Your job contains 1 sequence.
>psy3754
MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMK
GNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFF
PLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYV
LSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDL
LVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIV
KDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCI
LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL
GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP
NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV
ILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK
MKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIIT
IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS
KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSMIY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3754
(755 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 1999 1.1e-206 1
UNIPROTKB|P05055 - symbol:pnp "polynucleotide phosphoryla... 1986 2.6e-205 1
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc... 1940 2.0e-200 1
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot... 1928 3.6e-199 1
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc... 1928 3.6e-199 1
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n... 1894 1.5e-195 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 1882 2.7e-194 1
UNIPROTKB|Q0BWM9 - symbol:pnp "Polyribonucleotide nucleot... 1652 6.4e-170 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 1645 3.6e-169 1
TIGR_CMR|SPO_3389 - symbol:SPO_3389 "polyribonucleotide n... 1614 6.8e-166 1
TIGR_CMR|CHY_1758 - symbol:CHY_1758 "polyribonucleotide n... 1613 8.7e-166 1
UNIPROTKB|P50849 - symbol:pnp "Polyribonucleotide nucleot... 1581 2.2e-162 1
TIGR_CMR|BA_3944 - symbol:BA_3944 "polyribonucleotide nuc... 1541 3.7e-158 1
TIGR_CMR|ECH_0726 - symbol:ECH_0726 "polyribonucleotide n... 1541 3.7e-158 1
TIGR_CMR|DET_0970 - symbol:DET_0970 "polyribonucleotide n... 1533 2.6e-157 1
UNIPROTKB|Q2GJV5 - symbol:pnp "Polyribonucleotide nucleot... 1458 2.3e-149 1
TIGR_CMR|APH_0767 - symbol:APH_0767 "polyribonucleotide n... 1458 2.3e-149 1
TAIR|locus:2079429 - symbol:RIF10 "AT3G03710" species:370... 909 3.1e-138 2
TIGR_CMR|NSE_0057 - symbol:NSE_0057 "polyribonucleotide n... 1304 4.8e-133 1
UNIPROTKB|O33325 - symbol:pnp "Polyribonucleotide nucleot... 904 1.3e-130 2
TAIR|locus:2222662 - symbol:AT5G14580 "AT5G14580" species... 1261 1.7e-128 1
FB|FBgn0039846 - symbol:CG11337 species:7227 "Drosophila ... 984 3.9e-99 1
MGI|MGI:1918951 - symbol:Pnpt1 "polyribonucleotide nucleo... 983 5.0e-99 1
UNIPROTKB|G3V6G7 - symbol:Pnpt1 "Polyribonucleotide nucle... 982 6.4e-99 1
UNIPROTKB|Q8TCS8 - symbol:PNPT1 "Polyribonucleotide nucle... 978 1.7e-98 1
UNIPROTKB|E1BIQ0 - symbol:PNPT1 "Uncharacterized protein"... 975 3.5e-98 1
UNIPROTKB|Q5RCW2 - symbol:PNPT1 "Polyribonucleotide nucle... 970 1.2e-97 1
UNIPROTKB|F1NU18 - symbol:PNPT1 "Uncharacterized protein"... 911 2.1e-91 1
UNIPROTKB|E2QWK2 - symbol:PNPT1 "Uncharacterized protein"... 909 3.5e-91 1
TIGR_CMR|CJE_1390 - symbol:CJE_1390 "polyribonucleotide n... 851 4.9e-85 1
WB|WBGene00015266 - symbol:BE0003N10.1 species:6239 "Caen... 812 6.6e-81 1
UNIPROTKB|H7BZ02 - symbol:PNPT1 "Polyribonucleotide nucle... 788 2.3e-78 1
RGD|1307987 - symbol:Pnpt1 "polyribonucleotide nucleotidy... 656 2.3e-64 1
UNIPROTKB|I3LEL9 - symbol:LOC100737729 "Uncharacterized p... 392 1.4e-35 1
UNIPROTKB|F1SQL0 - symbol:PNPT1 "Uncharacterized protein"... 269 2.7e-22 1
UNIPROTKB|H7BXF6 - symbol:PNPT1 "Polyribonucleotide nucle... 254 1.1e-20 1
TIGR_CMR|CPS_2206 - symbol:CPS_2206 "ribosomal protein S1... 178 1.6e-12 1
TIGR_CMR|SO_1207 - symbol:SO_1207 "ribosomal protein S15"... 174 4.2e-12 1
UNIPROTKB|Q9KU77 - symbol:rpsO "30S ribosomal protein S15... 173 5.4e-12 1
TIGR_CMR|VC_0646 - symbol:VC_0646 "ribosomal protein S15"... 173 5.4e-12 1
UNIPROTKB|P0ADZ4 - symbol:rpsO species:83333 "Escherichia... 161 1.0e-10 1
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370... 169 1.6e-10 1
TIGR_CMR|BA_3945 - symbol:BA_3945 "ribosomal protein S15"... 158 2.2e-10 1
TIGR_CMR|CHY_1760 - symbol:CHY_1760 "ribosomal protein S1... 157 2.8e-10 1
TIGR_CMR|GSU_1592 - symbol:GSU_1592 "ribosomal protein S1... 155 4.5e-10 1
UNIPROTKB|P66429 - symbol:rpsO "30S ribosomal protein S15... 150 1.6e-09 1
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 168 2.8e-09 2
TIGR_CMR|SPO_3840 - symbol:SPO_3840 "ribosomal protein S1... 147 3.3e-09 1
TIGR_CMR|CBU_0851 - symbol:CBU_0851 "ribosomal protein S1... 146 4.2e-09 1
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone... 152 3.6e-08 1
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot... 135 6.3e-08 1
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe... 150 6.4e-08 1
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone... 149 8.5e-08 1
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein... 148 1.1e-07 1
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon... 148 1.1e-07 1
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein... 147 1.5e-07 1
TIGR_CMR|CJE_0964 - symbol:CJE_0964 "ribosomal protein S1... 131 1.7e-07 1
RGD|1310986 - symbol:Exosc4 "exosome component 4" species... 146 2.0e-07 1
UNIPROTKB|Q84T68 - symbol:RRP46 "Exosome complex exonucle... 145 2.2e-07 1
UNIPROTKB|Q81VX9 - symbol:BAS0060 "S1 RNA binding domain ... 129 2.7e-07 1
TIGR_CMR|BA_0060 - symbol:BA_0060 "S1 RNA binding domain ... 129 2.7e-07 1
TIGR_CMR|BA_5132 - symbol:BA_5132 "general stress protein... 129 2.7e-07 1
TAIR|locus:2065165 - symbol:DUF5 "AT2G47220" species:3702... 150 4.1e-07 1
TIGR_CMR|ECH_0727 - symbol:ECH_0727 "ribosomal protein S1... 125 7.3e-07 1
TIGR_CMR|CHY_0314 - symbol:CHY_0314 "ribonuclease PH" spe... 140 1.2e-06 1
TIGR_CMR|CPS_0112 - symbol:CPS_0112 "ribonuclease PH" spe... 137 1.9e-06 1
UNIPROTKB|Q71X59 - symbol:LMOf2365_2340 "S1 RNA binding d... 121 2.0e-06 1
TIGR_CMR|APH_0768 - symbol:APH_0768 "ribosomal protein S1... 121 2.0e-06 1
UNIPROTKB|Q9KVD6 - symbol:rph "Ribonuclease PH" species:2... 137 2.0e-06 1
TIGR_CMR|VC_0210 - symbol:VC_0210 "ribonuclease PH" speci... 137 2.0e-06 1
TIGR_CMR|DET_0969 - symbol:DET_0969 "ribosomal protein S1... 120 2.5e-06 1
UNIPROTKB|H7C3C5 - symbol:PNPT1 "Polyribonucleotide nucle... 117 5.3e-06 1
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species... 132 7.9e-06 1
UNIPROTKB|P0CG19 - symbol:rph "RNase PH monomer" species:... 131 8.4e-06 1
UNIPROTKB|P28619 - symbol:rph "Ribonuclease PH" species:2... 132 8.7e-06 1
FB|FBgn0032487 - symbol:Ski6 "Ski6" species:7227 "Drosoph... 131 1.1e-05 1
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 136 1.8e-05 1
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 136 1.8e-05 1
POMBASE|SPAC3G9.10c - symbol:rrp41 "exosomal 3'-to-5' pho... 129 1.8e-05 1
TIGR_CMR|NSE_0058 - symbol:NSE_0058 "ribosomal protein S1... 110 3.0e-05 1
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 134 3.0e-05 1
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 134 3.0e-05 1
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 133 3.8e-05 1
CGD|CAL0004768 - symbol:PRP22 species:5476 "Candida albic... 135 5.1e-05 1
TIGR_CMR|BA_4715 - symbol:BA_4715 "ribonuclease PH" speci... 125 5.5e-05 1
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 130 8.1e-05 1
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s... 128 8.5e-05 1
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1... 127 0.00010 1
TIGR_CMR|SPO_0008 - symbol:SPO_0008 "ribonuclease PH" spe... 122 0.00011 1
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 123 0.00014 2
SGD|S000000815 - symbol:PRP22 "DEAH-box RNA-dependent ATP... 130 0.00021 1
POMBASE|SPAC10F6.02c - symbol:prp22 "ATP-dependent RNA he... 110 0.00021 2
TIGR_CMR|CBU_0299 - symbol:CBU_0299 "ribonuclease PH" spe... 119 0.00024 1
DICTYBASE|DDB_G0291183 - symbol:dhx8 "putative RNA splici... 129 0.00027 1
WB|WBGene00003393 - symbol:mog-5 species:6239 "Caenorhabd... 141 0.00036 2
UNIPROTKB|Q09530 - symbol:mog-5 "Probable pre-mRNA-splici... 141 0.00036 2
UNIPROTKB|G4NFJ0 - symbol:MGG_08807 "Pre-mRNA-splicing fa... 127 0.00046 1
TAIR|locus:2124024 - symbol:RRP41L "AT4G27490" species:37... 116 0.00066 1
RGD|1307861 - symbol:Exosc5 "exosome component 5" species... 115 0.00068 1
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A... 113 0.00072 2
WARNING: Descriptions of 4 database sequences were not reported due to the
limiting value of parameter V = 100.
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 1999 (708.7 bits), Expect = 1.1e-206, P = 1.1e-206
Identities = 379/690 (54%), Positives = 518/690 (75%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I K F+ G + +++E G IARQA+++V+ S++DT +L +VV K+ +FFPLT
Sbjct: 1 MLNPITKKFQLGKHTVTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+AYAAG+IPGSFFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NE+Q+++ V+SV
Sbjct: 61 VNYQERAYAAGKIPGSFFKREGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NP+I PDI S+IG S AL+IS LPF GP+G A+VGY DG+YILNP +L S LDL+V+
Sbjct: 121 NPEIAPDIISLIGTSAALAISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLDLVVS 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT+ A++ VESE+ L E+++L A+++GHE+M++A++AI E V +W VK+
Sbjct: 181 GTDSAVLMVESEADVLSEEVMLGAVVYGHEQMQVAVSAIKEFKAEVNTPSWDWVAPVKNA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L++KI +SE ++ +AYQI K +R K I + +L+ EN +D+ + + +D
Sbjct: 241 ELLAKIAELSEAQVNEAYQITEKAVRYEKIKEIRSSVLEALLA-ENADVDVQEAKDLFHD 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
LE ++R +I D RID R IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 300 LEKTVVRGRITDGNPRIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQ 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q++D LMG+ TD FMLHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+
Sbjct: 360 RDAQRLDTLMGDKTDPFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVMPSLE 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GEK V+LS
Sbjct: 420 EFPYAVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEKFVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK ++IL M
Sbjct: 480 DILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEIMQIALNQAKAARTHILSVMDE 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ ++++S+FAPR+ T+K+ KIRD+IGKGG+TIR LTEETGT I+I D+G + IA+
Sbjct: 540 AIGGHRDDISEFAPRIHTMKVSQDKIRDIIGKGGATIRQLTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ ++A RI+ LT +++G +YTG V+R+ DFGA + +L GKDGL+HISQIS +RV
Sbjct: 600 TSGEQAEDAINRIKALTAEIEVGTLYTGKVVRIVDFGAFVNVLPGKDGLVHISQISEERV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
N +++ L E Q+V+VKVL +D +GR++LS+
Sbjct: 660 NNVSEVLTEGQEVKVKVLEVDRQGRVRLSI 689
>UNIPROTKB|P05055 [details] [associations]
symbol:pnp "polynucleotide phosphorylase monomer"
species:83333 "Escherichia coli K-12" [GO:0006402 "mRNA catabolic
process" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0035438 "cyclic-di-GMP binding" evidence=IDA] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA;IDA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA;IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0006950 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666 EMBL:J02638
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS BRENDA:2.7.7.8 ProtClustDB:PRK11824
EMBL:X00761 EMBL:M14425 PIR:H65106 RefSeq:NP_417633.4
RefSeq:YP_491351.1 PDB:1SRO PDB:3CDI PDB:3CDJ PDB:3H1C PDBsum:1SRO
PDBsum:3CDI PDBsum:3CDJ PDBsum:3H1C ProteinModelPortal:P05055
SMR:P05055 DIP:DIP-10522N IntAct:P05055 MINT:MINT-244786
PhosSite:P0810422 SWISS-2DPAGE:P05055 PaxDb:P05055 PRIDE:P05055
EnsemblBacteria:EBESCT00000001884 EnsemblBacteria:EBESCT00000002008
EnsemblBacteria:EBESCT00000002009 EnsemblBacteria:EBESCT00000002010
EnsemblBacteria:EBESCT00000015515 GeneID:12933437 GeneID:947672
KEGG:ecj:Y75_p3086 KEGG:eco:b3164 PATRIC:32121746 EchoBASE:EB0736
EcoGene:EG10743 BioCyc:EcoCyc:EG10743-MONOMER
BioCyc:ECOL316407:JW5851-MONOMER BioCyc:MetaCyc:EG10743-MONOMER
EvolutionaryTrace:P05055 Genevestigator:P05055 Uniprot:P05055
Length = 711
Score = 1986 (704.2 bits), Expect = 2.6e-205, P = 2.6e-205
Identities = 379/690 (54%), Positives = 529/690 (76%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+ N I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 363
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA-EDETLDENELGEILHA 299
Query: 364 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 423
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 543
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599
Query: 664 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 723
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659
Query: 724 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689
>TIGR_CMR|SO_1209 [details] [associations]
symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
Length = 699
Score = 1940 (688.0 bits), Expect = 2.0e-200, P = 2.0e-200
Identities = 375/689 (54%), Positives = 520/689 (75%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N I+KSF+YG + +++E G IARQA ++VL S+ DT +L TVV K+ + +FFPLTV+
Sbjct: 2 NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVN 61
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP G+ NE+Q+++ V+SV+P
Sbjct: 62 YQEKTYAAGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 121
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT 245
+I+PDI S+IG S AL+IS +PF GPLG A+VGYI+G+Y+LNPT +Q+ S L+L+VAGT
Sbjct: 122 EIEPDIISMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAGT 181
Query: 246 EKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTL 305
E A++ VESE++ LPE+++L ++++GH++ ++ I AI E G+ +W V+D+ L
Sbjct: 182 ESAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPVEDEAL 241
Query: 306 ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLE 365
+++I ++E +AYQI+ KQ R + +L+ N +D+ +++ +L LE
Sbjct: 242 VAQIKELAEAGFIEAYQIQVKQERYAQVAVVKAAAKEALLA-ANPDVDLREVDNLLGSLE 300
Query: 366 SKIIRKQILDKGL-RIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR 424
K++R +IL +G+ RID R + +R +S+ G+LPRTHGS+LFTRG+TQALV TLGT R
Sbjct: 301 KKVVRGRIL-RGMPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTER 359
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D QKID++MGE T+ FMLHYN PP++ G+ G +G PKRREIGHG+LA R + V+P+ +
Sbjct: 360 DAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEE 419
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSD 544
F YS+R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LSD
Sbjct: 420 FPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSD 479
Query: 545 ILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTE 604
ILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I++IAL +A +IL M
Sbjct: 480 ILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQA 539
Query: 605 VPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASF 664
+ + ++S APR+ TIKI+P KIRDVIGKGG+ IR LTEETGT I++ D+G + IAS
Sbjct: 540 IGSHRADISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASS 599
Query: 665 NSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVN 724
N + +EA RRIE++T V++G++Y G V+R+ DFGA + IL GKDGL+HISQIS +RV
Sbjct: 600 NGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVA 659
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
++D L+ NQ+V VKV+ +D +GR++LS+
Sbjct: 660 NVSDHLELNQEVTVKVMEVDRQGRVRLSI 688
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 1928 (683.7 bits), Expect = 3.6e-199, P = 3.6e-199
Identities = 373/691 (53%), Positives = 512/691 (74%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLA-ENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 1928 (683.7 bits), Expect = 3.6e-199, P = 3.6e-199
Identities = 373/691 (53%), Positives = 512/691 (74%)
Query: 64 LFNK-IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
+F K ++K+F+YG++ +++E G +ARQAT++V+ +++DT + +VV K+ +FFPL
Sbjct: 1 MFEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPL 60
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TV+Y E+ YAAG+IPG FFKREG+PSE ET+I+RLIDRPIRPLFP+G+ NE+Q++ V+S
Sbjct: 61 TVNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVS 120
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
VNP + PDI S+IG S AL+IS LPF GP+G A+VG+IDG+ +LNP+ ++LK+S LDL+V
Sbjct: 121 VNPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVV 180
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
AGT+ A++ VESE++ L E+ +L A++FGH++ + I AINE V W ++
Sbjct: 181 AGTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAEN 240
Query: 303 KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L +K+ ++E ++ +AYQI K R IS ++ ++L+ EN +D +I+ I +
Sbjct: 241 TELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLA-ENEALDTKEIHTIFH 299
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
DLE ++R+ I+ RID R + +R + +RTG+LPRTHGS+LFTRG+TQALV ATLGT
Sbjct: 300 DLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGT 359
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L GE D F+LHYN PP+ G+ G +G PKRREIGHGRLAKR + V+P+
Sbjct: 360 QRDAQIIDELTGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSP 419
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+ V+L
Sbjct: 420 EEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+QIAL +AK +IL M
Sbjct: 480 SDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMD 539
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ++++S+FAPR+ T+KI KI+DVIGKGG+ IR LTEETGT I+I D+G I IA
Sbjct: 540 QAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIA 599
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + +EA RRI+++T V++G +YTG V RL DFGA + IL GKDGL+HISQI+ KR
Sbjct: 600 ATDGDQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKR 659
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V ++D+L E Q+V+VKVL ID +GR++LSM
Sbjct: 660 VEKVSDYLTEGQEVQVKVLEIDRQGRVRLSM 690
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 1894 (671.8 bits), Expect = 1.5e-195, P = 1.5e-195
Identities = 366/691 (52%), Positives = 507/691 (73%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
NKI K+F+YG ++++ E GE+ARQAT +V+V + DTV+L +VV+ K+ +FFPLTV+
Sbjct: 2 NKIRKTFQYGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVN 61
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNP 185
Y EK YAAG+IPG +FKREG+P+E+ET+ SRLIDRP+RPLFP+G+ NE+Q++ VLSV+
Sbjct: 62 YQEKTYAAGKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDS 121
Query: 186 QIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT 245
++ DI +I+G S A+ +S +PF G LG A+VGY G+Y+LNP+ ++LK S LDL+VAGT
Sbjct: 122 KVPTDIPAILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGT 181
Query: 246 EKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTL 305
A++ VESE+++LPE ++L A++ GH+ M++AI AI E +Q G K W+P + L
Sbjct: 182 RDAVLMVESEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTAL 241
Query: 306 ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI---DNENLTIDINDINCILY 362
++ SE ++KAYQI+ K R + I + + + E ++ +++ I +
Sbjct: 242 EKWVVEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEENAVNEHELAVIFH 301
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
+LE +I+R+QIL RID R +RPI+++ G+LPR+HGS+LFTRG+TQALVV TLGT
Sbjct: 302 ELERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGT 361
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G+ + F+ HYN PPF G++G + PKRREIGHGRLAKRA++PV+P
Sbjct: 362 ERDAQSIDDLDGDRQEEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTL 421
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+KF Y IR+VSEI ESNGSSSMASVCG LAL+DAGVP VAGIAMGLIK+ +K +L
Sbjct: 422 DKFPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVL 481
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT NG+TALQMDIKI GIT +I++ AL +AK+G +IL M
Sbjct: 482 SDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMN 541
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ K ++++S AP+ +T+KI+P KIRDVIGKGG IR +TE T IDI+D+G I IA
Sbjct: 542 KVLDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITEATNCAIDISDDGTIKIA 601
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + G+ AKRRIE+LT V++GKVY G V+++ DFGA ++IL GL+HISQI+ +R
Sbjct: 602 AHTTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQER 661
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
V + D+L+E Q +RVKV+ ID +GR++LSM
Sbjct: 662 VENVRDYLEEGQVIRVKVIEIDRQGRVRLSM 692
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 1882 (667.6 bits), Expect = 2.7e-194, P = 2.7e-194
Identities = 378/691 (54%), Positives = 499/691 (72%)
Query: 68 IIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 127
IIK F+ G + +++E G IARQA +VL SI DT +L TVV ++ +FFPLTV+Y
Sbjct: 4 IIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVNYQ 63
Query: 128 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 187
E+ YAAGRIPG F KREG+P++ ET+I+RLIDRPIRPLFP G++NE+Q++ V+SVNP+I
Sbjct: 64 ERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNPEI 123
Query: 188 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 247
PD+ ++IG S AL+IS +PF GP+G +VGYIDG+Y+LNPT ++L++S LDL+VAGT+
Sbjct: 124 QPDMVALIGTSAALAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLDLVVAGTDN 183
Query: 248 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 307
A++ VESE+ L EDI+L A+++GHE+ + I AI E G+ +W K+ +L
Sbjct: 184 AVLMVESEADVLAEDIMLGAVVYGHEQAQAIITAIKEFKAEAGKPTWDWTAPAKNVSLEE 243
Query: 308 KIINISEHKIRKAYQIKNKQIRDLTFKNISKD-----IYSSLIDNENLTIDINDINCILY 362
K+ +I+ K+ +AY+I +K R ++KD + S L + E+L D +I I
Sbjct: 244 KVASIAADKVGEAYRITDKVARKEAL-GVAKDEVVAVLTSELAEGESL--DKQEIGKIFG 300
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE KI+R +I RID R + IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 301 SLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT 360
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
RD Q ID L G + FML+YN PPF G+ G +G PKRREIGHG LAKR + V+P
Sbjct: 361 ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTL 420
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
+F YSIR+VSEITESNGSSSMASVCG LAL++AGVPI VAGIAMGL+K+ +K V+L
Sbjct: 421 TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVL 480
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK +ILE M
Sbjct: 481 SDILGDEDHLGDMDFKVAGTAGGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMD 540
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ ELS+FAPR+ T+KI KI +VIGKGG+TIR LTEETGT I+I D+G I IA
Sbjct: 541 KAISAPSEELSQFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGTTIEIGDDGTIKIA 600
Query: 663 SFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKR 722
+ + S A RIE+LT +++G +Y G V+R+ DFGA + IL GKDGL+HISQIS++R
Sbjct: 601 ATDGESAANAISRIEQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTER 660
Query: 723 VNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
VN +TD L E Q+V+VKVL +D +GR++LS+
Sbjct: 661 VNNVTDHLSEGQEVKVKVLEVDRQGRVRLSI 691
>UNIPROTKB|Q0BWM9 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_762114.1 ProteinModelPortal:Q0BWM9
STRING:Q0BWM9 GeneID:4288000 KEGG:hne:HNE_3441 PATRIC:32219759
BioCyc:HNEP228405:GI69-3443-MONOMER Uniprot:Q0BWM9
Length = 713
Score = 1652 (586.6 bits), Expect = 6.4e-170, P = 6.4e-170
Identities = 331/694 (47%), Positives = 474/694 (68%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FNK S ++ ++IE G++ARQA +V+V DT++LAT V K+ +FFPLT
Sbjct: 1 MFNKQSVSLEWAGRTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V+Y EK +A+GRIPG FFKREG+P+E+ET+ SRLIDRPIRPLF +G+ +E+Q+VV LS
Sbjct: 61 VNYQEKYFASGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSY 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 243
+ + D DI +++G S AL +S PF+GP+G A+VGY DG+YI+NPT +L++S LDL+VA
Sbjct: 121 DLENDADIIALVGASAALVLSGAPFMGPIGAARVGYKDGQYIINPTIAELEESELDLVVA 180
Query: 244 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 303
GT A++ VES++ +L ED++L A++ GH+ M+ I+AI L + ++ ++P
Sbjct: 181 GTTDAVMMVESQAAELSEDVMLGAVVAGHDAMQPVIDAIIALAEKAAKEPFAYEPPDHSA 240
Query: 304 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN----LTIDINDINC 359
L S I + + KAY+I K R ++L+ + +T ++
Sbjct: 241 ALKSVIDTVGAD-LSKAYKITAKGERYAAIGAAKDKAKAALLGTDEAPGVMTPEV--FKT 297
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
