGRPSDNETLISRLIDRPIRPLFPDGFCNEVQVIVTVLSLNPE 122
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
+ DI +++ S AL++S +PF GP+G A+VGY DG Y+LNP+ + L++S LDL+VAGT+
Sbjct: 123 VSSDIVAMVASSAALALSGVPFNGPIGAARVGYKDGIYLLNPSRKDLEQSKLDLVVAGTK 182
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI+ VESE+K+L EDI+ AI+FGHE MK I AI EL G+ + W D L
Sbjct: 183 DAILMVESEAKELSEDIMRGAIMFGHEMMKNVIKAIEELAGQAGKSRWEWTAPEVDTHLQ 242
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSL-IDNENLTIDINDINCILYDLE 365
++ ++ + + +AY I++KQ R + + ++L +NE L D+ I + ++E
Sbjct: 243 ERVADMVKTDVEEAYLIRDKQERYKRLDVLKEQTIAALQAENEELKADV--IGNMFVEIE 300
Query: 366 SKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRD 425
+R +ILD RID R +RPISIRT +L RTHGS LFTRG+TQA+VVATLG RD
Sbjct: 301 RATVRNRILDGEPRIDGRDQKTVRPISIRTKLLERTHGSVLFTRGETQAIVVATLGNERD 360
Query: 426 EQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKF 485
Q +D ++GE D FMLHYN PP++ G+ G +G PKRREIGHGRLAKRA++ VLP N+F
Sbjct: 361 AQILDNIIGETKDRFMLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRAIMAVLPEANEF 420
Query: 486 NYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDI 545
Y +R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAG+AMGLIK+G++ +L+DI
Sbjct: 421 PYILRVVSEITESNGSSSMATVCGTSLALMDAGVPLKAPVAGVAMGLIKEGDRYAVLTDI 480
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
LGDED GDMDFKVAGT GITALQMDIKI GIT +I++ AL +A +G +IL M +
Sbjct: 481 LGDEDHLGDMDFKVAGTEQGITALQMDIKIHGITNEIMEQALDQALEGRLHILGVMNNAL 540
Query: 606 PKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN 665
+ + ELSK APR+ T+K+ KIR +IGKGG+TI+ L E TG IDI+D G+I + S +
Sbjct: 541 AEHREELSKHAPRITTMKVAEDKIRTIIGKGGATIKGLIESTGVSIDIDDTGVIQLFSPD 600
Query: 666 SVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI 725
+ +EA+++I+ L +++G+ Y G V ++ DFGA I +L GKDGLLHISQI + R
Sbjct: 601 MNALEEAQKQIKALIAEIEVGQTYQGKVSKIVDFGAFINLLPGKDGLLHISQICNDRSQK 660
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ L+E Q++ V V GID +GR+KL
Sbjct: 661 VESVLQEGQEIEVFVAGIDKQGRVKLEW 688
>gi|397688159|ref|YP_006525478.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
DSM 10701]
gi|395809715|gb|AFN79120.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
DSM 10701]
Length = 701
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/691 (51%), Positives = 485/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKTADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNPT EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFNGPIGAARVAFHPESGYLLNPTYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+K+L ED +L A++F H++ ++ I A+ EL G+ +W P ++
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVIQAVAELAAEAGKPTWDWQPKAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ I + I +AY I KQ R + + I + NE ++
Sbjct: 241 TELLNAIRSEFGEAISQAYTIIIKQDRYARLGELREQIVARFA-NEEGQPSAAEVKDAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +R ++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLGKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D F+LHYN PP++ G+ GR+G RREIGHGRLA+R + +LP+
Sbjct: 360 ARDAQILDTLEGEKKDPFLLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRGICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S +R
Sbjct: 600 GETKEAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDVLKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|379009788|ref|YP_005267601.1| polynucleotide phosphorylase/polyadenylase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
gi|375158312|gb|AFA41378.1| polynucleotide phosphorylase/polyadenylase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
Length = 695
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/694 (52%), Positives = 503/694 (72%), Gaps = 5/694 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVS-CKDPTS--TYNFF 120
+ N +I+ F+YG + I+IE G IARQATS+V+++++DT +L +VVS K+ S NFF
Sbjct: 1 MLNSVIQKFQYGKHIITIETGTIARQATSAVIINMDDTTVLISVVSDTKERMSGTQQNFF 60
Query: 121 PLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYV 180
PL ++Y E+AYAAGR PG FF+REG+P+E E ++SRLIDRPIRPLFP+ + +++QI+ V
Sbjct: 61 PLKINYQERAYAAGRFPGGFFRREGRPNENEILVSRLIDRPIRPLFPKNFFHDVQIIATV 120
Query: 181 LSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDL 240
LSVNP+I+PDIAS+IGVS ALS+S LPF GPLG A++GYI+ +YILNPTT +L S L++
Sbjct: 121 LSVNPEINPDIASMIGVSAALSLSGLPFKGPLGAARIGYINEEYILNPTTTELMNSKLNM 180
Query: 241 LVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIV 300
+++GT AI+ VESESK L ED IL A+++GH+K +I I INELV+ V K WD +
Sbjct: 181 VISGTSNAILMVESESKILTEDQILQAMLYGHKKQQIIIKNINELVKKVSCSKCEWDKLK 240
Query: 301 K-DKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINC 359
D L I N ++++AY I K+ R +I I+++LI+N N +
Sbjct: 241 NIDLELQEYISNNFRKELKEAYLISEKKKRSEKIADIKNKIFNNLIENNNNANIE-QVEF 299
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
++ ++E +I+R +IL RID R N IR ++I+ GIL RTHGS++FTRG+TQ+L + T
Sbjct: 300 VIKNIEREIVRNRILSGKPRIDGRKNNVIRDLNIQIGILKRTHGSAIFTRGETQSLSIVT 359
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT RD Q ID L+G+ TD F+ HYN PP+ G+IG IG PKRREIGHG+LAKR+L+ V+
Sbjct: 360 LGTERDAQNIDELIGDRTDRFLFHYNFPPYCVGEIGIIGSPKRREIGHGKLAKRSLMAVM 419
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
PN++ F Y++R+VSEITESNGSSSMASVC LAL+DAGVPI +AGIAMGLIK+ +
Sbjct: 420 PNSSAFPYTVRIVSEITESNGSSSMASVCAASLALMDAGVPIKSSIAGIAMGLIKEKNEF 479
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
VILSDILGDED GDMDFKVAG GITALQMDIKI IT +I++ ALY+A++ +IL
Sbjct: 480 VILSDILGDEDFLGDMDFKVAGNTEGITALQMDIKIEEITSEILKEALYRAREARIHILH 539
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M + + KNE+S FAPR+ I I+P KI++VIGKGGS IR LTE+T + I+I D+G +
Sbjct: 540 AMNKCIKEPKNEISVFAPRIYKININPEKIKNVIGKGGSVIRMLTEKTQSAIEIEDDGTV 599
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
+ S N+ + Q+A + I+ +T+ +I + Y + R+ +FGA + +GK+GL+HISQIS
Sbjct: 600 KVISNNAENAQKALKEIQNITDETKIHQTYLAKITRIVNFGAFASLSNGKEGLIHISQIS 659
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++N I+ LK QKV VKV+ ID GRI+L+M
Sbjct: 660 HHKINDISKHLKLGQKVSVKVVEIDRYGRIRLTM 693
>gi|312112862|ref|YP_004010458.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
ATCC 17100]
gi|311217991|gb|ADP69359.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
ATCC 17100]
Length = 709
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/691 (50%), Positives = 491/691 (71%), Gaps = 4/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ + ++G K+++E G IARQA +VL +T +LATVV +D + +FFPLT
Sbjct: 1 MFDIFREEVEWGGRKLTLETGRIARQADGAVLAHYGETSVLATVVGERDADPSKDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EKAYAAG+IPG +FKREG+P+ERET++SRLIDRPIRPLF G+ NE Q++V VLS
Sbjct: 61 VNYQEKAYAAGKIPGGYFKREGRPTERETLVSRLIDRPIRPLFAHGFKNETQVIVTVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI +++ S AL+IS LPFLGP+ ++VGY G+YILNPT++Q+K S LDL+VA
Sbjct: 121 DMENDPDIVAMVAASAALTISGLPFLGPIAASRVGYSKGEYILNPTSDQIKASDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD-PIVKD 302
GT A++ VESE+K+L EDI+L A++FG + K I+AI L + ++ W P K+
Sbjct: 181 GTVDAVLMVESEAKELSEDIMLGAVVFGQQGYKPVIDAIIGLAEQAAKEP--WTIPDAKN 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ SK+ + E ++KA+QI KQ R + + E+ + N +
Sbjct: 239 E-FESKVKKLVEKDLKKAFQIAGKQERQTKVAEAKAKAIAEFVSAESTAGEKNKVAEAFK 297
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E ++R IL G RID R + +RPI + G++PRTHGSSLFTRG+TQALVVATLGT
Sbjct: 298 EIEKHVVRTSILKTGKRIDGRDLKTVRPILSQVGVIPRTHGSSLFTRGETQALVVATLGT 357
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
DEQ ID+L G + +SF+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P++P +
Sbjct: 358 GEDEQWIDSLEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMMPKS 417
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+ F Y++R+VSEITESNGSSSMASVCG L+L+DAGVPI VAGIAMGLIK+ E V +L
Sbjct: 418 DTFPYTVRVVSEITESNGSSSMASVCGASLSLMDAGVPIKAPVAGIAMGLIKEAEGVAVL 477
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDI+GDED GDMDFKVAG+ NG+TALQMDIKI GIT +I++IAL +A +G +IL +M
Sbjct: 478 SDIIGDEDHLGDMDFKVAGSANGVTALQMDIKITGITTEIMKIALEQAHEGRLHILGEMS 537
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + EL +FAPR+ TI I KIR+VIG GGS IR++ EE+G +IDI+D+G + IA
Sbjct: 538 KALNAARGELGEFAPRIETITIPTDKIREVIGSGGSVIRSIVEESGAKIDISDDGTVKIA 597
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ N S Q+A RI+ + ++G +Y G V+++ +FGA + +DGL+HISQ++ +R
Sbjct: 598 AANLSSIQDAINRIKSIASEPEVGVIYKGKVVKIVEFGAFVNFFGSRDGLVHISQMAERR 657
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ ++ +K+ Q+V VK LG D+RG+++L+M
Sbjct: 658 LKHASEVVKDGQEVYVKCLGFDERGKVRLTM 688
>gi|330504823|ref|YP_004381692.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
NK-01]
gi|328919109|gb|AEB59940.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas mendocina
NK-01]
Length = 701
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/691 (50%), Positives = 484/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+K+L ED +L A++F HE+ ++ I A+ EL G+ +W P ++
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHEEFQVVIQAVAELAAEAGKPTWDWQPKPEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ I I +AY I KQ R + + + L ++E ++
Sbjct: 241 TALLNAIRGEFGEAISQAYTITVKQDRYARLGELRDQVVAKLANDEGAP-SAAEVKEAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +R ++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LP+
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+ +G+K +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S +R
Sbjct: 600 GETKEAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 690
>gi|406038391|ref|ZP_11045746.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter ursingii
DSM 16037 = CIP 107286]
Length = 697
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/690 (51%), Positives = 484/690 (70%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA ++VL+++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQA-NTVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+G A+VG I+G+Y+LNP EQL +S LDL+VA
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W K++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPSKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
TL+ ++ E KI +AY I KQ R + + + + + T +++N + D
Sbjct: 242 TLLEQLKAAFESKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLERAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAYAGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S FAP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARPEISMFAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + + A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++RV
Sbjct: 602 ESKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTM 691
>gi|384261348|ref|YP_005416534.1| Polyribonucleotide nucleotidyltransferase [Rhodospirillum
photometricum DSM 122]
gi|378402448|emb|CCG07564.1| Polyribonucleotide nucleotidyltransferase [Rhodospirillum
photometricum DSM 122]
Length = 710
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/691 (50%), Positives = 480/691 (69%), Gaps = 6/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K ++G + +E G++ARQA +V+ S+ DT +L T V + S ++FFPLT
Sbjct: 3 MFKVFRKEIEWGGRTLVLETGKVARQADGAVMASLGDTTVLCTAVGARK-ASAFDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK +AAG+IPG FFKREG+PSERET++SRLIDRPIRPLF EGY E Q+V VL
Sbjct: 62 VNYQEKTFAAGKIPGGFFKREGRPSERETLVSRLIDRPIRPLFVEGYRCETQVVATVLCH 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI S+IG S AL++S LPFLGP+G A+VG IDG ++LNPT EQ +S LDL+VA
Sbjct: 122 DLENDPDIVSMIGASAALTLSGLPFLGPIGAARVGMIDGAFVLNPTREQQTRSCLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT + ++ VESE+K+L E +L+A++FGHE + INAI EL + ++ +P
Sbjct: 182 GTREGVLMVESEAKELTEQQMLDAVMFGHESYQPVINAIIELAEQCAREPRAVEPPSPAL 241
Query: 304 TLIS-KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
I K+ ++E +R AY +K R + + ++L ++ + + +
Sbjct: 242 VAIEDKVRALAEAGLRAAYAEADKMARHDRVSAVKDHVVAALAEDPAKDL----VAGVFK 297
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE +I+R ILD G RID R +RPI G+LPR HGS+LFTRG+TQALVV TLGT
Sbjct: 298 DLEKEIVRGAILDTGRRIDGRDTRTVRPIEAIVGVLPRAHGSALFTRGETQALVVTTLGT 357
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+DEQ IDAL GE+ ++FMLHYN PP++ G+ GR+G P RREIGHG+LA RAL P++P
Sbjct: 358 GQDEQIIDALEGEYRENFMLHYNFPPYSVGETGRLGSPGRREIGHGKLAWRALHPMMPPK 417
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLIK+ ++ +L
Sbjct: 418 SEFPYTVRIVSEITESNGSSSMATVCGSSLALMDAGVPLKAPVAGIAMGLIKEEDRFAVL 477
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+T+LQMDIKI IT +I+ IAL +A+ G ++IL +M
Sbjct: 478 SDILGDEDHLGDMDFKVAGTAQGVTSLQMDIKITSITREIMAIALDQARDGRTHILGEMA 537
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++ LS FAPR+ TIKI P K+R+VIG GG IR +TE TGT+IDI D+G I IA
Sbjct: 538 KALGDARDGLSDFAPRITTIKIPPQKVREVIGSGGKVIREITETTGTKIDIEDDGTIKIA 597
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
S + + Q A I + ++G +Y G V+++ DFGA + L +DGL+HIS++SS+R
Sbjct: 598 SADGDAAQRAVDWIRGIVAEPEMGAIYIGKVVKVMDFGAFVNFLGTRDGLVHISELSSER 657
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD +V+VK +G DDRG++KLSM
Sbjct: 658 VRKVTDVTNVGDQVKVKCIGFDDRGKVKLSM 688
>gi|395778736|ref|ZP_10459248.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
Re6043vi]
gi|423714950|ref|ZP_17689174.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
F9251]
gi|395417944|gb|EJF84281.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
Re6043vi]
gi|395430434|gb|EJF96476.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
F9251]
Length = 731
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/684 (50%), Positives = 489/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ +++E G+IARQA +V+ + +T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +PSE ET++SRLIDRPIRPLF EGY N+ Q++V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+Y+LNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIAASAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIIN- 311
ESE+++LPEDI+L A++FGH+ ++ I+AI +L + + ++ P +D + + K +
Sbjct: 190 ESEAQELPEDIMLGAVMFGHKGLQPVIDAIIKLAEVAAKDPRDFVP--EDLSDLEKAMQE 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKII 369
++E IRKAY I +KQ R + ++ I ++ + I + L++KI+
Sbjct: 248 MAEQGIRKAYTITDKQERYAAIDALKTEVVHKFIPETEDDCQFSADQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLGT DEQ +
Sbjct: 308 RGNILDTERRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYV 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DAL G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LP F Y+I
Sbjct: 368 DALTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKDGRIHILHEMGKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 TELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASADAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ DFGA I +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGAIYQGTVVKTADFGAFINFFGSRDGLVHISQLASERVTKTTDI 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|50083658|ref|YP_045168.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ADP1]
gi|81393846|sp|Q6FF12.1|PNP_ACIAD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49529634|emb|CAG67346.1| polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Acinetobacter sp. ADP1]
Length = 697
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/690 (51%), Positives = 481/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN I K F++G +++ +E G +ARQA ++VLV++ +L VV+ + +FFPLT
Sbjct: 3 MFNIIRKEFQFGQHQVVLETGRVARQA-NTVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQI V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQITATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+G A+VG I+G+Y+LNP EQL +S LDL+VA
Sbjct: 122 DKTMDADIAAMLGASAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IA+ AI E G + W K++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAAGAVESTWVAPTKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
TL+ ++ E KI +AY I KQ R + + + + + T +++N + D
Sbjct: 242 TLLEQLKAAFEAKISEAYTIAVKQDRYTALDALYAEAVAQFVPENDETGIADEVNELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAYAGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARAEISAHAPTFEVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++RV
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D LKE Q V+V+V +D+RGRIKLSM
Sbjct: 662 ANVSDVLKEGQDVKVQVADVDNRGRIKLSM 691
>gi|395767092|ref|ZP_10447629.1| polyribonucleotide nucleotidyltransferase [Bartonella doshiae NCTC
12862]
gi|395414851|gb|EJF81288.1| polyribonucleotide nucleotidyltransferase [Bartonella doshiae NCTC
12862]
Length = 734
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/684 (51%), Positives = 491/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ ++IE G+IARQA +V+ + +T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
G+IPG +FKRE +P+E ET+ISRLIDRPIRPLF +GY N+ Q++V V+ + + +PDI
Sbjct: 70 VGKIPGGYFKRENRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+YILNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGIPFMGPIAGARVGYCNGQYILNPNIDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK-IIN 311
ESE+ +LPEDI+L A++FGH+ ++ I+AI +L + + ++ P +D + + K ++
Sbjct: 190 ESEAHELPEDIMLGAVMFGHKGLQPVIDAIIKLAEVAAKDPRDFVP--EDLSDLEKSMLE 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKII 369
++E IRKAY I +KQ R + +I + + E+ + I + L++KI+
Sbjct: 248 MAEQNIRKAYTITDKQERYAAIDALKTEIINKFMPETEEDCKFTADQIATVFKKLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD G RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLGT DEQ I
Sbjct: 308 RWNILDTGKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYI 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RAL P+LP F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPTKEAFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+ E+ ILSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKESERFAILSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNQMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 TELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASADAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ +FGA + +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGVIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLASERVTKTTDV 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|226951862|ref|ZP_03822326.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
27244]
gi|294649119|ref|ZP_06726561.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
haemolyticus ATCC 19194]
gi|226837402|gb|EEH69785.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. ATCC
27244]
gi|292825002|gb|EFF83763.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
haemolyticus ATCC 19194]
Length = 714
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/690 (51%), Positives = 483/690 (70%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN I K F++G +++ +E G +ARQA ++VLV++ +L VV+ + +FFPLT
Sbjct: 20 MFNIIRKEFQFGQHQVVLETGRVARQA-NTVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 78
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 79 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 138
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+G A+VG I+G+Y+LNP EQL +S LDL+VA
Sbjct: 139 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 198
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G K+ +W K++
Sbjct: 199 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAKESDWVAPAKNE 258
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ ++ E KI +AY I KQ R + + + + + T +++N + D
Sbjct: 259 ALLEQLKTAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 318
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 319 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 378
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 379 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 438
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 439 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 498
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 499 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 558
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 559 VISRARAEISANAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 618
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 619 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 678
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+++V+V +D+RGRIKL+M
Sbjct: 679 ANVTDVLKEGQELKVQVADVDNRGRIKLTM 708
>gi|349687343|ref|ZP_08898485.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
oboediens 174Bp2]
Length = 711
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/695 (50%), Positives = 490/695 (70%), Gaps = 14/695 (2%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN K ++G + +E G+IARQA +V+V+ DTV+L T V K +FFPLT
Sbjct: 1 MFNYFRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EKAYAAG+IPG FFKREG+PSE E + SRLIDRPIRPLFPE + NE+Q+V VLS
Sbjct: 61 VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DP + ++IG S AL++S +PF GP+G A+VGY +GKY+LNPT QLK+S LDL+VA
Sbjct: 121 DMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD---PIV 300
GT + ++ VESE+ +L E+++L A+ FGHE + I+AI +L ++ K WD P
Sbjct: 181 GTSEGVLMVESEAVELSEEVMLGAVTFGHEAFQPVIDAIIDLAESAA--KAPWDLAEPTA 238
Query: 301 KDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNIS--KDIYSSLIDNENLTIDINDIN 358
