Query psy3754
Match_columns 755
No_of_seqs 650 out of 4044
Neff 6.9
Searched_HMMs 29240
Date Sat Aug 17 00:43:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aid_A Polyribonucleotide nucl 100.0 4E-163 1E-167 1414.6 70.2 701 46-755 5-707 (726)
2 3cdi_A Polynucleotide phosphor 100.0 3E-158 9E-163 1382.4 60.4 691 64-755 7-697 (723)
3 1e3p_A Guanosine pentaphosphat 100.0 4E-156 1E-160 1367.5 60.2 685 68-755 28-741 (757)
4 3u1k_A Polyribonucleotide nucl 100.0 5E-138 2E-142 1195.9 67.2 609 68-680 6-629 (630)
5 3gme_A Polyribonucleotide nucl 100.0 7E-133 2E-137 1130.3 56.4 549 64-613 1-549 (549)
6 3m7n_D Probable exosome comple 100.0 5.2E-45 1.8E-49 381.8 24.0 226 373-610 11-242 (258)
7 2wnr_B Probable exosome comple 100.0 1.2E-44 4.1E-49 376.1 25.7 227 371-609 9-238 (240)
8 2nn6_B Exosome complex exonucl 100.0 5.6E-45 1.9E-49 380.6 22.7 231 371-611 9-242 (249)
9 2po1_A Probable exosome comple 100.0 3.4E-44 1.2E-48 374.7 23.6 228 371-610 9-239 (249)
10 3hkm_A OS03G0854200 protein; R 100.0 2.1E-43 7.1E-48 367.2 22.2 219 376-610 2-235 (246)
11 2je6_B RRP41, exosome complex 100.0 6E-43 2.1E-47 365.5 24.6 227 372-610 14-243 (250)
12 3dd6_A Ribonuclease PH; exorib 100.0 1E-42 3.4E-47 364.1 25.8 228 376-610 9-252 (255)
13 2po1_B Probable exosome comple 100.0 9.8E-43 3.4E-47 369.2 25.3 238 359-608 8-275 (277)
14 1oys_A Ribonuclease PH; transf 100.0 5.1E-43 1.7E-47 365.0 21.9 228 378-612 1-244 (245)
15 3b4t_A Ribonuclease PH; RNAse, 100.0 3.5E-42 1.2E-46 362.1 25.9 236 375-619 3-256 (262)
16 2wp8_B Exosome complex compone 100.0 1E-42 3.5E-47 363.0 21.5 227 372-610 6-237 (246)
17 2wnr_A Probable exosome comple 100.0 5.5E-42 1.9E-46 362.5 26.9 234 361-606 8-270 (271)
18 3m7n_G Probable exosome comple 100.0 1E-41 3.6E-46 357.9 28.7 233 359-603 4-258 (259)
19 1udn_A Ribonuclease PH, RNAse 100.0 2.4E-41 8.3E-46 354.3 26.4 222 378-607 1-238 (255)
20 2nn6_C Exosome complex exonucl 100.0 1.9E-41 6.5E-46 359.7 23.8 241 358-608 4-275 (278)
21 2nn6_F MTR3, exosome component 100.0 3.3E-42 1.1E-46 364.2 16.0 226 375-609 23-263 (272)
22 1r6l_A Ribonuclease PH; beta-a 100.0 1.3E-40 4.4E-45 345.7 26.4 221 378-606 2-238 (239)
23 2je6_A RRP42, exosome complex 100.0 5.6E-41 1.9E-45 355.9 24.1 232 363-606 15-276 (277)
24 2wp8_A Exosome complex compone 100.0 4.8E-40 1.6E-44 353.2 20.8 239 361-610 7-288 (305)
25 2nn6_E Exosome complex exonucl 100.0 4.8E-40 1.6E-44 353.1 19.9 239 359-609 18-292 (305)
26 3dd6_A Ribonuclease PH; exorib 100.0 1.2E-39 4E-44 340.8 20.5 207 75-291 20-252 (255)
27 2je6_B RRP41, exosome complex 100.0 4.1E-39 1.4E-43 336.5 24.4 208 76-293 30-245 (250)
28 2nn6_A Polymyositis/scleroderm 100.0 3.1E-39 1.1E-43 352.2 24.0 236 361-609 23-290 (358)
29 2nn6_D Exosome complex exonucl 100.0 1.4E-39 4.8E-44 337.4 20.2 217 373-609 11-234 (237)
30 2wp8_B Exosome complex compone 100.0 3.1E-39 1E-43 336.7 19.8 212 76-295 22-241 (246)
31 3b4t_A Ribonuclease PH; RNAse, 100.0 1.3E-38 4.5E-43 334.9 23.8 217 76-299 16-255 (262)
32 2wnr_A Probable exosome comple 100.0 6.9E-37 2.4E-41 323.5 24.6 203 76-287 34-270 (271)
33 2nn6_F MTR3, exosome component 100.0 7.2E-39 2.5E-43 338.7 9.3 208 76-293 36-266 (272)
34 3m7n_D Probable exosome comple 100.0 1E-36 3.6E-41 318.9 23.8 203 76-288 26-239 (258)
35 3m7n_G Probable exosome comple 100.0 8.8E-37 3E-41 320.4 20.5 201 75-284 31-258 (259)
36 2je6_A RRP42, exosome complex 100.0 1.9E-36 6.6E-41 321.0 22.7 202 76-286 39-275 (277)
37 3krn_A Protein C14A4.5, confir 100.0 7.4E-40 2.5E-44 336.0 -3.6 201 76-296 5-215 (222)
38 1r6l_A Ribonuclease PH; beta-a 100.0 1.9E-36 6.5E-41 314.3 21.4 202 76-287 12-238 (239)
39 2po1_A Probable exosome comple 100.0 2.8E-35 9.5E-40 307.3 24.8 202 76-290 26-238 (249)
40 2nn6_C Exosome complex exonucl 100.0 7.9E-36 2.7E-40 316.5 20.0 204 76-288 34-274 (278)
41 1udn_A Ribonuclease PH, RNAse 100.0 9E-36 3.1E-40 312.0 20.1 203 76-288 11-238 (255)
42 1oys_A Ribonuclease PH; transf 100.0 9.3E-36 3.2E-40 310.2 18.8 207 76-289 11-240 (245)
43 3hkm_A OS03G0854200 protein; R 100.0 6.8E-36 2.3E-40 310.7 17.4 200 76-291 14-235 (246)
44 2nn6_B Exosome complex exonucl 100.0 3.4E-34 1.2E-38 299.1 20.2 208 76-292 26-242 (249)
45 2nn6_E Exosome complex exonucl 100.0 7.9E-35 2.7E-39 312.6 15.0 204 76-291 46-293 (305)
46 3krn_A Protein C14A4.5, confir 100.0 9.6E-37 3.3E-41 312.9 -0.1 202 385-609 2-209 (222)
47 2nn6_D Exosome complex exonucl 100.0 3.7E-33 1.3E-37 289.1 22.1 197 76-290 30-234 (237)
48 2nn6_A Polymyositis/scleroderm 100.0 2.3E-33 7.9E-38 305.9 21.2 200 76-290 49-290 (358)
49 2wnr_B Probable exosome comple 100.0 7.3E-33 2.5E-37 287.5 21.6 205 76-290 26-238 (240)
50 3u1k_A Polyribonucleotide nucl 100.0 1.3E-32 4.3E-37 317.9 22.9 238 76-328 328-589 (630)
51 2po1_B Probable exosome comple 100.0 4.8E-32 1.6E-36 287.2 24.9 206 76-290 36-276 (277)
52 2wp8_A Exosome complex compone 100.0 1.4E-32 4.9E-37 295.1 15.2 203 76-292 33-289 (305)
53 4aid_A Polyribonucleotide nucl 100.0 4.4E-31 1.5E-35 307.6 21.1 239 76-329 340-593 (726)
54 3gme_A Polyribonucleotide nucl 100.0 8.2E-31 2.8E-35 297.0 21.9 205 76-288 324-543 (549)
55 1e3p_A Guanosine pentaphosphat 100.0 7.7E-30 2.6E-34 299.6 22.4 215 76-299 365-598 (757)
56 3cdi_A Polynucleotide phosphor 100.0 5E-29 1.7E-33 291.9 20.1 215 76-298 330-559 (723)
57 2vqe_O 30S ribosomal protein S 99.9 1.8E-23 6E-28 180.5 5.3 63 1-63 1-63 (89)
58 3ulw_A 30S ribosomal protein S 99.9 4.6E-23 1.6E-27 179.1 4.4 63 1-63 4-66 (93)
59 3r8n_O 30S ribosomal protein S 99.9 1.1E-22 3.9E-27 174.9 5.6 62 2-63 1-62 (88)
60 1a32_A Ribosomal protein S15; 99.9 1.5E-22 5.1E-27 174.3 6.2 62 2-63 1-62 (88)
61 4a5u_B 30S ribosomal protein S 99.9 1.6E-22 5.4E-27 174.0 5.7 62 2-63 1-62 (88)
62 3bbn_O Ribosomal protein S15; 99.7 6.6E-19 2.2E-23 151.5 3.4 56 8-63 3-60 (90)
63 1y14_B B16, RPB7, DNA-directed 99.7 3.8E-19 1.3E-23 174.9 -0.6 143 598-754 4-164 (171)
64 1go3_E DNA-directed RNA polyme 99.7 2E-18 7E-23 172.2 1.5 131 619-755 8-167 (187)
65 2b8k_G B16, DNA-directed RNA p 99.7 1.6E-18 5.5E-23 175.6 -2.0 143 598-754 4-164 (215)
66 1luz_A Protein K3, protein K2; 99.6 3E-16 1E-20 137.1 6.7 73 681-755 7-83 (88)
67 2c35_B Human RPB7, DNA-directe 99.6 2.6E-17 9E-22 161.9 -2.8 141 600-754 6-164 (172)
68 1kl9_A Eukaryotic translation 99.6 1.3E-15 4.6E-20 150.4 8.9 73 683-755 13-88 (182)
69 2k52_A Uncharacterized protein 99.6 3.8E-15 1.3E-19 127.9 9.9 70 682-755 2-72 (80)
70 2khj_A 30S ribosomal protein S 99.6 1.5E-15 5.1E-20 138.2 7.8 85 671-755 17-102 (109)
71 2k4k_A GSP13, general stress p 99.6 3.3E-15 1.1E-19 140.1 9.1 74 681-754 3-77 (130)
72 2eqs_A ATP-dependent RNA helic 99.6 3.6E-15 1.2E-19 134.2 8.3 75 680-755 7-85 (103)
73 2a19_A EIF-2- alpha, eukaryoti 99.6 4.5E-15 1.6E-19 145.9 9.2 72 684-755 14-88 (175)
74 1whu_A Polynucleotide phosphor 99.5 4.5E-14 1.5E-18 127.2 12.8 94 295-389 7-103 (104)
75 2khi_A 30S ribosomal protein S 99.5 6.4E-15 2.2E-19 135.3 7.3 80 676-755 21-102 (115)
76 2cqo_A Nucleolar protein of 40 99.5 4.4E-15 1.5E-19 137.1 5.8 79 677-755 14-96 (119)
77 3h0g_G DNA-directed RNA polyme 99.4 1.2E-15 4E-20 150.1 -8.1 142 601-754 7-165 (172)
78 1q8k_A Eukaryotic translation 99.4 2.6E-13 8.8E-18 144.3 9.2 73 683-755 11-86 (308)
79 3aev_A Translation initiation 99.4 3.4E-13 1.2E-17 141.5 9.8 73 683-755 9-84 (275)
80 3go5_A Multidomain protein wit 99.4 5.9E-13 2E-17 140.6 10.5 73 675-755 142-216 (285)
81 4ayb_E DNA-directed RNA polyme 99.4 6.7E-14 2.3E-18 138.6 0.6 78 677-755 73-166 (180)
82 3cw2_C Translation initiation 99.3 4.1E-13 1.4E-17 140.5 3.8 74 682-755 8-84 (266)
83 1wi5_A RRP5 protein homolog; S 99.3 3.1E-12 1.1E-16 118.0 6.1 75 681-755 17-94 (119)
84 3psi_A Transcription elongatio 99.2 1.6E-11 5.5E-16 150.4 8.5 74 681-754 898-973 (1219)
85 3m7n_A Putative uncharacterize 99.2 3.8E-11 1.3E-15 118.6 8.3 69 682-755 55-133 (179)
86 3bzc_A TEX; helix-turn-helix, 99.2 6.8E-12 2.3E-16 148.2 3.1 75 681-755 650-725 (785)
87 2nn6_I 3'-5' exoribonuclease C 99.1 4.9E-11 1.7E-15 120.4 8.2 74 682-755 78-162 (209)
88 3h36_A Polyribonucleotide nucl 99.1 8.8E-11 3E-15 103.5 8.8 85 296-381 4-93 (93)
89 3psf_A Transcription elongatio 99.1 6.8E-12 2.3E-16 151.6 0.0 75 681-755 901-977 (1030)
90 2cpq_A FragIle X mental retard 99.1 1.9E-11 6.6E-16 106.3 1.5 69 615-683 12-82 (91)
91 2ctk_A Vigilin; K homology typ 99.0 5.5E-11 1.9E-15 107.0 2.4 78 605-683 4-85 (104)
92 2je6_I RRP4, exosome complex R 99.0 3.2E-10 1.1E-14 117.6 7.3 74 682-755 71-147 (251)
93 2ba0_A Archeal exosome RNA bin 99.0 1.4E-09 4.7E-14 111.4 9.5 74 682-755 54-128 (229)
94 2z0s_A Probable exosome comple 98.9 1.3E-09 4.4E-14 112.2 7.2 74 682-755 63-140 (235)
95 2e3u_A PH-DIM2P, hypothetical 98.8 7.7E-10 2.6E-14 112.2 1.2 77 604-680 20-101 (219)
96 3go5_A Multidomain protein wit 98.8 3E-08 1E-12 104.7 11.5 68 682-754 66-135 (285)
97 2ctj_A Vigilin; K homology typ 98.7 2.8E-09 9.4E-14 94.1 1.1 66 619-685 18-88 (95)
98 1vig_A Vigilin; RNA-binding pr 98.7 6.2E-09 2.1E-13 86.9 3.0 60 619-679 6-69 (71)
99 1we8_A Tudor and KH domain con 98.7 6.6E-09 2.3E-13 93.4 3.1 74 607-681 4-85 (104)
100 2id0_A Exoribonuclease 2; RNAs 98.7 5.1E-08 1.7E-12 114.2 11.4 94 661-754 531-643 (644)
101 2bh8_A 1B11; transcription, mo 98.6 1.1E-08 3.8E-13 91.4 3.7 68 646-723 29-99 (101)
102 2opv_A KHSRP protein; KH domai 98.6 2E-08 6.9E-13 86.8 4.1 63 618-681 14-84 (85)
103 3j20_Q 30S ribosomal protein S 98.6 2.1E-08 7.1E-13 94.5 3.4 39 25-63 91-129 (158)
104 3ayh_B DNA-directed RNA polyme 98.6 8.3E-08 2.8E-12 96.5 8.0 65 680-745 76-159 (203)
105 2ctm_A Vigilin; K homology typ 98.5 2.7E-08 9.4E-13 87.8 2.6 66 618-684 17-87 (95)
106 2ckz_B C25, DNA-directed RNA p 98.5 1.2E-07 4.1E-12 96.2 7.2 66 680-745 76-155 (218)
107 2ctl_A Vigilin; K homology typ 98.5 4.2E-08 1.4E-12 87.0 2.8 65 618-683 17-88 (97)
108 2bx2_L Ribonuclease E, RNAse E 98.5 2E-07 6.8E-12 105.2 8.5 64 682-745 42-116 (517)
109 2wp8_J Exosome complex exonucl 98.4 2.4E-07 8.3E-12 112.5 8.6 71 683-754 885-977 (977)
110 2cte_A Vigilin; K homology typ 98.4 6.1E-08 2.1E-12 85.4 2.2 65 618-683 17-85 (94)
111 2vnu_D Exosome complex exonucl 98.4 3.4E-07 1.2E-11 109.0 8.5 71 683-754 668-760 (760)
112 2hh3_A KH-type splicing regula 98.4 1.2E-07 4E-12 85.4 2.6 72 614-686 7-84 (106)
113 1hh2_P NUSA, N utilization sub 98.3 3.6E-07 1.2E-11 98.2 6.1 68 680-754 127-199 (344)
114 2nn6_H Exosome complex exonucl 98.3 3E-07 1E-11 97.6 4.8 74 682-755 92-175 (308)
115 1x4m_A FAR upstream element bi 98.3 2.4E-07 8.2E-12 81.6 3.1 68 618-686 15-90 (94)
116 2ja9_A Exosome complex exonucl 98.3 1.5E-06 5.3E-11 85.0 8.4 70 682-752 4-74 (175)
117 2yqr_A KIAA0907 protein; struc 98.3 1.9E-07 6.3E-12 85.6 1.7 57 627-683 28-100 (119)
118 1k1g_A SF1-BO isoform; splicin 98.3 4E-07 1.4E-11 84.9 3.6 63 620-682 9-99 (131)
119 2axy_A Poly(RC)-binding protei 98.2 3.8E-07 1.3E-11 76.4 2.3 64 617-681 4-71 (73)
120 2jvz_A KH type-splicing, FAR u 98.2 9.5E-07 3.2E-11 85.3 4.3 93 593-686 63-164 (164)
121 2p2r_A Poly(RC)-binding protei 98.1 6E-07 2.1E-11 75.7 1.9 63 618-681 5-73 (76)
122 1wvn_A Poly(RC)-binding protei 98.1 6.8E-07 2.3E-11 76.5 2.0 63 618-681 6-74 (82)
123 1x4n_A FAR upstream element bi 98.1 1.1E-06 3.6E-11 77.1 2.8 67 617-684 14-86 (92)
124 1zzk_A Heterogeneous nuclear r 98.1 1.7E-06 5.8E-11 74.1 3.8 65 618-683 7-77 (82)
125 2hh2_A KH-type splicing regula 98.1 1.8E-06 6.3E-11 77.7 3.7 64 619-683 8-80 (107)
126 1dtj_A RNA-binding neurooncolo 98.0 1.8E-06 6.1E-11 72.7 2.9 61 619-680 4-73 (76)
127 1j5k_A Heterogeneous nuclear r 98.0 1.5E-06 5E-11 75.7 1.5 65 618-683 14-84 (89)
128 3krm_A Insulin-like growth fac 98.0 4.5E-06 1.5E-10 80.6 5.0 89 591-684 61-158 (163)
129 1ec6_A RNA-binding protein NOV 97.9 2.8E-06 9.5E-11 73.6 1.7 63 619-682 4-75 (87)
130 2jzx_A Poly(RC)-binding protei 97.8 1.2E-05 4E-10 77.5 4.6 88 594-682 63-159 (160)
131 1k0r_A NUSA; two component arr 97.8 2.9E-05 1E-09 83.7 6.9 71 678-754 121-203 (366)
132 2dgr_A Ring finger and KH doma 97.7 1.3E-05 4.5E-10 68.7 2.7 61 619-680 11-74 (83)
133 2asb_A Transcription elongatio 97.4 0.00017 6E-09 73.7 6.9 66 683-754 5-80 (251)
134 2nn6_G Exosome complex exonucl 97.4 0.00022 7.4E-09 75.0 7.5 71 682-753 124-194 (289)
135 2jzx_A Poly(RC)-binding protei 97.3 4.9E-05 1.7E-09 73.0 1.6 66 615-681 2-71 (160)
136 2bl5_A MGC83862 protein, quaki 97.3 0.00011 3.7E-09 69.0 3.0 58 627-684 17-103 (140)
137 2jvz_A KH type-splicing, FAR u 97.3 0.00016 5.4E-09 69.6 4.3 65 619-684 3-75 (164)
138 3krm_A Insulin-like growth fac 97.2 0.00011 3.8E-09 70.7 2.7 65 617-682 2-73 (163)
139 1j4w_A FUSE binding protein; s 97.1 0.00034 1.2E-08 68.1 5.0 60 619-679 105-173 (174)
140 2anr_A Neuro-oncological ventr 97.1 0.00024 8.1E-09 69.5 3.6 64 618-682 104-175 (178)
141 1j4w_A FUSE binding protein; s 96.8 0.00029 1E-08 68.6 1.5 64 620-684 5-74 (174)
142 2bh8_A 1B11; transcription, mo 96.7 0.0026 8.9E-08 56.4 6.5 60 683-745 11-74 (101)
143 2anr_A Neuro-oncological ventr 96.6 0.00053 1.8E-08 67.0 1.7 63 620-683 8-79 (178)
144 1kl9_A Eukaryotic translation 96.2 9.4E-06 3.2E-10 79.9 -13.9 92 628-725 14-143 (182)
145 2r7d_A Ribonuclease II family 96.0 0.017 5.7E-07 65.0 9.4 60 682-753 400-460 (469)
146 2ctf_A Vigilin; K homology typ 95.9 0.0043 1.5E-07 55.1 3.2 65 618-683 27-93 (102)
147 2qnd_A FMR1 protein; KH domain 94.4 0.015 5.3E-07 54.7 2.3 63 620-683 69-143 (144)
148 1tua_A Hypothetical protein AP 94.2 0.018 6.2E-07 56.8 2.4 64 617-681 4-72 (191)
149 3n89_A Defective in GERM LINE 91.0 0.17 5.8E-06 54.8 4.7 85 589-680 163-259 (376)
150 3u5c_N S27A, YS15, 40S ribosom 90.3 0.13 4.4E-06 48.1 2.6 34 30-63 89-122 (151)
151 2e3u_A PH-DIM2P, hypothetical 90.0 0.12 4.1E-06 52.1 2.3 53 628-682 139-191 (219)
152 2rf4_A DNA-directed RNA polyme 89.9 0.46 1.6E-05 47.6 6.5 70 679-748 123-204 (214)
153 3d0f_A Penicillin-binding 1 tr 89.5 0.99 3.4E-05 39.8 7.7 60 680-739 28-93 (106)
154 3n89_A Defective in GERM LINE 87.8 0.24 8.3E-06 53.6 3.0 58 621-679 33-103 (376)
155 2qnd_A FMR1 protein; KH domain 87.7 0.27 9.1E-06 46.2 2.9 56 619-674 5-62 (144)
156 1tua_A Hypothetical protein AP 87.2 0.2 6.8E-06 49.3 1.7 52 628-681 108-159 (191)
157 3i4o_A Translation initiation 85.5 0.66 2.3E-05 38.9 3.8 63 687-753 14-78 (79)
158 2xzm_O RPS13E; ribosome, trans 83.0 0.59 2E-05 43.7 2.6 32 30-61 91-122 (153)
159 1h95_A CSD, Y-box binding prot 81.3 4.5 0.00015 33.7 7.3 62 686-748 6-70 (79)
160 2k5n_A Putative cold-shock pro 81.3 4 0.00014 33.6 6.9 51 689-747 3-56 (74)
161 2cqo_A Nucleolar protein of 40 80.1 1.1 3.9E-05 40.4 3.4 60 628-698 21-83 (119)
162 3i2z_B RNA chaperone, negative 79.4 4.8 0.00017 32.8 6.7 55 688-747 5-62 (71)
163 1luz_A Protein K3, protein K2; 79.0 1.7 5.9E-05 37.0 4.0 58 628-698 10-72 (88)
164 1wfq_A UNR protein; beta-barre 77.5 6.7 0.00023 33.5 7.3 60 683-748 13-74 (89)
165 3h8z_A FragIle X mental retard 76.8 3.6 0.00012 37.6 5.8 58 684-741 13-72 (128)
166 2yty_A Cold shock domain-conta 76.4 2.7 9.4E-05 35.9 4.6 53 684-742 14-68 (88)
167 2eqs_A ATP-dependent RNA helic 75.8 1.7 5.9E-05 38.1 3.2 60 628-698 11-76 (103)
168 2k52_A Uncharacterized protein 75.8 1.9 6.7E-05 35.7 3.4 48 640-699 13-62 (80)
169 3cam_A Cold-shock domain famil 74.1 14 0.00046 29.7 7.9 54 690-748 3-59 (67)
170 3bzc_A TEX; helix-turn-helix, 72.4 1.8 6.3E-05 51.3 3.3 71 624-705 649-723 (785)
171 2ytx_A Cold shock domain-conta 70.8 4.6 0.00016 35.1 4.7 51 685-741 15-67 (97)
172 1c9o_A CSPB, cold-shock protei 69.8 14 0.00046 29.6 7.0 53 689-747 2-57 (66)
173 3aqq_A Calcium-regulated heat 69.6 7.1 0.00024 36.6 6.0 53 685-743 59-114 (147)
174 1g6p_A Cold shock protein TMCS 68.4 5.5 0.00019 31.9 4.3 53 689-747 1-56 (66)
175 3a0j_A Cold shock protein; OB- 67.1 11 0.00038 30.8 6.0 50 689-743 2-54 (73)
176 1d7q_A Translation initiation 66.6 12 0.0004 34.9 6.7 63 686-753 30-94 (143)
177 1jjg_A M156R; beta barrel, S1 65.4 15 0.0005 31.4 6.4 68 681-751 28-98 (102)
178 2a19_A EIF-2- alpha, eukaryoti 65.4 4.6 0.00016 39.0 3.9 59 629-698 15-77 (175)
179 3v69_A Protein filia; RNA-bind 65.0 3.7 0.00013 37.9 2.9 59 621-680 59-122 (140)
180 3ts2_A Protein LIN-28 homolog 64.5 13 0.00044 34.8 6.7 54 687-744 8-71 (148)
181 2kcm_A Cold shock domain famil 64.4 9.9 0.00034 31.3 5.2 54 689-748 1-58 (74)
182 2k4k_A GSP13, general stress p 62.7 3.6 0.00012 37.6 2.5 51 640-698 15-67 (130)
183 3psi_A Transcription elongatio 61.4 4.9 0.00017 49.9 4.1 52 639-697 909-962 (1219)
184 2dgy_A MGC11102 protein; EIF-1 60.8 11 0.00036 33.7 5.1 64 683-752 12-78 (111)
185 3psf_A Transcription elongatio 60.4 4 0.00014 49.9 2.9 52 639-697 912-965 (1030)
186 3ulj_A LIN28B, DNA-binding pro 60.0 22 0.00074 30.4 6.7 52 688-743 8-69 (90)
187 1jt8_A EIF-1A, probable transl 58.4 3.1 0.00011 36.6 1.1 62 686-752 19-83 (102)
188 3m7n_A Putative uncharacterize 58.4 6 0.00021 38.2 3.3 44 645-695 69-124 (179)
189 2khj_A 30S ribosomal protein S 54.0 5.3 0.00018 35.1 2.0 62 628-700 30-93 (109)
190 2khi_A 30S ribosomal protein S 53.6 5.9 0.0002 35.3 2.2 52 640-698 38-91 (115)
191 2lss_A Cold shock-like protein 58.7 2.8 9.5E-05 34.2 0.0 51 688-742 4-57 (70)
192 1x65_A UNR protein; cell-free 53.2 5.2 0.00018 34.2 1.7 49 687-742 7-57 (89)
193 2nn6_I 3'-5' exoribonuclease C 50.4 22 0.00076 35.1 6.1 60 640-705 89-160 (209)
194 2oqk_A Putative translation in 50.3 14 0.00046 33.3 4.0 63 682-750 28-92 (117)
195 2ytv_A Cold shock domain-conta 46.5 12 0.00041 31.1 2.8 54 688-748 8-64 (79)
196 1wi5_A RRP5 protein homolog; S 44.1 22 0.00075 31.6 4.5 53 640-698 29-83 (119)
197 2z0s_A Probable exosome comple 40.2 16 0.00055 36.8 3.2 58 620-677 150-207 (235)
198 3aev_A Translation initiation 37.3 17 0.00059 37.5 2.9 59 629-698 11-73 (275)
199 1ah9_A IF1, initiation factor 37.0 19 0.00067 29.1 2.6 49 689-741 8-57 (71)
200 1q8k_A Eukaryotic translation 35.1 14 0.00048 38.8 1.9 59 629-698 13-75 (308)
201 2cxc_A NUSA; transcription ter 35.0 6.2 0.00021 36.9 -0.8 36 618-653 36-71 (144)
202 2ba0_A Archeal exosome RNA bin 31.4 17 0.00059 36.4 1.7 47 620-666 138-184 (229)
203 2nn6_G Exosome complex exonucl 30.2 14 0.00047 38.6 0.8 57 620-676 212-268 (289)
204 3cw2_C Translation initiation 30.0 13 0.00045 38.2 0.6 51 640-698 19-73 (266)
205 2jpp_A Translational repressor 28.5 32 0.0011 27.9 2.5 29 725-754 7-35 (70)
206 2ja9_A Exosome complex exonucl 28.3 24 0.00082 33.9 2.1 51 620-670 93-144 (175)
207 2bti_A Carbon storage regulato 26.4 37 0.0013 27.0 2.5 28 725-753 9-36 (63)
208 1vpz_A Carbon storage regulato 25.0 40 0.0014 27.6 2.5 29 724-753 18-46 (73)
209 1gut_A Mopii, molybdate bindin 23.8 99 0.0034 23.8 4.7 50 687-741 7-60 (68)
210 2nr5_A Hypothetical protein SO 23.3 1.2E+02 0.004 23.0 4.6 36 8-43 24-60 (67)
211 1y14_B B16, RPB7, DNA-directed 22.6 25 0.00085 33.4 1.0 58 640-698 91-152 (171)
212 2je6_I RRP4, exosome complex R 21.7 9.7 0.00033 38.8 -2.2 48 621-668 158-205 (251)
213 1fr3_A MOP, molybdate/tungstat 21.5 45 0.0015 25.7 2.2 50 687-741 7-59 (67)
No 1
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=4.3e-163 Score=1414.65 Aligned_cols=701 Identities=49% Similarity=0.830 Sum_probs=552.9
Q ss_pred ccCcccchhhhhhhhhccccceeeEeeeeCCeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCCCCCcceeeEE
Q psy3754 46 HIKDHHSRRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125 (755)
Q Consensus 46 ~~kd~~~~~~l~~~v~~r~~~~~~~~~~~~~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~~~~f~pl~v~ 125 (755)
|++.|||+- -||+.+++++++|||++++|||++|+||+|||++++|+|+|||||+++.+++++.||+||+|+
T Consensus 5 ~~~~~~~~~--------~~~~~~~~~~~~~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g~df~pltve 76 (726)
T 4aid_A 5 HHHHHHSQD--------PMFDIKRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVN 76 (726)
T ss_dssp -------CC--------CCCCEEECCCEETTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTTCCSCCEEEE
T ss_pred ccccccccC--------cccCcEEEEEEECCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCCCCCcCceee
Confidence 555566643 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCCCCCcccccCCCCchhhHHHHHhcCcccccccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCC
Q psy3754 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE 205 (755)
Q Consensus 126 y~e~~~a~g~ip~~~~kReg~p~~~e~l~sRlIdr~lrpl~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~ 205 (755)
|+||+||+|+|||||+||||+|+++++|++|||||+|||+||++|++++||+|+||++||+++|+++||||||+||++|+
T Consensus 77 Y~ek~~a~G~iPg~~~~REGrps~~~~li~RlIdR~lRplf~~~~~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~ 156 (726)
T 4aid_A 77 YQEKTFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDILGMVAASAALCLSG 156 (726)
T ss_dssp EEECGGGGTCCCCSTTCSCCSCCHHHHHHHHHHHHHHGGGBCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHT
T ss_pred eeeehhhcccCCCcccCCCCCCCchhhhHHHHhCCccccccccCCccceEEEEEEEecCCCCChhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEEECCEEEEcCCHHHHhcCcccEEEEeecCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3754 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINEL 285 (755)
Q Consensus 206 IP~~~~vaav~vg~~~g~~vldPt~~E~~~s~~~l~va~~~~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~ 285 (755)
|||++|||||+||++||++|+|||++|++.|++||+|+||+++++|+|+++++||+++|.+||++||++|++++++|+++
T Consensus 157 iP~~~~vaaV~Vg~i~g~~vldPt~~E~~~s~~dl~va~t~~~i~mve~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~ 236 (726)
T 4aid_A 157 APFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDL 236 (726)
T ss_dssp CSBCCCCEEEEEEEETTEEEESCCHHHHHTCSEEEEEEECSSCEEEEEEEESSBCHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCcCCCeEEEEEEEECCEEEECCCHHHHhhCceeEEEEEeCCeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhcccC-C-cCChhhHHHHHHH
Q psy3754 286 VQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN-L-TIDINDINCILYD 363 (755)
Q Consensus 286 ~~~~~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 363 (755)
++++||+|++|.++ .+++|.+.+++++.++|++++.+++|++|+++++++++++.++|.++.. + +....++..+|++
T Consensus 237 ~~~~g~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (726)
T 4aid_A 237 AEHAAKEPFAFEPE-DTDAIKAKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALGLSDENPTGYDPLKLGAIFKE 315 (726)
T ss_dssp HHHHCCCCCCCCCC-TTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTCCTTSSCCCCSSSHHHHHHH
T ss_pred HHHhCCCcccCCCC-CCHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhccccccccHHHHHHHHHH
Confidence 99999999999988 9999999999999999999999999999999999999999999976431 1 1345689999999
Q ss_pred HHHHHHHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEE
Q psy3754 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLH 443 (755)
Q Consensus 364 ~~~~~~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~ 443 (755)
++++.+|++++++|+|+|||.++|+|||+|++|+++++||||+|++|+|||+|+||+||....+..|.+.+++.++|++|
T Consensus 316 ~~~~~~r~~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~ 395 (726)
T 4aid_A 316 LEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLH 395 (726)
T ss_dssp HHHHHHHHHHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEE
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998888777777789999999
Q ss_pred eecCCCCcccccCCCCCChhHHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCccc
Q psy3754 444 YNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISE 523 (755)
Q Consensus 444 ~~f~p~s~~e~~~~g~~~~rei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~ 523 (755)
|+|+|||++++++.|+|++|+++|+++++|+|+++++..++|||+|+|+++||++|||++|||+||+++||+|||+||++
T Consensus 396 y~~~P~st~er~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~ 475 (726)
T 4aid_A 396 YNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVR 475 (726)
T ss_dssp EECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSS
T ss_pred EEeCCCcccccccCCCcchhhHHHHHHHHHHHHHhcCccccCCeEEEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999997789999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHh
Q psy3754 524 HVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603 (755)
Q Consensus 524 ~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~ 603 (755)
+|+|+|||++++++++.+|+||++.||+.++|+|+|+++.+|||++|++++.++++.++|.+||++|++++.+|++.|++
T Consensus 476 ~VaavsvGli~~g~~~~iLlD~~~~Ed~~gd~d~~Va~t~~gIt~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~ 555 (726)
T 4aid_A 476 PVSGIAMGLILEQDGFAVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNK 555 (726)
T ss_dssp CCEEEEEEEEECSSCEEEEESCCTTGGGGSSEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeeEEEEEEEcCCCceEEEecCChhHHhcCCceEEEEecCCceEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeecCceeEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 604 ~l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
++..++.++++|+|++.+++|||+||+++||||||+||+|+++||++|||+++|.|.|++.+..++++|+++|+.+..++
T Consensus 556 al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 556 AMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp TCSSCCSSCCSSCCC-------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred HHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCcEEEEEeC
Q psy3754 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSMIY 755 (755)
Q Consensus 684 ~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gki~LS~k~ 755 (755)
++|++|+|+|++|++||+||+|.++++||||+|+++|+|+.+++++|++||.|+|||+++|++|||+||+|.
T Consensus 636 ~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~grI~LS~K~ 707 (726)
T 4aid_A 636 EVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKV 707 (726)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCcEEEEEee
Confidence 999999999999999999999999999999999999999999999999999999999999998999999984
No 2
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=2.7e-158 Score=1382.38 Aligned_cols=691 Identities=55% Similarity=0.924 Sum_probs=501.6
Q ss_pred ccceeeEeeeeCCeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCCCCCcceeeEEeEeeccccCCCCCCcccc
Q psy3754 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKR 143 (755)
Q Consensus 64 ~~~~~~~~~~~~~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~~~~f~pl~v~y~e~~~a~g~ip~~~~kR 143 (755)
||+...+++++|||++++|||++|+||||||++++|+|+|||||+++.+|+++.||+||+|+|+|++||+|+|||||+||
T Consensus 7 ~~~~~~~~~~~~~r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~~~f~pltv~y~ek~~a~g~ipg~f~kR 86 (723)
T 3cdi_A 7 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRR 86 (723)
T ss_dssp -CCCEEEEEEETTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSSCCSCCEEEEEEECGGGGTCCCC-----
T ss_pred ccceEEEEEEECCEEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCCCCeeeEEEEEeEeccccccCCCccccC
Confidence 56777789999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHhcCcccccccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCE
Q psy3754 144 EGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK 223 (755)
Q Consensus 144 eg~p~~~e~l~sRlIdr~lrpl~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~ 223 (755)
||+|+++|+|++|+|||+|||+||++|+|++||+|+|||+||+++|+++||||||+||++|+|||++|++|||||++||+
T Consensus 87 eGrpse~e~l~sRlIdR~lRplfp~~~~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i~g~ 166 (723)
T 3cdi_A 87 EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ 166 (723)
T ss_dssp --CCCHHHHHHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEETTE
T ss_pred CCCCChHHhHHHHHhCccchhcccccCcceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHhcCcccEEEEeecCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCh
Q psy3754 224 YILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303 (755)
Q Consensus 224 ~vldPt~~E~~~s~~~l~va~~~~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~ 303 (755)
+|+|||++|++.|++||+|+|++++++|+|++++++|+++|++||++||+++++++++|+++++++||+|++|.++..++
T Consensus 167 ~v~nPt~~e~~~s~~~lvvagt~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (723)
T 3cdi_A 167 YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 246 (723)
T ss_dssp EEESCCTTGGGGCSEEEEEEECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCCCCCCCCCCCT
T ss_pred EEECcCHHHHHhCCceEEEEccCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhcccCCcCChhhHHHHHHHHHHHHHHHHHHccCCcCCCC
Q psy3754 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNR 383 (755)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~R~DGR 383 (755)
+|.+.+++++.++|++++.+++|++|+++++++++++.++|.+++ ++....++..+|++++++.+|++++++|+|+|||
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~vr~~i~~~g~R~DGR 325 (723)
T 3cdi_A 247 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAED-ETLDENELGEILHAIEKNVVRSRVLAGEPRIDGR 325 (723)
T ss_dssp TGGGSSTTTTHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHTTCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhc-ccccHHHHHHHHHHHHHHHHHHHHhccCcCCCCC
Confidence 999999999999999999999999999999999999999995432 1234678999999999999999999999999999
Q ss_pred CCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCcccccCCCCCChh
Q psy3754 384 GVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRR 463 (755)
Q Consensus 384 ~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~e~~~~g~~~~r 463 (755)
.++|+|||+|++|++|++||||+|++|+|||+|+||+||.++.+.+|++.+++.++|++||+|+|||++++++.|.|++|
T Consensus 326 ~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~st~e~~r~g~p~~R 405 (723)
T 3cdi_A 326 EKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRR 405 (723)
T ss_dssp CTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCCCC-----C
T ss_pred CccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCCccccccCCCCCHH
Confidence 99999999999999999999999999999999999999998888888887788999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEEEEEEecCceEEEEe
Q psy3754 464 EIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543 (755)
Q Consensus 464 ei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs~gli~~~~~~~vL~ 543 (755)
|++|+++++|+|+++++++++|||+|+|+++||++|||++|||+||+++||+||||||+++|+|++||++++|++|.+|+
T Consensus 406 Ei~~~~li~raL~~vI~~~~~~p~tI~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs~gli~~g~~~~iL~ 485 (723)
T 3cdi_A 406 EIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 485 (723)
T ss_dssp TTHHHHHHHHHHHTTSCCSSSSCSCEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEETTEEEEES
T ss_pred HHHHHHHHHHHHHHhcCcccCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeEEEEEEcCCCceEEEE
Confidence 99999999999999999888999999999999999999999999999999999999999999999999998777789999
Q ss_pred cCCccccccCCccEEEEeecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccCCCceeEEe
Q psy3754 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIK 623 (755)
Q Consensus 544 Dp~~~Ee~~gd~~~~Va~t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~r~~~~~~~P~~~~~~ 623 (755)
||++.||+.++|+|+|++|.+|||++|++++.++++.++|.+|+++|++++.+|++.|++++..++.++++|+|++.+++
T Consensus 486 Dp~~~Ed~~~d~d~~Va~t~~gI~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~ 565 (723)
T 3cdi_A 486 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIK 565 (723)
T ss_dssp SCCGGGGGGCSEEEEEEECSSCEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------
T ss_pred CCChHHhhhccceeeecccCCceEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEE
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeeccccceeeeeccccceEEeecCceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEeeeEEE
Q psy3754 624 IDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAII 703 (755)
Q Consensus 624 i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~fG~FV 703 (755)
|||+||+++||||||+|+.|+++||++|||+++|.++|++.++..+++++++++.+..++++|++|+|+|++|++||+||
T Consensus 566 i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFV 645 (723)
T 3cdi_A 566 INPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 645 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECHHHhcccccccceeeeeeehhhCceEEecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCcEEEEEeC
Q psy3754 704 RILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSMIY 755 (755)
Q Consensus 704 el~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gki~LS~k~ 755 (755)
+|.++.+||||+|+++|+|+.+++++|++||+|+|||+++|.+|||+||+|.
T Consensus 646 el~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~ 697 (723)
T 3cdi_A 646 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 697 (723)
T ss_dssp ----------------------------------------------------
T ss_pred EeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCcEEEEEEe
Confidence 9999999999999999999999999999999999999999988999999973
No 3
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=4.2e-156 Score=1367.53 Aligned_cols=685 Identities=39% Similarity=0.653 Sum_probs=593.0
Q ss_pred eeEeeeeCCeeEEEEeCccCcCCCcEEEEEE-CCeEEEEEEEecCCCCCCCCcceeeEEeEeeccccCCCCCCcccccCC
Q psy3754 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSI-EDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGK 146 (755)
Q Consensus 68 ~~~~~~~~~r~i~~e~G~la~~A~GSa~v~~-G~T~Vl~tv~~~~~~~~~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~ 146 (755)
..+++++|||++++|||++|+||+|||++++ |+|+|||||+++++++++.||+||+|+|+||+||+|||||||+||||+
T Consensus 28 ~~~~~~~~~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~~df~pLtv~y~ek~~a~g~iPg~f~~REGr 107 (757)
T 1e3p_A 28 VIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGKIPGSFFRREGR 107 (757)
T ss_dssp EEECGGGCEEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTTCSSCCEEEEEEECGGGGTCCCCSTTSSCCS
T ss_pred EEEEEEECCEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCCCCCccEEEEEEecccccccCCCcccccCcC
Confidence 4578889999999999999999999999999 999999999999998888999999999999999999999999999999
Q ss_pred CCchhhHHHHHhcCcccccccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEE
Q psy3754 147 PSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYIL 226 (755)
Q Consensus 147 p~~~e~l~sRlIdr~lrpl~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~~vl 226 (755)
|+++|+|++|||||+|||+||++|++++||+|+||++||+++|+++||||||+||++|+|||++||||||||++||++|+
T Consensus 108 ps~~e~l~~RlIdR~LRplfp~~~~~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~~g~~vl 187 (757)
T 1e3p_A 108 PSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVA 187 (757)
T ss_dssp CCHHHHHHHHHHHHHHGGGBCTTBCEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEETTEEEE
T ss_pred CChHHHHHHHHHCCcchhccccCCCCceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHhcCcccEEEEee-----cCceEEEEc------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3754 227 NPTTEQLKKSHLDLLVAGT-----EKAIITVES------------ESKQLPEDIILNAIIFGHEKMKIAINAINELVQNV 289 (755)
Q Consensus 227 dPt~~E~~~s~~~l~va~~-----~~~i~mie~------------~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~ 289 (755)
|||++|++.|++||+|+|| +++|+|+|+ +++++|+++|.+||++||++|++++++|+++++++
T Consensus 188 nPt~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~~se~~l~~al~~a~~~i~~l~~~q~~~~~~~ 267 (757)
T 1e3p_A 188 FPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKA 267 (757)
T ss_dssp SCCHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhcCceeEEEEeccccCCCCcEEEEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 778999999 78899999999999999999999999999999999
Q ss_pred CCCcccCCC-CCCChhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhcccCCcCChhhHHHHHHHHHHHH
Q psy3754 290 GQKKVNWDP-IVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKI 368 (755)
Q Consensus 290 ~~~k~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (755)
||+|++|.+ +..+++|.+.|++++.++|++++.+++|++|+++++++++++.++|.+++ +....++..+|++++++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~ 345 (757)
T 1e3p_A 268 AKPTGEFPVFLDYQDDVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEF--EGREKEISAAYRALTKSL 345 (757)
T ss_dssp CCCCCCCCBCCSCCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHTTSTTTT--CSCHHHHHHHHHHHHHHH
T ss_pred CCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhc--cccHHHHHHHHHHHHHHH
Confidence 999999988 67889999999999999999999999999999999999999999985432 234678999999999999
Q ss_pred HHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCC
Q psy3754 369 IRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPP 448 (755)
Q Consensus 369 ~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p 448 (755)
+|++++++|+|+|||.++|+|||+|++|++|++||||+|++|+|||||+||+||.+..+..|.+.+++.++|++||+|+|
T Consensus 346 ~r~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P 425 (757)
T 1e3p_A 346 VRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPP 425 (757)
T ss_dssp HHHHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCG
T ss_pred HHHHHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999998888888777788999999999999
Q ss_pred CCcccccCCCCCChhHHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEE
Q psy3754 449 FATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGI 528 (755)
Q Consensus 449 ~s~~e~~~~g~~~~rei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~v 528 (755)
||++++++.|+|++|+++|+++++|+|+++++..++|||+|+|+++||++|||++|||+||+++||+|||+||+++|+|+
T Consensus 426 ~st~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaav 505 (757)
T 1e3p_A 426 YSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGI 505 (757)
T ss_dssp GGGTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEE
T ss_pred cccccccCCCCCchhHHHHHHHHHHHHHHhccccccCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceEEE
Confidence 99999998899999999999999999999999668999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC-c---eEEEEecCCccccccCCccEEEEeecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhh
Q psy3754 529 AMGLIKDG-E---KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604 (755)
Q Consensus 529 s~gli~~~-~---~~~vL~Dp~~~Ee~~gd~~~~Va~t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~ 604 (755)
|||+++++ + +|.+|+||++.||+.++|+|+|+++.+|||++|++++.++++.++|.+||++|+.++.+|++.|+++
T Consensus 506 s~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~a 585 (757)
T 1e3p_A 506 AMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEA 585 (757)
T ss_dssp EEEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEEECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCccceeEEeCCCHHHHhccCceEEEEecCCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999654 3 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeecCceeEEEEecChhhhHHHHHHHHHhh--hc
Q psy3754 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLT--ES 682 (755)
Q Consensus 605 l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~~~~a~~~i~~~~--~~ 682 (755)
+..+ .++++|+|++.+++|||+||+++||||||+||.|+++||++|+|+++|.++|++.++...++++++++.+. .+
T Consensus 586 l~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~v~Is~~~~~~~~~a~~~i~~i~~p~~ 664 (757)
T 1e3p_A 586 IDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTS 664 (757)
T ss_dssp CSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC--------CCCBSSHHHHCC-------------
T ss_pred hccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecCCceEEEecCCHHHHHHHHHHHHHhcchhh
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999998898888 88
Q ss_pred ccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEecccc----CcccccCcccccCCCCEEEEEEEEEcCCCcEEEEEeC
Q psy3754 683 VQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI----SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSMIY 755 (755)
Q Consensus 683 ~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel----~~~~~~~~~~~~kvGd~V~VkV~~id~~gki~LS~k~ 755 (755)
+++|++|+|+|++|++||+||+|.+|++||||+|++ +|+|+.+++++|++||+|+|||+++|++|||+||+|.