+ + E+ ++R IL G RID R ++ IRPI G LPRTHGSSLFTRG+TQA+ VAT
Sbjct: 298 VFKEAEASVVRGDILKTGQRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVAT 357
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
LGTS DEQ ID L G + FMLHYN PP++ G+ GR+G RREIGHG+LA RAL VL
Sbjct: 358 LGTSDDEQYIDGLDGTKKEKFMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALKAVL 417
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P + F Y+IR+VSEITESNGSSSMA+VCG LA++DAGVP++ V+GIAMGLI +G +
Sbjct: 418 PKHEDFPYTIRMVSEITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEF 477
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+LSDILGDED GDMDFKVAGT NG+T+LQMDIK+ GIT DI+ AL +AK G +IL
Sbjct: 478 AVLSDILGDEDHLGDMDFKVAGTENGVTSLQMDIKVAGITKDIMGKALEQAKGGRMHILG 537
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
+M + + +LS+ AP++ IK+ KIRDVIG GG IR + +ETG +++I+D+G +
Sbjct: 538 EMGKALTASRGQLSENAPQMEIIKVPTDKIRDVIGSGGKVIRGIVDETGAKVNIDDDGTV 597
Query: 660 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 719
I++ + S A + I+ +T ++G++Y G V+ + DFG + KDGL+H+SQ++
Sbjct: 598 QISAMDRKSIDAAIKMIKGITAEAEVGEIYEGKVVSMKDFGIFVNFFGPKDGLVHVSQMA 657
Query: 720 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+KR+ + +KE KV VK++G D+RG+++LSM
Sbjct: 658 NKRIGHPKEMVKEGDKVWVKLMGFDERGKVRLSM 691
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 1645 (584.1 bits), Expect = 3.6e-169, P = 3.6e-169
Identities = 339/681 (49%), Positives = 458/681 (67%)
Query: 73 KYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYA 132
++G I+I G+ A+QA+ +V+VS DTV+L T V+ K +FFPLTV+Y EKAYA
Sbjct: 9 EFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEKAYA 68
Query: 133 AGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIA 192
G+IPG FFKREG+PS+ ET+ SR IDRPIRPLFPE +LN+ QI+ V+S + DP I
Sbjct: 69 GGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDPGIL 128
Query: 193 SIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV 252
++IG S AL +S++PFLGP+ KVG +DG+++ NPT EQL+KS L+++VA + A+I V
Sbjct: 129 AMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRDAVIMV 188
Query: 253 ESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINI 312
E + + E +L AI FGH ++ I A +L + G K D+ L +++ ++
Sbjct: 189 EGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVDEALKTRVKDL 248
Query: 313 SEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLI-DNENLTIDINDINCILYDLESKIIRK 371
+ I++A +I KQ R I+ +L+ + E ++I L D E +++R+
Sbjct: 249 AYAGIKEAVRIVAKQERHNRIGEITAQTLETLLPEYEGRE---SEIKGFLGDFEYELVRE 305
Query: 372 QILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDA 431
I+ G RID R IRPISI +LPR HGS+LFTRG+TQALV +TLGTS DEQ+ID+
Sbjct: 306 HIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDS 365
Query: 432 LMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRL 491
L GE F+LHYN PPF+ G+ P RREIGHG LA+RAL V+P + F Y+IR+
Sbjct: 366 LYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYTIRI 425
Query: 492 VSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDR 551
VS+I ESNGSSSMA+VCGG LA++DAGVPI VAGIAMGLIK+GE + ILSDILGDED
Sbjct: 426 VSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSDILGDEDH 485
Query: 552 CGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNE 611
GDMDFKVAGT G+TA+QMDIKI G+T +I++ AL +A+ G +IL KM + + +
Sbjct: 486 LGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAAPRTD 545
Query: 612 LSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQE 671
LS +APR+ TI + KIRDVIG GG IR +TE TG IDI D G I IAS + + +
Sbjct: 546 LSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGVSIDIEDSGRINIASTSKEACDK 605
Query: 672 AKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLK 731
A + I LT + GK+Y G V ++ DFGA + I G DGL+HIS++ ++RV +TD L
Sbjct: 606 AIKMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTDVLN 665
Query: 732 ENQKVRVKVLGIDDRGRIKLS 752
E KV VK +GID +G+IKLS
Sbjct: 666 EGDKVLVKCIGIDKQGKIKLS 686
>TIGR_CMR|SPO_3389 [details] [associations]
symbol:SPO_3389 "polyribonucleotide
nucleotidyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_168585.1
ProteinModelPortal:Q5LN23 GeneID:3195958 KEGG:sil:SPO3389
PATRIC:23380231 Uniprot:Q5LN23
Length = 714
Score = 1614 (573.2 bits), Expect = 6.8e-166, P = 6.8e-166
Identities = 333/697 (47%), Positives = 472/697 (67%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ KS ++G +++E G+IARQA SV+ ++ +T ++A V ++ +FFPLT
Sbjct: 1 MFDVTTKSMQWGEETLTLESGKIARQADGSVVATLGETRVMANVTFAREQKPGQDFFPLT 60
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V Y EK YAAG++PG FFKRE +P+E+ET+ +RLIDRPIRPLF G+ NE+ ++ VLS
Sbjct: 61 VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH 120
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLK------KSH 237
+ DPDI ++I S AL+IS +PF+GP+ +VGY+DG+Y+LNPT + ++ +
Sbjct: 121 DLVNDPDIVAMIAASAALTISGVPFMGPIAGCRVGYVDGEYVLNPTVDDMQDLRLNPEQR 180
Query: 238 LDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD 297
LDL+VAGT+ A++ VESE+ +L E +L A+ F H +++ ++ I + ++ ++
Sbjct: 181 LDLVVAGTKDAVMMVESEAYELTEAEMLGAVTFAHAQIQPVVDLIVSFAEQCAKEPFDFT 240
Query: 298 PIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDI 357
P L + + E ++R A+ I +KQ R + I ++L + E L D N +
Sbjct: 241 P-PDYSDLYAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKAALTE-EQLA-DGN-L 296
Query: 358 NCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVV 417
L LE+ I+R ++ G RID R +RPI TG+LPRTHGS+LFTRG+TQ LVV
Sbjct: 297 GSALKKLEAGILRGDVVKGGKRIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVV 356
Query: 418 ATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP 477
TLGT DEQ IDAL G F +F+LHYN PP++ G++GR+G P RREIGHG+LA RAL
Sbjct: 357 TTLGTGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQA 416
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLI-KDG 536
VLP F Y+IR+VSEITESNGSSSMASVCGG L+++DAGVP+ VAG+AMGLI +D
Sbjct: 417 VLPAPTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDD 476
Query: 537 EKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSY 596
+L+DILGDED GDMDFKVAGT NGIT+LQMDIK+ GIT +I++ AL +AK G +
Sbjct: 477 GSYAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALSQAKDGRMH 536
Query: 597 ILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE 656
IL +M + + S APR+ T++I KIR+VIG GG IR + E +G ++DIND+
Sbjct: 537 ILAEMNKALSGAA-DFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDD 595
Query: 657 GIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHIS 716
GII IAS N S ++A I + + G+VYTG V+++ DFGA + +DGL+H+S
Sbjct: 596 GIIKIASPNGDSIKKAYDMIWSIVAEPEEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVS 655
Query: 717 QISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
QI ++R+N +D LKE Q+V+VK+LG DDRG+++LSM
Sbjct: 656 QIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSM 692
>TIGR_CMR|CHY_1758 [details] [associations]
symbol:CHY_1758 "polyribonucleotide
nucleotidyltransferase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006401 "RNA
catabolic process" evidence=ISS] [GO:0006402 "mRNA catabolic
process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824
RefSeq:YP_360578.1 ProteinModelPortal:Q3ABA6 STRING:Q3ABA6
GeneID:3727728 KEGG:chy:CHY_1758 PATRIC:21276631
BioCyc:CHYD246194:GJCN-1757-MONOMER Uniprot:Q3ABA6
Length = 731
Score = 1613 (572.9 bits), Expect = 8.7e-166, P = 8.7e-166
Identities = 331/692 (47%), Positives = 468/692 (67%)
Query: 79 ISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPG 138
+ + G++A QA+ SVLVS DTV+L T K+P +FFPLTVDY E+ YA G+IPG
Sbjct: 19 LKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVDYEERFYAVGKIPG 78
Query: 139 SFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVS 198
F KREG+PSE+ + +RLIDRPIRPLFP+G+ N++ IV VLSVN P+IA++ G S
Sbjct: 79 GFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPPEIAAMNGAS 138
Query: 199 TALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQ 258
AL++S LPFLGP+G VG ++ + ++NPT EQ +KS L L+VAGT A++ VE+ +++
Sbjct: 139 AALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVVAGTRDAVMMVEAGAQE 198
Query: 259 LPEDIILNAIIFGHEKMKIAINAINELVQN---VGQKKVNWDPIVKDKTLISKIIN---- 311
+PE+I++ AI GHE++K + I E + +G K + +V++K + + +
Sbjct: 199 VPEEIMIEAITRGHEEVKKIVAFIEEFREEALKLGLAKEKMEVVVEEKAELKEAVTAEAY 258
Query: 312 -ISEHKIRKAYQIK-NKQIRDLTFKNISKDIYSSLIDN---ENLTIDINDINCILYDLES 366
+ + I K K NKQ RD +N+ K++ + ++ E LTI IL ++
Sbjct: 259 PLLKEAIEKIIAEKFNKQERDEYLENLKKELTTKFLETYPEEELTI-----KGILDSIQK 313
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
+I+R++IL +G+RID R +++RPI G+LPRTHGS LFTRG TQ L + TLG D
Sbjct: 314 EIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDV 373
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q +D L E + FM HYN PP++ G++ + P RREIGHG LA+RAL PV+P F
Sbjct: 374 QILDDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIPPEEVFP 433
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
Y+IR+VSE+ ESNGS+SM SVCG LAL+DAGVPI VAG+AMGLIK+G++V IL+DI
Sbjct: 434 YTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVAILTDIQ 493
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
G ED GDMDFKVAGT +GITALQMDIKI G+T DI+ AL +A++G +IL KM +
Sbjct: 494 GIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDILTKALAQAREGRMHILGKMLEVIS 553
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ + ELS +APR+I +DP KIRD+IG GG I+ + +ETG +IDI D+G I IA+ +
Sbjct: 554 EPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKKIIDETGVKIDIEDDGRIFIAAVDK 613
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRI------LSGKDGLLHISQISS 720
+G++A IE LT+ +++GKVY G V R+ DFGA + + L GK+GL+HISQ++
Sbjct: 614 EAGEKALNIIENLTKEIEVGKVYLGKVTRIADFGAFVEVVPGVLGLPGKEGLVHISQLAH 673
Query: 721 KRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
RV + D +KE ++ VK +G D++GR+KLS
Sbjct: 674 SRVKRVEDVVKEGDQILVKAIGYDNQGRLKLS 705
>UNIPROTKB|P50849 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
Length = 705
Score = 1581 (561.6 bits), Expect = 2.2e-162, P = 2.2e-162
Identities = 317/686 (46%), Positives = 455/686 (66%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K + + + +++E G++A+QA +V++ DT +L+T + K+P +FFPLTV+Y
Sbjct: 5 KHVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP-KPLDFFPLTVNY 63
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
E+ YA G+IPG F KREG+PSE+ + SRLIDRPIRPLF +G+ NE+Q++ V+SV+
Sbjct: 64 EERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQN 123
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
++A++ G S ALS+S++PF GP+ VG ID ++I+NPT +QL+KS ++L+VAGT+
Sbjct: 124 CSSEMAAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTK 183
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI VE+ + ++PE+I+L AI+FGHE++K I E+V VG++K D+ L
Sbjct: 184 DAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELN 243
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
K+ ++E + KA Q+ K R+ + + + D E+ I + IL L
Sbjct: 244 EKVKALAEEDLLKAIQVHEKHAREDAINEVKNAVVAKFEDEEHDEDTIKQVKQILSKLVK 303
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
+R+ I ++ +R D RGV+ IRP+S G+LPRTHGS LFTRG TQAL V TLG D
Sbjct: 304 NEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDV 363
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q +D L E + FM HYN P F+ G+ G + P RREIGHG L +RAL PV+P+ F
Sbjct: 364 QILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFP 423
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
Y++RLVSE+ ESNGS+S AS+C LA++DAGVPI VAGIAMGL+K GE +L+DI
Sbjct: 424 YTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTDIQ 483
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
G ED GDMDFKVAGT G+TALQMDIKI G++ +I++ AL +AKKG IL M +
Sbjct: 484 GMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLS 543
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ + ELS++AP+++T+ I+P KIRDVIG G I + EETG +IDI +G I I+S +
Sbjct: 544 ESRKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDE 603
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
Q+AK+ IE L V++G++Y G V R+ FGA + I SGKDGL+HIS+++ +RV +
Sbjct: 604 SGNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKV 663
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLS 752
D +K ++ VKV ID +GR+ LS
Sbjct: 664 EDVVKIGDEILVKVTEIDKQGRVNLS 689
>TIGR_CMR|BA_3944 [details] [associations]
symbol:BA_3944 "polyribonucleotide nucleotidyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:NP_846188.1 RefSeq:YP_020583.1
RefSeq:YP_029909.1 ProteinModelPortal:Q81WM8 IntAct:Q81WM8
DNASU:1086877 EnsemblBacteria:EBBACT00000009810
EnsemblBacteria:EBBACT00000017999 EnsemblBacteria:EBBACT00000024497
GeneID:1086877 GeneID:2814451 GeneID:2852317 KEGG:ban:BA_3944
KEGG:bar:GBAA_3944 KEGG:bat:BAS3658
BioCyc:BANT260799:GJAJ-3716-MONOMER
BioCyc:BANT261594:GJ7F-3832-MONOMER Uniprot:Q81WM8
Length = 712
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 313/686 (45%), Positives = 451/686 (65%)
Query: 67 KIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDY 126
K + S ++++E G++A+QA +VLV DT +L+T + K+ + +FFPLTV+Y
Sbjct: 5 KQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNV-DFFPLTVNY 63
Query: 127 IEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQ 186
E+ YA G+IPG F KREG+PSE+ + SRLIDRPIRPLF +G+ NE+Q+V V+SV+
Sbjct: 64 EERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQD 123
Query: 187 IDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTE 246
++A+++G S ALSIS++PF GP+ A VG I+G++++NPT EQ ++S + L+VAGT+
Sbjct: 124 CSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTK 183
Query: 247 KAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI 306
AI VE+ + Q+PE+ +L AI+FGH+++K I E+VQ VG++K D L
Sbjct: 184 DAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLN 243
Query: 307 SKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
+ ++E + A Q+ K R+ + K + E + +N ILY +
Sbjct: 244 QAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVK 303
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDE 426
+ +R+ I + +R D R ++IRP++ GIL RTHGS LFTRG TQAL + TLG D
Sbjct: 304 EEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDV 363
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
Q +D L E + FM HYN P F+ G+ + P RREIGHG L +RAL PV+P+ F
Sbjct: 364 QILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFP 423
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
Y++RLVSE+ ESNGS+S AS+CG LA++DAGVP+ VAGIAMGL+K GE ILSDI
Sbjct: 424 YTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQ 483
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
G ED GDMDFKVAGT +G+TALQMDIKI G++ +I++ AL +AK G +IL M + +
Sbjct: 484 GMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIA 543
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
+ + ELS +AP++IT+ I+P KIRDVIG G I + EETG +IDI +G + I+S N
Sbjct: 544 EPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSINQ 603
Query: 667 VSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNII 726
+AK+ IE + VQ+G++Y G V R+ FGA + + SGKDGL+HIS+++ +RV +
Sbjct: 604 EMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKV 663
Query: 727 TDFLKENQKVRVKVLGIDDRGRIKLS 752
D +K + VKV+ ID +GR+ LS
Sbjct: 664 EDVVKIGDVITVKVIEIDKQGRVNLS 689
>TIGR_CMR|ECH_0726 [details] [associations]
symbol:ECH_0726 "polyribonucleotide
nucleotidyltransferase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_507529.1
ProteinModelPortal:Q2GGA4 STRING:Q2GGA4 GeneID:3927271
KEGG:ech:ECH_0726 PATRIC:20576896
BioCyc:ECHA205920:GJNR-729-MONOMER Uniprot:Q2GGA4
Length = 796
Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
Identities = 322/696 (46%), Positives = 460/696 (66%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+FN I +S ++G + +E G+IARQA+ +V+VS T +LATVV+ K +F PLT
Sbjct: 1 MFNLIRRSAEWGGKTLVLESGKIARQASGAVMVSYAGTTVLATVVTGKTKEPV-DFLPLT 59
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V ++ K+YA G+IPG F KREGKPS+RET+ISRLIDR IRPLFP G+ +EI IV +LS
Sbjct: 60 VQFVAKSYAVGKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSY 119
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI--DGKYILNPTTEQLKKSHLDLL 241
+ P++ +++G + ALSIS +PF G + A+VGY+ +GKY+LN + +++ S LDL
Sbjct: 120 DTVTPPEVTALVGATAALSISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDLF 179
Query: 242 VAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVK 301
++G E +++ VESE+ +L E +L AI FGH+ + IN I E GQ +++ P
Sbjct: 180 LSGNEDSVLMVESEASELSESQMLGAITFGHQHCQEVINLIKEFSHESGQTPIDFIP--H 237
Query: 302 D-KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENL-TIDINDINC 359
D +L+S I + + AY K+ R L + + + S + D + ++ +D +
Sbjct: 238 DISSLVSDIESSYKEDFSLAYSNTIKKERVLKLEELRGKVLSEVADKYSAGDVECSDQDI 297
Query: 360 I--LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVV 417
+ L E ++R +I+D RID R ++IR I I +LP+ HGS+LFTRG+TQALVV
Sbjct: 298 VTALKTFERSLVRSKIIDTSSRIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVV 357
Query: 418 ATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLP 477
LGT +DEQ +D L G+ ++F+LHYN PP+A G+ + P RREIGHG+LA RA+
Sbjct: 358 TALGTPQDEQIVDDLDGDRRENFLLHYNFPPYAVGESAALRAPGRREIGHGKLAWRAIRY 417
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGE 537
VLP + F Y+IR+VSEITES+GSSSMA+VCG LAL+D GVPI VAGIAMGLIK+ +
Sbjct: 418 VLPEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDD 477
Query: 538 KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
+ +ILSDILGDED GDMDFKVAGT G+TALQMD+KI GI DII+ AL +AK G +I
Sbjct: 478 RFIILSDILGDEDHLGDMDFKVAGTAEGVTALQMDMKISGIDIDIIEKALLQAKDGRMHI 537
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
L KM + + +N + APR+ +I I+ KIR+VIG GG IR + E+TG +I+I +G
Sbjct: 538 LSKMNAVIQESRNRIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICEKTGAKIEIIQDG 597
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQ 717
+ I + N+ + + AK I + +IGKV+ G V+ + FGA + L GK GL+HIS+
Sbjct: 598 TVMIYAVNNEAVEYAKSMIMDIVTEPEIGKVFEGTVVEIMKFGAFVSFLGGKKGLVHISE 657
Query: 718 ISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
I ++ ++ + + N KV+V V+GID R I+LSM
Sbjct: 658 IRNEHISSVGSVISLNDKVKVLVIGID-REHIQLSM 692
>TIGR_CMR|DET_0970 [details] [associations]
symbol:DET_0970 "polyribonucleotide
nucleotidyltransferase" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
HSSP:Q91WJ8 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_181693.1 ProteinModelPortal:Q3Z7V6
SMR:Q3Z7V6 STRING:Q3Z7V6 GeneID:3229678 KEGG:det:DET0970
PATRIC:21608989 BioCyc:DETH243164:GJNF-971-MONOMER Uniprot:Q3Z7V6
Length = 720
Score = 1533 (544.7 bits), Expect = 2.6e-157, P = 2.6e-157
Identities = 297/680 (43%), Positives = 460/680 (67%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
G K++IE G++AR A ++V + DT +L T+ + K P +F PLT+DY E+ YAAG
Sbjct: 12 GGRKLTIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLTIDYEERMYAAG 71
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
+IPG F +REG+PSE+ + RL DRP+RPL P+ + NE+QI++ V++ + + D DI +
Sbjct: 72 KIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIASDKENDADIWGV 131
Query: 195 IGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVES 254
+G ST L++S++P+ GP+G ++VGY +G+++LNPT QL++S +DL+V T KA++ +E+
Sbjct: 132 VGASTVLTMSQIPYEGPVGASRVGYTNGEFVLNPTFAQLEQSQMDLVVVSTRKAVVMIEA 191
Query: 255 ESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISE 314
SK++PED+++ AI F H+ + I+ +E+ +G++K+ + + + + + +
Sbjct: 192 GSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPEEVKAAVAAFVK 251
Query: 315 HKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLE-SKIIRKQI 373
++ +A ++K +R+ + + ++ +L + T DI YD E K IR I
Sbjct: 252 GRVNEALSHQDKTLRENAVEALQSELVEALAE----TYAEGDI-LAAYDKEIKKAIRSTI 306
Query: 374 LDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALM 433
L+K +R++ RG+ +R + TGILPR HGS+LFTRGDTQ + + TLG+ ++ Q++D L
Sbjct: 307 LEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQEAQQLDGLS 366
Query: 434 GEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVS 493
E T FMLHYN PF+TG++ R G P RREIGHG LA+RAL+PVLP +F Y+IR+V+
Sbjct: 367 AEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEEFPYTIRMVA 426
Query: 494 EITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK-DGEKVVILSDILGDEDRC 552
++ S+GS+SM SVC L+L+DAGVP+ + VAGI++GLI + + ++DI G ED
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTITDIEGIEDNY 486
Query: 553 GDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNEL 612
GDMDFKVAGT +GITA+Q+D+K+ GI++D+I+ A+Y+AK+ ILE M + + K EL
Sbjct: 487 GDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYTILEVMDKALAQPKTEL 546
Query: 613 SKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEA 672
S +APR+ I IDPSKI VIG GG TIR++ E+T T +DI ++G + I + + S Q+A
Sbjct: 547 SPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGATDEASAQKA 606
Query: 673 KRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKE 732
+ IE LT+ V+ G VYTG V R+ FGA + IL GK+G++HIS+++ RV + D +K
Sbjct: 607 IKIIEDLTKDVEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRVEKVEDVVKV 666
Query: 733 NQKVRVKVLGIDDRGRIKLS 752
++ VKV ID +GRI LS
Sbjct: 667 GDEITVKVTEIDSQGRINLS 686
>UNIPROTKB|Q2GJV5 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003729
GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
Uniprot:Q2GJV5
Length = 838
Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
Identities = 307/699 (43%), Positives = 453/699 (64%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ K ++G ++IE G+IARQA +V+V T +LATVVS K + +F PLT
Sbjct: 1 MFDITRKCVEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKSKEAV-DFLPLT 59
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V ++ K+YA G+IPG FFKREGKPS+RET+ISR+IDR IRPLFP G+ +E+ +V +LS
Sbjct: 60 VQFLAKSYAVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSY 119
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI--DGKYILNPTTEQLKKSHLDLL 241
+ P+ ++IG S AL+IS +PF P+ A++GYI +G+YILNP+ ++L S LD+
Sbjct: 120 DASSPPETVALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMF 179
Query: 242 VAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVK 301
A T+ +I+ VESE+ +L E +L A+ FGHE + I I E + +K + +
Sbjct: 180 YARTDTSILMVESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEA-RKCAPAEFVPC 238
Query: 302 D-KTLISKIINISEHKIRKAYQIKNKQIR----DLTFKNISKDI-YSSLIDNENLTIDI- 354
D T+I I + + + AY K K+ R D ++++D+ L ++E + I
Sbjct: 239 DLSTIIDSIGSDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYIA 298
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
DI + E ++R+++L+ RID R + IR I I ++ + HGS+LFTRGDTQA
Sbjct: 299 QDIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQA 358
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
LV+ LGT +DEQ +D G+ + F+LHYN PP+A G+ + P RREIGHG+LA RA
Sbjct: 359 LVITALGTPQDEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRA 418
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
+ PVLP+ F Y+IR+VSEITES+GSSSMA+VCG LAL+D GVP+ VAGIAMGLIK
Sbjct: 419 IHPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIK 478
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+G++ ILSDILGDED GDMDFKVAGT GITALQMD+K+ GI + ++ AL +AK+G
Sbjct: 479 EGDRYAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEGR 538
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+I+EKM + + + + + PR+ ++ ID KI++VIG GG +R + E+TG +I+I+
Sbjct: 539 FFIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEIS 598
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
+G + I + + + AK I + ++GK+Y+G V L +GA + L + GL+H
Sbjct: 599 QDGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSGEVCELAKYGAFVTFLGARKGLVH 658
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
IS+I ++ +N + D L KV+V V+ +D + I+LSM
Sbjct: 659 ISEIRNEHINAVADVLAVGDKVKVLVIDMD-KDHIQLSM 696
>TIGR_CMR|APH_0767 [details] [associations]
symbol:APH_0767 "polyribonucleotide
nucleotidyltransferase" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0003729 GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
Uniprot:Q2GJV5
Length = 838
Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
Identities = 307/699 (43%), Positives = 453/699 (64%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 123
+F+ K ++G ++IE G+IARQA +V+V T +LATVVS K + +F PLT
Sbjct: 1 MFDITRKCVEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQKSKEAV-DFLPLT 59
Query: 124 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 183
V ++ K+YA G+IPG FFKREGKPS+RET+ISR+IDR IRPLFP G+ +E+ +V +LS
Sbjct: 60 VQFLAKSYAVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSY 119
Query: 184 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYI--DGKYILNPTTEQLKKSHLDLL 241