++ L K+ + I AY+ + KQ+R +K ++ +D + I + D +
Sbjct: 239 EEIKLRKKVDKVGRALIADAYKERTKQVR---YKKVAAARDAILAKIGED----DADAAK 291
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
++ DLE+ ++R ++LD G RID R + IRPI GILPR HGS+LFTRG+TQALVVA
Sbjct: 292 PMIKDLEADVVRTEVLDTGFRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVA 351
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT +DEQ +DAL GE+ ++FMLHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+
Sbjct: 352 TLGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPL 411
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP + F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLIK+ E
Sbjct: 412 LPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEDED 471
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+LSDILGDED GDMDFKVAGT G+TALQMDIKI IT +I++IAL +A++G +IL
Sbjct: 472 FAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARQGRLHIL 531
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
+M + + ++++S AP++ TI + KIRDVIG+GG IR + E +G +IDIND+G
Sbjct: 532 GEMAKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGT 591
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
I IA+ + ++A RI +T ++G +Y G V++ DFGA + L +DGL+HIS++
Sbjct: 592 IMIAASSDDQAEKAIERIRGITAEPEVGHIYNGKVVKTADFGAFVNFLGPRDGLVHISEL 651
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ RV+ TD +K+ +V+VKVLG DDRG++KLSM
Sbjct: 652 AQGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSM 686
>gi|163867506|ref|YP_001608705.1| polynucleotide phosphorylase [Bartonella tribocorum CIP 105476]
gi|189037300|sp|A9IMR9.1|PNP_BART1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161017152|emb|CAK00710.1| polyribonucleotide nucleotidyltransferase [Bartonella tribocorum
CIP 105476]
Length = 731
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/684 (51%), Positives = 489/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ +++E G+IARQA +V+ + +T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +PSE ET++SRLIDRPIRPLF EGY N+ Q++V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+Y+LNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHMDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIIN- 311
ESE+++LPEDI+L A++FGH+ ++ ++AI +L + + ++ P +D + + K +
Sbjct: 190 ESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVP--EDLSDLEKAMQE 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKII 369
++E IRKAY I +KQ R + +I + + E+ + I + L++KI+
Sbjct: 248 MAEQDIRKAYTITDKQERYAAIDALKTEIINKFMPETEEDCQFSTDQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI ILPRTHGS+LFTRG+TQA+VVATLGT DEQ I
Sbjct: 308 RGNILDTKKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYI 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DAL G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LP F Y+I
Sbjct: 368 DALTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKDGRIHILNEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ I I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 AELSEFSPRIEVINIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASADAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ DFGA I +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGAIYQGTVVKTADFGAFINFFGSRDGLVHISQLASERVTKTTDI 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|319405094|emb|CBI78698.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. AR 15-3]
Length = 733
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/684 (50%), Positives = 494/684 (72%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ + +E G+IARQA +++ + +TV+LATVVS K P NFFPLTV+Y EK YA
Sbjct: 10 EWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
G+IPG +FKRE +PSE ET+ISRLIDRPIRPLF +GY N+ Q++V V+ + + +PDI
Sbjct: 70 VGKIPGGYFKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
+II S AL++S +PF+GP+ A++GY +G+YILNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVAGTENAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI-SKIIN 311
ESE+ +LPED++LNA++FG + + INAI +L + ++ ++ P +D +++ + ++
Sbjct: 190 ESEAHELPEDVMLNAVMFGQKSFQPVINAIIKLAEVAAKEPRDFIP--EDLSILENNMLK 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILYDLESKII 369
+ E +R Y I +KQ R + + + ++ I EN + + I + +L++KI+
Sbjct: 248 MIEQDLRDTYTITDKQKRHAAIDLLKEKVINNFIPEAEENCEFNTDQIATVFKNLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
RK ILD G RID R ++D+RPI G+ PRTHGS+LFTRG+TQALV+ATLGT DEQ I
Sbjct: 308 RKNILDTGKRIDGRNLSDVRPIQSEVGLFPRTHGSALFTRGETQALVIATLGTGEDEQYI 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+IGRIG P RREIGHG+LA RA+ P+LP F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEQFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGIT+LQMDIKI GIT +I++IAL +AK G +IL +M + + +
Sbjct: 488 DHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKALARAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
+ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS + +
Sbjct: 548 SELSEFSPRIEIMNIPVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIASSDLKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AK I + + ++G +Y G V+++ +FGA + +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKHWILSIVDEPEVGSIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLASERVAKTTDI 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+I+LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKIRLSM 691
>gi|220922849|ref|YP_002498151.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
nodulans ORS 2060]
gi|254782728|sp|B8IGX3.1|PNP_METNO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219947456|gb|ACL57848.1| 3' exoribonuclease [Methylobacterium nodulans ORS 2060]
Length = 725
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/692 (50%), Positives = 489/692 (70%), Gaps = 4/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ + +G K+ +E G++ARQA +V+ S +T +LATVVS K+P +F PLT
Sbjct: 1 MFDVQREELLWGGRKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKPGIDFLPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+AYAAGRIPG +FKREG+PSE+ET++SRLIDRPIRPLF EG+ N+ Q+VV VLS
Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI S++ S AL++S +PF+GP+G A+VGY+ +Y LNPT ++++ S LDL+VA
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGSSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+LPED++L A++FGH+ + I AI L + ++ ++ P D
Sbjct: 181 GTEAAVLMVESEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPT--DL 238
Query: 304 TLISK-IINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE-NLTIDINDINCIL 361
+ + K ++ I E +R+AY+ KQ R + + ++L E + +
Sbjct: 239 SEVEKAVLEIGEADLREAYKKTVKQERYAAVDAVKAKVMAALAPEEGEAKFEPETVKAAF 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
++++K++R ILD G RID R V +RPI G+LPR HGS+LFTRG+TQALVVATLG
Sbjct: 299 KEVQAKVVRWNILDTGSRIDGRDVRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T DEQ IDAL G + ++F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 TGDDEQFIDALEGTYKETFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPA 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
++F Y+IR+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLI +GE+ +
Sbjct: 419 AHEFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERFAV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT G+T+LQMDIKI GIT +I+++AL +AK G ++IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALDQAKDGRAHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + EL + APR+ T++I KIR+VIG GG IR + E+TG +IDI D G+I I
Sbjct: 539 AKALTAARPELGEHAPRIETMQIPTDKIREVIGTGGKVIREIVEKTGAKIDIQDTGVIKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS ++ + + A I + + G +Y G V++ +FGA I KDGL+HIS+++ +
Sbjct: 599 ASSDAKAIKAAYNWIRSIVAEPEAGMIYDGTVVKTMEFGAFINFFGAKDGLVHISELAPQ 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +TD +KE KV+VK LG D+RG+I+LSM
Sbjct: 659 RVAKVTDVVKEGDKVKVKFLGQDERGKIRLSM 690
>gi|307546723|ref|YP_003899202.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
2581]
gi|307218747|emb|CBV44017.1| polynucleotide phosphorylase/polyadenylase [Halomonas elongata DSM
2581]
Length = 710
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/690 (50%), Positives = 491/690 (71%), Gaps = 1/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+F+YG +++E G IARQA+ +V+V+++DTV+L TVV+ KD + FFPL+V
Sbjct: 1 MNPVKKTFEYGRSTVTLETGRIARQASGAVMVTMDDTVVLCTVVAKKDVNPSQPFFPLSV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EK YA G+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ VLS +
Sbjct: 61 HYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVA 243
DPDIA++IG S AL+IS +PF GP+G A+VG+ + Y LNP+ E+L S L+++VA
Sbjct: 121 RNHDPDIAAMIGTSAALAISGVPFNGPIGAARVGFTEEHGYFLNPSVEELASSELNMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTEKA++ VESE+ +L ED +L A+++GH++M++AINAI EL G+ + +W ++
Sbjct: 181 GTEKAVLMVESEANELLEDEMLGAVLYGHQEMQVAINAIQELAAEAGKPRWDWQAPAENT 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L + + E K+ +AY+I +K R + + L E+ D +++
Sbjct: 241 ALKDAMASGFEAKVGEAYRITDKMQRQDALAALKDEAVEQLAGEEDGKFDADEVKGAFAS 300
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +++R +++ RID R + +RP+ I G LP+THGS++FTRG+TQA+VVATLGT
Sbjct: 301 LEKRVVRSRVVKGEPRIDGRDLKTVRPLDIEVGSLPKTHGSAIFTRGETQAVVVATLGTL 360
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q I++L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLA+R + +LP+ +
Sbjct: 361 RDAQLIESLEGERKDRFLLHYNFPPYCVGEAGFMGGPKRREIGHGRLARRGVEAMLPSED 420
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+KD + +L+
Sbjct: 421 EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPMKAPVAGIAMGLVKDEDGFAVLT 480
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ G+TALQMDIKI GI +I++ AL +A + +ILE+M T
Sbjct: 481 DILGDEDHLGDMDFKVAGSAEGVTALQMDIKIEGINEEIMEQALQQAHEARLHILEQMNT 540
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S+ AP + TIKIDP KIRDVIGKGG+ IR + E+TG ID++D+G + I +
Sbjct: 541 VIGQSREEVSENAPSMATIKIDPEKIRDVIGKGGAMIRKICEDTGASIDLDDDGTVRIYA 600
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A + +T +IGK+Y G V+R+ DFGA + I+ G DGL+HISQI +RV
Sbjct: 601 EEKSAAKAAIDTVLAITAVPEIGKLYRGKVVRIADFGAFVNIIPGTDGLVHISQIVPERV 660
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N + D+L E + VKVL ID+R R+KL++
Sbjct: 661 NDVRDYLNEGDEPIVKVLDIDNRNRVKLTI 690
>gi|409396335|ref|ZP_11247338.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. Chol1]
gi|409119112|gb|EKM95499.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas sp. Chol1]
Length = 701
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/691 (50%), Positives = 482/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++ D +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKTADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL++S +PF GP+G A+V + + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+++L ED +L A++F HE+ + + A+ EL G+ + NW +
Sbjct: 181 AGTKDAVLMVESEARELTEDQMLGAVLFAHEEFQAVVKAVEELAAEAGKPRWNWTAPQAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I KQ R + KD + E ++
Sbjct: 241 TALLDAIRSEFGEAISQAYTITIKQDRYARLGEL-KDQVVAKFSGEEGQPSAGEVKDAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +R ++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDARTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LP+
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS +R
Sbjct: 600 GETKEAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 660 IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 690
>gi|423711015|ref|ZP_17685335.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
Sb944nv]
gi|395414929|gb|EJF81364.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
Sb944nv]
Length = 733
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/684 (50%), Positives = 490/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ +++E G+IARQA +V+ + +T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +PSE ET+ISRLIDRPIRPLF GY N+ Q++V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPSESETLISRLIDRPIRPLFANGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+Y+LNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT-LISKIIN 311
ESE+++LPEDI+L A++FGH+ + ++AI +L + + ++ P +D + L ++
Sbjct: 190 ESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFIP--EDLSDLEEAMLK 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILYDLESKII 369
++E IRKAYQI +KQ R + ++ + + E+ + I + L++KI+
Sbjct: 248 MAEEDIRKAYQITDKQERYAAIDALKTEVINKFMPEMEEDCKFSADQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLGT DEQ +
Sbjct: 308 RWNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYV 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LPN F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPNKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ ILSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAILSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
+ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D G I IAS ++ +
Sbjct: 548 DELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKINIEDNGTIKIASTDAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ +FGA + +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGVIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTSERVTKTTDV 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|254282476|ref|ZP_04957444.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR51-B]
gi|219678679|gb|EED35028.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR51-B]
Length = 717
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/690 (50%), Positives = 478/690 (69%), Gaps = 3/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + KSF+YG +++++E G IARQA+ +V+V++ DT +L TVV+ + +FFPL V
Sbjct: 1 MNVVSKSFQYGGHEVTLETGRIARQASGAVMVTMGDTSVLCTVVAARSMRPGQDFFPLAV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
YIEK Y+ G+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFP G++NE+Q+V V+S
Sbjct: 61 HYIEKTYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVVCTVMSAG 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVA 243
P+IDPDI ++IG S AL+IS PF GP+G A+VG+ + + Y+LNPT LK S LD++VA
Sbjct: 121 PEIDPDIPAMIGTSAALAISGAPFNGPIGGARVGFTEAEGYLLNPTYSALKSSKLDMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VES++ QL ED +L A++F H++M+ I+AINELV + G+ + W D+
Sbjct: 181 GTKDAVLMVESQADQLTEDQMLGAVLFAHQEMQAVIHAINELVADAGKPRWEWQAPAVDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L S + + + +AY+I K R + + L + T D DI +
Sbjct: 241 GLQSAVEAEAGAALGEAYRITEKAARYERVGEVRNAVVEKLAAEDGPTAD--DIKDVFKG 298
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE +I+R++ILD RID R +RPI+ IL + HGS+LFTRG+TQA+ TLG++
Sbjct: 299 LEKRIVRQRILDGEPRIDGRDGRTVRPIACELDILSKVHGSALFTRGETQAIGAITLGST 358
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL GE D FMLHYN PP++ G+ GRIG RREIGHGRLA+R L VLP
Sbjct: 359 RDAQIIDALEGERRDPFMLHYNFPPYSVGEAGRIGFTSRREIGHGRLARRGLAAVLPTEE 418
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVC G L L+ AGVP+ VAGIAMGL+K+G +L+
Sbjct: 419 EFPYTIRVVSEITESNGSSSMASVCVGSLGLMAAGVPLKAPVAGIAMGLVKEGNNFAVLT 478
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT +G+TALQMDIKI GI I++IAL +A + +IL +M
Sbjct: 479 DILGDEDHLGDMDFKVAGTASGVTALQMDIKIEGINEQIMEIALEQALQARLHILGQMNA 538
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + S+ AP ++ +K+D KIRD+IGKGG+TIR +TEE+G +DIND+G + +
Sbjct: 539 VIDAPREITSENAPSMVALKVDSDKIRDIIGKGGATIRQITEESGATVDINDDGTVKVFG 598
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ A I ++T ++G VYTG V R+ DFGA I IL GKDGL+HISQI+ +RV
Sbjct: 599 QTQAARDAAVDMIMEITAEAEVGAVYTGTVARIVDFGAFITILPGKDGLVHISQIAEERV 658
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D+L E ++VRVKVL +D RGRIKLS+
Sbjct: 659 ENVSDYLTEGEEVRVKVLDVDQRGRIKLSI 688
>gi|357026478|ref|ZP_09088578.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium amorphae
CCNWGS0123]
gi|355541593|gb|EHH10769.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium amorphae
CCNWGS0123]
Length = 715
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/698 (50%), Positives = 496/698 (71%), Gaps = 15/698 (2%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G + +E G+IARQA +VL + +T +LATVVS K+P +FFPLT
Sbjct: 1 MFNHHKVEIEWGGRPLVLETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE+ET++SRLIDRPIRPLF +GY N+ QIVV V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI SI+ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++++S LDL+VA
Sbjct: 121 DLENDPDILSIVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHVDEMQESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+K+L ED++L A++FGH+ + I+AI +L + + DP +D
Sbjct: 181 GTTDAVLMVESEAKELGEDLMLGAVMFGHKGFQPVIDAIIKLAEVAAK-----DP--RDF 233
Query: 304 T------LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDIN 355
T L +++ I E+++R AY+I +KQ R + + ++ + E+
Sbjct: 234 TAPDYSALEGEMLKIVENELRDAYKITDKQKRYAAVDAVKAKVKAAFTPAEGEDAKYTSE 293
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
I + +L++K++R ILD G RID R + +R I G+LPRTHGS+LFTRG+TQAL
Sbjct: 294 QIGSVFKELQAKVVRWNILDTGSRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQAL 353
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VVATLGT DEQ +D+L G + + F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+
Sbjct: 354 VVATLGTGEDEQYVDSLTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAI 413
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
P+LP ++F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLIK+
Sbjct: 414 RPMLPTADQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKE 473
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
GE+ +LSDILGDED GDMDFKVAGT NGIT+LQMDIKI GIT +I+QIAL +AK G
Sbjct: 474 GERFAVLSDILGDEDHLGDMDFKVAGTANGITSLQMDIKIDGITEEIMQIALGQAKDGRL 533
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL +M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D
Sbjct: 534 HILGEMAHALSGARAELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAKINIED 593
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IAS N+ + AK+ I + ++G++Y G V++ DFGA + +DGL+HI
Sbjct: 594 DGTVKIASSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHI 653
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQ+++ RV +D +KE KV VK++G D+RG+++LSM
Sbjct: 654 SQLANDRVAKTSDVVKEGDKVWVKLMGFDERGKVRLSM 691
>gi|395780941|ref|ZP_10461385.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
085-0475]
gi|395416816|gb|EJF83178.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
085-0475]
Length = 733
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/684 (50%), Positives = 490/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ +++E G+IARQA +V+ + +T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +PSE ET+ISRLIDRPIRPLF +GY N+ Q++V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPSESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+Y+LNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT-LISKIIN 311
ESE+++LPEDI+L A++FGH+ + ++AI +L + + ++ P D + L ++
Sbjct: 190 ESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFIP--DDLSDLEEAMLK 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILYDLESKII 369
++E IRKAYQI +KQ R + ++ + + E+ + I + L++KI+
Sbjct: 248 MAEEDIRKAYQITDKQERYAAIDALKTEVINKFMPEMEEDCKFSADQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLGT DEQ +
Sbjct: 308 RWNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYV 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LPN F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPNKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ ILSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAILSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
+ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D G I IAS ++ +
Sbjct: 548 DELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKINIEDNGTIKIASTDAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ +FGA + +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGVIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTSERVTKTTDV 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|262374052|ref|ZP_06067329.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
SH205]
gi|262311063|gb|EEY92150.1| polyribonucleotide nucleotidyltransferase [Acinetobacter junii
SH205]
Length = 697
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/690 (51%), Positives = 481/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA ++VLV++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQA-NTVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+G A+VG I+G+Y+LNP EQL +S LDL+VA
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W VK++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPVKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +K+ E KI +AY I KQ R + + + + + T +++N + D
Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYTALDALYAEAVAQFVPENDETGIADEVNELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARPEISMHAPTFEVISINPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQDVKVQVADVDNRGRIKLTM 691
>gi|403053261|ref|ZP_10907745.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
bereziniae LMG 1003]
gi|445427054|ref|ZP_21437775.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
WC-743]
gi|444752156|gb|ELW76847.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp.