T Consensus 665 ~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~ 741 (757)
T 1e3p_A 665 PEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLIPVI 741 (757)
T ss_dssp --------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCSSCC-------
T ss_pred cccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCCEEEEEec
Confidence 999999999999999999999999999999999999 9999999999999999999999999989999999974
No 4
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=4.6e-138 Score=1195.85 Aligned_cols=609 Identities=37% Similarity=0.612 Sum_probs=577.0
Q ss_pred eeEeeeeCCeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCCCCCcceeeEEeEeeccccCCCCCCcccccCCC
Q psy3754 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKP 147 (755)
Q Consensus 68 ~~~~~~~~~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p 147 (755)
..+++++|||++++|||++|+||||||++++|||+|||||+++++++++ +|+||+|+|++++||+|+|||||+||||+|
T Consensus 6 ~~~~~~~~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~-df~pL~v~y~~~~~a~g~iPg~f~kRegrp 84 (630)
T 3u1k_A 6 SAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAGRIPTNYLRREVGT 84 (630)
T ss_dssp EEEEEECSSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS-SSCCEEEEEECSEETTTTEECTTC-----C
T ss_pred eeEEEEECCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCC-CeeEEEEEEEecccccCCCCccccccCCCC
Confidence 4578889999999999999999999999999999999999999988877 999999999999999999999999999999
Q ss_pred CchhhHHHHHhcCcccccccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEc
Q psy3754 148 SERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILN 227 (755)
Q Consensus 148 ~~~e~l~sRlIdr~lrpl~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~~vld 227 (755)
+++|+|++|+|||+|||+||++|+|++||+|+||++||+++|+++||||||+||++|||||++||+||+||++||++|+|
T Consensus 85 s~~e~lisRlIdR~lRp~~~~~~~~~~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i~g~~vld 164 (630)
T 3u1k_A 85 SDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVN 164 (630)
T ss_dssp CHHHHHHHHHHHHHHGGGSCTTCCCCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEETTEEEES
T ss_pred CHHHHHHHHHHhHHhhhcccccCCCceEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEECCEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcCcccEEEEeecCc-eEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC-CChhH
Q psy3754 228 PTTEQLKKSHLDLLVAGTEKA-IITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIV-KDKTL 305 (755)
Q Consensus 228 Pt~~E~~~s~~~l~va~~~~~-i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~k~~~~~~~-~~~~l 305 (755)
||++|++.|++||+|++++++ |+|+|++++++|+++|.+||++||++|++++++|+++++++||+|++|.+.. .+++|
T Consensus 165 Pt~~E~~~s~~dl~Va~t~~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (630)
T 3u1k_A 165 PTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEI 244 (630)
T ss_dssp CCHHHHHTEEEEEEEEEETTTEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCCCCCCHHH
T ss_pred CCHHHHhhCCceEEEEEccCCcEEEEECCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCCCCCHHH
Confidence 999999999999999999875 9999999988999999999999999999999999999999999999997655 88999
Q ss_pred HHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhhcccCCcCChhhHHHHHHHHHHHHHHHHHHccCCcCCCC
Q psy3754 306 ISKIINISEHKIRKAYQI--KNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNR 383 (755)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~--~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~R~DGR 383 (755)
.+.+++++.++|++++.+ ++|++|+++++++++++.++|.++. ++....++..+|++++|+.+|++++++|+|+|||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~il~~g~R~DGR 323 (630)
T 3u1k_A 245 VKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKF-PEADPYEIIESFNVVAKEVFRSIVLNEYKRCDGR 323 (630)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHHHHHHSCCTTSC
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHhhhhc-CcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999986 8999999999999999999997653 3445678999999999999999999999999999
Q ss_pred CCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCcccccccc----ccCCcccEEEEEeecCCCCcccccCCCC
Q psy3754 384 GVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDA----LMGEFTDSFMLHYNMPPFATGDIGRIGV 459 (755)
Q Consensus 384 ~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~----~~~~~~~~~~~~~~f~p~s~~e~~~~g~ 459 (755)
.++|+|||+|++|+++++||||+|++|+|||+|+||+||..+.+..|. +.+++.++|++||+|+|||++++++.|+
T Consensus 324 ~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~ 403 (630)
T 3u1k_A 324 DLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTG 403 (630)
T ss_dssp CTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGGTCCCCCSS
T ss_pred CCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCCcccccccCCC
Confidence 999999999999999999999999999999999999878777776654 3467899999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEEEEEEec----
Q psy3754 460 PKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD---- 535 (755)
Q Consensus 460 ~~~rei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs~gli~~---- 535 (755)
|++||++|++|++|+|++++| .+|||+|+|+++||++|||++|||+||+++||+||||||+++|+|++||++++
T Consensus 404 ~~rREi~~~~Li~raLr~vi~--~~~p~tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Vaavs~gli~~~~~~ 481 (630)
T 3u1k_A 404 LNRRELGHGALAEKALYPVIP--RDFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPE 481 (630)
T ss_dssp CCHHHHHHHHHHHHHHGGGSC--TTCSSEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECSS
T ss_pred CChHHHHHHHHHHHHHHhhCc--ccCCeEEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccceEEEEEEEecCCCcc
Confidence 999999999999999999999 57999999999999999999999999999999999999999999999999984
Q ss_pred -C--ceEEEEecCCccccccCCccEEEEeecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhcccccccc
Q psy3754 536 -G--EKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNEL 612 (755)
Q Consensus 536 -~--~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~r~~~ 612 (755)
+ ++|.+|+||++.||+.++|+|+|++|.+|||++|++++..+++.++|.+||++|++++.+|++.|++++..++.++
T Consensus 482 ~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~t~~gIt~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I~~~m~~al~~~~~~~ 561 (630)
T 3u1k_A 482 KGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPRASR 561 (630)
T ss_dssp SSCEEEEEEEESCCHHHHHTSSEEEEEEECSSCEEEEEEEECSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSC
T ss_pred cccccCceEEecCCHHHHhhCcceEEEEecCCceEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3 4689999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeecCceeEEEEecChhhhHHHHHHHHHhh
Q psy3754 613 SKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLT 680 (755)
Q Consensus 613 ~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~~~~a~~~i~~~~ 680 (755)
++|+|++++++|||+||+++||||||+||.|+++||++|+|+++|.|.|++.+...+++|+++|+.++
T Consensus 562 ~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 562 KENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred cccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999987653
No 5
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=7.2e-133 Score=1130.30 Aligned_cols=549 Identities=54% Similarity=0.929 Sum_probs=475.8
Q ss_pred ccceeeEeeeeCCeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCCCCCcceeeEEeEeeccccCCCCCCcccc
Q psy3754 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKR 143 (755)
Q Consensus 64 ~~~~~~~~~~~~~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~~~~f~pl~v~y~e~~~a~g~ip~~~~kR 143 (755)
||+++++++++|||++++|||++|+||+|||++++|+|+|||||+++.+++++.||+||+|+|+||+||+|+|||||+||
T Consensus 1 ~~~~~~~~~~~~~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g~df~Pltv~Y~e~~~a~G~iPg~~~~R 80 (549)
T 3gme_A 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRR 80 (549)
T ss_dssp CCCCEEEEEEETTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTTCCSCCEEEEEEECGGGTTCCCSCC---
T ss_pred CCCcEEEEEEECCEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCCCCCccceeeeeeehhhcccCCCcCcCc
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHhcCcccccccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCE
Q psy3754 144 EGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGK 223 (755)
Q Consensus 144 eg~p~~~e~l~sRlIdr~lrpl~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~ 223 (755)
||+|+++|+|++|||||+|||+||++|++++||+|+|||+||+++|+++||||||+||++|+|||++||+||+||++||+
T Consensus 81 EGrps~~~~l~~RlIdR~lRplfp~~~~~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i~g~ 160 (549)
T 3gme_A 81 EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ 160 (549)
T ss_dssp --CCCHHHHHHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEETTE
T ss_pred CCCCChhhhHHHHHhCCccccccccCCcccEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHhcCcccEEEEeecCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCh
Q psy3754 224 YILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303 (755)
Q Consensus 224 ~vldPt~~E~~~s~~~l~va~~~~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~ 303 (755)
+|+|||++|++.|++||+|+||+++++|+|+++++||+++|.+||++||+++++++++|+++++++||+|++|.++..++
T Consensus 161 ~vlnPt~~e~~~s~~dl~va~t~~~i~mve~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 240 (549)
T 3gme_A 161 YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 (549)
T ss_dssp EEESCCTTTTTTCSBCEEEEECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_pred EEECCCHHHHhhCceEEEEEecCCeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhcccCCcCChhhHHHHHHHHHHHHHHHHHHccCCcCCCC
Q psy3754 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNR 383 (755)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~R~DGR 383 (755)
+|.+.|++++.++|++++.+++|++|+++++++++++.++|.+++ ++....++..+|++++|+.+|++++++|+|+|||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~R~~il~~g~R~DGR 319 (549)
T 3gme_A 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAED-ETLDENELGEILHAIEKNVVRSRVLAGEPRIDGR 319 (549)
T ss_dssp HHHTTC--------------CCHHHHC------------------------------CCHHHHHHHHHHHHHTCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhc-ccccHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999997543 2334568999999999999999999999999999
Q ss_pred CCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCcccccCCCCCChh
Q psy3754 384 GVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRR 463 (755)
Q Consensus 384 ~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~e~~~~g~~~~r 463 (755)
.++|+|||+|++|+++++||||+|++|+|||+|+||+||.++.+.++++.+++.++|++||+|+|||++++++.|++++|
T Consensus 320 ~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~~R 399 (549)
T 3gme_A 320 EKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRR 399 (549)
T ss_dssp CTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTCCCCSSCCCSS
T ss_pred CCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCCcccCCCCChh
Confidence 99999999999999999999999999999999999999999888888887788999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEEEEEEecCceEEEEe
Q psy3754 464 EIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543 (755)
Q Consensus 464 ei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs~gli~~~~~~~vL~ 543 (755)
+++|+++++|+|+++|+++++|||+|+|+++||++|||+++||+||+++||+||||||+++|+|+|||+++++++|.+|+
T Consensus 400 eie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs~Gli~~g~~~~iL~ 479 (549)
T 3gme_A 400 EIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479 (549)
T ss_dssp HHHHHHHHHHHHTTTCCCTTTCCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCccccCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEEEEEEEcCCCceEEEe
Confidence 99999999999999999779999999999999999999999999999999999999999999999999999888899999
Q ss_pred cCCccccccCCccEEEEeecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhccccccccc
Q psy3754 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELS 613 (755)
Q Consensus 544 Dp~~~Ee~~gd~~~~Va~t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~r~~~~ 613 (755)
||++.||+.++|||+|++|.+|++++||+++++|++.++|.+||++|++++.+|++.|++++..||++++
T Consensus 480 D~~~~Ed~~~d~d~~Va~t~~gitalqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~pr~~~~ 549 (549)
T 3gme_A 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 549 (549)
T ss_dssp SCCHHHHHHSSEEEEEEECSSCEEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC----
T ss_pred cCChHHHccCCceEEEEecCCCeEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764
No 6
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=5.2e-45 Score=381.81 Aligned_cols=226 Identities=28% Similarity=0.440 Sum_probs=206.2
Q ss_pred HHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCcc
Q psy3754 373 ILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATG 452 (755)
Q Consensus 373 ~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~ 452 (755)
++.+|+|+|||.++|+|||++++|+++++||||+|++|+|+|+|+|+ ||.+.. ++....+++++|++||+|+|||++
T Consensus 11 ~i~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-gp~e~~--~~~~~~~~~g~l~~~~~~~P~s~~ 87 (258)
T 3m7n_D 11 LIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVF-GPREVH--PEHLQDPSKAIIRYRYNMAPFSVE 87 (258)
T ss_dssp SEETTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEE-EEEECS--SSTTCCSSSCEEEEEEEECGGGSS
T ss_pred HHhcCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEE-cccCCC--CccccCCCceEEEEEEEeCCcccc
Confidence 56699999999999999999999999999999999999999999997 986543 344556789999999999999998
Q ss_pred cccCCCCCChhHHHHHHHHHHhccccCCCCCCCceE-EEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEEEE
Q psy3754 453 DIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYS-IRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMG 531 (755)
Q Consensus 453 e~~~~g~~~~rei~~~~lieral~~vi~~~~~~p~t-I~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs~g 531 (755)
++++ +++++|+++++++++|+|++++++ +.||++ |+|+++||++|||+++|++||+++||+||||||+++|+++++|
T Consensus 88 ~r~~-~~~~~re~ei~~li~r~l~~~i~~-~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsvg 165 (258)
T 3m7n_D 88 ERKR-PGPDRRSIEISKVSKEAFEAVIMK-ELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVG 165 (258)
T ss_dssp SCCC-SSCCHHHHHHHHHHHHHHHTTBCG-GGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEEE
T ss_pred cccC-CCCCHHHHHHHHHHHHHHHhhcCH-HhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEE
Confidence 8654 679999999999999999999987 778765 9999999999999999999999999999999999999999999
Q ss_pred EEecCceEEEEecCCccccccCCccEEEEe-ec----CcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhcc
Q psy3754 532 LIKDGEKVVILSDILGDEDRCGDMDFKVAG-TV----NGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606 (755)
Q Consensus 532 li~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~-t~----~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~ 606 (755)
++++ .+|+||+..||+.++++|+|++ +. ++|+++|+++ +++.++|.+|+++|++++.+|++.|++++.
T Consensus 166 ~i~~----~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g---~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 238 (258)
T 3m7n_D 166 KADG----QLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDG---RMTRDEVKQAIELAKKGALQIYEMQREAIL 238 (258)
T ss_dssp EETT----EEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEE---EECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECC----EEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9965 5889999999999999999999 55 4599999985 689999999999999999999999999998
Q ss_pred cccc
Q psy3754 607 KCKN 610 (755)
Q Consensus 607 ~~r~ 610 (755)
.+..
T Consensus 239 ~~~~ 242 (258)
T 3m7n_D 239 RRYI 242 (258)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7543
No 7
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.2e-44 Score=376.15 Aligned_cols=227 Identities=30% Similarity=0.411 Sum_probs=202.5
Q ss_pred HHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCC
Q psy3754 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFA 450 (755)
Q Consensus 371 ~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s 450 (755)
++++++|+|+|||.++|+||+++++|+++++||||+|++|+|+|+|+|+ ||.+..+ ++...+++++++++|+|+|||
T Consensus 9 ~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-gp~e~~~--~~~~~~~~g~l~~~~~~~p~a 85 (240)
T 2wnr_B 9 QLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVY-GPREAQI--RKLQRPDRAVIRCRYNMAPFS 85 (240)
T ss_dssp ------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEE-EEEECCS--SSSCCSSSCEEEEEEEECTTS
T ss_pred EeecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEE-cCCCCCc--ccccCCCcEEEEEEEEeCCCC
Confidence 5689999999999999999999999999999999999999999999996 8876543 244567899999999999999
Q ss_pred cccccCCCCCChhHHHHHHHHHHhccccCCCCCCCce-EEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEE
Q psy3754 451 TGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY-SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIA 529 (755)
Q Consensus 451 ~~e~~~~g~~~~rei~~~~lieral~~vi~~~~~~p~-tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs 529 (755)
+++++ .+++++++++++++++|+|++++++ +.||+ +|+|+++||++|||+++|++||+++||+|||+||+++|++++
T Consensus 86 ~~~~~-~~~~~~~~~~l~~ll~r~l~~~i~l-~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs 163 (240)
T 2wnr_B 86 VEERK-RPGPDRRSVEISKITAEALRPALIL-EKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACA 163 (240)
T ss_dssp SSSCC-CSSCCHHHHHHHHHHHHHHGGGBCG-GGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEE
T ss_pred cCCcc-CCCCChhHHHHHHHHHHHHHHhcCH-HHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEE
Confidence 99876 6779999999999999999999987 67886 699999999999999999999999999999999999999999
Q ss_pred EEEEecCceEEEEecCCccccccCCccEEEEe-e-cCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhccc
Q psy3754 530 MGLIKDGEKVVILSDILGDEDRCGDMDFKVAG-T-VNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607 (755)
Q Consensus 530 ~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~-t-~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~ 607 (755)
+|++++ .+|+||+..||+.++++++|+. + .++++++|++++ ++.+++.+|+++|.+++.+|++.|++++.+
T Consensus 164 ~g~~~~----~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~---~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 236 (240)
T 2wnr_B 164 AGKVGD----QVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGN---LTPEEFERALDLAVEGCLRIHEVQKEALRK 236 (240)
T ss_dssp EEESSS----SEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEEC---BCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECC----EEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999976 4889999999999999999996 4 556999999864 899999999999999999999999999987
Q ss_pred cc
Q psy3754 608 CK 609 (755)
Q Consensus 608 ~r 609 (755)
+.
T Consensus 237 ~~ 238 (240)
T 2wnr_B 237 RY 238 (240)
T ss_dssp --
T ss_pred hh
Confidence 64
No 8
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=5.6e-45 Score=380.60 Aligned_cols=231 Identities=23% Similarity=0.339 Sum_probs=208.3
Q ss_pred HHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCC
Q psy3754 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFA 450 (755)
Q Consensus 371 ~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s 450 (755)
+.++++|+|+|||.++|+|||++++|+++++||||+|++|+|+|+|+|+ ||.+.. ..+....++.+++++||+++|||
T Consensus 9 ~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-g~~~~~-~~~~~~~~~~g~l~~~~~~~p~a 86 (249)
T 2nn6_B 9 ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY-GPHEIR-GSRARALPDRALVNCQYSSATFS 86 (249)
T ss_dssp --CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEE-EEEECC-SSSCCCCCSSCCEEEEEEECTTT
T ss_pred hhcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEE-ccCCcc-ccccccCCCcEEEEEEEEcCCCc
Confidence 5578999999999999999999999999999999999999999999997 885432 22122456789999999999999
Q ss_pred cccccCCCCCChhHHHHHHHHHHhccccCCCCCCCce-EEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEE
Q psy3754 451 TGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY-SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIA 529 (755)
Q Consensus 451 ~~e~~~~g~~~~rei~~~~lieral~~vi~~~~~~p~-tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs 529 (755)
++++++.+++++++++++++++|+|++++++ +.||+ +|+|+++||++|||+++|++||+++||+|||+||+++|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~-~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs 165 (249)
T 2nn6_B 87 TGERKRRPHGDRKSCEMGLQLRQTFEAAILT-QLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACS 165 (249)
T ss_dssp SSSCCCTTTSTHHHHHHHHHHHHHHHHTTCG-GGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEE
T ss_pred ccccccCCCCCHhHHHHHHHHHHHHHHhcCH-HHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEE
Confidence 9998888899999999999999999999997 67885 599999999999999999999999999999999999999999
Q ss_pred EEEEecCceEEEEecCCccccccCCccEEEEe--ecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhccc
Q psy3754 530 MGLIKDGEKVVILSDILGDEDRCGDMDFKVAG--TVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607 (755)
Q Consensus 530 ~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~--t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~ 607 (755)
+|++++ .+|+||+..||+.++++|+|+. +.++|+++|+++ .++.++|.+|+++|.+++.+|++.|++++.+
T Consensus 166 ~g~~~~----~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g---~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (249)
T 2nn6_B 166 AGFVDG----TALADLSHVEEAAGGPQLALALLPASGQIALLEMDA---RLHEDHLERVLEAAAQAARDVHTLLDRVVRQ 238 (249)
T ss_dssp EEEETT----EEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECS---CCBTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECC----eEEECCChHHhccCCcEEEEEEECCCCCEEEEEEEC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999965 6899999999999999999996 445699999974 5799999999999999999999999999998
Q ss_pred cccc
Q psy3754 608 CKNE 611 (755)
Q Consensus 608 ~r~~ 611 (755)
+.+.
T Consensus 239 ~~~~ 242 (249)
T 2nn6_B 239 HVRE 242 (249)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 9
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=3.4e-44 Score=374.67 Aligned_cols=228 Identities=30% Similarity=0.406 Sum_probs=209.0
Q ss_pred HHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCC
Q psy3754 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFA 450 (755)
Q Consensus 371 ~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s 450 (755)
++++++|+|+|||.++|+|||.+++|+++++||||+|++|+|+|+|+|+ ||.+.. +++...++.++++++|+++|||
T Consensus 9 ~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-gp~e~~--~~~~~~~~~g~l~v~~~~~p~a 85 (249)
T 2po1_A 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVY-GPRELH--PKHLQRPDRAILRVRYNMAPFS 85 (249)
T ss_dssp CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEE-EEEECS--SGGGCCSSSCEEEEEEEECGGG
T ss_pred EEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEE-cCcccC--cccccCCCceEEEEEEEeCCcc
Confidence 5588999999999999999999999999999999999999999999996 886543 3355667899999999999999
Q ss_pred cccccCCCCCChhHHHHHHHHHHhccccCCCCCCCce-EEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEE
Q psy3754 451 TGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY-SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIA 529 (755)
Q Consensus 451 ~~e~~~~g~~~~rei~~~~lieral~~vi~~~~~~p~-tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs 529 (755)
+++++ .+++++++++++++++|+|++++++ +.||+ +|+|+++||++|||+++|++||+++||+|+|+|++++|++++
T Consensus 86 ~~~~~-~~~~~~~~~~~s~li~r~l~~~i~l-~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs 163 (249)
T 2po1_A 86 VEERK-KPGPDRRSIEISKVIKGALEPALIL-EMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACA 163 (249)
T ss_dssp SSSCC-CSSCCHHHHHHHHHHHHHHGGGBCG-GGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEE
T ss_pred ccccc-CCCCCHHHHHHHHHHHHHHHhhccH-HHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEE
Confidence 99876 4569999999999999999999997 67895 799999999999999999999999999999999999999999
Q ss_pred EEEEecCceEEEEecCCccccccCCccEEEEe--ecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhccc
Q psy3754 530 MGLIKDGEKVVILSDILGDEDRCGDMDFKVAG--TVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607 (755)
Q Consensus 530 ~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~--t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~ 607 (755)
+|++++ .+|+||+..||+.++++++|+. +.++|+++|+++ +++.++|.+|+++|++++.+|++.|++++..
T Consensus 164 ~g~~~~----~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g---~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 236 (249)
T 2po1_A 164 AGKIEG----EIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236 (249)
T ss_dssp EEEETT----EEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEE---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECC----EEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999965 6889999999999999999997 456699999986 4899999999999999999999999999987
Q ss_pred ccc
Q psy3754 608 CKN 610 (755)
Q Consensus 608 ~r~ 610 (755)
+..
T Consensus 237 ~~~ 239 (249)
T 2po1_A 237 KYL 239 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 10
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=2.1e-43 Score=367.20 Aligned_cols=219 Identities=21% Similarity=0.232 Sum_probs=183.5
Q ss_pred cCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCccccc
Q psy3754 376 KGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIG 455 (755)
Q Consensus 376 ~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~e~~ 455 (755)
+|+|+|||.++|+|||++++|+++++||||+|++|+|+|+|+|+ ||.+..+.. ....+++++|+|+|+
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-g~~~~~~~~-----~~~~~~~~~~~~~P~------ 69 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVY-GPKPGTRKG-----ENPEKASIEVVWKPM------ 69 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEC-CCEECCCTT-----SCSSSCEEEEEEECS------
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEe-cCcCCCccc-----CCCccEEEEEEeCCC------
Confidence 68999999999999999999999999999999999999999997 886543322 234567889999983
Q ss_pred CCCCCChhHHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEEEEEEec
Q psy3754 456 RIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD 535 (755)
Q Consensus 456 ~~g~~~~rei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs~gli~~ 535 (755)
.|++++++++++++++|+|+++++.+..++|+|+|+++||++|||+++||+||+++||+|||+||+++|+|+++|++.+
T Consensus 70 -~g~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~ 148 (246)
T 3hkm_A 70 -TGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLED 148 (246)
T ss_dssp -SSCCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTT
T ss_pred -CCCCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEEC
Confidence 2468899999999999999999998555579999999999999999999999999999999999999999999999965
Q ss_pred CceEEEEecCCccccccCCccEEEEeecCcEEEEEeee---------------cccccCHHHHHHHHHHHHhhhHHHHHH
Q psy3754 536 GEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDI---------------KIFGITYDIIQIALYKAKKGLSYILEK 600 (755)
Q Consensus 536 ~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~gi~alq~~~---------------k~~~is~~~l~~al~~A~~~~~~I~~~ 600 (755)
+ .+|+||+..||..++++++|+++.+++|++|+++ ..++++.++|.+|+++|++++.+|++.
T Consensus 149 g---~~llDpt~~Ee~~~~~~~~va~~~~~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~ 225 (246)
T 3hkm_A 149 G---EVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDF 225 (246)
T ss_dssp S---CEEESCCHHHHTTCSEEEEEEEEC--------------------CCCEEEEECEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---EEEECCCHHHHhcCCeeEEEEEeCCceEEEeecccccccccccceeeeeccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4889999999999999999999999999999976 257899999999999999999999999
Q ss_pred HHhhcccccc
Q psy3754 601 MKTEVPKCKN 610 (755)
Q Consensus 601 ~~~~l~~~r~ 610 (755)
|+++++++.+
T Consensus 226 ~~~~l~~~~~ 235 (246)
T 3hkm_A 226 MRTTLQKQAP 235 (246)
T ss_dssp HHTTTC----
T ss_pred HHHHHHhhhh
Confidence 9999998643
No 11
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=6e-43 Score=365.55 Aligned_cols=227 Identities=29% Similarity=0.447 Sum_probs=208.0
Q ss_pred HHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCc
Q psy3754 372 QILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFAT 451 (755)
Q Consensus 372 ~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~ 451 (755)
.++++|+|+|||.++|+||+++++|+++++||||+|++|+|+|+|+|+ ||.+..+ ++...++.+.++++|+++|||+
T Consensus 14 ~~l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~-g~~e~~~--~~~~~~~~g~l~v~~~~~p~a~ 90 (250)
T 2je6_B 14 LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVY-GPKEMHP--RHLSLPDRAVLRVRYHMTPFST 90 (250)
T ss_dssp SBCTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEE-EEEECSS--GGGSCSSSCEEEEEEEECTTSS
T ss_pred eecCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEE-ccccccc--ccccCCCcEEEEEEEEeCCCcc
Confidence 368899999999999999999999999999999999999999999997 8865433 3445677999999999999999
Q ss_pred ccccCCCCCChhHHHHHHHHHHhccccCCCCCCCce-EEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEEE
Q psy3754 452 GDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY-SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAM 530 (755)
Q Consensus 452 ~e~~~~g~~~~rei~~~~lieral~~vi~~~~~~p~-tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs~ 530 (755)
++++ .+++++++++++++++|+|+++++. +.||+ +|+|+++||++|||+++||+||+++||+|+|+|++++|+++++
T Consensus 91 ~~~~-~g~~~~~e~~~s~li~r~l~~~i~~-~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsv 168 (250)
T 2je6_B 91 DERK-NPAPSRREIELSKVIREALESAVLV-ELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAV 168 (250)
T ss_dssp SSCC-CSSCCHHHHHHHHHHHHHHHTTBCG-GGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEE
T ss_pred CCcc-CCCCChhHHHHHHHHHHHHHhhcCH-hhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEE
Confidence 9886 7789999999999999999999997 67775 7999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEEEecCCccccccCCccEEEEe--ecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhcccc
Q psy3754 531 GLIKDGEKVVILSDILGDEDRCGDMDFKVAG--TVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKC 608 (755)
Q Consensus 531 gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~--t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~ 608 (755)
|++++ .+|+||+..||+.++++++|+. +.++|+++|+++ +++.+++.+|++.|++++.+|++.|++++..+
T Consensus 169 g~~~~----~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g---~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 241 (250)
T 2je6_B 169 GKADG----VIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNG---SMTPDEFRQAFDLAVKGINIIYNLEREALKSK 241 (250)
T ss_dssp EEETT----EEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEE---CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEECC----EEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99965 6889999999999999999996 556699999985 47999999999999999999999999999886
Q ss_pred cc
Q psy3754 609 KN 610 (755)
Q Consensus 609 r~ 610 (755)
..
T Consensus 242 ~~ 243 (250)
T 2je6_B 242 YV 243 (250)
T ss_dssp GC
T ss_pred Hh
Confidence 54
No 12
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=1e-42 Score=364.08 Aligned_cols=228 Identities=24% Similarity=0.302 Sum_probs=207.4
Q ss_pred cCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCccccc
Q psy3754 376 KGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIG 455 (755)
Q Consensus 376 ~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~e~~ 455 (755)
..+|.|||+++|+|||.+++|+++++||||+|++|+|+|+|+|+ +|.. .++++.++++|+++++|+++|||++++.
T Consensus 9 ~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~-~~~~---~p~~~~~~~~g~l~v~~~~~P~a~~~~~ 84 (255)
T 3dd6_A 9 HHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSAT-IEER---VPPFMRGEGKGWVTAEYAMIPRATEQRT 84 (255)
T ss_dssp --CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEE-EESC---CCGGGTTSSCCEEEEEEEECTTSSSSCC
T ss_pred cccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEE-ecCC---CCCCCCCCCceEEEEEEEECCCcccccc
Confidence 46899999999999999999999999999999999999999998 5543 2356667889999999999999999875
Q ss_pred C----CCCCChhHHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhC-----------CCC
Q psy3754 456 R----IGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDA-----------GVP 520 (755)
Q Consensus 456 ~----~g~~~~rei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~da-----------GvP 520 (755)
+ .|+|++++++++++++|+|+++++++..++|+|+|+++||++|||+++||+||+++||+|| |+|
T Consensus 85 ~Re~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iP 164 (255)
T 3dd6_A 85 IRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIP 164 (255)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCC
Confidence 3 2789999999999999999999998666689999999999999999999999999999999 999
Q ss_pred cccceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEEEEeeecccccCHHHHHHHHHHHHhhhHHHHH
Q psy3754 521 ISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599 (755)
Q Consensus 521 i~~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~ 599 (755)
|+++|+++++|++++. .+|+||+..||+.++++++|+++.+| |+++|++++.++++.++|.+|++.|++++..|++
T Consensus 165 l~~~v~avsvg~i~g~---~vllDpt~~Ee~~~~~~l~Va~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~ 241 (255)
T 3dd6_A 165 VKDYLAATSVGIVEEQ---GVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLID 241 (255)
T ss_dssp BSSCEEEEEEEEETTT---EEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceeEEEEEEECCE---EEEeCCCHHHHhhcCceEEEEEcCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999652 45599999999999999999999998 9999998877889999999999999999999999
Q ss_pred HHHhhcccccc
Q psy3754 600 KMKTEVPKCKN 610 (755)
Q Consensus 600 ~~~~~l~~~r~ 610 (755)
.|+++++....
T Consensus 242 ~~~~~l~~~~~ 252 (255)
T 3dd6_A 242 IQKEALGDIVS 252 (255)
T ss_dssp HHHHHHGGGGG
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 13
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=9.8e-43 Score=369.24 Aligned_cols=238 Identities=23% Similarity=0.287 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCccc
Q psy3754 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438 (755)
Q Consensus 359 ~~~~~~~~~~~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~ 438 (755)
.+++..+++++++ .+++|+|+|||.++|+||+++++|+++++||||+|++|+|+|+|+|++||... +...++++
T Consensus 8 ~~~s~~~~~~i~~-~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p-----~~~~~~~g 81 (277)
T 2po1_B 8 EIVAGIMRDHIIN-LLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEP-----FPDTPNMG 81 (277)
T ss_dssp ---CCHHHHHHHH-HHHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECC-----CTTCTTSC
T ss_pred cccCccHHHHHHH-HHhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCC-----CCCCCCce
Confidence 5677788888888 56999999999999999999999999999999999999999999999877543 23456789
Q ss_pred EEEEEeecCCCCcccccCCCCCChhHHHHHHHHHHhccc--cCCCCC------CCceEEEEEEEEEccCCChhhHHHHHH
Q psy3754 439 SFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP--VLPNNN------KFNYSIRLVSEITESNGSSSMASVCGG 510 (755)
Q Consensus 439 ~~~~~~~f~p~s~~e~~~~g~~~~rei~~~~lieral~~--vi~~~~------~~p~tI~V~v~VLe~dGs~~~Aav~a~ 510 (755)
+++++|+|+|||++.. +.|++++++++++++++|+|++ +++++. .++|+|+|+++||++|||+++|++||+
T Consensus 82 ~l~~~~~~~p~a~~~~-~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa 160 (277)
T 2po1_B 82 VMTTNVELVPLASPTF-EPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAA 160 (277)
T ss_dssp EEEEEEEECGGGCTTC-CSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHH
T ss_pred EEEEEEEeCCCccccc-cCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999764 4567999999999999999998 566543 367999999999999999999999999
Q ss_pred HHHHHhCC---------------------CCcccceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEE
Q psy3754 511 CLALLDAG---------------------VPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITA 568 (755)
Q Consensus 511 slAL~daG---------------------vPi~~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~a 568 (755)
++||+|+| +||+++|+++++|++++ .+|+||+..||+.++++++|+++.+| +++
T Consensus 161 ~~AL~da~~p~~~~~~~~~~~~~~~~~~~ipl~~~~~avs~g~~~~----~~l~Dp~~~Ee~~~~~~~~v~~~~~g~i~~ 236 (277)
T 2po1_B 161 IAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTFAKIGN----ILVVDPSLDEELVMDGKITITTDETGHISA 236 (277)
T ss_dssp HHHHHHCEEEEEEECTTTCCEEEEEEEEECCBCCCCEEEEEEEETT----EEEESCCHHHHHHCSEEEEEEECTTSCEEE
T ss_pred HHHHHhcCCCcEEEeCCCceeecccccccccccCceEEEEEEEECC----EEEeCCCHHHHhhCCCcEEEEEcCCCCEEE
Confidence 99999999 89999999999999975 68899999999999999999999888 999
Q ss_pred EEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhcccc
Q psy3754 569 LQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKC 608 (755)
Q Consensus 569 lq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~ 608 (755)
+|+.++ ++++.++|.+|+++|.+++.+|.+.+++++.+.
T Consensus 237 lq~~g~-~~~~~~~l~~~l~~A~~~~~~l~~~~~~~l~~~ 275 (277)
T 2po1_B 237 VQKSEG-GAFKLEEVMYAVETAFKKAEEIRKLILEAVEKA 275 (277)
T ss_dssp EEEESS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 998754 689999999999999999999999999998764
No 14
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=5.1e-43 Score=365.03 Aligned_cols=228 Identities=27% Similarity=0.328 Sum_probs=186.6
Q ss_pred CcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCcccccC-
Q psy3754 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGR- 456 (755)
Q Consensus 378 ~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~e~~~- 456 (755)
+|+|||.++|+|||++++|+++++||||+|++|+|+|+|+|+ ||.. .+++..+++.|++++||+++|||++++.+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-~~~~---~p~~~~~~~~g~l~~~~~~~p~a~~~~~~R 76 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNAS-VEDR---VPPFLRGGGKGWITAEYSMLPQATNQQTIQ 76 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEE-EESC---CCGGGTTSCCCEEEEEEEC-----------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEE-eccc---cCCccCCCCceEEEEEEEeCCCcCcccccc
Confidence 599999999999999999999999999999999999999998 5543 23345567899999999999999998743
Q ss_pred ---CCCCChhHHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhCC-----------CCcc
Q psy3754 457 ---IGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAG-----------VPIS 522 (755)
Q Consensus 457 ---~g~~~~rei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~daG-----------vPi~ 522 (755)
.|+++.++++++++++|+|+++++++.+++|+|+|+++||++|||+++||+||+++||+||| +||+
T Consensus 77 e~~~G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~ 156 (245)
T 1oys_A 77 ESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPIT 156 (245)
T ss_dssp --------CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBC
T ss_pred cccCCCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCC
Confidence 36789999999999999999999986667789999999999999999999999999999999 9999
Q ss_pred cceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHH
Q psy3754 523 EHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601 (755)
Q Consensus 523 ~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~ 601 (755)
++|+++++|++++. .+|+||+..||+.++++++|+++.+| ++++|++++.++++.++|.+|++.|++++.+|++.|
T Consensus 157 ~~v~avs~g~~~g~---~vl~Dp~~~Ee~~~~~~~~v~~~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~ 233 (245)
T 1oys_A 157 DFLAAISVGIDKEQ---GILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQ 233 (245)
T ss_dssp SCEEEEEEEEETTT---EEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECCE---EEEecCCHHHHhcCCCcEEEEEcCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999642 55699999999999999999999888 999999987788999999999999999999999999
Q ss_pred Hhhcccccccc
Q psy3754 602 KTEVPKCKNEL 612 (755)
Q Consensus 602 ~~~l~~~r~~~ 612 (755)
++++..+..++
T Consensus 234 ~~~l~~~~~~~ 244 (245)
T 1oys_A 234 KEVLGDSLPEL 244 (245)
T ss_dssp HHHC-------
T ss_pred HHHHhhhhhhc
Confidence 99999887655
No 15
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.5e-42 Score=362.09 Aligned_cols=236 Identities=21% Similarity=0.235 Sum_probs=208.7
Q ss_pred ccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCcccc
Q psy3754 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDI 454 (755)
Q Consensus 375 ~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~e~ 454 (755)
..|+|+|||.++|+||+.+++|+++++||||+|++|+|+|+|+|+ +|... +.+..+++.++++++|+++|||++++
T Consensus 3 ~~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~-~~~~~---p~~~~~~~~g~l~v~~~~~p~a~~~~ 78 (262)
T 3b4t_A 3 HVSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTAS-VTEGV---PRWRKATGLGWLTAEYAMLPSATHSR 78 (262)
T ss_dssp --CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEE-EEESC---C----CCSCCEEEEEEEECGGGSSSC
T ss_pred CCCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEE-ecCcC---CCccCCCCceEEEEEEEeCCCccccc
Confidence 358999999999999999999999999999999999999999998 55432 22333467899999999999999887
Q ss_pred cCC----CCCChhHHHHHHHHHHhccccCCCCCCCc-eEEEEEEEEEccCCChhhHHHHHHHHHHHhC------------
Q psy3754 455 GRI----GVPKRREIGHGRLAKRALLPVLPNNNKFN-YSIRLVSEITESNGSSSMASVCGGCLALLDA------------ 517 (755)
Q Consensus 455 ~~~----g~~~~rei~~~~lieral~~vi~~~~~~p-~tI~V~v~VLe~dGs~~~Aav~a~slAL~da------------ 517 (755)
.+. |++++++++++++++|+|++++++ +.|| |+|+|+++||++||++.+||+||+++||+|+
T Consensus 79 ~~Re~~~G~~~~~~~~isrli~r~lr~~i~~-~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ 157 (262)
T 3b4t_A 79 SDRESVRGRLSGRTQEISRLIGRSLRACIDL-AALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSD 157 (262)
T ss_dssp CCCHHHHTSCCHHHHHHHHHHHHHHHTTBCH-HHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHhcCH-hHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCcccc
Confidence 542 689999999999999999999997 5566 8999999999999999999999999999999
Q ss_pred CCCcccceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEEEEeeecccccCHHHHHHHHHHHHhhhHH
Q psy3754 518 GVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSY 596 (755)
Q Consensus 518 GvPi~~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~alq~~~k~~~is~~~l~~al~~A~~~~~~ 596 (755)
|+||+++|+++++|++++ .+|+||+..||+.++++++|+++.+| |+++|++++..+++.++|.+|++.|++++.+
T Consensus 158 ~ip~~~~v~avsvg~~~g----~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~ 233 (262)
T 3b4t_A 158 PRPLSCAIAAVSVGVVDG----RIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDT 233 (262)
T ss_dssp SCCBCSCEEEEEEEEETT----EEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHH
T ss_pred CCcccCceeEEEEEEECC----EEEECCCHHHHhccCceEEEEEcCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999964 58899999999999999999999876 9999998766789999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCce
Q psy3754 597 ILEKMKTEVPKCKNELSKFAPRL 619 (755)
Q Consensus 597 I~~~~~~~l~~~r~~~~~~~P~~ 619 (755)
|.+.|++++..+..+..+++|..
T Consensus 234 i~~~~~~~l~~~~~~~~~~~~~~ 256 (262)
T 3b4t_A 234 LFAAQRDALALPYPGVLPQGPPP 256 (262)
T ss_dssp HHHHHHHHHTSCCSSCCC-----
T ss_pred HHHHHHHHHhcchhccCccCCCC
Confidence 99999999999998889998854
No 16
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-42 Score=362.97 Aligned_cols=227 Identities=20% Similarity=0.258 Sum_probs=192.7
Q ss_pred HHHccCCcCCCCCCCCccceEEEeCCCCCC-CceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCC
Q psy3754 372 QILDKGLRIDNRGVNDIRPISIRTGILPRT-HGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFA 450 (755)
Q Consensus 372 ~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a-~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s 450 (755)
.++++|+|+|||.++|+||+.+++|+++++ ||||+|++|+|+|+|+|+ ||.+..+ ++...++.+.++++|+++|||
T Consensus 6 ~~~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~-~~~~~~~--~~~~~~~~g~l~v~~~~~p~a 82 (246)
T 2wp8_B 6 IYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVK-GPKEPRL--KSQMDTSKALLNVSVNINKFS 82 (246)
T ss_dssp SSCTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEE-EEEC--------CCSSSEEEEEEEEEC---
T ss_pred hhcccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEE-ecCCccc--ccccCCCcEEEEEEEEeCCcc
Confidence 467899999999999999999999999999 999999999999999998 8865432 233456789999999999999
Q ss_pred cccccCC-CCCChhHHHHHHHHHHhccccCCCCCCCc-eEEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEE
Q psy3754 451 TGDIGRI-GVPKRREIGHGRLAKRALLPVLPNNNKFN-YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGI 528 (755)
Q Consensus 451 ~~e~~~~-g~~~~rei~~~~lieral~~vi~~~~~~p-~tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~v 528 (755)
++++.+. +++++++++++++++|+|++++++ +.|| |+|+|+++||++|||+++||+||+++||+|+|+||+++|+++
T Consensus 83 ~~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~-~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~av 161 (246)
T 2wp8_B 83 KFERSKSSHKNERRVLEIQTSLVRMFEKNVML-NIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGI 161 (246)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHBCT-TTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEEE
T ss_pred cccccccCCCCChhHHHHHHHHHHHHHHhhhH-HHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeEE
Confidence 9988765 667899999999999999999998 6786 569999999999999999999999999999999999999999
Q ss_pred EEEEEecCceEEEEecCCccccccCCccEEEEe--ecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhcc
Q psy3754 529 AMGLIKDGEKVVILSDILGDEDRCGDMDFKVAG--TVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606 (755)
Q Consensus 529 s~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~--t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~ 606 (755)
++|++++ .+|+||+..|| .++++++|+. +.++|+++|+++ .++.++|.+|++.|++++.+|++.|++++.