+ P+ ++IG S AL+IS +PF P+ A++GYI +G+YILNP+ ++L S LD+
Sbjct: 120 DASSPPETVALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMF 179
Query: 242 VAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVK 301
A T+ +I+ VESE+ +L E +L A+ FGHE + I I E + +K + +
Sbjct: 180 YARTDTSILMVESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEA-RKCAPAEFVPC 238
Query: 302 D-KTLISKIINISEHKIRKAYQIKNKQIR----DLTFKNISKDI-YSSLIDNENLTIDI- 354
D T+I I + + + AY K K+ R D ++++D+ L ++E + I
Sbjct: 239 DLSTIIDSIGSDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYIA 298
Query: 355 NDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
DI + E ++R+++L+ RID R + IR I I ++ + HGS+LFTRGDTQA
Sbjct: 299 QDIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQA 358
Query: 415 LVVATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA 474
LV+ LGT +DEQ +D G+ + F+LHYN PP+A G+ + P RREIGHG+LA RA
Sbjct: 359 LVITALGTPQDEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRA 418
Query: 475 LLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
+ PVLP+ F Y+IR+VSEITES+GSSSMA+VCG LAL+D GVP+ VAGIAMGLIK
Sbjct: 419 IHPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIK 478
Query: 535 DGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGL 594
+G++ ILSDILGDED GDMDFKVAGT GITALQMD+K+ GI + ++ AL +AK+G
Sbjct: 479 EGDRYAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEGR 538
Query: 595 SYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN 654
+I+EKM + + + + + PR+ ++ ID KI++VIG GG +R + E+TG +I+I+
Sbjct: 539 FFIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEIS 598
Query: 655 DEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLH 714
+G + I + + + AK I + ++GK+Y+G V L +GA + L + GL+H
Sbjct: 599 QDGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSGEVCELAKYGAFVTFLGARKGLVH 658
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
IS+I ++ +N + D L KV+V V+ +D + I+LSM
Sbjct: 659 ISEIRNEHINAVADVLAVGDKVKVLVIDMD-KDHIQLSM 696
>TAIR|locus:2079429 [details] [associations]
symbol:RIF10 "AT3G03710" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=IGI]
[GO:0006401 "RNA catabolic process" evidence=IGI] [GO:0031425
"chloroplast RNA processing" evidence=IGI] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0010323 "negative regulation of isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=IMP] [GO:0015995 "chlorophyll biosynthetic process"
evidence=IMP] [GO:0016120 "carotene biosynthetic process"
evidence=IMP] [GO:0016123 "xanthophyll biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0009570 EMBL:CP002686 GO:GO:0006397
GO:GO:0003723 GO:GO:0006401 GO:GO:0008033 GO:GO:0006402
GO:GO:0016036 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC009540 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC009327
GO:GO:0016123 GO:GO:0006364 GO:GO:0015995 GO:GO:0000175
GO:GO:0016120 InterPro:IPR022967 SMART:SM00316 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AJ252123 EMBL:AF450480 IPI:IPI00534675
RefSeq:NP_187021.2 UniGene:At.26536 HSSP:Q53597
ProteinModelPortal:Q8GZQ3 SMR:Q8GZQ3 STRING:Q8GZQ3 PRIDE:Q8GZQ3
EnsemblPlants:AT3G03710.1 GeneID:821181 KEGG:ath:AT3G03710
GeneFarm:4127 TAIR:At3g03710 HOGENOM:HOG000218327 InParanoid:Q8GZQ3
KO:K00962 OMA:AQRIDNL PhylomeDB:Q8GZQ3 ProtClustDB:PLN00207
ArrayExpress:Q8GZQ3 Genevestigator:Q8GZQ3 GO:GO:0004654
GO:GO:0031425 GO:GO:0010323 Gene3D:1.10.10.400 PANTHER:PTHR11252
SUPFAM:SSF46915 TIGRFAMs:TIGR03591 Uniprot:Q8GZQ3
Length = 922
Score = 909 (325.0 bits), Expect = 3.1e-138, Sum P(2) = 3.1e-138
Identities = 186/408 (45%), Positives = 276/408 (67%)
Query: 356 DINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQAL 415
D+ + ++ SK++R++I++ G R D R +++IRPI+ R G+LPR HGS+LFTRG+TQAL
Sbjct: 424 DVKLVFKEVSSKLLRRRIVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQAL 483
Query: 416 VVATLGTSRDEQKIDALMG--EFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKR 473
V TLG + Q+ID L G E+ F L Y PP + G++GRIG P RREIGHG LA+R
Sbjct: 484 AVVTLGDKQMAQRIDNLEGSDEYK-RFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAER 542
Query: 474 ALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLI 533
AL +LP+++ F Y+IR+ S + ESNGSSSMASVCGGCLAL DAGVP+ VAGIAMG++
Sbjct: 543 ALETILPSDDDFPYTIRVESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMV 602
Query: 534 KDGEKV------VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIAL 587
D E+ +ILSDI G ED GDMDFKVAG +G+TA QMDIK+ GIT +I++ AL
Sbjct: 603 WDTEEFGGDGSPLILSDITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKAL 662
Query: 588 YKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEET 647
+AK G +IL +M P LSK+AP ++ +K+ PSK+ +IG GG ++++ EE+
Sbjct: 663 IQAKAGRRHILAEMAKCSPPPTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEES 722
Query: 648 GTQ-IDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLR-LFDFGAIIRI 705
G + ID+ D+G + I + + S + AK I LT +G +Y ++ + +GA + I
Sbjct: 723 GVEAIDMQDDGTVKIMAIDVASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEI 782
Query: 706 LSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
G++GL HIS++S++ + D K ++ VK++ ++++G+++LS+
Sbjct: 783 APGREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVNEKGQLRLSV 830
Score = 465 (168.7 bits), Expect = 3.1e-138, Sum P(2) = 3.1e-138
Identities = 111/336 (33%), Positives = 189/336 (56%)
Query: 61 GNFLF-NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNF 119
G+ F N + +G+ +I +E G + RQA+S+V V+ +T++ +V P+ +F
Sbjct: 80 GSLAFPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDF 139
Query: 120 FPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVY 179
PL V Y E+ A GR G FFKREG+ + E +I RLIDRP+RP P+G+ NE QI+ +
Sbjct: 140 LPLYVHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSW 199
Query: 180 VLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLD 239
VLS + PD ++ A+++SE+P + +VG I G++I+NPT +++++S LD
Sbjct: 200 VLSYDGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLD 259
Query: 240 LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPI 299
L +AGT+ AI+T+E S LPE+++L A+ G + ++ AI L + G+ K+ D I
Sbjct: 260 LFLAGTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGKPKM-LDAI 318
Query: 300 -VKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDIN 358
+ L + ++ ++ KA QIK+K R ++ + + + L + + ID
Sbjct: 319 RLPPPELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTE-KGYVIDEVAFG 377
Query: 359 CILYD---LESKIIRKQILDKGLRIDNRGVNDIRPI 391
I LE + ++++ +G +D V+ IRPI
Sbjct: 378 TIEAQPDLLEDEDEDEEVVPEG-EVDQGDVH-IRPI 411
Score = 38 (18.4 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 449 FATGDIGRIGVPKRREIGHGRLAKRALLP 477
+ GD + + + E G RL+ RALLP
Sbjct: 807 YKVGDRIDVKLIEVNEKGQLRLSVRALLP 835
>TIGR_CMR|NSE_0057 [details] [associations]
symbol:NSE_0057 "polyribonucleotide
nucleotidyltransferase" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_505958.1
ProteinModelPortal:Q2GEY8 STRING:Q2GEY8 GeneID:3931805
KEGG:nse:NSE_0057 PATRIC:22680229 BioCyc:NSEN222891:GHFU-94-MONOMER
Uniprot:Q2GEY8
Length = 757
Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
Identities = 293/698 (41%), Positives = 428/698 (61%)
Query: 71 SFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDP-----TSTYNFFPLTVD 125
S ++ + I+ GE+ARQA + VS TV+LA V KD TS + L +
Sbjct: 8 SMEWEGKSLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLSGLALVTN 67
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV-N 184
++ K+YA GRIP FFKREGK SERE + SR++DR +RPL E +NE+ IV +L+ N
Sbjct: 68 FLAKSYALGRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVCKLLAHGN 127
Query: 185 PQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAG 244
++ P+I ++I S AL +S +PF GP+ V + N E + L+L VA
Sbjct: 128 RKVLPEIPALIAASAALQLSGIPFSGPVIGVDVDMRGSEVTCNEIRET--EGGLELFVAC 185
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKT 304
TE++++ VE+E+ + E+ ++NA+ + K + INE V++V K + +K
Sbjct: 186 TEESVVMVEAEASEASEEEVVNALSEALKSAKPVFSFINEFVKSVTTVKPI-GVLYDNKE 244
Query: 305 LISKIINISEHKIRKAY--QIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
L K+ ++ Y +I +K+ R I D ++ L D+ +++ +
Sbjct: 245 LCEKVRAACSGQLESVYNERISSKEKRHNKLGQIYTDTFAQLSDDGYAE---SEVLFFIK 301
Query: 363 DLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGT 422
LE +I+RK +L++G+R D R + +IRPISI LP THGS+LFTRG TQ+LVVATLG+
Sbjct: 302 KLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGS 361
Query: 423 SRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+DEQ +D + GE +S +LHYN P+A G++G + P RREIGHGRLA +A+ VLP
Sbjct: 362 YQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGHGRLALKAVKAVLPGK 421
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVIL 542
F Y++RLVSEITES+GSSSMA+VCG LAL+D GVPI++HVAGIAMGLI DG + +L
Sbjct: 422 EVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGVRSAVL 481
Query: 543 SDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
SDI GDED GDMDFKVAGT NGI ALQMD+K+ GI+ I+ AL +A G +ILEKM+
Sbjct: 482 SDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRDALNQALAGRLHILEKME 541
Query: 603 TEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIA 662
+ K + L AP+++ KID + VIG GG TIR ++ +T +IDI+ + I
Sbjct: 542 HVIAKPRESLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDTSAKIDIDQNNYVYIM 601
Query: 663 SFNSVSGQEAKRRIEKLTES-------VQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
+ + EAK R++ + + ++IG++Y G ++ + DFG + + + ++GL+HI
Sbjct: 602 ADTEEALMEAKTRVDMASGASDSNVPQLKIGELYDGKIVSVVDFGLFVVLPNKQEGLVHI 661
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
S+IS RVN I E Q V V++ I G+IKL+M
Sbjct: 662 SEISKNRVNDIRADYTEGQAVTVRIKDIGSDGKIKLTM 699
>UNIPROTKB|O33325 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR014069 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0005886 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842580
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 PIR:F70883 RefSeq:NP_217299.1
RefSeq:NP_337358.1 RefSeq:YP_006516229.1 ProteinModelPortal:O33325
SMR:O33325 PRIDE:O33325 EnsemblBacteria:EBMYCT00000001176
EnsemblBacteria:EBMYCT00000071784 GeneID:13317568 GeneID:888467
GeneID:925429 KEGG:mtc:MT2853 KEGG:mtu:Rv2783c KEGG:mtv:RVBD_2783c
PATRIC:18128028 TubercuList:Rv2783c TIGRFAMs:TIGR02696
Uniprot:O33325
Length = 752
Score = 904 (323.3 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 211/530 (39%), Positives = 304/530 (57%)
Query: 245 TEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQK-KVNWD-PIVKD 302
TE + VE ++ E ++ + + A EL G+ K D P+ D
Sbjct: 210 TENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGKPTVDFPVFPD 269
Query: 303 --KTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDN-ENLTIDINDINC 359
+ + + +++ ++ A I K RD I + L D E ++
Sbjct: 270 YGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADTYEGRE---KEVGA 326
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
L L K++R++IL RID RG+ DIR +S ++PR HGS+LF RG+TQ L V T
Sbjct: 327 ALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTT 386
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 479
L + Q+ID+L E + +M HYN PPF+TG+ GR+G PKRREIGHG LA+RAL+PVL
Sbjct: 387 LDMIKMAQQIDSLGPETSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAERALVPVL 446
Query: 480 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 539
P+ +F Y+IR VSE SNGS+SM SVC LALL+AGVP+ VAGIAMGL+ D +V
Sbjct: 447 PSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQV 506
Query: 540 ------------VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIAL 587
V L+DILG ED GDMDFKVAGT + +TALQ+D K+ GI ++ AL
Sbjct: 507 EGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQVLAGAL 566
Query: 588 YKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEET 647
+AK ILE M + + +E+S +APR+ TIK+ KI +VIG G I +TEET
Sbjct: 567 EQAKDARLTILEVMAEAIDR-PDEMSPYAPRVTTIKVPVDKIGEVIGPKGKVINAITEET 625
Query: 648 GTQIDINDEGIITIASFNSVSGQEAKRRIEKLT--ESVQIGKVYTGIVLRLFDFGAIIRI 705
G QI I D+G + + + + S Q A +I + + +G+ + G V++ DFGA + +
Sbjct: 626 GAQISIEDDGTVFVGATDGPSAQAAIDKINAIANPQLPTVGERFLGTVVKTTDFGAFVSL 685
Query: 706 LSGKDGLLHISQISS-KRVNIITDFLKENQKVRVKVLGIDDRGRIKLSMI 754
L G+DGL+HIS++ KR+ + D + K+RV++ ID RG+I L ++
Sbjct: 686 LPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISLILV 735
Score = 398 (145.2 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 84/204 (41%), Positives = 129/204 (63%)
Query: 60 KGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSIED-TVILATVVSCKDPTSTYN 118
+G F I + +G+ I E G +A QA +V+ ++D ++L+ + K+P ++
Sbjct: 8 EGVFETTATIDNGSFGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFD 67
Query: 119 FFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVV 178
FFPLTVD E+ YAAGRIPGSFF+REG+PS + RLIDRP+RP F +G NEIQIVV
Sbjct: 68 FFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVV 127
Query: 179 YVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHL 238
+LS++P D+ +I S + + LPF GP+G +V IDG ++ PT +Q++++
Sbjct: 128 TILSLDPGDLYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVF 187
Query: 239 DLLVAGT----EKAIITVESESKQ 258
D++VAG + AI+ VE+E+ +
Sbjct: 188 DMVVAGRIVEGDVAIMMVEAEATE 211
>TAIR|locus:2222662 [details] [associations]
symbol:AT5G14580 "AT5G14580" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0000957 "mitochondrial RNA catabolic process"
evidence=IGI] [GO:0000963 "mitochondrial RNA processing"
evidence=IGI] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IGI] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005739 EMBL:CP002688
GO:GO:0006397 GO:GO:0003723 GO:GO:0008033 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0000963
GO:GO:0000175 InterPro:IPR022967 SMART:SM00316 EMBL:AL163792
HSSP:P05055 GO:GO:0000957 Pfam:PF03725 SUPFAM:SSF55666
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:Y14685
EMBL:Y14686 IPI:IPI00534639 PIR:T48631 RefSeq:NP_196962.1
UniGene:At.427 ProteinModelPortal:Q9S7G6 SMR:Q9S7G6 STRING:Q9S7G6
PRIDE:Q9S7G6 EnsemblPlants:AT5G14580.1 GeneID:831309
KEGG:ath:AT5G14580 GeneFarm:4118 TAIR:At5g14580 InParanoid:Q9S7G6
OMA:RDKTLMI PhylomeDB:Q9S7G6 ProtClustDB:CLSN2687232
Genevestigator:Q9S7G6 Uniprot:Q9S7G6
Length = 991
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 274/704 (38%), Positives = 430/704 (61%)
Query: 67 KIIKSFK----YGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPL 122
KI++SFK GS +S E G+IAR A SV++ +++T +L+TV +C S +F PL
Sbjct: 48 KILESFKEEFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTV-TCAKTDSPRDFLPL 106
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TVDY EK YA G IP ++ +REG P ERE + RLIDRPIRPLFP G+ +E+QI+ VLS
Sbjct: 107 TVDYQEKQYAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLS 166
Query: 183 VNPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLV 242
+ + DPDI + S AL +S++P+ GP+GV ++G I G++++NPT ++L S L+L+
Sbjct: 167 SDGKQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIY 226
Query: 243 AGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWD-PIVK 301
A T + ++ +S+++ E + A+ H + ++ L + G++K + ++
Sbjct: 227 ACTRDKTMMIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLS 286
Query: 302 DKTLISKIINISEHKIRKAYQIKN--KQIRDLTFKNISKDI---YSSLIDNENLTIDIND 356
DKTL K+ +++ +I + + K R NI KD+ + D E+L+I
Sbjct: 287 DKTL-EKVADLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKA 345
Query: 357 INCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALV 416
++ + K++R +++ G R+D R V+++RPI + LP HGS+LF+RGDTQ L
Sbjct: 346 VDTV----RKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLC 401
Query: 417 VATLGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALL 476
TLG + Q +D+L+G FMLHY+ PP+ T ++G+ G RRE+GHG LA++ALL
Sbjct: 402 TVTLGAPAEAQSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALL 461
Query: 477 PVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD- 535
VLP F Y+IR+ SE+ S+GS+SMASVCGG +AL+DAG+P+ HVAG+++GLI D
Sbjct: 462 AVLPPEEAFPYTIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDV 521
Query: 536 ----GE--KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYK 589
GE I++DILG ED GDMDFK+AGT +G+TA+Q+DIK GI DI+ +L
Sbjct: 522 DPSSGEIKDYRIVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLEN 581
Query: 590 AKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGT 649
A++ IL+ M+ + + + ++PRL T+K +R +IG G R + ETG
Sbjct: 582 AREARLQILDHMERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGA 641
Query: 650 QIDINDEGIITIASFNSVSGQEAKRRIEKLT-ESVQIGKVYTGIVLRLFDFGAIIRILSG 708
++ I D G +TI + N ++A+ +++ + + +G VY G V + ++GA + G
Sbjct: 642 RLSI-DNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGG 700
Query: 709 KDGLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 752
+ GLLH+S++S + V+ ++D L Q + + D RG IKLS
Sbjct: 701 QQGLLHMSELSHEPVSKVSDVLDIGQCITTMCIETDVRGNIKLS 744
>FB|FBgn0039846 [details] [associations]
symbol:CG11337 species:7227 "Drosophila melanogaster"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
FlyBase:FBgn0039846 EMBL:BT015961 ProteinModelPortal:Q5U1D1
SMR:Q5U1D1 STRING:Q5U1D1 PRIDE:Q5U1D1 InParanoid:Q5U1D1
ArrayExpress:Q5U1D1 Bgee:Q5U1D1 Uniprot:Q5U1D1
Length = 771
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 241/660 (36%), Positives = 371/660 (56%)
Query: 39 LNIHFK-LHIKDHHSRRGLIMMKGNFLFNKIIKSFKYGSYKISIEIGEIARQATSSVLVS 97
LN K L + RRG I N + +F G ++ G +AR A + +
Sbjct: 13 LNYRLKCLSLSCPGGRRG-IQSSSNGEAPSVEVNFSNGR-NMTFSSGRLARFANGTAVCQ 70
Query: 98 IEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETIISRL 157
+ DT ++ T V+ P F PL VDY K A+GRIP +F +RE PSE+E + +RL
Sbjct: 71 MGDTAVMVTAVAKAKPNPGQGFMPLVVDYRLKNAASGRIPMNFMRRELGPSEKEILSARL 130
Query: 158 IDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGVAKV 217
IDR +RPLF + Y E Q+V +L+++ PD+ +I S ALS+S++P+ GP+G +V
Sbjct: 131 IDRSLRPLFHKDYRTETQLVCNMLAMDAVHSPDVLAINAASMALSLSDIPWNGPIGAVRV 190
Query: 218 GYIDGKYILNPTTEQLKKSHLDLLVAGTEK-AIITVESESKQLPEDIILNAIIFGHEKMK 276
G DG+ ++NPT +L+ S LDL+V+ T++ ++ +E + + + +L AI G + +
Sbjct: 191 GLCDGEVLINPTRRELQTSQLDLVVSATKQNLVVMLEGKGNVVLQQDLLKAIKQGTREAQ 250
Query: 277 IAINAINELVQNVGQKKVNWDPIVK-DKTLISKIINISEHKIRKAYQ--IKNKQIRDLTF 333
I+ I L + G++K + + D L + ++ E ++R+ +Q +K RD
Sbjct: 251 FIIHEIERLQKAYGRQKREVEVAAEVDPELGKAVRSMCEMRLREIFQDSTHDKMSRD--- 307
Query: 334 KNISKDIYSSLIDNENLTIDINDINCIL--YDLESK-IIRKQILDKGLRIDNRGVNDIRP 390
N ++ S++ID + + + I ++ S+ I R+ I ++GLR D R + +R
Sbjct: 308 -NAVNEVRSNVIDKVWSSFPDTEPSLITEQFNQTSRTIFRELIFERGLRCDGRDYDQLRN 366
Query: 391 ISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALM-----GEFTDSFMLHYN 445
IS + + HGS+LF RG TQ +L + K+D+L G +FMLHY
Sbjct: 367 ISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAKNFMLHYE 426
Query: 446 MPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMA 505
PP+ATG++GRIG RRE+GHG LA+R+LLP LPN+ + +++RL SE+ ESNGSSSMA
Sbjct: 427 FPPYATGEVGRIGPVGRREMGHGALAERSLLPTLPND--YPFTVRLTSEVLESNGSSSMA 484
Query: 506 SVCGGCLALLDAGVPISEHVAGIAMGLI----KDGEKVV----ILSDILGDEDRCGDMDF 557
SVCGG LAL+DAGVP+S AG+A+GL+ D K + IL+DILG ED GDMD
Sbjct: 485 SVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIEDYMGDMDM 544
Query: 558 KVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAP 617
KVAGT G TA+Q D+KI GI ++ +L KA S IL+ M + + + + P
Sbjct: 545 KVAGTRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSNILDIMSEAIREPRKYPKESWP 604
Query: 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIE 677
T+ ++P + +IG G ++ + ETGT + DE + + + + EAK IE
Sbjct: 605 VSETLTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFNVFAPSQAAMDEAKELIE 664
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 169/439 (38%), Positives = 245/439 (55%)
Query: 335 NISKDIYSSLIDNENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIR 394
N+ ++SS D E I N I R+ I ++GLR D R + +R IS +
Sbjct: 316 NVIDKVWSSFPDTEPSLIT-EQFN----QTSRTIFRELIFERGLRCDGRDYDQLRNISCQ 370
Query: 395 TGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALM-----GEFTDSFMLHYNMPPF 449
+ HGS+LF RG TQ +L + K+D+L G +FMLHY PP+
Sbjct: 371 VDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPY 430
Query: 450 ATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCG 509
ATG++GRIG RRE+GHG LA+R+LLP LPN+ + +++RL SE+ ESNGSSSMASVCG
Sbjct: 431 ATGEVGRIGPVGRREMGHGALAERSLLPTLPND--YPFTVRLTSEVLESNGSSSMASVCG 488
Query: 510 GCLALLDAGVPISEHVAGIAMGLI----KDGEKVV----ILSDILGDEDRCGDMDFKVAG 561
G LAL+DAGVP+S AG+A+GL+ D K + IL+DILG ED GDMD KVAG
Sbjct: 489 GSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAG 548
Query: 562 TVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLIT 621
T G TA+Q D+KI GI ++ +L KA S IL+ M + + + + P T
Sbjct: 549 TRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSNILDIMSEAIREPRKYPKESWPVSET 608
Query: 622 IKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIE--KL 679
+ ++P + +IG G ++ + ETGT + DE + + + + EAK IE +
Sbjct: 609 LTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFNVFAPSQAAMDEAKELIEGYMV 668
Query: 680 TESV---QIGKVYTGIVLRLFDFGAIIRIL-SGKDGLLHISQISSKRV-NIITDFLKENQ 734
E V + G +YT + L D G ++ + S LLH SQ+ +++ + T L+ Q
Sbjct: 669 KERVPDLEFGGIYTAKITELRDTGVMVILYPSMPPALLHNSQLDQRKIAHPSTLNLEVGQ 728
Query: 735 KVRVKVLGIDD-RGRIKLS 752
+++VK G D G ++LS
Sbjct: 729 EIQVKYFGRDPVSGFMRLS 747
>MGI|MGI:1918951 [details] [associations]
symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000957 "mitochondrial RNA catabolic
process" evidence=ISO] [GO:0000958 "mitochondrial mRNA catabolic
process" evidence=ISO;IMP] [GO:0000962 "positive regulation of
mitochondrial RNA catabolic process" evidence=ISO] [GO:0000964
"mitochondrial RNA 5'-end processing" evidence=ISO] [GO:0000965
"mitochondrial RNA 3'-end processing" evidence=ISO] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0005758 "mitochondrial
intermembrane space" evidence=ISO;IDA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=ISO]
[GO:0016020 "membrane" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
[GO:0034599 "cellular response to oxidative stress" evidence=ISO]
[GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
respiration" evidence=IMP] [GO:0043631 "RNA polyadenylation"
evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
[GO:0045926 "negative regulation of growth" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
"positive regulation of mRNA catabolic process" evidence=ISO]
[GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
"mitochondrion morphogenesis" evidence=IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
[GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=ISO]
[GO:2000772 "regulation of cellular senescence" evidence=ISO]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1918951
Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
GO:GO:0034599 GO:GO:0045926 GO:GO:0035198 GO:GO:0070207
GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584
GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
eggNOG:COG1185 EMBL:BX000351 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:RDKTLMI CTD:87178 HOVERGEN:HBG053625
OrthoDB:EOG4T4CTT GO:GO:0097222 GO:GO:0000965 GO:GO:0000964
GO:GO:2000627 GO:GO:0000962 GO:GO:0035928 EMBL:AJ507387
EMBL:AF465249 EMBL:AK004563 EMBL:AK149419 EMBL:BC027228
EMBL:BC049283 EMBL:BC055826 IPI:IPI00321923 IPI:IPI00556889
RefSeq:NP_082145.1 RefSeq:XP_003689309.1 UniGene:Mm.211131 PDB:1WHU
PDBsum:1WHU ProteinModelPortal:Q8K1R3 SMR:Q8K1R3 STRING:Q8K1R3
PhosphoSite:Q8K1R3 PaxDb:Q8K1R3 PRIDE:Q8K1R3
Ensembl:ENSMUST00000020756 GeneID:71701 KEGG:mmu:71701
UCSC:uc007igp.1 GeneTree:ENSGT00390000014001 InParanoid:Q8K1R3
EvolutionaryTrace:Q8K1R3 NextBio:334263 Bgee:Q8K1R3
Genevestigator:Q8K1R3 GermOnline:ENSMUSG00000020464 Uniprot:Q8K1R3
Length = 783
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 243/637 (38%), Positives = 363/637 (56%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
G K+ I G++AR A ++ DT ++ T VS K S F PL VDY +KA AAG
Sbjct: 52 GHRKLEISSGKLARFADGCAVIQSGDTAVMVTAVS-KTKASPSQFMPLVVDYRQKAAAAG 110
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
RIP ++ +RE S+RE + SR+IDR IRPLFP GY + Q++ +L+V+ +PDI ++
Sbjct: 111 RIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDILAV 170
Query: 195 IGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVE 253
G S ALS+S++P+ GP+G ++G IDG+ ++NPT ++ S L+L+VAG K+ I+ +E
Sbjct: 171 NGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKSQIVMLE 230