WC-743]
Length = 697
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/690 (51%), Positives = 480/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN I K F+YG +++ +E G +ARQA ++VL+++ +L VV+ + +FFPLT
Sbjct: 3 MFNVIRKEFQYGQHQVVLETGRVARQA-NTVLITMGGVTVLVAVVAQPTAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASESETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ ++ DIA+++G S AL+I+ PF GP+G A+VG I+G+Y+LNP EQL +S LDL+VA
Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGGARVGLINGEYVLNPNLEQLAQSDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W VK++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGATESTWTAPVKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +K+ + E KI +AY I K R + + + + E++ +D+N + D
Sbjct: 242 DLRAKLKDAFEAKISEAYTIAVKHDRYAALDALQAEAVAQFVPEEDVDGIADDLNELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R + ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAYAGRMHILNAMNQ 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARPEISMHAPTFQVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++RV
Sbjct: 602 ETKAAAQAAIAKIQALTAEVEPGKIYPGKVIRIVEFGAFVNIMPGTDGLLHISQISNERV 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD L E Q V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDILAEGQDVKVQVADVDNRGRIKLTM 691
>gi|209966184|ref|YP_002299099.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum centenum
SW]
gi|226702682|sp|B6IVG3.1|PNP_RHOCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209959650|gb|ACJ00287.1| polyribonucleotide nucleotidyltransferase, putative [Rhodospirillum
centenum SW]
Length = 707
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/691 (49%), Positives = 483/691 (69%), Gaps = 4/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K +G K+ +E G++ARQA +V S DTV+LAT V+ K P +FFPLT
Sbjct: 1 MFKVFRKEMMWGGRKLVLETGKVARQADGAVWASYGDTVVLATAVAAKAPKPGVDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EKA+AAG+IPG FFKREG+P+E+E + SRLIDRPIRPLF +GY NE Q++V VLS
Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFADGYRNETQVIVTVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI +++ S AL+IS +PFLGP+G A+VGY DG+++LNPT EQ++ S LDL+VA
Sbjct: 121 DLENDPDIVAMVATSAALTISGIPFLGPIGAARVGYKDGQFVLNPTLEQVEASDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT + ++ VESE+K+LPED++L A++FGH + + I+ I +L + + + DK
Sbjct: 181 GTTEGVLMVESEAKELPEDVMLGAVMFGHREFQPVIDLIIDLAEMAAKDPMAIPAPAYDK 240
Query: 304 TLI-SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+ +++ + +R+AY + KQ R +++ + +
Sbjct: 241 DAVKTRMAALIGQDVRQAYTLTVKQERYAAIGAAKLKALETMVAEGTAP---EAVASVFK 297
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+LES I+R +++ G RID R DIRPI + G+LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 298 ELESDILRGSVIETGKRIDGRTTVDIRPIVSQVGVLPRAHGSALFTRGETQALVVATLGT 357
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
++DEQ +DAL GE+ +SFMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 358 NQDEQIVDALEGEYRESFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPLLPTK 417
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F Y+IR+VSEITESNGSSSMA+VCG L+++DAGVP+ VAGIAMGLIK+GEK +L
Sbjct: 418 ETFPYTIRVVSEITESNGSSSMATVCGSSLSMMDAGVPLPRPVAGIAMGLIKEGEKFAVL 477
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI IT +I++IAL +AK G +IL +M
Sbjct: 478 SDILGDEDHLGDMDFKVAGTEKGVTALQMDIKITSITEEIMKIALAQAKDGRVHILSEMN 537
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + +++ APR+ I I KIRDVIG GG IR + E+TG +IDI D+G + +A
Sbjct: 538 KALNTAREAVNQNAPRITVINIPKDKIRDVIGSGGKVIREIVEQTGAKIDIEDDGTVKVA 597
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + + + A + I+ + ++G++Y G V+++ DFGA + L +DGL+HIS++ ++R
Sbjct: 598 AVDGKASEAAIKWIKGIVAEPEVGEIYEGKVVKIMDFGAFVNFLGSRDGLVHISELKNER 657
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD +K+ V+VKVLG DDRG++KLSM
Sbjct: 658 VAKVTDVVKQGDAVKVKVLGFDDRGKVKLSM 688
>gi|359787085|ref|ZP_09290154.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. GFAJ-1]
gi|359295622|gb|EHK59886.1| polynucleotide phosphorylase/polyadenylase [Halomonas sp. GFAJ-1]
Length = 720
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/693 (49%), Positives = 488/693 (70%), Gaps = 5/693 (0%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N + K+F+YG +++E G IARQAT +V+V++++TV+L TVV+ K+ FFPL+V
Sbjct: 8 NPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDETVVLCTVVAKKEANPNQPFFPLSVH 67
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YA G+IPG FFKREG+P+E+ET+ SRLIDRPIRPLFP+G++NE+Q++ VLS +
Sbjct: 68 YQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVICTVLSTDR 127
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVAG 244
DPD+A+++G S ALSIS +PF GP+G A+VG+ + + Y LNPT E+L S LD++VAG
Sbjct: 128 NHDPDVAAMLGTSAALSISGVPFNGPIGCARVGFNEEQGYFLNPTVEELAASELDMVVAG 187
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T+KA++ VESE+++L ED +L A++FGH++M++A+ AI ELV G+ + +W P ++
Sbjct: 188 TDKAVLMVESEAQELLEDEMLGAVLFGHQEMQVAVTAIKELVAEAGKPRWDWQPAPENVA 247
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTID----INDINCI 360
L + + E K+ AY+I +K R + L E + +D+
Sbjct: 248 LKTAMAEAFEAKVGDAYRITDKMARQDALSALKDAAVEQLAAVEGEEAEGKFSKDDVKGA 307
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
LE +++R +++ RID R + +RP++I G+LP+THGS++FTRG+TQA+ +ATL
Sbjct: 308 FAGLEKRVVRSRVVKGEPRIDGRDNSTVRPLAIEVGVLPKTHGSAVFTRGETQAIAIATL 367
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
GT RD Q I++L GE D FMLHYN PP+ G+ G +G PKRREIGHGRLA+R + +LP
Sbjct: 368 GTLRDSQLIESLEGERKDRFMLHYNFPPYCVGEAGFMGGPKRREIGHGRLARRGIQAMLP 427
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+ + F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+KD +
Sbjct: 428 SEDVFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDEDGYA 487
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+L+DILGDED GDMDFKVAG+ G+TALQMDIKI GI +I++ AL +A IL +
Sbjct: 488 VLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMEKALQQAHDARISILAQ 547
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M + + + ++S+ AP + TIKI P KIRDVIGKGG+TIR + E+TG ID++D+G +
Sbjct: 548 MNDVISQSRTDVSENAPSMATIKIAPDKIRDVIGKGGATIRKICEDTGASIDLDDDGTVR 607
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I + + + + A + +T +IGK+Y G V+R+ DFGA + I+ G DGL+HISQI +
Sbjct: 608 IYAEDKAAAKRAIDTVLAITAEAEIGKLYNGKVVRIADFGAFVNIMPGTDGLVHISQIVA 667
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RVN + DFL E V VKVL ID+R R+KLS+
Sbjct: 668 ERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSI 700
>gi|49475022|ref|YP_033063.1| polynucleotide phosphorylase [Bartonella henselae str. Houston-1]
gi|81648398|sp|Q6G5F8.1|PNP_BARHE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49237827|emb|CAF27022.1| Polyribonucleotide nucleotidyltransferase [Bartonella henselae str.
Houston-1]
Length = 733
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/684 (50%), Positives = 493/684 (72%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ +++E G+IARQA +V+ + +T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +PSE ET+ISRLIDRPIRPLF +GY N+ Q++V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPSENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+YILNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPHIDEMSESKLDLVVAGTENAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT-LISKIIN 311
ESE+++LPEDI+L A++FGH+ ++ ++AI +L + + ++ P +D + L + ++
Sbjct: 190 ESEAQELPEDIMLGAVMFGHKGLQPILDAIIKLAEVAAKDPRDFVP--EDLSDLETAMLE 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKII 369
++E IRKAY I +KQ R + +I + + E+ ++ I + L++KI+
Sbjct: 248 MAEKDIRKAYTITDKQERYAALDALKTEIINKFMPETEEDCKFSVDQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLGT DEQ I
Sbjct: 308 RSNILDTKKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYI 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LP+ F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPSKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTANGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 AELSEFSPRIEVMNIAVDKIRDVIGTGGKVIREIVEQTGAKINIEDDGTIRIASADAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ +FGA + +DGL+HISQ++++RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGVIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTTERVTKTTDV 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|148651980|ref|YP_001279073.1| polynucleotide phosphorylase/polyadenylase [Psychrobacter sp.
PRwf-1]
gi|187611275|sp|A5WBT2.1|PNP_PSYWF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148571064|gb|ABQ93123.1| Polyribonucleotide nucleotidyltransferase [Psychrobacter sp.
PRwf-1]
Length = 704
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/693 (52%), Positives = 485/693 (69%), Gaps = 4/693 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN I + F+YG+ ++ IE G IARQA +SVLV + +L VV D NFFPLT
Sbjct: 3 MFNTISREFQYGNEQVVIETGRIARQA-NSVLVHMGGVSVLVAVVVKSDAKEGQNFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG++ KREG+P+E ET+ SRLIDRPIRPLFPEGY+NEIQI V+S
Sbjct: 62 VNYQEKMYAAGKIPGAYGKREGRPTEFETLTSRLIDRPIRPLFPEGYVNEIQITATVISS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DIA++IG S ALSIS+ PF GP+G A+VG+I+G+Y+LNP+ E+LK S LDL+VA
Sbjct: 122 DKKHYADIAAMIGASAALSISDAPFNGPIGGARVGFINGEYVLNPSIEELKSSDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ +L ED +L A+++GHE+ +I I+ I EL + VG +K ++ +
Sbjct: 182 GTKSAVLMVESEAAELSEDQMLGAVLYGHEQQQIVIDNIAELAKAVGTQKQDFVAPELNA 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI---DNENLTIDINDINCI 360
L K+ ++ +AY I +KQ R I +L ++E I I
Sbjct: 242 ELKEKVTTQFGEQVAEAYAISDKQARYEKLDEIKAAAIDALAGDPESEEFAEKEAQIKEI 301
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
DL+ + +R IL RID R ++ +R + I+ G+LP THGS+LFTRG+TQALV TL
Sbjct: 302 YNDLKYRTVRDAILSGKPRIDGRDLDTVRALDIQVGVLPYTHGSALFTRGETQALVTTTL 361
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
G SRD ID+L G D FMLHYN P ++ G+ GR GVPKRREIGHGRLA+R + +LP
Sbjct: 362 GNSRDVNLIDSLAGTIQDHFMLHYNFPHYSVGETGREGVPKRREIGHGRLARRGVQAMLP 421
Query: 481 NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
++++F Y IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G++
Sbjct: 422 DSDRFPYVIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGDRFA 481
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
+LSDILGDED GDMDFKVAGT +GITALQMDIKI GIT DI++ AL +A G +IL
Sbjct: 482 VLSDILGDEDHLGDMDFKVAGTKDGITALQMDIKIEGITSDIMEKALEQAHAGRIHILNA 541
Query: 601 MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT 660
M +P + E++ AP I+I+ KIRDVIGKGG+TIR LTE+TG IDI+D G I
Sbjct: 542 MNEVLPASRTEINAHAPNYAVIEINSDKIRDVIGKGGATIRQLTEDTGAVIDIDDNGTIR 601
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
I N + +EA R+IE +T V++GKVY G V R+ DFGA + +L G DGL+HISQI+
Sbjct: 602 IFGENKAATKEAIRQIEAITAEVEVGKVYKGTVARVVDFGAFVTVLPGTDGLVHISQIAD 661
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+RV ++D+L E Q++ V V +D+RGRIKL+M
Sbjct: 662 ERVESVSDYLSEGQQINVLVQDVDNRGRIKLTM 694
>gi|296114408|ref|ZP_06833062.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
hansenii ATCC 23769]
gi|295979169|gb|EFG85893.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
hansenii ATCC 23769]
Length = 710
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/695 (51%), Positives = 486/695 (69%), Gaps = 14/695 (2%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ ++G + +E G+IARQA +V+V+ DTV+L T V K +FFPLT
Sbjct: 1 MFDYFRTEIEWGGRPLILETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EKAYAAG+IPG FFKREG+PSE E + SRLIDRPIRPLFP+ + NE+Q+V VLS
Sbjct: 61 VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPDNFRNEVQVVATVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DP I ++IG S AL++S +PF GP+G +VGYIDGKY+LNPT Q K+S LDL+VA
Sbjct: 121 DMENDPAIVALIGCSAALTLSGVPFFGPVGACRVGYIDGKYVLNPTIAQTKESALDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD---PIV 300
GTE+ ++ VESE+ +L E ++L A+ FGHE + I+AI EL ++ K WD P
Sbjct: 181 GTEEGVLMVESEAAELSEKVMLGAVTFGHEAFQDVIDAIIELAEHAA--KAPWDLVEPSA 238
Query: 301 KDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNIS--KDIYSSLIDNENLTIDINDIN 358
++ L KI + I +AYQ + KQ+R +K ++ KD + +D +
Sbjct: 239 EEIKLRKKIEKLGRKAIAEAYQERVKQVR---YKKVAAAKDAILAKLD----PAEAEAAK 291
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
+L +LE+ ++R +L+ G RID R + IRPI GILPR HGS+LFTRG+TQALV+A
Sbjct: 292 PLLKELEANVVRSAVLETGHRIDGRDLKTIRPIVSEVGILPRAHGSALFTRGETQALVIA 351
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT +DEQ IDAL GE+ +FMLHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+
Sbjct: 352 TLGTGQDEQVIDALEGEYRTNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPL 411
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP + F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLIK+ E+
Sbjct: 412 LPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEEE 471
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+LSDILGDED GDMDFKVAGT NGITALQMDIKI IT +I++IAL +A+ G +IL
Sbjct: 472 FAVLSDILGDEDHLGDMDFKVAGTENGITALQMDIKITSITPEIMEIALDQARGGRMHIL 531
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
+M + + ++++S AP++ TI + KIRDVIG+GG IR + E +G +IDIND+G
Sbjct: 532 GEMSKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGT 591
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
I IA+ + ++A RI + +IGK+Y G V++ DFGA + L +DGL+HIS++
Sbjct: 592 IMIAASSDEQAEKAIERIRGIVAEPEIGKIYNGKVVKTADFGAFVNFLGPRDGLVHISEL 651
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ RV TD +K+ +V+VKVLG DDRG++KLSM
Sbjct: 652 AQGRVAKTTDVVKQGDEVKVKVLGFDDRGKVKLSM 686
>gi|399521911|ref|ZP_10762576.1| polyribonucleotide nucleotidyltransferase [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399109946|emb|CCH39136.1| polyribonucleotide nucleotidyltransferase [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 701
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/691 (50%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKSADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+K+L ED +L A++F HE+ ++ I A+ EL G+ +W P ++
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHEEFQVVIQAVAELAAEAGKPTWDWQPKPEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L++ I I +AY I KQ R + + + E ++
Sbjct: 241 TALLNAIRGEFGEAISQAYTITVKQDRYARLGELRDQVVAKFSGEEGQPT-AGEVKEAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +R ++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LP+
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+ +GEK +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVLEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMIAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S +R
Sbjct: 600 GETKDAAEAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD L+E Q+V+V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDVLQEGQEVKVLVLDVDNRGRIKLSI 690
>gi|419954441|ref|ZP_14470579.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
TS44]
gi|387968774|gb|EIK53061.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
TS44]
Length = 701
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/691 (50%), Positives = 481/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L V K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVAVLVAVTGAKTADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVIST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL++S +PF GP+G A+V + + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+++L ED +L A++F HE+ + + A+ EL G+ + NW +
Sbjct: 181 AGTKDAVLMVESEARELTEDQMLGAVLFAHEEFQAVVKAVEELAAEAGKPRWNWTAPQAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I + I +AY I KQ R + KD + E ++
Sbjct: 241 TALLDAIRSEFGDAISQAYTITIKQDRYARLGEL-KDQIVAKFSGEEGQPSAGEVKDAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +R ++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LPN
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAGMLPNA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRGICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS +R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 660 IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 690