T Consensus 162 s~g~~~~----~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g---~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 233 (246)
T 2wp8_B 162 SVGLYDT----TPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLVED---KIPLDRLENVLAIGIAGAHRVRDLMDEELR 233 (246)
T ss_dssp EEEEETT----EEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEECS---CEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC----EEEECCCchhh-ccCceEEEEEeCCCCCEEEEEecC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999965 68999999999 9999999965 456699999954 579999999999999999999999999998
Q ss_pred cccc
Q psy3754 607 KCKN 610 (755)
Q Consensus 607 ~~r~ 610 (755)
++.+
T Consensus 234 ~~~~ 237 (246)
T 2wp8_B 234 KHAQ 237 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 17
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.5e-42 Score=362.51 Aligned_cols=234 Identities=21% Similarity=0.267 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEE
Q psy3754 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSF 440 (755)
Q Consensus 361 ~~~~~~~~~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~ 440 (755)
.+..++..+++ ++++|+|+|||+++|+||+.+++|+++++||||+|++|+|+|+|+|++||.+. ...+++.+.+
T Consensus 8 ~s~~~~~~~~~-~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p-----~~~~~~~g~l 81 (271)
T 2wnr_A 8 IPEITRKSITD-LINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP-----FPDTPEMGVI 81 (271)
T ss_dssp -CCHHHHHHHH-HHHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECC-----CTTCTTCCEE
T ss_pred ccccHHHHHHH-HHhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecC-----CCCCCCceEE
Confidence 34455666666 89999999999999999999999999999999999999999999999877543 2345678999
Q ss_pred EEEeecCCCCcccccCCCCCChhHHHHHHHHHHhccc--cCCCCCC------CceEEEEEEEEEccCCChhhHHHHHHHH
Q psy3754 441 MLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP--VLPNNNK------FNYSIRLVSEITESNGSSSMASVCGGCL 512 (755)
Q Consensus 441 ~~~~~f~p~s~~e~~~~g~~~~rei~~~~lieral~~--vi~~~~~------~p~tI~V~v~VLe~dGs~~~Aav~a~sl 512 (755)
+++|+++|||+++. +.|++++++++++++++|+|++ +++++.+ ++|+|+|+++||++|||+.+||+||+++
T Consensus 82 ~v~~~~~p~a~~~~-~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~ 160 (271)
T 2wnr_A 82 LTNSELLPMASPTF-EPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVA 160 (271)
T ss_dssp EEEEEECGGGCTTC-CCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHH
T ss_pred EEEEEeCCcccccc-cCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999874 5778999999999999999998 7886433 4899999999999999999999999999
Q ss_pred HHHhCC--------------------CCcccceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEEEEe
Q psy3754 513 ALLDAG--------------------VPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQM 571 (755)
Q Consensus 513 AL~daG--------------------vPi~~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~alq~ 571 (755)
||+|+| +||+++|+++++|++++ .+|+||+..||..++++++|+++.+| ++++|+
T Consensus 161 AL~~a~~p~~~~~~~~~~~~~~~~~~ip~~~~~~avt~g~~~~----~~l~Dpt~~Ee~~~~~~l~va~~~~~~i~~i~~ 236 (271)
T 2wnr_A 161 ALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTFAKIGN----EIVLDPSLEEEDILTARISIGVTEEGSICAMQK 236 (271)
T ss_dssp HHHHCEEEEEEEETTEEEEEEEEEEECCBCCCEEEEEEEEETT----EEEESCCHHHHTTCSEEEEEEEETTSCEEEEEE
T ss_pred HHHhcCCCeEEecCCceeeccCcccccCccCCeEEEEEEEECC----EEEeCCCHHHHhcCCCcEEEEEeCCCCEEEEEC
Confidence 999999 99999999999999975 68899999999999999999999866 999999
Q ss_pred eecccccCHHHHHHHHHHHHhhhHHHHHHHHhhcc
Q psy3754 572 DIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606 (755)
Q Consensus 572 ~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~ 606 (755)
.++ ++++.++|.+|++.|++++.+|.+.|+++++
T Consensus 237 ~g~-~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 237 GGE-GPLTRDDVLKAVSIAVEKVPQLIEYLDKSMT 270 (271)
T ss_dssp ESS-SCBCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 875 6899999999999999999999999999874
No 18
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=1e-41 Score=357.91 Aligned_cols=233 Identities=19% Similarity=0.264 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCccc
Q psy3754 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438 (755)
Q Consensus 359 ~~~~~~~~~~~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~ 438 (755)
.+++..+++++++ .+++|+|+|||.++|+||+.+++|+++++||||++++|+|+|+|+|+.++... +...++.+
T Consensus 4 ~~ls~~e~~~i~~-~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p-----~~~~~~~g 77 (259)
T 3m7n_G 4 DILVDIKRDYVLS-KLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP-----YPDTPDRG 77 (259)
T ss_dssp CHHHHHHHHHHHH-HHHTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECC-----CSSCTTSC
T ss_pred cccCHHHHHHHHH-HHhcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccCC-----CCCCCCce
Confidence 4678899999988 55689999999999999999999999999999999999999999999755321 33456789
Q ss_pred EEEEEeecCCCCcccccCCCCCChhHHHHHHHHHHhccc--cCCCCCC------CceEEEEEEEEEccCCChhhHHHHHH
Q psy3754 439 SFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP--VLPNNNK------FNYSIRLVSEITESNGSSSMASVCGG 510 (755)
Q Consensus 439 ~~~~~~~f~p~s~~e~~~~g~~~~rei~~~~lieral~~--vi~~~~~------~p~tI~V~v~VLe~dGs~~~Aav~a~ 510 (755)
+++++|+++|||++++ +.|+|++++++++++++|+|++ +++++.+ |+|+|+|+++||++|||+.+||+||+
T Consensus 78 ~l~v~~~~~p~a~~~~-~~g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa 156 (259)
T 3m7n_G 78 VIIVNAELVPLASPTF-EPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAA 156 (259)
T ss_dssp EEEEEEECCTTSCTTC-CSSSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHH
T ss_pred EEEEEEEeCCcccccc-cCCCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHH
Confidence 9999999999999986 4578999999999999999998 7876443 45999999999999999999999999
Q ss_pred HHHHHhCCC-------------CcccceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEEEEeeeccc
Q psy3754 511 CLALLDAGV-------------PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIF 576 (755)
Q Consensus 511 slAL~daGv-------------Pi~~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~alq~~~k~~ 576 (755)
++||+|+|+ |++++|+++++|++++ .+|+||+..||+.++++++|+++.+| ++++|+.++ +
T Consensus 157 ~~AL~~a~iP~~~~~~~~~~~lp~~~~~~avtvg~~~~----~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~-~ 231 (259)
T 3m7n_G 157 IAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGN----KYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGG-Y 231 (259)
T ss_dssp HHHHHTCEECTGGGTSSSCEECCBCCCCEEEEEEEETT----EEEESCCTTGGGGCSCEEEEEECTTSCEEEEEEESS-C
T ss_pred HHHHHhCCCCeEEecCCceecccccCceeEEEEEEECC----EEEECCCHHHHhhCCCcEEEEEeCCCcEEEEECCCC-C
Confidence 999999999 7999999999999965 68899999999999999999999885 999999875 7
Q ss_pred ccCHHHHHHHHHHHHhhhHHHHHHHHh
Q psy3754 577 GITYDIIQIALYKAKKGLSYILEKMKT 603 (755)
Q Consensus 577 ~is~~~l~~al~~A~~~~~~I~~~~~~ 603 (755)
+++.++|.+|++.|++++.+|.+.|++
T Consensus 232 ~~~~~~l~~~l~~a~~~~~~l~~~~~~ 258 (259)
T 3m7n_G 232 LLDEKLFDELLDVSINCARKLREKFKE 258 (259)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999998764
No 19
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=2.4e-41 Score=354.26 Aligned_cols=222 Identities=26% Similarity=0.343 Sum_probs=205.2
Q ss_pred CcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCcccccC-
Q psy3754 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGR- 456 (755)
Q Consensus 378 ~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~e~~~- 456 (755)
+|+|||.++|+|||.+++|+++++||||+|++|+|+|+|+|+ ||... +++..++++|+++++|+++||++.++++
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~-~~~~~---p~~~~~~~~g~l~~~~~~~P~a~~~r~~R 76 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTAS-VIENV---PNWLKGKGQGWITAEYSMLPRATQQRTIR 76 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEE-EESCC---CGGGTTSSCCEEEEEEEECSCCTTSCCCC
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEE-cCCcC---CCCCCCCCceEEEEEEEcCCCcccccccc
Confidence 599999999999999999999999999999999999999998 55433 3455667899999999999999988743
Q ss_pred ---CCCCChhHHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhCC-----------CCcc
Q psy3754 457 ---IGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAG-----------VPIS 522 (755)
Q Consensus 457 ---~g~~~~rei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~daG-----------vPi~ 522 (755)
.|+++.++++++++++|+|+++++++.+++|+|+|+++||++|||+++||+||+++||+||| +||+
T Consensus 77 e~~~G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~ 156 (255)
T 1udn_A 77 ESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIK 156 (255)
T ss_dssp SSTTCSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCcc
Confidence 36789999999999999999999997778899999999999999999999999999999999 9999
Q ss_pred cceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHH
Q psy3754 523 EHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601 (755)
Q Consensus 523 ~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~ 601 (755)
++|+++++|++++ .+|+||+..||+.++++++|+++.+| ++.+|++++.++++.++|.+|++.|++++.+|++.|
T Consensus 157 ~~v~avsvg~~~g----~~llDpt~~Ee~~~~~~l~va~~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~ 232 (255)
T 1udn_A 157 DFVAAVSVGIVND----RILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQ 232 (255)
T ss_dssp CCEEEEEEEEETT----EEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECC----EEEECCCHHHHhhCCCCEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999964 58899999999999999999999888 999999887788999999999999999999999999
Q ss_pred Hhhccc
Q psy3754 602 KTEVPK 607 (755)
Q Consensus 602 ~~~l~~ 607 (755)
++++.+
T Consensus 233 ~~~l~~ 238 (255)
T 1udn_A 233 KKLYVI 238 (255)
T ss_dssp HTTEEE
T ss_pred HHHHHh
Confidence 999986
No 20
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.9e-41 Score=359.67 Aligned_cols=241 Identities=15% Similarity=0.199 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcc
Q psy3754 358 NCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFT 437 (755)
Q Consensus 358 ~~~~~~~~~~~~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~ 437 (755)
.++|.++.++.++...+++|+|+|||.++|+||+.+++|+++++||||+|++|+|+|+|+|+ |+... + ....++.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-~~~~~-p---~~~~~~~ 78 (278)
T 2nn6_C 4 AAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVK-AEFAA-P---STDAPDK 78 (278)
T ss_dssp -----CCSTHHHHHHHHHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEE-EEECC-C---CSSSTTC
T ss_pred hhhhhhhCHHHHHHHHHhcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEE-EEeec-C---CCCCCCc
Confidence 45788999999999999999999999999999999999999999999999999999999998 44321 2 2223578
Q ss_pred cEEEEEeecCCCCcccccCCCCCChhHHHHHHHHHHhcc--ccCCCC------CCCceEEEEEEEEEccCCChhhHHHHH
Q psy3754 438 DSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALL--PVLPNN------NKFNYSIRLVSEITESNGSSSMASVCG 509 (755)
Q Consensus 438 ~~~~~~~~f~p~s~~e~~~~g~~~~rei~~~~lieral~--~vi~~~------~~~p~tI~V~v~VLe~dGs~~~Aav~a 509 (755)
+.++++|+++|||++++ +.|++++++++++++++|+|+ ++++++ ..|+|+|+|+++||++|||+.+||+||
T Consensus 79 g~l~v~~~~~p~a~~~~-~~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~a 157 (278)
T 2nn6_C 79 GYVVPNVDLPPLCSSRF-RSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFA 157 (278)
T ss_dssp CCCEEEEECCSSSCTTS-CSSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHH
T ss_pred cEEEEEEEeCCccCccc-cCCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHH
Confidence 99999999999999986 457899999999999999999 477654 358999999999999999999999999
Q ss_pred HHHHHHhCCC----------------------CcccceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-E
Q psy3754 510 GCLALLDAGV----------------------PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-I 566 (755)
Q Consensus 510 ~slAL~daGv----------------------Pi~~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i 566 (755)
+++||+|+|+ ||+++|+++++|+++++ .+|+||+..||..++++++|+++.+| +
T Consensus 158 a~~AL~~a~iP~v~~~~~~~~~~~~~~~~~~lp~~~~~~avs~g~~~~~---~~l~Dpt~~Ee~~~~~~l~va~~~~g~i 234 (278)
T 2nn6_C 158 LLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVFDDT---LLIVDPTGEEEHLATGTLTIVMDEEGKL 234 (278)
T ss_dssp HHHHHHTCCCCCCCBCSSSBCCCTTSCCCSCSCCSCCCEEEEEEECTTT---CCEESCCTTTTTSCSEEEEEEECTTCCE
T ss_pred HHHHHHhCCCCeEEEeCCCcceecCcccccccccCCceEEEEEEEECCc---eEEECCCHHHHhhcCceEEEEEcCCCcE
Confidence 9999999996 79999999999999753 47899999999999999999999886 9
Q ss_pred EEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhcccc
Q psy3754 567 TALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKC 608 (755)
Q Consensus 567 ~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~ 608 (755)
+++|+.+ ..+++.++|.+|++.|++++..|.+.|++++++.
T Consensus 235 ~~v~~~g-~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~ 275 (278)
T 2nn6_C 235 CCLHKPG-GSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSM 275 (278)
T ss_dssp EEEEESC-CSCCCHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred EEEEccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999987 4579999999999999999999999999998864
No 21
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.3e-42 Score=364.23 Aligned_cols=226 Identities=19% Similarity=0.249 Sum_probs=194.2
Q ss_pred ccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCcccccccc---------ccCCcccEEEEEee
Q psy3754 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDA---------LMGEFTDSFMLHYN 445 (755)
Q Consensus 375 ~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~---------~~~~~~~~~~~~~~ 445 (755)
++++|+|||.++|+|+|++++|+++++||||+|++|+|+|+|+|+ ||.+..+..+. ...++.+++++||+
T Consensus 23 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~~ 101 (272)
T 2nn6_F 23 DEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS-GPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFR 101 (272)
T ss_dssp ------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEE-EEECC-------------------CBCEEEEEEE
T ss_pred ccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEE-CCCcccccccccccccccccccCCCceEEEEEEE
Confidence 788999999999999999999999999999999999999999997 88765443220 00345799999999
Q ss_pred cCCCCcccccCCCCCChhHHHHHHHHHHhccccCCCCCCCc-eEEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccc
Q psy3754 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN-YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEH 524 (755)
Q Consensus 446 f~p~s~~e~~~~g~~~~rei~~~~lieral~~vi~~~~~~p-~tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~ 524 (755)
|+|||+++++ .+++++++++++++++|+|++++++ ++|| |+|+|+++||++|||+++||+||+++||+|+|||++++
T Consensus 102 ~~p~a~~~~~-~~~~~~~e~~~s~li~r~l~~~i~~-~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~~~~ 179 (272)
T 2nn6_F 102 RAPFAGRRRR-APPGGCEERELALALQEALEPAVRL-GRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDL 179 (272)
T ss_dssp ECTTSSSSCC-CSCCHHHHHHHHHHHHHHHTTTBCS-TTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBSSC
T ss_pred ecCCCcCCcc-CCCCCHHHHHHHHHHHHHHHHhccH-HHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCcccCc
Confidence 9999999865 4789999999999999999999997 7899 68999999999999999999999999999999999999
Q ss_pred eEEEEEEEE--ecCceEEEEecCCccccccCCccEEEE--eecCcEEEEEeeecccccCH-HHHHHHHHHHHhhhHHHHH
Q psy3754 525 VAGIAMGLI--KDGEKVVILSDILGDEDRCGDMDFKVA--GTVNGITALQMDIKIFGITY-DIIQIALYKAKKGLSYILE 599 (755)
Q Consensus 525 va~vs~gli--~~~~~~~vL~Dp~~~Ee~~gd~~~~Va--~t~~gi~alq~~~k~~~is~-~~l~~al~~A~~~~~~I~~ 599 (755)
|+++++|++ .++ .+|+||+..||+.++++++|+ ++.++|+++|+++ +++. ++|.+|++.|++++.+|++
T Consensus 180 v~avsvg~~~~~~~---~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g---~~~~~~~l~~~l~~A~~~~~~i~~ 253 (272)
T 2nn6_F 180 VVGCGLSLAPGPAP---TWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSG---EGGLTESWAEAVRLGLEGCQRLYP 253 (272)
T ss_dssp CEEEECCCCSCSSC---CCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEEC---CSSCTTTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeeccCC---eEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEec---CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999994 222 588999999999999999998 4566799999985 4788 9999999999999999999
Q ss_pred HHHhhccccc
Q psy3754 600 KMKTEVPKCK 609 (755)
Q Consensus 600 ~~~~~l~~~r 609 (755)
.|++++.++.
T Consensus 254 ~~~~~l~~~~ 263 (272)
T 2nn6_F 254 VLQQSLVRAA 263 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 22
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=1.3e-40 Score=345.72 Aligned_cols=221 Identities=24% Similarity=0.311 Sum_probs=201.0
Q ss_pred CcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCcccccCC
Q psy3754 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRI 457 (755)
Q Consensus 378 ~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~e~~~~ 457 (755)
.|+|||.++|+||+.+++|+++++||||+|++|+|+|+|+|+ +|... +++..++++|+++++|+++|+++.++.++
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~-~~~~~---p~~~~~~~~g~l~v~~~~~p~~~~~r~~R 77 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVS-AESGV---PRFLKGQGQGWLTAEYGMLPRSTGERNQR 77 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEE-EEESC---SSCCC---CCEEEEEEEECTTSSSSCCCC
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEE-ccCcc---CCccCCCCcEEEEEEEEeCCCcccccccc
Confidence 499999999999999999999999999999999999999998 55432 34455578999999999999999877332
Q ss_pred ----CCCChhHHHHHHHHHHhccccCCCCCCCceEEEEEEEEEccCCChhhHHHHHHHHHHHhCC-----------CCcc
Q psy3754 458 ----GVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAG-----------VPIS 522 (755)
Q Consensus 458 ----g~~~~rei~~~~lieral~~vi~~~~~~p~tI~V~v~VLe~dGs~~~Aav~a~slAL~daG-----------vPi~ 522 (755)
|+++.++++++++++|+|+++++++.+++|+|+|+++||++|||+.+||+||+++||+||| +||+
T Consensus 78 e~~~G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~ 157 (239)
T 1r6l_A 78 EASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLK 157 (239)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBC
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCcc
Confidence 6799999999999999999999997777789999999999999999999999999999999 9999
Q ss_pred cceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHH
Q psy3754 523 EHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601 (755)
Q Consensus 523 ~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~ 601 (755)
++|+++++|++++ .+|+||+..||..++++++|+++.+| ++.+|++++.++++.++|.+|++.|++++.+|++.|
T Consensus 158 ~~~~avs~g~~~~----~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~ 233 (239)
T 1r6l_A 158 QMVAAVSVGIYQG----VPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQ 233 (239)
T ss_dssp CCEEEEEEEEETT----EEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECC----EEEECCCHHHHhcCCceEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999964 58899999999999999999999888 999999887788999999999999999999999999
Q ss_pred Hhhcc
Q psy3754 602 KTEVP 606 (755)
Q Consensus 602 ~~~l~ 606 (755)
+++++
T Consensus 234 ~~~l~ 238 (239)
T 1r6l_A 234 RAALA 238 (239)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
No 23
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=5.6e-41 Score=355.87 Aligned_cols=232 Identities=21% Similarity=0.262 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEE
Q psy3754 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFML 442 (755)
Q Consensus 363 ~~~~~~~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~ 442 (755)
..++..+++ .+++|+|+|||.++|+||+.+++|+++++||||+|++|+|+|+|+|++||... +..+++.+.+++
T Consensus 15 ~~~~~~i~~-~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p-----~~~~~~~g~l~v 88 (277)
T 2je6_A 15 IIKKESIVS-LFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-----YEDTPNQGNLIV 88 (277)
T ss_dssp HHHHHHHTT-TGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECC-----CTTCTTCCEEEE
T ss_pred ccHHHHHHH-HHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCC-----CCCCCCccEEEE
Confidence 445555555 79999999999999999999999999999999999999999999999876432 234567899999
Q ss_pred EeecCCCCcccccCCCCCChhHHHHHHHHHHhccc--cCCCCCC------CceEEEEEEEEEccCCChhhHHHHHHHHHH
Q psy3754 443 HYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP--VLPNNNK------FNYSIRLVSEITESNGSSSMASVCGGCLAL 514 (755)
Q Consensus 443 ~~~f~p~s~~e~~~~g~~~~rei~~~~lieral~~--vi~~~~~------~p~tI~V~v~VLe~dGs~~~Aav~a~slAL 514 (755)
+|+++|||++++ +.|+|++++++++++++|+|++ +++++.+ ++|+|+|+++||++|||..+||+||+++||
T Consensus 89 ~~~~~p~a~~~~-~~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL 167 (277)
T 2je6_A 89 NVELLPLAYETF-EPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAAL 167 (277)
T ss_dssp EEEECTTSCTTC-CCSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred EEEeCCccCccc-ccCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999875 3678999999999999999999 5776443 589999999999999999999999999999
Q ss_pred HhCC---------------------CCcccceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEEEEee
Q psy3754 515 LDAG---------------------VPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMD 572 (755)
Q Consensus 515 ~daG---------------------vPi~~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~alq~~ 572 (755)
+|+| +||+++|+++++|++++ .+|+||+..||..++++++|+++.+| ++++|++
T Consensus 168 ~~a~~p~v~~~~~~~~~~~~~~~~~ip~~~~~~avsvg~~~~----~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~~ 243 (277)
T 2je6_A 168 YNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDK----YLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKS 243 (277)
T ss_dssp HTCEEEEEECC---CEEEEEEEEEECCCSCCCEEEEEEEETT----EEEESCCHHHHHHCSEEEEEEECTTCCEEEEEEE
T ss_pred HhcCCCeEEecCCcceEeccCccccccccCCeEEEEEEEECC----EEecCCCHHHHhcCCCcEEEEEeCCCCEEEEECC
Confidence 9999 99999999999999965 68899999999999999999999876 9999998
Q ss_pred ecccccCHHHHHHHHHHHHhhhHHHHHHHHhhcc
Q psy3754 573 IKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606 (755)
Q Consensus 573 ~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~ 606 (755)
++ ++++.++|.+|++.|++++.+|++.|+++++
T Consensus 244 g~-~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 244 GK-GSMSLQDIDQAENTARSTAVKLLEELKKHLG 276 (277)
T ss_dssp SS-SCEEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 75 6899999999999999999999999998864
No 24
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-40 Score=353.25 Aligned_cols=239 Identities=16% Similarity=0.172 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEE
Q psy3754 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSF 440 (755)
Q Consensus 361 ~~~~~~~~~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~ 440 (755)
++..++.++++ .+++|+|+|||.++|+|||+|++| ++||||+|++|+|+|+|+|+ ||... + ....++.+.+
T Consensus 7 ~s~~e~~~i~~-~l~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~-~~~~~-p---~~~~~~~g~~ 77 (305)
T 2wp8_A 7 ISASESKFILE-ALRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRIS-CQIAQ-P---YEDRPFEGLF 77 (305)
T ss_dssp CCHHHHHHHHH-HHTTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEE-EEEC--C---CSSCTTCCEE
T ss_pred cCcCHHHHHHH-HHhhCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEe-ccccC-C---cccCCCCcEE
Confidence 34566677776 589999999999999999999999 89999999999999999998 44321 1 2224568999
Q ss_pred EEEeecCCCCcccccCCCCCC-hhHHHHHHHHHHhcc--ccCCCC------CCCceEEEEEEEEEccCCChhhHHHHHHH
Q psy3754 441 MLHYNMPPFATGDIGRIGVPK-RREIGHGRLAKRALL--PVLPNN------NKFNYSIRLVSEITESNGSSSMASVCGGC 511 (755)
Q Consensus 441 ~~~~~f~p~s~~e~~~~g~~~-~rei~~~~lieral~--~vi~~~------~~~p~tI~V~v~VLe~dGs~~~Aav~a~s 511 (755)
.++|+|+|+++++.+ .|+++ +++++++++++|+|+ ++|+++ ..|+|+|+|+++||++|||+++||+||++
T Consensus 78 ~~~ve~~~~~~~~~~-~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~ 156 (305)
T 2wp8_A 78 VISTEISPMAGSQFE-NGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVM 156 (305)
T ss_dssp EEEECCC-----------------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHH
T ss_pred EEEEEECCCCCcccc-CCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999998763 46778 999999999999999 566653 34779999999999999999999999999
Q ss_pred HHHHhCCCC-----------------------cccceEEEEEEEEe--------cCc--eEEEEecCCccccccCCccEE
Q psy3754 512 LALLDAGVP-----------------------ISEHVAGIAMGLIK--------DGE--KVVILSDILGDEDRCGDMDFK 558 (755)
Q Consensus 512 lAL~daGvP-----------------------i~~~va~vs~gli~--------~~~--~~~vL~Dp~~~Ee~~gd~~~~ 558 (755)
+||+|+|+| |++.|+++++|+++ +++ +..+|+||+..||+.++++|+
T Consensus 157 ~AL~~a~iP~~~~~~~~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~ 236 (305)
T 2wp8_A 157 AGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLT 236 (305)
T ss_dssp HHHHHCEECCCBCTTSSCCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEE
T ss_pred HHHHHhCCCeEEecCCceEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEE
Confidence 999999999 67889999999996 220 036889999999999999999
Q ss_pred EEeecCc-EEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhcccccc
Q psy3754 559 VAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKN 610 (755)
Q Consensus 559 Va~t~~g-i~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~r~ 610 (755)
|+++.+| ++++|+.+ ..+++.++|.+|+++|++++.+|++.|++++..+..
T Consensus 237 Va~~~~g~i~~l~~~g-~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 288 (305)
T 2wp8_A 237 VTLNKNREVVQVSKAG-GLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSE 288 (305)
T ss_dssp EEECTTSEEEEEEEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCcEEEEEecC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999987 567999999999999999999999999999987654
No 25
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.8e-40 Score=353.08 Aligned_cols=239 Identities=17% Similarity=0.120 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCccc
Q psy3754 359 CILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438 (755)
Q Consensus 359 ~~~~~~~~~~~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~ 438 (755)
.+++..++.++++ .+++|+|+|||+++|+|||.+++|++++++|||+|++|+|+|+|+|+ |+... ++...++.+
T Consensus 18 ~~~s~~e~~~i~~-~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~-~e~~~----p~~~~~~~g 91 (305)
T 2nn6_E 18 VTLSEAEKVYIVH-GVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK-AEMGT----PKLEKPNEG 91 (305)
T ss_dssp -CCCHHHHHHHHH-HHHTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECC-CCCSC----CCSSSCSSC
T ss_pred cccChhHHHHHHH-HHhcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEE-EEeeC----CCcCCCCce
Confidence 4567788888888 46899999999999999999999999999999999999999999998 54321 234456789
Q ss_pred EEEEEeecCCCCcccccCCCCCChhHHHHHHHHHHhccc--cCCCC------CCCceEEEEEEEEEccCCChhhHHHHHH
Q psy3754 439 SFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP--VLPNN------NKFNYSIRLVSEITESNGSSSMASVCGG 510 (755)
Q Consensus 439 ~~~~~~~f~p~s~~e~~~~g~~~~rei~~~~lieral~~--vi~~~------~~~p~tI~V~v~VLe~dGs~~~Aav~a~ 510 (755)
+|.++|+|+|+|++++ +.+++++++++++++++|+|++ +++++ ..|+|+|+|+++||++|||+.+||+||+
T Consensus 92 ~l~~~v~~~p~a~~~~-~~r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa 170 (305)
T 2nn6_E 92 YLEFFVDCSASATPEF-EGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAV 170 (305)
T ss_dssp CEEEECCCCTTTCSSC-CTTSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHH
T ss_pred EEEEEEEeCCCcCccc-cCCCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999876 3455668999999999999998 44443 4678999999999999999999999999
Q ss_pred HHHHHhCCCCccc---------------------------ceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeec
Q psy3754 511 CLALLDAGVPISE---------------------------HVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTV 563 (755)
Q Consensus 511 slAL~daGvPi~~---------------------------~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~ 563 (755)
++||+|+|+|+.. +|+++++|++++ .+|+||+..||..++++++|+++.
T Consensus 171 ~~AL~~a~iP~~~~~~~~~~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~----~~l~Dpt~~Ee~~~~~~l~Va~~~ 246 (305)
T 2nn6_E 171 KAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGY----RHVVDATLQEEACSLASLLVSVTS 246 (305)
T ss_dssp HHTTTTCCCCEEEEECC------EEEEESSCCCSCCCCTTCCCCEEEEESSS----SEESSCCHHHHTSCSEEEEECCCS
T ss_pred HHHHHhcCCCeEEEecCCCCceeeeccCcccccccccccCceEEEEEEEECC----EEEECCCHHHHhhcCCcEEEEEcC
Confidence 9999999999653 477999999965 588999999999999999999998
Q ss_pred Cc-EEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhccccc
Q psy3754 564 NG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609 (755)
Q Consensus 564 ~g-i~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~r 609 (755)
+| |+++|+.+ ..+++.++|.+|++.|++++..|++.|+++++.+.
T Consensus 247 ~g~i~~i~~~g-~~~l~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 292 (305)
T 2nn6_E 247 KGVVTCMRKVG-KGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEE 292 (305)
T ss_dssp SSCCCEEEEEE-SSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 99999987 56899999999999999999999999999998754
No 26
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=1.2e-39 Score=340.85 Aligned_cols=207 Identities=20% Similarity=0.241 Sum_probs=184.6
Q ss_pred CCeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCC---CCCCcceeeEEeEeeccccCCCCCCccc---cc---C
Q psy3754 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPT---STYNFFPLTVDYIEKAYAAGRIPGSFFK---RE---G 145 (755)
Q Consensus 75 ~~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~---~~~~f~pl~v~y~e~~~a~g~ip~~~~k---Re---g 145 (755)
..|++.+|+|.+ ++|+|||++++|+|+|||+|+++.+.+ ++.+-.+|+++|.-. |+++.+ || |
T Consensus 20 e~R~i~i~~g~~-~~A~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~-------P~a~~~~~~Re~~~g 91 (255)
T 3dd6_A 20 ELRHIHIHTNYL-KHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMI-------PRATEQRTIRESSKG 91 (255)
T ss_dssp CCCCEEEEESCS-SSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEEC-------TTSSSSCCCCCCC-C
T ss_pred CCCCEEEEECCC-CCCCeEEEEEECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEEC-------CCcccccccccccCC
Confidence 479999999987 999999999999999999999986422 122333499999743 444444 66 8
Q ss_pred CCCchhhHHHHHhcCcccccccCCC--cCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcC-----------CCCCCCCe
Q psy3754 146 KPSERETIISRLIDRPIRPLFPEGY--LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSIS-----------ELPFLGPL 212 (755)
Q Consensus 146 ~p~~~e~l~sRlIdr~lrpl~p~~~--~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s-----------~IP~~~~v 212 (755)
+|++++++++|+|+|+|||+||.++ .|.++|+|+||++||+.. .||+|||++||+++ +|||++++
T Consensus 92 ~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~--~aai~aa~~AL~~a~~p~~~~g~~~~iPl~~~v 169 (255)
T 3dd6_A 92 KVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTR--TASITGAYVAMVLAFEKLLQAEKVSKIPVKDYL 169 (255)
T ss_dssp CCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHHHHHHHTTSSSSCCBSSCE
T ss_pred CCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHH--HHHHHHHHHHHHHhhhhhhhcCcccCCCccCce
Confidence 9999999999999999999999766 466999999999999877 99999999999999 99999999
Q ss_pred EEEEEEEECCEEE-EcCCHHHHhcCcccEEEEeecCc-eEEEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3754 213 GVAKVGYIDGKYI-LNPTTEQLKKSHLDLLVAGTEKA-IITVESE--SKQLPEDIILNAIIFGHEKMKIAINAINELVQN 288 (755)
Q Consensus 213 aav~vg~~~g~~v-ldPt~~E~~~s~~~l~va~~~~~-i~mie~~--~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~ 288 (755)
+||++|+++|+++ +|||++|+..+++||+|++++++ |+|+++. +..+++++|.+|+++|++++++|+++|++++++
T Consensus 170 ~avsvg~i~g~~vllDpt~~Ee~~~~~~l~Va~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 249 (255)
T 3dd6_A 170 AATSVGIVEEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALGD 249 (255)
T ss_dssp EEEEEEEETTTEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred eEEEEEEECCEEEEeCCCHHHHhhcCceEEEEEcCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999998 9999985 467999999999999999999999999999988
Q ss_pred hCC
Q psy3754 289 VGQ 291 (755)
Q Consensus 289 ~~~ 291 (755)
.+.
T Consensus 250 ~~~ 252 (255)
T 3dd6_A 250 IVS 252 (255)
T ss_dssp GGG
T ss_pred HHh
Confidence 764
No 27
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=4.1e-39 Score=336.52 Aligned_cols=208 Identities=19% Similarity=0.242 Sum_probs=191.4
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCC----CCCcceeeEEeEeeccccCCCCCCcccccCCCCchh
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS----TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERE 151 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~----~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e 151 (755)
=|++.+++|.+ ++|+|||++++|+|+|||+|++|.++.+ +.++.||+++|.+..||.+++ + +|+|+++|
T Consensus 30 ~R~i~i~~g~~-~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~-----~-~g~~~~~e 102 (250)
T 2je6_B 30 LRSIKIELGVL-KNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDER-----K-NPAPSRRE 102 (250)
T ss_dssp CCCEEEEESCC-SSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSC-----C-CSSCCHHH
T ss_pred cCCeEEEeCCC-CCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCCc-----c-CCCCChhH
Confidence 47999999977 9999999999999999999999876544 678999999999999999876 2 68999999
Q ss_pred hHHHHHhcCcccccccCCCcC--eEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCC
Q psy3754 152 TIISRLIDRPIRPLFPEGYLN--EIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPT 229 (755)
Q Consensus 152 ~l~sRlIdr~lrpl~p~~~~~--~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~~vldPt 229 (755)
++++|+|+|+|||+||.++++ .++|+++||++||+.. .||+|||++||++++|||.++++||++|+++|.+++|||
T Consensus 103 ~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~--~aai~aa~~AL~~a~iP~~~~v~avsvg~~~~~~l~Dpt 180 (250)
T 2je6_B 103 IELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSR--LVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLN 180 (250)
T ss_dssp HHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHTTCCBSSCCEEEEEEEETTEEEESCC
T ss_pred HHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHH--HHHHHHHHHHHHhcCCCccCceEEEEEEEECCEEEeCCC
Confidence 999999999999998876655 8999999999999876 999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccEEEEe--ecCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy3754 230 TEQLKKSHLDLLVAG--TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKK 293 (755)
Q Consensus 230 ~~E~~~s~~~l~va~--~~~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~k 293 (755)
.+|+..++++++|+. +.++|+|++++| ++++++|.+|+++|++++++++++|++.+++..+++
T Consensus 181 ~~Ee~~~~~~l~va~~~~~~~i~~v~~~g-~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~ 245 (250)
T 2je6_B 181 ETEAMWGEADMPIAMMPSLNQVTLFQLNG-SMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEF 245 (250)
T ss_dssp HHHHHHSSEEEEEEEEGGGTEEEEEEEEE-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC--
T ss_pred HHHHhcCCceEEEEEECCCCCEEEEEEEc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999996 566799999998 599999999999999999999999999999887654
No 28
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.1e-39 Score=352.19 Aligned_cols=236 Identities=18% Similarity=0.193 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHccCCcCCCCCCCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEE
Q psy3754 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSF 440 (755)
Q Consensus 361 ~~~~~~~~~r~~~l~~~~R~DGR~~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~ 440 (755)
++..++.++++ .+++|+|+|||.++|+|||.+++| ++||||+|++|+|+|+|+|+ ||... + ....++.|.|
T Consensus 23 ~s~~e~~~i~~-~L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~-~e~~~-p---~~~~~~~g~l 93 (358)
T 2nn6_A 23 LSNCERRFLLR-AIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVS-CELVS-P---KLNRATEGIL 93 (358)
T ss_dssp CCHHHHHHHHH-HHHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEEC-CEEEC-C---CSTTTTSCCE
T ss_pred ccHhHHHHHHH-HHhcCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEE-ecccC-C---cccCCCCcEE
Confidence 45677777777 589999999999999999999999 89999999999999999998 55432 1 2234678999
Q ss_pred EEEeecCCCCcccccCCCCCChhHHHHHHHHHHhccc--cCCCC------CCCceEEEEEEEEEccCCChhhHHHHHHHH
Q psy3754 441 MLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP--VLPNN------NKFNYSIRLVSEITESNGSSSMASVCGGCL 512 (755)
Q Consensus 441 ~~~~~f~p~s~~e~~~~g~~~~rei~~~~lieral~~--vi~~~------~~~p~tI~V~v~VLe~dGs~~~Aav~a~sl 512 (755)
.++|+|+|+|+++++ .|++++++++++++++|+|++ +++++ ..|+|+|+|+++||++|||+++||+||+++
T Consensus 94 ~~~v~~~p~a~~~~~-~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~a 172 (358)
T 2nn6_A 94 FFNLELSQMAAPAFE-PGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIV 172 (358)
T ss_dssp EEEEEECTTTCSSCC-SSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHH
T ss_pred EEEEEecCCcccccc-CCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHH
Confidence 999999999998764 467999999999999999998 44543 348899999999999999999999999999
Q ss_pred HHHhCCCC-----------------------cccceEEEEEEEEecCceEEEEecCCccccccCCccEEEEeecCc-EEE
Q psy3754 513 ALLDAGVP-----------------------ISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITA 568 (755)
Q Consensus 513 AL~daGvP-----------------------i~~~va~vs~gli~~~~~~~vL~Dp~~~Ee~~gd~~~~Va~t~~g-i~a 568 (755)
||+|+|+| ++++|+++++|++..++ .+|+||+..||..++++++|+++.+| |++
T Consensus 173 AL~da~iP~v~~~~~~v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~~--~illDPt~~Ee~~~~~~l~Va~t~~g~I~~ 250 (358)
T 2nn6_A 173 ALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGT--YLLVDPNEREERVMDGLLVIAMNKHREICT 250 (358)
T ss_dssp HHHHCCCCCCBCCTTCCBCCHHHHTSCCCCCBCCCEEEEEEEECTTTS--SEEESCCHHHHHHCSCEEEEEEETTTEEEE
T ss_pred HHHHhCcCcEEeeCCeeEecccccccccccCccCCEEEEEEEEEeeCC--EEEECCCHHHHhhcCccEEEEEcCCCeEEE
Confidence 99999999 99999999999985433 58899999999999999999999987 999
Q ss_pred EEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhccccc
Q psy3754 569 LQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609 (755)
Q Consensus 569 lq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~r 609 (755)
+|+.+. .+++.++|.+|++.|.+++.+|++.|++++..+.
T Consensus 251 lqk~G~-~~ls~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 290 (358)
T 2nn6_A 251 IQSSGG-IMLLKDQVLRCSKIAGVKVAEITELILKALENDQ 290 (358)
T ss_dssp EEEESC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 998654 5689999999999999999999999999998753
No 29
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.4e-39 Score=337.38 Aligned_cols=217 Identities=19% Similarity=0.248 Sum_probs=175.2
Q ss_pred HHccCCcCCCCCCC----CccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCC
Q psy3754 373 ILDKGLRIDNRGVN----DIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPP 448 (755)
Q Consensus 373 ~l~~~~R~DGR~~~----e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p 448 (755)
-+.+|+|+|||.++ |+|||++++|+++++||||+|++|+|+|+|+| +||.+..+.. .. .+...++|+|+|
T Consensus 11 ~~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~g~~~~~~~~---~~--~~~g~l~~~~~p 84 (237)
T 2nn6_D 11 AKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGV-YGPAEVKVSK---EI--FNKATLEVILRP 84 (237)
T ss_dssp ----------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEE-EEEEECC-----------CCEEEEEEEEC
T ss_pred CCccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEE-eCCCcccccc---cC--CCcEEEEEEecC
Confidence 45678999999999 99999999999999999999999999999999 5887654422 22 334577788888
Q ss_pred CCcccccCCCCCChhHHHHHHHHHHhccccCCCCCCCce-EEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEE
Q psy3754 449 FATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY-SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAG 527 (755)
Q Consensus 449 ~s~~e~~~~g~~~~rei~~~~lieral~~vi~~~~~~p~-tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~ 527 (755)
|+ |++++++++|+++++|+|+++++. +.||+ +|+|+++||++|||+++|++||+++||+|||+||+++|++
T Consensus 85 ~~-------g~~~~~e~~~~~li~r~l~~~i~~-~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~a 156 (237)
T 2nn6_D 85 KI-------GLPGVAEKSRERLIRNTCEAVVLG-TLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCG 156 (237)
T ss_dssp SS-------SCCCHHHHHHHHHHHHHHHHHCGG-GCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEE
T ss_pred CC-------CCCCccHHHHHHHHHHHHHHHhch-hcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeee
Confidence 74 568899999999999999999997 67775 7999999999999999999999999999999999999999
Q ss_pred EEEEEEecCceEEEEecCCccccccC--CccEEEEeecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhc
Q psy3754 528 IAMGLIKDGEKVVILSDILGDEDRCG--DMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605 (755)
Q Consensus 528 vs~gli~~~~~~~vL~Dp~~~Ee~~g--d~~~~Va~t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l 605 (755)
+++|++.++ .+++||+..||..+ +|+|++.++.++|+++|+. ++++.++|.+|+++|++++.+|++.|++++
T Consensus 157 vs~g~~~~~---~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~---g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l 230 (237)
T 2nn6_D 157 VACALDSDG---TLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTK---GLYSDTELQQCLAAAQAASQHVFRFYRESL 230 (237)
T ss_dssp EEEEECTTC---CEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEE---ESCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCC---cEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEe---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999544 47899999999875 4555555555679999995 469999999999999999999999999998
Q ss_pred cccc
Q psy3754 606 PKCK 609 (755)
Q Consensus 606 ~~~r 609 (755)
+++.