Query: 254 SESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLI---SKII 310
+ ++ + + +AI G + + I I +LV+ +G K I I +KII
Sbjct: 231 ASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIVKYTKII 290
Query: 311 NISE-HKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCI-LYDLESK- 367
+ + + + Y+ +K RD I D L E +++ I +++ +K
Sbjct: 291 AMEKLYAVFTDYE-HDKVSRDEAVNKIRLDTEEHL--KEKFP-EVDQFEIIESFNIVAKE 346
Query: 368 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT---LGTS- 423
+ R IL++ R D R + +R IS + HGS+LF RG TQ L T L +S
Sbjct: 347 VFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSI 406
Query: 424 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 483
+ +Q I A+ G +FMLHY PP+AT + G++ RRE+GHG LA++AL PV+P +
Sbjct: 407 KSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPKD- 465
Query: 484 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLI-----KDGE- 537
F ++IR+ SE+ ESNGSSSMAS CGG LAL+DAGVPIS VAG+A+GL+ + GE
Sbjct: 466 -FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGEI 524
Query: 538 -KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSY 596
+L+DILG ED GDMDFK+AGT GITALQ DIK+ G+ II A+ +A
Sbjct: 525 EDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAIQQASVAKKE 584
Query: 597 ILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE 656
IL+ M + K + + P + T+K+ SK +G GG ++ L ETG I DE
Sbjct: 585 ILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDE 644
Query: 657 GIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIV 693
+I + + EA+ I ++ Q ++ G V
Sbjct: 645 ETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAV 681
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 186/538 (34%), Positives = 288/538 (53%)
Query: 240 LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPI 299
++ + I+ +E+ ++ + + +AI G + + I I +LV+ +G K I
Sbjct: 217 VVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKI 276
Query: 300 VKDKTLI---SKIINISE-HKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN 355
I +KII + + + + Y+ +K RD I D L E +++
Sbjct: 277 FTPSAEIVKYTKIIAMEKLYAVFTDYE-HDKVSRDEAVNKIRLDTEEHL--KEKFP-EVD 332
Query: 356 DINCI-LYDLESK-IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQ 413
I +++ +K + R IL++ R D R + +R IS + HGS+LF RG TQ
Sbjct: 333 QFEIIESFNIVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQ 392
Query: 414 ALVVAT---LGTS-RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGR 469
L T L +S + +Q I A+ G +FMLHY PP+AT + G++ RRE+GHG
Sbjct: 393 VLCTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGA 452
Query: 470 LAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIA 529
LA++AL PV+P + F ++IR+ SE+ ESNGSSSMAS CGG LAL+DAGVPIS VAG+A
Sbjct: 453 LAEKALCPVIPKD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVA 510
Query: 530 MGLI-----KDGE--KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDI 582
+GL+ + GE +L+DILG ED GDMDFK+AGT GITALQ DIK+ G+ I
Sbjct: 511 VGLVTKTNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKI 570
Query: 583 IQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRT 642
I A+ +A IL+ M + K + + P + T+K+ SK +G GG ++
Sbjct: 571 IMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGGYHLKK 630
Query: 643 LTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLT-----ESVQIGKVYTGIVLRLF 697
L ETG I DE +I + + EA+ I ++ + ++ G VYT + +
Sbjct: 631 LQAETGVTISQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIR 690
Query: 698 DFGAIIRILSGKDG-LLHISQISSKRVNIITDF-LKENQKVRVKVLGIDDR-GRIKLS 752
D G ++++ LLH SQ+ +++ T L+ Q+++VK G D GR++LS
Sbjct: 691 DTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLS 748
>UNIPROTKB|G3V6G7 [details] [associations]
symbol:Pnpt1 "Polyribonucleotide nucleotidyltransferase 1"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000958
"mitochondrial mRNA catabolic process" evidence=IEA] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end processing"
evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end processing"
evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
[GO:0034599 "cellular response to oxidative stress" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
degradosome" evidence=IEA] [GO:0045926 "negative regulation of
growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
catabolic process" evidence=IEA] [GO:0070207 "protein
homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=IEA]
[GO:2000772 "regulation of cellular senescence" evidence=IEA]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307987 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 CTD:87178 GeneTree:ENSGT00390000014001
EMBL:CH473996 RefSeq:NP_001135843.1 UniGene:Rn.23118
ProteinModelPortal:G3V6G7 Ensembl:ENSRNOT00000004919 GeneID:360992
KEGG:rno:360992 NextBio:674815 Uniprot:G3V6G7
Length = 784
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 244/636 (38%), Positives = 364/636 (57%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
G K+ I G++AR A +V DT ++ T VS P+ + F PL VDY +KA AAG
Sbjct: 52 GHRKLEISSGKLARFADGCAVVQSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAG 110
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
RIP ++ +RE S++E + SR+IDR IRPLFP GY + Q++ +L+V+ +PDI +I
Sbjct: 111 RIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINEPDILAI 170
Query: 195 IGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVE 253
G S ALS+S++P+ GP+G ++G IDG+ ++NPT +++ S L+L+VAG K+ I+ +E
Sbjct: 171 NGASAALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMLE 230
Query: 254 SESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIIN-I 312
+ ++ + + +AI G + + I +I +LV+ +G K I I K + I
Sbjct: 231 ASAENILQQDFCHAIKVGVKYTQQIIQSIQQLVKEIGVAKRTPQKIFTPSAEIVKYTHTI 290
Query: 313 SEHKIRKAYQI--KNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCI-LYDLESK-I 368
+ K+ + +K RD I D L E +++ + I +++ +K +
Sbjct: 291 AMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHL--KEKFP-EVDQLEIIESFNVVAKEV 347
Query: 369 IRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT---LGTS-R 424
R IL++ R D R + +R IS + HGS+LF RG TQ L T L +S +
Sbjct: 348 FRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIK 407
Query: 425 DEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
+Q I A+ G +FMLHY PP+AT + G++ RRE+GHG LA++AL PV+P +
Sbjct: 408 SDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPKD-- 465
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLI--KDGEKVVI- 541
F ++IR+ SE+ ESNGSSSMAS CGG LAL+DAGVPIS VAG+A+GL+ + EK I
Sbjct: 466 FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGEIE 525
Query: 542 ----LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
L+DILG ED GDMDFK+AGT GITALQ DIK+ G+ II A+ +A I
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKREI 585
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
L+ M + K + + P + T+K+ SK IG GG ++ L ETG I DE
Sbjct: 586 LQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVDEE 645
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIV 693
+I + + EA+ I ++ Q ++ G V
Sbjct: 646 TFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAV 681
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 187/537 (34%), Positives = 287/537 (53%)
Query: 240 LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPI 299
++ + I+ +E+ ++ + + +AI G + + I +I +LV+ +G K I
Sbjct: 217 VVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQSIQQLVKEIGVAKRTPQKI 276
Query: 300 VKDKTLISKIIN-ISEHKIRKAYQI--KNKQIRDLTFKNISKDIYSSLIDNENLTIDIND 356
I K + I+ K+ + +K RD I D L E +++
Sbjct: 277 FTPSAEIVKYTHTIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHL--KEKFP-EVDQ 333
Query: 357 INCI-LYDLESK-IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
+ I +++ +K + R IL++ R D R + +R IS + HGS+LF RG TQ
Sbjct: 334 LEIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQV 393
Query: 415 LVVAT---LGTS-RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRL 470
L T L +S + +Q I A+ G +FMLHY PP+AT + G++ RRE+GHG L
Sbjct: 394 LCTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGAL 453
Query: 471 AKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAM 530
A++AL PV+P + F ++IR+ SE+ ESNGSSSMAS CGG LAL+DAGVPIS VAG+A+
Sbjct: 454 AEKALCPVIPKD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAV 511
Query: 531 GLI--KDGEKVVI-----LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDII 583
GL+ + EK I L+DILG ED GDMDFK+AGT GITALQ DIK+ G+ II
Sbjct: 512 GLVTKSNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKII 571
Query: 584 QIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTL 643
A+ +A IL+ M + K + + P + T+K+ SK IG GG ++ L
Sbjct: 572 MEAIQQATVAKREILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKL 631
Query: 644 TEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLT-----ESVQIGKVYTGIVLRLFD 698
ETG I DE +I + + EA+ I ++ + ++ G VYT + + D
Sbjct: 632 QAETGVTISQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRD 691
Query: 699 FGAIIRILSGKDG-LLHISQISSKRVNIITDF-LKENQKVRVKVLGIDDR-GRIKLS 752
G ++++ LLH SQ+ +++ T L+ Q+++VK G D GR++LS
Sbjct: 692 TGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLS 748
>UNIPROTKB|Q8TCS8 [details] [associations]
symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0035458 "cellular
response to interferon-beta" evidence=IDA] [GO:0061014 "positive
regulation of mRNA catabolic process" evidence=IMP] [GO:0035927
"RNA import into mitochondrion" evidence=IDA] [GO:0000964
"mitochondrial RNA 5'-end processing" evidence=IMP] [GO:0000965
"mitochondrial RNA 3'-end processing" evidence=IMP] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=IMP] [GO:0070207
"protein homotrimerization" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IDA] [GO:0008266 "poly(U)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0000962 "positive regulation of mitochondrial RNA
catabolic process" evidence=IDA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IDA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0043631 "RNA polyadenylation"
evidence=IDA] [GO:0034599 "cellular response to oxidative stress"
evidence=IDA] [GO:0000957 "mitochondrial RNA catabolic process"
evidence=IDA] [GO:0006402 "mRNA catabolic process" evidence=IDA]
[GO:0045926 "negative regulation of growth" evidence=IDA]
[GO:0071850 "mitotic cell cycle arrest" evidence=IDA] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0005758
"mitochondrial intermembrane space" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0051260 "protein
homooligomerization" evidence=IDA] [GO:0000958 "mitochondrial mRNA
catabolic process" evidence=IDA] [GO:0045025 "mitochondrial
degradosome" evidence=IDA] [GO:0035928 "rRNA import into
mitochondrion" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071042 "nuclear polyadenylation-dependent mRNA
catabolic process" evidence=IDA] [GO:0043457 "regulation of
cellular respiration" evidence=ISS] [GO:0070584 "mitochondrion
morphogenesis" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:2000772 "regulation of cellular senescence" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005886
GO:GO:0008266 GO:GO:0005758 GO:GO:0034599 GO:GO:0045926
GO:GO:0035198 GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 eggNOG:COG1185
EMBL:AC015982 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:AJ458465
EMBL:AY027528 EMBL:BC000862 EMBL:BC005986 EMBL:BC053660
EMBL:AY290863 EMBL:CR749867 IPI:IPI00744711 PIR:T50626
RefSeq:NP_149100.2 UniGene:Hs.388733 PDB:3U1K PDBsum:3U1K
ProteinModelPortal:Q8TCS8 SMR:Q8TCS8 STRING:Q8TCS8
PhosphoSite:Q8TCS8 DMDM:115502437 REPRODUCTION-2DPAGE:IPI00291165
PaxDb:Q8TCS8 PeptideAtlas:Q8TCS8 PRIDE:Q8TCS8
Ensembl:ENST00000415374 Ensembl:ENST00000447944 GeneID:87178
KEGG:hsa:87178 UCSC:uc002rzf.2 CTD:87178 GeneCards:GC02M055861
H-InvDB:HIX0023979 HGNC:HGNC:23166 HPA:HPA034603 MIM:610316
neXtProt:NX_Q8TCS8 PharmGKB:PA134915354 HOVERGEN:HBG053625
InParanoid:Q8TCS8 OMA:YTMRVVS OrthoDB:EOG4T4CTT PhylomeDB:Q8TCS8
BRENDA:2.7.7.8 GenomeRNAi:87178 NextBio:76209 ArrayExpress:Q8TCS8
Bgee:Q8TCS8 CleanEx:HS_PNPT1 Genevestigator:Q8TCS8
GermOnline:ENSG00000138035 GO:GO:0097222 GO:GO:0000965
GO:GO:0000964 GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
Uniprot:Q8TCS8
Length = 783
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 238/638 (37%), Positives = 363/638 (56%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
G+ K+ I G++AR A S +V DT ++ T VS P+ + F PL VDY +KA AAG
Sbjct: 52 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAG 110
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
RIP ++ +RE S++E + SR+IDR IRPLFP GY + Q++ +L+V+ +PD+ +I
Sbjct: 111 RIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAI 170
Query: 195 IGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVE 253
G S ALS+S++P+ GP+G ++G IDG+Y++NPT +++ S L+L+VAG K+ I+ +E
Sbjct: 171 NGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLE 230
Query: 254 SESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINIS 313
+ ++ + + +AI G + + I I +LV+ G K + T +I+ +
Sbjct: 231 ASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLF---TPSPEIVKYT 287
Query: 314 EHKI--RKAYQI-----KNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
HK+ + Y + +K RD I D L + D +I +
Sbjct: 288 -HKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFP-EADPYEIIESFNVVAK 345
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS--- 423
++ R +L++ R D R + +R +S + HGS+LF RG TQ L T +
Sbjct: 346 EVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405
Query: 424 -RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+ +Q I A+ G +FMLHY PP+AT +IG++ RRE+GHG LA++AL PV+P +
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRD 465
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK--DGEKVV 540
F ++IR+ SE+ ESNGSSSMAS CGG LAL+D+GVPIS VAG+A+GL+ D EK
Sbjct: 466 --FPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523
Query: 541 I-----LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
I L+DILG ED GDMDFK+AGT GITALQ DIK+ GI I+ A+ +A
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
IL+ M + K + + P + T+++ SK +G GG ++ L ETG I D
Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD 643
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIV 693
E ++ + + EA+ I ++ + Q ++ G V
Sbjct: 644 EETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAV 681
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 176/535 (32%), Positives = 279/535 (52%)
Query: 240 LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPI 299
++ + I+ +E+ ++ + + +AI G + + I I +LV+ G K +
Sbjct: 217 VVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKL 276
Query: 300 VKDKTLISKIIN-ISEHKIRKAYQI--KNKQIRDLTFKNISKDIYSSLIDNENLTIDIND 356
I K + ++ ++ + +K RD I D L + D +
Sbjct: 277 FTPSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFP-EADPYE 335
Query: 357 INCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALV 416
I + ++ R +L++ R D R + +R +S + HGS+LF RG TQ L
Sbjct: 336 IIESFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLC 395
Query: 417 VATLGTS----RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAK 472
T + + +Q I A+ G +FMLHY PP+AT +IG++ RRE+GHG LA+
Sbjct: 396 TVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAE 455
Query: 473 RALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGL 532
+AL PV+P + F ++IR+ SE+ ESNGSSSMAS CGG LAL+D+GVPIS VAG+A+GL
Sbjct: 456 KALYPVIPRD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGL 513
Query: 533 IK--DGEKVVI-----LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQI 585
+ D EK I L+DILG ED GDMDFK+AGT GITALQ DIK+ GI I+
Sbjct: 514 VTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVME 573
Query: 586 ALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTE 645
A+ +A IL+ M + K + + P + T+++ SK +G GG ++ L
Sbjct: 574 AIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQA 633
Query: 646 ETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLT-----ESVQIGKVYTGIVLRLFDFG 700
ETG I DE ++ + + EA+ I ++ + ++ G VYT + + D G
Sbjct: 634 ETGVTISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTG 693
Query: 701 AIIRILSGKDG-LLHISQISSKRVNIITDF-LKENQKVRVKVLGIDDR-GRIKLS 752
++++ LLH +Q+ +++ T L+ Q+++VK G D GR++LS
Sbjct: 694 VMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLS 748
>UNIPROTKB|E1BIQ0 [details] [associations]
symbol:PNPT1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000772 "regulation of cellular senescence"
evidence=IEA] [GO:2000627 "positive regulation of miRNA catabolic
process" evidence=IEA] [GO:0097222 "mitochondrial mRNA
polyadenylation" evidence=IEA] [GO:0071850 "mitotic cell cycle
arrest" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0070584 "mitochondrion morphogenesis" evidence=IEA] [GO:0070207
"protein homotrimerization" evidence=IEA] [GO:0061014 "positive
regulation of mRNA catabolic process" evidence=IEA] [GO:0045926
"negative regulation of growth" evidence=IEA] [GO:0045025
"mitochondrial degradosome" evidence=IEA] [GO:0043457 "regulation
of cellular respiration" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0034599 "cellular response to oxidative stress"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005758 "mitochondrial intermembrane
space" evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0000965
"mitochondrial RNA 3'-end processing" evidence=IEA] [GO:0000964
"mitochondrial RNA 5'-end processing" evidence=IEA] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=IEA] [GO:0000958 "mitochondrial mRNA catabolic process"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005886 GO:GO:0008266
GO:GO:0005758 GO:GO:0034599 GO:GO:0006378 GO:GO:0045926
GO:GO:0035198 GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 CTD:87178 OMA:YTMRVVS GO:GO:0000965
GO:GO:0000964 GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
GeneTree:ENSGT00390000014001 EMBL:DAAA02030915 EMBL:DAAA02030914
IPI:IPI00700535 RefSeq:NP_001179126.1 UniGene:Bt.45909
ProteinModelPortal:E1BIQ0 Ensembl:ENSBTAT00000011729 GeneID:508877
KEGG:bta:508877 NextBio:20868715 Uniprot:E1BIQ0
Length = 783
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 239/636 (37%), Positives = 360/636 (56%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
GS K+ I G++AR A S +V DT ++ T VS P+ + F PL VDY +KA AAG
Sbjct: 52 GSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAG 110
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
RIP ++ +RE S++E + SR+IDR IRPLFP GY + QI+ +L+V+ +PD+ +I
Sbjct: 111 RIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDVLAI 170
Query: 195 IGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVE 253
G S ALS+S++P+ GP+G ++G IDG+ ++NPT +++ S L+L+V G K+ I+ +E
Sbjct: 171 NGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMANSTLNLVVTGAPKSQIVMLE 230
Query: 254 SESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG-QKKVNWDPIVKDKTLISKIINI 312
+ ++ + + +AI G + + I I +LV+ G K+ V ++ +
Sbjct: 231 ASAENILQQDFCHAIKVGVKHTQQIIQGIQQLVKENGVTKRTPQKLFVPSPEIVKHAHKL 290
Query: 313 SEHKIRKAY-QIKNKQI-RDLTFKNISKDIYSSLIDNENLTIDINDINCI-LYDLESK-I 368
+ K+ + ++ +I RD I D L E +++ I +++ +K +
Sbjct: 291 AMEKLYTVFTDYEHDKISRDEAINKIRLDTEEQL--KEKFP-EVDSCEIIESFNIATKDV 347
Query: 369 IRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQK 428
R IL++ R D R + +R I+ + HGSSLF RG TQ L T + K
Sbjct: 348 FRSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQVLCTVTFDSLESNFK 407
Query: 429 ID----ALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNK 484
D A+ G +FMLHY PP+AT +IG++ RRE+GHG LA+RAL PV+P +
Sbjct: 408 SDRIITAINGIKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAERALYPVIPKD-- 465
Query: 485 FNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLI-KDG------E 537
F ++IR+ SE+ ESNGSSSMAS CGG LAL+DAGVPIS VAG+A+GL+ K+ E
Sbjct: 466 FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNSPDKGEIE 525
Query: 538 KVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYI 597
+L+DILG ED GDMDFK+AGT GITALQ DIK+ GI I+ A+ +A I
Sbjct: 526 DYRLLTDILGIEDYHGDMDFKIAGTSKGITALQADIKLPGIPIKIVMEAIQQASVAKKEI 585
Query: 598 LEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
L+ M + K + + P + T+++ SK +G GG ++ L ETG I DE
Sbjct: 586 LQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEE 645
Query: 658 IITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIV 693
+I + + EA+ I + Q ++ G V
Sbjct: 646 TFSIFAPTPSAMHEARDFITDICRDDQEQQLEFGAV 681
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 179/537 (33%), Positives = 282/537 (52%)
Query: 240 LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG-QKKVNWDP 298
++ + I+ +E+ ++ + + +AI G + + I I +LV+ G K+
Sbjct: 217 VVTGAPKSQIVMLEASAENILQQDFCHAIKVGVKHTQQIIQGIQQLVKENGVTKRTPQKL 276
Query: 299 IVKDKTLISKIINISEHKIRKAY-QIKNKQI-RDLTFKNISKDIYSSLIDNENLTIDIND 356
V ++ ++ K+ + ++ +I RD I D L E +++
Sbjct: 277 FVPSPEIVKHAHKLAMEKLYTVFTDYEHDKISRDEAINKIRLDTEEQL--KEKFP-EVDS 333
Query: 357 INCI-LYDLESK-IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQA 414
I +++ +K + R IL++ R D R + +R I+ + HGSSLF RG TQ
Sbjct: 334 CEIIESFNIATKDVFRSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQV 393
Query: 415 LVVATLGTSRDEQKID----ALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRL 470
L T + K D A+ G +FMLHY PP+AT +IG++ RRE+GHG L
Sbjct: 394 LCTVTFDSLESNFKSDRIITAINGIKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGAL 453
Query: 471 AKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAM 530
A+RAL PV+P + F ++IR+ SE+ ESNGSSSMAS CGG LAL+DAGVPIS VAG+A+
Sbjct: 454 AERALYPVIPKD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAI 511
Query: 531 GLI-KDG------EKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDII 583
GL+ K+ E +L+DILG ED GDMDFK+AGT GITALQ DIK+ GI I+
Sbjct: 512 GLVTKNSPDKGEIEDYRLLTDILGIEDYHGDMDFKIAGTSKGITALQADIKLPGIPIKIV 571
Query: 584 QIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTL 643
A+ +A IL+ M + K + + P + T+++ SK +G GG ++ L
Sbjct: 572 MEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKL 631
Query: 644 TEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLT-----ESVQIGKVYTGIVLRLFD 698
ETG I DE +I + + EA+ I + + ++ G VYT + + D
Sbjct: 632 QAETGVTISQVDEETFSIFAPTPSAMHEARDFITDICRDDQEQQLEFGAVYTATITEIRD 691
Query: 699 FGAIIRILSGKDG-LLHISQISSKRVNIITDF-LKENQKVRVKVLGIDDR-GRIKLS 752
G ++++ LLH +Q+ +++ + L+ Q+++VK G D GR++LS
Sbjct: 692 TGVMVKLYPNMTAVLLHNTQLDQRKIKHPSALGLEVGQEIQVKYFGRDPADGRMRLS 748
>UNIPROTKB|Q5RCW2 [details] [associations]
symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
mitochondrial" species:9601 "Pongo abelii" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000957
"mitochondrial RNA catabolic process" evidence=ISS] [GO:0000958
"mitochondrial mRNA catabolic process" evidence=ISS] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=ISS] [GO:0000964 "mitochondrial RNA 5'-end processing"
evidence=ISS] [GO:0000965 "mitochondrial RNA 3'-end processing"
evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0008266 "poly(U) RNA binding" evidence=ISS] [GO:0034046
"poly(G) RNA binding" evidence=ISS] [GO:0034599 "cellular response
to oxidative stress" evidence=ISS] [GO:0035198 "miRNA binding"
evidence=ISS] [GO:0035927 "RNA import into mitochondrion"
evidence=ISS] [GO:0035928 "rRNA import into mitochondrion"
evidence=ISS] [GO:0043457 "regulation of cellular respiration"
evidence=ISS] [GO:0043631 "RNA polyadenylation" evidence=ISS]
[GO:0045025 "mitochondrial degradosome" evidence=ISS] [GO:0045926
"negative regulation of growth" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0061014 "positive regulation
of mRNA catabolic process" evidence=ISS] [GO:0070207 "protein
homotrimerization" evidence=ISS] [GO:0070584 "mitochondrion
morphogenesis" evidence=ISS] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISS]
[GO:0071850 "mitotic cell cycle arrest" evidence=ISS] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=ISS] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=ISS]
[GO:2000772 "regulation of cellular senescence" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0008266 GO:GO:0016020 GO:GO:0005758 GO:GO:0034599
GO:GO:0045926 GO:GO:0035198 GO:GO:0070207 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 CTD:87178 HOVERGEN:HBG053625 GO:GO:0097222
GO:GO:0000965 GO:GO:0000964 GO:GO:2000627 GO:GO:0000962