>gi|333901763|ref|YP_004475636.1| polyribonucleotide nucleotidyltransferase [Pseudomonas fulva 12-X]
gi|333117028|gb|AEF23542.1| Polyribonucleotide nucleotidyltransferase [Pseudomonas fulva 12-X]
Length = 701
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/691 (51%), Positives = 477/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++ D +L TVV K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKSADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V Y + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAYHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+K+L ED +L A++F H++ + I A+ EL G+ + +W +
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVTELAAEAGKPRWDWQAAAAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+L+ I I AY I KQ R + + + E ++
Sbjct: 241 TSLLDAIRAEFGAAISDAYTIIIKQDRYARLGELRDQVVAKFSGEEGQP-SAGEVKDAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +R ++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LP+
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DEFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I++IAL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTANGVTALQMDIKIQGITEEIMEIALNQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP ++ +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S R
Sbjct: 600 GETKEAADAAKQRVLAITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDILKEGQEVEVLVLDVDNRGRIKLSI 690
>gi|153008079|ref|YP_001369294.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum anthropi
ATCC 49188]
gi|187610317|sp|A6WWW1.1|PNP_OCHA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151559967|gb|ABS13465.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum anthropi
ATCC 49188]
Length = 713
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/695 (50%), Positives = 492/695 (70%), Gaps = 9/695 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN ++G +++E G+IARQA +VL + +TV+LATVVS K+P +FFPLT
Sbjct: 1 MFNTHKVEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF EGY N+ Q+V+ V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVEGYKNDTQVVLTVVQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PD+ S++ S AL+IS +PF+GP+G A+VGYI+G+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENNPDVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+++L E+++L A++FG + + I+AI +L + ++ ++ P +D
Sbjct: 181 GTADAVLMVESEAQELSEEVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFQP--EDL 238
Query: 304 T-LISKIINISEHKIRKAYQIKNKQIR----DLTFKNISKDIYSSLIDNENLTIDINDIN 358
+ L +K++ + E+ +R AY+I KQ R D + ++ + +
Sbjct: 239 SDLEAKMLAVVENDLRDAYKITEKQARYVAVDAAKAKAKAHFFPEGVEEPEFSAE--KFA 296
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
+ L++KI+R ILD G RID R + +R I G+LPRTHGS+LFTRG+TQA+VVA
Sbjct: 297 TVFKHLQAKIVRWNILDTGSRIDGRDLKTVRAIVSEVGLLPRTHGSALFTRGETQAIVVA 356
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT DEQ IDAL G + +SFMLHYN PP++ G+ GR+G P RRE+GHG+LA RA+ P+
Sbjct: 357 TLGTGEDEQMIDALTGTYKESFMLHYNFPPYSVGETGRMGSPGRREVGHGKLAWRAIHPM 416
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP ++F Y+IR VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+
Sbjct: 417 LPAADQFPYTIRSVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGER 476
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+LSDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+++AL +AK G +IL
Sbjct: 477 FAVLSDILGDEDHLGDMDFKVAGTDNGITALQMDIKIDGITEEIMKVALEQAKGGRVHIL 536
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
+M + + EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G
Sbjct: 537 GEMAKALSTSREELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGT 596
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
+ IAS N + AK+ I + ++G++Y G V++ DFGA + +DGL+HISQ+
Sbjct: 597 VKIASSNGKEIEAAKKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQL 656
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+S RV TD +KE QKV VK++G D+RG+++LSM
Sbjct: 657 ASDRVAKTTDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|78485473|ref|YP_391398.1| polynucleotide phosphorylase/polyadenylase [Thiomicrospira
crunogena XCL-2]
gi|123755229|sp|Q31GJ9.1|PNP_THICR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78363759|gb|ABB41724.1| Polyribonucleotide nucleotidyltransferase [Thiomicrospira crunogena
XCL-2]
Length = 694
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/691 (49%), Positives = 494/691 (71%), Gaps = 2/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
+K IKSF+YG +++ E GEIARQA +V+V++ DT +L TVV K+ + +FFPLTV
Sbjct: 1 MSKFIKSFQYGKHEVRFETGEIARQADGAVMVAMGDTQLLVTVVGAKNAKAGQDFFPLTV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
Y EKAYAAGRIPG F KREG+PSE+ET+ SRLIDRPIRPLFP+G++NE+Q++ V+S++
Sbjct: 61 QYQEKAYAAGRIPGGFLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVVSLD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
P+I ++ +++G S ALSIS +PF GP+G A VGY D YILNP++++L++S L+L VAG
Sbjct: 121 PEIGTEVPAMLGTSAALSISGIPFDGPIGAAVVGYKDNDYILNPSSQELQESDLELSVAG 180
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
T A++ VESE+ +L E+I+L A++FGHE+M++AI+AI EL VG+ NW+ +D
Sbjct: 181 TSDAVLMVESEASELSEEIMLGAVMFGHEQMQVAIDAIKELKAEVGKPAWNWEAAEEDID 240
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN--LTIDINDINCILY 362
L +K+ + I AY I +K R + +L E D DI ++
Sbjct: 241 LKTKVFDAIRSDIEAAYDIADKMDRYAAIDAAKTKVMEALAATEENPEGYDAGDIEKMVG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
L+ +I+R +I+ RID R IR I + GILP+ HGS+LFTRG+TQA+VV TLGT
Sbjct: 301 KLQKEIVRGRIIAGEPRIDGRDTQTIRSIDCQVGILPKVHGSALFTRGETQAIVVTTLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+D + +D L G + D FMLHYN PP++ G+ GR+G P RREIGHG LA+R + +LP
Sbjct: 361 EKDAKMVDDLTGSYNDRFMLHYNFPPYSVGECGRVGSPGRREIGHGMLARRGVAALLPTA 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMA+VCG ++L+ AGVP++ +AGIAMGL+K+ +L
Sbjct: 421 DEFPYTIRVVSEITESNGSSSMATVCGTSMSLMHAGVPLAAPIAGIAMGLVKEESGFAVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+ IAL +AK+G +IL++M+
Sbjct: 481 SDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITGITQEIMHIALKQAKEGRLHILKEME 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ +++ APR T+K+ P K+R++IGKGG+TIR++TEETG I+I+D+G + IA
Sbjct: 541 KAIGSSNQDVATTAPRFFTVKVKPEKVREIIGKGGATIRSITEETGVTIEIDDDGNVKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S AK RI ++T +IGKVY V+++ DFGA + + G++GL+H+SQI+ +R
Sbjct: 601 AVDDESANAAKARIAEITAEPEIGKVYDAKVVKIVDFGAFVSYMPGREGLVHVSQIADER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V + ++LKE Q+++V++ +D +GR+KLS+
Sbjct: 661 VEDVNEYLKEGQEIKVRLTDVDKQGRVKLSI 691
>gi|299771757|ref|YP_003733783.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
oleivorans DR1]
gi|298701845|gb|ADI92410.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
oleivorans DR1]
Length = 697
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/690 (51%), Positives = 482/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA ++VL+++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQA-NTVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+G A+VG I+G+Y+LNP EQLK+S LDL+VA
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W K++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPSKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ ++ E KI +AY I KQ R + + + + + T +++N + D
Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTM 691
>gi|407777927|ref|ZP_11125194.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor
pacificus pht-3B]
gi|407300323|gb|EKF19448.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor
pacificus pht-3B]
Length = 717
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/686 (50%), Positives = 494/686 (72%), Gaps = 9/686 (1%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++G + +E G+IARQA +VL + +TV+LATVVS K+P ++FFPLTV+Y EK +A
Sbjct: 10 EWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGFDFFPLTVNYQEKTFA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
AG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLF +GY N+ Q+V+ VL + + DPDI
Sbjct: 70 AGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFVDGYKNDTQVVLTVLQHDLENDPDIV 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
+++G S AL++S +PF+GP+G A+VGYI G+YILNP +++++S LDL+VAGT A++ V
Sbjct: 130 AMVGASAALTLSGVPFMGPIGAARVGYIGGEYILNPHLDEMEESKLDLVVAGTGDAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW-DPIVKDKTLISKIIN 311
ESE+++L ED++L A++FGH+ + I+AI +L + ++ ++ P + L ++
Sbjct: 190 ESEAQELAEDVMLGAVMFGHKGFQPVIDAIIKLAEAAAKEPRDFTSPDYSE--LEGAMLK 247
Query: 312 ISEHKIRKAYQIKNKQIR----DLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
+ E +R AY+I +KQ R D + + + + T + +N + L++K
Sbjct: 248 VVEADLRDAYKITDKQQRYDAVDAAKAKVKAEFLPEGEEEQKWTSE--QVNAVFKTLQAK 305
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
I+R ILD LRID R ++ +R I G+LPRTHGS++FTRG+TQALVVATLGT DEQ
Sbjct: 306 IVRWNILDTSLRIDGRDLSTVRSIVSEVGVLPRTHGSAVFTRGETQALVVATLGTGEDEQ 365
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDAL G + ++F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP ++F Y
Sbjct: 366 FIDALTGTYKEAFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAADQFPY 425
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
++R+VSE+TESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLIK+ E+ +LSDILG
Sbjct: 426 TLRVVSEVTESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEERFAVLSDILG 485
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT GIT+LQMDIKI GIT +I+QIAL +AK G +IL +M + +
Sbjct: 486 DEDHLGDMDFKVAGTDAGITSLQMDIKIHGITEEIMQIALDQAKGGRLHILGEMGKALSE 545
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G + IAS N+
Sbjct: 546 SRGELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTVKIASSNAK 605
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ AK+ I +T ++G++Y G V++ DFGA + KDGL+HISQ++S+RV T
Sbjct: 606 EIEAAKKWIHSITAEPEVGEIYEGTVVKTADFGAFVNFFGPKDGLVHISQLASERVQKTT 665
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D +KE KV VK++G D+RG+++LSM
Sbjct: 666 DVVKEGDKVFVKLMGFDERGKVRLSM 691
>gi|262280783|ref|ZP_06058566.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
calcoaceticus RUH2202]
gi|262257683|gb|EEY76418.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
calcoaceticus RUH2202]
Length = 697
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/690 (51%), Positives = 482/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F+YG + + +E G +ARQA ++VLV++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQYGQHTVVLETGRVARQA-NTVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEG+ NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA++IG S A+SI+ +PF GP+ A+VG I+G+YILNPT EQLK+S LDL+VA
Sbjct: 122 DKTMDADIAAMIGASAAMSIAAVPFRGPIAGARVGLINGEYILNPTHEQLKESDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IA+ AI E G + W K++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAAGAVESTWVAPSKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ ++ E KI +AY I KQ R + + + + + T +++N + D
Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSENGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARPEISAHAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTM 691
>gi|451940181|ref|YP_007460819.1| polynucleotide phosphorylase/polyadenylase [Bartonella australis
Aust/NH1]
gi|451899568|gb|AGF74031.1| polynucleotide phosphorylase/polyadenylase [Bartonella australis
Aust/NH1]
Length = 733
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/684 (51%), Positives = 490/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ ++IE G+IARQA +V+ + +TV+LATVVS K +FFPLTV+Y EKAYA
Sbjct: 10 EWAGRPLTIETGKIARQADGAVIATYGETVVLATVVSAKSAKPDQDFFPLTVNYQEKAYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
G+IPG +FKREG+P+E ET+ISRLIDRPIRPLF +GY N+ QI+V V+ + + +PDI
Sbjct: 70 VGKIPGGYFKREGRPNENETLISRLIDRPIRPLFVDGYKNDTQIIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+YILNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPNIDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK-IIN 311
ESE+++LPED++L A+IFG + + ++AI +L + ++ ++ P +D + + K ++
Sbjct: 190 ESEAQELPEDVMLGAVIFGQKGFQPVLDAIIKLAEVAAKEPRDFTP--EDLSDLEKTMLK 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID--NENLTIDINDINCILYDLESKII 369
++E +RKAY I +KQ R I +I + EN ++ I + +L++ I+
Sbjct: 248 MAEQDLRKAYAITDKQERYAAIDAIKTEIINEFRPKMEENCDFSVDQIATVFKNLQAMIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R+ ILD G RID R ++ +RPI GI PRTHGS+LFTRG+TQALVV TLGTS DEQ I
Sbjct: 308 RQNILDTGKRIDGRNLSTVRPIKSEVGIFPRTHGSALFTRGETQALVVTTLGTSEDEQYI 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GRIG P RREIGHG+LA RA+ P+LP F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPMLPTRESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ +AGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RTVSEITESNGSSSMATVCGTSLALMDAGVPLARPIAGIAMGLIKEGERFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKDGRIHILGEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++
Sbjct: 548 GELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASTDAKII 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G VY G V++ +FGA + +DGL+HISQ++S+RV D
Sbjct: 608 EAAKRWIHSIVDEPEVGAVYQGTVVKTAEFGAFVNFFGSRDGLVHISQLTSERVAKTIDV 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+I+LSM
Sbjct: 668 VKEGDKVWVKLIGFDERGKIRLSM 691
>gi|347735476|ref|ZP_08868338.1| polynucleotide phosphorylase/polyadenylase [Azospirillum amazonense
Y2]
gi|346921296|gb|EGY02070.1| polynucleotide phosphorylase/polyadenylase [Azospirillum amazonense
Y2]
Length = 709
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/691 (50%), Positives = 483/691 (69%), Gaps = 3/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F K ++G K+ +E G++ARQA +V+ + DTV+L T V K +FFPLT
Sbjct: 1 MFKVFRKEMEWGGRKLVLETGKVARQADGAVIATYGDTVVLCTAVGAKSVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EKA+AAG+IPG FFKREG+P+E+E + SRLIDRPIRPLF +G+ NE+Q+V VLS
Sbjct: 61 VNYQEKAFAAGKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFVDGFRNEVQVVCTVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI ++IG S AL++S LPFLGP+G A+VGY DG++ILNPT EQ++ + LDL+VA
Sbjct: 121 DLENDPDIVAMIGASAALTLSGLPFLGPIGGARVGYKDGEFILNPTLEQVETTDLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT++ ++ VESE+K+L E+I+L A++FGH + IN I +L + + + P DK
Sbjct: 181 GTQEGVLMVESEAKELSEEIMLKAVMFGHTAFQSVINLIIDLAEQAAKDPWDLPPPAYDK 240
Query: 304 T-LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ + IR AY + KQ R K +L + T + +
Sbjct: 241 AALKAKLNELVGADIRAAYTLTVKQERYEAISTAKKKAVEALTADGAHTAEA--VGSTFK 298
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE+ ++R +L+ G RID R DIRPI G+LPR HGSSLFTRG+TQALVVATLGT
Sbjct: 299 DLEADVLRGTVLETGKRIDGRTTVDIRPIVAEVGVLPRAHGSSLFTRGETQALVVATLGT 358
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
++DEQ +DAL GE+ ++FMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP+
Sbjct: 359 AQDEQIVDALEGEYRENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVHPLLPSK 418
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F Y++RLVSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLIK+ V +L
Sbjct: 419 EAFPYTLRLVSEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKEDTGVAVL 478
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI IT DI+++AL +AK G +IL +M
Sbjct: 479 SDILGDEDHLGDMDFKVAGTEAGVTALQMDIKITSITEDIMKVALAQAKDGRLHILGEMA 538
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++ +++ APR+ I I KIRDVIG GG IR + E+TG +IDI D+G + +A
Sbjct: 539 KAIGGARDAVNQNAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDIEDDGTVKVA 598
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ +S + A + I+ + ++G++Y G V+++ DFGA + L +DGL+HIS++S +R
Sbjct: 599 AVDSKASDAAIKWIKGIVAEPELGEIYVGKVVKVMDFGAFVNFLGARDGLVHISELSPQR 658
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD + + +V+VKVLG DDRG++KLSM
Sbjct: 659 VAKVTDVVNQGDEVKVKVLGFDDRGKVKLSM 689
>gi|330991187|ref|ZP_08315140.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
SXCC-1]
gi|329761773|gb|EGG78264.1| Polyribonucleotide nucleotidyltransferase [Gluconacetobacter sp.