T Consensus 231 ~~~~ 234 (237)
T 2nn6_D 231 QRRY 234 (237)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8753
No 30
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-39 Score=336.71 Aligned_cols=212 Identities=17% Similarity=0.135 Sum_probs=178.9
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCC----CCCcceeeEEeEeeccccCCCCCCcccccCCCCchh
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS----TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERE 151 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~----~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e 151 (755)
-|++.+++|.++++|+|||++++|+|+|||+|+++.++.+ ..++.||+++|.+..||.++ |.+|||+|++++
T Consensus 22 ~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~----~~~r~g~~~~~~ 97 (246)
T 2wp8_B 22 LRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFE----RSKSSHKNERRV 97 (246)
T ss_dssp CCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC------------------CHHH
T ss_pred ccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccccc----ccccCCCCChhH
Confidence 5899999999954449999999999999999999877432 56889999999999999886 677889999999
Q ss_pred hHHHHHhcCcccccccC-CC-cCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCC
Q psy3754 152 TIISRLIDRPIRPLFPE-GY-LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPT 229 (755)
Q Consensus 152 ~l~sRlIdr~lrpl~p~-~~-~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~~vldPt 229 (755)
++++|+|+|+|||++|. .| +|.++|+++||++||+ +..||+|||++||++++|||+++++||++|+++|.+++|||
T Consensus 98 ~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~--~~~aai~aa~~AL~~a~iP~~~~v~avs~g~~~~~~l~Dp~ 175 (246)
T 2wp8_B 98 LEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGG--IMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTN 175 (246)
T ss_dssp HHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSC--HHHHHHHHHHHHHHHHTCCBSSCEEEEEEEEETTEEESSCC
T ss_pred HHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCC--HHHHHHHHHHHHHHHcCCcccCceeEEEEEEECCEEEECCC
Confidence 99999999999999996 44 7889999999999998 45999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccEEEEe--ecCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q psy3754 230 TEQLKKSHLDLLVAG--TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVN 295 (755)
Q Consensus 230 ~~E~~~s~~~l~va~--~~~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~k~~ 295 (755)
.+|+ .++++|+|+. +.++|+|+++++ .+++++|.+|+++|++++++++++|++.+++.+++..+
T Consensus 176 ~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g-~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~ 241 (246)
T 2wp8_B 176 SLEE-NAMSTVTLGVVGKSEKLSLLLVED-KIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKRVS 241 (246)
T ss_dssp HHHH-HHSEEEEEEEETTSSCEEEEEECS-CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred chhh-ccCceEEEEEeCCCCCEEEEEecC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999 9999999965 566799999988 59999999999999999999999999999998876543
No 31
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-38 Score=334.86 Aligned_cols=217 Identities=22% Similarity=0.251 Sum_probs=190.6
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCC-CC--CCCCcceeeEEeEeeccccCCCCCCccccc---CCCCc
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKD-PT--STYNFFPLTVDYIEKAYAAGRIPGSFFKRE---GKPSE 149 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~-~~--~~~~f~pl~v~y~e~~~a~g~ip~~~~kRe---g~p~~ 149 (755)
-|++.+++|.+ ++|+|||++++|+|+|||+|+++.+ |+ .+.+...|+|+|.+..||. ++|.+|| |+|++
T Consensus 16 ~R~i~i~~g~~-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~----~~~~~Re~~~G~~~~ 90 (262)
T 3b4t_A 16 LRPVIITRGFT-ENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSAT----HSRSDRESVRGRLSG 90 (262)
T ss_dssp CCCEEEEETSS-SSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGS----SSCCCCHHHHTSCCH
T ss_pred cCCeEEEeCCc-CCCCeEEEEEECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCcc----ccccccccCCCCCCH
Confidence 58999999976 9999999999999999999999776 32 1133445899999999998 4678888 99999
Q ss_pred hhhHHHHHhcCcccccccCCCcC--eEEEEEEEEecCCCCChhhHHHHHHHHHhhcC------------CCCCCCCeEEE
Q psy3754 150 RETIISRLIDRPIRPLFPEGYLN--EIQIVVYVLSVNPQIDPDIASIIGVSTALSIS------------ELPFLGPLGVA 215 (755)
Q Consensus 150 ~e~l~sRlIdr~lrpl~p~~~~~--~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s------------~IP~~~~vaav 215 (755)
++++++|+|+|+|||+||.++++ .++|+|+||++||+ +..||+|||++||+++ +|||+++++||
T Consensus 91 ~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~--~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~~~~v~av 168 (262)
T 3b4t_A 91 RTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGG--TRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAV 168 (262)
T ss_dssp HHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSC--HHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCBCSCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCC--HHHHHHHHHHHHHHHhhhhhccCCccccCCcccCceeEE
Confidence 99999999999999999977655 45556999999998 5699999999999999 99999999999
Q ss_pred EEEEECCEEEEcCCHHHHhcCcccEEEEeecCc-eEEEEcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy3754 216 KVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVESES--KQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQK 292 (755)
Q Consensus 216 ~vg~~~g~~vldPt~~E~~~s~~~l~va~~~~~-i~mie~~~--~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~ 292 (755)
++|+++|++++|||.+|+..++++|+|+++.++ ++|+++.| ..+++++|.+|+++|++++++++++|++++++..++
T Consensus 169 svg~~~g~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 248 (262)
T 3b4t_A 169 SVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPG 248 (262)
T ss_dssp EEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred EEEEECCEEEECCCHHHHhccCceEEEEEcCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 999999999999999999999999999999864 99999987 589999999999999999999999999999887766
Q ss_pred cccCCCC
Q psy3754 293 KVNWDPI 299 (755)
Q Consensus 293 k~~~~~~ 299 (755)
...+.++
T Consensus 249 ~~~~~~~ 255 (262)
T 3b4t_A 249 VLPQGPP 255 (262)
T ss_dssp CCC----
T ss_pred cCccCCC
Confidence 6655544
No 32
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6.9e-37 Score=323.46 Aligned_cols=203 Identities=22% Similarity=0.252 Sum_probs=185.8
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEE-ecCCCCC-CCCcceeeEEeEeeccccCCCCCCcccccCCCCchhhH
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVV-SCKDPTS-TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETI 153 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~-~~~~~~~-~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e~l 153 (755)
-|++.+++|.+ ++|+|||++++|+|+|||+|+ ++.+|++ +.++.+|+++|....||.++ +|+|+|++++++
T Consensus 34 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~------~~~g~~~~~~~~ 106 (271)
T 2wnr_A 34 FRDISIETGVI-SKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPT------FEPGPPDERSVE 106 (271)
T ss_dssp CCCEEEEESCS-TTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECGGGCTT------CCCSSCCHHHHH
T ss_pred ccCeEEEeCcc-CCCCeEEEEEECCeEEEEEEEeeeecCCCCCCCceEEEEEEEeCCccccc------ccCCCCchHHHH
Confidence 58999999999 899999999999999999999 4556654 56899999999999999876 467999999999
Q ss_pred HHHHhcCcccc--ccc-CC-------CcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCC------------------
Q psy3754 154 ISRLIDRPIRP--LFP-EG-------YLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE------------------ 205 (755)
Q Consensus 154 ~sRlIdr~lrp--l~p-~~-------~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~------------------ 205 (755)
++|+|+|+||| +|| +. ++|.++|+++||++||+ +..||+|||++||++++
T Consensus 107 ~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~--~~~aai~aa~~AL~~a~~p~~~~~~~~~~~~~~~~ 184 (271)
T 2wnr_A 107 LSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGN--LFDAAVLATVAALLDTRIPAAEVEDGEVVINREKM 184 (271)
T ss_dssp HHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSC--HHHHHHHHHHHHHHHCEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCC--HHHHHHHHHHHHHHhcCCCeEEecCCceeeccCcc
Confidence 99999999999 677 43 47999999999999998 55999999999999999
Q ss_pred --CCCCCCeEEEEEEEECCEEEEcCCHHHHhcCcccEEEEeecCc-eEEEEcCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3754 206 --LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVESES-KQLPEDIILNAIIFGHEKMKIAINA 281 (755)
Q Consensus 206 --IP~~~~vaav~vg~~~g~~vldPt~~E~~~s~~~l~va~~~~~-i~mie~~~-~~~se~~~~~al~~a~~~~~~i~~~ 281 (755)
|||+++++||++|+++|.+++|||.+|+..++++++|++++++ ++|+++.| .++++++|.+|+++|++++++++++
T Consensus 185 ~~ip~~~~~~avt~g~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~i~~~ 264 (271)
T 2wnr_A 185 QPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVSIAVEKVPQLIEY 264 (271)
T ss_dssp EECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEEESSSCBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccCCeEEEEEEEECCEEEeCCCHHHHhcCCCcEEEEEeCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999854 99999875 6899999999999999999999999
Q ss_pred HHHHHH
Q psy3754 282 INELVQ 287 (755)
Q Consensus 282 ~~~~~~ 287 (755)
|++.++
T Consensus 265 ~~~~l~ 270 (271)
T 2wnr_A 265 LDKSMT 270 (271)
T ss_dssp HHHHC-
T ss_pred HHHHhC
Confidence 998753
No 33
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.2e-39 Score=338.66 Aligned_cols=208 Identities=13% Similarity=0.153 Sum_probs=188.0
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCCC---------------CCcceeeEEeEeeccccCCCCCCc
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTST---------------YNFFPLTVDYIEKAYAAGRIPGSF 140 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~~---------------~~f~pl~v~y~e~~~a~g~ip~~~ 140 (755)
-|++.+|+|.++ +|+|||++++|+|+|||+|+++.++++. .++.||+|+|.++.||.++
T Consensus 36 ~R~i~i~~g~l~-~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~----- 109 (272)
T 2nn6_F 36 LRPVYARAGLLS-QAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRR----- 109 (272)
T ss_dssp CCCCCCCCSCCS-SSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEEEEEECTTSSSS-----
T ss_pred cCCeEEEeCCCC-CCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEEEEEecCCCcCC-----
Confidence 589999999994 9999999999999999999999876553 3579999999999999987
Q ss_pred ccccCCCCchhhHHHHHhcCcccccccCCC--cCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEE
Q psy3754 141 FKREGKPSERETIISRLIDRPIRPLFPEGY--LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVG 218 (755)
Q Consensus 141 ~kReg~p~~~e~l~sRlIdr~lrpl~p~~~--~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg 218 (755)
+|+|+|+++|++++|+|+|+|||+++.+. +|.++|+++||++||+ +..||+|||++||++++|||.++|+||++|
T Consensus 110 -~~~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~--~~~aai~aa~~AL~da~iP~~~~v~avsvg 186 (272)
T 2nn6_F 110 -RRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGS--ALAAALTAAALALADAGVEMYDLVVGCGLS 186 (272)
T ss_dssp -CCCSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSS--HHHHHHHHHHHHHHHHCCCBSSCCEEEECC
T ss_pred -ccCCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCC--HHHHHHHHHHHHHHHcCCcccCcEEEEEEE
Confidence 45689999999999999999999766443 4699999999999997 559999999999999999999999999999
Q ss_pred E---ECCEEEEcCCHHHHhcCcccEEEE--eecCceEEEEcCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy3754 219 Y---IDGKYILNPTTEQLKKSHLDLLVA--GTEKAIITVESESKQLPE-DIILNAIIFGHEKMKIAINAINELVQNVGQK 292 (755)
Q Consensus 219 ~---~~g~~vldPt~~E~~~s~~~l~va--~~~~~i~mie~~~~~~se-~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~ 292 (755)
+ ++|.+|+|||.+|+..++++|+|+ ++.++|+|+|++| .+++ ++|.+|+++|++++++++++|++++++.+++
T Consensus 187 ~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g-~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 265 (272)
T 2nn6_F 187 LAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSG-EGGLTESWAEAVRLGLEGCQRLYPVLQQSLVRAARR 265 (272)
T ss_dssp CCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEEC-CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeccCCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEec-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 899999999999999999999999 5667799999998 5999 9999999999999999999999999988764
Q ss_pred c
Q psy3754 293 K 293 (755)
Q Consensus 293 k 293 (755)
+
T Consensus 266 ~ 266 (272)
T 2nn6_F 266 R 266 (272)
T ss_dssp H
T ss_pred h
Confidence 4
No 34
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=1e-36 Score=318.91 Aligned_cols=203 Identities=19% Similarity=0.259 Sum_probs=184.2
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCC----CCCcceeeEEeEeeccccCCCCCCcccccCCCCchh
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS----TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERE 151 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~----~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e 151 (755)
=|++.+++|.+ ++|+|||++++|+|+|||+|+||.++.+ ..+..+|+++|....|+.+. +|.|+|++++
T Consensus 26 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~------r~~~~~~~re 98 (258)
T 3m7n_D 26 LRPIKIEASVL-KRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEE------RKRPGPDRRS 98 (258)
T ss_dssp CCCEEEEECCC-SSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSS------CCCSSCCHHH
T ss_pred ccCeEEEECCC-CCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCccccc------ccCCCCCHHH
Confidence 37899999999 8999999999999999999998776543 34567799999888777754 2347899999
Q ss_pred hHHHHHhcCccccccc-CCC-cCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCC
Q psy3754 152 TIISRLIDRPIRPLFP-EGY-LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPT 229 (755)
Q Consensus 152 ~l~sRlIdr~lrpl~p-~~~-~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~~vldPt 229 (755)
++++|+|+|+|||+++ +.| +|.++|+|+||++||+.. .||+|||++||++++|||+++|+||++|+++|++++|||
T Consensus 99 ~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~--~Aai~aa~lAL~dagiP~~~~v~avsvg~i~~~~llDpt 176 (258)
T 3m7n_D 99 IEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSR--TACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPM 176 (258)
T ss_dssp HHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHH--HHHHHHHHHHHHHTTCCBSSEEEEEEEEEETTEEEESCC
T ss_pred HHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHH--HHHHHHHHHHHHhcCCCCCCceEEEEEEEECCEEEECCC
Confidence 9999999999999884 666 788999999999999875 999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccEEEEe-ec----CceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3754 230 TEQLKKSHLDLLVAG-TE----KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQN 288 (755)
Q Consensus 230 ~~E~~~s~~~l~va~-~~----~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~ 288 (755)
.+|+..+++|++|++ +. ++|+++++.| .+++++|.+|+++|+++|++|+++|++.+.+
T Consensus 177 ~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g-~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 239 (258)
T 3m7n_D 177 KEEDNFGEADMPFAFLIRNGKIESIALLQMDG-RMTRDEVKQAIELAKKGALQIYEMQREAILR 239 (258)
T ss_dssp HHHHHHSSEEEEEEEEEETTEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCceEEEEEEcCCCCCCCEEEEEecC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 54 5699999998 6999999999999999999999999998875
No 35
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=8.8e-37 Score=320.45 Aligned_cols=201 Identities=18% Similarity=0.193 Sum_probs=181.2
Q ss_pred CCeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecC-CCCC-CCCcceeeEEeEeeccccCCCCCCcccccCCCCchhh
Q psy3754 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCK-DPTS-TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERET 152 (755)
Q Consensus 75 ~~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~-~~~~-~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e~ 152 (755)
.-|++.+++|.+ ++|+|||++++|+|+|||+|+++. +|.. +.+..+|+++|....||.+++ |+|+|+++++
T Consensus 31 e~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~------~~g~~~~~~~ 103 (259)
T 3m7n_G 31 EFRKVEIIPNVI-EKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTF------EPGPPDENSI 103 (259)
T ss_dssp CCCCEEEEETSS-TTSSEEEEEEETTEEEEEEEEEEEECCCSSCTTSCEEEEEEECCTTSCTTC------CSSSSCHHHH
T ss_pred cccCeEEEeCCc-CCCCceEEEEECCcEEEEEEEecccCCCCCCCCceEEEEEEEeCCcccccc------cCCCCChHHH
Confidence 469999999999 899999999999999999999743 3422 345568999999999999863 4699999999
Q ss_pred HHHHHhcCcccc--c--------ccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCC-------------CCC
Q psy3754 153 IISRLIDRPIRP--L--------FPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISEL-------------PFL 209 (755)
Q Consensus 153 l~sRlIdr~lrp--l--------~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~I-------------P~~ 209 (755)
+++|+|+|+||| + +|+.|+|.++|+++||++||+.. .||+|||++||++++| ||.
T Consensus 104 ~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~--~aai~aa~~AL~~a~iP~~~~~~~~~~~lp~~ 181 (259)
T 3m7n_G 104 ELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLL--DASALAAIAALMNTKVPAERFDLGEDYLLPVR 181 (259)
T ss_dssp HHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHH--HHHHHHHHHHHHTCEECTGGGTSSSCEECCBC
T ss_pred HHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHH--HHHHHHHHHHHHhCCCCeEEecCCceeccccc
Confidence 999999999999 2 57888999999999999999765 8999999999999999 799
Q ss_pred CCeEEEEEEEECCEEEEcCCHHHHhcCcccEEEEeecC-ceEEEEcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3754 210 GPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK-AIITVESES-KQLPEDIILNAIIFGHEKMKIAINAINE 284 (755)
Q Consensus 210 ~~vaav~vg~~~g~~vldPt~~E~~~s~~~l~va~~~~-~i~mie~~~-~~~se~~~~~al~~a~~~~~~i~~~~~~ 284 (755)
++++||++|+++|++++|||.+|+..++++|+|+++++ .+++++..| .++++++|.+|+++|+++++++++++++
T Consensus 182 ~~~~avtvg~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~l~~~~~~ 258 (259)
T 3m7n_G 182 DLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLREKFKE 258 (259)
T ss_dssp CCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEECTTSCEEEEEEESSCCBCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CceeEEEEEEECCEEEECCCHHHHhhCCCcEEEEEeCCCcEEEEECCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988 488888754 7899999999999999999999998865
No 36
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=1.9e-36 Score=320.99 Aligned_cols=202 Identities=20% Similarity=0.206 Sum_probs=184.3
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEe-cCCCCC-CCCcceeeEEeEeeccccCCCCCCcccccCCCCchhhH
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVS-CKDPTS-TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETI 153 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~-~~~~~~-~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e~l 153 (755)
-|++.+++|.+ ++|+|||++++|+|+|||+|++ +.+|.. +.++.+|+++|....||.++ +|+|+|++++++
T Consensus 39 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~------~~~g~~~~~~~~ 111 (277)
T 2je6_A 39 YRPLSITLDYA-KKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYET------FEPGPPDENAIE 111 (277)
T ss_dssp CCCEEEEETCS-TTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECTTSCTT------CCCSSCCHHHHH
T ss_pred ccCeEEEeCCc-CCCCeEEEEEECCeEEEEEEEeeeeCCCCCCCCccEEEEEEEeCCccCcc------cccCCCChHHHH
Confidence 58999999999 8999999999999999999995 445543 56889999999999998864 356999999999
Q ss_pred HHHHhcCcccc---cccCC-------CcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCC------------------
Q psy3754 154 ISRLIDRPIRP---LFPEG-------YLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE------------------ 205 (755)
Q Consensus 154 ~sRlIdr~lrp---l~p~~-------~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~------------------ 205 (755)
++|+|+|+||| ++++. ++|.++|+++||++||+.. .||+|||++||++++
T Consensus 112 is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~--~aai~aa~~AL~~a~~p~v~~~~~~~~~~~~~~ 189 (277)
T 2je6_A 112 LARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVL--DACTLASVAALYNTKVYKVEQHSNGISVNKNEV 189 (277)
T ss_dssp HHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHH--HHHHHHHHHHHHTCEEEEEECC---CEEEEEEE
T ss_pred HHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHH--HHHHHHHHHHHHhcCCCeEEecCCcceEeccCc
Confidence 99999999999 55655 4899999999999999764 999999999999999
Q ss_pred ---CCCCCCeEEEEEEEECCEEEEcCCHHHHhcCcccEEEEeecC-ceEEEEcCC-CCCCHHHHHHHHHHHHHHHHHHHH
Q psy3754 206 ---LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK-AIITVESES-KQLPEDIILNAIIFGHEKMKIAIN 280 (755)
Q Consensus 206 ---IP~~~~vaav~vg~~~g~~vldPt~~E~~~s~~~l~va~~~~-~i~mie~~~-~~~se~~~~~al~~a~~~~~~i~~ 280 (755)
|||+++++||++|+++|.+++|||.+|+..++++++|+++++ .++|+++.| .++++++|.+|+++|+++++++++
T Consensus 190 ~~~ip~~~~~~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~~g~~~~~~~~l~~~l~~A~~~~~~i~~ 269 (277)
T 2je6_A 190 VGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLE 269 (277)
T ss_dssp EEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEECTTCCEEEEEEESSSCEEHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCeEEEEEEEECCEEecCCCHHHHhcCCCcEEEEEeCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986 499999864 579999999999999999999999
Q ss_pred HHHHHH
Q psy3754 281 AINELV 286 (755)
Q Consensus 281 ~~~~~~ 286 (755)
+|++++
T Consensus 270 ~~~~~l 275 (277)
T 2je6_A 270 ELKKHL 275 (277)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 37
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=7.4e-40 Score=335.97 Aligned_cols=201 Identities=13% Similarity=0.132 Sum_probs=161.7
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCC---CCCcceeeEEeEeeccccCCCCCCcccccCCCCchhh
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS---TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERET 152 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~---~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e~ 152 (755)
=|++++|+|.+ .+|||||++++|+|+|||+|++|.++++ ..+++||+|+|.++ .|+|+++
T Consensus 5 ~R~i~ie~g~l-~~A~GSa~v~~G~T~Vl~~V~~~~e~~~~~~~~~~~~l~v~~~p~--------------~G~~~~~-- 67 (222)
T 3krn_A 5 LREMRCELSFL-KNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRAN--------------CGDNKFN-- 67 (222)
T ss_dssp CCCBCCBSCCC-----CCCBCCBTTCEEECCCCSSCC-------------CCCSSCC--------------CC--CCS--
T ss_pred ccceEEEECCC-CCCCeEEEEEECCcEEEEEEECCCCCcccccCCceEEEEEEEcCC--------------CCCCCHH--
Confidence 38999999999 6899999999999999999999987653 45789999999743 1566665
Q ss_pred HHHHHhcCcccccccCCC--cCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCCH
Q psy3754 153 IISRLIDRPIRPLFPEGY--LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTT 230 (755)
Q Consensus 153 l~sRlIdr~lrpl~p~~~--~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~~vldPt~ 230 (755)
+++|+|+|+|||+++... +|.++|+++||++||+. .+||+|||++||++|||||+++|+||++|++||++++|||.
T Consensus 68 e~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~--~~aai~aa~~AL~dagiP~~~~v~avsvg~~~g~~llDpt~ 145 (222)
T 3krn_A 68 VLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSM--GAVAINGACFALLDNGMPFETVFCGVLIVRVKDELIIDPTA 145 (222)
T ss_dssp SCTTHHHHC--CCSCC-----CCCCCCCEEEECCSCH--HHHHHHGGGTTTTTTTCCTTSCCCCCCCEECSSSEESSCCT
T ss_pred HHHHHHHHHHHHhccHHhCCCcEEEEEEEEEECCCCh--HHHHHHHHHHHHHHCCCCccCcEEEEEEEEECCEEEeCCCH
Confidence 889999999999666444 35899999999999986 49999999999999999999999999999999999999999
Q ss_pred HHHhcCcccEEEEe-----ecCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Q psy3754 231 EQLKKSHLDLLVAG-----TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW 296 (755)
Q Consensus 231 ~E~~~s~~~l~va~-----~~~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~k~~~ 296 (755)
+|+..+++||+|++ +.++|+|+|++| .+++++|.+|+++|+++|++++++|++.+++..+..+..
T Consensus 146 ~Ee~~~~~~l~va~~~~~~~~~~i~~vq~~g-~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~~~~~~~ 215 (222)
T 3krn_A 146 KQEAASTGRVLFSVCKGSDGHPEVCAMDAIG-HWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVDEQL 215 (222)
T ss_dssp TTTTSCC-CCCCEECCCSSSSCCEEEECCBS-SCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhccCccEEEEEEccCCCCCCEEEEEEeC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 99999999999998 456799999998 599999999999999999999999999999877655544
No 38
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=1.9e-36 Score=314.35 Aligned_cols=202 Identities=25% Similarity=0.239 Sum_probs=176.9
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCC---CCCcceeeEEeEeeccccCCCCCCcc---ccc---CC
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS---TYNFFPLTVDYIEKAYAAGRIPGSFF---KRE---GK 146 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~---~~~f~pl~v~y~e~~~a~g~ip~~~~---kRe---g~ 146 (755)
=|++.+++|.+ ++|+|||++++|+|+|||+|+++.+.+. +.+..+|+++|. ..|+++. +|| |+
T Consensus 12 ~R~i~i~~g~~-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~-------~~p~~~~~r~~Re~~~G~ 83 (239)
T 1r6l_A 12 LRPIRITRHYT-KHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYG-------MLPRSTGERNQREASRGK 83 (239)
T ss_dssp CCCEEEESSCS-SSSSEEEEEEETTEEEEEEEEEEESCSSCCC---CCEEEEEEE-------ECTTSSSSCCCCHHHHTS
T ss_pred cCCeEEEeCCc-CCCCeEEEEEECCEEEEEEEEccCccCCccCCCCcEEEEEEEE-------eCCCccccccccccCCCC
Confidence 48999999987 9999999999999999999999775421 123345999994 3455555 456 89
Q ss_pred CCchhhHHHHHhcCcccccccCCCcCe--EEEEEEEEecCCCCChhhHHHHHHHHHhhcCC-----------CCCCCCeE
Q psy3754 147 PSERETIISRLIDRPIRPLFPEGYLNE--IQIVVYVLSVNPQIDPDIASIIGVSTALSISE-----------LPFLGPLG 213 (755)
Q Consensus 147 p~~~e~l~sRlIdr~lrpl~p~~~~~~--~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~-----------IP~~~~va 213 (755)
|++++++++|+|+|+|||+||.+++++ ++|+|+||++||+.. .||+|||++||++++ |||+++++
T Consensus 84 ~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~--~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~~ 161 (239)
T 1r6l_A 84 QGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTR--TASITGATVALIDALAVLKKRGALKGNPLKQMVA 161 (239)
T ss_dssp CCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCEE
T ss_pred CcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHH--HHHHHHHHHHHHHhcchhcccCcccccCccCcee
Confidence 999999999999999999999877655 899999999999864 999999999999777 99999999
Q ss_pred EEEEEEECCEEEEcCCHHHHhcCcccEEEEeecCc-eEEEEc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3754 214 VAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVES--ESKQLPEDIILNAIIFGHEKMKIAINAINELVQ 287 (755)
Q Consensus 214 av~vg~~~g~~vldPt~~E~~~s~~~l~va~~~~~-i~mie~--~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~ 287 (755)
||++|+++|++++|||.+|+..++.+++|++++++ ++.++. ++.++++++|.+|+++|++++++++++|+++++
T Consensus 162 avs~g~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 238 (239)
T 1r6l_A 162 AVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 (239)
T ss_dssp EEEEEEETTEEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCEEEECCCHHHHhcCCceEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887 676764 346899999999999999999999999999874
No 39
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=2.8e-35 Score=307.31 Aligned_cols=202 Identities=21% Similarity=0.319 Sum_probs=183.8
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCC----CCCcceeeEEeEeeccccCCCCCCcccccCCCCchh
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS----TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERE 151 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~----~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e 151 (755)
-|++.+++|.+ ++|+|||++++|+|+|||+|++|.+..+ +.++.+|+++|....||.+.. +.++|++++
T Consensus 26 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~------~~~~~~~~~ 98 (249)
T 2po1_A 26 LRPIKMEVGVL-KNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEER------KKPGPDRRS 98 (249)
T ss_dssp CCCEEEEECCC-SSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSSC------CCSSCCHHH
T ss_pred ccCEEEEeCCc-CCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccccc------cCCCCCHHH
Confidence 47999999999 8999999999999999999999766543 568899999999999998753 135699999
Q ss_pred hHHHHHhcCcccc-----cccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEE
Q psy3754 152 TIISRLIDRPIRP-----LFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYIL 226 (755)
Q Consensus 152 ~l~sRlIdr~lrp-----l~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~~vl 226 (755)
++++|+|+|+||| +||+ |.++|+++||++||+. ..||+|||++||++++|||.++++||++|+++|.+++
T Consensus 99 ~~~s~li~r~l~~~i~l~~~p~---~~i~I~~~VL~~dG~~--~~aai~aa~~AL~da~iP~~~~v~avs~g~~~~~~l~ 173 (249)
T 2po1_A 99 IEISKVIKGALEPALILEMFPR---TAIDVFIEVLQADAGT--RVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVL 173 (249)
T ss_dssp HHHHHHHHHHHGGGBCGGGSTT---EEEEEEEEEEECCSCH--HHHHHHHHHHHHHHTTCCBSSCCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhhccHHHCCC---CEEEEEEEEEecCCCH--HHHHHHHHHHHHHhcCCCccCceEEEEEEEECCEEEe
Confidence 9999999999999 4553 6899999999999985 4999999999999999999999999999999999999
Q ss_pred cCCHHHHhcCcccEEEEe--ecCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy3754 227 NPTTEQLKKSHLDLLVAG--TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG 290 (755)
Q Consensus 227 dPt~~E~~~s~~~l~va~--~~~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~ 290 (755)
|||.+|+..++.+++|++ +.+++++++..| ++++++|.+|+++|++++++++++|++.+.+..
T Consensus 174 Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g-~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 238 (249)
T 2po1_A 174 DLNKEEDNYGEADVPVAIMPLKNDITLLQMDG-YLTKDEFIEAVKLAIKGAKAVYQKQREALKEKY 238 (249)
T ss_dssp SCCHHHHHTCSEEEEEEEEGGGTEEEEECCEE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHhccCCceEEEEEECCCCCEEEEEEEc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 566799999998 499999999999999999999999999987664
No 40
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.9e-36 Score=316.48 Aligned_cols=204 Identities=17% Similarity=0.204 Sum_probs=186.8
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCC-CCC-CCCcceeeEEeEeeccccCCCCCCcccccCCCCchhhH
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKD-PTS-TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETI 153 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~-~~~-~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e~l 153 (755)
-|++.+++|.+ ++|+|||++++|+|+|||+|+++.. |+. ..++.+|+++|....||.+++ |+|+|++++++
T Consensus 34 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~------~~g~~~~~~~~ 106 (278)
T 2nn6_C 34 FRTTTVNIGSI-STADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRF------RSGPPGEEAQV 106 (278)
T ss_dssp CCSCCEEETCC-SSSSEEEEEEETTEEEEEEEEEEECCCCSSSTTCCCCEEEEECCSSSCTTS------CSSSCCHHHHH
T ss_pred ccCeEEEeCCc-cCCCceEEEEeCCeEEEEEEEEEeecCCCCCCCccEEEEEEEeCCccCccc------cCCCCcHHHHH
Confidence 58999999999 8999999999999999999999765 332 248899999999999998863 56999999999
Q ss_pred HHHHhcCcccc--cc--------cCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCC-----------------
Q psy3754 154 ISRLIDRPIRP--LF--------PEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISEL----------------- 206 (755)
Q Consensus 154 ~sRlIdr~lrp--l~--------p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~I----------------- 206 (755)
++|+|+|+||| +| |+.|+|.++|+++||++||+.. .||+|||++||++++|
T Consensus 107 ~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~--~aai~aa~~AL~~a~iP~v~~~~~~~~~~~~~~ 184 (278)
T 2nn6_C 107 ASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNIL--DACTFALLAALKNVQLPEVTINEETALAEVNLK 184 (278)
T ss_dssp HHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTT--HHHHHHHHHHHHTCCCCCCCBCSSSBCCCTTSC
T ss_pred HHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHH--HHHHHHHHHHHHhCCCCeEEEeCCCcceecCcc
Confidence 99999999995 65 6789999999999999999976 9999999999999997
Q ss_pred -----CCCCCeEEEEEEEECC-EEEEcCCHHHHhcCcccEEEEeecCc-eEEEEcCC-CCCCHHHHHHHHHHHHHHHHHH
Q psy3754 207 -----PFLGPLGVAKVGYIDG-KYILNPTTEQLKKSHLDLLVAGTEKA-IITVESES-KQLPEDIILNAIIFGHEKMKIA 278 (755)
Q Consensus 207 -----P~~~~vaav~vg~~~g-~~vldPt~~E~~~s~~~l~va~~~~~-i~mie~~~-~~~se~~~~~al~~a~~~~~~i 278 (755)
||.++++||++|+++| .+++|||.+|+..++++|+|++++++ ++|+++.| ..+++++|.+|+++|+++++++
T Consensus 185 ~~~~lp~~~~~~avs~g~~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~~g~~~~~~~~l~~~l~~a~~~~~~i 264 (278)
T 2nn6_C 185 KKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEV 264 (278)
T ss_dssp CCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEEECTTCCEEEEEESCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCceEEEEEEEECCceEEECCCHHHHhhcCceEEEEEcCCCcEEEEEccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998 99999999999999999999999885 99999877 4799999999999999999999
Q ss_pred HHHHHHHHHH
Q psy3754 279 INAINELVQN 288 (755)
Q Consensus 279 ~~~~~~~~~~ 288 (755)
+++|++.+++
T Consensus 265 ~~~~~~~l~~ 274 (278)
T 2nn6_C 265 KKLMDEVIKS 274 (278)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHHh
Confidence 9999987764
No 41
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=9e-36 Score=312.01 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=178.4
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCC---CCCCcceeeEEeEeeccccCCCCCCccc---cc---CC
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPT---STYNFFPLTVDYIEKAYAAGRIPGSFFK---RE---GK 146 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~---~~~~f~pl~v~y~e~~~a~g~ip~~~~k---Re---g~ 146 (755)
-|++.+++|.+ ++|+|||++++|+|+|||+|+++.+.+ ++.+..+|+++|.. .|+++.+ || |+
T Consensus 11 ~R~i~i~~g~~-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~-------~P~a~~~r~~Re~~~G~ 82 (255)
T 1udn_A 11 LRPVSIQRDFL-EYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSM-------LPRATQQRTIRESVQGR 82 (255)
T ss_dssp CCCEEEEECCS-SSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEE-------CSCCTTSCCCCSSTTCS
T ss_pred ccCeEEEECCC-CCCCEEEEEEECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEc-------CCCccccccccccCCCC
Confidence 48999999977 899999999999999999999987542 12233459999953 4555444 46 88
Q ss_pred CCchhhHHHHHhcCcccccccCCCcCe--EEEEEEEEecCCCCChhhHHHHHHHHHhhcCC-----------CCCCCCeE
Q psy3754 147 PSERETIISRLIDRPIRPLFPEGYLNE--IQIVVYVLSVNPQIDPDIASIIGVSTALSISE-----------LPFLGPLG 213 (755)
Q Consensus 147 p~~~e~l~sRlIdr~lrpl~p~~~~~~--~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~-----------IP~~~~va 213 (755)
|++++++++|+|+|+|||+||.+++++ ++|+|+||++||+.. .||+|||++||++++ |||+++++
T Consensus 83 ~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~--~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v~ 160 (255)
T 1udn_A 83 IGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTR--TAAITGAFVAVADAIIKLHKEGIIEETPIKDFVA 160 (255)
T ss_dssp CCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHH--HHHHHHHHHHHHhhcchhcccCcccCCCccCcee
Confidence 999999999999999999999776554 999999999999875 999999999999888 99999999
Q ss_pred EEEEEEECCEEEEcCCHHHHhcCcccEEEEeecCc-eEEEEc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3754 214 VAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVES--ESKQLPEDIILNAIIFGHEKMKIAINAINELVQN 288 (755)
Q Consensus 214 av~vg~~~g~~vldPt~~E~~~s~~~l~va~~~~~-i~mie~--~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~ 288 (755)
||++|+++|++++|||.+|+..++.+|+|+++.++ ++.++. ++..+++++|.+|+++|++++++++++|++.+++
T Consensus 161 avsvg~~~g~~llDpt~~Ee~~~~~~l~va~~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 161 AVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp EEEEEEETTEEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEEEEECCEEEECCCHHHHhhCCCCEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887 666664 3468999999999999999999999999998875
No 42
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=9.3e-36 Score=310.22 Aligned_cols=207 Identities=20% Similarity=0.195 Sum_probs=170.5
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCC---CCCCcceeeEEeEeeccccCCCCCCccccc---CCCCc
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPT---STYNFFPLTVDYIEKAYAAGRIPGSFFKRE---GKPSE 149 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~---~~~~f~pl~v~y~e~~~a~g~ip~~~~kRe---g~p~~ 149 (755)
=|++.+++|.+ ++|+|||++++|+|+|+|+|+++.+.+ .+.++.+|+++|....||.+.+ .+|| |+|++
T Consensus 11 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~----~~Re~~~G~~~~ 85 (245)
T 1oys_A 11 LRPITFDLDFI-SHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQ----TIQESSKGKISG 85 (245)
T ss_dssp CCCEEEECC------CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC-----------------------C
T ss_pred cCCeEEEeCCC-CCCCEEEEEEECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCccc----ccccccCCCCch
Confidence 48999999999 789999999999999999999987643 3568889999999999888754 6776 88999
Q ss_pred hhhHHHHHhcCcccccccCC--CcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCC-----------CCCCCCeEEEE
Q psy3754 150 RETIISRLIDRPIRPLFPEG--YLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE-----------LPFLGPLGVAK 216 (755)
Q Consensus 150 ~e~l~sRlIdr~lrpl~p~~--~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~-----------IP~~~~vaav~ 216 (755)
++++++|+|+|+|||+++.. +.+.++|+|+||++||+.. .||+|||++||++++ |||+++++||+
T Consensus 86 ~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~--~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v~avs 163 (245)
T 1oys_A 86 RTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTR--TASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAIS 163 (245)
T ss_dssp HHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHH--HHHHHHHHHHHHhccchhcccCcccccCCCCceeEEE
Confidence 99999999999999999865 5779999999999999855 999999999999999 99999999999
Q ss_pred EEEECCEEE-EcCCHHHHhcCcccEEEEeecCc-eEEEEcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3754 217 VGYIDGKYI-LNPTTEQLKKSHLDLLVAGTEKA-IITVESES--KQLPEDIILNAIIFGHEKMKIAINAINELVQNV 289 (755)
Q Consensus 217 vg~~~g~~v-ldPt~~E~~~s~~~l~va~~~~~-i~mie~~~--~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~ 289 (755)
+|+++|+++ +|||.+|+..++.+++|+++.++ ++++++.| ..+++++|.+|+++|++++++++++|++.+++.
T Consensus 164 ~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~~~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 240 (245)
T 1oys_A 164 VGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLGDS 240 (245)
T ss_dssp EEEETTTEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEECCEEEEecCCHHHHhcCCCcEEEEEcCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998 99999999999999999999887 99999765 579999999999999999999999999988765
No 43
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=6.8e-36 Score=310.68 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=171.1
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCC-CCCcceeeEEeEeeccccCCCCCCcccccCCCCchhhHH
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS-TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETII 154 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~-~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e~l~ 154 (755)
=|++++|+|.+ ++|+|||++++|+|+|||+|++|.+..+ ...+.+.+++|. |+ | +.|+|+++++++
T Consensus 14 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~~~~~---~~----P-----~~g~~~~~~~e~ 80 (246)
T 3hkm_A 14 LRPFSCTRNPL-DRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVV---WK----P-----MTGQIGKQEKEY 80 (246)
T ss_dssp CCCEEEEECCC-SSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEEEEE---EE----C-----SSSCCCTTHHHH
T ss_pred cCCeEEEECCC-CCCCeEEEEEECCeEEEEEEecCcCCCcccCCCccEEEEEE---eC----C-----CCCCCChhHHHH
Confidence 48999999999 7899999999999999999999764433 345566777774 22 2 358899999999
Q ss_pred HHHhcCccccccc-CCC-cCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEE-CCEEEEcCCHH
Q psy3754 155 SRLIDRPIRPLFP-EGY-LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI-DGKYILNPTTE 231 (755)
Q Consensus 155 sRlIdr~lrpl~p-~~~-~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~-~g~~vldPt~~ 231 (755)
+|+|+|+|||+++ .+| +|.++|+++||++||+.. .||+|||++||+++||||+++++||++|++ +|++++|||.+
T Consensus 81 ~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~--~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~llDpt~~ 158 (246)
T 3hkm_A 81 EMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLL--PCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKA 158 (246)
T ss_dssp HHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCEEESCCHH
T ss_pred HHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHH--HHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEEEECCCHH
Confidence 9999999999999 455 799999999999999865 999999999999999999999999999998 89999999999
Q ss_pred HHhcCcccEEEEeecCc------------------eEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy3754 232 QLKKSHLDLLVAGTEKA------------------IITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQ 291 (755)
Q Consensus 232 E~~~s~~~l~va~~~~~------------------i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~ 291 (755)
|+..+++|++|+++.++ ++|++.. +.+++++|.+|+++|++++++|+++|++.+++..+
T Consensus 159 Ee~~~~~~~~va~~~~~i~~lq~~g~~~~~~~~~~~i~~~~~-g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 235 (246)
T 3hkm_A 159 EEQQLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSITH-GVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAP 235 (246)
T ss_dssp HHTTCSEEEEEEEEC--------------------CCCEEEE-ECEEHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHhcCCeeEEEEEeCCceEEEeecccccccccccceeeeecc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999998753 4455544 46999999999999999999999999998876554
No 44
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.4e-34 Score=299.07 Aligned_cols=208 Identities=16% Similarity=0.182 Sum_probs=186.6
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCC-----CCCCcceeeEEeEeeccccCCCCCCcccccCCCCch
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPT-----STYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSER 150 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~-----~~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~ 150 (755)
-|++.+++|.+ ++|+|||++++|+|+|+|+|++|.+++ ...+..+|+++|....|+.+.. +|.|+|+++
T Consensus 26 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~~~~-----~~~~~~~~~ 99 (249)
T 2nn6_B 26 LRKIQARMGVF-AQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGER-----KRRPHGDRK 99 (249)
T ss_dssp CCCEEEEESCS-SSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSSC-----CCTTTSTHH
T ss_pred cCCeEEEeCCC-CCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCccccc-----ccCCCCCHh
Confidence 58999999999 899999999999999999999987763 2567789999999988887642 344789999
Q ss_pred hhHHHHHhcCcccccccC-CC-cCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcC
Q psy3754 151 ETIISRLIDRPIRPLFPE-GY-LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNP 228 (755)
Q Consensus 151 e~l~sRlIdr~lrpl~p~-~~-~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~~vldP 228 (755)
+++++|+|+|+|||.++. .| +|.++|+|+||++||+.. .||+|||++||++++|||+++++||++|+++|.+++||
T Consensus 100 ~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~--~A~i~aa~~AL~da~iPl~~~v~avs~g~~~~~~l~Dp 177 (249)
T 2nn6_B 100 SCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTY--AACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADL 177 (249)
T ss_dssp HHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHH--HHHHHHHHHHHHHTCCCCSSCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHH--HHHHHHHHHHHHhcCCcccCCeeeEEEEEECCeEEECC
Confidence 999999999999998873 34 467999999999999765 99999999999999999999999999999999999999
Q ss_pred CHHHHhcCcccEEEEe--ecCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy3754 229 TTEQLKKSHLDLLVAG--TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQK 292 (755)
Q Consensus 229 t~~E~~~s~~~l~va~--~~~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~ 292 (755)
|.+|+..++.+++|+. +.+++++++..|. ++.+++.+|++.|.+++++|++.|++.+.+..++
T Consensus 178 ~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~-~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 242 (249)
T 2nn6_B 178 SHVEEAAGGPQLALALLPASGQIALLEMDAR-LHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 242 (249)
T ss_dssp CHHHHTSSCCCEEEEEETTTTEEEEEEECSC-CBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHhccCCcEEEEEEECCCCCEEEEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999996 4456999999984 9999999999999999999999999999877543
No 45
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.9e-35 Score=312.57 Aligned_cols=204 Identities=19% Similarity=0.205 Sum_probs=179.8
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCC-C---CCCCCcceeeEEeEeeccccCCCCCCcccccCC-CCch
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKD-P---TSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGK-PSER 150 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~-~---~~~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~-p~~~ 150 (755)
-|++.+++|.+ .+|+|||++++|+|+|||+|+++.. | .++.+|++++|+|.++ |++ +| +|+ |+++
T Consensus 46 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~e~~~p~~~~~~~g~l~~~v~~~p~--a~~----~~---~~r~~~~~ 115 (305)
T 2nn6_E 46 YRCVEVETDVV-SNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSAS--ATP----EF---EGRGGDDL 115 (305)
T ss_dssp CCCCEEEECCC-TTSSSEEEEEETTEEEEEECCCCCSCCCSSSCSSCCEEEECCCCTT--TCS----SC---CTTSTHHH
T ss_pred ccCeEEEeCcc-cCCCcEEEEEECCeEEEEEEEEEeeCCCcCCCCceEEEEEEEeCCC--cCc----cc---cCCCCchH
Confidence 47899999999 5999999999999999999999654 3 4677999999999875 333 22 344 4589
Q ss_pred hhHHHHHhcCcccc----------cccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCC----------
Q psy3754 151 ETIISRLIDRPIRP----------LFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLG---------- 210 (755)
Q Consensus 151 e~l~sRlIdr~lrp----------l~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~---------- 210 (755)
+++++|+|+|+||| +||+.|+|.++|+++||++||+.. .||+|||++||++++||+..
T Consensus 116 ~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~--daai~aa~~AL~~a~iP~~~~~~~~~~~~~ 193 (305)
T 2nn6_E 116 GTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLF--DAISIAVKAALFNTRIPRVRVLEDEEGSKD 193 (305)
T ss_dssp HHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHH--HHHHHHHHHTTTTCCCCEEEEECC------
T ss_pred HHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHH--HHHHHHHHHHHHhcCCCeEEEecCCCCcee
Confidence 99999999999999 999999999999999999999544 67999999999999999643
Q ss_pred -----------------CeEEEEEEEECCEEEEcCCHHHHhcCcccEEEEeecCc-eEEEE-cCCCCCCHHHHHHHHHHH
Q psy3754 211 -----------------PLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVE-SESKQLPEDIILNAIIFG 271 (755)
Q Consensus 211 -----------------~vaav~vg~~~g~~vldPt~~E~~~s~~~l~va~~~~~-i~mie-~~~~~~se~~~~~al~~a 271 (755)
+++||++|+++|.+++|||.+|+..++++|+|++++++ |+|++ .++.++++++|.+|+++|
T Consensus 194 i~~~~d~~~~~~l~l~~~p~avt~g~i~~~~l~Dpt~~Ee~~~~~~l~Va~~~~g~i~~i~~~g~~~l~~~~l~~~l~~A 273 (305)
T 2nn6_E 194 IELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETG 273 (305)
T ss_dssp EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEECCCSSSCCCEEEEEESSCBCHHHHHHHHHHH
T ss_pred eeccCcccccccccccCceEEEEEEEECCEEEECCCHHHHhhcCCcEEEEEcCCCCEEEEEccCCCCCCHHHHHHHHHHH
Confidence 45699999999999999999999999999999999885 88888 455679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q psy3754 272 HEKMKIAINAINELVQNVGQ 291 (755)
Q Consensus 272 ~~~~~~i~~~~~~~~~~~~~ 291 (755)
++++++++++|++.+++...