GO:GO:0035928 EMBL:CR858156 RefSeq:NP_001125193.1 UniGene:Pab.14131
ProteinModelPortal:Q5RCW2 SMR:Q5RCW2 PRIDE:Q5RCW2 GeneID:100172084
KEGG:pon:100172084 Uniprot:Q5RCW2
Length = 783
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 238/638 (37%), Positives = 359/638 (56%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
G+ K+ I G++AR A S +V DT ++ T VS P+ + F PL VDY +KA AAG
Sbjct: 52 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAG 110
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
RIP ++ +RE S++E + SR+IDR IRPLFP GY + Q++ +L+V+ +PD+ +I
Sbjct: 111 RIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAI 170
Query: 195 IGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVE 253
G S ALS+S++P+ GP+G ++G IDG+ ++NPT +++ S L+L+VAG K+ I+ +E
Sbjct: 171 NGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMLE 230
Query: 254 SESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINIS 313
+ ++ + + +AI G + + I I +LV+ G K + I K
Sbjct: 231 ASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVK----H 286
Query: 314 EHKI--RKAYQI-----KNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
HK+ + Y + +K RD I D L + D +I +
Sbjct: 287 THKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPQA-DPYEIIESFNVVAK 345
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS--- 423
++ R IL++ R D R + +R +S + HGS+LF RG TQ L T +
Sbjct: 346 EVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405
Query: 424 -RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+ +Q I A+ G +FMLHY PP+AT +IG++ RRE+GHG LA++AL PV+P +
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRD 465
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK--DGEKVV 540
F ++IR+ SE+ ESNGSSSMAS CGG LAL+D+GVPIS VAG+A+GL+ D EK
Sbjct: 466 --FPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523
Query: 541 I-----LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
I L+DILG ED GDMDFK+AGT GITALQ DIK+ GI I+ A+ +A
Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
IL+ M + K + + P + T+++ SK +G GG ++ L ETG I D
Sbjct: 584 EILQIMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD 643
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIV 693
E ++ + + EA+ I ++ + Q ++ G V
Sbjct: 644 EETFSVFAPTPSALHEARDFITEICKDDQEQQLEFGAV 681
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 175/535 (32%), Positives = 278/535 (51%)
Query: 240 LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG-QKKVNWDP 298
++ + I+ +E+ ++ + + +AI G + + I I +LV+ G K+
Sbjct: 217 VVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKL 276
Query: 299 IVKDKTLISKIINISEHKIRKAYQI--KNKQIRDLTFKNISKDIYSSLIDNENLTIDIND 356
++ ++ ++ + +K RD I D L + D +
Sbjct: 277 FTPSPEIVKHTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPQA-DPYE 335
Query: 357 INCILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALV 416
I + ++ R IL++ R D R + +R +S + HGS+LF RG TQ L
Sbjct: 336 IIESFNVVAKEVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLC 395
Query: 417 VATLGTS----RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAK 472
T + + +Q I A+ G +FMLHY PP+AT +IG++ RRE+GHG LA+
Sbjct: 396 TVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAE 455
Query: 473 RALLPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGL 532
+AL PV+P + F ++IR+ SE+ ESNGSSSMAS CGG LAL+D+GVPIS VAG+A+GL
Sbjct: 456 KALYPVIPRD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGL 513
Query: 533 IK--DGEKVVI-----LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQI 585
+ D EK I L+DILG ED GDMDFK+AGT GITALQ DIK+ GI I+
Sbjct: 514 VTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVME 573
Query: 586 ALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTE 645
A+ +A IL+ M + K + + P + T+++ SK +G GG ++ L
Sbjct: 574 AIQQASVAKKEILQIMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQA 633
Query: 646 ETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLT-----ESVQIGKVYTGIVLRLFDFG 700
ETG I DE ++ + + EA+ I ++ + ++ G VYT + + D G
Sbjct: 634 ETGVTISQVDEETFSVFAPTPSALHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTG 693
Query: 701 AIIRILSGKDG-LLHISQISSKRVNIITDF-LKENQKVRVKVLGIDDR-GRIKLS 752
++++ LLH +Q+ +++ T L+ Q+++VK G D GR++LS
Sbjct: 694 VMVKLYPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLS 748
>UNIPROTKB|F1NU18 [details] [associations]
symbol:PNPT1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0000958 "mitochondrial mRNA catabolic process" evidence=IEA]
[GO:0000962 "positive regulation of mitochondrial RNA catabolic
process" evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end
processing" evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end
processing" evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
[GO:0034599 "cellular response to oxidative stress" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
degradosome" evidence=IEA] [GO:0045926 "negative regulation of
growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
catabolic process" evidence=IEA] [GO:0070207 "protein
homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=IEA]
[GO:2000772 "regulation of cellular senescence" evidence=IEA]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS GO:GO:0000965 GO:GO:0000964
GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
GeneTree:ENSGT00390000014001 EMBL:AADN02046838 IPI:IPI00587631
Ensembl:ENSGALT00000012892 Uniprot:F1NU18
Length = 714
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 223/609 (36%), Positives = 347/609 (56%)
Query: 95 LVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERETII 154
L+ + DT ++ T VS P+++ F PL VDY +KA AAGRIP ++ +RE +++E +
Sbjct: 2 LIQLGDTAVMVTAVSKTKPSAS-QFMPLVVDYRQKAAAAGRIPTNYLRRELGTTDKEILT 60
Query: 155 SRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELPFLGPLGV 214
SR+IDR IRPLFP GY + QI+ +L+V+ DPD+ +I G S AL++S++P+ GP+G
Sbjct: 61 SRVIDRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLAINGASAALALSDIPWNGPVGA 120
Query: 215 AKVGYIDGKYILNPTTEQLKKSHLDLLVAGT-EKAIITVESESKQLPEDIILNAIIFGHE 273
+VG +DG+ ++NPT +Q+ S L+L+VA + ++ +E+ ++ + + +AI G +
Sbjct: 121 VRVGLVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLEATAENILQQDFCHAIKVGVK 180
Query: 274 KMKIAINAINELVQNVGQKKVNWDPI-VKDKTLISKIINISEHKIRKAY-QIKNKQI-RD 330
+ + I I +LV+ G K + V + ++ ++ +KI + + +I RD
Sbjct: 181 QTQHIIQGIQQLVKERGVVKRTVQKLFVAPEEIVECAKKLAFNKIYAVFTDFSHDKISRD 240
Query: 331 LTFKNISKDIYSSLIDN--ENLTIDINDINCILYDLESKII-RKQILDKGLRIDNRGVND 387
I + L + E +I + ++ SK+I R IL++ R D R +
Sbjct: 241 EAINKIRLETEEQLKEKFPEAEPYEIMES----FNAVSKVIFRNLILNEYRRCDGRDLTS 296
Query: 388 IRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKID----ALMGEFTDSFMLH 443
+R I + HGS+LF RG TQ L T + K D A+ G +FMLH
Sbjct: 297 LRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSGIKDKNFMLH 356
Query: 444 YNMPPFATGDIGRIGVPKRREIGH-GRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSS 502
Y PP+AT +IG++ RRE+GH G LA+RAL PV+P + F ++IR+ SE+ ESNGSS
Sbjct: 357 YEFPPYATNEIGKVTGVNRRELGHAGALAERALKPVIPQD--FPFTIRVTSEVLESNGSS 414
Query: 503 SMASVCGGCLALLDAGVPISEHVAGIAMGLI-------KDGEKVVILSDILGDEDRCGDM 555
SMAS CGG LAL+DAGVP+S VAG+A+GL+ +D E +L+DILG ED GDM
Sbjct: 415 SMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDPEGRDIEDYRLLTDILGIEDYYGDM 474
Query: 556 DFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKF 615
DFK+AGT G+TALQ+D+K+ GI II A+ +A IL+ M + K + +
Sbjct: 475 DFKMAGTSKGVTALQVDLKLPGIPIKIIMEAIQQATAAKREILQIMNETLAKPRPNRKES 534
Query: 616 APRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRR 675
P + TI + SK +G G ++ L +TG + DE ++ + + EA+
Sbjct: 535 GPVVETIHVPLSKRLRFLGPGAYNLKKLQAKTGVTLSQLDEETYSMFAPTPSAMHEAREF 594
Query: 676 IEKLTESVQ 684
I +L + Q
Sbjct: 595 IGELCKDDQ 603
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 155/412 (37%), Positives = 233/412 (56%)
Query: 362 YDLESKII-RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
++ SK+I R IL++ R D R + +R I + HGS+LF RG TQ L T
Sbjct: 270 FNAVSKVIFRNLILNEYRRCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTF 329
Query: 421 GTSRDEQKID----ALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGH-GRLAKRAL 475
+ K D A+ G +FMLHY PP+AT +IG++ RRE+GH G LA+RAL
Sbjct: 330 DSIESSVKSDLISTAVSGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHAGALAERAL 389
Query: 476 LPVLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLI-- 533
PV+P + F ++IR+ SE+ ESNGSSSMAS CGG LAL+DAGVP+S VAG+A+GL+
Sbjct: 390 KPVIPQD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTK 447
Query: 534 -----KDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALY 588
+D E +L+DILG ED GDMDFK+AGT G+TALQ+D+K+ GI II A+
Sbjct: 448 YDPEGRDIEDYRLLTDILGIEDYYGDMDFKMAGTSKGVTALQVDLKLPGIPIKIIMEAIQ 507
Query: 589 KAKKGLSYILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETG 648
+A IL+ M + K + + P + TI + SK +G G ++ L +TG
Sbjct: 508 QATAAKREILQIMNETLAKPRPNRKESGPVVETIHVPLSKRLRFLGPGAYNLKKLQAKTG 567
Query: 649 TQIDINDEGIITIASFNSVSGQEAKRRIEKLTE-----SVQIGKVYTGIVLRLFDFGAII 703
+ DE ++ + + EA+ I +L + +++ G +YT + + D G ++
Sbjct: 568 VTLSQLDEETYSMFAPTPSAMHEAREFIGELCKDDQEVNLEFGAIYTATITEIRDSGVMV 627
Query: 704 RILSGKDG-LLHISQISSKRVNIITDF-LKENQKVRVKVLGIDDR-GRIKLS 752
++ LLH SQ+ +++ + L+ Q+++VK G D GR++LS
Sbjct: 628 KLYPNMTPVLLHNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLS 679
>UNIPROTKB|E2QWK2 [details] [associations]
symbol:PNPT1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006402 "mRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS GeneTree:ENSGT00390000014001
EMBL:AAEX03007533 Ensembl:ENSCAFT00000004640 Uniprot:E2QWK2
Length = 789
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 242/701 (34%), Positives = 382/701 (54%)
Query: 84 GEIARQATSSV-LVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFK 142
G++ + ++ +S DT ++ T VS P+ + F PL VDY +KA AAGRIP ++ +
Sbjct: 63 GKLGNKTDNTAYFLSSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAGRIPTNYLR 121
Query: 143 REGKPSERETIISRLI-DRPIRPLFPEGYLNEIQIVVY-VLSVNPQIDPDIASIIGVSTA 200
RE S++E + SR+I DR IRPLFP GY + Q V +L N + P +I T
Sbjct: 122 REVGSSDKEVLTSRVIADRSIRPLFPAGYFYDTQYFVNRILFQNNE--PYALMLINRKTV 179
Query: 201 LSISE--LPFLGP-LGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVESES 256
L ++ L L LG ++G IDG+ ++NPT +++ S L+L+VAG K+ I+ +E+ +
Sbjct: 180 LLCNKDVLWALNTILGAVRIGMIDGECVVNPTRKEMSSSTLNLVVAGAPKSQIVMMEASA 239
Query: 257 KQLPEDIILNAIIFGHEKMKIAINAINELVQNVG-QKKVNWDPIVKDKTLISKIINISEH 315
+ + + +AI G + + I I +LV+ +G K+ ++ I ++
Sbjct: 240 ENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFTPSPEIVEHIHKLTME 299
Query: 316 KIRKAY-QIKNKQI-RDLTFKNISKDIYSSLIDN--ENLTIDI-NDINCILYDLESKIIR 370
++ + ++ +I RD I D L + E T +I N + ++ R
Sbjct: 300 RLYAVFTDYEHDKISRDEAINKIRLDTEEQLKEKFPEADTYEIIESFNVVA----KEVFR 355
Query: 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT---LGTS-RDE 426
IL++ R D R + +R I+ + HGS+LF RG TQ T L +S + +
Sbjct: 356 SIILNEYKRCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQTQVFCTVTFDSLESSIKSD 415
Query: 427 QKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFN 486
+ I A+ G +FMLHY PP+AT +IG++ RRE+GHG LA++AL PV+P + F
Sbjct: 416 RIITAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHGALAEKALYPVIPKD--FP 473
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLI-KDG------EKV 539
++IR+ SE+ ESNGSSSMAS CGG LAL+DAGVPIS VAG+A+GL+ K+ E
Sbjct: 474 FTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNNPDKGEIEDY 533
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+L+DILG ED GDMDFK+AGT GITALQ DIK+ GI I+ A+ +A IL+
Sbjct: 534 RLLTDILGIEDYNGDMDFKIAGTSKGITALQADIKLPGIPIKIVMEAIQQASVAKREILQ 593
Query: 600 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 659
M + K + + P + T+++ SK +G GG ++ L ETG + DE
Sbjct: 594 IMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTVSQVDEETF 653
Query: 660 TIASFNSVSGQEAKRRIEKLT-----ESVQIGKVYTGIVLRLFDFGAIIRILSGKDG-LL 713
++ + + EA+ I +L + ++ G VYT + + D G ++++ LL
Sbjct: 654 SVFAPTPSAMHEARDFITELCKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLL 713
Query: 714 HISQISSKRVNIITDF-LKENQKVRVKVLGIDDR-GRIKLS 752
H +Q+ +++ T L+ Q+++VK G D GR++LS
Sbjct: 714 HNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLS 754
>TIGR_CMR|CJE_1390 [details] [associations]
symbol:CJE_1390 "polyribonucleotide
nucleotidyltransferase" species:195099 "Campylobacter jejuni
RM1221" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_179377.1 ProteinModelPortal:Q5HTK8
STRING:Q5HTK8 GeneID:3231896 KEGG:cjr:CJE1390 PATRIC:20044580
BioCyc:CJEJ195099:GJC0-1417-MONOMER Uniprot:Q5HTK8
Length = 719
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 215/523 (41%), Positives = 306/523 (58%)
Query: 251 TVESESKQLPEDIILNAIIFGHEKMKIAINAINELV-QNVGQKKVNWDPIVKDKTLISKI 309
T +L ED IL A+ + + NA E ++ ++ ++ +++ I
Sbjct: 210 TTSQNMNELSEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEYPEILAFI 269
Query: 310 INISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKII 369
N + +I++A K R I+K+I + I E + +N L ++ K+I
Sbjct: 270 ENNFQKQIKEAINQMAKSERASELNKIAKEISNLEIAKEWSEESV--LNT-LAKVKRKLI 326
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
R QIL++G R D R +N++RPISI T ILP HGS LFTRG TQALVVATLG D Q I
Sbjct: 327 RGQILNEGKRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMI 386
Query: 430 DALMGE--FTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
D L + ++ FM++YN P F+ G+ I P RRE+GHG LAKRAL P + N + Y
Sbjct: 387 DLLTEKNPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDEN--YPY 444
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 547
IRLVSEI ESNGSSSMA+VCGG LAL AGVP + VAG+AMGLI + K +L+DI+G
Sbjct: 445 VIRLVSEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMG 504
Query: 548 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 607
ED GDMDFKVAG+ +G+TALQMDIK+ GI + ++ ALY+AK+G +IL M+ +
Sbjct: 505 LEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKE 564
Query: 608 C-KNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE-GIITIASFN 665
NE + P+L +DPSKI D+IG+ G TI+ + E+ G ID++ E G + IA
Sbjct: 565 IIVNE--EVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQ 622
Query: 666 SVSGQEAKRRIEKLTES---------------VQIGKVYTGIVLRLFDFGAIIRILSGKD 710
+ + AK I +T S ++G+ + GIV ++ FGA + + +G D
Sbjct: 623 NEQIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD 682
Query: 711 GLLHISQISSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 753
GLLH S+ SK +N L ENQ ++VK+ I + G+I + +
Sbjct: 683 GLLHSSK--SKHLN-----LSENQSLKVKISEIKN-GKISVDL 717
Score = 416 (151.5 bits), Expect = 5.4e-36, P = 5.4e-36
Identities = 98/253 (38%), Positives = 149/253 (58%)
Query: 83 IGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIPGSFFK 142
I ++A+QA +VL+ +V+LATV ++ +F PLTV YIEKAYAAG+IPG + K
Sbjct: 16 IDKVAKQAAGAVLMRQGKSVVLATVAR-EEKQVEEDFLPLTVQYIEKAYAAGKIPGGYVK 74
Query: 143 REGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALS 202
RE KPS+ ET+ +R+IDR +RPLFP+GY QIVV VLS +P++D + S+ S AL
Sbjct: 75 RETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALY 134
Query: 203 ISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPED 262
+S++P P+ ++G IDG +ILNP E+L+ S LDL VAG + ++ +E + LP D
Sbjct: 135 LSDIPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRA--LP-D 191
Query: 263 IILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQ 322
N I + + QN+ + ++ D I++ L K I + +A+
Sbjct: 192 QKENEIFIEAPYADVLTQTTS---QNMNE--LSEDEILEALNLAQKAILNGSNAYEEAFS 246
Query: 323 IKNKQIRDLTFKN 335
K+K+ + KN
Sbjct: 247 -KHKKNSQIELKN 258
>WB|WBGene00015266 [details] [associations]
symbol:BE0003N10.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003029 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50126
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
GeneTree:ENSGT00390000014001 EMBL:FO080241 RefSeq:NP_497324.3
UniGene:Cel.33878 ProteinModelPortal:Q965N3 SMR:Q965N3 PaxDb:Q965N3
EnsemblMetazoa:BE0003N10.1 GeneID:175269 KEGG:cel:CELE_BE0003N10.1
UCSC:BE0003N10.1 CTD:175269 WormBase:BE0003N10.1 InParanoid:Q965N3
OMA:PWNGPVX NextBio:887466 Uniprot:Q965N3
Length = 738
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 226/699 (32%), Positives = 355/699 (50%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
G I ++ G +AR A+S+V+ S D ++ATVV K + PL V+Y A A G
Sbjct: 34 GKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQGDGSGVPLQVEYRPSASAIG 93
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
RIP +F +RE S+ E +ISR IDR IRPL P G E QI+ L+++ D + I
Sbjct: 94 RIPTNFLRRELSQSDNEILISRAIDRSIRPLLP-GNSYETQIICKPLALDENADQIMLGI 152
Query: 195 IGVSTALSISELPFLGPLGVAKVGYID-GKYILNPTTEQLKKSHLDLLVAGT--EKAIIT 251
STAL IS + GPL +V G + +NPT E+L+++ L+L+VA EK ++
Sbjct: 153 NAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMRKHEKTVM- 211
Query: 252 VESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIIN 311
+E + ++ + + +A+ + A+ +L + + D ++ L
Sbjct: 212 IELDGRESSAEHLEHALDVAFRHVAKLHEAMEQLTAEPKDELASEDFSGLERLLEETARE 271
Query: 312 ISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESKIIRK 371
+ I A +K RD+ K I ++I + + T + + I L K++R
Sbjct: 272 RIYYVITDAGH--DKISRDMEIKAIFEEICA---EKAFQTCEKDAIYRTYSTLVKKVLRD 326
Query: 372 QILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSR---DEQK 428
L G+R D R ++ RPI+I + + HG S+F RG TQ + T +
Sbjct: 327 TTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDS 386
Query: 429 IDALMG-EFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 487
+ L+G + SFMLHY P FA + G RREIGHG LA+++L + P + F Y
Sbjct: 387 VAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNLFPAD--FPY 444
Query: 488 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKD-GE---KVVILS 543
+ RL ++ ESNGSSSMASVCGG LAL DAGVP+ AG+A+GLI D E K +L+
Sbjct: 445 ATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDEAEPETKYRVLT 504
Query: 544 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 603
DILG ED GDMDFKVAGT +G TA Q+D+K G+T + +L A+ G+ ++L+KM
Sbjct: 505 DILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQLTESLQAARAGIDHVLQKMSV 564
Query: 604 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 663
+ + + P + +++I+P K + G + + ETG +I DE I++ +
Sbjct: 565 MRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKLIEAETGVKISAEDEAHISLLA 624
Query: 664 FNSVSGQEAKRRIEKLTES-----VQIGKVYTGIVLRLFDFGAIIRILSGKDGLL----H 714
+ Q+A + + ES G + ++ + + G + + + H
Sbjct: 625 QDKEKLQKAMDMMNDVLESNSTLDFAFGSIVQAEIVEIIERGVYLTLPGSSRRIFMSNNH 684
Query: 715 ISQISSKRVNIITDFLKENQKVRVKVLGIDDR-GRIKLS 752
+S + +++ LK K+ V G D+ G I+LS
Sbjct: 685 LSLNPVRHPDVLG--LKIGDKMSVHWFGRDEHTGNIRLS 721
>UNIPROTKB|H7BZ02 [details] [associations]
symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006402 "mRNA catabolic process"
evidence=IEA] InterPro:IPR012162 InterPro:IPR015848 Pfam:PF03726
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000175 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AC015982
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 HGNC:HGNC:23166 ProteinModelPortal:H7BZ02
SMR:H7BZ02 Ensembl:ENST00000402246 Bgee:H7BZ02 Uniprot:H7BZ02
Length = 537
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 188/491 (38%), Positives = 287/491 (58%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
G+ K+ I G++AR A S +V DT ++ T VS P+ + F PL VDY +KA AAG
Sbjct: 52 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAG 110
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
RIP ++ +RE S++E + SR+IDR IRPLFP GY + Q++ +L+V+ +PD+ +I
Sbjct: 111 RIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAI 170
Query: 195 IGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVE 253
G S ALS+S++P+ GP+G ++G IDG+Y++NPT +++ S L+L+VAG K+ I+ +E
Sbjct: 171 NGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLE 230
Query: 254 SESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINIS 313
+ ++ + + +AI G + + I I +LV+ G K + T +I+ +
Sbjct: 231 ASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLF---TPSPEIVKYT 287
Query: 314 EHKI--RKAYQI-----KNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLES 366
HK+ + Y + +K RD I D L + D +I +
Sbjct: 288 -HKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFP-EADPYEIIESFNVVAK 345
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS--- 423
++ R +L++ R D R + +R +S + HGS+LF RG TQ L T +
Sbjct: 346 EVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405
Query: 424 -RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+ +Q I A+ G +FMLHY PP+AT +IG++ RRE+GHG LA++AL PV+P +
Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRD 465
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK--DGEKVV 540
F ++IR+ SE+ ESNGSSSMAS CGG LAL+D+GVPIS VAG+A+GL+ D EK
Sbjct: 466 --FPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523
Query: 541 I-----LSDIL 546
I L+DIL
Sbjct: 524 IEDYRLLTDIL 534
>RGD|1307987 [details] [associations]
symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000957
"mitochondrial RNA catabolic process" evidence=ISO] [GO:0000958
"mitochondrial mRNA catabolic process" evidence=ISO] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=ISO] [GO:0000964 "mitochondrial RNA 5'-end processing"
evidence=ISO] [GO:0000965 "mitochondrial RNA 3'-end processing"
evidence=ISO] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005758 "mitochondrial intermembrane space" evidence=ISO]
[GO:0005886 "plasma membrane" evidence=ISO] [GO:0006401 "RNA
catabolic process" evidence=ISO] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008266 "poly(U) RNA binding"
evidence=ISO] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
[GO:0034599 "cellular response to oxidative stress" evidence=ISO]
[GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
respiration" evidence=ISO] [GO:0043631 "RNA polyadenylation"
evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
[GO:0045926 "negative regulation of growth" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
"positive regulation of mRNA catabolic process" evidence=ISO]
[GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
"mitochondrion morphogenesis" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
[GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=ISO]
[GO:2000772 "regulation of cellular senescence" evidence=ISO]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 RGD:1307987 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
GO:GO:0070584 GO:GO:0000958 GO:GO:0071850 GO:GO:0000175
GO:GO:0043457 GO:GO:0071042 InterPro:IPR022967 SMART:SM00316
GO:GO:0045025 Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014
GO:GO:2000772 HOGENOM:HOG000218327 GO:GO:0004654 PANTHER:PTHR11252
HOVERGEN:HBG053625 GO:GO:0000965 GO:GO:0000964 GO:GO:2000627
GO:GO:0000962 GO:GO:0035928 UniGene:Rn.23118 EMBL:BC092603
IPI:IPI00777805 ProteinModelPortal:Q562B9 STRING:Q562B9
PRIDE:Q562B9 UCSC:RGD:1307987 InParanoid:Q562B9 ArrayExpress:Q562B9
Genevestigator:Q562B9 Uniprot:Q562B9
Length = 452
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 162/405 (40%), Positives = 233/405 (57%)
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT---LGTS 423
++ R IL++ R D R + +R IS + HGS+LF RG TQ L T L +S
Sbjct: 14 EVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESS 73
Query: 424 -RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNN 482
+ +Q I A+ G +FMLHY PP+AT + G++ RRE+GHG LA++AL PV+P +
Sbjct: 74 IKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALCPVIPKD 133
Query: 483 NKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLI--KDGEKVV 540
F ++IR+ SE+ ESNGSSSMAS CGG LAL+DAGVPIS VAG+A+GL+ + EK
Sbjct: 134 --FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGE 191
Query: 541 I-----LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLS 595
I L+DILG ED GDMDFK+AGT GITALQ DIK+ G+ II A+ +A
Sbjct: 192 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQATVAKR 251
Query: 596 YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND 655
IL+ M + K + + P + T+K+ SK IG GG ++ L ETG I D
Sbjct: 252 EILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGVTISQVD 311
Query: 656 EGIITIASFNSVSGQEAKRRIEKLT-----ESVQIGKVYTGIVLRLFDFGAIIRILSGKD 710
E +I + + EA+ I ++ + ++ G VYT + + D G ++++
Sbjct: 312 EETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 371
Query: 711 G-LLHISQISSKRVNIITDF-LKENQKVRVKVLGIDDR-GRIKLS 752
LLH SQ+ +++ T L+ Q+++VK G D GR++LS