SXCC-1]
Length = 761
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/694 (50%), Positives = 486/694 (70%), Gaps = 10/694 (1%)
Query: 63 FLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
++FN K ++G + +E G+IARQA +V+V+ DTV+L T V K +FFPL
Sbjct: 49 WMFNYFRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPL 108
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y EKAYAAG+IPG FFKREG+PSE E + SRLIDRPIRPLFPE + NE+Q+V VLS
Sbjct: 109 TVNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLS 168
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+ + DP + ++IG S AL++S +PF GP+G A+VGY +GKY+LNPT QLK+S LDL+V
Sbjct: 169 HDMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLVV 228
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD---PI 299
AGT + ++ VESE+ +L ED++L A+ FGHE + I+ I +L ++ K WD P
Sbjct: 229 AGTSEGVLMVESEAVELSEDVMLGAVTFGHEAFQPVIDLIIDLAESAA--KAPWDLAEPT 286
Query: 300 VKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINC 359
++ L K+ I +AY+ + KQ+R + I + + + D +
Sbjct: 287 AEEIKLRKKVDKAGRALIAEAYKERAKQVRYKKVAAAREAILAKIGE-----ADADAAKP 341
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
++ DLE+ ++R ++LD G RID R + IRPI GILPR HGS+LFTRG+TQALVVAT
Sbjct: 342 MIKDLEADVVRTEVLDTGYRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVAT 401
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGT +DEQ +DAL GE+ ++FMLHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+L
Sbjct: 402 LGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPLL 461
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P + F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLIK+ +
Sbjct: 462 PGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEDDF 521
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+LSDILGDED GDMDFKVAGT G+TALQMDIKI IT +I++IAL +A++G +IL
Sbjct: 522 AVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARQGRLHILG 581
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
+M + + ++++S AP++ TI + KIRDVIG+GG IR + E +G +IDIND+G I
Sbjct: 582 EMAKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTI 641
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
IA+ + ++A RI +T ++G +Y G V++ DFGA + L +DGL+HIS+++
Sbjct: 642 MIAASSDDQAEKAIERIRGITAEPEVGHIYNGKVVKTADFGAFVNFLGPRDGLVHISELA 701
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV+ TD +K+ +V+VKVLG DDRG++KLSM
Sbjct: 702 EGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSM 735
>gi|254516613|ref|ZP_05128672.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR5-3]
gi|219675036|gb|EED31403.1| polyribonucleotide nucleotidyltransferase [gamma proteobacterium
NOR5-3]
Length = 704
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/690 (49%), Positives = 480/690 (69%), Gaps = 3/690 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTV 124
N + K+F+YG +++E G IARQA+ +VLV++E+T +L TVV+ K +FFPL V
Sbjct: 1 MNPVTKTFQYGGQTVTLETGRIARQASGAVLVTVENTSVLVTVVAEKTAREGRDFFPLAV 60
Query: 125 DYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVN 184
YIEKAY+ G+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFP G++NE+Q++ V+S +
Sbjct: 61 HYIEKAYSVGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPNGFMNEVQVICTVMSAD 120
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVA 243
IDPDI ++IG S AL+IS PF GP+G A+VG+ D + YILNPT +QL S L+++VA
Sbjct: 121 KHIDPDIPAMIGTSAALAISGCPFNGPIGAARVGFNDAEGYILNPTYDQLPGSKLEMVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VES++ QL ED +L A++F H++M++ I A+ EL G+ NW+ D+
Sbjct: 181 GTEDAVLMVESQADQLTEDQMLGAVLFAHQEMQVVIKAVQELAAEAGKPSWNWEAPAIDE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ + + + + +AY+I +K R I + + L + D+ +
Sbjct: 241 ALLGAVEGMVKDDLGEAYRITDKSERYARVGEIREACVAELATEGGPSADL--VKEYFKK 298
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++RK+I+ RID R +R I+ +L + HGS+LFTRG+TQA+ TLG++
Sbjct: 299 VEKSMVRKRIIAGEPRIDGRDTRTVRQIACEVDVLAKAHGSALFTRGETQAIGAVTLGST 358
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q IDAL GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R L VLP+
Sbjct: 359 RDAQIIDALEGERRDPFMLHYNFPPYSVGEAGRVGFTSRREIGHGRLARRGLAAVLPDLE 418
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y+IR+VSEITESNGSSSMASVC G LA++ AGVP+ VAGIAMGL+K+G + +L+
Sbjct: 419 EFPYTIRVVSEITESNGSSSMASVCVGSLAMMTAGVPLKAPVAGIAMGLVKEGNQFAVLT 478
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT NG+TALQMDIKI GIT I++IAL +A + +IL +M
Sbjct: 479 DILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEQIMEIALEQAMQARLHILGQMNA 538
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + S+ AP ++T+K+D KIRD+IGKGG+ IR++TE +G +DI D+G + +
Sbjct: 539 VLAAPRTVTSENAPSMVTLKVDSDKIRDIIGKGGAMIRSITEHSGATVDIEDDGTVRVFG 598
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ S +A IE++T ++G +YTG V R+ DFGA + IL GKDGLLHISQI+++RV
Sbjct: 599 QDQASRDKAVAMIEEITAEAEVGAIYTGKVERIVDFGAFVNILPGKDGLLHISQIANERV 658
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L E Q+VRVKVL +D RGRIKLS+
Sbjct: 659 ENVSDHLSEGQEVRVKVLDVDQRGRIKLSI 688
>gi|395791955|ref|ZP_10471394.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis Pm136co]
gi|423714006|ref|ZP_17688265.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395421153|gb|EJF87409.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395432874|gb|EJF98848.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis Pm136co]
Length = 711
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/684 (50%), Positives = 492/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ ++IE G+IARQA +V+ + +T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKTPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +P+E ET++SRLIDRPIRPLF +GY N+ Q++V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPTENETLVSRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+Y+LNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK-IIN 311
ESE+ +LPEDI+L A++FGH+ ++ ++AI +L + + ++ P +D + + K ++
Sbjct: 190 ESEAHELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVP--EDLSDLEKAMLE 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKII 369
++E IRKAY I +KQ R + ++ + + ++E+ + I + L++KI+
Sbjct: 248 MAEQDIRKAYTITDKQERYAAIDALKTEVINKFMPEEDEDCKFSTDQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI ILPRTHGS+LFTRG+TQA+VVATLGT DEQ +
Sbjct: 308 RWNILDTEKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYV 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RAL P+LP F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPTKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK+G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALDQAKEGRIHILNEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 AELSEFSPRIEVMNIPVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASADAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ +FGA + +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGAIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLASERVTKTTDV 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|319898331|ref|YP_004158424.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
73]
gi|319402295|emb|CBI75834.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
73]
Length = 733
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/684 (51%), Positives = 491/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ + +E G+IARQA +++ + +TV+LATVVS K P NFFPLTV+Y EK YA
Sbjct: 10 EWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEKNYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
G+IPG +FKRE +P+E ET+ISRLIDRPIRPLF EGY N+ Q++V V+ + + +PDI
Sbjct: 70 VGKIPGGYFKRENRPNESETLISRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
+II S AL++S +PF+GP+ A++GY +G+YILNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVAGTENAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK-IIN 311
ESE+ +LPE+++LNAI+FG + + INAI +L + ++ ++ P ++ +++ K ++
Sbjct: 190 ESEAHELPENVMLNAIMFGQKSFQPVINAIIKLAEVAAKEPRDFIP--ENLSVLEKNMLK 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLID--NENLTIDINDINCILYDLESKII 369
+ E ++ AY I +KQ R + +++ + + EN + + I + L++KI+
Sbjct: 248 MVEQDLKDAYTITDKQKRHTAIDVLKEEVINKFMQKTEENCEFNTDQIATVFKHLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R+ ILD G RID R +D+R I GILPRTHGS+LFTRG+TQALVV TLGT DEQ I
Sbjct: 308 RQNILDTGKRIDGRNPSDVRAIQSEVGILPRTHGSALFTRGETQALVVTTLGTGEDEQYI 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+IGRIG P RREIGHG+LA RA+ P+LP F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GEK ILSDILGDE
Sbjct: 428 RTVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEKFAILSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGIT+LQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
+ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS + +
Sbjct: 548 SELSEFSPRIEMMNITVDKIRDVIGSGGKVIREIVEKTGAKINIEDDGTIKIASSDLKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AK I + + +IG +Y G V+++ +FGA + +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKHWILSIVDEPEIGAIYQGTVVKIAEFGAFVNFFGSRDGLVHISQLASERVAKTTDI 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+I+LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKIRLSM 691
>gi|255319690|ref|ZP_05360898.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens SK82]
gi|262380027|ref|ZP_06073182.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens SH164]
gi|255303219|gb|EET82428.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens SK82]
gi|262298221|gb|EEY86135.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens SH164]
Length = 699
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/690 (51%), Positives = 480/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA +SVL+++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQA-NSVLITMGGVSVLVAVVAQPTAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+ A+VG I+G+YILNP EQLK+S LDL+VA
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIAGARVGLINGEYILNPNHEQLKESDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W K+
Sbjct: 182 GTETAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGATESTWVAPTKND 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ ++ E KI +AY I KQ R + + + + + T +++N + +
Sbjct: 242 ALLEQLKTAFEAKISEAYTIAVKQERYAALDALHAEAIAQFVPESDETGIADEVNELFEE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R + ++ G+L R HGS+LFTRG+TQALV ATLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPVD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y +R+VS+ITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVLRVVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFTGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARPEISMHAPTFAVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 602 ETKAAANAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTM 691
>gi|395782581|ref|ZP_10462967.1| polyribonucleotide nucleotidyltransferase [Bartonella
rattimassiliensis 15908]
gi|395417318|gb|EJF83657.1| polyribonucleotide nucleotidyltransferase [Bartonella
rattimassiliensis 15908]
Length = 731
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/684 (50%), Positives = 491/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ +++E G+IARQA +V+ + +T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +PSE ET++SRLIDRPIRPLF EGY N+ QI+V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQIIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+Y+LNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIIN- 311
ESE+++LPED++L A++FGH+ ++ ++AI +L + + ++ P +D + + K +
Sbjct: 190 ESEAQELPEDVMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFIP--EDLSNLEKAMQE 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKII 369
++E IR+AY I +KQ R + +I + + E+ ++ I + L++KI+
Sbjct: 248 MAEEDIRRAYTITDKQERYAAIDALKTEIINKFMPETEEDCKFSVDQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI ILPRTHGS+LFTRG+TQA+VVATLGTS DEQ I
Sbjct: 308 RGSILDTQKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTSEDEQYI 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
DAL G + ++F+LHYN PPF+ G+ GR+ P RREIGHG+LA RA+ P+LP F Y+I
Sbjct: 368 DALTGLYKETFLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPMLPTKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKSGRIHILNEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
+ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 SELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASADAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ +FGA I +DGL+HISQ++++RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGAIYQGTVVKTAEFGAFINFFGSRDGLVHISQLATERVTKTTDI 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|421856679|ref|ZP_16289041.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|403187883|dbj|GAB75242.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 699
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/690 (51%), Positives = 480/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA +SVL+++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQA-NSVLITMGGVSVLVAVVAQPTAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+ A+VG I+G+YILNP EQLK+S LDL+VA
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIAGARVGLINGEYILNPNHEQLKESDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W K+
Sbjct: 182 GTETAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGATESTWVAPTKND 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ ++ E KI +AY I KQ R + + + + + T +++N + +
Sbjct: 242 ALLEQLKTAFEAKISEAYTIAVKQERYAALDALHAEAIAQFVPENDETGIADEVNELFEE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R + ++ G+L R HGS+LFTRG+TQALV ATLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPVD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y +R+VS+ITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVLRVVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFTGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARPEISMHAPTFAVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 602 ETKAAANAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTM 691
>gi|335032810|ref|ZP_08526182.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium sp. ATCC
31749]
gi|333795486|gb|EGL66811.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium sp. ATCC
31749]
Length = 713
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/692 (48%), Positives = 494/692 (71%), Gaps = 4/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK ++ + +E G++ARQA +V+ + +T++LATVVS K P +FFPLT
Sbjct: 1 MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE+ET++SRLIDRPIRPLFPEGY N+ Q+VV V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPD+ S++ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT+ A++ VESE+K+L ED++L A++FGH + I+AI +L + ++ ++P +D
Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEP--EDF 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN-LTIDINDINCIL 361
L ++++ ++E ++R AY+I K R + + + + E +I +
Sbjct: 239 SALENEMLGLAETELRTAYKITEKAARYAAVDAVKAKVKAHFLPEEGEAKYSPEEIGAVF 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
L++KI+R +LD RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLG
Sbjct: 299 KHLQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T DEQ +D+L G + + F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 TGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPT 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLI +GE+ +
Sbjct: 419 AEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT +GIT+LQMDIKI GIT +I++IAL +A+ G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + +L +FAPR+ + I KIR+VIG GG IR + E+TG +I+I D+G + I
Sbjct: 539 ANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS + + A++ I + ++G++Y G V++ DFGA + +DGL+HISQ++S+
Sbjct: 599 ASASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +D +KE KV VK++G D+RG+++LSM
Sbjct: 659 RVAKTSDVVKEGDKVWVKLMGFDERGKVRLSM 690
>gi|421464691|ref|ZP_15913381.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens WC-A-157]
gi|400205444|gb|EJO36425.1| polyribonucleotide nucleotidyltransferase [Acinetobacter
radioresistens WC-A-157]
Length = 699
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/690 (51%), Positives = 480/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA +SVL+++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQA-NSVLITMGGVSVLVAVVAQPTAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+ A+VG I+G+YILNP EQLK+S LDL+VA
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIAGARVGLINGEYILNPNHEQLKESDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W K+
Sbjct: 182 GTETAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGATESTWVAPTKND 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ ++ E KI +AY I KQ R + + + + + T +++N + +
Sbjct: 242 ALLEQLKTAFEAKISEAYTIAVKQERYAALDALHAEAIAQFVPESDETGIADEVNELFEE 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R + ++ G+L R HGS+LFTRG+TQALV ATLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLERAHGSALFTRGETQALVTATLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPVD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y +R+VS+ITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVLRVVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFTGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARPEISMHAPTFAVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 602 ETKAAANAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTM 691
>gi|227824076|ref|YP_002828049.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium fredii
NGR234]
gi|254782732|sp|C3MC71.1|PNP_RHISN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|227343078|gb|ACP27296.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
NGR234]
Length = 717
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/683 (49%), Positives = 485/683 (71%), Gaps = 3/683 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ + +E G+IARQA +VL + +TV+LATVVS K P +FFPLTV+Y EK YA
Sbjct: 10 EWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
AG+IPG +FKREG+PSE ET++SRLIDRPIRPLFP+GY N+ Q++V V+ + + +PD+
Sbjct: 70 AGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIVTVMQHDLENNPDVV 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
S++ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++ +S LDL+VAGT++A++ V
Sbjct: 130 SMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTQEAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINI 312
ESE+K+LPED++L A++FG + + I+AI +L + ++ +DP L + ++ I
Sbjct: 190 ESEAKELPEDVMLGAVVFGQQGFQPVIDAIIKLAEVAAKEPREFDP-EDHSALENAMLAI 248
Query: 313 SEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILYDLESKIIR 370
+E ++R AY+I K R + + + EN +I + L++KI+R
Sbjct: 249 AEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGIENPAHTAEEIGSVFKHLQAKIVR 308
Query: 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKID 430
ILD RID R + +RPI G+LPRTHGS+LFTRG+TQA+VVATLGT DEQ +D
Sbjct: 309 WNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVD 368
Query: 431 ALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIR 490
+L G + + FMLHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LP +F Y++R
Sbjct: 369 SLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLR 428
Query: 491 LVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDED 550
+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLIK+ E+ +LSDILGDED
Sbjct: 429 VVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFAVLSDILGDED 488
Query: 551 RCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKN 610
GDMDFKVAGT GIT+LQMDIKI GIT +I+ IAL +AK G +IL +M + + +