T Consensus 274 ~~~~~~i~~~~~~~l~~~~~ 293 (305)
T 2nn6_E 274 KRVGKVLHASLQSVVHKEES 293 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987654
No 46
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=9.6e-37 Score=312.87 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=159.8
Q ss_pred CCCccceEEEeCCCCCCCceeEEEeCCeEEEEEEEecCCccccccccccCCcccEEEEEeecCCCCcccccCCCCCChhH
Q psy3754 385 VNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRRE 464 (755)
Q Consensus 385 ~~e~R~i~ie~g~l~~a~GSal~~~G~T~Vl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~f~p~s~~e~~~~g~~~~re 464 (755)
.+|+|||++++|+++++||||+|++|+|+|+|+|+ ||.+..+.. ...+++.++|+|+|++ |+++++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~-~~~e~~~~~-----~~~~~~~l~v~~~p~~-------G~~~~~- 67 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCS-GPGDVHASK-----ASDEAMTLDISYRANC-------GDNKFN- 67 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCC-SSCC------------------CCCSSCCC-------C--CCS-
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEE-CCCCCcccc-----cCCceEEEEEEEcCCC-------CCCCHH-
Confidence 58999999999999999999999999999999997 887543321 2345677899999985 334444
Q ss_pred HHHHHHHHHhccccCCCCCCCce-EEEEEEEEEccCCChhhHHHHHHHHHHHhCCCCcccceEEEEEEEEecCceEEEEe
Q psy3754 465 IGHGRLAKRALLPVLPNNNKFNY-SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543 (755)
Q Consensus 465 i~~~~lieral~~vi~~~~~~p~-tI~V~v~VLe~dGs~~~Aav~a~slAL~daGvPi~~~va~vs~gli~~~~~~~vL~ 543 (755)
+++++++|+|++++++ ++||+ +|+|+++||++||++++||+||+++||+|||+|++++|+|+++|++++ .+|+
T Consensus 68 -e~~~li~r~l~~~i~~-~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~~g----~~ll 141 (222)
T 3krn_A 68 -VLNNIIHSTLSNAINL-ELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKD----ELII 141 (222)
T ss_dssp -SCTTHHHHC--CCSCC------CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEECSS----SEES
T ss_pred -HHHHHHHHHHHHhccH-HhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEECC----EEEe
Confidence 7899999999999998 78996 599999999999999999999999999999999999999999999754 4789
Q ss_pred cCCccccccCCccEEEEe-----ecCcEEEEEeeecccccCHHHHHHHHHHHHhhhHHHHHHHHhhccccc
Q psy3754 544 DILGDEDRCGDMDFKVAG-----TVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCK 609 (755)
Q Consensus 544 Dp~~~Ee~~gd~~~~Va~-----t~~gi~alq~~~k~~~is~~~l~~al~~A~~~~~~I~~~~~~~l~~~r 609 (755)
||+..||+.++++++|++ +.++|+++|+++ .++.+++.+|++.|++++..|.+.|+++++...
T Consensus 142 Dpt~~Ee~~~~~~l~va~~~~~~~~~~i~~vq~~g---~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~ 209 (222)
T 3krn_A 142 DPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIG---HWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKL 209 (222)
T ss_dssp SCCTTTTTSCC-CCCCEECCCSSSSCCEEEECCBS---SCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhccCccEEEEEEccCCCCCCEEEEEEeC---CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998 456799999974 589999999999999999999999999998754
No 47
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.7e-33 Score=289.15 Aligned_cols=197 Identities=18% Similarity=0.150 Sum_probs=174.0
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCCC---CCCcceeeEEeEeeccccCCCCCCcccccCCCCchhh
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTS---TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERET 152 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~~---~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e~ 152 (755)
-|++.+++|.+ .+|+|||++++|+|+|+|+|++|.++++ ..+.++++++|.++ .|+|+++|+
T Consensus 30 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~~~~p~--------------~g~~~~~e~ 94 (237)
T 2nn6_D 30 LRHFACEQNLL-SRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPK--------------IGLPGVAEK 94 (237)
T ss_dssp CCCEEEEESCC-SSSSEEEEEEETTEEEEEEEEEEEECC------CCEEEEEEEECS--------------SSCCCHHHH
T ss_pred ccceEEEeCCC-CCCCEEEEEEECCcEEEEEEeCCCcccccccCCCcEEEEEEecCC--------------CCCCCccHH
Confidence 58999999999 7899999999999999999999887443 34667899998642 278999999
Q ss_pred HHHHHhcCccccccc-CCC-cCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEE-CCEEEEcCC
Q psy3754 153 IISRLIDRPIRPLFP-EGY-LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI-DGKYILNPT 229 (755)
Q Consensus 153 l~sRlIdr~lrpl~p-~~~-~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~-~g~~vldPt 229 (755)
+++|+|+|+|+|+++ .+| +|.++|+|+||++||+.. .||+|||++||++++|||+++++||++|++ +|.+++||+
T Consensus 95 ~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~--~aai~aa~~AL~da~iP~~~~v~avs~g~~~~~~~llDp~ 172 (237)
T 2nn6_D 95 SRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLL--ACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPT 172 (237)
T ss_dssp HHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHTTCCCSSCEEEEEEEECTTCCEEESCC
T ss_pred HHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHH--HHHHHHHHHHHHHcCCCcccCeeeEEEEEecCCcEEeCCC
Confidence 999999999999887 344 679999999999999865 899999999999999999999999999998 799999999
Q ss_pred HHHHhcCcccEEEEeec--CceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy3754 230 TEQLKKSHLDLLVAGTE--KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG 290 (755)
Q Consensus 230 ~~E~~~s~~~l~va~~~--~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~ 290 (755)
+.|++.++.+++|+.+. +++++++..| .+++++|.+|++.|.+++++|+++|++.+++.-
T Consensus 173 ~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g-~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 234 (237)
T 2nn6_D 173 SKQEKEARAVLTFALDSVERKLLMSSTKG-LYSDTELQQCLAAAQAASQHVFRFYRESLQRRY 234 (237)
T ss_dssp HHHHHHCSEEEEEEEETTTCCCCEEEEEE-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCceEEEEcCCCCCEEEEEEeC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999977777666554 4699999887 599999999999999999999999999988764
No 48
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.3e-33 Score=305.87 Aligned_cols=200 Identities=18% Similarity=0.185 Sum_probs=177.9
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCC-CC---CCCCcceeeEEeEeeccccCCCCCCccc-ccCCCCch
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKD-PT---STYNFFPLTVDYIEKAYAAGRIPGSFFK-REGKPSER 150 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~-~~---~~~~f~pl~v~y~e~~~a~g~ip~~~~k-Reg~p~~~ 150 (755)
-|++.+++| +|+|||++++|+|+|||+|+++.. |+ ++.++++++|+|.+. ++.+ |+|+|+++
T Consensus 49 ~R~i~ie~g----~A~GSa~v~~G~T~VL~tV~~e~~~p~~~~~~~g~l~~~v~~~p~---------a~~~~~~g~~s~~ 115 (358)
T 2nn6_A 49 YRNIRISFG----TDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQM---------AAPAFEPGRQSDL 115 (358)
T ss_dssp CCCCEEEEC----SSTTEEEEESSSCEEEEEECCEEECCCSTTTTSCCEEEEEEECTT---------TCSSCCSSSTHHH
T ss_pred cCCeEEEEe----cCCcEEEEEECCcEEEEEEEecccCCcccCCCCcEEEEEEEecCC---------ccccccCCCCCHH
Confidence 578999999 799999999999999999998653 32 567888888888543 2333 45899999
Q ss_pred hhHHHHHhcCcccc----------cccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCC-------------
Q psy3754 151 ETIISRLIDRPIRP----------LFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELP------------- 207 (755)
Q Consensus 151 e~l~sRlIdr~lrp----------l~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP------------- 207 (755)
+++++|+|+|+||| ++|+.++|.++|+|+||++||+.. .||++||++||++++||
T Consensus 116 e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~--dAai~Aa~aAL~da~iP~v~~~~~~v~i~~ 193 (358)
T 2nn6_A 116 LVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNII--DAASIAAIVALCHFRRPDVSVQGDEVTLYT 193 (358)
T ss_dssp HTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCH--HHHHHHHHHHHHHCCCCCCBCCTTCCBCCH
T ss_pred HHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHH--HHHHHHHHHHHHHhCcCcEEeeCCeeEecc
Confidence 99999999999999 488999999999999999999765 69999999999999999
Q ss_pred ----------CCCCeEEEEEEEE--CCEEEEcCCHHHHhcCcccEEEEeecCc-eEEEEc-CCCCCCHHHHHHHHHHHHH
Q psy3754 208 ----------FLGPLGVAKVGYI--DGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVES-ESKQLPEDIILNAIIFGHE 273 (755)
Q Consensus 208 ----------~~~~vaav~vg~~--~g~~vldPt~~E~~~s~~~l~va~~~~~-i~mie~-~~~~~se~~~~~al~~a~~ 273 (755)
|.++++||++|+. ++.+++|||.+|+..++++|+|+++.++ |++++. ++.++++++|.+|+++|++
T Consensus 194 ~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va~t~~g~I~~lqk~G~~~ls~~~l~~~l~~A~~ 273 (358)
T 2nn6_A 194 PEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGV 273 (358)
T ss_dssp HHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEEETTTEEEEEEEESCCCCCHHHHHHHHHHHHH
T ss_pred cccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEEEcCCCeEEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999976 8899999999999999999999999986 888884 4556999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q psy3754 274 KMKIAINAINELVQNVG 290 (755)
Q Consensus 274 ~~~~i~~~~~~~~~~~~ 290 (755)
++++|+++|++.+++..
T Consensus 274 ~~~~i~~~~~~~l~~~~ 290 (358)
T 2nn6_A 274 KVAEITELILKALENDQ 290 (358)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 99999999999987644
No 49
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=7.3e-33 Score=287.52 Aligned_cols=205 Identities=18% Similarity=0.218 Sum_probs=181.4
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCCCC----CCCCcceeeEEeEeeccccCCCCCCcccccCCCCchh
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPT----STYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERE 151 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~~~----~~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e 151 (755)
-|++.+++|.+ ++|+|||++++|+|+|+|+|++|.+.. ...+..+|+++|....|+.+.. +.|+|++++
T Consensus 26 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~~~------~~~~~~~~~ 98 (240)
T 2wnr_B 26 LRPLKIEAGIL-ERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEER------KRPGPDRRS 98 (240)
T ss_dssp CCCEEEEESCC-SSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSSSC------CCSSCCHHH
T ss_pred ccCeEEEeCCC-CCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcCCc------cCCCCChhH
Confidence 48999999999 799999999999999999999976543 2456788999999888877643 247899999
Q ss_pred hHHHHHhcCcccccccCCC--cCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECCEEEEcCC
Q psy3754 152 TIISRLIDRPIRPLFPEGY--LNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPT 229 (755)
Q Consensus 152 ~l~sRlIdr~lrpl~p~~~--~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g~~vldPt 229 (755)
++++|+|+|+|||.++... +|.++|+++||++||+.. .||+|||++||++++|||+++++||++|++++.+++|||
T Consensus 99 ~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~--~a~i~aa~~AL~da~iP~~~~v~avs~g~~~~~~l~Dp~ 176 (240)
T 2wnr_B 99 VEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTR--CAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLS 176 (240)
T ss_dssp HHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHH--HHHHHHHHHHHHHTTCCBSSCCEEEEEEESSSSEEESCC
T ss_pred HHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHH--HHHHHHHHHHHHHcCCccccceeeEEEEEECCEEEeCCC
Confidence 9999999999999776333 357999999999999865 999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccEEEEe--ecCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy3754 230 TEQLKKSHLDLLVAG--TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG 290 (755)
Q Consensus 230 ~~E~~~s~~~l~va~--~~~~i~mie~~~~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~ 290 (755)
.+|+..++.+++|+. +.+++++++..|+ ++.+++.+|++.|.++++++.+.+++.+++..
T Consensus 177 ~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~-~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 238 (240)
T 2wnr_B 177 EEEDKEGQADVPVAILPRTREITLLQSDGN-LTPEEFERALDLAVEGCLRIHEVQKEALRKRY 238 (240)
T ss_dssp SHHHHSCSEEEEEEEETTTTEEEEEEEEEC-BCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhccCCceEEEEEECCCCCEEEEEEEcc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999995 4556999999986 99999999999999999999999999987653
No 50
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=317.93 Aligned_cols=238 Identities=20% Similarity=0.238 Sum_probs=203.3
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCC-CCC----------CCCcceeeEEeEeeccccCCCCCCccccc
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKD-PTS----------TYNFFPLTVDYIEKAYAAGRIPGSFFKRE 144 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~-~~~----------~~~f~pl~v~y~e~~~a~g~ip~~~~kRe 144 (755)
=|++.+++|.+ ++|+|||++++|+|+|||+|+++.. +.. +.+..+++++|....||.+.. +|-
T Consensus 328 lRpi~i~~g~l-~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st~e~-----~~~ 401 (630)
T 3u1k_A 328 LRNVSCEVDMF-KTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEI-----GKV 401 (630)
T ss_dssp CCCEEEEECCS-TTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGGTCC-----CCC
T ss_pred ccceEEEECCC-CCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCCccccc-----ccC
Confidence 37899999999 8999999999999999999998532 221 234457899999998888643 334
Q ss_pred CCCCchhhHHHHHhcCcccccccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEEC---
Q psy3754 145 GKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYID--- 221 (755)
Q Consensus 145 g~p~~~e~l~sRlIdr~lrpl~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~--- 221 (755)
|+|+.+|+.++|+++|+|||++|..|.|.++|+|+||++||+.. .||+|||++||++|||||+++|+||++|+++
T Consensus 402 g~~~rREi~~~~Li~raLr~vi~~~~p~tI~V~~~VLesDGs~~--~AsI~aa~lAL~dAGIPl~~~Vaavs~gli~~~~ 479 (630)
T 3u1k_A 402 TGLNRRELGHGALAEKALYPVIPRDFPFTIRVTSEVLESNGSSS--MASACGGSLALMDSGVPISSAVAGVAIGLVTKTD 479 (630)
T ss_dssp SSCCHHHHHHHHHHHHHHGGGSCTTCSSEEEEEEEEEECSSCHH--HHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEC
T ss_pred CCCChHHHHHHHHHHHHHHhhCcccCCeEEEEEEEEEEcCCCHH--HHHHHHHHHHHHhCCCCcccceEEEEEEEecCCC
Confidence 88999999999999999999999999999999999999999766 9999999999999999999999999999886
Q ss_pred ---C-----EEEEcCCHHHHhcCcccEEEEeecCceEEEEcCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy3754 222 ---G-----KYILNPTTEQLKKSHLDLLVAGTEKAIITVESESK--QLPEDIILNAIIFGHEKMKIAINAINELVQNVGQ 291 (755)
Q Consensus 222 ---g-----~~vldPt~~E~~~s~~~l~va~~~~~i~mie~~~~--~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~ 291 (755)
| .+++||+..|+..+++|+.|++|.+++++++++++ .++.++|.+||+.|.++|+.|++.|++.+.+...
T Consensus 480 ~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~t~~gIt~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I~~~m~~al~~~~~ 559 (630)
T 3u1k_A 480 PEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPRA 559 (630)
T ss_dssp SSSSCEEEEEEEESCCHHHHHTSSEEEEEEECSSCEEEEEEEECSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred cccccccCceEEecCCHHHHhhCcceEEEEecCCceEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 69999999999999999999999999999998775 6999999999999999999999999999988877
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHHHHHHHhccchhH
Q psy3754 292 KKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQI 328 (755)
Q Consensus 292 ~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~ 328 (755)
+..++.|....-.+- .++|.+++...+|.-
T Consensus 560 ~~~~~ap~~~~~~I~-------~~kI~~vIG~gG~~I 589 (630)
T 3u1k_A 560 SRKENGPVVETVQVP-------LSKRAKFVGPGGYNL 589 (630)
T ss_dssp SCCTTCCEEEEEECC-------HHHHHHHHCGGGHHH
T ss_pred hhcccCCeEEEEEeC-------hhHhheeECCCChhH
Confidence 666666543111111 366666776666543
No 51
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=4.8e-32 Score=287.20 Aligned_cols=206 Identities=23% Similarity=0.247 Sum_probs=184.5
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEE-ecCCCCC-CCCcceeeEEeEeeccccCCCCCCcccccCCCCchhhH
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVV-SCKDPTS-TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETI 153 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~-~~~~~~~-~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~~~e~l 153 (755)
-|++.+++|.+ ++|+|||++++|+|+|+|+|+ ++.+|.. +.+..+++++|....||.+.+ +.|+|++++++
T Consensus 36 ~R~i~i~~g~l-~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~~~~~~~p~a~~~~------~~g~~~~~~~~ 108 (277)
T 2po1_B 36 YRPIEIEVGVI-EKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTF------EPGPPDERAIE 108 (277)
T ss_dssp CCCEEEEECCS-TTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTSCEEEEEEEECGGGCTTC------CSSSCCHHHHH
T ss_pred cCCeEEEeCCc-CCCCeEEEEEECCeEEEEEEEecccCCCCCCCCceEEEEEEEeCCCccccc------cCCCCChHHHH
Confidence 58999999999 789999999999999999999 5555532 335568999998888877542 34789999999
Q ss_pred HHHHhcCcccc----------cccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCC------------------
Q psy3754 154 ISRLIDRPIRP----------LFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISE------------------ 205 (755)
Q Consensus 154 ~sRlIdr~lrp----------l~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~------------------ 205 (755)
++|+|+|+||+ ++|+.++|.++|+|+||++||+.. .||+|||++||++++
T Consensus 109 l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~--~a~i~aa~~AL~da~~p~~~~~~~~~~~~~~~~ 186 (277)
T 2po1_B 109 LARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLM--DAIGIAAIAALLNARVPKVRYNEETGEVETLDE 186 (277)
T ss_dssp HHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHCEEEEEEECTTTCCEEEEEE
T ss_pred HHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHH--HHHHHHHHHHHHhcCCCcEEEeCCCceeecccc
Confidence 99999999998 468888999999999999999765 999999999999999
Q ss_pred ---CCCCCCeEEEEEEEECCEEEEcCCHHHHhcCcccEEEEeecCc-eEEEEcCC-CCCCHHHHHHHHHHHHHHHHHHHH
Q psy3754 206 ---LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVESES-KQLPEDIILNAIIFGHEKMKIAIN 280 (755)
Q Consensus 206 ---IP~~~~vaav~vg~~~g~~vldPt~~E~~~s~~~l~va~~~~~-i~mie~~~-~~~se~~~~~al~~a~~~~~~i~~ 280 (755)
+||+++++||++|++++.+++|||.+|+..++.+++|+++.++ +++++..| ..++.++|.+|++.|.++++++++
T Consensus 187 ~~~ipl~~~~~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~g~i~~lq~~g~~~~~~~~l~~~l~~A~~~~~~l~~ 266 (277)
T 2po1_B 187 TEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRK 266 (277)
T ss_dssp EEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEECTTSCEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCceEEEEEEEECCEEEeCCCHHHHhhCCCcEEEEEcCCCCEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999887 88888764 579999999999999999999999
Q ss_pred HHHHHHHHhC
Q psy3754 281 AINELVQNVG 290 (755)
Q Consensus 281 ~~~~~~~~~~ 290 (755)
+|++.+++..
T Consensus 267 ~~~~~l~~~~ 276 (277)
T 2po1_B 267 LILEAVEKAK 276 (277)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHhhcc
Confidence 9999988653
No 52
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.4e-32 Score=295.13 Aligned_cols=203 Identities=16% Similarity=0.165 Sum_probs=161.1
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEEEecCC-C---CCCCCcceeeEEeEeeccccCCCCCCcccccCCCC-ch
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKD-P---TSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPS-ER 150 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv~~~~~-~---~~~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~-~~ 150 (755)
-|++.+++| +|+|||++++|+|+|||+|+++.. | .++.++++++|+|.+..++.+ |.|+|+ ++
T Consensus 33 ~R~i~i~~g----~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~~~~~ve~~~~~~~~~--------~~g~~~~~~ 100 (305)
T 2wp8_A 33 FRDVEITFG----KEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQF--------ENGNITGED 100 (305)
T ss_dssp CCCEEEEEC----SSTTEEEEEETTEEEEEEEEEEEC-CCSSCTTCCEEEEEECCC------------------------
T ss_pred cCCeEEEEc----CCCcEEEEEECCeEEEEEEeccccCCcccCCCCcEEEEEEEECCCCCccc--------cCCCCChhH
Confidence 589999999 799999999999999999998642 3 456789999999988765432 348999 99
Q ss_pred hhHHHHHhcCcccc----------cccCCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCC-------------
Q psy3754 151 ETIISRLIDRPIRP----------LFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELP------------- 207 (755)
Q Consensus 151 e~l~sRlIdr~lrp----------l~p~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP------------- 207 (755)
+++++|+|+|+||| ++|+.|.|.++|+|+||++||+.. .||++||++||+++++|
T Consensus 101 ~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~--dAai~aa~~AL~~a~iP~~~~~~~~~~i~~ 178 (305)
T 2wp8_A 101 EVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFI--DASCIAVMAGLMHFKKPDITVHGEQIIVHP 178 (305)
T ss_dssp ------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHCEECCCBCTTSSCCBCC
T ss_pred HHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHH--HHHHHHHHHHHHHhCCCeEEecCCceEecc
Confidence 99999999999995 478899999999999999999854 79999999999999999
Q ss_pred ----------CCCCeEEEEEEEEC--------------CEEEEcCCHHHHhcCcccEEEEeecCc-eEEEE-cCCCCCCH
Q psy3754 208 ----------FLGPLGVAKVGYID--------------GKYILNPTTEQLKKSHLDLLVAGTEKA-IITVE-SESKQLPE 261 (755)
Q Consensus 208 ----------~~~~vaav~vg~~~--------------g~~vldPt~~E~~~s~~~l~va~~~~~-i~mie-~~~~~~se 261 (755)
|.+.++||++|+++ +.+++|||.+|+..++++|+|++++++ ++.++ .++..+++
T Consensus 179 ~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va~~~~g~i~~l~~~g~~~~~~ 258 (305)
T 2wp8_A 179 VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDA 258 (305)
T ss_dssp SSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEEECTTSEEEEEEEEEEEEECH
T ss_pred cccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEEEEcCCCcEEEEEecCCCCCCH
Confidence 55567799999997 789999999999999999999999887 55554 45557999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy3754 262 DIILNAIIFGHEKMKIAINAINELVQNVGQK 292 (755)
Q Consensus 262 ~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~ 292 (755)
++|.+|+++|++++++|+++|++.+++.++.
T Consensus 259 ~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 289 (305)
T 2wp8_A 259 LTLMKCCHEAYSIIEKITDQILQLLKEDSEK 289 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877643
No 53
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.97 E-value=4.4e-31 Score=307.59 Aligned_cols=239 Identities=21% Similarity=0.302 Sum_probs=188.5
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEE-EecCCCCCC------CCcceeeEEeEeeccccCCCCCCcccccCCCC
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATV-VSCKDPTST------YNFFPLTVDYIEKAYAAGRIPGSFFKREGKPS 148 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv-~~~~~~~~~------~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~ 148 (755)
=|++.+++|.+ ++|+|||++++|+|+|||+| ++|.++.+. .+..+++++|.-..||.+.. +|.|+|+
T Consensus 340 lRpI~ie~gvl-~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st~er-----~~~g~~~ 413 (726)
T 4aid_A 340 VRPILGEVGIL-PRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSVGET-----GRMGSPG 413 (726)
T ss_dssp CCCEEEEECSS-TTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGGTCC-----CCCSSCC
T ss_pred ccceEEEECCC-CCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCccccc-----ccCCCcc
Confidence 37899999999 89999999999999999999 687765432 23456899998888887643 3347899
Q ss_pred chhhHHHHHhcCccccccc--CCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECC----
Q psy3754 149 ERETIISRLIDRPIRPLFP--EGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDG---- 222 (755)
Q Consensus 149 ~~e~l~sRlIdr~lrpl~p--~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g---- 222 (755)
.+|++++|+++|+|||++| ..|.|.++|+|+||++||+.. +||+|||++||++|||||.++|+||++|++++
T Consensus 414 ~Reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~--~AsI~aa~lAL~DAGIPm~~~VaavsvGli~~g~~~ 491 (726)
T 4aid_A 414 RREIGHGKLAWRALRPMLPTKEDFPYTIRLVSEITESNGSSS--MATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGF 491 (726)
T ss_dssp HHHHHHHHHHHHHHGGGSCCTTTCCCEEEEEEEEEECSSCHH--HHHHHHHHHHHHHTTCCCSSCCEEEEEEEEECSSCE
T ss_pred hhhHHHHHHHHHHHHHhcCccccCCeEEEEEEEEEEcCCcHH--HHHHHHHHHHHHhcCCccccCeeEEEEEEEcCCCce
Confidence 9999999999999999999 578899999999999999876 99999999999999999999999999999853
Q ss_pred EEEEcCCHHHHhcCcccEEEEeecCceEEEEcCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC
Q psy3754 223 KYILNPTTEQLKKSHLDLLVAGTEKAIITVESESK--QLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIV 300 (755)
Q Consensus 223 ~~vldPt~~E~~~s~~~l~va~~~~~i~mie~~~~--~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~k~~~~~~~ 300 (755)
.+++||+..|+..+++|+.|+++.++++.++++++ .|+.++|.+||+.|.++|..|++.|++.+.+...+..++.|..
T Consensus 492 ~iLlD~~~~Ed~~gd~d~~Va~t~~gIt~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~ 571 (726)
T 4aid_A 492 AVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKI 571 (726)
T ss_dssp EEEESCCTTGGGGSSEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC-
T ss_pred EEEecCChhHHhcCCceEEEEecCCceEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeE
Confidence 47789999999999999999999999999998773 5899999999999999999999999998876655545555432
Q ss_pred CChhHHHHHHHHHHHHHHHHHhccchhHH
Q psy3754 301 KDKTLISKIINISEHKIRKAYQIKNKQIR 329 (755)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~~~~k~~r 329 (755)
..-. .-.++|.+++...+|.-|
T Consensus 572 ~~~~-------i~~~ki~~vig~gg~~i~ 593 (726)
T 4aid_A 572 ETIN-------IPTDKIREVIGSGGKVIR 593 (726)
T ss_dssp -----------------------------
T ss_pred EEEe-------CCHHHHHhhcCCCchhHH
Confidence 1111 124566666665555543
No 54
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.97 E-value=8.2e-31 Score=297.00 Aligned_cols=205 Identities=17% Similarity=0.254 Sum_probs=177.3
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEE-EecCCCCC------CCCcceeeEEeEeeccccCCCCCCcccccCCCC
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATV-VSCKDPTS------TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPS 148 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv-~~~~~~~~------~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~ 148 (755)
=||+.+++|.+ ++|+|||++++|+|+|||+| ++|.++.. +.+..+++++|.-..||.+.. +|-|+|+
T Consensus 324 lRpi~i~~g~l-~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e~-----~~~g~~~ 397 (549)
T 3gme_A 324 IRGLDVRTGVL-PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGET-----GMVGSPK 397 (549)
T ss_dssp CCCEEEEECCC-SSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTCC-----CCSSCCC
T ss_pred ccceEEEECCC-CCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCCc-----ccCCCCC
Confidence 47999999999 89999999999999999999 58755432 224456899998888887643 3347899
Q ss_pred chhhHHHHHhcCccccccc--CCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEECC----
Q psy3754 149 ERETIISRLIDRPIRPLFP--EGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDG---- 222 (755)
Q Consensus 149 ~~e~l~sRlIdr~lrpl~p--~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~g---- 222 (755)
.+|++++|+|+|+|||.+| ..|.|.++|+|+||++||+.. .||||||++||+++||||+++|+||++|++++
T Consensus 398 ~Reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~--~AsI~aa~lAL~DAGvPm~~~Vaavs~Gli~~g~~~ 475 (549)
T 3gme_A 398 RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY 475 (549)
T ss_dssp SSHHHHHHHHHHHHTTTCCCTTTCCCEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHTCCCSSCCEEEEEEEEEETTEE
T ss_pred hhHHHHHHHHHHHHHHhcCccccCCeEEEEEEEEEECCCCHH--HHHHHHHHHHHHhCCCCcccceeEEEEEEEcCCCce
Confidence 9999999999999999999 577889999999999999877 99999999999999999999999999999865
Q ss_pred EEEEcCCHHHHhcCcccEEEEeecCceEEEEcCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3754 223 KYILNPTTEQLKKSHLDLLVAGTEKAIITVESESK--QLPEDIILNAIIFGHEKMKIAINAINELVQN 288 (755)
Q Consensus 223 ~~vldPt~~E~~~s~~~l~va~~~~~i~mie~~~~--~~se~~~~~al~~a~~~~~~i~~~~~~~~~~ 288 (755)
.+++||+..|+..+++|+.|++|.++++.++.+++ .|+.++|.+||+.|.++|..|++.|++.+.+
T Consensus 476 ~iL~D~~~~Ed~~~d~d~~Va~t~~gitalqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~ 543 (549)
T 3gme_A 476 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 (549)
T ss_dssp EEEESCCHHHHHHSSEEEEEEECSSCEEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred EEEecCChHHHccCCceEEEEecCCCeEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999888776543 3899999999999999999999999987654
No 55
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.97 E-value=7.7e-30 Score=299.61 Aligned_cols=215 Identities=20% Similarity=0.288 Sum_probs=188.7
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEE-EecCCCCCCC------CcceeeEEeEeeccccCCCCCCcccccCCCC
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATV-VSCKDPTSTY------NFFPLTVDYIEKAYAAGRIPGSFFKREGKPS 148 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv-~~~~~~~~~~------~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~ 148 (755)
=|++.+++|.+ ++|+|||++++|+|+|||+| ++|.++.+.. +...++++|.-..||.+.. +|-|+|+
T Consensus 365 lRpI~ie~gvl-~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~st~e~-----~~~g~~~ 438 (757)
T 1e3p_A 365 IRTLAAEVEAI-PRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGET-----GRVGSPK 438 (757)
T ss_dssp CCCEEEEECCS-SSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGGGTCC-----CCCSSCC
T ss_pred ccceeEEeCCC-CCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcccccc-----cCCCCCc
Confidence 37999999999 89999999999999999999 5887654322 3345889998888887643 3447899
Q ss_pred chhhHHHHHhcCccccccc--CCCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEE----CC
Q psy3754 149 ERETIISRLIDRPIRPLFP--EGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI----DG 222 (755)
Q Consensus 149 ~~e~l~sRlIdr~lrpl~p--~~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~----~g 222 (755)
.+|++++|+++|+|||.+| ..|.|.++|+|+||++||+.. .||+|||++||+++||||..+|+||++|++ ||
T Consensus 439 ~reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~--~Asi~aa~lAL~dAgIP~k~~Vaavs~gli~eg~dg 516 (757)
T 1e3p_A 439 RREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTS--MGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEING 516 (757)
T ss_dssp HHHHHHHHHHHHHHGGGCCCTTTSCEEEEEEEEEEECSSCHH--HHHHHHHHHHHHHHTCCCSSCCEEEEEEEEEEESSS
T ss_pred hhHHHHHHHHHHHHHHhccccccCCEEEEEEEEEEECCCCHH--HHHHHHHHHHHHHcCCCcccceEEEEEEEEecCCCC
Confidence 9999999999999999998 478899999999999999876 999999999999999999999999999998 55
Q ss_pred ----EEEEcCCHHHHhcCcccEEEEeecCceEEEEcCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Q psy3754 223 ----KYILNPTTEQLKKSHLDLLVAGTEKAIITVESESK--QLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNW 296 (755)
Q Consensus 223 ----~~vldPt~~E~~~s~~~l~va~~~~~i~mie~~~~--~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~k~~~ 296 (755)
.+++||+..|+..+++|+.|+++.++++.+++.++ .++.++|.+||+.|.++++.|.+.|++.+.+. .+..++
T Consensus 517 ~~~~~iLlDp~~~Ed~~gd~d~~Va~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ 595 (757)
T 1e3p_A 517 ETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEAIDTP-DEMSPN 595 (757)
T ss_dssp CEEEEEEESCCHHHHHHCSEEEEEEECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSC-CCCCTT
T ss_pred ccceeEEeCCCHHHHhccCceEEEEecCCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccc
Confidence 78999999999999999999999999999997764 37999999999999999999999999998877 544455
Q ss_pred CCC
Q psy3754 297 DPI 299 (755)
Q Consensus 297 ~~~ 299 (755)
.|.
T Consensus 596 ap~ 598 (757)
T 1e3p_A 596 APR 598 (757)
T ss_dssp SCB
T ss_pred Cce
Confidence 543
No 56
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.96 E-value=5e-29 Score=291.85 Aligned_cols=215 Identities=17% Similarity=0.263 Sum_probs=175.2
Q ss_pred CeeEEEEeCccCcCCCcEEEEEECCeEEEEEE-EecCCCCC------CCCcceeeEEeEeeccccCCCCCCcccccCCCC
Q psy3754 76 SYKISIEIGEIARQATSSVLVSIEDTVILATV-VSCKDPTS------TYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPS 148 (755)
Q Consensus 76 ~r~i~~e~G~la~~A~GSa~v~~G~T~Vl~tv-~~~~~~~~------~~~f~pl~v~y~e~~~a~g~ip~~~~kReg~p~ 148 (755)
=|++.+++|.+ ++|+|||++++|+|+|||+| +++.+.++ +.+...++++|.-..|+.+.. +|-|.|+
T Consensus 330 lRpI~ie~gvl-~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~st~e~-----~r~g~p~ 403 (723)
T 3cdi_A 330 IRGLDVRTGVL-PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGET-----GMVGSPK 403 (723)
T ss_dssp CCCEEEEESCS-TTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCC-----CCC----
T ss_pred cccceEEeCCC-CCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCCcccc-----ccCCCCC
Confidence 47999999999 89999999999999999999 57755322 234456889998888887644 4568899
Q ss_pred chhhHHHHHhcCcccccccC--CCcCeEEEEEEEEecCCCCChhhHHHHHHHHHhhcCCCCCCCCeEEEEEEEEC-CE--
Q psy3754 149 ERETIISRLIDRPIRPLFPE--GYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYID-GK-- 223 (755)
Q Consensus 149 ~~e~l~sRlIdr~lrpl~p~--~~~~~~qi~~~Vls~Dg~~~~~~~ai~aAs~AL~~s~IP~~~~vaav~vg~~~-g~-- 223 (755)
.+|+..+++++|+|||.+|. .|.|.++|+|+||++||+.. .||+|||++||++++||+..+|+||++|+++ |+
T Consensus 404 ~REi~~~~li~raL~~vI~~~~~~p~tI~Vd~~VLesdGs~~--~Asi~aa~lAL~dAgVPl~~~vaavs~gli~~g~~~ 481 (723)
T 3cdi_A 404 RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSS--MASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY 481 (723)
T ss_dssp -CTTHHHHHHHHHHHTTSCCSSSSCSCEEEEEEEEECSSCHH--HHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCEEEEEEEEEEeCCCCHH--HHHHHHHHHHHhcCCCCcccceeeEEEEEEcCCCce
Confidence 99999999999999999984 78899999999999999876 9999999999999999999999999999985 54
Q ss_pred -EEEcCCHHHHhcCcccEEEEeecCceEEEEcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Q psy3754 224 -YILNPTTEQLKKSHLDLLVAGTEKAIITVESES--KQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298 (755)
Q Consensus 224 -~vldPt~~E~~~s~~~l~va~~~~~i~mie~~~--~~~se~~~~~al~~a~~~~~~i~~~~~~~~~~~~~~k~~~~~ 298 (755)
+++||+..|+..+++|+.|+++.++++.+++.+ ..++.++|.+||+.|.++++.|.+.|++.+.+...+..++.|
T Consensus 482 ~iL~Dp~~~Ed~~~d~d~~Va~t~~gI~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap 559 (723)
T 3cdi_A 482 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAP 559 (723)
T ss_dssp EEESSCCGGGGGGCSEEEEEEECSSCEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCChHHhhhccceeeecccCCceEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccccCc
Confidence 999999999999999999999999999999864 359999999999999999999999999998776655444444
No 57
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=99.88 E-value=1.8e-23 Score=180.51 Aligned_cols=63 Identities=56% Similarity=0.752 Sum_probs=61.7
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCchhhHHHHHHHHHHHHHHHhhccCcccchhhhhhhhhcc
Q psy3754 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMKGNF 63 (755)
Q Consensus 1 m~~~~~~k~~~~~~~~~~~~d~gs~evqia~lt~~I~~l~~h~~~~~kd~~~~~~l~~~v~~r 63 (755)
|+++.++|++||++|+++++||||||||||+||+||++|++||+.||||+||+|||++||+||
T Consensus 1 m~l~~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kR 63 (89)
T 2vqe_O 1 MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQR 63 (89)
T ss_dssp -CCCHHHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999
No 58
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=99.87 E-value=4.6e-23 Score=179.13 Aligned_cols=63 Identities=44% Similarity=0.608 Sum_probs=60.8
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCchhhHHHHHHHHHHHHHHHhhccCcccchhhhhhhhhcc
Q psy3754 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMKGNF 63 (755)
Q Consensus 1 m~~~~~~k~~~~~~~~~~~~d~gs~evqia~lt~~I~~l~~h~~~~~kd~~~~~~l~~~v~~r 63 (755)
|+++.++|++||++|+++++||||||||||+||+||++|++||+.||||+||+|||++||++|
T Consensus 4 m~l~~~~K~~ii~~~~~~~~DTGS~EVQIA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kR 66 (93)
T 3ulw_A 4 MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQR 66 (93)
T ss_dssp --CCHHHHHHHHHHHCSSTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CccCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999
No 59
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=99.86 E-value=1.1e-22 Score=174.86 Aligned_cols=62 Identities=52% Similarity=0.706 Sum_probs=60.9
Q ss_pred CCChhHHHHHHHHhcCCCCCCCCchhhHHHHHHHHHHHHHHHhhccCcccchhhhhhhhhcc
Q psy3754 2 TIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMKGNF 63 (755)
Q Consensus 2 ~~~~~~k~~~~~~~~~~~~d~gs~evqia~lt~~I~~l~~h~~~~~kd~~~~~~l~~~v~~r 63 (755)
+++.++|++||++|+++++||||||||||+||+||++|++||+.||||+||+|||++||+||
T Consensus 1 ~l~~~~K~~ii~~~~~~~~DtGS~EvQiA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kR 62 (88)
T 3r8n_O 1 SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQR 62 (88)
T ss_dssp CCCHHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcccchhhHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999
No 60
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=99.86 E-value=1.5e-22 Score=174.35 Aligned_cols=62 Identities=52% Similarity=0.768 Sum_probs=60.3
Q ss_pred CCChhHHHHHHHHhcCCCCCCCCchhhHHHHHHHHHHHHHHHhhccCcccchhhhhhhhhcc
Q psy3754 2 TIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMKGNF 63 (755)
Q Consensus 2 ~~~~~~k~~~~~~~~~~~~d~gs~evqia~lt~~I~~l~~h~~~~~kd~~~~~~l~~~v~~r 63 (755)
+++.++|++||++|+++++||||||||||+||+||++|++||+.||||+||+|||++||+||
T Consensus 1 ~l~~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kR 62 (88)
T 1a32_A 1 ALTQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKR 62 (88)
T ss_dssp -CCHHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999
No 61
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=99.86 E-value=1.6e-22 Score=173.96 Aligned_cols=62 Identities=52% Similarity=0.706 Sum_probs=53.1
Q ss_pred CCChhHHHHHHHHhcCCCCCCCCchhhHHHHHHHHHHHHHHHhhccCcccchhhhhhhhhcc
Q psy3754 2 TIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMKGNF 63 (755)
Q Consensus 2 ~~~~~~k~~~~~~~~~~~~d~gs~evqia~lt~~I~~l~~h~~~~~kd~~~~~~l~~~v~~r 63 (755)
+++.++|++||++|+++++||||||||||+||+||++|++||+.||||+||+|||++||+||
T Consensus 1 ~l~~~~K~~ii~~~~~~~~DTGS~EvQiA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kR 62 (88)
T 4a5u_B 1 SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQR 62 (88)
T ss_dssp CCCHHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999
No 62
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.73 E-value=6.6e-19 Score=151.55 Aligned_cols=56 Identities=38% Similarity=0.485 Sum_probs=50.8
Q ss_pred HHHHHHHh--cCCCCCCCCchhhHHHHHHHHHHHHHHHhhccCcccchhhhhhhhhcc
Q psy3754 8 KASIILDN--SRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMKGNF 63 (755)
Q Consensus 8 k~~~~~~~--~~~~~d~gs~evqia~lt~~I~~l~~h~~~~~kd~~~~~~l~~~v~~r 63 (755)
|+..|.-+ .++++||||||||||+||+||++|++||+.||||+||+|||++||+||
T Consensus 3 k~~~i~~~s~~r~~~DTGS~EVQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kR 60 (90)
T 3bbn_O 3 KNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKR 60 (90)
T ss_dssp HHHHHHHHHHSCCSSSSCSTTHHHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHH
Confidence 34455534 679999999999999999999999999999999999999999999999
No 63
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.72 E-value=3.8e-19 Score=174.90 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=107.7
Q ss_pred HHHHHhhccccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeec--C--ceeEEEEecChhhhHHHH
Q psy3754 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN--D--EGIITIASFNSVSGQEAK 673 (755)
Q Consensus 598 ~~~~~~~l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~--~--~G~v~i~~~~~~~~~~a~ 673 (755)
+..|++++..++.++++++|++.+.++++++++++||++|++| +.+|++ + +|.+. ..+. ...++
T Consensus 4 l~~m~~~i~~pp~~l~~~~p~~i~~~i~~~~i~~vig~~G~~I--------~~~di~~~di~~g~i~--~~d~--~~~~~ 71 (171)
T 1y14_B 4 IKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYIL--------CVLDYDNIDIQRGRIL--PTDG--SAEFN 71 (171)
T ss_dssp EEEEEEECCCCTTSCSTTHHHHHHHHHHHHHTTEEETTTEEEE--------EECCGGGCBCC----------------CE
T ss_pred EEEEEEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEE--------EEEEecccccCccEEe--CCCC--CEEEE
Confidence 3456788888999999999999999999999999999999988 356777 6 45555 2221 22223
Q ss_pred HHHHHhhhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCc----------ccccCCCCEEEEEEEEE
Q psy3754 674 RRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII----------TDFLKENQKVRVKVLGI 743 (755)
Q Consensus 674 ~~i~~~~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~----------~~~~kvGd~V~VkV~~i 743 (755)
..++.+..++++|++|+|+|+++++||+||+|.+ .+||||+|+|++.+.-++ +++|++||.|+|||+++
T Consensus 72 ~~~~~~~~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 150 (171)
T 1y14_B 72 VKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150 (171)
T ss_dssp EEEEEEEECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEE
T ss_pred EEEEEEEccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEE
Confidence 3345556788999999999999999999999988 999999999986533111 27799999999999999
Q ss_pred cC-C---CcEEEEEe
Q psy3754 744 DD-R---GRIKLSMI 754 (755)
Q Consensus 744 d~-~---gki~LS~k 754 (755)
|. . .+|. ||+
T Consensus 151 d~~~~~~~~ig-sm~ 164 (171)
T 1y14_B 151 ISQVSSIHAIG-SIK 164 (171)
T ss_dssp EEETTEEEEEE-ECC
T ss_pred EcCCCCcEEEE-EcC
Confidence 97 4 3444 554
No 64
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.70 E-value=2e-18 Score=172.15 Aligned_cols=131 Identities=23% Similarity=0.351 Sum_probs=110.0
Q ss_pred eeEEeeCCcccceeeccccceeeee-cccc--------ce---EEeecCceeEEEEecChhhhHHHHHHHHHhhhcccCC
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTL-TEET--------GT---QIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIG 686 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i-~~~~--------g~---~I~i~~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G 686 (755)
..+++|||++++++|| ++|+.+ +++| |+ .+|++++|...|...+..... ...++.+...+++|
T Consensus 8 ~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g~~~I~~~d~~~~~--~~~~~~i~~~~~~G 82 (187)
T 1go3_E 8 ADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYH--PVVFETLVYIPEMY 82 (187)
T ss_dssp EEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCCSEEE--EEEEEEEEECCCTT
T ss_pred EEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEeeccCCEEeCCCccEEE--EEEEEEEEEccCCC
Confidence 4578999999999998 689985 8888 98 688888888888765554433 22344556789999
Q ss_pred cEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCccccc-----------CcccccCCCCEEEEEEEEEcC-C-----CcE
Q psy3754 687 KVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN-----------IITDFLKENQKVRVKVLGIDD-R-----GRI 749 (755)
Q Consensus 687 ~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~-----------~~~~~~kvGd~V~VkV~~id~-~-----gki 749 (755)
++|.|+|+++.+||+||+|.+ .+||+|+|+++++++. ++.++|++||.|+|||+++|. + ++|
T Consensus 83 ev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~~~~I 161 (187)
T 1go3_E 83 ELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKI 161 (187)
T ss_dssp CEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-----CEE
T ss_pred CEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCCCccEE
Confidence 999999999999999999855 9999999999988875 788999999999999999997 3 499
Q ss_pred EEEEeC
Q psy3754 750 KLSMIY 755 (755)
Q Consensus 750 ~LS~k~ 755 (755)
.||+++
T Consensus 162 ~lS~k~ 167 (187)
T 1go3_E 162 ALTMRQ 167 (187)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 999974
No 65
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.68 E-value=1.6e-18 Score=175.65 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=112.3
Q ss_pred HHHHHhhccccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeec--C--ceeEEEEecChhhhHHHH
Q psy3754 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN--D--EGIITIASFNSVSGQEAK 673 (755)
Q Consensus 598 ~~~~~~~l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~--~--~G~v~i~~~~~~~~~~a~ 673 (755)
+..|.+++..|+.++++++|++.+.+|++++++++||++|++| +.+||+ + +|.+.- .+. ...++
T Consensus 4 L~~m~~~I~ipp~~~~~~~p~~i~~~I~~~~ig~vIg~~G~vI--------~~~dI~~~di~dG~I~~--gdg--~~~~~ 71 (215)
T 2b8k_G 4 IKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYIL--------CVLDYDNIDIQRGRILP--TDG--SAEFN 71 (215)
T ss_dssp EECCEEEEEECGGGCSSSHHHHHHHHHHHSSTTCEETTTEEEE--------EECCSTTCBCCCEEECS--SSC--CEEEE
T ss_pred eHHHHhhhhcCHHHHChhHhHHHHhcCCHHHCCeEcCCCCEEE--------EEEEeeecccccceEeC--CCH--HHHHH
Confidence 3456778888888999999999999999999999999999988 345666 4 677662 111 11222
Q ss_pred HHHHHhhhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCc----------ccccCCCCEEEEEEEEE
Q psy3754 674 RRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII----------TDFLKENQKVRVKVLGI 743 (755)
Q Consensus 674 ~~i~~~~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~----------~~~~kvGd~V~VkV~~i 743 (755)
..++.+...+++|++|+|+|+++++||+||+|.+ .+||||+|+|++.+.-++ +++|++||.|+|||+++
T Consensus 72 v~~~~i~~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~v 150 (215)
T 2b8k_G 72 VKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150 (215)
T ss_dssp EECCEEEECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEE
T ss_pred HHhhhheeccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEE
Confidence 2345556778999999999999999999999977 999999999986543222 26799999999999999
Q ss_pred cC-CC---cEEEEEe
Q psy3754 744 DD-RG---RIKLSMI 754 (755)
Q Consensus 744 d~-~g---ki~LS~k 754 (755)
|. .+ +|. ||+
T Consensus 151 d~~~~~i~~Ig-Smk 164 (215)
T 2b8k_G 151 ISQVSSIHAIG-SIK 164 (215)
T ss_dssp EEETTEEEEEE-ECC
T ss_pred EcCCCccEEEE-EcC
Confidence 97 43 565 665
No 66
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.62 E-value=3e-16 Score=137.12 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=68.5
Q ss_pred hcccCCcEEEEEEEEEEeeeEEEEEc--CCeeEEEecc-ccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 681 ESVQIGKVYTGIVLRLFDFGAIIRIL--SGKDGLLHIS-QISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 681 ~~~~~G~~~~G~V~~I~~fG~FVel~--~g~~Gllhis-el~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
..+++|++|+|+|+ |++||+||+|. ++.+||+|+| +++++|+.++++++ +||+|+|||+++|. +++|.||+|.