Sbjct: 372 AVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLS 416
>UNIPROTKB|I3LEL9 [details] [associations]
symbol:LOC100737729 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006402 "mRNA catabolic process" evidence=IEA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR012162 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0003723 GO:GO:0006402 InterPro:IPR020568
SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0004654
PANTHER:PTHR11252 GeneTree:ENSGT00390000014001 EMBL:FP236371
Ensembl:ENSSSCT00000024635 OMA:RHIMVET Uniprot:I3LEL9
Length = 242
Score = 392 (143.0 bits), Expect = 1.4e-35, P = 1.4e-35
Identities = 80/186 (43%), Positives = 124/186 (66%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
GS K+ I G++AR A S +V DT ++ T VS P+ + F PL VDY +KA AAG
Sbjct: 52 GSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAG 110
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
RIP ++ +RE S++E + SR+IDR IRPLFP GY + QI+ +L+V+ +PD+ +I
Sbjct: 111 RIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNEPDVLAI 170
Query: 195 IGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA-IITVE 253
G S ALS+S++P+ GP+G ++G IDG+ ++NPT +++ S L+L+V G K+ I+ +E
Sbjct: 171 NGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVTGAPKSQILPLE 230
Query: 254 SESKQL 259
+ +L
Sbjct: 231 VSAARL 236
>UNIPROTKB|F1SQL0 [details] [associations]
symbol:PNPT1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006402 "mRNA catabolic process" evidence=IEA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
PROSITE:PS50126 SMART:SM00322 InterPro:IPR015847 GO:GO:0003723
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 SUPFAM:SSF55666 GO:GO:0004654
PANTHER:PTHR11252 GeneTree:ENSGT00390000014001 EMBL:FP236371
Ensembl:ENSSSCT00000009196 OMA:ITEIRNC Uniprot:F1SQL0
Length = 250
Score = 269 (99.8 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 71/214 (33%), Positives = 112/214 (52%)
Query: 547 GDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVP 606
G ED GDMDFK+AGT GITALQ DIK+ GI I+ A+ +A IL+ M +P
Sbjct: 1 GIEDYHGDMDFKIAGTAKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTIP 60
Query: 607 KCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
K + + P + T+++ SK +G GG ++ L ETG I DE +I +
Sbjct: 61 KPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGVTISQVDEETFSIFAPTP 120
Query: 667 VSGQEAKRRIEKLT-----ESVQIGKVYTGIVLRLFDFGAIIRILSGKDG-LLHISQISS 720
+ EAK I ++ + ++ G VYT + + D G ++++ LLH +Q+
Sbjct: 121 SAMHEAKDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQ 180
Query: 721 KRVNIITDF-LKENQKVRVKVLGIDDR-GRIKLS 752
+++ T L+ Q+++VK G D GR++LS
Sbjct: 181 RKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLS 214
>UNIPROTKB|H7BXF6 [details] [associations]
symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0006402 "mRNA
catabolic process" evidence=IEA] InterPro:IPR012162
InterPro:IPR001247 Pfam:PF01138 GO:GO:0003723 GO:GO:0006402
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC015982 GO:GO:0004654
PANTHER:PTHR11252 HGNC:HGNC:23166 ProteinModelPortal:H7BXF6
SMR:H7BXF6 PRIDE:H7BXF6 Ensembl:ENST00000260604 Bgee:H7BXF6
Uniprot:H7BXF6
Length = 179
Score = 254 (94.5 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 53/122 (43%), Positives = 79/122 (64%)
Query: 75 GSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAG 134
G+ K+ I G++AR A S +V DT ++ T VS P+ + F PL VDY +KA AAG
Sbjct: 52 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAG 110
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
RIP ++ +RE S++E + SR+IDR IRPLFP GY + Q++ +L+V+ +PD+ +I
Sbjct: 111 RIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAI 170
Query: 195 IG 196
G
Sbjct: 171 NG 172
>TIGR_CMR|CPS_2206 [details] [associations]
symbol:CPS_2206 "ribosomal protein S15" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0019843 Gene3D:1.10.287.10 InterPro:IPR009068
SUPFAM:SSF47060 HAMAP:MF_01343_B TIGRFAMs:TIGR00952
HOGENOM:HOG000040097 KO:K02956 eggNOG:COG0184 ProtClustDB:PRK05626
PANTHER:PTHR23321:SF10 OMA:LKMVSRR RefSeq:YP_268931.1
ProteinModelPortal:Q482T6 SMR:Q482T6 STRING:Q482T6 PRIDE:Q482T6
GeneID:3519898 KEGG:cps:CPS_2206 PATRIC:21467527
BioCyc:CPSY167879:GI48-2276-MONOMER Uniprot:Q482T6
Length = 89
Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
M++ KA+I+ + ++++ DTGSPEVQVALLT++IN L HFK HI DHHSRRGL+ M
Sbjct: 1 MSLNATEKAAIVAEYAQSEGDTGSPEVQVALLTTQINHLQGHFKAHIHDHHSRRGLLRM 59
>TIGR_CMR|SO_1207 [details] [associations]
symbol:SO_1207 "ribosomal protein S15" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 GO:GO:0019843 Gene3D:1.10.287.10 InterPro:IPR009068
SUPFAM:SSF47060 HAMAP:MF_01343_B TIGRFAMs:TIGR00952
HOGENOM:HOG000040097 KO:K02956 eggNOG:COG0184 ProtClustDB:PRK05626
PANTHER:PTHR23321:SF10 OMA:LKMVSRR RefSeq:NP_716831.1
ProteinModelPortal:Q8EHL3 SMR:Q8EHL3 GeneID:1169035
KEGG:son:SO_1207 PATRIC:23522072 Uniprot:Q8EHL3
Length = 89
Score = 174 (66.3 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 35/59 (59%), Positives = 42/59 (71%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
M++ KA I+ + R NDTGS EVQVALLT++IN L HFK HI DHHSRRGL+ M
Sbjct: 1 MSLSTEAKAKILAEFGRGANDTGSTEVQVALLTAQINHLQDHFKEHIHDHHSRRGLLRM 59
>UNIPROTKB|Q9KU77 [details] [associations]
symbol:rpsO "30S ribosomal protein S15" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000589 InterPro:IPR005290
Pfam:PF00312 PROSITE:PS00362 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:1.10.287.10 InterPro:IPR009068 SUPFAM:SSF47060
HAMAP:MF_01343_B TIGRFAMs:TIGR00952 KO:K02956 eggNOG:COG0184
ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10 OMA:LKMVSRR PIR:D82298
RefSeq:NP_230295.1 ProteinModelPortal:Q9KU77 SMR:Q9KU77
PRIDE:Q9KU77 DNASU:2615436 GeneID:2615436 KEGG:vch:VC0646
PATRIC:20080405 Uniprot:Q9KU77
Length = 89
Score = 173 (66.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
M++ KA+I+ + +R +NDTGSPEVQ+ALLT+ IN L HF+ H DHHSRRGL+ M
Sbjct: 1 MSLNAETKAAIVAEYARCENDTGSPEVQIALLTASINHLQGHFQAHKGDHHSRRGLLRM 59
>TIGR_CMR|VC_0646 [details] [associations]
symbol:VC_0646 "ribosomal protein S15" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:1.10.287.10 InterPro:IPR009068
SUPFAM:SSF47060 HAMAP:MF_01343_B TIGRFAMs:TIGR00952 KO:K02956
eggNOG:COG0184 ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10
OMA:LKMVSRR PIR:D82298 RefSeq:NP_230295.1 ProteinModelPortal:Q9KU77
SMR:Q9KU77 PRIDE:Q9KU77 DNASU:2615436 GeneID:2615436
KEGG:vch:VC0646 PATRIC:20080405 Uniprot:Q9KU77
Length = 89
Score = 173 (66.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
M++ KA+I+ + +R +NDTGSPEVQ+ALLT+ IN L HF+ H DHHSRRGL+ M
Sbjct: 1 MSLNAETKAAIVAEYARCENDTGSPEVQIALLTASINHLQGHFQAHKGDHHSRRGLLRM 59
>UNIPROTKB|P0ADZ4 [details] [associations]
symbol:rpsO species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0019843 "rRNA
binding" evidence=IEA;IDA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0006378 EMBL:U18997
GO:GO:0003735 GO:GO:0019843 PDB:3J00 PDBsum:3J00 PDB:3FIH PDB:3IZV
PDB:3IZW PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW GO:GO:0022627
EMBL:X13775 EMBL:J02638 Gene3D:1.10.287.10 InterPro:IPR009068
SUPFAM:SSF47060 EMBL:X00761 EMBL:M14425 PDB:3SFS PDB:3UOQ
PDBsum:3SFS PDBsum:3UOQ PDB:1EG0 PDBsum:1EG0 HAMAP:MF_01343_B
TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956 PDB:4GAS PDB:4GD1
PDBsum:4GAS PDBsum:4GD1 PDB:1P6G PDB:1P87 PDB:2AVY PDB:2AW7
PDB:2GY9 PDB:2GYB PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD
PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0
PDB:2WWL PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3 PDB:3E1A PDB:3E1C
PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J18
PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP
PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ
PDB:4GD2 PDBsum:1P6G PDBsum:1P87 PDBsum:2AVY PDBsum:2AW7
PDBsum:2GY9 PDBsum:2GYB PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2WWL
PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3 PDBsum:3E1A
PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q PDBsum:3I1S
PDBsum:3I1Z PDBsum:3I21 PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ
PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP
PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I
PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2 eggNOG:COG0184
ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10 OMA:LKMVSRR EMBL:X01073
PIR:B26118 RefSeq:NP_417634.1 RefSeq:YP_491352.1 PDB:2VAZ
PDBsum:2VAZ ProteinModelPortal:P0ADZ4 SMR:P0ADZ4 DIP:DIP-47909N
IntAct:P0ADZ4 MINT:MINT-1299353 PaxDb:P0ADZ4 PRIDE:P0ADZ4
EnsemblBacteria:EBESCT00000001882 EnsemblBacteria:EBESCT00000001883
EnsemblBacteria:EBESCT00000001885 EnsemblBacteria:EBESCT00000002007
EnsemblBacteria:EBESCT00000016345 GeneID:12933439 GeneID:947686
KEGG:ecj:Y75_p3087 KEGG:eco:b3165 PATRIC:32121748 EchoBASE:EB0907
EcoGene:EG10914 BioCyc:EcoCyc:EG10914-MONOMER
BioCyc:ECOL316407:JW3134-MONOMER EvolutionaryTrace:P0ADZ4
Genevestigator:P0ADZ4 Uniprot:P0ADZ4
Length = 89
Score = 161 (61.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 33/59 (55%), Positives = 40/59 (67%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
M++ A I+ + R NDTGS EVQVALLT++IN L HF H KDHHSRRGL+ M
Sbjct: 1 MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRM 59
>TAIR|locus:2076710 [details] [associations]
symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
Genevestigator:Q9SP08 Uniprot:Q9SP08
Length = 241
Score = 169 (64.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 56/229 (24%), Positives = 106/229 (46%)
Query: 376 KGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGE 435
+GLR+D R N++R I G++ + GS++F G+T+ ++ A G + K +
Sbjct: 7 EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTK-VIAAVYGPREIQNKSQQKKND 65
Query: 436 FTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEI 495
+ Y+M F+TGD R RR + ++ + + + I + ++
Sbjct: 66 HA-VVLCEYSMAQFSTGDRRRQKFD-RRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123
Query: 496 TESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDM 555
+++G + A + LAL DAG+P+ + + G + L D+ ED G
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTP----LLDLNYVEDSAGGA 179
Query: 556 DFKVA--GTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMK 602
D V ++ ++ LQMD K+ T++ + AL A +G I E+++
Sbjct: 180 DVTVGILPKLDKVSLLQMDAKLPMETFETV-FAL--ASEGCKAIAERIR 225
>TIGR_CMR|BA_3945 [details] [associations]
symbol:BA_3945 "ribosomal protein S15" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 Gene3D:1.10.287.10
InterPro:IPR009068 SUPFAM:SSF47060 HAMAP:MF_01343_B
TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956 eggNOG:COG0184
ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10 RefSeq:NP_846189.1
RefSeq:YP_020584.1 RefSeq:YP_029910.1 ProteinModelPortal:Q81WM7
SMR:Q81WM7 DNASU:1086841 EnsemblBacteria:EBBACT00000010824
EnsemblBacteria:EBBACT00000015276 EnsemblBacteria:EBBACT00000020741
GeneID:1086841 GeneID:2814412 GeneID:2852223 KEGG:ban:BA_3945
KEGG:bar:GBAA_3945 KEGG:bat:BAS3659 OMA:LKMVSRR
BioCyc:BANT260799:GJAJ-3717-MONOMER
BioCyc:BANT261594:GJ7F-3833-MONOMER Uniprot:Q81WM7
Length = 89
Score = 158 (60.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 32/61 (52%), Positives = 39/61 (63%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMK 60
M + K II + DTGSPEVQ+A+LT +IN LN H + H KDHHSRRGL+ M
Sbjct: 1 MALTQERKNEIIAQFRTHETDTGSPEVQIAVLTEQINTLNEHLRTHKKDHHSRRGLLKMV 60
Query: 61 G 61
G
Sbjct: 61 G 61
>TIGR_CMR|CHY_1760 [details] [associations]
symbol:CHY_1760 "ribosomal protein S15" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312
PROSITE:PS00362 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:1.10.287.10 InterPro:IPR009068 SUPFAM:SSF47060
HAMAP:MF_01343_B TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956
eggNOG:COG0184 ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10
RefSeq:YP_360580.1 ProteinModelPortal:Q3ABA4 SMR:Q3ABA4
STRING:Q3ABA4 GeneID:3726879 KEGG:chy:CHY_1760 PATRIC:21276633
OMA:INRLNEH BioCyc:CHYD246194:GJCN-1759-MONOMER Uniprot:Q3ABA4
Length = 89
Score = 157 (60.3 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 37/84 (44%), Positives = 47/84 (55%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMK 60
M + K II + DTGSPEVQ+A+LT RIN L H K+H KD HSRRGL+ M
Sbjct: 1 MALTQEQKMEIISKYQLHEKDTGSPEVQIAILTERINQLTEHLKVHKKDFHSRRGLLKMV 60
Query: 61 GN--FLFNKIIKSFKYGSYKISIE 82
G L N +K + Y+ +E
Sbjct: 61 GQRRSLLN-YLKRKDFERYRAIVE 83
>TIGR_CMR|GSU_1592 [details] [associations]
symbol:GSU_1592 "ribosomal protein S15" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000589
InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
GO:GO:0019843 Gene3D:1.10.287.10 InterPro:IPR009068 SUPFAM:SSF47060
HAMAP:MF_01343_B TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956
eggNOG:COG0184 ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10
OMA:INRLNEH RefSeq:NP_952643.1 ProteinModelPortal:Q74CT0 SMR:Q74CT0
PRIDE:Q74CT0 GeneID:2685309 KEGG:gsu:GSU1592 PATRIC:22026029
BioCyc:GSUL243231:GH27-1633-MONOMER Uniprot:Q74CT0
Length = 88
Score = 155 (59.6 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 8 KASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMKG 61
K II + +DTGSPEVQ+ALLT RI L HFK+H KDHHSRRGL+ + G
Sbjct: 7 KKEIITTHKLHDSDTGSPEVQIALLTERIIYLTEHFKVHKKDHHSRRGLLKIVG 60
>UNIPROTKB|P66429 [details] [associations]
symbol:rpsO "30S ribosomal protein S15" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312
PROSITE:PS00362 GO:GO:0005886 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842580
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:1.10.287.10 InterPro:IPR009068 SUPFAM:SSF47060
HAMAP:MF_01343_B TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956
eggNOG:COG0184 ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10
OMA:INRLNEH PIR:H70883 RefSeq:NP_217301.1 RefSeq:NP_337360.1
RefSeq:YP_006516231.1 ProteinModelPortal:P66429 SMR:P66429
PRIDE:P66429 EnsemblBacteria:EBMYCT00000000117
EnsemblBacteria:EBMYCT00000072434 GeneID:13317570 GeneID:888455
GeneID:925427 KEGG:mtc:MT2855 KEGG:mtu:Rv2785c KEGG:mtv:RVBD_2785c
PATRIC:18128032 TubercuList:Rv2785c Uniprot:P66429
Length = 89
Score = 150 (57.9 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMK 60
M + K I+ + DTGSPE Q+ALLT RI DL H K+H DHHSRRGL+++
Sbjct: 1 MALTAEQKKEILRSYGLHETDTGSPEAQIALLTKRIADLTEHLKVHKHDHHSRRGLLLLV 60
Query: 61 G 61
G
Sbjct: 61 G 61
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 168 (64.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 42/104 (40%), Positives = 63/104 (60%)
Query: 651 IDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKD 710
++++ E I S +V E + ++ S++ G V G V RL DFGA + + G D
Sbjct: 154 VELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNV-GGVD 212
Query: 711 GLLHISQISSKRVNIITDFLKENQKVRVKVLGID-DRGRIKLSM 753
GL+HISQIS +RV ++ L++ QKV+VKVL +D D RI LS+
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSI 256
Score = 136 (52.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 677 EKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKV 736
E + V+ G + G+V RL FGA + IL G +GL+H+SQI+++ V + L+ Q+V
Sbjct: 265 ENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEV 324
Query: 737 RVKVLGID-DRGRIKLSM 753
+VKVL + RI LS+
Sbjct: 325 KVKVLEVHVAEKRISLSI 342
Score = 49 (22.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 301 KDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE 348
K KTL KI+ + K R + +K + +L + K+ SSL + +
Sbjct: 145 KGKTLAVKIVELDREKNRVI--LSHKAVVELELDSKKKEAISSLKEGD 190
Score = 44 (20.5 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 255 ESKQLPE-DIILNAIIFGHEKMKIAINA---------INELVQNVGQKKVNWDPIVKDKT 304
+SK+L D++ ++ EK ++ +N I+EL NV +K + D + D+T
Sbjct: 11 DSKELQVGDVVTGSVTKVEEK-QVLVNVGYKTDGVIPISELA-NVHIEKAS-DVVELDQT 67
Query: 305 LISKIINISEHKI 317
L K+I + E+ +
Sbjct: 68 LELKVIKLEENDL 80
>TIGR_CMR|SPO_3840 [details] [associations]
symbol:SPO_3840 "ribosomal protein S15" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000589
InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:1.10.287.10 InterPro:IPR009068 SUPFAM:SSF47060
HAMAP:MF_01343_B TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956
eggNOG:COG0184 ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10
OMA:INRLNEH RefSeq:YP_169028.1 ProteinModelPortal:Q5LLT1 SMR:Q5LLT1
PRIDE:Q5LLT1 GeneID:3196119 KEGG:sil:SPO3840 PATRIC:23381183
Uniprot:Q5LLT1
Length = 89
Score = 147 (56.8 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
M+I KA ++ + DTGSPEVQVA+L+SRI L HFK H KD+H RRGL+ +
Sbjct: 1 MSITTEEKARVMKEYGTKDGDTGSPEVQVAILSSRIATLTEHFKTHKKDNHGRRGLLKL 59
>TIGR_CMR|CBU_0851 [details] [associations]
symbol:CBU_0851 "ribosomal protein S15" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000589 InterPro:IPR005290
Pfam:PF00312 PROSITE:PS00362 GO:GO:0006412 GO:GO:0005840
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
Gene3D:1.10.287.10 InterPro:IPR009068 SUPFAM:SSF47060
HAMAP:MF_01343_B TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956
eggNOG:COG0184 ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10
OMA:LKMVSRR RefSeq:NP_819871.1 ProteinModelPortal:Q83D88 SMR:Q83D88
PRIDE:Q83D88 GeneID:1208744 KEGG:cbu:CBU_0851 PATRIC:17930399
BioCyc:CBUR227377:GJ7S-846-MONOMER Uniprot:Q83D88
Length = 89
Score = 146 (56.5 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 30/59 (50%), Positives = 40/59 (67%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
M++ + A I+ + K+DTGSPEVQVA+LT++I L H K H DHHSRRGL+ M
Sbjct: 1 MSLASAETAKIVKEYQLGKDDTGSPEVQVAILTAKIIKLTDHMKAHKHDHHSRRGLLRM 59
>UNIPROTKB|Q7YRA3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
Uniprot:Q7YRA3
Length = 245
Score = 152 (58.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 53/229 (23%), Positives = 102/229 (44%)
Query: 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMG 434
D+G R+D R ++R I R G+ + GS+ +G+T+AL V + AL
Sbjct: 9 DQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPD 68
Query: 435 EFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSE 494
+ Y+ F+TG+ R R+ G ++ + I + +
Sbjct: 69 RALVN--CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQ 126
Query: 495 ITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGD 554
+ +++G + A V LA+LDAG+P+ + V + G + DG + LS + E+ G
Sbjct: 127 VLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV-DGTALADLSHV---EEAAGG 182
Query: 555 MDFKVAGT-VNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
+A +G I L+MD ++ + + A +A + + +L+++
Sbjct: 183 PQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRV 231
>UNIPROTKB|Q724J5 [details] [associations]
symbol:LMOf2365_0229 "RNA-binding protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
Length = 142
Score = 135 (52.6 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVL 741
S+++G G V + +FGA + + GK GL+HIS+++ V I D L +V VKV+
Sbjct: 2 SIEVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVM 61
Query: 742 GIDDRGRIKLSM 753
I D G+I LS+
Sbjct: 62 NIGDDGKIGLSI 73
>MGI|MGI:1923576 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
Length = 245
Score = 150 (57.9 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 54/227 (23%), Positives = 101/227 (44%)
Query: 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMG 434
D+G RID R ++R I R G+ + GS+ +G+T+AL V + AL
Sbjct: 9 DQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPD 68
Query: 435 EFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSE 494
+ Y+ F+TG+ R R+ G ++ + I + +
Sbjct: 69 RALVN--CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQ 126
Query: 495 ITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGD 554
+ +++G + A V LA++DAG+P+ + V + G + DG + LS + E+ G
Sbjct: 127 VLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV-DGTALADLSHV---EEAAGG 182
Query: 555 MDFKVAGT-VNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+A +G I L+MD ++ + + A +A +G+ +L+
Sbjct: 183 PQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLD 229
>UNIPROTKB|Q9NPD3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
"DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
"defense response to virus" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
Length = 245
Score = 149 (57.5 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 53/229 (23%), Positives = 102/229 (44%)
Query: 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMG 434
D+G R+D R ++R I R G+ + GS+ +G+T+AL V + AL
Sbjct: 9 DQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPD 68
Query: 435 EFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSE 494
+ Y+ F+TG+ R R+ G ++ + I + +
Sbjct: 69 RALVN--CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQ 126
Query: 495 ITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGD 554
+ +++G + A V LA+LDAG+P+ + V + G + DG + LS + E+ G
Sbjct: 127 VLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV-DGTALADLSHV---EEAAGG 182
Query: 555 MDFKVAGT-VNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
+A +G I L+MD ++ + + A +A + + +L+++
Sbjct: 183 PQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRV 231
>UNIPROTKB|E2RIM3 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
"DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
NextBio:20856762 Uniprot:E2RIM3
Length = 245
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 57/233 (24%), Positives = 109/233 (46%)
Query: 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMG 434
D+G R+D R ++R I R G+ + GS+ +G+T+AL V + AL
Sbjct: 9 DQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPD 68
Query: 435 EFTDSFMLHYNMPPFATGDIGRI--GVPKRREIG-HGRLA-KRALLPVLPNNNKFNYSIR 490
+ Y+ F+TG+ R G K E+G H R + A+L L ++ + +
Sbjct: 69 RALVN--CQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYV- 125
Query: 491 LVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDED 550
++ +++G + A V LA+LDAG+P+ + V + G + + L+D+ E+
Sbjct: 126 ---QVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDN----TALADLSHVEE 178
Query: 551 RCGDMDFKVAGT-VNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
G +A +G I L+MD ++ + + A +A + + +L+++
Sbjct: 179 AAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRV 231
>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
symbol:exosc4 "exosome component 4" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
Length = 245
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 58/237 (24%), Positives = 108/237 (45%)
Query: 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVA----TLGTSRDEQKID 430
D+G R+D R ++R + R + + GS+ +G+T+AL V + SR + D
Sbjct: 9 DQGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHD 68
Query: 431 ALMGEFTDSFMLHYNMPPFATGDIGRI--GVPKRREIG-HGRLA-KRALLPVLPNNNKFN 486
+ Y+M F+T + R G K E+ H + + A+L L ++ +
Sbjct: 69 RAI------INCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQID 122
Query: 487 YSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDIL 546
++++ +++G + A V LAL+DAG+P+ ++V + G ++D L+D+
Sbjct: 123 IYVKIL----QADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTP----LADLC 174
Query: 547 GDEDRCGDMDFKVA--GTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
E+ G +A I LQMD ++ D + A A K S +L+ +
Sbjct: 175 HAEESGGGTALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSV 231
>UNIPROTKB|F1RSL0 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
KEGG:ssc:100511875 Uniprot:F1RSL0
Length = 245
Score = 147 (56.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 54/229 (23%), Positives = 102/229 (44%)
Query: 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMG 434
D+G R+D R ++R I R G+ + GS+ +G+T+AL V + AL
Sbjct: 9 DQGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPD 68
Query: 435 EFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSE 494
+ Y+ F+TG+ R R+ G ++A + I + +
Sbjct: 69 RALVN--CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQ 126
Query: 495 ITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGD 554
+ +++G A V LA+LDAG+P+ + V + G + DG + LS + E+ G
Sbjct: 127 VLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFV-DGTALADLSHV---EEAAGG 182
Query: 555 MDFKVAGT-VNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