Sbjct: 489 HLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGIALNQAKGGRLHILGEMAKAISESRG 548
Query: 611 ELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQ 670
+L +FAPR+ + I KIR+VIG GG IR + E+TG +I+I D+G + IAS + +
Sbjct: 549 QLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIASSSGKEIE 608
Query: 671 EAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFL 730
A++ I + ++G++Y G V++ DFGA + +DGL+HISQ++S+RV TD +
Sbjct: 609 AARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTTDVV 668
Query: 731 KENQKVRVKVLGIDDRGRIKLSM 753
KE KV VK++G D+RG+++LSM
Sbjct: 669 KEGDKVWVKLMGFDERGKVRLSM 691
>gi|418292352|ref|ZP_12904295.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
ATCC 14405 = CCUG 16156]
gi|379063778|gb|EHY76521.1| polynucleotide phosphorylase/polyadenylase [Pseudomonas stutzeri
ATCC 14405 = CCUG 16156]
Length = 701
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/691 (50%), Positives = 484/691 (70%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L V K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVAVTGAKTADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL+IS +PF GP+G A+V + + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+K+L ED +L A++F H++ + I A+ EL + + +W P ++
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVTELAAEAAKPRWDWQPKAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+L+ I + I +AY I KQ R + KD + E +++
Sbjct: 241 TSLLDAIRSEFGEAISQAYTIIIKQDRYARLGEL-KDQVVAKFSGEEGQPSASEVKEAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +R ++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R++ +LP+
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRSVAAMLPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP +I +KID KIRDVIGKGG+TIR++ EET IDI D+G I I
Sbjct: 540 QVISQSRSELSANAPTMIAMKIDQDKIRDVIGKGGATIRSICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + A++R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HIS +S +R
Sbjct: 600 GETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 660 VEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 690
>gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica
subsp. indica ATCC 9039]
gi|257096681|sp|B2ICY4.1|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 715
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/692 (50%), Positives = 489/692 (70%), Gaps = 4/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F + ++ K+ +E G+IARQA ++ + +T +LATVVS K +FFPLT
Sbjct: 3 MFEIHREEIEWAGRKLVLETGKIARQADGAIFATYGETTVLATVVSAKSVKPGVDFFPLT 62
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EKA+AAGRIPG +FKREG+PSERET++SRLIDRPIRPLFPEGY NE Q++V VL+
Sbjct: 63 VNYQEKAFAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPEGYRNETQVIVTVLAH 122
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI S++ S AL++S +PF+GP+G A+V Y++G+Y +NPT +++K + LDL+VA
Sbjct: 123 DLENDPDILSMVASSAALTLSGVPFMGPVGAARVAYVNGQYKINPTLDEVKDTALDLVVA 182
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+K+L ED++L A++ GH + I+AI L + ++ D I+ DK
Sbjct: 183 GTSDAVLMVESEAKELSEDVMLGAVMAGHSSFQPVIDAIIRLAEKAAKEP--RDLILPDK 240
Query: 304 TLIS-KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINC-IL 361
T + ++ I+E+ +R+AY+I +KQ R + ++ L+ E D+ +
Sbjct: 241 TEVEVAVLAIAENDLREAYKITSKQDRYAAVDAVKAKVFGDLLPAEGEAKFPKDLVAEVF 300
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
+DL++K++R ILD G+RID R V +RPI GILPR HGS+LFTRG+TQALVVATLG
Sbjct: 301 HDLQAKVVRWNILDNGIRIDGRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLG 360
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T DEQ ID L G + + F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 361 TGEDEQLIDNLEGTYRERFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMLPT 420
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F Y+IR+VSEITESNGSSSMA+VCG LAL+DAGVP+ AGIAMGLI +GE+ +
Sbjct: 421 PAEFPYTIRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYAV 480
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT GIT+LQMDIKI GI +I+++AL +AK+G +IL +M
Sbjct: 481 LSDILGDEDHLGDMDFKVAGTEEGITSLQMDIKITGINEEIMRVALGQAKEGRLHILGEM 540
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + EL +FAPR+ T++I KIR+VIG GG IR + E+TG +I+I D+G + +
Sbjct: 541 AKAITGARAELGEFAPRIETLRIPTEKIREVIGTGGKVIREICEKTGAKINIEDDGTVKV 600
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS + S + A I+ + ++G +Y G V+++ DFGA + KDGL+HISQ++
Sbjct: 601 ASSDGNSIKAAINWIKSIATDPEVGHIYDGTVVKVVDFGAFVNFFGSKDGLVHISQLAKG 660
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +D +KE KV+VK+LG DDRG+++LSM
Sbjct: 661 RVAKTSDVVKEGDKVKVKLLGFDDRGKVRLSM 692
>gi|418407620|ref|ZP_12980937.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens 5A]
gi|358005606|gb|EHJ97931.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens 5A]
Length = 715
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/692 (48%), Positives = 494/692 (71%), Gaps = 4/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK ++ + +E G++ARQA +V+ + +T++LATVVS K P +FFPLT
Sbjct: 1 MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE+ET++SRLIDRPIRPLFPEGY N+ Q+VV V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPD+ S++ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT+ A++ VESE+K+L ED++L A++FGH + I+AI +L + ++ ++P +D
Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEP--EDF 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN-LTIDINDINCIL 361
L ++++ ++E ++R AY+I K R + + + + E +I +
Sbjct: 239 SALENEMLGLAETELRTAYKITEKAARYAAVDAVKAKVKAHFLPEEGEAKYSPEEIGAVF 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
L++KI+R +LD RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLG
Sbjct: 299 KHLQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T DEQ +D+L G + + F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 TGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPT 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLI +GE+ +
Sbjct: 419 AEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT +GIT+LQMDIKI GIT +I++IAL +A+ G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + +L +FAPR+ + I KIR+VIG GG IR + E+TG +I+I D+G + I
Sbjct: 539 ANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS + + A++ I + ++G++Y G V++ DFGA + +DGL+HISQ++S+
Sbjct: 599 ASASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +D +KE KV VK++G D+RG+++LSM
Sbjct: 659 RVAKTSDVVKEGDKVWVKLMGFDERGKVRLSM 690
>gi|126664893|ref|ZP_01735877.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
gi|126631219|gb|EBA01833.1| polynucleotide phosphorylase/polyadenylase [Marinobacter sp. ELB17]
Length = 706
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/687 (51%), Positives = 477/687 (69%), Gaps = 1/687 (0%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
+ K+F+ G +++E G IARQAT +VLV+I+D +L TVV K+ FFPLTV+Y
Sbjct: 6 VTKTFELGGKTVTLETGRIARQATGAVLVTIDDISVLGTVVGAKEAKPGQGFFPLTVNYT 65
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
EK Y+ G+IPG FFKRE +P+E+ET+ SRLIDRPIRPLFP G++NE+Q+V+ V+S N
Sbjct: 66 EKTYSVGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFPNGFMNEVQVVLTVMSANKTQ 125
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVAGTE 246
DPDIA+++ S AL+IS +PF GP+G ++VG+ + + Y LNPT E+ S LD++VAGTE
Sbjct: 126 DPDIAAMLAASAALAISGIPFEGPIGASRVGFTNERGYFLNPTHEERSTSLLDMIVAGTE 185
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
A++ VES+++ L ED +L A++F H++M+ A++ I E +G+ + W + L+
Sbjct: 186 DAVLMVESQAQSLTEDQMLGAVLFAHQEMQTAVSGIKEFAAEIGKPRWEWQAEAVNAELM 245
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
I I +AY I++K R I + L +E D+ E
Sbjct: 246 GAIKADFADAIAEAYSIRDKMDRYARLGEIKAAAVAKLAGDEEGKHSAEDVKKCFGKTEK 305
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
++R+Q++D RID R +RPI I GILP HGS+LFTRG+TQA+V TLGTSRD
Sbjct: 306 HVVRQQVIDGKPRIDGRDTKTVRPIKIEVGILPGAHGSALFTRGETQAIVTTTLGTSRDM 365
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q IDAL GE D F+ HYN PP++ G+ GR+ P RREIGHGRLAKR LL V+P +F
Sbjct: 366 QIIDALEGESKDPFLFHYNFPPYSVGEAGRMMGPGRREIGHGRLAKRGLLAVMPTVEEFP 425
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
Y+IR VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+K IL+DIL
Sbjct: 426 YTIRAVSEITESNGSSSMASVCGSSLALMDAGVPIKSAVAGIAMGLVKEGDKFAILTDIL 485
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
GDED GDMDFKVAGT GITALQMDIKI GIT +I+++AL +A +IL +M +
Sbjct: 486 GDEDHLGDMDFKVAGTKEGITALQMDIKINGITDEIMELALEQAYGARQHILGEMNKVIA 545
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ ELS AP + TIKI+P KIRDVIGKGGSTIR++ EETG ID++D+G + I + N
Sbjct: 546 ASRTELSSRAPSITTIKINPEKIRDVIGKGGSTIRSICEETGASIDLDDDGNVKIYADNM 605
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+ Q A +R+ ++T +++G +Y G V R+ DFGA + IL GKDGL+HISQIS +R+ +
Sbjct: 606 EAAQAAVKRVMEITAEIEVGAIYQGRVERIVDFGAFVNILPGKDGLVHISQISDRRIENV 665
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLSM 753
TD LKE Q+V VKVL +D+RGR+KLSM
Sbjct: 666 TDELKEGQEVLVKVLDVDNRGRVKLSM 692
>gi|440224993|ref|YP_007332084.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici CIAT
899]
gi|440036504|gb|AGB69538.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici CIAT
899]
Length = 732
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/698 (48%), Positives = 498/698 (71%), Gaps = 4/698 (0%)
Query: 58 MMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTY 117
+M+G +F+ ++ + +E G+IARQA +V+ + +TV+LATVVS K P
Sbjct: 15 IMQGQDMFDIHTVEIEWAGRPLKLETGKIARQADGAVVATYGETVVLATVVSAKAPKPGQ 74
Query: 118 NFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIV 177
+FFPLTV+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLFPEGY N+ Q+V
Sbjct: 75 DFFPLTVNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVV 134
Query: 178 VYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSH 237
V V+ + + +PDI S++ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++ +S
Sbjct: 135 VTVIQHDLENNPDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESS 194
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGT+ A++ VESE+K+LPED++L A++FGH + I+AI +L + ++ ++
Sbjct: 195 LDLVVAGTQDAVLMVESEAKELPEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFQ 254
Query: 298 PIVKDKTLISK-IINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN-LTIDIN 355
P +D + + K ++ ++E ++R AY+I K R + + + + E
Sbjct: 255 P--EDYSELEKEMLGLAEAELRNAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAE 312
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
++ I L++KI+R ILD RID R ++ +RPI G+LPRTHGS+LFTRG+TQA+
Sbjct: 313 EVGAIFKHLQAKIVRWNILDTSSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAI 372
Query: 416 VVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL 475
VVATLGT DEQ +D+L G + + F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+
Sbjct: 373 VVATLGTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAI 432
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535
P+LP+ +F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLI +
Sbjct: 433 RPMLPSAEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILE 492
Query: 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
G++ +LSDILGDED GDMDFKVAGT +GIT+LQMDIKI GIT +I+++AL +A+ G +
Sbjct: 493 GDRFAVLSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRA 552
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
+IL +M + + + +L +FAPR+ + I KIR+VIG GG IR + E+TG +I+I D
Sbjct: 553 HILGEMSKAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIED 612
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+G + IAS + + A++ I + ++G++Y G V++ DFGA + +DGL+HI
Sbjct: 613 DGTVKIASSSGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHI 672
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
SQ++S+RV D +KE KV VK+LG D+RG+++LSM
Sbjct: 673 SQLASERVAKTQDVVKEGDKVWVKLLGFDERGKVRLSM 710
>gi|325291527|ref|YP_004277391.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
gi|325059380|gb|ADY63071.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
Length = 715
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/692 (48%), Positives = 494/692 (71%), Gaps = 4/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK ++ + +E G++ARQA +V+ + +T++LATVVS K P +FFPLT
Sbjct: 1 MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE+ET++SRLIDRPIRPLFPEGY N+ Q+VV V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPD+ S++ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT+ A++ VESE+K+L ED++L A++FGH + I+AI +L + ++ ++P +D
Sbjct: 181 GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEP--EDF 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN-LTIDINDINCIL 361
L ++++ ++E ++R AY+I K R + + + + E +I +
Sbjct: 239 SALENEMLGLAETELRTAYKITEKAARYAAVDAVKAKVKAHFLPEEGEAKYSPEEIGAVF 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
L++KI+R +LD RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLG
Sbjct: 299 KHLQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T DEQ +D+L G + + F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 TGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPT 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLI +GE+ +
Sbjct: 419 AEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT +GIT+LQMDIKI GIT +I++IAL +A+ G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + +L +FAPR+ + I KIR+VIG GG IR + E+TG +I+I D+G + I
Sbjct: 539 ANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS + + A++ I + ++G++Y G V++ DFGA + +DGL+HISQ++S+
Sbjct: 599 ASASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +D +KE KV VK++G D+RG+++LSM
Sbjct: 659 RVAKTSDVVKEGDKVWVKLMGFDERGKVRLSM 690
>gi|381196945|ref|ZP_09904286.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter lwoffii
WJ10621]
Length = 697
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/690 (50%), Positives = 479/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN I K F+YG + + +E G +ARQA ++V++++ +L +V+ + +FFPLT
Sbjct: 3 MFNIIRKEFQYGQHTVVLETGRVARQA-NTVVITMGGVQVLVAIVAQPKAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEG+ NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRQSEAETLISRLIDRPIRPLFPEGFYNEIQVTATVISS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ ++ DIA+++G S A+SI+ +PF GP+ A+VG I+G+YILNPT EQLK+S LDL+VA
Sbjct: 122 DKTMEGDIAAMLGASAAMSIAGVPFAGPIAGARVGLINGEYILNPTLEQLKESDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W VK++
Sbjct: 182 GTEAAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPVKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ K+ E KI +AY I KQ R + + + + E+ T +++ + D
Sbjct: 242 ELLGKLKEAFEAKISEAYTIAVKQERYAALDALHAEAVAQFVPEEDETGIAAEVDELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I++ AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEAALNQAYAGRMHILNEMNQ 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARPEISMHAPTFQVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ A +I+ LT ++ G +Y G V+R+ +FGA + IL G DGLLHISQIS++R+
Sbjct: 602 ETKAAAAAAVAKIQALTAEIEPGTIYVGKVIRIVEFGAFVNILPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE Q+++V+V +D+RGRIKL+M
Sbjct: 662 ANVADVLKEGQEIKVQVADVDNRGRIKLTM 691
>gi|389706053|ref|ZP_10186197.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. HA]
gi|388610819|gb|EIM39933.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter sp. HA]
Length = 697
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/690 (51%), Positives = 480/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA ++V++++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQA-NTVVITMGGVTVLVAVVAQPTAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYYNEIQVTATVISS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ ++ DIA+++G S AL+I+ PF GP+G A+VG I+G+Y+LNP EQ+ +S LDL+VA
Sbjct: 122 DKTMEADIAAMLGTSAALAIAGTPFRGPIGGARVGLINGEYVLNPNYEQMAQSDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G K+ W K++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAKESTWVAPTKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +K+ E KI +AY I KQ R I + + + + T +D+N + D
Sbjct: 242 DLQAKLKEAFEAKISEAYTIAIKQDRYAALDAIQAEAVAQFVPENDETGIADDLNELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R + ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRALDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLSGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVPI VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPIKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAYAGRMHILNAMNQ 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARPEISMHAPTFQVITINPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ Q A +I+ LT V+ G +YTG V+R+ +FGA + IL G DGLLHISQIS++R+
Sbjct: 602 ETKAAAQAAIAKIQALTAEVEPGTIYTGKVIRIVEFGAFVNILPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ D LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 662 ANVADVLKEGQEVKVQVADVDNRGRIKLTM 691
>gi|88797627|ref|ZP_01113216.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Reinekea blandensis MED297]
gi|88779799|gb|EAR10985.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Reinekea sp. MED297]
Length = 706
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/686 (50%), Positives = 482/686 (70%), Gaps = 3/686 (0%)
Query: 70 KSFKYGSYKISIEIGEIARQATSSVLVSIE-DTVILATVVSCKDPTSTYNFFPLTVDYIE 128
KSFK+G + ++IE G +ARQAT S + ++ DTV+LATVV+ + +FFPL+V Y E
Sbjct: 9 KSFKFGQHDVTIETGRVARQATGSAICTMNGDTVVLATVVAKDSVSPGQDFFPLSVHYQE 68
Query: 129 KAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQID 188
K Y+ GRIPG + KREG+PSE+ET+ SRLIDRPIRPLFP+G++NE+Q+++ VLS N D
Sbjct: 69 KFYSVGRIPGGYLKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVIINVLSANKTDD 128
Query: 189 PDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVAGTEK 247
PDIA+++ S AL++S +PF GP+G A+VGY D + Y+LNPT EQL+ S LD++VAGT+
Sbjct: 129 PDIAAMLATSAALAVSGVPFNGPIGAARVGYTDAEGYLLNPTFEQLETSRLDMVVAGTQD 188
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+++L ED +L A++F H++ ++A++AI E G+ +W P +++ L +
Sbjct: 189 AVLMVESEAQELSEDQMLGAVLFAHQEFQVAVSAIAEFAAEHGKPAWDWAPEAENEALKT 248
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
K+ KI +AYQ+ +K R ++ +L E+ +D+ + +E
Sbjct: 249 KVSEAYAAKIAEAYQVSDKMQRYAALSDLRAQAVETLA-TEDGETSADDVASMFGKIEKN 307
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
+R++ILD RID R +R I + G+LP HGS+LFTRG+TQALV TLGT RD +
Sbjct: 308 TVRQRILDGQPRIDGRDGKTVRDIKVEVGVLPGAHGSALFTRGETQALVTTTLGTLRDGK 367
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
D L G TD+FMLHYN PPF+ G+ GRIG RREIGHGRLAKR +L ++PN + F Y
Sbjct: 368 MEDMLTGTITDNFMLHYNFPPFSVGEAGRIGGVGRREIGHGRLAKRGVLAMMPNTDDFPY 427
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
++R+VSEITESNGSSSMASVCG LA++DAGVP+ + VAGIAMGL+K+G+K +L+DILG
Sbjct: 428 TVRVVSEITESNGSSSMASVCGASLAMMDAGVPVKKPVAGIAMGLVKEGDKFTVLTDILG 487
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT NG+TALQMDIKI GIT +I++IAL +A +IL +M +
Sbjct: 488 DEDHLGDMDFKVAGTENGVTALQMDIKIQGITEEIMEIALGQAMDARLHILREMAQVIGY 547
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ EL AP + +K+D KIRDVIGKGG+TIR++ ++TG ++DI+D+G + I +
Sbjct: 548 ARPELPDNAPTMDVMKVDQDKIRDVIGKGGATIRSIIDQTGAEVDISDDGTVRIYAAAKE 607
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ A+ I +T +IG+VY G V RL DFGA + L GKDGL+HISQI+ +R+ +
Sbjct: 608 GAEAARNMILAITAEPEIGEVYKGTVARLADFGAFVTFLPGKDGLVHISQIAQERIEKVA 667
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E + V VKVL +D RGR+KLS+
Sbjct: 668 DKLSEGEAVVVKVLDVDARGRVKLSI 693
>gi|398355878|ref|YP_006401342.1| polyribonucleotide nucleotidyltransferase Pnp [Sinorhizobium fredii
USDA 257]
gi|390131204|gb|AFL54585.1| polyribonucleotide nucleotidyltransferase Pnp [Sinorhizobium fredii