T Consensus 7 ~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp CCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred cCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 45789999999999 99999999996 4799999999 99999999999999 99999999999998 8999999984
No 67
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.60 E-value=2.6e-17 Score=161.94 Aligned_cols=141 Identities=15% Similarity=0.161 Sum_probs=106.4
Q ss_pred HHHhhccccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeecC--ceeEEEEecChhhhHHHHHHHH
Q psy3754 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND--EGIITIASFNSVSGQEAKRRIE 677 (755)
Q Consensus 600 ~~~~~l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~--~G~v~i~~~~~~~~~~a~~~i~ 677 (755)
.|++++..++..+++++|++...++++++++++||++|++| +.+++++ +|.+. ..+ ....+...++
T Consensus 6 ~m~~~I~~~p~~~~~~~~~~i~~~l~~~~~~~vi~~~G~~I--------~~~di~~i~~g~i~--~~d--~~~~~~~~~~ 73 (172)
T 2c35_B 6 SLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVI--------AVTTIDNIGAGVIQ--PGR--GFVLYPVKYK 73 (172)
T ss_dssp EEEEEEEECGGGCCSCHHHHHHHHHHHHHTTCEETTTEEEE--------EEEEEEEECCCBCC--TTC--SSEEEEEEEE
T ss_pred EEeEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEE--------EEEEeeecCCeEEe--CCC--CCEEEEEEEE
Confidence 46677888888899999999989999999999999999887 3455554 66555 111 1111112233
Q ss_pred HhhhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccc----c--------CcccccCCCCEEEEEEEEEcC
Q psy3754 678 KLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV----N--------IITDFLKENQKVRVKVLGIDD 745 (755)
Q Consensus 678 ~~~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~----~--------~~~~~~kvGd~V~VkV~~id~ 745 (755)
.+...+++|++|+|+|+++++||+||+| +..+||||+|+|++.+. + +..++|++||.|+|||+++|.
T Consensus 74 ~~~~~~~~Gev~~G~V~~v~~fG~fV~l-~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 152 (172)
T 2c35_B 74 AIVFRPFKGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152 (172)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEEE-TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEE
T ss_pred EEEeeCCCCCEEEEEEEEEeCCEEEEEE-CCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEc
Confidence 4456789999999999999999999999 46779999999976532 2 125589999999999999997
Q ss_pred -CC---cEEEEEe
Q psy3754 746 -RG---RIKLSMI 754 (755)
Q Consensus 746 -~g---ki~LS~k 754 (755)
.+ ++. ||+
T Consensus 153 ~~~~~~~ig-sm~ 164 (172)
T 2c35_B 153 DKNDIFAIG-SLM 164 (172)
T ss_dssp ETTEEEEEE-ECC
T ss_pred CCCCcEEEE-Eec
Confidence 44 454 665
No 68
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.60 E-value=1.3e-15 Score=150.39 Aligned_cols=73 Identities=22% Similarity=0.398 Sum_probs=58.1
Q ss_pred ccCCcEEEEEEEEEEeeeEEEEE--cCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 683 VQIGKVYTGIVLRLFDFGAIIRI--LSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 683 ~~~G~~~~G~V~~I~~fG~FVel--~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
+++|++|.|+|++|++||+||+| .++++||||+|+++|+++.++.++|++||.|+|+|+++|+ +++|+||+|.
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~ 88 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 88 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 58999999999999999999999 5789999999999999999999999999999999999998 8999999974
No 69
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.59 E-value=3.8e-15 Score=127.87 Aligned_cols=70 Identities=27% Similarity=0.471 Sum_probs=65.9
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
++++|++|.|+|+++++||+||+|.++.+||+|+|++++.++ +.|++||+|+|+|+++|+ +|+|.||++.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 578999999999999999999999999999999999998876 789999999999999998 6999999974
No 70
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.59 E-value=1.5e-15 Score=138.16 Aligned_cols=85 Identities=26% Similarity=0.310 Sum_probs=76.6
Q ss_pred HHHHHHHHhhhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcE
Q psy3754 671 EAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRI 749 (755)
Q Consensus 671 ~a~~~i~~~~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki 749 (755)
.+.+.|+.+..++++|++|.|+|++|.+||+||+|.++++||||+|+++++++.++.+.|++||.|+|+|+++|. +++|
T Consensus 17 ~~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki 96 (109)
T 2khj_A 17 RGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAI 96 (109)
T ss_dssp ----CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEE
T ss_pred cccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEE
Confidence 344567778889999999999999999999999999899999999999999999999999999999999999998 6799
Q ss_pred EEEEeC
Q psy3754 750 KLSMIY 755 (755)
Q Consensus 750 ~LS~k~ 755 (755)
.||+|.
T Consensus 97 ~LS~k~ 102 (109)
T 2khj_A 97 SLSVRA 102 (109)
T ss_dssp EEETTS
T ss_pred EEEEee
Confidence 999873
No 71
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.57 E-value=3.3e-15 Score=140.09 Aligned_cols=74 Identities=36% Similarity=0.630 Sum_probs=71.3
Q ss_pred hcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEe
Q psy3754 681 ESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMI 754 (755)
Q Consensus 681 ~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k 754 (755)
..+++|++|.|+|++|++||+||+|.++++||||+|+++++++.++.+.|++||.|+|+|+++|. +++|.||++
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999998 899999986
No 72
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=134.21 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=69.2
Q ss_pred hhcccCCcEEEEEEEEEEeeeEEEEEcC---CeeEEEecccc-CcccccCcccccCCCCEEEEEEEEEcCCCcEEEEEeC
Q psy3754 680 TESVQIGKVYTGIVLRLFDFGAIIRILS---GKDGLLHISQI-SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSMIY 755 (755)
Q Consensus 680 ~~~~~~G~~~~G~V~~I~~fG~FVel~~---g~~Gllhisel-~~~~~~~~~~~~kvGd~V~VkV~~id~~gki~LS~k~ 755 (755)
...+++|++|+|+|++|++||+||+|.+ +++||||+|++ ++.++.++.+.|++||.|+|+|+++|. ++|.||+|.
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~-~~i~LSlk~ 85 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSLSMKD 85 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TEEEEESTT
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC-CeeEEEEee
Confidence 3568999999999999999999999985 89999999999 677888999999999999999999996 799999974
No 73
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.56 E-value=4.5e-15 Score=145.86 Aligned_cols=72 Identities=24% Similarity=0.448 Sum_probs=61.0
Q ss_pred cCCcEEEEEEEEEEeeeEEEEEc--CCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 684 QIGKVYTGIVLRLFDFGAIIRIL--SGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 684 ~~G~~~~G~V~~I~~fG~FVel~--~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
++|++|.|+|++|++||+||+|. ++++||||+|+++|+++.++.++|++||.|+|+|+++|+ +++|.||+|.
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~ 88 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRR 88 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEe
Confidence 59999999999999999999994 789999999999999999999999999999999999998 8999999874
No 74
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=99.54 E-value=4.5e-14 Score=127.23 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=83.2
Q ss_pred cCCC-CCCChhHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHhhcccCCcCChhhHHHHHHHHHHHHHHH
Q psy3754 295 NWDP-IVKDKTLISKIINISEHKIRKAYQ--IKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRK 371 (755)
Q Consensus 295 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~--~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 371 (755)
+|.. +..+++|.+.|++++.++|.+|++ +++|++|+++++++++++.++|.+++ ++....++..+|+++++++||+
T Consensus 7 e~~~~~~~~~el~~~V~~~~~~~l~~A~~~~~~~K~eR~~al~~ik~~v~~~l~~e~-~~~~~~~i~~~~~~lek~~vR~ 85 (104)
T 1whu_A 7 GPQKIFTPSAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKF-PEVDQFEIIESFNIVAKEVFRS 85 (104)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHTTTC-SSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHH
Confidence 3444 457899999999999999999999 99999999999999999999995432 1234568999999999999999
Q ss_pred HHHccCCcCCCCCCCCcc
Q psy3754 372 QILDKGLRIDNRGVNDIR 389 (755)
Q Consensus 372 ~~l~~~~R~DGR~~~e~R 389 (755)
+||++|+|+|||.++|+|
T Consensus 86 ~IL~e~~RiDGR~~deIr 103 (104)
T 1whu_A 86 IILNEYKRCDGRDSGPSS 103 (104)
T ss_dssp HHTTSSCSCCCCCSSCSC
T ss_pred HHHCCCcCCCCCCccccc
Confidence 999999999999999998
No 75
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.54 E-value=6.4e-15 Score=135.30 Aligned_cols=80 Identities=29% Similarity=0.433 Sum_probs=73.1
Q ss_pred HHHhhhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcc-cccCcccccCCCCEEEEEEEEEcC-CCcEEEEE
Q psy3754 676 IEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK-RVNIITDFLKENQKVRVKVLGIDD-RGRIKLSM 753 (755)
Q Consensus 676 i~~~~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~-~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~ 753 (755)
+..+..++++|++|.|+|++|++||+||+|.++++||||+|+++++ ++.++.+.|++||.|+|+|+++|. +++|.||+
T Consensus 21 ~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lsl 100 (115)
T 2khi_A 21 WVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGL 100 (115)
T ss_dssp CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECC
T ss_pred HHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEE
Confidence 3444567899999999999999999999999999999999999984 788999999999999999999998 89999998
Q ss_pred eC
Q psy3754 754 IY 755 (755)
Q Consensus 754 k~ 755 (755)
|.
T Consensus 101 k~ 102 (115)
T 2khi_A 101 KQ 102 (115)
T ss_dssp CC
T ss_pred Ee
Confidence 74
No 76
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.4e-15 Score=137.11 Aligned_cols=79 Identities=30% Similarity=0.467 Sum_probs=71.4
Q ss_pred HHhhhcccCCcEEEEEEEEEEeeeEEEEEcC-CeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-C--CcEEEE
Q psy3754 677 EKLTESVQIGKVYTGIVLRLFDFGAIIRILS-GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-R--GRIKLS 752 (755)
Q Consensus 677 ~~~~~~~~~G~~~~G~V~~I~~fG~FVel~~-g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~--gki~LS 752 (755)
+.+...+++|++|.|+|++|++||+||+|.+ +.+||||+|+++|+++.++.+.|++||.|+|+|+++|. + ++|.||
T Consensus 14 ~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LS 93 (119)
T 2cqo_A 14 ETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS 93 (119)
T ss_dssp CCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEE
T ss_pred hhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEE
Confidence 3455678999999999999999999999955 47999999999999999999999999999999999996 3 799999
Q ss_pred EeC
Q psy3754 753 MIY 755 (755)
Q Consensus 753 ~k~ 755 (755)
+|.
T Consensus 94 lk~ 96 (119)
T 2cqo_A 94 MKV 96 (119)
T ss_dssp STT
T ss_pred Eee
Confidence 874
No 77
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.41 E-value=1.2e-15 Score=150.06 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=104.1
Q ss_pred HHh-hccccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeec--CceeEEEEecChhhhHHHHHHHH
Q psy3754 601 MKT-EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN--DEGIITIASFNSVSGQEAKRRIE 677 (755)
Q Consensus 601 ~~~-~l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~--~~G~v~i~~~~~~~~~~a~~~i~ 677 (755)
|.+ .+.-|...+++.+|+....+++.+.++.++|++|+.|. + +| |++. .+|.+. . .+......-..+
T Consensus 7 l~d~~i~ipp~~~~~~~~~~i~~~l~~~~~g~vi~~~G~~I~-i---~~--idi~~i~~G~I~---~-gdg~~~~~v~f~ 76 (172)
T 3h0g_G 7 ELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIIC-V---LD--SNTIDIDKGRVV---P-GQGFAEFEVKYR 76 (172)
T ss_dssp EEEEEEECCGGGCTTTHHHHHHHHHHHHHTTCEETTTEEEEE-E---CT--TTSEEECCCEEC---T-TTCCEEEEEEEE
T ss_pred EecCeEEeCHHHhCccHHHHHHHHHHHHhCCcCcCCccEEEE-E---Ee--eeeeEeeCCEEE---C-CCCcEEEEEEEE
Confidence 445 56667777888888888888999999999999999888 5 33 3333 255543 1 111111111134
Q ss_pred HhhhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccc----------cCcccccCCCCEEEEEEEEEcC-C
Q psy3754 678 KLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV----------NIITDFLKENQKVRVKVLGIDD-R 746 (755)
Q Consensus 678 ~~~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~----------~~~~~~~kvGd~V~VkV~~id~-~ 746 (755)
.+...+.+|++|+|+|+++++||+||+|. ..+||+|+|+|++.+. ++..+.+++||+|+|||+++|. .
T Consensus 77 ~ivf~p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~ 155 (172)
T 3h0g_G 77 AVLWRPFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDA 155 (172)
T ss_dssp EEEECCCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESS
T ss_pred EeeeccCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCC
Confidence 45678999999999999999999999984 5789999999976543 3446789999999999999997 4
Q ss_pred ---CcEEEEEe
Q psy3754 747 ---GRIKLSMI 754 (755)
Q Consensus 747 ---gki~LS~k 754 (755)
.+|. ||+
T Consensus 156 ~~~~~Ig-tm~ 165 (172)
T 3h0g_G 156 TEIFAIA-TMK 165 (172)
T ss_dssp SCEEEEE-ECC
T ss_pred CCceEEE-EcC
Confidence 3555 665
No 78
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.41 E-value=2.6e-13 Score=144.26 Aligned_cols=73 Identities=26% Similarity=0.474 Sum_probs=69.9
Q ss_pred ccCCcEEEEEEEEEEeeeEEEEEc--CCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 683 VQIGKVYTGIVLRLFDFGAIIRIL--SGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 683 ~~~G~~~~G~V~~I~~fG~FVel~--~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
+++|++|.|+|++|++||+||+|. ++++||||+|+++|+++.++.+.|++||.|+|+|+++|+ +++|.||+|.
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~ 86 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRR 86 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSS
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 579999999999999999999997 789999999999999999999999999999999999998 8999999974
No 79
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.41 E-value=3.4e-13 Score=141.54 Aligned_cols=73 Identities=37% Similarity=0.625 Sum_probs=69.7
Q ss_pred ccCCcEEEEEEEEEEeeeEEEEEc--CCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 683 VQIGKVYTGIVLRLFDFGAIIRIL--SGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 683 ~~~G~~~~G~V~~I~~fG~FVel~--~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
+++|++|.|+|++|.+||+||+|. ++++||||+|+++++++.++.+.|++||.|.|+|+++|+ +++|.||+|.
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~ 84 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRR 84 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 569999999999999999999997 689999999999999999999999999999999999998 8999999874
No 80
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.40 E-value=5.9e-13 Score=140.57 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=65.7
Q ss_pred HHHHhhhcccCCcEEEEEEEEEEeeeEEE-EEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEE
Q psy3754 675 RIEKLTESVQIGKVYTGIVLRLFDFGAII-RILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLS 752 (755)
Q Consensus 675 ~i~~~~~~~~~G~~~~G~V~~I~~fG~FV-el~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS 752 (755)
.|......+++|++++|+|+++++||+|| ++.++++||||+||++. .+++||+|+|+|+++|+ +|||+||
T Consensus 142 ~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~id~~d~kI~LS 213 (285)
T 3go5_A 142 RLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGFREVDRTLNLS 213 (285)
T ss_dssp HHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred hhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc--------cCCCCCEEEEEEEEEECCCCeEEEE
Confidence 34444567899999999999999999999 99899999999999973 49999999999999999 9999999
Q ss_pred EeC
Q psy3754 753 MIY 755 (755)
Q Consensus 753 ~k~ 755 (755)
+|.
T Consensus 214 lk~ 216 (285)
T 3go5_A 214 LKP 216 (285)
T ss_dssp CSC
T ss_pred eCh
Confidence 974
No 81
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.36 E-value=6.7e-14 Score=138.59 Aligned_cols=78 Identities=28% Similarity=0.482 Sum_probs=68.6
Q ss_pred HHhhhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccc-----------cCcccccCCCCEEEEEEEEEcC
Q psy3754 677 EKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV-----------NIITDFLKENQKVRVKVLGIDD 745 (755)
Q Consensus 677 ~~~~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~-----------~~~~~~~kvGd~V~VkV~~id~ 745 (755)
+.+...+.+|++|+|+|+++++||+||++ ++.+||+|+|+++++++ +++.++|++||.|+|||+++|.
T Consensus 73 ~~iv~~p~~Gev~~G~V~~v~~~G~fv~l-~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~ 151 (180)
T 4ayb_E 73 DMITYVPVVQEVVEGEVLQVDNYGVFVNL-GPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVAS 151 (180)
T ss_dssp EEEEECCCTTCEEEEEEEEEETTEEEEEC-SSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC
T ss_pred heeeeeccCCCEEEEEEeeeccceEEEEE-CCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeC
Confidence 44567899999999999999999999997 46999999999999876 5788899999999999999985
Q ss_pred -----CCcEEEEEeC
Q psy3754 746 -----RGRIKLSMIY 755 (755)
Q Consensus 746 -----~gki~LS~k~ 755 (755)
.++|.||||+
T Consensus 152 ~~~~~~~rI~ls~k~ 166 (180)
T 4ayb_E 152 TVTGRLPRIALTMRQ 166 (180)
T ss_dssp -------CEEEECCS
T ss_pred CCCcccCcEEEEcCC
Confidence 3689999985
No 82
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.32 E-value=4.1e-13 Score=140.50 Aligned_cols=74 Identities=35% Similarity=0.547 Sum_probs=70.5
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEc--CCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRIL--SGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~--~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
.+++|++|.|+|++|.+||+||+|. ++.+||||+|+++|+++.++.+.|++||.|.|+|+++|+ +|+|.||+|.
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 4789999999999999999999997 789999999999999999999999999999999999998 8999999873
No 83
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.27 E-value=3.1e-12 Score=118.01 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=62.7
Q ss_pred hcccCCcEEEEEEEEEEeeeEEEEEc-CCeeEEEecccc-CcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 681 ESVQIGKVYTGIVLRLFDFGAIIRIL-SGKDGLLHISQI-SSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 681 ~~~~~G~~~~G~V~~I~~fG~FVel~-~g~~Gllhisel-~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
.++++|++|.|+|++|++||+||+|. ++.+||+|.++. +|.++.++.+.|++||.|+|+|+++|. +++|.||++.
T Consensus 17 ~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~ 94 (119)
T 1wi5_A 17 EALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGH 94 (119)
T ss_dssp TTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCC
T ss_pred hcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEch
Confidence 56899999999999999999999997 455555555443 244556889999999999999999998 7899999874
No 84
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.6e-11 Score=150.45 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=71.1
Q ss_pred hcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCccc-ccCcccccCCCCEEEEEEEEEcC-CCcEEEEEe
Q psy3754 681 ESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR-VNIITDFLKENQKVRVKVLGIDD-RGRIKLSMI 754 (755)
Q Consensus 681 ~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~-~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k 754 (755)
.++++|++|.|+|++|++||+||+|.+|++||||+|+|++++ +.+|.++|++||.|+|||+++|. +++|.||+|
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk 973 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLL 973 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECC
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEec
Confidence 568899999999999999999999999999999999999998 89999999999999999999997 899999987
No 85
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.17 E-value=3.8e-11 Score=118.59 Aligned_cols=69 Identities=28% Similarity=0.374 Sum_probs=65.4
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEcC----------CeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCcEEE
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRILS----------GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKL 751 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~~----------g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gki~L 751 (755)
.++ |++|.|+|++|.+|||||+|.+ +.+||||+|++++.++.++.+.|++||.|+|+|++ +++.|
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~----~~i~L 129 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG----DNLRL 129 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE----TTTEE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC----CeEEE
Confidence 478 9999999999999999999987 89999999999999999999999999999999998 89999
Q ss_pred EEeC
Q psy3754 752 SMIY 755 (755)
Q Consensus 752 S~k~ 755 (755)
|+|+
T Consensus 130 S~k~ 133 (179)
T 3m7n_A 130 STKE 133 (179)
T ss_dssp ECCS
T ss_pred EEec
Confidence 9874
No 86
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.16 E-value=6.8e-12 Score=148.16 Aligned_cols=75 Identities=37% Similarity=0.544 Sum_probs=71.0
Q ss_pred hcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 681 ESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 681 ~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
.++++|++|.|+|++|++||+||+|..+.+||||+|+|+|.++.++.++|++||.|+|||+++|. +++|.||+|.
T Consensus 650 ~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp TTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred hhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 35789999999999999999999998889999999999999999999999999999999999998 8999999873
No 87
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.15 E-value=4.9e-11 Score=120.43 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=68.2
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEc--------CCeeEEEeccccCccccc--CcccccCCCCEEEEEEEEEcC-CCcEE
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRIL--------SGKDGLLHISQISSKRVN--IITDFLKENQKVRVKVLGIDD-RGRIK 750 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~--------~g~~Gllhisel~~~~~~--~~~~~~kvGd~V~VkV~~id~-~gki~ 750 (755)
.+++|+++.|+|++|.+|||||+|. .+.+|+||+||+++.+.. ++.+.|++||.|+|||++++. ++++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 5799999999999999999999984 478999999999999888 899999999999999999997 46899
Q ss_pred EEEeC
Q psy3754 751 LSMIY 755 (755)
Q Consensus 751 LS~k~ 755 (755)
||+|+
T Consensus 158 LS~k~ 162 (209)
T 2nn6_I 158 LTTAE 162 (209)
T ss_dssp EECCS
T ss_pred EEEec
Confidence 99874
No 88
>3h36_A Polyribonucleotide nucleotidyltransferase; polyribonucleotide nucleotidyltransfer structural genomics, PSI-2, protein structure initiative; 1.80A {Streptococcus mutans}
Probab=99.15 E-value=8.8e-11 Score=103.49 Aligned_cols=85 Identities=19% Similarity=0.292 Sum_probs=65.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhcccCCcCCh-----hhHHHHHHHHHHHHHH
Q psy3754 296 WDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDI-----NDINCILYDLESKIIR 370 (755)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~r 370 (755)
|.++..+++|.+.|++.++++|++|+++.+|++|+++++++++++.++|.++. ++... .++..+|++++++.||
T Consensus 4 ~~~~~~~~el~~~v~~~~~~~l~~a~~~~~K~eR~~a~~~ik~~v~~~l~e~~-~~~~~~~~~~~~i~~~~~~lek~ivR 82 (93)
T 3h36_A 4 VELLQVDADLQAEIVGKYNADLQKAVQIEEKKASEIATEAVKEHVTAEYEERY-AEHEEHDRIMRDVAEILEQMEHAEVR 82 (93)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHhhC-ccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999997543 22221 6899999999999999
Q ss_pred HHHHccCCcCC
Q psy3754 371 KQILDKGLRID 381 (755)
Q Consensus 371 ~~~l~~~~R~D 381 (755)
++||++|+|+|
T Consensus 83 ~~IL~e~~RiD 93 (93)
T 3h36_A 83 RLITEDKVRPD 93 (93)
T ss_dssp HHC--------
T ss_pred HHHHCCCCCCC
Confidence 99999999998
No 89
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.11 E-value=6.8e-12 Score=151.60 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred hcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCccc-ccCcccccCCCCEEEEEEEEEcC-CCcEEEEEeC
Q psy3754 681 ESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR-VNIITDFLKENQKVRVKVLGIDD-RGRIKLSMIY 755 (755)
Q Consensus 681 ~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~-~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~k~ 755 (755)
.++++|++|.|+|++|++||+||+|.+|++||||+|++++++ +.+|.++|++||.|+|||+++|. +++|.||+|.
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 567899999999999999999999999999999999999998 89999999999999999999997 8999999974
No 90
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=1.9e-11 Score=106.32 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=61.7
Q ss_pred CCCceeEEeeCCcccceeeccccceeeeeccccceE-EeecC-ceeEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 615 FAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQ-IDIND-EGIITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 615 ~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~-I~i~~-~G~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
-.|.+++++|||+||+++|||||++||.|+++||++ |++++ +|.|.|++.+.+++++|+++++.+-..+
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie~~~ 82 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFI 82 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhheEE
Confidence 346788999999999999999999999999999998 99986 5999999999999999999987655444
No 91
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=5.5e-11 Score=106.95 Aligned_cols=78 Identities=24% Similarity=0.326 Sum_probs=70.2
Q ss_pred ccccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeecCce----eEEEEecChhhhHHHHHHHHHhh
Q psy3754 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG----IITIASFNSVSGQEAKRRIEKLT 680 (755)
Q Consensus 605 l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G----~v~i~~~~~~~~~~a~~~i~~~~ 680 (755)
+...+..+++++|.++++.||+++++.+||+||++||.|+++||++|++.++| .|.|++.. +.+++|+++|..+.
T Consensus 4 ~~~Ak~~i~~~ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~-e~v~~A~~~I~~i~ 82 (104)
T 2ctk_A 4 GSSGKEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLA-ANLDRAKAGLLERV 82 (104)
T ss_dssp CCCCCCCCCCSSCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCH-HHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999887 99999986 88999999998776
Q ss_pred hcc
Q psy3754 681 ESV 683 (755)
Q Consensus 681 ~~~ 683 (755)
.++
T Consensus 83 ~e~ 85 (104)
T 2ctk_A 83 KEL 85 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 543
No 92
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=99.01 E-value=3.2e-10 Score=117.61 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=69.3
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccc---cCcccccCCCCEEEEEEEEEcCCCcEEEEEeC
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV---NIITDFLKENQKVRVKVLGIDDRGRIKLSMIY 755 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~---~~~~~~~kvGd~V~VkV~~id~~gki~LS~k~ 755 (755)
.+++||++.|+|+++.++|+||+|.++.+|+||+|++.+.+. .++.+.|++||.|.|+|++++.++++.||++.
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~ 147 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKG 147 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 579999999999999999999999888999999999998877 78899999999999999999988899999874
No 93
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.95 E-value=1.4e-09 Score=111.40 Aligned_cols=74 Identities=23% Similarity=0.298 Sum_probs=68.7
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcc-cccCcccccCCCCEEEEEEEEEcCCCcEEEEEeC
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK-RVNIITDFLKENQKVRVKVLGIDDRGRIKLSMIY 755 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~-~~~~~~~~~kvGd~V~VkV~~id~~gki~LS~k~ 755 (755)
.|++||++.|+|+++.++|+||+|....+|+||+|++.++ +..++.+.|++||.|.++|++++.++++.||+++
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~ 128 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD 128 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 4799999999999999999999998889999999999974 6778899999999999999999988999999874
No 94
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.90 E-value=1.3e-09 Score=112.16 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=67.5
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcc----cccCcccccCCCCEEEEEEEEEcCCCcEEEEEeC
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK----RVNIITDFLKENQKVRVKVLGIDDRGRIKLSMIY 755 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~----~~~~~~~~~kvGd~V~VkV~~id~~gki~LS~k~ 755 (755)
.+++||++.|+|+++.++|+||+|..+.+|+||+|+++++ +..++.+.|++||.|.++|++++.++++.||++.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEec
Confidence 5799999999999999999999998889999999999873 4567888999999999999999987899999874
No 95
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.80 E-value=7.7e-10 Score=112.23 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=61.6
Q ss_pred hccccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeec-CceeEEEEecC----hhhhHHHHHHHHH
Q psy3754 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN-DEGIITIASFN----SVSGQEAKRRIEK 678 (755)
Q Consensus 604 ~l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~-~~G~v~i~~~~----~~~~~~a~~~i~~ 678 (755)
....|++++++++|++..+.||+++++.+||+||++|+.|+++||++|+++ ++|.|.|...+ ..++++|+++|+.
T Consensus 20 ~~~~pr~e~s~~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~ 99 (219)
T 2e3u_A 20 EIVEDEDEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLA 99 (219)
T ss_dssp -------------CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999 89999999887 7899999999998
Q ss_pred hh
Q psy3754 679 LT 680 (755)
Q Consensus 679 ~~ 680 (755)
+.
T Consensus 100 i~ 101 (219)
T 2e3u_A 100 IG 101 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 87
No 96
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.75 E-value=3e-08 Score=104.65 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=59.9
Q ss_pred cccCCcEEEEEEEEEE-eeeEEEEEcC-CeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCcEEEEEe
Q psy3754 682 SVQIGKVYTGIVLRLF-DFGAIIRILS-GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSMI 754 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~-~fG~FVel~~-g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gki~LS~k 754 (755)
.+++|+++.|+|++++ +|||||++.. +.+||||+||++|.+.. .+++||++.|+ +.+|+++||.||+|
T Consensus 66 ~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~~----~~~~Gd~v~v~-l~iD~~~Ri~ls~k 135 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKEL----WPKKGDQLYIR-LEVDKKDRIWGLLA 135 (285)
T ss_dssp CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGGG----SCCTTCEEEEE-EEECTTSCEEEEEC
T ss_pred cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCccccc----ccCCCCEEEEE-EEECCCCcEEEEeh
Confidence 4689999999999999 8999999975 69999999999987543 47999999766 58999899999986
No 97
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.69 E-value=2.8e-09 Score=94.15 Aligned_cols=66 Identities=29% Similarity=0.424 Sum_probs=60.6
Q ss_pred eeEEeeCCcccceeeccccceeeeecccc-ceEEeecCce----eEEEEecChhhhHHHHHHHHHhhhcccC
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTLTEET-GTQIDINDEG----IITIASFNSVSGQEAKRRIEKLTESVQI 685 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i~~~~-g~~I~i~~~G----~v~i~~~~~~~~~~a~~~i~~~~~~~~~ 685 (755)
.+++.|||++++.+||+||++||.|+++| |++|++.++| .|.|++++. .+++|+++++.++.+++.
T Consensus 18 t~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv~e~e~ 88 (95)
T 2ctj_A 18 EVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHLAEEKQT 88 (95)
T ss_dssp CEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHHHHHHSC
T ss_pred EEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHHHhhhhh
Confidence 35789999999999999999999999999 9999999999 999999987 999999999998877653
No 98
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.69 E-value=6.2e-09 Score=86.93 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=55.0
Q ss_pred eeEEeeCCcccceeeccccceeeeeccccceEEeecCce----eEEEEecChhhhHHHHHHHHHh
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG----IITIASFNSVSGQEAKRRIEKL 679 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G----~v~i~~~~~~~~~~a~~~i~~~ 679 (755)
.+.+.||+++++.+||+||++|+.|+++||++|++.++| .|.|++. .+.+++|++++..+
T Consensus 6 ~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i 69 (71)
T 1vig_A 6 YVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLEL 69 (71)
T ss_dssp EEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHT
T ss_pred EEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999 9999998 57899999988765
No 99
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.68 E-value=6.6e-09 Score=93.36 Aligned_cols=74 Identities=22% Similarity=0.388 Sum_probs=66.3
Q ss_pred ccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeecC--------ceeEEEEecChhhhHHHHHHHHH
Q psy3754 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND--------EGIITIASFNSVSGQEAKRRIEK 678 (755)
Q Consensus 607 ~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~--------~G~v~i~~~~~~~~~~a~~~i~~ 678 (755)
..+.++++++|....+.||+++++.+||+||++||.|+++||++|+|++ ++.|.|+.... .+++|+++|..
T Consensus 4 ~~~~~~s~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-~v~~A~~~I~~ 82 (104)
T 1we8_A 4 GSSGILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-EVAAAKHLILE 82 (104)
T ss_dssp CCCCCCSSSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-HHHHHHHHHHH
T ss_pred CCccccCCCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-HHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999974 78999998866 68999999887
Q ss_pred hhh
Q psy3754 679 LTE 681 (755)
Q Consensus 679 ~~~ 681 (755)
++.
T Consensus 83 ~i~ 85 (104)
T 1we8_A 83 KVS 85 (104)
T ss_dssp HHH
T ss_pred HHh
Confidence 763
No 100
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.67 E-value=5.1e-08 Score=114.20 Aligned_cols=94 Identities=9% Similarity=0.090 Sum_probs=72.0
Q ss_pred EEecChhhhHHHHHHHH---HhhhcccCCc--EEEEEEEEEEeeeEEEEEc-CCeeEEEeccccCc--cccc--------
Q psy3754 661 IASFNSVSGQEAKRRIE---KLTESVQIGK--VYTGIVLRLFDFGAIIRIL-SGKDGLLHISQISS--KRVN-------- 724 (755)
Q Consensus 661 i~~~~~~~~~~a~~~i~---~~~~~~~~G~--~~~G~V~~I~~fG~FVel~-~g~~Gllhisel~~--~~~~-------- 724 (755)
++...+.+.+..++... ......++|+ +|+|+|++|++||+||+|. .|++||||+|+|++ +++.
T Consensus 531 ~s~~er~a~~aer~~~~~~~~~~l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l 610 (644)
T 2id0_A 531 MAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTV 610 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEE
Confidence 34444444444444333 2224568999 9999999999999999994 68999999999974 3311
Q ss_pred --CcccccCCCCEEEEEEEEEcC-CCcEEEEEe
Q psy3754 725 --IITDFLKENQKVRVKVLGIDD-RGRIKLSMI 754 (755)
Q Consensus 725 --~~~~~~kvGd~V~VkV~~id~-~gki~LS~k 754 (755)
+....|++||+|+|+|.++|. +++|.|++.
T Consensus 611 ~~~~~~~~~lGD~V~VkV~~vd~~~~~I~~~l~ 643 (644)
T 2id0_A 611 QIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 (644)
T ss_dssp EETTEEEEETTCEEEEEEEEEETTTTEEEEEEC
T ss_pred EecCCCEeCCCCEEEEEEEEEeCCCCEEEEEEc
Confidence 456789999999999999998 899999975
No 101
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.65 E-value=1.1e-08 Score=91.38 Aligned_cols=68 Identities=26% Similarity=0.376 Sum_probs=57.3
Q ss_pred ccceEEeec---CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCccc
Q psy3754 646 ETGTQIDIN---DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722 (755)
Q Consensus 646 ~~g~~I~i~---~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~ 722 (755)
-|| +|..+ .|..+|+++..+... ....+++|++|+++|+++.+||+||+|.++++||||+|+|+|.+
T Consensus 29 GfG-FI~~~~gg~dvfvH~s~l~~~~~---------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~ 98 (101)
T 2bh8_A 29 GFG-FITPDDGSKDVFVHFSAGSSGAA---------VRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQ 98 (101)
T ss_dssp TEE-EEEESSSSCEEEEECCCSCSSSC---------CCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECC
T ss_pred CCE-EEEeCCCCcEEEEEEEEEecCCc---------cccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCc
Confidence 467 77654 578899988876542 23679999999999999999999999989999999999999987
Q ss_pred c
Q psy3754 723 V 723 (755)
Q Consensus 723 ~ 723 (755)
+
T Consensus 99 ~ 99 (101)
T 2bh8_A 99 A 99 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 102
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.61 E-value=2e-08 Score=86.80 Aligned_cols=63 Identities=29% Similarity=0.413 Sum_probs=58.6
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecCcee--------EEEEecChhhhHHHHHHHHHhhh
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI--------ITIASFNSVSGQEAKRRIEKLTE 681 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~--------v~i~~~~~~~~~~a~~~i~~~~~ 681 (755)
.+..+.||+++++.+||+||++||.|+++||++|+++++|. |.|+. +...++.|.+++..++.
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999999999998887 99998 88899999999987764
No 103
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.57 E-value=2.1e-08 Score=94.49 Aligned_cols=39 Identities=31% Similarity=0.462 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhccCcccchhhhhhhhhcc
Q psy3754 25 PEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMKGNF 63 (755)
Q Consensus 25 ~evqia~lt~~I~~l~~h~~~~~kd~~~~~~l~~~v~~r 63 (755)
..-|+..||+||++|++||+.|+||+||||||++||+||
T Consensus 91 iPEDL~~Lt~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kR 129 (158)
T 3j20_Q 91 IPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKI 129 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 446889999999999999999999999999999999999
No 104
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.57 E-value=8.3e-08 Score=96.52 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=57.5
Q ss_pred hhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccc-------------------cCcccccCCCCEEEEEE
Q psy3754 680 TESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV-------------------NIITDFLKENQKVRVKV 740 (755)
Q Consensus 680 ~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~-------------------~~~~~~~kvGd~V~VkV 740 (755)
...+.+|++++|+|+++++||+||+| +.++||+|++++.++++ ++....|++||.|+|||
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV 154 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEE
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEE
Confidence 45689999999999999999999998 67899999999977653 45566899999999999
Q ss_pred EEEcC
Q psy3754 741 LGIDD 745 (755)
Q Consensus 741 ~~id~ 745 (755)
.++|.
T Consensus 155 ~~v~~ 159 (203)
T 3ayh_B 155 ESEDF 159 (203)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99985
No 105
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.52 E-value=2.7e-08 Score=87.79 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=59.8
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecCce-----eEEEEecChhhhHHHHHHHHHhhhccc
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG-----IITIASFNSVSGQEAKRRIEKLTESVQ 684 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G-----~v~i~~~~~~~~~~a~~~i~~~~~~~~ 684 (755)
....+.||+++++.+||+||++||.|+++||++|++.++| .|.|+.. .+.+++|++++..+..+++
T Consensus 17 vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 17 VSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp CCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999888 8999988 5889999999988887654
No 106
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.2e-07 Score=96.19 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=57.4
Q ss_pred hhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccc--------------cCcccccCCCCEEEEEEEEEcC
Q psy3754 680 TESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV--------------NIITDFLKENQKVRVKVLGIDD 745 (755)
Q Consensus 680 ~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~--------------~~~~~~~kvGd~V~VkV~~id~ 745 (755)
...+.+|++++|+|+++++||+||+|.+.++||+|++++.++++ ++....|++||.|+|||.++|.
T Consensus 76 ~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~ 155 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEE
T ss_pred EecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEc
Confidence 56789999999999999999999999777899999999976653 3446679999999999999986
No 107
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.48 E-value=4.2e-08 Score=86.98 Aligned_cols=65 Identities=22% Similarity=0.419 Sum_probs=58.2
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecCce-------eEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG-------IITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G-------~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
....+.||+++++.+||+||++|+.|+++||++|++.++| .|.|+.. ...+++|+++|..+..++
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999998777 8999987 788999999998877654
No 108
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.47 E-value=2e-07 Score=105.20 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=57.7
Q ss_pred cccCCcEEEEEEEEEEee--eEEEEEcCCeeEEEeccccCcccc---------cCcccccCCCCEEEEEEEEEcC
Q psy3754 682 SVQIGKVYTGIVLRLFDF--GAIIRILSGKDGLLHISQISSKRV---------NIITDFLKENQKVRVKVLGIDD 745 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~f--G~FVel~~g~~Gllhisel~~~~~---------~~~~~~~kvGd~V~VkV~~id~ 745 (755)
...+|++|.|+|++|.++ ||||+|.++.+||||+|++++.++ .++.+++++||+|.|+|++...
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~ 116 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEER 116 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeecc
Confidence 468999999999999999 999999999999999999988774 3466889999999999999764
No 109
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.4e-07 Score=112.49 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=61.3
Q ss_pred ccCCcEEEEEEEEEEeeeEEEEEcC-CeeEEEeccccC--cccc-----------cC----cccccCCCCEEEEEEEEEc
Q psy3754 683 VQIGKVYTGIVLRLFDFGAIIRILS-GKDGLLHISQIS--SKRV-----------NI----ITDFLKENQKVRVKVLGID 744 (755)
Q Consensus 683 ~~~G~~~~G~V~~I~~fG~FVel~~-g~~Gllhisel~--~~~~-----------~~----~~~~~kvGd~V~VkV~~id 744 (755)
.+ |++++|+|++|++||+||+|.+ |++||||+|+|+ ++++ ++ +...|++||+|+|+|.++|
T Consensus 885 ~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd 963 (977)
T 2wp8_J 885 NN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 963 (977)
T ss_dssp HT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCC
T ss_pred cc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEc
Confidence 35 9999999999999999999987 899999999997 4431 22 4578999999999999998
Q ss_pred C----CCcEEEEEe
Q psy3754 745 D----RGRIKLSMI 754 (755)
Q Consensus 745 ~----~gki~LS~k 754 (755)
. ++||.||+|
T Consensus 964 ~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 964 DPITSKRKAELLLK 977 (977)
T ss_dssp CSSSCCCCCCEEEC
T ss_pred CcccCCCceEEEeC
Confidence 6 279999997
No 110
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.42 E-value=6.1e-08 Score=85.39 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=58.5
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecC----ceeEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND----EGIITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~----~G~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
....+.||+++++.+||+||++||.|+++||++|++.+ +|.|.|++. ...+++|+++|..++.+.