+A +G I L+MD ++ + + A +A + + +L+++
Sbjct: 183 PQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTVLDRV 231
>TIGR_CMR|CJE_0964 [details] [associations]
symbol:CJE_0964 "ribosomal protein S15" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312
PROSITE:PS00362 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 GO:GO:0019843
Gene3D:1.10.287.10 InterPro:IPR009068 SUPFAM:SSF47060
HAMAP:MF_01343_B TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956
eggNOG:COG0184 ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10
OMA:LKMVSRR RefSeq:YP_178962.1 ProteinModelPortal:Q5HUS3 SMR:Q5HUS3
STRING:Q5HUS3 GeneID:3231475 KEGG:cjr:CJE0964 PATRIC:20043707
BioCyc:CJEJ195099:GJC0-982-MONOMER Uniprot:Q5HUS3
Length = 90
Score = 131 (51.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMK 60
M + + KA I+ ++ DTGS EVQVALLT+RI +L H K++ KD SR GL+ +
Sbjct: 1 MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLKIYKKDFSSRLGLLKLV 60
Query: 61 GNFL-FNKIIKSFKYGSY-KISIEI 83
G +K Y SY K+ E+
Sbjct: 61 GQRKRLLSYLKRKDYNSYSKLITEL 85
>RGD|1310986 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
[GO:0051607 "defense response to virus" evidence=IEA;ISO]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
Uniprot:D4A4Y0
Length = 245
Score = 146 (56.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 53/229 (23%), Positives = 102/229 (44%)
Query: 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMG 434
D+G RID R ++R I R G+ + GS+ +G+T+AL V + AL
Sbjct: 9 DQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPD 68
Query: 435 EFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSE 494
+ Y+ F+TG+ R R+ G ++ + I + +
Sbjct: 69 RALVN--CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQ 126
Query: 495 ITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGD 554
+ +++G + A V LA++DAG+P+ + V + G + DG + LS + E+ G
Sbjct: 127 VLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV-DGTALADLSHV---EEAAGG 182
Query: 555 MDFKVAGT-VNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
+A +G I L+MD ++ + + A +A + + +L+++
Sbjct: 183 PQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRV 231
>UNIPROTKB|Q84T68 [details] [associations]
symbol:RRP46 "Exosome complex exonuclease RRP46 homolog"
species:39947 "Oryza sativa Japonica Group" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0004536
"deoxyribonuclease activity" evidence=IDA] [GO:0004540
"ribonuclease activity" evidence=IDA] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730 GO:GO:0003727
EMBL:DP000009 EMBL:AP008209 GO:GO:0003690 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0004536 GO:GO:0006364 eggNOG:COG0689 SUPFAM:SSF55666
KO:K12590 EMBL:AC120506 EMBL:AK069107 RefSeq:NP_001051936.1
UniGene:Os.47503 PDB:3HKM PDBsum:3HKM ProteinModelPortal:Q84T68
STRING:Q84T68 EnsemblPlants:LOC_Os03g63720.1 GeneID:4334824
KEGG:dosa:Os03t0854200-01 KEGG:osa:4334824 Gramene:Q84T68
OMA:EKACIEV ProtClustDB:CLSN2684812 EvolutionaryTrace:Q84T68
Uniprot:Q84T68
Length = 238
Score = 145 (56.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 52/174 (29%), Positives = 78/174 (44%)
Query: 379 RIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438
R D R N +RP S L R HGS+ + +GDT L A G +K GE +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLA-AVYGPKPGTRK-----GENPE 58
Query: 439 SFMLHYNMPPFATGDIGRIGVPKRREIGHGR-LAKRALLPVLPNNNKFNYSIRLVSEITE 497
+ P TG IG+ K E+ R L LL V PN + ++ ++
Sbjct: 59 KASIEVVWKPM-TGQIGK--QEKEYEMTLKRTLQSICLLTVHPNT-----TTSVILQVVG 110
Query: 498 SNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDR 551
++GS ++ C AL+ AG+P+ I G+++DGE VIL +E +
Sbjct: 111 NDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE--VILDTNKAEEQQ 162
>UNIPROTKB|Q81VX9 [details] [associations]
symbol:BAS0060 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVL 741
S+++G G V + +FGA + + G GL+HIS+++ V I D LK +V VKV+
Sbjct: 2 SIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVI 61
Query: 742 GIDDRGRIKLSM 753
++ G+I LS+
Sbjct: 62 NVEKDGKIGLSI 73
>TIGR_CMR|BA_0060 [details] [associations]
symbol:BA_0060 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 682 SVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVL 741
S+++G G V + +FGA + + G GL+HIS+++ V I D LK +V VKV+
Sbjct: 2 SIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVI 61
Query: 742 GIDDRGRIKLSM 753
++ G+I LS+
Sbjct: 62 NVEKDGKIGLSI 73
>TIGR_CMR|BA_5132 [details] [associations]
symbol:BA_5132 "general stress protein 13" species:198094
"Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
DNASU:1084499 EnsemblBacteria:EBBACT00000012496
EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
BioCyc:BANT260799:GJAJ-4848-MONOMER
BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
Length = 114
Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 679 LTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRV 738
++E G V TG V + D+GA + + + GL+HIS+I++ V I DFLK V V
Sbjct: 1 MSEQYTTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEV 60
Query: 739 KVLGIDDRGRIKLSM 753
KVL ID+ R K+S+
Sbjct: 61 KVLSIDEEHR-KMSL 74
>TAIR|locus:2065165 [details] [associations]
symbol:DUF5 "AT2G47220" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] GO:GO:0005634 GO:GO:0009570 EMBL:CP002685
InterPro:IPR020568 SUPFAM:SSF54211 InterPro:IPR007930 Pfam:PF05266
IPI:IPI00546959 RefSeq:NP_182244.2 UniGene:At.48604
ProteinModelPortal:F4IL21 SMR:F4IL21 PRIDE:F4IL21
EnsemblPlants:AT2G47220.1 GeneID:819335 KEGG:ath:AT2G47220
Uniprot:F4IL21
Length = 469
Score = 150 (57.9 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 66 NKIIKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVD 125
N + +G+ +I +E G + RQA+S+V V+ +T++ +V P+ +F PL V
Sbjct: 18 NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVH 77
Query: 126 YIEKAYAAGRIPGSFFKREGKPSERE 151
Y E+ A GR G FFKREG+ + E
Sbjct: 78 YQERFSAVGRTSGGFFKREGRTKDHE 103
>TIGR_CMR|ECH_0727 [details] [associations]
symbol:ECH_0727 "ribosomal protein S15" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:1.10.287.10 InterPro:IPR009068
SUPFAM:SSF47060 HAMAP:MF_01343_B TIGRFAMs:TIGR00952
HOGENOM:HOG000040097 KO:K02956 eggNOG:COG0184 ProtClustDB:PRK05626
PANTHER:PTHR23321:SF10 OMA:LKMVSRR RefSeq:YP_507530.1
ProteinModelPortal:Q2GGA3 STRING:Q2GGA3 GeneID:3927051
KEGG:ech:ECH_0727 PATRIC:20576898
BioCyc:ECHA205920:GJNR-730-MONOMER Uniprot:Q2GGA3
Length = 93
Score = 125 (49.1 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
M+I K+ +I + K+DTGS VQ A+L+ RI +L H K+H KD H RRGL+++
Sbjct: 1 MSITRERKSELISEYCLKKDDTGSSFVQCAILSERIRNLTEHLKVHKKDFHCRRGLMVL 59
>TIGR_CMR|CHY_0314 [details] [associations]
symbol:CHY_0314 "ribonuclease PH" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004549
"tRNA-specific ribonuclease activity" evidence=ISS] [GO:0008033
"tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:YP_359184.1 ProteinModelPortal:Q3AFA0
SMR:Q3AFA0 STRING:Q3AFA0 GeneID:3726312 KEGG:chy:CHY_0314
PATRIC:21273799 BioCyc:CHYD246194:GJCN-315-MONOMER Uniprot:Q3AFA0
Length = 254
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 59/241 (24%), Positives = 109/241 (45%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALM-GEF 436
+RID R + +R + I T + GS L GDT+ + AT+ E K+ GE
Sbjct: 1 MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATV-----EDKVPPFAKGEG 55
Query: 437 TDSFMLHYNMPPFATGDIGRIGVPKRREIGHG----RLAKRALLPVLPNNNKFNYSIRLV 492
Y M P +T K R+ G RL RAL V+ ++ +
Sbjct: 56 KGWITAEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWID 115
Query: 493 SEITESNGSSSMASVCGGCLAL-------LDAGV----PISEHVAGIAMGLIKDGEKVVI 541
++ +++G + A++ G +AL ++ G+ P+ + VA +++G++ DGE+++
Sbjct: 116 CDVIQADGGTRTAAITGSFVALALALNKLVEEGILPVIPLKDFVAAVSVGIV-DGEEILD 174
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKM 601
L+ D DM+ + G+ N +Q + + + +Q L A+KG+ ++E
Sbjct: 175 LN-FEEDSKALVDMNVVMTGS-NRFVEVQGTGEEATFSMEELQRLLTLAQKGIRELIELQ 232
Query: 602 K 602
K
Sbjct: 233 K 233
>TIGR_CMR|CPS_0112 [details] [associations]
symbol:CPS_0112 "ribonuclease PH" species:167879
"Colwellia psychrerythraea 34H" [GO:0004549 "tRNA-specific
ribonuclease activity" evidence=ISS] [GO:0042780 "tRNA 3'-end
processing" evidence=ISS] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 RefSeq:YP_266880.1
ProteinModelPortal:Q48AN3 SMR:Q48AN3 STRING:Q48AN3 GeneID:3519509
KEGG:cps:CPS_0112 PATRIC:21463641
BioCyc:CPSY167879:GI48-215-MONOMER Uniprot:Q48AN3
Length = 237
Score = 137 (53.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 60/243 (24%), Positives = 104/243 (42%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL--GTSRDEQKIDALMGE 435
+R R + IRP++I GS L GDT+ + AT+ G R L G+
Sbjct: 1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPR------FLKGQ 54
Query: 436 FTDSFMLHYNMPPFATGDIGRIGVPKRREIGH----GRLAKRALLPVLPNNNKFNYSIRL 491
Y M P +T R ++ G RL RAL + +I +
Sbjct: 55 GKGWVTAEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISV 114
Query: 492 VSEITESNGSSSMASVCGGCLALLDA-------GV----PISEHVAGIAMGLIKDGEKVV 540
++ +++G + A++ G C+AL+DA + P+ +A +++G+ K GE V
Sbjct: 115 DCDVIQADGGTRTAAITGACVALVDALNYMRAKDIIKTNPLKHMIAAVSVGIYK-GEPV- 172
Query: 541 ILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 599
+D+ ED D D V T G + +Q + +++ +Q L AK G++ + +
Sbjct: 173 --ADLDYPEDSAADTDMNVVMTDTGKLIEVQGTAEEEPFSFEEMQAMLELAKNGINELFD 230
Query: 600 KMK 602
K
Sbjct: 231 LQK 233
>UNIPROTKB|Q71X59 [details] [associations]
symbol:LMOf2365_2340 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
ProtClustDB:PRK08059 Uniprot:Q71X59
Length = 117
Score = 121 (47.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGI 743
++G V +G + + +GA + + + GL+HIS+I+ V I DFL+ Q+V+VK+L I
Sbjct: 5 KVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDI 64
Query: 744 DD-RGRIKLSM 753
D+ + +I LS+
Sbjct: 65 DEEKNKISLSI 75
>TIGR_CMR|APH_0768 [details] [associations]
symbol:APH_0768 "ribosomal protein S15" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0019843 Gene3D:1.10.287.10
InterPro:IPR009068 SUPFAM:SSF47060 HAMAP:MF_01343_B
TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956 eggNOG:COG0184
RefSeq:YP_505347.1 ProteinModelPortal:Q2GJV4 STRING:Q2GJV4
GeneID:3930179 KEGG:aph:APH_0768 PATRIC:20950228 OMA:LFMKNSK
ProtClustDB:PRK05626 BioCyc:APHA212042:GHPM-784-MONOMER
PANTHER:PTHR23321:SF10 Uniprot:Q2GJV4
Length = 93
Score = 121 (47.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 1 MTIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMK 60
M+I + K+ +I + + DTGS VQ A+L+ RI +L H ++H KD+H RRGL+++
Sbjct: 1 MSITPSKKSELISEYRIKEGDTGSAYVQCAILSERIRNLTEHLRIHKKDYHCRRGLMVLV 60
Query: 61 GNFLFN-KIIKSFKYGS 76
+ IK+ KYGS
Sbjct: 61 CKRRKRLQYIKN-KYGS 76
>UNIPROTKB|Q9KVD6 [details] [associations]
symbol:rph "Ribonuclease PH" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004540 "ribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006401
GO:GO:0008033 GO:GO:0000049 GO:GO:0004540 InterPro:IPR020568
SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666
InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549 KO:K00989
OMA:MLPRATG ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 PIR:D82350 RefSeq:NP_229867.2
ProteinModelPortal:Q9KVD6 SMR:Q9KVD6 DNASU:2614709 GeneID:2614709
KEGG:vch:VC0210 PATRIC:20079464 Uniprot:Q9KVD6
Length = 238
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 64/245 (26%), Positives = 105/245 (42%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDA-LMGEF 436
+R DNR + +RPI I GS L G+T+ L A++ E+ + L G+
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI-----EEGVPRWLKGQG 55
Query: 437 TDSFMLHYNMPPFATGDIGRIGVPKRREIGHG----RLAKRALLPVLPNNNKFNYSIRLV 492
Y M P AT R ++ G RL R+L V+ I +
Sbjct: 56 KGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 493 SEITESNGSSSMASVCGGCLALLDAGV-----------PISEHVAGIAMGLIKDGEKVVI 541
++ +++G + AS+ G +AL DA P+ HVA +++G++ GE V
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GEDV-- 171
Query: 542 LSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
L D+ ED D D V T G + +Q + +++ + L AKKG++ I+
Sbjct: 172 LCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
Query: 601 MKTEV 605
K +
Sbjct: 232 QKASL 236
>TIGR_CMR|VC_0210 [details] [associations]
symbol:VC_0210 "ribonuclease PH" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
[GO:0008033 "tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006401 GO:GO:0008033 GO:GO:0000049
GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 PIR:D82350
RefSeq:NP_229867.2 ProteinModelPortal:Q9KVD6 SMR:Q9KVD6
DNASU:2614709 GeneID:2614709 KEGG:vch:VC0210 PATRIC:20079464
Uniprot:Q9KVD6
Length = 238
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 64/245 (26%), Positives = 105/245 (42%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDA-LMGEF 436
+R DNR + +RPI I GS L G+T+ L A++ E+ + L G+
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASI-----EEGVPRWLKGQG 55
Query: 437 TDSFMLHYNMPPFATGDIGRIGVPKRREIGHG----RLAKRALLPVLPNNNKFNYSIRLV 492
Y M P AT R ++ G RL R+L V+ I +
Sbjct: 56 KGWVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVD 115
Query: 493 SEITESNGSSSMASVCGGCLALLDAGV-----------PISEHVAGIAMGLIKDGEKVVI 541
++ +++G + AS+ G +AL DA P+ HVA +++G++ GE V
Sbjct: 116 CDVIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGIL--GEDV-- 171
Query: 542 LSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
L D+ ED D D V T G + +Q + +++ + L AKKG++ I+
Sbjct: 172 LCDLEYVEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
Query: 601 MKTEV 605
K +
Sbjct: 232 QKASL 236
>TIGR_CMR|DET_0969 [details] [associations]
symbol:DET_0969 "ribosomal protein S15" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019843 Gene3D:1.10.287.10
InterPro:IPR009068 SUPFAM:SSF47060 HAMAP:MF_01343_B
TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956 eggNOG:COG0184
ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10 OMA:LKMVSRR
RefSeq:YP_181692.1 ProteinModelPortal:Q3Z7V7 STRING:Q3Z7V7
GeneID:3229687 KEGG:det:DET0969 PATRIC:21608987
BioCyc:DETH243164:GJNF-970-MONOMER Uniprot:Q3Z7V7
Length = 87
Score = 120 (47.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 8 KASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMMKG 61
K+ II + +++NDTGS EVQVALLT+RI+ L H + D H++R L+ + G
Sbjct: 6 KSLIINEFKKSENDTGSTEVQVALLTARIHQLTTHMIANKHDFHTKRSLLTLVG 59
>UNIPROTKB|H7C3C5 [details] [associations]
symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006402 "mRNA catabolic process"
evidence=IEA] InterPro:IPR012162 InterPro:IPR015848 Pfam:PF03726
InterPro:IPR001247 Pfam:PF01138 GO:GO:0003723 GO:GO:0006396
GO:GO:0006402 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
EMBL:AC015982 GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252
SUPFAM:SSF46915 HGNC:HGNC:23166 ProteinModelPortal:H7C3C5
Ensembl:ENST00000415489 Uniprot:H7C3C5
Length = 139
Score = 117 (46.2 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 367 KIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS--- 423
++ R +L++ R D R + +R +S + HGS+LF RG TQ L T +
Sbjct: 38 EVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 97
Query: 424 -RDEQKIDALMGEFTDSFMLHYNM 446
+ +Q I A+ G +FMLHY +
Sbjct: 98 IKSDQVITAINGIKDKNFMLHYEV 121
>TAIR|locus:2075351 [details] [associations]
symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
Genevestigator:Q9LX74 Uniprot:Q9LX74
Length = 239
Score = 132 (51.5 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 43/162 (26%), Positives = 73/162 (45%)
Query: 379 RIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438
R D R N +RP++ IL R HGS+ +++GDT+ L A G +K E +
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLA-AVYGPKAGTKK-----NENAE 58
Query: 439 SFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITES 498
P +G IG+ V K E+ + KR + + N + ++ ++
Sbjct: 59 KACFEVIWKP-KSGQIGK--VEKEYEM----ILKRTIQSICVLTVNPNTTTSVIIQVVHD 111
Query: 499 NGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+GS ++ C AL+DAG+P+ I L ++G V+
Sbjct: 112 DGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVL 153
>UNIPROTKB|P0CG19 [details] [associations]
symbol:rph "RNase PH monomer" species:83333 "Escherichia
coli K-12" [GO:0004549 "tRNA-specific ribonuclease activity"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IDA] [GO:0042780 "tRNA 3'-end
processing" evidence=IDA] [GO:0009022 "tRNA nucleotidyltransferase
activity" evidence=IEA;IDA] [GO:0006399 "tRNA metabolic process"
evidence=EXP] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0004527
EMBL:L10328 GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:V01578 Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336
PROSITE:PS01277 GO:GO:0042780 GO:GO:0004549 KO:K00989 GO:GO:0009022
HAMAP:MF_00564 TIGRFAMs:TIGR01966 EMBL:X72920 PIR:A04470
RefSeq:YP_001491547.1 ProteinModelPortal:P0CG19 SMR:P0CG19
IntAct:P0CG19 EnsemblBacteria:EBESCT00000003143
EnsemblBacteria:EBESCT00000018485 GeneID:948156 KEGG:eco:b3643
PATRIC:32122773 EcoGene:EG10863 BioCyc:EcoCyc:EG10863-MONOMER
BioCyc:MetaCyc:EG10863-MONOMER Uniprot:P0CG19
Length = 228
Score = 131 (51.2 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 59/230 (25%), Positives = 100/230 (43%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFT 437
+R R N +RP+++ GS L GDT+ L A++ +E L G+
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASI----EEGVPRFLKGQGQ 56
Query: 438 DSFMLHYNMPPFATGDIGRIGVPKRREIGHG----RLAKRALLPVLPNNNKFNYSIRLVS 493
Y M P +T K ++ G RL RAL + ++I L
Sbjct: 57 GWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDC 116
Query: 494 EITESNGSSSMASVCGGCLALLDA-------GV----PISEHVAGIAMGLIKDGEKVVIL 542
++ +++G + AS+ G C+AL+DA G P+ VA +++G++ +GE V L
Sbjct: 117 DVLQADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIV-NGEAVCDL 175
Query: 543 SDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAK 591
+ ED + D V T +G I +Q + T++ + I L A+
Sbjct: 176 EYV---EDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALAR 222
>UNIPROTKB|P28619 [details] [associations]
symbol:rph "Ribonuclease PH" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0031125 "rRNA 3'-end
processing" evidence=IMP] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0008033 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0000049 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0031125 EMBL:Z75208 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 EMBL:M85163 PIR:A44914 RefSeq:NP_390715.1
PDB:1OYP PDB:1OYR PDB:1OYS PDBsum:1OYP PDBsum:1OYR PDBsum:1OYS
ProteinModelPortal:P28619 SMR:P28619
EnsemblBacteria:EBBACT00000001457 GeneID:937463 KEGG:bsu:BSU28370
PATRIC:18977558 GenoList:BSU28370 BioCyc:BSUB:BSU28370-MONOMER
EvolutionaryTrace:P28619 Uniprot:P28619
Length = 245
Score = 132 (51.5 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 62/242 (25%), Positives = 111/242 (45%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDA-LMGEF 436
+R D R +++RPI+ + GS L T G+T+ + A++ E ++ L G
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASV-----EDRVPPFLRGGG 55
Query: 437 TDSFMLHYNMPPFATGDI----GRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLV 492
Y+M P AT G R + RL RAL V+ +I +
Sbjct: 56 KGWITAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWID 115
Query: 493 SEITESNGSSSMASVCGGCLA-------LLDAGV----PISEHVAGIAMGLIKDGEKVVI 541
++ +++G + AS+ G LA L+ AG PI++ +A I++G+ D E+ ++
Sbjct: 116 CDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGI--DKEQGIL 173
Query: 542 LSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGITYDIIQIALYKAKKGLSYILEK 600
L D+ +ED ++D V T +G LQ + + + + L A+KG+ +++K
Sbjct: 174 L-DLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDK 232
Query: 601 MK 602
K
Sbjct: 233 QK 234
>FB|FBgn0032487 [details] [associations]
symbol:Ski6 "Ski6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652 "nuclear lamina"
evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0005652 GO:GO:0000176 eggNOG:COG0689
SUPFAM:SSF55666 EMBL:AY071632 ProteinModelPortal:Q8SYC8 SMR:Q8SYC8
IntAct:Q8SYC8 STRING:Q8SYC8 PaxDb:Q8SYC8 PRIDE:Q8SYC8
FlyBase:FBgn0032487 InParanoid:Q8SYC8 OrthoDB:EOG4Z08NJ
ArrayExpress:Q8SYC8 Bgee:Q8SYC8 Uniprot:Q8SYC8
Length = 246
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 56/232 (24%), Positives = 108/232 (46%)
Query: 375 DKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMG 434
++GLR+D R +++R I + G+ + GS+ +G+T+ L A G + + G
Sbjct: 10 EQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLA-AVYGPHQAK-------G 61
Query: 435 EFTDSFM-LHYNMPPFATGDIGRIGVPK--RREIGHGRLAKRALLPVLPNNNKFNYSIRL 491
T+S + Y+ F+T + R P+ R+ + ++AL + + I +
Sbjct: 62 NQTESVINCQYSQATFSTAE--RKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDI 119
Query: 492 VSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDR 551
E+ + +G++ ++ LAL+DAG+ ++E + L K + L+DI E+
Sbjct: 120 YVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQFEEV 176
Query: 552 CGDMDFKVAG--TVNGITALQMDIKIFGITY--DIIQIALYKAKKGLSYILE 599
G VA T I L+M + F I + +I+ A+ ++ + ILE
Sbjct: 177 SGGPKLTVAALPTAEKIAFLEMSER-FHIDHLGTVIETAMAGCRE-IRDILE 226
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 136 (52.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 62/238 (26%), Positives = 105/238 (44%)
Query: 528 IAMGLIKDGEKVVILSDI-LGDEDRCGDMDFK-VAGTVNGITALQMDIKIFGIT--YDII 583
I G + E +L D L E FK AG + Q+D+ + + +
Sbjct: 23 IVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALDAVEDGFGET 82
Query: 584 QIALYKAKKGLSYI-LEKMKTEVPKCKNELSKFAPRLITIKID------PSKIRDVIGKG 636
Q++ KAK+ ++I LEK E ++ T++++ P + DV
Sbjct: 83 QLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSLVDVRPIR 142
Query: 637 GSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRL 696
+ E I ++ + + S +V E+ ++L E++Q G GIV L
Sbjct: 143 DTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNL 202
Query: 697 FDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGID-DRGRIKLSM 753
D+GA + L G DGLLHI+ ++ KRV ++ + ++ VKVL D DR R+ L +
Sbjct: 203 TDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGL 259
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 136 (52.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 62/238 (26%), Positives = 105/238 (44%)
Query: 528 IAMGLIKDGEKVVILSDI-LGDEDRCGDMDFK-VAGTVNGITALQMDIKIFGIT--YDII 583
I G + E +L D L E FK AG + Q+D+ + + +
Sbjct: 23 IVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEVQVGSQVDVALDAVEDGFGET 82
Query: 584 QIALYKAKKGLSYI-LEKMKTEVPKCKNELSKFAPRLITIKID------PSKIRDVIGKG 636
Q++ KAK+ ++I LEK E ++ T++++ P + DV
Sbjct: 83 QLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTVELNGIRAFLPGSLVDVRPIR 142
Query: 637 GSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRL 696
+ E I ++ + + S +V E+ ++L E++Q G GIV L
Sbjct: 143 DTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTEVKGIVKNL 202
Query: 697 FDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGID-DRGRIKLSM 753
D+GA + L G DGLLHI+ ++ KRV ++ + ++ VKVL D DR R+ L +
Sbjct: 203 TDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKVLKFDRDRTRVSLGL 259
>POMBASE|SPAC3G9.10c [details] [associations]
symbol:rrp41 "exosomal 3'-to-5' phosphorolytic
exoribonuclease Rrp41 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISO] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
PomBase:SPAC3G9.10c Pfam:PF01138 GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666
EMBL:D89141 PIR:T11646 PIR:T11740 RefSeq:NP_594082.1
ProteinModelPortal:O42872 IntAct:O42872 STRING:O42872
EnsemblFungi:SPAC3G9.10c.1 GeneID:2543451 KEGG:spo:SPAC3G9.10c
OMA:AIMPKTG OrthoDB:EOG45MRFG NextBio:20804464 Uniprot:O42872
Length = 242
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 54/237 (22%), Positives = 107/237 (45%)
Query: 372 QILD-KGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKID 430
+IL +GLR D R +++R R GI P +GS+ G+T+ L + G S K
Sbjct: 5 EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVD-GPSEPVIKSK 63
Query: 431 ALMGEFTDSFM-LHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYS- 488
A +F+ + N+ F+T D+ + RR I LA + + + S
Sbjct: 64 ARADR---TFVNVEINIASFSTIDVKKRFKSDRR-IQLQCLALQNTFEEIIQTELYPRSQ 119
Query: 489 IRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGD 548
I + + + +G+ + + LAL+DAG+P+ + V G++ + + ++ L+ + +