USDA 257]
Length = 717
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/683 (49%), Positives = 487/683 (71%), Gaps = 3/683 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ + +E G+IARQA +VL + +TV+LATVVS K P +FFPLTV+Y EK YA
Sbjct: 10 EWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
AG+IPG +FKREG+PSE ET++SRLIDRPIRPLFPEGY N+ Q+++ V+ + + +PD+
Sbjct: 70 AGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQHDLENNPDVV 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
S++ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++++S LDL+VAGT++A++ V
Sbjct: 130 SMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESSLDLVVAGTQEAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINI 312
ESE+K+LPED++L A++FG + + I+AI +L + ++ +DP L + +++I
Sbjct: 190 ESEAKELPEDVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPREFDP-EDHSALENAMLSI 248
Query: 313 SEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILYDLESKIIR 370
+E ++R AY+I K R + + + EN +I + L++KI+R
Sbjct: 249 AEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGIENPAHSAEEIASVFKHLQAKIVR 308
Query: 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKID 430
ILD RID R + +RPI G+LPRTHGS+LFTRG+TQA+VVATLGT DEQ +D
Sbjct: 309 WNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVD 368
Query: 431 ALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIR 490
+L G + + FMLHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LP +F Y++R
Sbjct: 369 SLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLR 428
Query: 491 LVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDED 550
+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLIK+ ++ +LSDILGDED
Sbjct: 429 VVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFAVLSDILGDED 488
Query: 551 RCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKN 610
GDMDFKVAGT GIT+LQMDIKI GIT +I+ +AL +AK G +IL +M + + +
Sbjct: 489 HLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKAISESRG 548
Query: 611 ELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQ 670
+L +FAPR+ + I KIR+VIG GG IR + E+TG +I+I D+G + IAS + +
Sbjct: 549 QLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIASSSGKEIE 608
Query: 671 EAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFL 730
A++ I + ++G++Y G V++ DFGA + +DGL+HISQ++S+RV TD +
Sbjct: 609 AARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTTDVV 668
Query: 731 KENQKVRVKVLGIDDRGRIKLSM 753
KE KV VK++G D+RG+++LSM
Sbjct: 669 KEGDKVWVKLMGFDERGKVRLSM 691
>gi|365859653|ref|ZP_09399507.1| polyribonucleotide nucleotidyltransferase [Acetobacteraceae
bacterium AT-5844]
gi|363711846|gb|EHL95553.1| polyribonucleotide nucleotidyltransferase [Acetobacteraceae
bacterium AT-5844]
Length = 743
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/699 (50%), Positives = 479/699 (68%), Gaps = 11/699 (1%)
Query: 59 MKGNFLF-NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTY 117
M+G F+F N K +G +++E G+IARQA +V+ + DT++L TVV +
Sbjct: 5 MQGTFMFDNYFRKDINWGGKTLTLETGKIARQADGAVMARLGDTIVLCTVVGARSVKPGQ 64
Query: 118 NFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIV 177
+FFPLTV+Y EKAYAAG+IPG FFKREG+PSE ET+ISRLIDRPIRPLFPEG+ NE+Q++
Sbjct: 65 DFFPLTVNYQEKAYAAGKIPGGFFKREGRPSEAETLISRLIDRPIRPLFPEGFRNEVQVI 124
Query: 178 VYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSH 237
VLS + + PDI S++G S AL++S +PF GP+G A+VGYIDG+Y+LNPT EQ+K+S
Sbjct: 125 ATVLSHDMENSPDIVSLVGCSAALTLSGIPFFGPVGGARVGYIDGQYVLNPTLEQIKQSK 184
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGTE+ ++ VESE+ +L E+++L A+ FGH + I I EL + ++ WD
Sbjct: 185 LDLVVAGTEEGVLMVESEAHELTEEVMLGAVTFGHAAFQPVIQGIIELAEKAAKEP--WD 242
Query: 298 -PIVKDKT--LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDI 354
P +T L K+ + I +AY+ K IR K I + L + E
Sbjct: 243 LPEESAETVALKKKLAELGAASIGEAYKETRKLIRHSKVSEAKKAILAQLSEEE-----A 297
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
+L DLE+ ++R ILD G+RID R +RPI +LPR HGS+LFTRG+TQA
Sbjct: 298 EAAKGLLKDLEADVVRNAILDTGIRIDGRDTKTVRPIVAEVHVLPRAHGSALFTRGETQA 357
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
L VATLGT +DEQ ID L GE+ ++FMLHYN PPF+ + GR+G P RREIGHG+LA RA
Sbjct: 358 LCVATLGTGQDEQIIDQLAGEYRENFMLHYNFPPFSVNETGRMGSPGRREIGHGKLAWRA 417
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
+ P+LP KF Y++R+VSEITESNGSSSMA+VCG L+L+DAG P+ AGIAMGLIK
Sbjct: 418 IRPLLPEKEKFPYTMRVVSEITESNGSSSMATVCGTSLSLMDAGAPLKRPCAGIAMGLIK 477
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+ +LSDILGDED GDMDFKVAG+ GITALQMDIKI IT +I++IAL +AK+G
Sbjct: 478 EDRGFAVLSDILGDEDHLGDMDFKVAGSEEGITALQMDIKITSITPEIMKIALEQAKQGR 537
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+IL +M + + +++ AP++ I + KIR+VIG GG IR + E TGT+IDI
Sbjct: 538 LHILGEMAKGLSGARTDVAGNAPKITVINVPKDKIREVIGTGGKVIRDIVETTGTKIDIE 597
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
D+G I IAS + + Q A RI+ +T ++G +Y G V++ DFGA + L KDGL+H
Sbjct: 598 DDGTIKIASTSPEATQAAIDRIKGITAEAEVGSIYNGTVVKTADFGAFVNFLGAKDGLVH 657
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
IS+++++RVN D + KV+VKV+G DDRG++KLSM
Sbjct: 658 ISELANERVNKTADIVNVGDKVKVKVIGFDDRGKVKLSM 696
>gi|240849876|ref|YP_002971264.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
as4aup]
gi|240266999|gb|ACS50587.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
as4aup]
Length = 731
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/684 (50%), Positives = 488/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ +++E G+IARQA +V+ + +T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +PSE ET++SRLIDRPIRPLF EGY N+ Q++V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+Y+LNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIIN- 311
ESE+++LPEDI+L A++FGH+ ++ ++AI +L + + ++ P +D + + K +
Sbjct: 190 ESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVP--EDLSELEKAMQK 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKII 369
++E IRKAY I +KQ R + +I + + E+ + I + L++KI+
Sbjct: 248 MAEQDIRKAYTITDKQERYAAIDALKTEILNKFMPETEEDCKFSADQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI ILPRTHGS+LFTRG+TQA+VVATLGT DEQ +
Sbjct: 308 RGNILDTQKRIDGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYV 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GR G P RREIGHG+LA RA+ P+LP F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGETGRFGSPGRREIGHGKLAWRAIHPMLPTKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 AELSEFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASADAKAI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ +FGA I +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGAIYQGTVVKTAEFGAFINFFGSRDGLVHISQLASERVTKTTDI 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|359428344|ref|ZP_09219379.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp. NBRC
100985]
gi|358236129|dbj|GAB00918.1| polyribonucleotide nucleotidyltransferase [Acinetobacter sp. NBRC
100985]
Length = 697
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/690 (51%), Positives = 484/690 (70%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA ++VL+++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQA-NTVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+G A+VG I+G+Y+LNPT EQL +S LDL+VA
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPTLEQLAQSDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IA+ AI E VG K+ W ++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAVQAIKEFAAAVGAKESEWVAPTHNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +K+ E KI +AY I KQ R + + + + E++ ++++ + D
Sbjct: 242 ELRAKLKEAFEAKISEAYTIAVKQDRYAALDALYTEAKTQFVPEEDVDGIADEVDFLFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV ATLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLGRAHGSALFTRGETQALVTATLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPPVD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y +R+VS+ITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVLRIVSDITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A +I+ +T V+ G +Y G V+R+ +FGA + IL G DGLLHISQIS++R+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGTIYAGKVIRIVEFGAFVNILPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTM 691
>gi|293610159|ref|ZP_06692460.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427422939|ref|ZP_18913105.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
WC-136]
gi|292827391|gb|EFF85755.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425700039|gb|EKU69630.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
WC-136]
Length = 697
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/690 (51%), Positives = 482/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA ++VL+++ +L VV+ + +FFPLT
Sbjct: 3 MFNIVRKEFQFGQHQVVLETGRVARQA-NTVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+G A+VG I+G+Y+LNP EQLK+S LDL+VA
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W K++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPTKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ ++ E KI +AY I KQ R + + + + + T +++N + D
Sbjct: 242 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A +I+ +T V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 602 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQEVKVQVADVDNRGRIKLTM 691
>gi|395787129|ref|ZP_10466730.1| polyribonucleotide nucleotidyltransferase [Bartonella birtlesii
LL-WM9]
gi|395411553|gb|EJF78074.1| polyribonucleotide nucleotidyltransferase [Bartonella birtlesii
LL-WM9]
Length = 733
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/684 (50%), Positives = 492/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ ++IE G+IARQA +V+ + +T++LATVVS K+P +FFPLTV+Y EK YA
Sbjct: 10 EWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEKFYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +P+E ET+ISRLIDRPIRPLF +GY N+ Q++V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPTENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+Y+LNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMSESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK-IIN 311
ESE+++LPEDI+L A++FGH+ ++ ++AI +L + + ++ P +D + + K ++
Sbjct: 190 ESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVP--EDLSDLEKAMLE 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN--DINCILYDLESKII 369
I+E IRKAY I +KQ R + ++ + + + + I + L++K++
Sbjct: 248 IAEQGIRKAYTITDKQERYAAIDALKTEVINKFTPETGGSSEFSAEQIATVFKQLQAKVV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD G RID R ++ +RPI G+LPRTHGS+LFTRG+TQA+VVATLGT DEQ +
Sbjct: 308 RGNILDTGKRIDGRDLSTVRPIQSEVGLLPRTHGSALFTRGETQAMVVATLGTGEDEQYV 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RAL P+LP F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPTKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ +AGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPIAGIAMGLIKEGERFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +A++G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAREGRIHILNEMAKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 AELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASADAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + +IG +Y G V++ +FGA + +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKRWIHSIVDEPEIGAIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLASERVTKTTDI 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|425746177|ref|ZP_18864209.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
WC-323]
gi|425486826|gb|EKU53191.1| polyribonucleotide nucleotidyltransferase [Acinetobacter baumannii
WC-323]
Length = 697
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/690 (51%), Positives = 481/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN I K F++G +++ +E G +ARQA ++VLV++ +L VV+ + +FFPLT
Sbjct: 3 MFNIIRKEFQFGQHQVVLETGRVARQA-NTVLVTMGGVTVLVAVVAQPKAKAGQDFFPLT 61
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 62 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 121
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+G A+VG I+G+Y+LNP EQL +S LDL+VA
Sbjct: 122 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLAQSDLDLVVA 181
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W K++
Sbjct: 182 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWVAPSKNE 241
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ ++ E KI +AY I KQ R + + + + + T +++N + D
Sbjct: 242 VLLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 301
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 302 LKYRTVRDNILSGKPRIDGRDTKTVRGIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 361
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 362 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 421
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 422 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 481
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 482 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 541
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 542 VISRARAEISANAPTFEVININPDKIRDVIGKGGATIRAITEETKAAIDIEDNGTVRVFG 601
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A +I+ LT V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 602 ETKAAARAAIAKIQALTAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 661
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+++V+V +D+RGRIKL+M
Sbjct: 662 ANVTDVLKEGQELKVQVADVDNRGRIKLTM 691
>gi|431926156|ref|YP_007239190.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri
RCH2]
gi|431824443|gb|AGA85560.1| polyribonucleotide nucleotidyltransferase [Pseudomonas stutzeri
RCH2]
Length = 701
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/691 (50%), Positives = 479/691 (69%), Gaps = 3/691 (0%)
Query: 65 FNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTV-ILATVVSCKDPTSTYNFFPLT 123
N +IK F++G +++E G IARQA+ +VLV+++D V +L V K + FFPL+
Sbjct: 1 MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVAVTGAKTADPSKGFFPLS 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG+IPG FFKRE +PSE+ET+ SRLIDRPIRPLFPEG+ NE+Q++ V+S
Sbjct: 61 VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGY-IDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDIA++IG S AL++S +PF GP+G A+V + + Y+LNP EQLK S LD++V
Sbjct: 121 SKKTDPDIAAMIGTSAALAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE+K+L ED +L A++F H++ + I A+ EL G+ + +W +
Sbjct: 181 AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVEELAAEAGKPRWDWTAPQAN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L+ I I +AY I KQ R + KD + E ++
Sbjct: 241 TALLDAIRAEFGEAISQAYTITIKQDRYARLGEL-KDQVVAKFSGEEGQPSAGEVKDAFG 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
++E + +R+ I++ RID R +R ++I G+L +THGS+LFTRG+TQALVVATLGT
Sbjct: 300 EIEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+RD Q +D L GE D FMLHYN PP++ G+ GR+G RREIGHGRLA+R + +LP+
Sbjct: 360 ARDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPSA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+GEK +L
Sbjct: 420 DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I++ AL +A + IL +M
Sbjct: 480 TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEQALEQALEARLNILGQMN 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + ++ELS AP +I +KID KIRDVIGKGG+TIR + EET IDI D+G I I
Sbjct: 540 QVIAQSRSELSANAPTMIAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + AK+R+ +T +IGK+Y G V R+ DFGA + IL GKDGL+HISQIS +R
Sbjct: 600 GETKEAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ +TD LKE Q+V+V VL +D+RGRIKLS+
Sbjct: 660 IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSI 690
>gi|387815575|ref|YP_005431065.1| polynucleotide phosphorylase/polyadenylase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381340595|emb|CCG96642.1| polynucleotide phosphorylase/polyadenylase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 706
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/686 (52%), Positives = 482/686 (70%), Gaps = 1/686 (0%)
Query: 69 IKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIE 128
IK+F+ G ++E G IARQAT +VLVS DT +L TVV K+P FFPLTV+Y E
Sbjct: 7 IKTFEMGGETFTLETGRIARQATGAVLVSTGDTAVLGTVVGAKEPKPGQGFFPLTVNYQE 66
Query: 129 KAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQID 188
K YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP GY+NE+Q+V+ V+S + D
Sbjct: 67 KTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGYMNEVQVVLTVMSASKNHD 126
Query: 189 PDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK-YILNPTTEQLKKSHLDLLVAGTEK 247
PDIA++I S AL+IS +PF GP+G A+VGY + K Y LNPT E+L S LD++VAGT++
Sbjct: 127 PDIAAMIAASAALAISGIPFDGPIGAARVGYTNEKGYFLNPTFEELSTSLLDMVVAGTDE 186
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+K L ED +L A++FGH++M+ AI AI E G+ + W P ++ L++
Sbjct: 187 AVLMVESEAKGLTEDQMLGAVLFGHQEMQTAITAIKEFAAENGKPRWEWQPEAENTELLN 246
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 367
I I +AY I++K R I L E ++ +E
Sbjct: 247 AIKAEFGGAIEEAYAIRDKMARYERLGEIKSAAVEKLAGEEEGQPSEEEVKKYFGKVEKS 306
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 427
++R Q+++ RID R +RPI + G+LP HGS+LFTRG+TQA+V ATLGT+RD Q
Sbjct: 307 VVRLQVIEGKPRIDGRDNKTVRPIKVEVGVLPSVHGSALFTRGETQAIVTATLGTTRDVQ 366
Query: 428 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
IDAL GE D F+ HYN PP++ G+ GR+G P RREIGHGRLAKR + V+P +F Y
Sbjct: 367 IIDALEGERKDPFLFHYNFPPYSVGEAGRMGSPGRREIGHGRLAKRGVAAVMPTIEEFPY 426
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
+IR VSEITESNGSSSMASVCG LAL+DAGVP+ VAGIAMGL+K+G+K +L+DILG
Sbjct: 427 AIRAVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDKFAVLTDILG 486
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
DED GDMDFKVAGT G+TALQMDIKI GIT +I++IAL +A +IL++M + +
Sbjct: 487 DEDHLGDMDFKVAGTKEGVTALQMDIKIQGITDEIMEIALEQANAARLHILDEMNKVIAE 546
Query: 608 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 667
+ ELS AP + TIKI P KIRDVIGKGG+TIR + +ETG ID++D+G + I + N+
Sbjct: 547 PRAELSDRAPSITTIKIHPDKIRDVIGKGGATIRGICDETGASIDLDDDGNVKIYADNAA 606
Query: 668 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 727
+ Q A R++++T +++G +Y G V R+ DFGA + IL GKDGL+HISQIS +R+ +T
Sbjct: 607 AAQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNILPGKDGLVHISQISERRIENVT 666
Query: 728 DFLKENQKVRVKVLGIDDRGRIKLSM 753
D L E Q+V VKVL +D+RGR+KLSM
Sbjct: 667 DELSEGQEVLVKVLDVDNRGRVKLSM 692
>gi|378828391|ref|YP_005191123.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
HH103]
gi|365181443|emb|CCE98298.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
HH103]
Length = 717
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/683 (49%), Positives = 487/683 (71%), Gaps = 3/683 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ + +E G+IARQA +VL + +TV+LATVVS K P +FFPLTV+Y EK YA
Sbjct: 10 EWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEKTYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
AG+IPG +FKREG+PSE ET++SRLIDRPIRPLFPEGY N+ Q+++ V+ + + +PD+
Sbjct: 70 AGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQHDLENNPDVV 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
S++ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++++S LDL+VAGT++A++ V
Sbjct: 130 SMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESSLDLVVAGTQEAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINI 312
ESE+K+LPED++L A++FG + + I+AI +L + ++ +DP L + +++I
Sbjct: 190 ESEAKELPEDVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPREFDP-EDHSALENAMLSI 248