T Consensus 17 ~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 17 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp EEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhcc
Confidence 35688999999999999999999999999999999963 689999998 889999999998887654
No 111
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.40 E-value=3.4e-07 Score=109.04 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=54.3
Q ss_pred ccCCcEEEEEEEEEEeeeEEEEEcC-CeeEEEeccccC--cccc-----------cC----cccccCCCCEEEEEEEEEc
Q psy3754 683 VQIGKVYTGIVLRLFDFGAIIRILS-GKDGLLHISQIS--SKRV-----------NI----ITDFLKENQKVRVKVLGID 744 (755)
Q Consensus 683 ~~~G~~~~G~V~~I~~fG~FVel~~-g~~Gllhisel~--~~~~-----------~~----~~~~~kvGd~V~VkV~~id 744 (755)
-++ ++|+|+|++|++||+||+|.+ |++||||+|+++ ++++ .+ +...|++||+|+|+|.++|
T Consensus 668 ~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd 746 (760)
T 2vnu_D 668 NNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 746 (760)
T ss_dssp TCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC---
T ss_pred cCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEE
Confidence 355 899999999999999999987 899999999996 4431 23 2578999999999999998
Q ss_pred CC----CcEEEEEe
Q psy3754 745 DR----GRIKLSMI 754 (755)
Q Consensus 745 ~~----gki~LS~k 754 (755)
.+ +||.||+|
T Consensus 747 ~~~~~~~kI~lslk 760 (760)
T 2vnu_D 747 DPITSKRKAELLLK 760 (760)
T ss_dssp -----CCEEEC---
T ss_pred CccccCCcEEEEeC
Confidence 64 89999986
No 112
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.36 E-value=1.2e-07 Score=85.40 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=58.5
Q ss_pred cCCCceeEEeeCCcccceeeccccceeeeeccccceEEeecCce------eEEEEecChhhhHHHHHHHHHhhhcccCC
Q psy3754 614 KFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG------IITIASFNSVSGQEAKRRIEKLTESVQIG 686 (755)
Q Consensus 614 ~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G------~v~i~~~~~~~~~~a~~~i~~~~~~~~~G 686 (755)
.+.|++..+.||+++++.+||++|++||.|+++||++|+|+++. .|.|+.. .+.+++|+++|+.++.+.+.|
T Consensus 7 ~~~~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 7 SRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp -----CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhccccC
Confidence 45688899999999999999999999999999999999997433 6889876 788999999999988776654
No 113
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.34 E-value=3.6e-07 Score=98.16 Aligned_cols=68 Identities=24% Similarity=0.186 Sum_probs=59.5
Q ss_pred hhccc--CCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-C--CcEEEEEe
Q psy3754 680 TESVQ--IGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-R--GRIKLSMI 754 (755)
Q Consensus 680 ~~~~~--~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~--gki~LS~k 754 (755)
+.+++ +|++++|+|.++.++|+||++ ++.+|+||.+|+. |.+.|++||+|+|.|++++. + ++|.||++
T Consensus 127 ~~e~~~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 127 FEKYSELKGTVTTAEVIRVMGEWADIRI-GKLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp SCCTTCCTTCEEEEEEEEECSSEEEEEE-TTEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred HHHHhhcCCCEEEEEEEEEecCcEEEEe-CCeEEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 34454 899999999999999999998 5899999999986 56789999999999999985 2 58899875
No 114
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.32 E-value=3e-07 Score=97.61 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=62.9
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcc----ccc------CcccccCCCCEEEEEEEEEcCCCcEEE
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK----RVN------IITDFLKENQKVRVKVLGIDDRGRIKL 751 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~----~~~------~~~~~~kvGd~V~VkV~~id~~gki~L 751 (755)
.|++||+|.|+|+++.++|+||+|....+|++|+|+++.. |.. ++.+.|++||.|.+||++++.++++.|
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~L 171 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSL 171 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEE
Confidence 5899999999999999999999998789999999999753 221 345789999999999999998889999
Q ss_pred EEeC
Q psy3754 752 SMIY 755 (755)
Q Consensus 752 S~k~ 755 (755)
|+++
T Consensus 172 Str~ 175 (308)
T 2nn6_H 172 HTRS 175 (308)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9863
No 115
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.30 E-value=2.4e-07 Score=81.58 Aligned_cols=68 Identities=32% Similarity=0.448 Sum_probs=60.0
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecCcee--------EEEEecChhhhHHHHHHHHHhhhcccCC
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI--------ITIASFNSVSGQEAKRRIEKLTESVQIG 686 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~--------v~i~~~~~~~~~~a~~~i~~~~~~~~~G 686 (755)
....+.||+++++.+||++|++||.|+++||++|++++++. |.|+. +.+.++.|+++|..++.+.+.|
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~~~~~ 90 (94)
T 1x4m_A 15 AVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRDQGSG 90 (94)
T ss_dssp EEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCCCSSC
T ss_pred EEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhccCCC
Confidence 34578899999999999999999999999999999987665 99988 7789999999999988876654
No 116
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.27 E-value=1.5e-06 Score=84.95 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=63.6
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEcC-CeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCcEEEE
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRILS-GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~~-g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gki~LS 752 (755)
.|++||+|.|+|+++..++++|+|.+ ..+|+||+|++. ....+....|++||.|.++|.+++.++++.||
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Lt 74 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEKELEAEIE 74 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCTTSCCEEE
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecCCCceEEE
Confidence 47899999999999999999999988 899999999986 33566778899999999999999888899998
No 117
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.9e-07 Score=85.58 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=52.3
Q ss_pred cccceeeccccceeeeeccccceEEeec----------------CceeEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 627 SKIRDVIGKGGSTIRTLTEETGTQIDIN----------------DEGIITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 627 ~ki~~~IG~gGk~ik~i~~~~g~~I~i~----------------~~G~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
++|+.+|||||++||.|+++||++|+|. ++|.|+|++.+.+.+++|+++++.++..+
T Consensus 28 n~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~~v 100 (119)
T 2yqr_A 28 NVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTV 100 (119)
T ss_dssp CHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhhch
Confidence 4899999999999999999999999996 66899999999999999999998887643
No 118
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.25 E-value=4e-07 Score=84.93 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=56.6
Q ss_pred eEEeeCCc------ccceeeccccceeeeeccccceEEeecC----------------------ceeEEEEecChhhhHH
Q psy3754 620 ITIKIDPS------KIRDVIGKGGSTIRTLTEETGTQIDIND----------------------EGIITIASFNSVSGQE 671 (755)
Q Consensus 620 ~~~~i~~~------ki~~~IG~gGk~ik~i~~~~g~~I~i~~----------------------~G~v~i~~~~~~~~~~ 671 (755)
+.+.||++ +|+.+|||+|++||.|+++||++|+|.. +|.|+|++.+...+++
T Consensus 9 ~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~ 88 (131)
T 1k1g_A 9 DKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKK 88 (131)
T ss_dssp EEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHH
T ss_pred EEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHH
Confidence 45677777 8889999999999999999999999953 7899999999999999
Q ss_pred HHHHHHHhhhc
Q psy3754 672 AKRRIEKLTES 682 (755)
Q Consensus 672 a~~~i~~~~~~ 682 (755)
|.++|+.++..
T Consensus 89 A~~~I~~ll~~ 99 (131)
T 1k1g_A 89 AVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999998865
No 119
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.22 E-value=3.8e-07 Score=76.44 Aligned_cols=64 Identities=27% Similarity=0.393 Sum_probs=56.2
Q ss_pred CceeEEeeCCcccceeeccccceeeeeccccceEEeecCce----eEEEEecChhhhHHHHHHHHHhhh
Q psy3754 617 PRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG----IITIASFNSVSGQEAKRRIEKLTE 681 (755)
Q Consensus 617 P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G----~v~i~~~~~~~~~~a~~~i~~~~~ 681 (755)
+....+.||+++++.+||+||++|+.|+++||++|++.++| .+.|++. .+.+.+|.+++...+.
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999999999999998766 5899888 7888999998877654
No 120
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.17 E-value=9.5e-07 Score=85.35 Aligned_cols=93 Identities=19% Similarity=0.379 Sum_probs=72.3
Q ss_pred hhHHHHHHHHhhccccccccccCCCce---eEEeeCCcccceeeccccceeeeeccccceEEeecC------ceeEEEEe
Q psy3754 593 GLSYILEKMKTEVPKCKNELSKFAPRL---ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND------EGIITIAS 663 (755)
Q Consensus 593 ~~~~I~~~~~~~l~~~r~~~~~~~P~~---~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~------~G~v~i~~ 663 (755)
+...|.+.+.+...........|.|+. ..+.||+++++.+||++|++|+.|+++||++|.+.+ ++.+.|+.
T Consensus 63 A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G 142 (164)
T 2jvz_A 63 ACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG 142 (164)
T ss_dssp HHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEES
T ss_pred HHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEc
Confidence 345566666655433333334455542 567899999999999999999999999999999974 68899998
Q ss_pred cChhhhHHHHHHHHHhhhcccCC
Q psy3754 664 FNSVSGQEAKRRIEKLTESVQIG 686 (755)
Q Consensus 664 ~~~~~~~~a~~~i~~~~~~~~~G 686 (755)
. .+.++.|..++..++.+++.|
T Consensus 143 ~-~~~v~~A~~~I~~~i~~~~~g 164 (164)
T 2jvz_A 143 P-PDRCEHAARIINDLLQSLRSG 164 (164)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHCC
T ss_pred C-HHHHHHHHHHHHHHHhhhhCC
Confidence 7 788999999999998888765
No 121
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.13 E-value=6e-07 Score=75.73 Aligned_cols=63 Identities=24% Similarity=0.288 Sum_probs=56.3
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecC------ceeEEEEecChhhhHHHHHHHHHhhh
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND------EGIITIASFNSVSGQEAKRRIEKLTE 681 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~------~G~v~i~~~~~~~~~~a~~~i~~~~~ 681 (755)
....+.||+++++.+||+||++|+.|+++||++|++++ ++.+.|+.. .+.++.|..++..++.
T Consensus 5 ~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 5 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHT
T ss_pred eEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999999999976 799999987 8889999999887664
No 122
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.12 E-value=6.8e-07 Score=76.55 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=55.5
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecC------ceeEEEEecChhhhHHHHHHHHHhhh
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND------EGIITIASFNSVSGQEAKRRIEKLTE 681 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~------~G~v~i~~~~~~~~~~a~~~i~~~~~ 681 (755)
....+.||+++++.+||+||++|+.|+++||++|++++ ++.|.|+... +.++.|..++..++.
T Consensus 6 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~-~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 6 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSA-ASISLAQYLINARLS 74 (82)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-HHHHHHHHHHHHHTC
T ss_pred EEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCH-HHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999975 6789999875 888999999887764
No 123
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.10 E-value=1.1e-06 Score=77.11 Aligned_cols=67 Identities=24% Similarity=0.358 Sum_probs=59.1
Q ss_pred CceeEEeeCCcccceeeccccceeeeeccccceEEeecCc------eeEEEEecChhhhHHHHHHHHHhhhccc
Q psy3754 617 PRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE------GIITIASFNSVSGQEAKRRIEKLTESVQ 684 (755)
Q Consensus 617 P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~------G~v~i~~~~~~~~~~a~~~i~~~~~~~~ 684 (755)
+....+.||+++++.+||++|++|+.|+++||++|+++++ +.|.|+.. .+.+++|+++|..++.+.+
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcc
Confidence 4567889999999999999999999999999999999753 58999987 7889999999998887654
No 124
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.09 E-value=1.7e-06 Score=74.11 Aligned_cols=65 Identities=26% Similarity=0.392 Sum_probs=56.6
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecCc------eeEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE------GIITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~------G~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
....+.||+++++.+||++|++|+.|+++||++|+++++ +.+.|+.. .+.+++|++++..++.++
T Consensus 7 ~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 7 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp EEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 445788999999999999999999999999999999753 68999985 788999999998877654
No 125
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.07 E-value=1.8e-06 Score=77.73 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=56.8
Q ss_pred eeEEeeCCcccceeeccccceeeeeccccceEEeecCc---------eeEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE---------GIITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~---------G~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
...+.||.++++.+||++|++||.|+++||++|+|+++ +.|.|+. +.+.+++|+++|..++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999753 7899988 7889999999998887654
No 126
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.04 E-value=1.8e-06 Score=72.70 Aligned_cols=61 Identities=26% Similarity=0.429 Sum_probs=53.4
Q ss_pred eeEEeeCCcccceeeccccceeeeeccccceEEeecCc---------eeEEEEecChhhhHHHHHHHHHhh
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE---------GIITIASFNSVSGQEAKRRIEKLT 680 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~---------G~v~i~~~~~~~~~~a~~~i~~~~ 680 (755)
...+.||+++++.+||+||++|+.|+++||++|+++++ +.|.|+.. ...++.|..++..++
T Consensus 4 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 4 LVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRV 73 (76)
T ss_dssp EEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHC
T ss_pred EEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999753 68999887 778899999887764
No 127
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=97.99 E-value=1.5e-06 Score=75.72 Aligned_cols=65 Identities=26% Similarity=0.408 Sum_probs=57.4
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecC------ceeEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND------EGIITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~------~G~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
....+.||+++++.+||++|++||.|+++||++|++++ ++.|.|+.. .+.+++|++++..++.++
T Consensus 14 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 34578899999999999999999999999999999975 588999987 788999999998877654
No 128
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.98 E-value=4.5e-06 Score=80.59 Aligned_cols=89 Identities=27% Similarity=0.334 Sum_probs=68.9
Q ss_pred HhhhHHHHHHHHhh-ccccccccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeecCce--------eEEE
Q psy3754 591 KKGLSYILEKMKTE-VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG--------IITI 661 (755)
Q Consensus 591 ~~~~~~I~~~~~~~-l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G--------~v~i 661 (755)
..+...|++.+.+. ...+.. -.+....+.||+++++.+||+||++|+.|+++||+.|++.+++ .+.|
T Consensus 61 ~~A~~~I~~~~~e~~~~~~~~----~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I 136 (163)
T 3krm_A 61 FKAQGRIYGKLKEENFFGPKE----EVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKI 136 (163)
T ss_dssp HHHHHHHHHHHHHTTSSCSSC----CCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEE
T ss_pred HHHHHHHHHHHhccccccccc----CCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEE
Confidence 33455677776655 333322 1233446889999999999999999999999999999998766 7899
Q ss_pred EecChhhhHHHHHHHHHhhhccc
Q psy3754 662 ASFNSVSGQEAKRRIEKLTESVQ 684 (755)
Q Consensus 662 ~~~~~~~~~~a~~~i~~~~~~~~ 684 (755)
+. +...++.|+.++..++.+++
T Consensus 137 ~G-~~~~v~~A~~~I~~~i~~~~ 158 (163)
T 3krm_A 137 IG-HFYASQMAQRKIRDILAQVK 158 (163)
T ss_dssp EE-CHHHHHHHHHHHHHHHHHHT
T ss_pred Ee-CHHHHHHHHHHHHHHHHHHH
Confidence 98 67889999999998887664
No 129
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=97.90 E-value=2.8e-06 Score=73.56 Aligned_cols=63 Identities=27% Similarity=0.413 Sum_probs=55.0
Q ss_pred eeEEeeCCcccceeeccccceeeeeccccceEEeecCc---------eeEEEEecChhhhHHHHHHHHHhhhc
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE---------GIITIASFNSVSGQEAKRRIEKLTES 682 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~---------G~v~i~~~~~~~~~~a~~~i~~~~~~ 682 (755)
...+.||+++++.+||+||++|+.|+++||++|+++++ +.|.|+.. .+.++.|..++..++.+
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTY 75 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999753 58999887 78899999999877654
No 130
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.81 E-value=1.2e-05 Score=77.46 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=68.1
Q ss_pred hHHHHHHHHhhcccccc--ccccCCCceeEEeeCCcccceeeccccceeeeeccccceEEeecC-------ceeEEEEec
Q psy3754 594 LSYILEKMKTEVPKCKN--ELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND-------EGIITIASF 664 (755)
Q Consensus 594 ~~~I~~~~~~~l~~~r~--~~~~~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~-------~G~v~i~~~ 664 (755)
...|.+.+.+.+..++. ......|....+.||+++++.+||+||++|+.|+++||+.|++.+ ++.|.|+.
T Consensus 63 ~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G- 141 (160)
T 2jzx_A 63 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG- 141 (160)
T ss_dssp HHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-
T ss_pred HHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-
Confidence 44555555555443322 123456788889999999999999999999999999999999863 68899998
Q ss_pred ChhhhHHHHHHHHHhhhc
Q psy3754 665 NSVSGQEAKRRIEKLTES 682 (755)
Q Consensus 665 ~~~~~~~a~~~i~~~~~~ 682 (755)
..+.++.|.+++.+++.+
T Consensus 142 ~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 142 IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 678899999988776543
No 131
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.75 E-value=2.9e-05 Score=83.65 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=57.2
Q ss_pred Hhhhccc--CCcEEEEEEEE----EEeeeEEEEEcC---CeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCC--
Q psy3754 678 KLTESVQ--IGKVYTGIVLR----LFDFGAIIRILS---GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDR-- 746 (755)
Q Consensus 678 ~~~~~~~--~G~~~~G~V~~----I~~fG~FVel~~---g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~-- 746 (755)
.++.+|+ +|+++.|+|.+ +.++++||+|.. +.+|+||.+|+. |.+.|++||+|+|.|++++..
T Consensus 121 ~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~k 194 (366)
T 1k0r_A 121 RTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAR 194 (366)
T ss_dssp ------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSS
T ss_pred HHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCC
Confidence 3345555 99999999999 999999999965 499999999985 468899999999999999872
Q ss_pred -CcEEEEEe
Q psy3754 747 -GRIKLSMI 754 (755)
Q Consensus 747 -gki~LS~k 754 (755)
.+|.||+.
T Consensus 195 gpqI~LSRT 203 (366)
T 1k0r_A 195 EPLITLSRT 203 (366)
T ss_dssp SCEEEEESS
T ss_pred ccEEEEEeC
Confidence 47888864
No 132
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=1.3e-05 Score=68.74 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=50.8
Q ss_pred eeEEeeCCcccceeeccccceeeeeccccceEEeec--Ccee-EEEEecChhhhHHHHHHHHHhh
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN--DEGI-ITIASFNSVSGQEAKRRIEKLT 680 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~--~~G~-v~i~~~~~~~~~~a~~~i~~~~ 680 (755)
...+.||.++++.+||+||++||.|+++||++|.+. +++. +.+.. ..+.+++|+++|..+.
T Consensus 11 ~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG-~~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 11 TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTG-MPENVDRAREEIEAHI 74 (83)
T ss_dssp EEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEE-CTTTHHHHHHHHHHHH
T ss_pred EEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEc-CHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999996 4454 55554 4588999999998754
No 133
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.42 E-value=0.00017 Score=73.68 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=57.9
Q ss_pred ccCCcEEEEEEEE----EEeeeEEEEEcC---CeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC---CCcEEEE
Q psy3754 683 VQIGKVYTGIVLR----LFDFGAIIRILS---GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD---RGRIKLS 752 (755)
Q Consensus 683 ~~~G~~~~G~V~~----I~~fG~FVel~~---g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~---~gki~LS 752 (755)
-++|++++|+|.+ +.+-.+||+|.. +.+|+||.+|+. |.+.|++||+|+|.|++++. .++|.||
T Consensus 5 ~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLS 78 (251)
T 2asb_A 5 TREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLS 78 (251)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEE
Confidence 3689999999999 788889999965 599999999975 56889999999999999986 2689999
Q ss_pred Ee
Q psy3754 753 MI 754 (755)
Q Consensus 753 ~k 754 (755)
+.
T Consensus 79 Rt 80 (251)
T 2asb_A 79 RT 80 (251)
T ss_dssp SS
T ss_pred ec
Confidence 75
No 134
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.40 E-value=0.00022 Score=75.00 Aligned_cols=71 Identities=7% Similarity=-0.086 Sum_probs=63.8
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCcEEEEE
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gki~LS~ 753 (755)
.|++||+|.|+|+++....+.|+|.....|+||++++. ...++....|++||.|.++|++++.++.+.||+
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 47999999999999999999999998899999999886 335667788999999999999998878889986
No 135
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.34 E-value=4.9e-05 Score=73.01 Aligned_cols=66 Identities=26% Similarity=0.366 Sum_probs=56.1
Q ss_pred CCCceeEEeeCCcccceeeccccceeeeeccccceEEeecCce----eEEEEecChhhhHHHHHHHHHhhh
Q psy3754 615 FAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG----IITIASFNSVSGQEAKRRIEKLTE 681 (755)
Q Consensus 615 ~~P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G----~v~i~~~~~~~~~~a~~~i~~~~~ 681 (755)
..|....+.||+++++.+||+||++|+.|+++||++|++.++| .+.|+.. ...+.+|+.++...+.
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLE 71 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHH
Confidence 3577788999999999999999999999999999999997655 7888887 6777888887765553
No 136
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.27 E-value=0.00011 Score=68.97 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=48.2
Q ss_pred cccceeeccccceeeeeccccceEEeecCce------------------------eEEEEecChh-----hhHHHHHHHH
Q psy3754 627 SKIRDVIGKGGSTIRTLTEETGTQIDINDEG------------------------IITIASFNSV-----SGQEAKRRIE 677 (755)
Q Consensus 627 ~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G------------------------~v~i~~~~~~-----~~~~a~~~i~ 677 (755)
..++.+|||+|.++|.|+++||++|.|..+| .|.|++.+.. .+++|.+.|+
T Consensus 17 NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~ 96 (140)
T 2bl5_A 17 NFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVK 96 (140)
T ss_dssp CHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHH
T ss_pred CeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHH
Confidence 3488999999999999999999999997666 6778887764 6888999988
Q ss_pred Hhhhccc
Q psy3754 678 KLTESVQ 684 (755)
Q Consensus 678 ~~~~~~~ 684 (755)
.++..+.
T Consensus 97 ~lL~p~~ 103 (140)
T 2bl5_A 97 KLLVPAA 103 (140)
T ss_dssp HHSSCCS
T ss_pred HHCCCCC
Confidence 8775443
No 137
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.27 E-value=0.00016 Score=69.56 Aligned_cols=65 Identities=26% Similarity=0.354 Sum_probs=55.4
Q ss_pred eeEEeeCCcccceeeccccceeeeeccccceEEeecCc--------eeEEEEecChhhhHHHHHHHHHhhhccc
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE--------GIITIASFNSVSGQEAKRRIEKLTESVQ 684 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~--------G~v~i~~~~~~~~~~a~~~i~~~~~~~~ 684 (755)
+..+.||+++++.+||++|++||.|+++||+.|++..+ ..+.|+. +...++.|...+..++.+..
T Consensus 3 ~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 3 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTCSS
T ss_pred EEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999999999998643 3788887 56788999999988877654
No 138
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.23 E-value=0.00011 Score=70.69 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=54.6
Q ss_pred CceeEEeeCCcccceeeccccceeeeeccccceEEeecCce-------eEEEEecChhhhHHHHHHHHHhhhc
Q psy3754 617 PRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG-------IITIASFNSVSGQEAKRRIEKLTES 682 (755)
Q Consensus 617 P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G-------~v~i~~~~~~~~~~a~~~i~~~~~~ 682 (755)
|....+.||+++++.+||+||++|+.|+++||+.|++.+++ .+.|+. ....+..|...+..++.+
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e 73 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRIYGKLKE 73 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 55677889999999999999999999999999999997654 488888 567778888887666644
No 139
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.13 E-value=0.00034 Score=68.11 Aligned_cols=60 Identities=25% Similarity=0.452 Sum_probs=52.4
Q ss_pred eeEEeeCCcccceeeccccceeeeeccccceEEeecCc---------eeEEEEecChhhhHHHHHHHHHh
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE---------GIITIASFNSVSGQEAKRRIEKL 679 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~---------G~v~i~~~~~~~~~~a~~~i~~~ 679 (755)
...+.||+++++.+||++|++||.|+++||++|++.++ +.|.|+. +.+.++.|+.++.++
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEK 173 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHh
Confidence 55788999999999999999999999999999999643 7899988 678889999888764
No 140
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.11 E-value=0.00024 Score=69.47 Aligned_cols=64 Identities=20% Similarity=0.392 Sum_probs=54.6
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEeecCc--------eeEEEEecChhhhHHHHHHHHHhhhc
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE--------GIITIASFNSVSGQEAKRRIEKLTES 682 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~--------G~v~i~~~~~~~~~~a~~~i~~~~~~ 682 (755)
....+.||+++++.+||+||++||.|+++||++|.+.++ +.|.|+... ..+++|..++..++.+
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~-~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEP-EQNRKAVELIIQKIQE 175 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSH-HHHHHHHHHHHHHHHS
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCH-HHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999643 688998775 7888899888776653
No 141
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=96.82 E-value=0.00029 Score=68.56 Aligned_cols=64 Identities=28% Similarity=0.407 Sum_probs=54.9
Q ss_pred eEEeeCCcccceeeccccceeeeeccccceEEeecC-c-----eeEEEEecChhhhHHHHHHHHHhhhccc
Q psy3754 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND-E-----GIITIASFNSVSGQEAKRRIEKLTESVQ 684 (755)
Q Consensus 620 ~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~-~-----G~v~i~~~~~~~~~~a~~~i~~~~~~~~ 684 (755)
..+.||+++++.+||++|++||.|+++||++|++.+ + ..+.|+.. .+.+++|.+++..++.+.+
T Consensus 5 ~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 5 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSVQ 74 (174)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999999999999963 3 47888877 6788999999988877654
No 142
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=96.69 E-value=0.0026 Score=56.40 Aligned_cols=60 Identities=28% Similarity=0.282 Sum_probs=45.7
Q ss_pred ccCCcEEEEEEEEE---EeeeEEEEEcC-CeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC
Q psy3754 683 VQIGKVYTGIVLRL---FDFGAIIRILS-GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD 745 (755)
Q Consensus 683 ~~~G~~~~G~V~~I---~~fG~FVel~~-g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~ 745 (755)
.+.++.++|+|+.. +.|| |+.-.. +.++|+|+|+|.+..+ +.+.+++||.|+..|..+++
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~--~~~~l~~Ge~V~g~V~~i~~ 74 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA--VRGNPQQGDRVEGKIKSITD 74 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC--CCCCCCTTCEEEEEEEECCS
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc--cccCCCCCCEEEEEEEEeCC
Confidence 34678899999998 7899 887654 5999999999998754 12458999999999999865
No 143
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=96.63 E-value=0.00053 Score=66.96 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=52.8
Q ss_pred eEEeeCCcccceeeccccceeeeeccccceEEeecCce---------eEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG---------IITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 620 ~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G---------~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
..+.||.++++.+||+||++|+.|+++||++|++.+++ .+.|+.. .+.+.+|..++..++.+.
T Consensus 8 ~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIREM 79 (178)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTCC
T ss_pred EEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999997543 5777765 667888888888777654
No 144
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=96.17 E-value=9.4e-06 Score=79.94 Aligned_cols=92 Identities=13% Similarity=0.180 Sum_probs=58.0
Q ss_pred ccceeeccccceeeeeccccceEEeec----CceeEEEEecChhhhHHHHHH----------------------------
Q psy3754 628 KIRDVIGKGGSTIRTLTEETGTQIDIN----DEGIITIASFNSVSGQEAKRR---------------------------- 675 (755)
Q Consensus 628 ki~~~IG~gGk~ik~i~~~~g~~I~i~----~~G~v~i~~~~~~~~~~a~~~---------------------------- 675 (755)
++++++ .| +|..| ..||++++++ -+|.+|++..++.......+.
T Consensus 14 ~~G~iv--~G-~V~~I-~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~ 89 (182)
T 1kl9_A 14 EVEDVV--MV-NVRSI-AEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRV 89 (182)
T ss_dssp CTTCEE--EE-EEEEE-CSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCEE--EE-EEEEE-eccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 345544 33 35566 4899999993 489999998877655444332
Q ss_pred ----HHHhhhcccCCcEEEEEEEEEEe-eeEEEEEcCCeeEEEeccccCcc-cccC
Q psy3754 676 ----IEKLTESVQIGKVYTGIVLRLFD-FGAIIRILSGKDGLLHISQISSK-RVNI 725 (755)
Q Consensus 676 ----i~~~~~~~~~G~~~~G~V~~I~~-fG~FVel~~g~~Gllhisel~~~-~~~~ 725 (755)
+......++.|+.+.|+|+++++ || |+|.+|++||+|+|+++|. ++.+
T Consensus 90 ~~~p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~~~~~~ 143 (182)
T 1kl9_A 90 SPEEAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFDDKYKR 143 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHHHHHTC
T ss_pred CcChHHHHHHhccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchhhhcCC
Confidence 23334556777777777777776 88 7777789999999988775 3555
No 145
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=95.97 E-value=0.017 Score=64.98 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=48.3
Q ss_pred cccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEE
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSM 753 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~ 753 (755)
.-++|+.|+|.|++ +. +.+|+||++++..+ .+....|++||.|+|+|.++|. +++|.+..
T Consensus 400 ~~~~g~~f~g~vv~---------l~-~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 400 AAQPERVWDAVVVD---------RR-GAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp HTCTTCCEEEEEEE---------EE-TTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred HhCCCCEEEEEEEE---------Ee-CcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 34789999998754 32 45899999999876 2334579999999999999998 89998865
No 146
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.86 E-value=0.0043 Score=55.10 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=54.4
Q ss_pred ceeEEeeCCcccceeeccccceeeeecccc-ceEEeec-CceeEEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEET-GTQIDIN-DEGIITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~-g~~I~i~-~~G~v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
....+.||+..-+.+||++|.+||.|++++ ++.|.+- .++.|.|..+ ...+++|...++.++.++
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~-~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGP-TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEECC-HHHHHHHHHHHHHHHHHH
Confidence 446778899999999999999999999975 8999985 5667899888 778899999887777554
No 147
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=94.38 E-value=0.015 Score=54.74 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=50.2
Q ss_pred eEEeeCCcccceeeccccceeeeeccccce-EEeec--Cc-------ee--EEEEecChhhhHHHHHHHHHhhhcc
Q psy3754 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGT-QIDIN--DE-------GI--ITIASFNSVSGQEAKRRIEKLTESV 683 (755)
Q Consensus 620 ~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~-~I~i~--~~-------G~--v~i~~~~~~~~~~a~~~i~~~~~~~ 683 (755)
..+.+|++..+.+||++|.+||.+.+.||+ .|++. ++ +. +.|... .+..+.|+.+++..+..+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~-~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT-KDSIANATVLLDYHLNYL 143 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE-HHHHHHHHHHHHHHHHTC
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 557899999999999999999999999996 88884 11 22 556654 568888999988777654
No 148
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=94.18 E-value=0.018 Score=56.82 Aligned_cols=64 Identities=23% Similarity=0.465 Sum_probs=54.1
Q ss_pred CceeEEeeCCcccceeeccccceeeeeccccceEEeec-CceeEEEEec----ChhhhHHHHHHHHHhhh
Q psy3754 617 PRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN-DEGIITIASF----NSVSGQEAKRRIEKLTE 681 (755)
Q Consensus 617 P~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~-~~G~v~i~~~----~~~~~~~a~~~i~~~~~ 681 (755)
|+ ..+.||++.++-+||++|.+++.|++.+|+.|+++ .+|.+.+... +...+.+|+++++.+..
T Consensus 4 ~~-~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 4 PR-IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CC-EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred cc-eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 45 35789999999999999999999999999999998 6899988733 44678899999977664
No 149
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=90.98 E-value=0.17 Score=54.83 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=59.6
Q ss_pred HHHhhhHHHHHHHHhhccccccccccCCCceeEEeeCCcccceeeccccc--eeeeeccccceEEeecC--c--------
Q psy3754 589 KAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGS--TIRTLTEETGTQIDIND--E-------- 656 (755)
Q Consensus 589 ~A~~~~~~I~~~~~~~l~~~r~~~~~~~P~~~~~~i~~~ki~~~IG~gGk--~ik~i~~~~g~~I~i~~--~-------- 656 (755)
.++++...+++.+.+. +.+.--+....+.|++.....+||++|. .|+.|.++||+.|.+=+ +
T Consensus 163 ~akeA~~~Ll~~l~~~------e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~ 236 (376)
T 3n89_A 163 ELIEAAKRLNEILFRE------SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNI 236 (376)
T ss_dssp HHHHHHHHHHHHHCC--------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCE
T ss_pred HHHHHHHHHHHHHHhh------hcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCc
Confidence 3555566666666443 2223334566788999999999999994 45999999999999732 1
Q ss_pred eeEEEEecChhhhHHHHHHHHHhh
Q psy3754 657 GIITIASFNSVSGQEAKRRIEKLT 680 (755)
Q Consensus 657 G~v~i~~~~~~~~~~a~~~i~~~~ 680 (755)
-.+.|.. ..+.+.+|++.+.+++
T Consensus 237 ~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 237 YEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEES-CHHHHHHHHHHHHHTS
T ss_pred eEEEEEe-CHHHHHHHHHHHHhhC
Confidence 2466666 4678899999988766
No 150
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=90.31 E-value=0.13 Score=48.05 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhhhhhhhhcc
Q psy3754 30 ALLTSRINDLNIHFKLHIKDHHSRRGLIMMKGNF 63 (755)
Q Consensus 30 a~lt~~I~~l~~h~~~~~kd~~~~~~l~~~v~~r 63 (755)
-.|-.|..+|+.|++.|+||+||+++|.-.-++.
T Consensus 89 ~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI 122 (151)
T 3u5c_N 89 YYLIKKAVSVRKHLERNRKDKDAKFRLILIESRI 122 (151)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 3577899999999999999999999998877664
No 151
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=90.04 E-value=0.12 Score=52.09 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=42.8
Q ss_pred ccceeeccccceeeeeccccceEEeecCceeEEEEecChhhhHHHHHHHHHhhhc
Q psy3754 628 KIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTES 682 (755)
Q Consensus 628 ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~~~~a~~~i~~~~~~ 682 (755)
.++.+||++|++++.|++.||+.|.+.+ ..++|... .+.++.|++.+..++..
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~-~~v~i~G~-~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG-KTVAIIGN-PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET-TEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC-eEEEEEeC-HHHHHHHHHHHHHHHcC
Confidence 4677999999999999999999999865 45777765 56678898888777643
No 152
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=89.87 E-value=0.46 Score=47.59 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=52.2
Q ss_pred hhhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccccCcc------------cccCCCCEEEEEEEEEcCC
Q psy3754 679 LTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT------------DFLKENQKVRVKVLGIDDR 746 (755)
Q Consensus 679 ~~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~~~~~------------~~~kvGd~V~VkV~~id~~ 746 (755)
++..|.+|++++|+|+.+.+-|+.+-+.+-.+.+|+...|..++.-++. +.-++|++|+.||.+++.+
T Consensus 123 iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~ 202 (214)
T 2rf4_A 123 YVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTT 202 (214)
T ss_dssp EEECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECC
T ss_pred EEEecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEec
Confidence 4567999999999999999977666557778889999988544211111 1124799999999999875
Q ss_pred Cc
Q psy3754 747 GR 748 (755)
Q Consensus 747 gk 748 (755)
|.
T Consensus 203 ~~ 204 (214)
T 2rf4_A 203 GR 204 (214)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 153
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=89.52 E-value=0.99 Score=39.82 Aligned_cols=60 Identities=10% Similarity=0.006 Sum_probs=51.1
Q ss_pred hhcccCCcEEEEEEEEEEeeeEEEEEcCCeeEEEeccccCcccc-----cC-cccccCCCCEEEEE
Q psy3754 680 TESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV-----NI-ITDFLKENQKVRVK 739 (755)
Q Consensus 680 ~~~~~~G~~~~G~V~~I~~fG~FVel~~g~~Gllhisel~~~~~-----~~-~~~~~kvGd~V~Vk 739 (755)
...+..|+.+-+.|+++.+.++-|.+.++..+-|+.+.+.|.+- .+ +.+.+++||.|.|+
T Consensus 28 ~~~~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 28 QDIGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTSCTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred hccCccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 34456799999999999999999998888888899999999752 34 67789999999998
No 154
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=87.82 E-value=0.24 Score=53.62 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=46.8
Q ss_pred EEeeCCcccceeecccc--ceeeeeccccceEEeecCce-----------eEEEEecChhhhHHHHHHHHHh
Q psy3754 621 TIKIDPSKIRDVIGKGG--STIRTLTEETGTQIDINDEG-----------IITIASFNSVSGQEAKRRIEKL 679 (755)
Q Consensus 621 ~~~i~~~ki~~~IG~gG--k~ik~i~~~~g~~I~i~~~G-----------~v~i~~~~~~~~~~a~~~i~~~ 679 (755)
.+.|++.--+-+||+|| .+|+.|.++||+.|.+-+.+ .|.|+.. .+.+++|++.+.++
T Consensus 33 ~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~l 103 (376)
T 3n89_A 33 NMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRRN 103 (376)
T ss_dssp EEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHHS
T ss_pred EEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHhc
Confidence 46677777888999999 99999999999999984322 3888776 56788899988764
No 155
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=87.74 E-value=0.27 Score=46.17 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=41.1
Q ss_pred eeEEeeCCcccceeeccccceeeeeccccceEE-eec-CceeEEEEecChhhhHHHHH
Q psy3754 619 LITIKIDPSKIRDVIGKGGSTIRTLTEETGTQI-DIN-DEGIITIASFNSVSGQEAKR 674 (755)
Q Consensus 619 ~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I-~i~-~~G~v~i~~~~~~~~~~a~~ 674 (755)
.+.+.||.+.++.+||++|.+|+.|++++|+.+ ... +...+.+.+.....+..++.
T Consensus 5 ~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~~~~p~~v~~~~~ 62 (144)
T 2qnd_A 5 HEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARS 62 (144)
T ss_dssp EEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCCCchheeeccCCHHHHHHHHH
Confidence 456789999999999999999999999999432 122 34456666666666655544
No 156
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=87.23 E-value=0.2 Score=49.33 Aligned_cols=52 Identities=33% Similarity=0.397 Sum_probs=42.5
Q ss_pred ccceeeccccceeeeeccccceEEeecCceeEEEEecChhhhHHHHHHHHHhhh
Q psy3754 628 KIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTE 681 (755)
Q Consensus 628 ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~~~~a~~~i~~~~~ 681 (755)
.++.+||++|++++.|++-||+.|.+.++ .+++.+. .+.++.|+..+..++.
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-~v~i~G~-~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY-EVAIIGD-YERAMAAKQAIEMLAE 159 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS-EEEEEEE-HHHHHHHHHHHHHHHT
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC-EEEEEeC-hHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999766 6777654 5566888888877664
No 157
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=85.46 E-value=0.66 Score=38.94 Aligned_cols=63 Identities=24% Similarity=0.206 Sum_probs=45.8
Q ss_pred cEEEEEEEEEEeeeEE-EEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEE
Q psy3754 687 KVYTGIVLRLFDFGAI-IRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSM 753 (755)
Q Consensus 687 ~~~~G~V~~I~~fG~F-Vel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~ 753 (755)
-.++|+|++..+.|.| |++.+|..=+.|++=- ++.-.-.+-+||.|.|.+..-|. +|+|....
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK----~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R~ 78 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGK----MRQHYIRILPEDRVVVELSPYDLSRGRIVYRY 78 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECHH----HHHTTCCCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcc----eecCCccCCCCCEEEEEECccCCCcEEEEEEc
Confidence 4579999999988865 8888887888888732 22111227899999998876665 68877643
No 158
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=83.00 E-value=0.59 Score=43.70 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhhhhhhhh
Q psy3754 30 ALLTSRINDLNIHFKLHIKDHHSRRGLIMMKG 61 (755)
Q Consensus 30 a~lt~~I~~l~~h~~~~~kd~~~~~~l~~~v~ 61 (755)
-.|-.|--++..|++.|+||.+|+++|.-.-+
T Consensus 91 ~~LikKAv~lRkHLe~n~kD~~sK~~L~LiES 122 (153)
T 2xzm_O 91 YFLIKKALSIRKHLEKNRKDKDSKYRLILVES 122 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHH
Confidence 34566778899999999999999999975544
No 159
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=81.29 E-value=4.5 Score=33.72 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=43.0
Q ss_pred CcEEEEEEEEEE---eeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCc
Q psy3754 686 GKVYTGIVLRLF---DFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGR 748 (755)
Q Consensus 686 G~~~~G~V~~I~---~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gk 748 (755)
...+.|+|+... .||....-.++.+-|+|+|.|.......--+.++.||.|...+.. +++|+
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~-~~kG~ 70 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE-GEKGA 70 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE-CSSSE
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE-CCCCc
Confidence 456889999984 477665434469999999999754111112458899999998865 33554
No 160
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=81.28 E-value=4 Score=33.64 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=37.7
Q ss_pred EEEEEEEE---EeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCC
Q psy3754 689 YTGIVLRL---FDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRG 747 (755)
Q Consensus 689 ~~G~V~~I---~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~g 747 (755)
..|+|+.. +.||..-.-.++-+ |+|+|.|.... .++.||.|...+.. +++|
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~-g~kG 56 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFEPTT-NNKG 56 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEEEEE-CSSS
T ss_pred cceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC------CCCCCCEEEEEEEe-CCCC
Confidence 57999998 45776554344577 99999997543 58999999999875 3355
No 161
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.08 E-value=1.1 Score=40.43 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=42.8
Q ss_pred ccceeeccccceeeeeccccceEEeecC---ceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 628 KIRDVIGKGGSTIRTLTEETGTQIDIND---EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 628 ki~~~IG~gGk~ik~i~~~~g~~I~i~~---~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
++++++ .| +|..| ..||++|+++. +|.+|++...+...+ ..-..+++|+.+..+|.++..
T Consensus 21 ~vG~iv--~G-~V~~I-~~fGaFV~l~g~~~~Glvhisel~~~~~~-------~~~~~~~~Gd~V~VkV~~vd~ 83 (119)
T 2cqo_A 21 ALYTIF--QG-EVAMV-TDYGAFIKIPGCRKQGLVHRTHMSSCRVD-------KPSEIVDVGDKVWVKLIGREM 83 (119)
T ss_dssp CTTCEE--EE-EEEEE-ETTEEEEECTTCSSCEEEEHHHHCSSCCS-------CHHHHCCTTCEEEEEEEEEEE
T ss_pred CCCCEE--EE-EEEEE-eCceEEEEECCCcEEEEEEHHHCCccccc-------ChhhcCCCCCEEEEEEEEEec
Confidence 344444 23 35566 47999999953 999999987765432 223348999999999999965
No 162
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=79.38 E-value=4.8 Score=32.79 Aligned_cols=55 Identities=27% Similarity=0.330 Sum_probs=39.3
Q ss_pred EEEEEEEEEE---eeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCC
Q psy3754 688 VYTGIVLRLF---DFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRG 747 (755)
Q Consensus 688 ~~~G~V~~I~---~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~g 747 (755)
...|+|+... .||....-.++.+-|+|+|.+..... +.++.||.|...+..-+ +|
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~~-kG 62 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGF----KTLAEGQRVEFEITNGA-KG 62 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSC----CCCCTTCEEEEEEEEET-TE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccC----cCCCCCCEEEEEEEECC-CC
Confidence 4689999984 47754432334899999999975432 34889999999887643 44
No 163
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=78.97 E-value=1.7 Score=37.02 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=42.0
Q ss_pred ccceeeccccceeeeeccccceEEeec----CceeEEEE-ecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 628 KIRDVIGKGGSTIRTLTEETGTQIDIN----DEGIITIA-SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 628 ki~~~IG~gGk~ik~i~~~~g~~I~i~----~~G~v~i~-~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
++++++ .| +|. +.+||++++++ -+|.+|++ ..++.......+ .+ +|+.++.+|.++.+
T Consensus 10 ~vG~~~--~G-~V~--v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~-------~~-~Gd~V~VkV~~vd~ 72 (88)
T 1luz_A 10 NAGDVI--KG-RVY--EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRD-------KL-VGKTVKVKVIRVDY 72 (88)
T ss_dssp CTTCEE--EE-EEE--EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHH-------HH-TTCEEEEEEEEEET
T ss_pred CCCCEE--EE-EEE--EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhH-------Ee-CCCEEEEEEEEEEC
Confidence 455555 34 355 56999999994 58999999 887665443322 24 89999999999854
No 164
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=77.47 E-value=6.7 Score=33.52 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=42.7
Q ss_pred ccCCcEEEEEEEEEE-eeeEEEEEcC-CeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCc
Q psy3754 683 VQIGKVYTGIVLRLF-DFGAIIRILS-GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGR 748 (755)
Q Consensus 683 ~~~G~~~~G~V~~I~-~fG~FVel~~-g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gk 748 (755)
+.......|+|+... .|| |+.-.. +.+-|+|+|.|... .+.++.||.|...+..-+..||
T Consensus 13 ~s~~~~~~G~Vkwf~KGfG-FI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~k~Gk 74 (89)
T 1wfq_A 13 TSAALRETGVIEKLLTSYG-FIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSDRRTGK 74 (89)
T ss_dssp SSCCCEEEEEEEEECSSEE-EEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEECSSSCC
T ss_pred CCcccccceEEEEEeCCee-EEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEECCCCCC
Confidence 344567899999984 355 555454 49999999999754 2458999999999876332264
No 165
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=76.83 E-value=3.6 Score=37.64 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=40.6
Q ss_pred cCCcEEEEEEEEEEeeeEEEEEcCCe--eEEEeccccCcccccCcccccCCCCEEEEEEE
Q psy3754 684 QIGKVYTGIVLRLFDFGAIIRILSGK--DGLLHISQISSKRVNIITDFLKENQKVRVKVL 741 (755)
Q Consensus 684 ~~G~~~~G~V~~I~~fG~FVel~~g~--~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~ 741 (755)
+.|..|+|+|+.|.+-+++|.+.+.- +--+|.+++---.-......|.+||+|+|-.-
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSR 72 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEEC
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEec
Confidence 45999999999999999999987642 45677777632211122245999999999653
No 166
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=76.45 E-value=2.7 Score=35.86 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=40.2
Q ss_pred cCCcEEEEEEEEEE-eeeEEEEEcC-CeeEEEeccccCcccccCcccccCCCCEEEEEEEE
Q psy3754 684 QIGKVYTGIVLRLF-DFGAIIRILS-GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLG 742 (755)
Q Consensus 684 ~~G~~~~G~V~~I~-~fG~FVel~~-g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~ 742 (755)
..+....|+|+... .|| |+.-.+ +.+-|+|+|.|... .+.++.||.|...+..
T Consensus 14 ~~~~~~~G~Vk~f~kGfG-FI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFG-FIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLSK 68 (88)
T ss_dssp SSCCCEEEEEEEECSSEE-EEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCCC
T ss_pred CCCCceeEEEEEEECCcc-EEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEEE
Confidence 35788999999995 355 555444 58999999999755 2458999999987753
No 167
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.81 E-value=1.7 Score=38.06 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=41.8
Q ss_pred ccceeeccccceeeeeccccceEEeec-----CceeEEEEec-ChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 628 KIRDVIGKGGSTIRTLTEETGTQIDIN-----DEGIITIASF-NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 628 ki~~~IG~gGk~ik~i~~~~g~~I~i~-----~~G~v~i~~~-~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
++++++ .| +|..+ ..||++++++ .+|.+|++.. .+... +..-..+++|+.+..+|.++..
T Consensus 11 ~vG~i~--~G-~V~~v-~~fG~FV~l~~~~~~~~Glvhisel~~~~~~-------~~~~~~~~~Gd~V~VkV~~vd~ 76 (103)
T 2eqs_A 11 TIGDIY--NG-KVTSI-MQFGCFVQLEGLRKRWEGLVHISELRREGRV-------ANVADVVSKGQRVKVKVLSFTG 76 (103)
T ss_dssp CTTCEE--EE-EEEEE-CSSCEEEEECSSSSCCEEEECGGGTSSSSCC-------CCHHHHCCTTCEEEEEEEEEET
T ss_pred CCCCEE--EE-EEEEE-eccEEEEEEcCCCCCeEEEEEHHHCCCCccc-------CCcccEeCCCCEEEEEEEEEEC
Confidence 445544 33 35566 4799999996 3799999987 33322 1223348999999999999975
No 168
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=75.78 E-value=1.9 Score=35.74 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=37.9
Q ss_pred eeeeccccceEEeec--CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEee
Q psy3754 640 IRTLTEETGTQIDIN--DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDF 699 (755)
Q Consensus 640 ik~i~~~~g~~I~i~--~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~f 699 (755)
|..+ .++|++++++ -+|.++++...+... ..+++||.+.++|.++.+.
T Consensus 13 V~~v-~~~G~fV~l~~~~~Gllh~sel~~~~~-----------~~~~~Gd~V~v~V~~vd~~ 62 (80)
T 2k52_A 13 VTRI-EKYGAFINLNEQVRGLLRPRDMISLRL-----------ENLNVGDEIIVQAIDVRPE 62 (80)
T ss_dssp EEEE-ETTEEEEEEETTEEEEECGGGCSSCCG-----------GGCCTTCEEEEEEEEEETT
T ss_pred EEEE-eCCEEEEEECCCCEEEEEHHHCCcccc-----------eeeCCCCEEEEEEEEEECC
Confidence 5555 4799999997 489999988765432 5699999999999998753
No 169
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=74.14 E-value=14 Score=29.73 Aligned_cols=54 Identities=35% Similarity=0.417 Sum_probs=38.9
Q ss_pred EEEEEEE---EeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCc
Q psy3754 690 TGIVLRL---FDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGR 748 (755)
Q Consensus 690 ~G~V~~I---~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gk 748 (755)
.|+|+.. +.||....-.++.+-++|+|.+...-. +.++.||.|...+..- ++|+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~-~kG~ 59 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGF----KTLKEGQRVSFDVTTG-PKGK 59 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGG----SSCCTTCEEEEEEEEE-TTEE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCC----CCCCCCCEEEEEEEEC-CCCc
Confidence 6899888 347765542346999999999965422 3589999999998764 3554
No 170
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=72.35 E-value=1.8 Score=51.30 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=48.7
Q ss_pred eCCcccceeeccccceeeeeccccceEEeec--CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe--e
Q psy3754 624 IDPSKIRDVIGKGGSTIRTLTEETGTQIDIN--DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD--F 699 (755)
Q Consensus 624 i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~--~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~--f 699 (755)
+...++++++ .| +|+.+ ..||++|+++ .+|.||++..++...... -..+++|+.++.+|.+|.. .
T Consensus 649 ~~~l~vG~iv--~G-~V~~V-~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~-------~~~~~vGd~V~VkVi~VD~~~~ 717 (785)
T 3bzc_A 649 LKDLKPGMVL--EG-VVTNV-TNFGAFVDIGVHQDGLVHISALSEKFVKDP-------YEVVKAGDIVKVKVMEVDIPRN 717 (785)
T ss_dssp STTCCTTCBC--CC-EEEEE-ETTEEEEECSSSSEEEEETTTSCSSCCSCH-------HHHCCTTCCCCCBEEEEETTTT
T ss_pred hhhcCCCCEE--EE-EEEEE-ecCCeEEEeCCCcEEEEEHHHcCccccCCh-------hheeCCCCEEEEEEEEEECCCC
Confidence 3444555555 34 46666 4899999997 499999998876543322 2348999999999999965 4
Q ss_pred eEEEEE
Q psy3754 700 GAIIRI 705 (755)
Q Consensus 700 G~FVel 705 (755)
-+-+.+
T Consensus 718 rI~LSl 723 (785)
T 3bzc_A 718 RVGLSM 723 (785)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 444443
No 171
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=70.76 E-value=4.6 Score=35.07 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=38.5
Q ss_pred CCcEEEEEEEEEEeeeE-EEEEcC-CeeEEEeccccCcccccCcccccCCCCEEEEEEE
Q psy3754 685 IGKVYTGIVLRLFDFGA-IIRILS-GKDGLLHISQISSKRVNIITDFLKENQKVRVKVL 741 (755)
Q Consensus 685 ~G~~~~G~V~~I~~fG~-FVel~~-g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~ 741 (755)
......|+|+.. +-|. |+.-.+ +.+-|+|+|.|... .+.++.||.|...+.
T Consensus 15 ~~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CCcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 356789999998 4343 555444 48999999999765 245899999999884
No 172
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=69.81 E-value=14 Score=29.55 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=38.2
Q ss_pred EEEEEEEEE---eeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCC
Q psy3754 689 YTGIVLRLF---DFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRG 747 (755)
Q Consensus 689 ~~G~V~~I~---~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~g 747 (755)
..|+|+... .||.. .-.++.+-|+|+|.+..... +.++.||.|...+..- ++|
T Consensus 2 ~~G~Vk~fn~~kGfGFI-~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~-~kG 57 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFI-EVEGGSDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQG-NRG 57 (66)
T ss_dssp EEEEEEEEETTTTEEEE-EETTEEEEEEEGGGBCSSSC----CCCCTTCEEEEEEEEE-TTE
T ss_pred CceEEEEEECCCCeEEE-ecCCCccEEEEHHHccccCC----CCCCCCCEEEEEEEEC-CCC
Confidence 368999884 46654 44556899999999975432 3488999999988653 344
No 173
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=69.57 E-value=7.1 Score=36.58 Aligned_cols=53 Identities=30% Similarity=0.387 Sum_probs=40.8
Q ss_pred CCcEEEEEEEEE---EeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEE
Q psy3754 685 IGKVYTGIVLRL---FDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGI 743 (755)
Q Consensus 685 ~G~~~~G~V~~I---~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~i 743 (755)
.|..+.|+|+.. +.||+...-.++.+-|+|+|.|... ..++.||.|...+...
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred cCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 477899999998 4477665434459999999999633 2589999999988753
No 174
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=68.35 E-value=5.5 Score=31.92 Aligned_cols=53 Identities=28% Similarity=0.347 Sum_probs=37.9
Q ss_pred EEEEEEEEE---eeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCC
Q psy3754 689 YTGIVLRLF---DFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRG 747 (755)
Q Consensus 689 ~~G~V~~I~---~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~g 747 (755)
++|+|+... .||.. .-.++.+-++|+|.+...-. +.++.||.|...+.. +++|
T Consensus 1 m~G~Vk~fn~~kGfGFI-~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~-~~~G 56 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFI-TKDEGGDVFVHWSAIEMEGF----KTLKEGQVVEFEIQE-GKKG 56 (66)
T ss_dssp CCEEEEEEETTTTEEEE-EETTSCBCBBCSSSSCCSSC----CCCCSSSEEEEEEEC-SSSC
T ss_pred CcEEEEEEECCCCEEEE-ecCCCceEEEEhHHccccCC----CCCCCCCEEEEEEEE-CCCC
Confidence 368888884 46654 44667999999999975422 348899999988864 2344
No 175
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=67.08 E-value=11 Score=30.76 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=36.7
Q ss_pred EEEEEEEEE---eeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEE
Q psy3754 689 YTGIVLRLF---DFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGI 743 (755)
Q Consensus 689 ~~G~V~~I~---~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~i 743 (755)
..|+|+... .||.. .-.+|.+-|+|+|.|..... ..++.||.|...+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI-~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFI-EREGDTDVFVHYTAINAKGF----RTLNEGDIVTFDVEPG 54 (73)
T ss_dssp EEEEEEEEETTTTEEEE-ECTTSCCEEEEGGGBCSSSC----SSCCTTCEEEEEEECC
T ss_pred CCEEEEEEECCCCEEEE-ecCCCCcEEEEhhhccccCC----CCCCCCCEEEEEEEEC
Confidence 468999884 36654 44556899999999975432 3488999999988653
No 176
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=66.56 E-value=12 Score=34.91 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=48.3
Q ss_pred CcEEEEEEEEEEeeeEE-EEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEEEEE
Q psy3754 686 GKVYTGIVLRLFDFGAI-IRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIKLSM 753 (755)
Q Consensus 686 G~~~~G~V~~I~~fG~F-Vel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~LS~ 753 (755)
-..+.|+|+...+.+.| |++.+|..-|+|++- ++++ .--++.||.|.|.....|. +|+|..-.
T Consensus 30 ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~G----KmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~ 94 (143)
T 1d7q_A 30 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRG----KLRK-KVWINTSDIILVGLRDYQDNKADVILKY 94 (143)
T ss_dssp TTEEEEEEEEECSSSEEEEEETTTEEEEEECCS----GGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEE
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecc----ccee-eEEecCCCEEEEeeccCCCCeEEEEEEe
Confidence 34688999999999987 888999999999884 2232 3348899999998766555 78776644
No 177
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=65.39 E-value=15 Score=31.40 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=45.3
Q ss_pred hcccCCcEEEEEEEEEEeeeEEEEEc--CCeeEEEecc-ccCcccccCcccccCCCCEEEEEEEEEcCCCcEEE
Q psy3754 681 ESVQIGKVYTGIVLRLFDFGAIIRIL--SGKDGLLHIS-QISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKL 751 (755)
Q Consensus 681 ~~~~~G~~~~G~V~~I~~fG~FVel~--~g~~Gllhis-el~~~~~~~~~~~~kvGd~V~VkV~~id~~gki~L 751 (755)
.++-+|++.+|.|. +.++-++|.|. +|.++++--+ .+..++..+..+.+ +|-.|+|+|+.+|.- -|.+
T Consensus 28 ~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~l-YIDV 98 (102)
T 1jjg_A 28 MDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADGL-YVDL 98 (102)
T ss_dssp CCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECSS-EEEE
T ss_pred cccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEeccE-EEEE
Confidence 46889999999886 46666778874 4688886422 12223344433332 699999999999853 4444
No 178
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=65.36 E-value=4.6 Score=38.99 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=38.4
Q ss_pred cceeeccccceeeeeccccceEEeec----CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 629 IRDVIGKGGSTIRTLTEETGTQIDIN----DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 629 i~~~IG~gGk~ik~i~~~~g~~I~i~----~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
+++++ .| +|..| ..||++++++ -+|.+|++..++.. +...-..+++|+.+..+|.++.+
T Consensus 15 ~G~iv--~G-~V~~i-~~fGaFV~L~e~~gveGLvhiSels~~~-------v~~~~~~~~vGd~V~vkVl~vd~ 77 (175)
T 2a19_A 15 IDDIV--MV-NVQQI-AEMGAYVKLLEYDNIEGMILLSELSRRR-------IRSIQKLIRVGKNDVAVVLRVDK 77 (175)
T ss_dssp TTCEE--EE-EEEEE-ETTEEEEEETTTTTCEEEEECC---------------CCCCCCCTTSEEEEEEEEEET
T ss_pred CCCEE--EE-EEEEE-ecceEEEEEcCCCCcEEEEEHHHcCCcc-------cCCHHHcCCCCCEEEEEEEEEEC
Confidence 44544 33 35566 5899999993 48999999887654 33334568999999999999864
No 179
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=64.99 E-value=3.7 Score=37.88 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=43.5
Q ss_pred EEeeCCcccceeeccccceeeeeccccceEEeec---Ccee--EEEEecChhhhHHHHHHHHHhh
Q psy3754 621 TIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN---DEGI--ITIASFNSVSGQEAKRRIEKLT 680 (755)
Q Consensus 621 ~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~---~~G~--v~i~~~~~~~~~~a~~~i~~~~ 680 (755)
++.++....+.+||++|..|+.|+..+++.|.++ .+|. |.|+++. ..-..++.++..+.
T Consensus 59 VF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~-~~Q~rak~MI~sLA 122 (140)
T 3v69_A 59 RLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPP-PFRRDVDRMLTDLA 122 (140)
T ss_dssp EEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCH-HHHHHHHHHHHHHH
T ss_pred EEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCH-HHHHHHHHHHHHHH
Confidence 6889999999999999999999999999998885 3444 5555442 33345555665444
No 180
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=64.52 E-value=13 Score=34.77 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=39.7
Q ss_pred cEEEEEEEEE---EeeeEEEEE-------cCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEc
Q psy3754 687 KVYTGIVLRL---FDFGAIIRI-------LSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGID 744 (755)
Q Consensus 687 ~~~~G~V~~I---~~fG~FVel-------~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id 744 (755)
-...|+|+.. +.||+...- .++.+-|+|+|.|....+ +.++.||.|...+..-+
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~----~~l~eG~~V~f~~~~g~ 71 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGF----RSLKEGEAVEFTFKKSA 71 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSS----CCCCTTCEEEEEEEEET
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCC----ccCCCCCEEEEEEEEcc
Confidence 3578999998 357765532 246899999999965433 34899999999987643
No 181
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=64.39 E-value=9.9 Score=31.27 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=38.5
Q ss_pred EEEEEEEEE---eeeEEEEEcCCeeEEEeccccC-cccccCcccccCCCCEEEEEEEEEcCCCc
Q psy3754 689 YTGIVLRLF---DFGAIIRILSGKDGLLHISQIS-SKRVNIITDFLKENQKVRVKVLGIDDRGR 748 (755)
Q Consensus 689 ~~G~V~~I~---~fG~FVel~~g~~Gllhisel~-~~~~~~~~~~~kvGd~V~VkV~~id~~gk 748 (755)
+.|+|+... .||... -.+|.+-|+|+|.|. ...+ +.++.||.|...+.. +++|.
T Consensus 1 ~~G~Vkwfn~~KGfGFI~-~~dG~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~-g~kG~ 58 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQ-GDDGESYFLHFSELLDKKDE----GKLVKGSMVHFDPTP-TPKGL 58 (74)
T ss_dssp CEEEEEEEETTTTEEEEE-ETTSCEECCCGGGSSCSGGG----TTCCTTSEEEEEEEC-TTTSC
T ss_pred CCEEEEEEECCCCEEEEe-cCCCceEEEEhhhcccCCCC----CCCCCCCEEEEEEEE-CCCCc
Confidence 368898883 477554 356699999999997 4322 348999999998863 33554
No 182
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=62.66 E-value=3.6 Score=37.60 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=39.6
Q ss_pred eeeeccccceEEeec--CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 640 IRTLTEETGTQIDIN--DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 640 ik~i~~~~g~~I~i~--~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
|..| ..+|++|+++ -+|.+|++...+.... ..-..+++|+.+.++|.+|.+
T Consensus 15 V~~i-~~~G~FV~l~~~~~Glihisel~~~~~~-------~~~~~~~vGd~V~vkV~~vd~ 67 (130)
T 2k4k_A 15 VTGL-QAYGAFVALDEETQGLVHISEVTHGFVK-------DINEHLSVGDEVQVKVLAVDE 67 (130)
T ss_dssp EEEE-ETTEEEEEEETTEEEEEEGGGTSSSCCS-------CGGGTCCTTCEEEEEEEEEET
T ss_pred EEEE-eCCeEEEEECCCcEEEEEHHHCCccccc-------CccccCCCCCEEEEEEEEEeC
Confidence 5566 5799999995 5899999888655432 234568999999999999976
No 183
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=61.44 E-value=4.9 Score=49.90 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=38.6
Q ss_pred eeeeeccccceEEeec--CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEE
Q psy3754 639 TIRTLTEETGTQIDIN--DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLF 697 (755)
Q Consensus 639 ~ik~i~~~~g~~I~i~--~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~ 697 (755)
+|+.| ..||++|+++ .+|.||++..++... +......+++|+.++++|.+|.
T Consensus 909 ~V~~V-~~fGaFV~L~~gveGLVHiSelsd~~~------v~~p~~v~kvGd~V~vkVl~VD 962 (1219)
T 3psi_A 909 RVERF-WHNDIICTTNSEVECVVNAQRHAGAQL------RRPANEIYEIGKTYPAKVIYID 962 (1219)
T ss_dssp EEEEE-CSSCEEEECTTSCEEEECTTSSSSTTS------CSCSTTTSCTTCEEEEEEEEEE
T ss_pred EEEEE-ecceEEEEeCCCceEEEEHHHcCCCcc------cCCHHHcCCCCCEEEEEEEEEE
Confidence 35555 4899999885 699999998876541 1111245899999999999995
No 184
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.83 E-value=11 Score=33.66 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=47.6
Q ss_pred ccCCcEEEEEEEEEEeeeEE-EEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEc-C-CCcEEEE
Q psy3754 683 VQIGKVYTGIVLRLFDFGAI-IRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGID-D-RGRIKLS 752 (755)
Q Consensus 683 ~~~G~~~~G~V~~I~~fG~F-Vel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id-~-~gki~LS 752 (755)
+..| .+.|+|+.....+.| |++.+|..-|.|++- ++++ .--++.||.|.|....-| . +|+|..-
T Consensus 12 p~eg-e~~g~V~~~lgn~~f~V~l~nG~~~la~i~G----K~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r 78 (111)
T 2dgy_A 12 PSNQ-QQIVRVLRTPGNNLHEVETAQGQRFLVSMPS----KYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFV 78 (111)
T ss_dssp CCSS-CEEEEEEECCSSSEEEEECTTSCEEEEECCT----TCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEE
T ss_pred CCCC-eEEEEEEEeCCCCEEEEEeCCCCEEEEEech----hhcc-cEEEcCCCEEEEEecccCCcceEEEEEE
Confidence 4454 578999999998887 788899999999874 2232 334899999999987665 3 5777643
No 185
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=60.37 E-value=4 Score=49.88 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred eeeeeccccceEEeec--CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEE
Q psy3754 639 TIRTLTEETGTQIDIN--DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLF 697 (755)
Q Consensus 639 ~ik~i~~~~g~~I~i~--~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~ 697 (755)
+|+.+ ..||++|+++ .+|.||++...+... +......+++|+.++++|.+|.
T Consensus 912 ~V~~V-~~fGaFV~L~~gveGLVHiSelsd~~~------v~~~~~v~kvGd~V~vkVl~VD 965 (1030)
T 3psf_A 912 RVERF-WHNDIICTTNSEVECVVNAQRHAGAQL------RRPANEIYEIGKTYPAKVIYID 965 (1030)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEE-ccCeEEEEeCCCcEEEEEHHHcCCCcc------cCCHHHcCCCCCEEEEEEEEEE
Confidence 35555 4899999775 699999998876541 1222345899999999999985
No 186
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=59.96 E-value=22 Score=30.39 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=37.9
Q ss_pred EEEEEEEEE---EeeeEEEE-------EcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEE
Q psy3754 688 VYTGIVLRL---FDFGAIIR-------ILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGI 743 (755)
Q Consensus 688 ~~~G~V~~I---~~fG~FVe-------l~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~i 743 (755)
...|+|+.. +-||.... ..++.+-|+|+|.|...-+ +.+..||.|...+..=
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~----~~L~eG~~V~f~v~~g 69 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGF----RSLKEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSS----CCCCTTCEEEEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCC----CccCCCCEEEEEEEEC
Confidence 467999987 45776642 2346789999999965433 3488999999988764
No 187
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=58.39 E-value=3.1 Score=36.58 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=47.2
Q ss_pred CcEEEEEEEEEEeeeEE-EEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEc-C-CCcEEEE
Q psy3754 686 GKVYTGIVLRLFDFGAI-IRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGID-D-RGRIKLS 752 (755)
Q Consensus 686 G~~~~G~V~~I~~fG~F-Vel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id-~-~gki~LS 752 (755)
.....|+|+...+.+.| |++.+|..-|.|++- ++++ .--++.||.|.|.....| . +|+|..-
T Consensus 19 e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~G----KmRk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r 83 (102)
T 1jt8_A 19 ENEILGIIEQMLGASRVRVRCLDGKTRLGRIPG----RLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWR 83 (102)
T ss_dssp SCCEEEEEECSSCSSEEEEEEETTEEEEEECCH----HHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEE
T ss_pred CCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcc----ccee-eEEecCCCEEEEEeccCCCCceEEEEEE
Confidence 35688999999999887 888999999999874 2232 233889999999887777 4 6776543
No 188
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=58.38 E-value=6 Score=38.20 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=34.3
Q ss_pred cccceEEeecC------------ceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEE
Q psy3754 645 EETGTQIDIND------------EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLR 695 (755)
Q Consensus 645 ~~~g~~I~i~~------------~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~ 695 (755)
..+|++++|.. +|.+|++...+... +.+...+++||++.++|.+
T Consensus 69 ~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~-------~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 69 RNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYV-------KEISEAVGYLDILKARVIG 124 (179)
T ss_dssp CSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCC-------SSGGGTCCTTCEEEEEEEE
T ss_pred eCCcEEEEEccccCcccccccCeeEEEEHHHcCcchh-------hCHhhcCCCCCEEEEEEEC
Confidence 47889999853 79999988766543 2445668999999999997
No 189
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=53.98 E-value=5.3 Score=35.13 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=43.6
Q ss_pred ccceeeccccceeeeeccccceEEeec--CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEeee
Q psy3754 628 KIRDVIGKGGSTIRTLTEETGTQIDIN--DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFG 700 (755)
Q Consensus 628 ki~~~IG~gGk~ik~i~~~~g~~I~i~--~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~fG 700 (755)
++++++ .| +|..+ ..+|++++++ -+|.++++...+... ...-..+++|+.+.++|.++.+.+
T Consensus 30 ~~G~iv--~G-~V~~v-~~~G~fV~l~~~~~Gll~~sel~~~~~-------~~~~~~~~vGd~V~v~V~~vd~~~ 93 (109)
T 2khj_A 30 KKGAIV--TG-KVTAV-DAKGATVELADGVEGYLRASEASRDRV-------EDATLVLSVGDEVEAKFTGVDRKN 93 (109)
T ss_dssp CSSSEE--EE-EEEEE-CSSCEEEECSTTCBCCBCTTCCCSSSS-------SSGGGSCCTTCEEEEEEEEEETTT
T ss_pred CCCCEE--EE-EEEEE-ECCeEEEEECCCCEEEEEHHHcCcccc-------cChhhccCCCCEEEEEEEEEECCC
Confidence 344544 34 35555 4799999997 489999987765432 223446899999999999997644
No 190
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=53.57 E-value=5.9 Score=35.25 Aligned_cols=52 Identities=19% Similarity=0.399 Sum_probs=38.1
Q ss_pred eeeeccccceEEeec--CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 640 IRTLTEETGTQIDIN--DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 640 ik~i~~~~g~~I~i~--~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
|..+ ..+|++++++ -+|.++++...+.. .+...-..+++|+.+..+|.++..
T Consensus 38 V~~v-~~~G~FV~l~~~~~Glvhisel~~~~------~~~~~~~~~~vGd~V~vkV~~vd~ 91 (115)
T 2khi_A 38 VTNL-TDYGCFVEIEEGVEGLVHVSEMDWTN------KNIHPSKVVNVGDVVEVMVLDIDE 91 (115)
T ss_dssp EEEE-ETTEEEEECSTTCEEEEETTSSSCSS------TTCSSTTTCCTTCEEEEEEEEEET
T ss_pred EEEE-ECCEEEEEECCCCEEEEEHHHCCccc------cccCcccEECCCCEEEEEEEEEEC
Confidence 5555 4699999996 58999998876521 112233458999999999999875
No 191
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=58.65 E-value=2.8 Score=34.15 Aligned_cols=51 Identities=27% Similarity=0.287 Sum_probs=37.0
Q ss_pred EEEEEEEEE---EeeeEEEEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEE
Q psy3754 688 VYTGIVLRL---FDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLG 742 (755)
Q Consensus 688 ~~~G~V~~I---~~fG~FVel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~ 742 (755)
.+.|+|+.. +.||....-.++.+-|+|+|.|..... +.++.||.|...+..
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGL----HSLEEGQDVIFDLEE 57 (70)
Confidence 467888887 447765543346899999999975422 347899999988754
No 192
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=53.21 E-value=5.2 Score=34.22 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=36.6
Q ss_pred cEEEEEEEEEE-eeeEEEEEcC-CeeEEEeccccCcccccCcccccCCCCEEEEEEEE
Q psy3754 687 KVYTGIVLRLF-DFGAIIRILS-GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLG 742 (755)
Q Consensus 687 ~~~~G~V~~I~-~fG~FVel~~-g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~ 742 (755)
..+.|+|+... .|| |+.-.+ +.+-|+|+|.+... +.+++||+|...+..
T Consensus 7 ~r~~G~Vk~f~KGfG-FI~~~~gg~DvFvH~s~i~~~------~~L~~G~~V~F~v~~ 57 (89)
T 1x65_A 7 GREMGVIAAMRDGFG-FIKCVDRDVRMFFHFSEILDG------NQLHIADEVEFTVVP 57 (89)
T ss_dssp CCEEEEEEECCTTBC-EEEESSSSSCCCCBTTGGGGS------CCCCTTCCEEECCBC
T ss_pred cceeEEEEEEeCCcc-eeecCCCCccEEEEhhhccCC------CCCCCCCEEEEEEEe
Confidence 46789999984 455 555444 58999999999642 469999999987754
No 193
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=50.43 E-value=22 Score=35.10 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=40.7
Q ss_pred eeeeccccceEEeec----------CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEeee--EEEEE
Q psy3754 640 IRTLTEETGTQIDIN----------DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFG--AIIRI 705 (755)
Q Consensus 640 ik~i~~~~g~~I~i~----------~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~fG--~FVel 705 (755)
|..+ ..+|++++|. -+|.++++...+...+. ..+-..+++||++.++|.++.+.+ +.+.+
T Consensus 89 V~~v-~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~-----~~~~~~l~~GD~V~akVisi~~~~~~i~LS~ 160 (209)
T 2nn6_I 89 VSSI-NSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDK-----VEIYKSFRPGDIVLAKVISLGDAQSNYLLTT 160 (209)
T ss_dssp EEEE-CSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCC-----CCGGGTCCSSSEEEEEEEEEETTTTEEEEEC
T ss_pred EEEE-ECceEEEEECccccccccCCceeEEEHHHcccccccc-----cchhhhcCCCCEEEEEEEEEeCCCCeEEEEE
Confidence 3344 5788999973 37999998776543221 023455899999999999997643 44444
No 194
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=50.29 E-value=14 Score=33.26 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=41.6
Q ss_pred cccCCcEEEEEEEEEEeeeEE-EEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcC-CCcEE
Q psy3754 682 SVQIGKVYTGIVLRLFDFGAI-IRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDD-RGRIK 750 (755)
Q Consensus 682 ~~~~G~~~~G~V~~I~~fG~F-Vel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~-~gki~ 750 (755)
.+..|+. .|+|+.....|.| |++.+|..=++|++- ++.. .--+.+||.|.|.+...|. +|.|.
T Consensus 28 ~~~~~e~-~G~Vi~~lgn~~y~V~~~dG~~~l~~i~G----K~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~ 92 (117)
T 2oqk_A 28 FKEEGQE-YGQVQRMLGNGRLDAYCFDGQKRLCHIRG----KMRK-KVWVNPGDIVLVSLRDFQDSKGDII 92 (117)
T ss_dssp CCCTTEE-EEEEEEEEETTEEEEEETTSCEEEEECCH----HHHH-HSCCCTTCEEEEEECTTCTTEEEEE
T ss_pred CCCCCEE-EEEEEEEcCCCEEEEEeCCCCEEEEEEcC----ceec-CCcCCCCCEEEEEEEcCCCCeEEEE
Confidence 3556665 7999999996665 777888777888763 2222 2236699999987653233 45554
No 195
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=46.47 E-value=12 Score=31.14 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=37.3
Q ss_pred EEEEEEEEE-EeeeEEEEEc-C-CeeEEEeccccCcccccCcccccCCCCEEEEEEEEEcCCCc
Q psy3754 688 VYTGIVLRL-FDFGAIIRIL-S-GKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGR 748 (755)
Q Consensus 688 ~~~G~V~~I-~~fG~FVel~-~-g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~~id~~gk 748 (755)
...|+|..+ +-||.. .-. + +.+-|+|+|.|... ..++.||.|...+..-+..|+
T Consensus 8 ~~~G~V~~~~KGfGFI-~~ddg~g~DvFvH~s~i~~g------~~l~~G~~V~F~v~~~~k~G~ 64 (79)
T 2ytv_A 8 LRRATVECVKDQFGFI-NYEVGDSKKLFFHVKEVQDG------IELQAGDEVEFSVILNQRTGK 64 (79)
T ss_dssp BCCEEEEECCSSEEEE-SCCCSSSSSEEEETTTCCSS------CCCCTTCEEECBCEECSSSCC
T ss_pred cccEEEEEecccceeE-eCCCCCCCcEEEEhHHcCCC------CcCCCCCEEEEEEEECCCCCC
Confidence 457888887 456654 434 3 38999999999722 358999999998865322254
No 196
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=44.07 E-value=22 Score=31.58 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=33.9
Q ss_pred eeeeccccceEEeec--CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 640 IRTLTEETGTQIDIN--DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 640 ik~i~~~~g~~I~i~--~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
|+.+ ++||++++++ ..+.++++.... + .......-..+++|+.++.+|.++..
T Consensus 29 V~~v-~~fG~fV~l~~~~~~~l~~~~~~~---~--~~~~~~~~~~~~~Gd~V~vkV~~vd~ 83 (119)
T 1wi5_A 29 VSSL-EDHGYLVDIGVDGTRAFLPLLKAQ---E--YIRQKNKGAKLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp EEEE-CSSEEEEECCCSSCEEEEEHHHHH---H--HHHHHSSSCCCCTTCEEEEEEEECCT
T ss_pred EEEE-eCceEEEEECCCCeEEEEEEeccc---c--cccccCccCEeCCCCEEEEEEEEEeC
Confidence 5555 5899999997 355566543210 0 01112223568999999999999865
No 197
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=40.16 E-value=16 Score=36.76 Aligned_cols=58 Identities=29% Similarity=0.356 Sum_probs=46.8
Q ss_pred eEEeeCCcccceeeccccceeeeeccccceEEeecCceeEEEEecChhhhHHHHHHHH
Q psy3754 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIE 677 (755)
Q Consensus 620 ~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~~~~a~~~i~ 677 (755)
..+.++|.+++.++|++|..+..+-+.++++|-++.+|.+.|...+......+.+.|+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG~IWi~~~~~~~~~~~~~ai~ 207 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNEDLEAIAVMAIK 207 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETTTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeCCCEEEEecCCHHHHHHHHHHHH
Confidence 4568999999999999998888777778999999999999999877655554444443
No 198
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=37.29 E-value=17 Score=37.51 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=42.9
Q ss_pred cceeeccccceeeeeccccceEEeec----CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 629 IRDVIGKGGSTIRTLTEETGTQIDIN----DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 629 i~~~IG~gGk~ik~i~~~~g~~I~i~----~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
+++++ .| +|..| .+||++++++ -+|.+|++..++.... ..-..+++|+.+..+|.++..
T Consensus 11 ~Gdiv--~G-~V~~I-~~fGaFV~L~e~~gieGlIhiSels~~~v~-------~~~~~~kvGd~V~vkVi~vD~ 73 (275)
T 3aev_A 11 EGEFV--VA-TVKRI-HNYGAFLELDEYPGKEAFMHISEVASTWVR-------NIRDYLKEGQKVVAKVIRVDP 73 (275)
T ss_dssp TTCEE--EE-EEEEE-ETTEEEEEETTSTTCEEEEEGGGSCSSCCS-------CGGGTCCTTCEEEEEEEEEET
T ss_pred CCCEE--EE-EEEEE-ECcEEEEEECCCCCeEEEEEHHHcCccccc-------CHHhccCCCCEEEEEEEEEEC
Confidence 44444 34 35666 5799999995 4899999988765432 234468999999999999865
No 199
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=37.03 E-value=19 Score=29.06 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=32.3
Q ss_pred EEEEEEEEEeeeEE-EEEcCCeeEEEeccccCcccccCcccccCCCCEEEEEEE
Q psy3754 689 YTGIVLRLFDFGAI-IRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVL 741 (755)
Q Consensus 689 ~~G~V~~I~~fG~F-Vel~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~ 741 (755)
..|+|++....|.| |++.+|..=++|++-- +++-.--..+||.|.+.+.
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk----~Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELENGHVVTAHISGK----MRKNYIRILTGDKVTVELT 57 (71)
T ss_dssp CCEEEEEECSSSEEEEEETTSCEEEEEECSS----GGGTTCCCCTTCEECCEEC
T ss_pred EEEEEEEEeCCcEEEEEECCCCEEEEEEcce----EeccCccCCCCCEEEEEEe
Confidence 47999999886665 6776776667776632 2211122469999998764
No 200
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=35.13 E-value=14 Score=38.83 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=42.6
Q ss_pred cceeeccccceeeeeccccceEEeec----CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 629 IRDVIGKGGSTIRTLTEETGTQIDIN----DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 629 i~~~IG~gGk~ik~i~~~~g~~I~i~----~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
+++++ .| +|+.|. .||++|+++ -+|.+|++..++... +..-..+++|+.+..+|.++.+
T Consensus 13 vG~iv--~G-~V~~I~-~fGaFV~L~ey~gveGLvhiSels~~~i-------~~~~~~~kvGd~V~VkVl~vD~ 75 (308)
T 1q8k_A 13 VEDVV--MV-NVRSIQ-EMGAYVSLLEYNNIEGMIHLSELSRRRI-------RSINKLIRIGRNECVKVIRVDK 75 (308)
T ss_dssp SCCEE--EE-EEEEEE-TTEEEEESCTTTSCCEEECGGGTSCSSC-------SCCTTTCSSSCEEEEEEEEEET
T ss_pred CCCEE--EE-EEEEEe-CcEEEEEECCCCCeEEEEEhHHcCcccc-------cCHHHhcCCCCEEEEEEEEEeC
Confidence 45544 34 366664 699999994 589999998876542 2334458999999999999865
No 201
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=35.04 E-value=6.2 Score=36.87 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=31.5
Q ss_pred ceeEEeeCCcccceeeccccceeeeeccccceEEee
Q psy3754 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDI 653 (755)
Q Consensus 618 ~~~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i 653 (755)
....+-+++..++..||++|..|+.+.+++|-+||+
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdI 71 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEV 71 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEE
Confidence 334566788889999999999999999999999987
No 202
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=31.44 E-value=17 Score=36.43 Aligned_cols=47 Identities=32% Similarity=0.521 Sum_probs=40.5
Q ss_pred eEEeeCCcccceeeccccceeeeeccccceEEeecCceeEEEEecCh
Q psy3754 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666 (755)
Q Consensus 620 ~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~ 666 (755)
..+.++|.+++.++|+.+..+..+.+.+++.|-++.+|.+.|...+.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~ 184 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNGDRR 184 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTTSEEEEESCHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECCcEEEEeCCch
Confidence 45689999999999999888888877899999999999999986543
No 203
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=30.21 E-value=14 Score=38.56 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=46.1
Q ss_pred eEEeeCCcccceeeccccceeeeeccccceEEeecCceeEEEEecChhhhHHHHHHH
Q psy3754 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRI 676 (755)
Q Consensus 620 ~~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~~~~a~~~i 676 (755)
..++|++.+++.++|+.+..++.+.+.+++.|-++.+|+|.|...+....-.....+
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG~NG~IWI~~~~~~~~~~i~~aI 268 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANIL 268 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEETTTEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEECCcEEEEecCChhHHHHHHHHH
Confidence 468899999999999999888888778899999999999999987665444444433
No 204
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=30.00 E-value=13 Score=38.20 Aligned_cols=51 Identities=8% Similarity=0.169 Sum_probs=38.5
Q ss_pred eeeeccccceEEeec----CceeEEEEecChhhhHHHHHHHHHhhhcccCCcEEEEEEEEEEe
Q psy3754 640 IRTLTEETGTQIDIN----DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 640 ik~i~~~~g~~I~i~----~~G~v~i~~~~~~~~~~a~~~i~~~~~~~~~G~~~~G~V~~I~~ 698 (755)
|..+ ..+|++++++ -+|.+|++...+..... .-..+++|+.+..+|.++.+
T Consensus 19 V~~I-~~~GaFV~l~e~~~~~GlihiSels~~~v~~-------~~~~~~vGd~V~VkVi~vd~ 73 (266)
T 3cw2_C 19 VKQV-FDYGSYVSLDEYGGLQAFLPWSEVSSKWVKN-------IRDVLKENRKVIVKVIRVDR 73 (266)
T ss_dssp EEEC-CSSSBEEEETTTTSEECBBCGGGSSCSSCCC-------HHHHSCTTCEEEEEECCCCS
T ss_pred EEEE-eccEEEEEEcCCCCeEEEEEhHHcCcccccC-------HHHhCcCCCEEEEEEEEEeC
Confidence 5556 4699999995 38999999887654322 23348999999999999854
No 205
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=28.52 E-value=32 Score=27.95 Aligned_cols=29 Identities=7% Similarity=0.393 Sum_probs=23.7
Q ss_pred CcccccCCCCEEEEEEEEEcCCCcEEEEEe
Q psy3754 725 IITDFLKENQKVRVKVLGIDDRGRIKLSMI 754 (755)
Q Consensus 725 ~~~~~~kvGd~V~VkV~~id~~gki~LS~k 754 (755)
++.+.+.+||.|+++|++++ .++++|.+.
T Consensus 7 k~GEsI~IGd~I~ItVl~v~-g~~VrLGI~ 35 (70)
T 2jpp_A 7 KVGESINIGDDITITILGVS-GQQVRIGIN 35 (70)
T ss_dssp ETTCEEEETTTEEEEEEEEE-TTEEEEEEE
T ss_pred cCCCeEEECCCEEEEEEEEe-CCEEEEEEE
Confidence 45667899999999999997 578888763
No 206
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=28.27 E-value=24 Score=33.90 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=41.4
Q ss_pred eEEeeCCcccceeeccccc-eeeeeccccceEEeecCceeEEEEecChhhhH
Q psy3754 620 ITIKIDPSKIRDVIGKGGS-TIRTLTEETGTQIDINDEGIITIASFNSVSGQ 670 (755)
Q Consensus 620 ~~~~i~~~ki~~~IG~gGk-~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~~~ 670 (755)
..++++|.+++.++|+.|. .++.+.+.+++.|-++.+|.+.|...+....-
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~~~ 144 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTL 144 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETTTEEEEECSSHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEECCcEEEEecCCHHHHH
Confidence 3688999999999996555 67777778899999999999999987764433
No 207
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=26.43 E-value=37 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=23.1
Q ss_pred CcccccCCCCEEEEEEEEEcCCCcEEEEE
Q psy3754 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753 (755)
Q Consensus 725 ~~~~~~kvGd~V~VkV~~id~~gki~LS~ 753 (755)
++.+.+.+||.|+++|++++ .++++|.+
T Consensus 9 k~GE~I~Igd~I~I~Vl~i~-g~~VrlGI 36 (63)
T 2bti_A 9 RVGETLMIGDEVTVTVLGVK-GNQVRIGV 36 (63)
T ss_dssp ETTCEEEETTTEEEEEEEEE-TTEEEEEE
T ss_pred cCCCeEEeCCCEEEEEEEEe-CCEEEEEE
Confidence 45667899999999999997 57788765
No 208
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=25.04 E-value=40 Score=27.59 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=24.0
Q ss_pred cCcccccCCCCEEEEEEEEEcCCCcEEEEE
Q psy3754 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753 (755)
Q Consensus 724 ~~~~~~~kvGd~V~VkV~~id~~gki~LS~ 753 (755)
+++.+.+.+||.|+++|++++ .++++|.+
T Consensus 18 RK~GEsI~IGddI~ItVl~i~-g~qVrLGI 46 (73)
T 1vpz_A 18 RRVGETLMVGDDVTVTVLGVK-GNQVRIGV 46 (73)
T ss_dssp EETTCEEEETTTEEEEEEEEE-TTEEEEEE
T ss_pred ccCCCEEEeCCCEEEEEEEEe-CCEEEEEE
Confidence 456778999999999999997 57787765
No 209
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=23.80 E-value=99 Score=23.84 Aligned_cols=50 Identities=22% Similarity=0.135 Sum_probs=29.4
Q ss_pred cEEEEEEEEEEeeeEEEEE----cCCeeEEEeccccCcccccCcccccCCCCEEEEEEE
Q psy3754 687 KVYTGIVLRLFDFGAIIRI----LSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVL 741 (755)
Q Consensus 687 ~~~~G~V~~I~~fG~FVel----~~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~ 741 (755)
..+.|+|++|...|..+++ .++.. +. +.++.+...+ -.+++||.|.+.+.
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~-l~--a~it~~s~~~--l~L~~G~~V~a~ik 60 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNK-IT--SIISLDSVEE--LGVKEGAELTAVVK 60 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCE-EE--EEEEHHHHHH--HTCCTTCEEEEECC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCE-EE--EEeCHHHHHH--CCCCCCCEEEEEEe
Confidence 4689999999988854333 22322 11 2222221221 23899999998864
No 210
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=23.27 E-value=1.2e+02 Score=23.04 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCCCCCCchhh-HHHHHHHHHHHHHHH
Q psy3754 8 KASIILDNSRTKNDTGSPEVQ-VALLTSRINDLNIHF 43 (755)
Q Consensus 8 k~~~~~~~~~~~~d~gs~evq-ia~lt~~I~~l~~h~ 43 (755)
|-+-|+..-..+....|+..| +-++|.||+.|..-+
T Consensus 24 klkairqlcgaedssdssdmqeveiwtnrikeledwl 60 (67)
T 2nr5_A 24 KLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWL 60 (67)
T ss_dssp HHHHHHHTTTTTCC----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccCCcchhhHHHHHHHHHHHHHHHHh
Confidence 444555666666666666666 679999999998755
No 211
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=22.57 E-value=25 Score=33.39 Aligned_cols=58 Identities=5% Similarity=0.008 Sum_probs=36.9
Q ss_pred eeeeccccceEEeec-CceeEEEEecChhhh-HHHHHHHHHh--hhcccCCcEEEEEEEEEEe
Q psy3754 640 IRTLTEETGTQIDIN-DEGIITIASFNSVSG-QEAKRRIEKL--TESVQIGKVYTGIVLRLFD 698 (755)
Q Consensus 640 ik~i~~~~g~~I~i~-~~G~v~i~~~~~~~~-~~a~~~i~~~--~~~~~~G~~~~G~V~~I~~ 698 (755)
|+.+ .+||++++++ .||.+|++....... +.....|... -..+++|+.+.-+|.++..
T Consensus 91 V~~v-~~fG~FV~l~~~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 152 (171)
T 1y14_B 91 VVSC-SQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCIS 152 (171)
T ss_dssp EEEE-ETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEE
T ss_pred EEEE-ecCEEEEEecCeEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEc
Confidence 5555 4899999996 699999997753311 1111111000 0448999999999999853
No 212
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=21.67 E-value=9.7 Score=38.85 Aligned_cols=48 Identities=35% Similarity=0.434 Sum_probs=35.1
Q ss_pred EEeeCCcccceeeccccceeeeeccccceEEeecCceeEEEEecChhh
Q psy3754 621 TIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVS 668 (755)
Q Consensus 621 ~~~i~~~ki~~~IG~gGk~ik~i~~~~g~~I~i~~~G~v~i~~~~~~~ 668 (755)
.+.++|.+++.++|+.+..+..+.+.+++.|-++.+|.+.|...+...
T Consensus 158 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~~ 205 (251)
T 2je6_I 158 VIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRFS 205 (251)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHTTC---CEECTTSEEEC-----CT
T ss_pred EEEECHHHhHHHhcCcchHHHHhcccCCeEEEEECCcEEEEeCCCHHH
Confidence 468899999999999998888887789999999999999998766543
No 213
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=21.48 E-value=45 Score=25.67 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=28.8
Q ss_pred cEEEEEEEEEEeeeEEEEE--c-CCeeEEEeccccCcccccCcccccCCCCEEEEEEE
Q psy3754 687 KVYTGIVLRLFDFGAIIRI--L-SGKDGLLHISQISSKRVNIITDFLKENQKVRVKVL 741 (755)
Q Consensus 687 ~~~~G~V~~I~~fG~FVel--~-~g~~Gllhisel~~~~~~~~~~~~kvGd~V~VkV~ 741 (755)
-.+.|+|++|..-|..+++ . ++.. +. +.++..-..+ -.+++||.|.+.+.
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~--l~-a~it~~s~~~--l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTE--LV-AAITIDSVAD--LDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEE--EE-EEEEHHHHHH--HTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCE--EE-EEeCHHHHHh--CCCCCCCEEEEEEe
Confidence 4689999999988754433 2 2221 11 1121111111 23899999999874
Done!