Query: 313 SEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN--ENLTIDINDINCILYDLESKIIR 370
+E ++R AY+I K R + + + EN +I + L++KI+R
Sbjct: 249 AEDELRNAYKITEKAARYAAVDAVKAKVKEHFLPEGIENPAHSAEEIASVFKHLQAKIVR 308
Query: 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKID 430
ILD RID R + +RPI G+LPRTHGS+LFTRG+TQA+VVATLGT DEQ +D
Sbjct: 309 WNILDTKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVD 368
Query: 431 ALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIR 490
+L G + + FMLHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LP +F Y++R
Sbjct: 369 SLTGMYKERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLR 428
Query: 491 LVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDED 550
+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLIK+ ++ +LSDILGDED
Sbjct: 429 VVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFAVLSDILGDED 488
Query: 551 RCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKN 610
GDMDFKVAGT GIT+LQMDIKI GIT +I+ +AL +AK G +IL +M + + +
Sbjct: 489 HLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKAISESRG 548
Query: 611 ELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQ 670
+L +FAPR+ + I KIR+VIG GG IR + E+TG +I+I D+G + IAS + +
Sbjct: 549 QLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIASSSGKEIE 608
Query: 671 EAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFL 730
A++ I + ++G++Y G V++ DFGA + +DGL+HISQ++S+RV TD +
Sbjct: 609 AARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTTDVV 668
Query: 731 KENQKVRVKVLGIDDRGRIKLSM 753
KE KV VK++G D+RG+++LSM
Sbjct: 669 KEGDKVWVKLMGFDERGKVRLSM 691
>gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi
BJ001]
gi|226702662|sp|B1ZGS7.1|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi
BJ001]
Length = 745
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/691 (49%), Positives = 487/691 (70%), Gaps = 2/691 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ + +G K+ +E G+ ARQA +V+ + +T +LATVV+ K+P + +F PLT
Sbjct: 1 MFDVQREELIWGDRKLVLETGKTARQADGAVVATYGETTVLATVVAAKEPKAGIDFMPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+AYAAGRIPG +FKREG+PSE+ET++SRLIDRPIRPLF EG+ N+ Q+VV VLS
Sbjct: 61 VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPDI S++ S AL++S +PF+GP+G A+VGY++G Y LNP ++ +S LDL+VA
Sbjct: 121 DLENDPDIVSMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAESTLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+K+L ED++L A++FGH+ + I AI L + ++ ++ P ++
Sbjct: 181 GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFSP-PENA 239
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN-LTIDINDINCILY 362
+ +++I E ++R AY+I KQ R + + ++L E +
Sbjct: 240 DVEKAVLDICESELRDAYKITVKQDRYKAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFK 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+ +SK++R ILD G RID R V +RPI G+LPR HGSSLFTRG+TQALVVATLGT
Sbjct: 300 EAQSKVVRWNILDTGSRIDGRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
DEQ IDAL G + + F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ PVLP
Sbjct: 360 GEDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPA 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
++F Y+IR+VSEITESNGSSSMASVCGG L+L+DAGVP+ VAGIAMGLI +GE+ +L
Sbjct: 420 HEFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GIT+LQMDIKI GIT +I+++AL +AK G ++IL +M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTDEGITSLQMDIKIAGITEEIMRVALAQAKDGRAHILGEMA 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ + EL ++APR+ T++I KIRDVIG GG IR + E+TG +I+I D G++ IA
Sbjct: 540 QALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGVVKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
S + + + A I + + G +Y G ++++ +FGA + KDGL+HIS+++ +R
Sbjct: 600 SSDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAPQR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V + D +KE QKV+VK LG D+RG+I+LSM
Sbjct: 660 VAKVGDVVKEGQKVKVKFLGADERGKIRLSM 690
>gi|375136889|ref|YP_004997539.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
calcoaceticus PHEA-2]
gi|325124334|gb|ADY83857.1| polynucleotide phosphorylase/polyadenylase [Acinetobacter
calcoaceticus PHEA-2]
Length = 695
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/690 (51%), Positives = 482/690 (69%), Gaps = 1/690 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN + K F++G +++ +E G +ARQA ++VL+++ +L VV+ + +FFPLT
Sbjct: 1 MFNIVRKEFQFGQHQVVLETGRVARQA-NTVLITMGGVTVLVAVVAQPKAKAGQDFFPLT 59
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAGRIPG + KREG+ SE ET+ISRLIDRPIRPLFPEGY NEIQ+ V+S
Sbjct: 60 VNYQEKQYAAGRIPGGYGKREGRASEAETLISRLIDRPIRPLFPEGYFNEIQVTATVVSS 119
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ +D DIA+++G S ALSI+ PF GP+G A+VG I+G+Y+LNP EQLK+S LDL+VA
Sbjct: 120 DKTMDADIAAMLGTSAALSIAGTPFRGPIGGARVGLINGEYVLNPNFEQLKESDLDLVVA 179
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE+K+L ED +L A++FGH++M+IAI AI E G + W K++
Sbjct: 180 GTESAVLMVESEAKELSEDQMLGAVLFGHDEMQIAIQAIKEFAAAAGAVESTWIAPTKNE 239
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L+ ++ E KI +AY I KQ R + + + + + T +++N + D
Sbjct: 240 ALLEQLKAAFEAKISEAYTIAVKQDRYAALDALYAEAVAQFVPENDETGIADEVNELFED 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
L+ + +R IL RID R +R I ++ G+L R HGS+LFTRG+TQALV TLG +
Sbjct: 300 LKYRTVRDNILSGKPRIDGRDTKTVRAIDVQVGVLDRAHGSALFTRGETQALVTTTLGNT 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD +D L G TD+FMLHYN P ++ G+ GR PKRREIGHGRLA+R + VLP +
Sbjct: 360 RDALMVDTLAGTKTDNFMLHYNFPAYSVGETGRESGPKRREIGHGRLARRGVQAVLPAAD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y IR+VS+ITESNGSSSMASVCG L+L+DAGVP+ VAGIAMGL+K+GE+ +LS
Sbjct: 420 RFPYVIRIVSDITESNGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +A G +IL +M
Sbjct: 480 DILGDEDHLGDMDFKVAGSANGITALQMDIKIEGITEEIMEVALNQAFAGRMHILNEMNK 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + E+S AP I I+P KIRDVIGKGG+TIR +TEET IDI D G + +
Sbjct: 540 VISRARAEISAHAPTFEVININPDKIRDVIGKGGATIRQITEETKAAIDIEDNGTVRVFG 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A +I+ +T V+ GK+Y G V+R+ +FGA + I+ G DGLLHISQIS++R+
Sbjct: 600 ETKAAAKAAIAKIQAITAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERI 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD LKE Q+V+V+V +D+RGRIKL+M
Sbjct: 660 ANVTDVLKEGQEVKVQVADVDNRGRIKLTM 689
>gi|15887437|ref|NP_353118.1| polyribonucleotide nucleotidyltransferase [Agrobacterium fabrum
str. C58]
gi|187470963|sp|A9CKQ7.1|PNP_AGRT5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|15154950|gb|AAK85903.1| polyribonucleotide nucleotidyltransferase [Agrobacterium fabrum
str. C58]
Length = 713
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/692 (48%), Positives = 495/692 (71%), Gaps = 4/692 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK ++ + +E G++ARQA +V+ + +T++LATVVS K P +FFPLT
Sbjct: 1 MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE+ET++SRLIDRPIRPLFPEGY N+ Q+VV V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DPD+ S++ S AL++S +PF+GP+G A+VGYI+G+Y+LNP +++ +S LDL+VA
Sbjct: 121 DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD- 302
GT+ A++ VESE+K+L E+I+L A++FGH+ + I+AI +L + ++ ++P +D
Sbjct: 181 GTQDAVLMVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFEP--EDF 238
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN-LTIDINDINCIL 361
L ++++ ++E ++R AY+I K R + + + + E +I +
Sbjct: 239 SALENEMLGLAETELRTAYKITEKAARYAAVDAVKTKVKAHFLPEEGEAKYSPEEIGAVF 298
Query: 362 YDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLG 421
L++KI+R +LD RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLG
Sbjct: 299 KHLQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLG 358
Query: 422 TSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPN 481
T DEQ +D+L G + + F+LHYN PP++ G+ GR+G P RREIGHG+LA RA+ P+LP
Sbjct: 359 TGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPT 418
Query: 482 NNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVI 541
+F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+++ VAGIAMGLI +GE+ +
Sbjct: 419 AEQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAV 478
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
LSDILGDED GDMDFKVAGT +GIT+LQMDIKI GIT +I++IAL +A+ G +IL +M
Sbjct: 479 LSDILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEM 538
Query: 602 KTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITI 661
+ + + +L +FAPR+ + I KIR+VIG GG IR + E+TG +I+I D+G + I
Sbjct: 539 ANAITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKI 598
Query: 662 ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK 721
AS + + A++ I + ++G++Y G V++ DFGA + +DGL+HISQ++S+
Sbjct: 599 ASASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASE 658
Query: 722 RVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
RV +D +KE KV VK++G D+RG+++LSM
Sbjct: 659 RVAKTSDVVKEGDKVWVKLMGFDERGKVRLSM 690
>gi|349701063|ref|ZP_08902692.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
europaeus LMG 18494]
Length = 711
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/695 (50%), Positives = 488/695 (70%), Gaps = 14/695 (2%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN K ++G + +E G+IARQA +V+++ DTV+L T V K +FFPLT
Sbjct: 1 MFNYFRKEIEWGGRPLVLETGKIARQADGAVVITYGDTVVLCTAVGAKSVKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EKAYAAG+IPG FFKREG+PSE E + SRLIDRPIRPLFPE + NE+Q+V VLS
Sbjct: 61 VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + DP + ++IG S AL++S +PF GP+G A+VGY +GKY+LNPT QLK+S LDL+VA
Sbjct: 121 DMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD---PIV 300
GT + ++ VESE+ +L E+++L A+ FGHE + I+AI +L ++ K W+ P
Sbjct: 181 GTSEGVLMVESEAVELSEEVMLGAVTFGHEAFQPVIDAIIDLAESAA--KAPWELAEPTA 238
Query: 301 KDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNIS--KDIYSSLIDNENLTIDINDIN 358
++ L K+ + I AY+ + KQ+R +K ++ +D + I D +
Sbjct: 239 EEIKLRKKVDKVGRALIADAYKERAKQVR---YKKVAAARDAILAKIGE----ADADAAK 291
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
++ DLE+ ++R ++LD G RID R + IRPI GILPR HGS+LFTRG+TQALVVA
Sbjct: 292 PMIKDLEADVVRTEVLDTGFRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVA 351
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT +DEQ +DAL GE+ ++FMLHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+
Sbjct: 352 TLGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPL 411
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP + F Y++R+VSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLIK+ E
Sbjct: 412 LPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEDED 471
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+LSDILGDED GDMDFKVAGT G+TALQMDIKI IT +I++IAL +A++G +IL
Sbjct: 472 FAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARQGRLHIL 531
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
+M + + ++++S AP++ TI + KIRDVIG+GG IR + E +G +IDIND+G
Sbjct: 532 GEMAKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGT 591
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
I IA+ + ++A RI + ++G +Y G V++ DFGA + L +DGL+HIS++
Sbjct: 592 IMIAASSDDQAEKAIERIRGIVAEPEVGHIYNGKVVKTADFGAFVNFLGPRDGLVHISEL 651
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+ RV+ TD +K+ +V+VKVLG DDRG++KLSM
Sbjct: 652 AQGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSM 686
>gi|398828034|ref|ZP_10586236.1| polyribonucleotide nucleotidyltransferase [Phyllobacterium sp.
YR531]
gi|398218752|gb|EJN05254.1| polyribonucleotide nucleotidyltransferase [Phyllobacterium sp.
YR531]
Length = 713
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/695 (49%), Positives = 494/695 (71%), Gaps = 9/695 (1%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN+ ++G + +E G+IARQA +VL + +TV+LATVVS K P +FFPLT
Sbjct: 1 MFNQHKVEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKSPKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK YAAG+IPG +FKREG+PSE ET++SRLIDRPIRPLF +GY N+ Q+V+ V+
Sbjct: 61 VNYQEKTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFADGYKNDTQVVLTVIQH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + +PDI S+IG S AL++S +PF+GP+G A+VGYI+G+Y LNPT +++ +S LDL+VA
Sbjct: 121 DLENNPDIISLIGASAALTLSGVPFMGPIGGARVGYINGEYRLNPTVDEMPESSLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VESE+K+L ED++L A++FGH + I+AI +L + ++ ++ D
Sbjct: 181 GTGDAVLMVESEAKELAEDVMLGAVMFGHRSFQPVIDAIIKLAEVAAKEPRDFQ--ADDV 238
Query: 304 TLI-SKIINISEHKIRKAYQIKNKQIR----DLTFKNISKDIYSSLIDNENLTIDINDIN 358
+ + ++ ++E +R AY+I +KQ R D + + ++ + + +I
Sbjct: 239 SAAEAAVLKVAETDLRAAYKITDKQDRYNAVDAAKAKVKAHFFPEGVEEPEFSAE--EIA 296
Query: 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA 418
+ +++KI+R ILD G RID R ++ +RPI G+LPRTHGS+LFTRG+TQA+VVA
Sbjct: 297 TVFKSVQAKIVRWNILDTGSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVA 356
Query: 419 TLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPV 478
TLGT DEQ +D+L G + ++FMLHYN PP++ G+ GR+G P RREIGHG+LA RA+ PV
Sbjct: 357 TLGTGEDEQYVDSLTGMYKETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPV 416
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
LP +F Y++R VSEITESNGSSSMA+VCG LAL+DAGVP+ VAGIAMGLI +GEK
Sbjct: 417 LPAKEQFPYTLRTVSEITESNGSSSMATVCGTSLALMDAGVPLLRPVAGIAMGLILEGEK 476
Query: 539 VVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYIL 598
+LSDILGDED GDMDFKVAG+ NGITALQMDIKI GIT +I+++AL +AK G +IL
Sbjct: 477 FAVLSDILGDEDHLGDMDFKVAGSENGITALQMDIKIDGITEEIMKVALAQAKDGRLHIL 536
Query: 599 EKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 658
+M + + ++EL +FAPR+ + I KIRDVIG GG IR + E+TG +I+I D+G
Sbjct: 537 GEMAKAITEGRSELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAKINIEDDGT 596
Query: 659 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 718
+ IAS ++ + A++ I + ++G++Y G V++ DFGA + +DGL+HISQ+
Sbjct: 597 VKIASSSAKEIEAARKWIHSIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQL 656
Query: 719 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+S RV +D +KE QKV VK++G D+RG+++LSM
Sbjct: 657 ASDRVAKTSDVVKEGQKVWVKLMGFDERGKVRLSM 691
>gi|395764551|ref|ZP_10445177.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. DB5-6]
gi|395414378|gb|EJF80821.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. DB5-6]
Length = 733
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/684 (50%), Positives = 489/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ ++IE G+IARQA +V+ + +T++LATVVS K+P +FFPLTV+Y EK YA
Sbjct: 10 EWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEKLYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
G+IPG + KRE +P+E ET+ISRLIDRPIRPLF GY N+ Q++V V+ + + +PDI
Sbjct: 70 VGKIPGGYLKRENRPTESETLISRLIDRPIRPLFANGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+Y+LNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK-IIN 311
ESE+++LPEDI+L A++FGH+ + ++AI +L + + ++ P +D + + K ++
Sbjct: 190 ESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPRDFVP--EDLSDLEKTMLE 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKII 369
++E IRKAY I +KQ R + ++ + I EN + I + L++KI+
Sbjct: 248 MAEQNIRKAYTITDKQERYAAIDALKAEVINKFIPETEENCKFSTDQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI ILPRTHGS+LFTRG+TQA+VVATLGT DEQ +
Sbjct: 308 RGNILDTQKRIDGRDLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYV 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RAL P+LP+ F Y+I
Sbjct: 368 DSLTGMYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPSKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ +LSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAVLSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +A+ G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQARGGRIHILNEMSKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 AELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASADAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AKR I + + ++G +Y G V++ +FGA + +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKRWIHSIVDEPEVGAIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLASERVTKTTDV 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+++LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKVRLSM 691
>gi|395791475|ref|ZP_10470933.1| polyribonucleotide nucleotidyltransferase [Bartonella alsatica IBS
382]
gi|395408838|gb|EJF75448.1| polyribonucleotide nucleotidyltransferase [Bartonella alsatica IBS
382]
Length = 733
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/684 (51%), Positives = 489/684 (71%), Gaps = 5/684 (0%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++ ++IE G+IARQA +V+ + T++LATVVS K P +FFPLTV+Y EK+YA
Sbjct: 10 EWAGRPLTIETGKIARQADGAVIATYGGTIVLATVVSAKSPKPDQDFFPLTVNYQEKSYA 69
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
GRIPG + KRE +P+E ET+ISRLIDRPIRPLF +GY N+ Q++V V+ + + +PDI
Sbjct: 70 VGRIPGGYLKRESRPTENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNPDIL 129
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++I S AL++S +PF+GP+ A+VGY +G+YILNP +++ +S LDL+VAGTE A++ V
Sbjct: 130 AMIASSAALTLSGVPFMGPIASARVGYCNGQYILNPHIDEMPESKLDLVVAGTENAVLMV 189
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISK-IIN 311
ESE+++LPE+I+L A++FGH+ ++ ++AI +L + + ++ P +D T + K ++
Sbjct: 190 ESEAQELPENIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPRDFVP--EDLTDLEKAMLE 247
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI--DNENLTIDINDINCILYDLESKII 369
++E IRKAY I +KQ R + ++ + I E+ + I + L++KI+
Sbjct: 248 MAEQDIRKAYTIADKQERYAAIDALKTEVINKFIPETEESSEFSADQIATVFKQLQAKIV 307
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R ILD RID R ++ +RPI GILPRTHGS+LFTRG+TQA+VVATLGT DEQ I
Sbjct: 308 RWNILDTKKRIDGRDLSTVRPIESEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYI 367
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
D+L G + ++F+LHYN PPF+ G+ GR+G P RREIGHG+LA RA+ P+LP F Y+I
Sbjct: 368 DSLTGTYKETFLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTKESFPYTI 427
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDE 549
R VSEITESNGSSSMA+VCG LAL+DAGVP++ VAGIAMGLIK+GE+ ILSDILGDE
Sbjct: 428 RAVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFAILSDILGDE 487
Query: 550 DRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609
D GDMDFKVAGT NGITALQMDIKI GIT +I++IAL +AK G +IL +M + +
Sbjct: 488 DHLGDMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKSGRIHILNEMSKALTSAR 547
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
ELS+F+PR+ + I KIRDVIG GG IR + E+TG +I+I D+G I IAS ++ +
Sbjct: 548 AELSEFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAKINIEDDGTIKIASADAKTI 607
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
+ AK I + + +IG +Y G V++ +FGA + +DGL+HISQ++S+RV TD
Sbjct: 608 EAAKHWIHSIVDEPEIGAIYQGTVVKTAEFGAFVNFFGSRDGLVHISQLASERVIKTTDI 667
Query: 730 LKENQKVRVKVLGIDDRGRIKLSM 753
+KE KV VK++G D+RG+I+LSM
Sbjct: 668 VKEGDKVWVKLMGFDERGKIRLSM 691
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.139 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,079,899,619
Number of Sequences: 23463169
Number of extensions: 470839481
Number of successful extensions: 1337156
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11962
Number of HSP's successfully gapped in prelim test: 5625
Number of HSP's that attempted gapping in prelim test: 1298864
Number of HSP's gapped (non-prelim): 26607
length of query: 755
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 604
effective length of database: 8,816,256,848
effective search space: 5325019136192
effective search space used: 5325019136192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)