Sbjct: 120 ISVYLHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIV-ESDMLLDLNSL--E 176
Query: 549 EDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEV 605
E + V G + + +Q++ + D ++ + A G +I M++ V
Sbjct: 177 ESALSWLTVAVLGNIKKVVYMQLETSMH---LDYLESVMNMAIAGSEHIYNTMQSAV 230
>TIGR_CMR|NSE_0058 [details] [associations]
symbol:NSE_0058 "ribosomal protein S15" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000589 InterPro:IPR005290 Pfam:PF00312 PROSITE:PS00362
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:1.10.287.10
InterPro:IPR009068 SUPFAM:SSF47060 HAMAP:MF_01343_B
TIGRFAMs:TIGR00952 HOGENOM:HOG000040097 KO:K02956 eggNOG:COG0184
ProtClustDB:PRK05626 PANTHER:PTHR23321:SF10 OMA:INRLNEH
RefSeq:YP_505959.1 ProteinModelPortal:Q2GEY7 STRING:Q2GEY7
GeneID:3932204 KEGG:nse:NSE_0058 PATRIC:22680231
BioCyc:NSEN222891:GHFU-95-MONOMER Uniprot:Q2GEY7
Length = 86
Score = 110 (43.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 30/66 (45%), Positives = 37/66 (56%)
Query: 8 KASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGL--IMMKGNFLF 65
KA +I NDTGS VQVAL T RIN+L H + KD+ SR GL I+ K L
Sbjct: 5 KAEVIKKFRTADNDTGSAFVQVALFTRRINNLTRHLQGFKKDYSSRLGLLKIISKRRRLL 64
Query: 66 NKIIKS 71
N + K+
Sbjct: 65 NYLAKN 70
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 134 (52.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 61/230 (26%), Positives = 105/230 (45%)
Query: 531 GLIKDGEKVVILSDILGDEDRCGDMDFKVA-GTVNGI--TALQMDIKIFGITYDIIQIAL 587
GL +G ++ S+ +E GD F V + NG T L + + ++ A
Sbjct: 41 GLKSEG--IIPASEFRNEEPHVGDEFFVVIEASDNGFGETRLSREKARRAKAWSELEKA- 97
Query: 588 YKAKKGLS-YILEKMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEE 646
YKA + + I+E++K N + F P + +D +RD G + + +
Sbjct: 98 YKAGEMVKGVIIERVKGGFTVDLNSVRAFLPGSL---VDVKPVRD---PGYLEDKEIDFK 151
Query: 647 TGTQIDINDEGIITI--ASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIR 704
++D ++ A + + E + R+E+L E +I G++ + D+GA +
Sbjct: 152 I-IKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEI----KGVIKNITDYGAFVD 206
Query: 705 ILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGID-DRGRIKLSM 753
L G DGLLHI+ ++ RV +D L +V VKVL D D+ R+ L M
Sbjct: 207 -LGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGM 255
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 134 (52.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 33/94 (35%), Positives = 53/94 (56%)
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
+ S +V E+ + L E++Q G+ GIV L D+GA + L G DGLLHI+ ++
Sbjct: 167 VVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVD-LGGVDGLLHITDMAW 225
Query: 721 KRVNIITDFLKENQKVRVKVLGID-DRGRIKLSM 753
KRV ++ + ++ VKVL D +R R+ L +
Sbjct: 226 KRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGL 259
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 133 (51.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 661 IASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS 720
+ S +V E ++L ES+ G+ GIV L D+GA + L G DGLLHI+ ++
Sbjct: 167 VVSRRAVIEAEGSAERDELLESLAEGQEVKGIVKNLTDYGAFVD-LGGIDGLLHITDMAW 225
Query: 721 KRVNIITDFLKENQKVRVKVLGID-DRGRIKLSM 753
KRV ++ + +++VKVL D +R R+ L M
Sbjct: 226 KRVKHPSEIVNVGDEIQVKVLKFDRERTRVSLGM 259
>CGD|CAL0004768 [details] [associations]
symbol:PRP22 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071021
"U2-type post-spliceosomal complex" evidence=IEA] [GO:0000350
"generation of catalytic spliceosome for second transesterification
step" evidence=IEA] [GO:0000390 "spliceosomal complex disassembly"
evidence=IEA] [GO:0000386 "second spliceosomal transesterification
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
CGD:CAL0004768 GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0008026 EMBL:AACQ01000012 InterPro:IPR022967 SMART:SM00316
KO:K12818 EMBL:AACQ01000011 RefSeq:XP_721941.1 RefSeq:XP_722102.1
ProteinModelPortal:Q5AJY8 STRING:Q5AJY8 GeneID:3636272
GeneID:3636404 KEGG:cal:CaO19.11516 KEGG:cal:CaO19.4033
Uniprot:Q5AJY8
Length = 996
Score = 135 (52.6 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS--SKRVNIITDFLKENQKVRVKVL 741
Q+GK+Y+G+V + ++GA I+I G GL HISQ+S RV T+ L NQKV VKV+
Sbjct: 74 QVGKIYSGVVQSVTNYGAFIKI-EGTSGLCHISQMSFDGSRVES-TNVLAPNQKVFVKVI 131
Query: 742 GIDDRG-RIKLSM 753
I RI LSM
Sbjct: 132 DIQTHANRISLSM 144
>TIGR_CMR|BA_4715 [details] [associations]
symbol:BA_4715 "ribonuclease PH" species:198094 "Bacillus
anthracis str. Ames" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
RefSeq:NP_846927.1 RefSeq:YP_021364.1 RefSeq:YP_030624.1 PDB:3DD6
PDBsum:3DD6 ProteinModelPortal:Q81LA9 SMR:Q81LA9 IntAct:Q81LA9
DNASU:1088544 EnsemblBacteria:EBBACT00000011295
EnsemblBacteria:EBBACT00000015124 EnsemblBacteria:EBBACT00000023463
GeneID:1088544 GeneID:2815981 GeneID:2851699 KEGG:ban:BA_4715
KEGG:bar:GBAA_4715 KEGG:bat:BAS4377 HOGENOM:HOG000229516 KO:K00989
OMA:MLPRATG ProtClustDB:PRK00173
BioCyc:BANT260799:GJAJ-4434-MONOMER
BioCyc:BANT261594:GJ7F-4584-MONOMER EvolutionaryTrace:Q81LA9
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 Uniprot:Q81LA9
Length = 245
Score = 125 (49.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 55/204 (26%), Positives = 92/204 (45%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALM-GEF 436
+R+D R ++R I I T L GS L GDT+ + AT+ E+++ M GE
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATI-----EERVPPFMRGEG 55
Query: 437 TDSFMLHYNMPPFATGDIGRIGVPKRREIGHG----RLAKRALLPVLPNNNKFNYSIRLV 492
Y M P AT K + G RL RAL V+ ++ +
Sbjct: 56 KGWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWID 115
Query: 493 SEITESNGSSSMASVCGGCLA-------LLDAG----VPISEHVAGIAMGLIKDGEKVVI 541
++ +++G + AS+ G +A LL A +P+ +++A ++G+++ E+ V+
Sbjct: 116 CDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVE--EQGVV 173
Query: 542 LSDILGDEDRCGDMDFKVAGTVNG 565
L D+ ED D+D V T G
Sbjct: 174 L-DLNYAEDSKADVDMNVIMTGKG 196
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 130 (50.8 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 42/145 (28%), Positives = 70/145 (48%)
Query: 610 NELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSG 669
N + F P + +D +RD + G + E ++D ++ S +V
Sbjct: 125 NGIRAFLPGSL---VDVRPVRDTLHLEGKEL----EFKVIKLDQKRNNVVV--SRRAVIE 175
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDF 729
E ++L E++Q G GIV L D+GA + L G DGLLHI+ ++ KRV ++
Sbjct: 176 SENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVD-LGGVDGLLHITDMAWKRVKHPSEI 234
Query: 730 LKENQKVRVKVLGID-DRGRIKLSM 753
+ ++ VKVL D +R R+ L +
Sbjct: 235 VNVGDEITVKVLKFDRERTRVSLGL 259
>TAIR|locus:2145860 [details] [associations]
symbol:RPS1 "ribosomal protein S1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
Genevestigator:Q93VC7 Uniprot:Q93VC7
Length = 416
Score = 128 (50.1 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 32/69 (46%), Positives = 42/69 (60%)
Query: 685 IGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGID 744
IG V G+V L +GA I I G +GLLH+SQIS RV+ I L+ ++V +L D
Sbjct: 263 IGSVVLGVVQSLKPYGAFIDI-GGINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHD 321
Query: 745 -DRGRIKLS 752
DRGR+ LS
Sbjct: 322 RDRGRVSLS 330
>TIGR_CMR|GSU_1200 [details] [associations]
symbol:GSU_1200 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
Length = 402
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 677 EKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISS-KRVNIITDFLKENQK 735
E + E G +TG V RL FGA + + G DGL+HIS++ + KR+ + LKE
Sbjct: 280 EGIAERFPEGSYHTGTVARLAPFGAFVTLAPGIDGLIHISKLGAGKRIAHPREVLKEGDA 339
Query: 736 VRVKVLGIDDRGRIKLSM 753
V V V G+D R +LS+
Sbjct: 340 VEVTVEGVDRESR-RLSL 356
Score = 123 (48.4 bits), Expect = 0.00028, P = 0.00028
Identities = 32/104 (30%), Positives = 55/104 (52%)
Query: 651 IDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKD 710
++ + G + S ++ +E +++ E L ++++ G TG V RL FGA + I G +
Sbjct: 169 VEFAERGRNIVLSHRAILEEEERQKREALKDTLKEGTTLTGTVTRLMPFGAFVDI-GGVE 227
Query: 711 GLLHISQISSKRVNIITDFLKENQKVRVKVLGID-DRGRIKLSM 753
GL+ IS+ RV I D L ++V V ID + +I LS+
Sbjct: 228 GLIPISEAGWSRVKEIGDVLSVGEQVTALVKRIDWENNKISLSL 271
>TIGR_CMR|SPO_0008 [details] [associations]
symbol:SPO_0008 "ribonuclease PH" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004549 "tRNA-specific ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008033
GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:YP_165281.1 HSSP:P28619
ProteinModelPortal:Q5LWF6 SMR:Q5LWF6 GeneID:3193125
KEGG:sil:SPO0008 PATRIC:23373245 Uniprot:Q5LWF6
Length = 237
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 62/239 (25%), Positives = 105/239 (43%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALM-GEF 436
+R R ++++RP+SI TG GS L GDT L AT+ E ++ + G
Sbjct: 1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATI-----EDRVPPFIKGSG 55
Query: 437 TDSFMLHYNMPPFATGDIGR----IGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLV 492
Y M P AT R G R + RL RAL + I +
Sbjct: 56 LGWVTAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVD 115
Query: 493 SEITESNGSSSMASVCGGCLAL-------LDAGV----PISEHVAGIAMGLIKDGEKVVI 541
++ +++G + AS+ GG +AL + AG P+ + VA ++ G+ G+ V+
Sbjct: 116 CDVIQADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAVSCGIYA-GQPVLD 174
Query: 542 LSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQI--ALYKAKKGLSYIL 598
L D D + D +F + G+ + +QM + G ++ Q+ L A+KG+ ++
Sbjct: 175 L-DYPEDSEAGVDGNFIMTGS-GKLIEVQMSAE--GSVFNRAQLDQLLGLAEKGVGELV 229
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 29/84 (34%), Positives = 54/84 (64%)
Query: 671 EAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFL 730
+++ R E L ++Q G + G+V + +FGA + L G DGL+H+S++S K ++ ++ +
Sbjct: 195 QSEVRSEFLN-NLQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVV 252
Query: 731 KENQKVRVKVLGID-DRGRIKLSM 753
+ +V V+VL +D DR R+ LS+
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSL 276
Score = 122 (48.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 685 IGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGID 744
IG++ G V +L FGA +R+ G +GL+HIS+++ + V + + VKV+ ID
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352
Query: 745 -DRGRIKLSM 753
+R RI LS+
Sbjct: 353 LERRRISLSL 362
Score = 51 (23.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 47/213 (22%), Positives = 92/213 (43%)
Query: 152 TIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDP-DIASIIGVSTALSISELPFLG 210
TI+ +DR L GY E I LS+ +DP ++ S+ AL +++ G
Sbjct: 42 TIVK--VDRD-EVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKEG 98
Query: 211 PLGVAKVGYIDGKYILN-PTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAII 269
L ++K +Y T E LK+ D V GT +I V L DI L +
Sbjct: 99 RLILSKKR---AQYERAWGTIEALKEK--DEAVKGT---VIEVVKGGLIL--DIGLRGFL 148
Query: 270 FGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIR 329
+ + + +L +G K++ I DK + +++ + +++++ +
Sbjct: 149 ---PASLVEMRRVRDLQPYIG-KEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLN 204
Query: 330 DLTFKNISKDIYSSLIDNENLTIDINDINCILY 362
+L I K + SS++ N +D+ ++ +++
Sbjct: 205 NLQKGTIRKGVVSSIV-NFGAFVDLGGVDGLVH 236
>SGD|S000000815 [details] [associations]
symbol:PRP22 "DEAH-box RNA-dependent ATPase/ATP-dependent RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000350 "generation of catalytic spliceosome for second
transesterification step" evidence=IDA;IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000386 "second spliceosomal transesterification
activity" evidence=IMP;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000390 "spliceosomal complex disassembly"
evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0071021 "U2-type post-spliceosomal complex"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 Pfam:PF00271 Pfam:PF00575
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126 PROSITE:PS51194
SMART:SM00490 SMART:SM00847 SGD:S000000815 GO:GO:0005524 KO:K01897
GO:GO:0003723 EMBL:BK006939 EMBL:U18778 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0004004 HOGENOM:HOG000175261 GO:GO:0071007 InterPro:IPR022967
SMART:SM00316 GO:GO:0000390 GeneTree:ENSGT00700000104241 KO:K12818
GO:GO:0000350 RefSeq:NP_010931.3 GeneID:856734 KEGG:sce:YER015W
OrthoDB:EOG45TGW9 EMBL:X58681 PIR:S13643 RefSeq:NP_010929.3
ProteinModelPortal:P24384 SMR:P24384 DIP:DIP-655N IntAct:P24384
MINT:MINT-648209 STRING:P24384 PaxDb:P24384 EnsemblFungi:YER013W
GeneID:856732 KEGG:sce:YER013W CYGD:YER013w OMA:QITQYLD
NextBio:982846 Genevestigator:P24384 GermOnline:YER013W
GO:GO:0071021 Uniprot:P24384
Length = 1145
Score = 130 (50.8 bits), Expect = 0.00021, P = 0.00021
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGK----DGLLHISQISSKRVNI 725
+E ++IE L S + KVY G V + FG ++I + DGL+HIS++S +R
Sbjct: 162 EEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLVHISEMSDQRTLD 221
Query: 726 ITDFLKENQKVRVKVLGIDDRGRIKLSM 753
D +++ Q + V+V+ I + G+I LSM
Sbjct: 222 PHDVVRQGQHIFVEVIKIQNNGKISLSM 249
>POMBASE|SPAC10F6.02c [details] [associations]
symbol:prp22 "ATP-dependent RNA helicase Prp22"
species:4896 "Schizosaccharomyces pombe" [GO:0000390 "spliceosomal
complex disassembly" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
PomBase:SPAC10F6.02c GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005681 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
InterPro:IPR011709 Pfam:PF07717 GO:GO:0004004 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GO:GO:0000390 KO:K12818
OMA:NAWCYEN PIR:T37496 RefSeq:NP_593253.1 ProteinModelPortal:O42643
IntAct:O42643 STRING:O42643 PRIDE:O42643
EnsemblFungi:SPAC10F6.02c.1 GeneID:2542978 KEGG:spo:SPAC10F6.02c
OrthoDB:EOG45TGW9 NextBio:20804011 Uniprot:O42643
Length = 1168
Score = 110 (43.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 663 SFNSVSGQEAKRRIEK--LTESVQIGKVYTGIVLRLFDFGAIIRILSG----KDGLLHIS 716
S S+SGQ R + L + + +Y+G+V + DFGA + L G DGL+HIS
Sbjct: 182 SRTSISGQSHSSRSSRGPLLNAPTLYGIYSGVVSGIKDFGAFVT-LDGFRKRTDGLVHIS 240
Query: 717 QIS-SKRVNIITDFLKENQKVRVKVLGIDDRG-RIKLSM 753
I + R++ ++ + Q V VKV+ ID+ RI LSM
Sbjct: 241 NIQLNGRLDHPSEAVSYGQPVFVKVIRIDESAKRISLSM 279
Score = 71 (30.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 34/104 (32%), Positives = 48/104 (46%)
Query: 300 VKDKTLISKIINISEHKIRKAY-QIKNK------QIRDLTFKNIS---KDIY-SSLIDNE 348
+ D TL IIN+ H K Y + KN + D +NIS K+I I +
Sbjct: 26 IDDNTLAEFIINL--HDQSKNYDEFKNNVLSCGGEFTDSFLQNISRLIKEIKPKDDIPTD 83
Query: 349 NLTIDINDINCILYDLESKIIRKQILDK---GLRIDNRGVNDIR 389
N+ N +N +DL+SK + KQ K GL I N N++R
Sbjct: 84 NVNNGSNSVNGASHDLDSKDVDKQHQRKMFPGLSIPN-STNNLR 126
>TIGR_CMR|CBU_0299 [details] [associations]
symbol:CBU_0299 "ribonuclease PH" species:227377 "Coxiella
burnetii RSA 493" [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0008033 "tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 RefSeq:NP_819342.2
ProteinModelPortal:Q83EL9 SMR:Q83EL9 PRIDE:Q83EL9 GeneID:1208181
KEGG:cbu:CBU_0299 PATRIC:17929293
BioCyc:CBUR227377:GJ7S-306-MONOMER Uniprot:Q83EL9
Length = 237
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 57/239 (23%), Positives = 105/239 (43%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFT 437
+R R N++RP+S T GS L T G+T+ + A++ ++ G T
Sbjct: 1 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKNSEQGWLT 60
Query: 438 DSF-MLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEIT 496
+ ML + + R G R + RL R+L L Y+I + ++
Sbjct: 61 AEYGMLPRSTHSRMDREASR-GKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITIDCDVI 119
Query: 497 ESNGSSSMASVCGGCLALLDA-------GV----PISEHVAGIAMGLIKDGEKVVILSDI 545
+++G + A++ G C+A+++A G+ P+ VA +++G+ K V +L D+
Sbjct: 120 QADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKG---VPVL-DL 175
Query: 546 LGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQI-ALYK-AKKGLSYILEKMK 602
ED D V T N +++ G + ++ AL A+ G+ I+EK +
Sbjct: 176 DYAEDSNAHTDMNVVMTDND-AFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQ 233
>DICTYBASE|DDB_G0291183 [details] [associations]
symbol:dhx8 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0006396 "RNA processing" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
dictyBase:DDB_G0291183 GO:GO:0005524 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GenomeReviews:CM000154_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
InterPro:IPR011709 Pfam:PF07717 GO:GO:0004004 EMBL:AAFI02000175
InterPro:IPR022967 SMART:SM00316 KO:K12818 OMA:NAWCYEN
RefSeq:XP_635385.1 HSSP:P05055 ProteinModelPortal:Q54F05
EnsemblProtists:DDB0233399 GeneID:8628033 KEGG:ddi:DDB_G0291183
ProtClustDB:CLSZ2846610 Uniprot:Q54F05
Length = 1160
Score = 129 (50.5 bits), Expect = 0.00027, P = 0.00027
Identities = 35/89 (39%), Positives = 56/89 (62%)
Query: 670 QEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRI--LSGK-DGLLHISQISSKR--VN 724
Q +R I+K E + + K+Y G V + D+G + + ++G+ DGL+HISQI S R +N
Sbjct: 189 QNKRREIDK--EPI-LYKIYDGKVSSINDYGCFVTLEGIAGRRDGLVHISQILSGRTKLN 245
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+D +K NQ+V+VK+L + +I LSM
Sbjct: 246 HPSDVVKRNQQVKVKILSVAS-SKISLSM 273
>WB|WBGene00003393 [details] [associations]
symbol:mog-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 141 (54.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 680 TESVQIGKVYTGIVLRLFDFGAIIRILSG----KDGLLHISQISSKRVNIITDFLKENQK 735
+E +IGK+Y G V + FGA I L G ++GL+HISQI ++RV + D LK +
Sbjct: 228 SEVAEIGKIYDGRVNSIQSFGAFIT-LEGFRQKQEGLVHISQIRNERVQTVADVLKRGEN 286
Query: 736 VRVKVLGIDDRGRIKLSM 753
V+VKV I++ G+I LSM
Sbjct: 287 VKVKVNKIEN-GKISLSM 303
Score = 37 (18.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 533 IKDGEKVVILSD 544
IKD K+ ++SD
Sbjct: 90 IKDSHKITLISD 101
>UNIPROTKB|Q09530 [details] [associations]
symbol:mog-5 "Probable pre-mRNA-splicing factor
ATP-dependent RNA helicase mog-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 141 (54.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 680 TESVQIGKVYTGIVLRLFDFGAIIRILSG----KDGLLHISQISSKRVNIITDFLKENQK 735
+E +IGK+Y G V + FGA I L G ++GL+HISQI ++RV + D LK +
Sbjct: 228 SEVAEIGKIYDGRVNSIQSFGAFIT-LEGFRQKQEGLVHISQIRNERVQTVADVLKRGEN 286
Query: 736 VRVKVLGIDDRGRIKLSM 753
V+VKV I++ G+I LSM
Sbjct: 287 VKVKVNKIEN-GKISLSM 303
Score = 37 (18.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 533 IKDGEKVVILSD 544
IKD K+ ++SD
Sbjct: 90 IKDSHKITLISD 101
>UNIPROTKB|G4NFJ0 [details] [associations]
symbol:MGG_08807 "Pre-mRNA-splicing factor ATP-dependent
RNA helicase prp22" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR003029 InterPro:IPR003593
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 SMART:SM00847
GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CM001236 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR011709 Pfam:PF07717 GO:GO:0008026
InterPro:IPR022967 SMART:SM00316 KO:K12818 RefSeq:XP_003719164.1
ProteinModelPortal:G4NFJ0 EnsemblFungi:MGG_08807T0 GeneID:2678973
KEGG:mgr:MGG_08807 Uniprot:G4NFJ0
Length = 1207
Score = 127 (49.8 bits), Expect = 0.00046, P = 0.00046
Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 669 GQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRI--LSGK-DGLLHISQISS-KRVN 724
G + K + L ++ + KVY G V + DFGA + + + GK DGL+H+S ++ +RV+
Sbjct: 217 GYDQKPARQDLDDTPVLQKVYDGHVTGVKDFGAFVNLHGVKGKVDGLVHVSALTDGQRVS 276
Query: 725 IITDFLKENQKVRVKVLGIDDRGRIKLSM 753
+DF+ + Q V+VKV+ I+ RI LSM
Sbjct: 277 HPSDFVDKGQPVKVKVIKIEG-SRIGLSM 304
>TAIR|locus:2124024 [details] [associations]
symbol:RRP41L "AT4G27490" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0034968 "histone lysine methylation" evidence=RCA] [GO:0048449
"floral organ formation" evidence=RCA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0009845 "seed germination" evidence=IMP]
[GO:0090351 "seedling development" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009845 GO:GO:0008408
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 KO:K12587
OMA:GRLLCDF EMBL:BT029998 EMBL:BT030054 IPI:IPI00544536
RefSeq:NP_194479.2 UniGene:At.46035 ProteinModelPortal:A2RVK7
SMR:A2RVK7 IntAct:A2RVK7 STRING:A2RVK7 PaxDb:A2RVK7 PRIDE:A2RVK7
EnsemblPlants:AT4G27490.1 GeneID:828858 KEGG:ath:AT4G27490
TAIR:At4g27490 InParanoid:A2RVK7 PhylomeDB:A2RVK7
ProtClustDB:CLSN2680990 Genevestigator:A2RVK7 Uniprot:A2RVK7
Length = 256
Score = 116 (45.9 bits), Expect = 0.00066, P = 0.00066
Identities = 45/181 (24%), Positives = 90/181 (49%)
Query: 379 RIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438
R D RG + RP ++TG + GS+ G+T+ ++V+ G R+ +K A++ ++D
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTK-VIVSVFGP-RESKK--AMV--YSD 87
Query: 439 SFMLHYNMP--PFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEIT 496
L+ N+ FA+ +G+ G + + + +AL V+ ++ + + +
Sbjct: 88 VGRLNCNVSYTNFASPTLGQ-GTDHKE---YSSMLHKALEGVIMMETFPKTTVDVFALVL 143
Query: 497 ESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMD 556
ES GS + LAL DAG+ + + + +++ I G+ ++I D + +E+ C D
Sbjct: 144 ESGGSDLSVLISCASLALADAGIMMYDLITAVSVSCI--GKSLMI--DPVTEEEGCEDGS 199
Query: 557 F 557
F
Sbjct: 200 F 200
>RGD|1307861 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0035327
"transcriptionally active chromatin" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0045006
"DNA deamination" evidence=IEA;ISO] [GO:0051607 "defense response
to virus" evidence=IEA;ISO] [GO:0004532 "exoribonuclease activity"
evidence=ISO] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307861 GO:GO:0051607 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928 GO:GO:0045006
Pfam:PF03725 SUPFAM:SSF55666 CTD:56915 KO:K12590 OMA:VRETCEA
GeneTree:ENSGT00550000075002 IPI:IPI00201730 RefSeq:NP_001100963.2
UniGene:Rn.7400 Ensembl:ENSRNOT00000028026 GeneID:308441
KEGG:rno:308441 UCSC:RGD:1307861 NextBio:658885 ArrayExpress:F1LSX7
Uniprot:F1LSX7
Length = 235
Score = 115 (45.5 bits), Expect = 0.00068, P = 0.00068
Identities = 46/171 (26%), Positives = 69/171 (40%)
Query: 371 KQILDKGLRIDNRG-VNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
K + D G R V +R + +L R GS+ F +GDT L G + E K+
Sbjct: 10 KVLTDTGTESSPRSPVCSLRHFACEQNLLSRPDGSASFLQGDTSVLA-GVYGPA--EVKV 66
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
E + L + P +IG+P E RL + V+ SI
Sbjct: 67 SK---EIFNKATLEVILRP-------KIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSI 116
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVV 540
+V ++ GS + C+AL+DAGVP+ G+ L DG V+
Sbjct: 117 TVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVL 167
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 113 (44.8 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 42/158 (26%), Positives = 70/158 (44%)
Query: 231 EQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVG 290
+Q KK+H + + IIT + SK E+ E+ + IN N + N+
Sbjct: 29 QQEKKNH----IIQNDNEIITSTNNSKNEDEE--------EKEETEKNINKQNNNINNID 76
Query: 291 QKKVNWDPIVKDKTL-ISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN 349
+ VN D + K + K INI +KI Y IKNK+ + K I ++IYS + + +
Sbjct: 77 KDDVNKDNVGNHKKENLYKDINIENYKINVEYLIKNKKAEENIKKQIQEEIYSDIQNFDK 136
Query: 350 LTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVND 387
++N I + + I I K + N +N+
Sbjct: 137 TNKNVNKIRKLSLQENNNINNNHINGKNI---NNNINE 171
Score = 64 (27.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 521 ISEHVAGIAMGLIKDGEKVVILSDILG-DEDRCGDM--DFKVAGTVNGITALQMDIKIFG 577
I+E+ IA+GL +D ++V+ S I + D+ +FK G + G ++ + I
Sbjct: 285 IAEYA--IALGL-RDKQRVIYTSPIKALSNQKYRDLGEEFKDVGLITGDISINPEASIIV 341
Query: 578 ITYDIIQIALYK 589
+T +I++ LY+
Sbjct: 342 MTTEILRSMLYR 353
>UNIPROTKB|Q74GL1 [details] [associations]
symbol:tex "S1 RNA-binding domain-containing
transcriptional accessory protein" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_951296.1
ProteinModelPortal:Q74GL1 SMR:Q74GL1 GeneID:2687602
KEGG:gsu:GSU0235 PATRIC:22023214 ProtClustDB:CLSK2306712
BioCyc:GSUL243231:GH27-222-MONOMER Uniprot:Q74GL1
Length = 761
Score = 122 (48.0 bits), Expect = 0.00092, P = 0.00091
Identities = 45/159 (28%), Positives = 78/159 (49%)
Query: 597 ILEKMKTEVPKCKNELSKFAPRLITIKIDPSK-IRDVIGKGGSTIRTLTEETGTQIDIND 655
++E M T++ ++L+ A + +ID + + D +G T+R + EE +
Sbjct: 574 VVEAMATDLGVSLSQLA--ADPALPARIDLKRYVTDAVGL--PTLRDIMEE------LKK 623
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
G F + + ++ I L E G V G+V + FGA + + +DGL+H+
Sbjct: 624 PGRDPREEFRTAAFRDDVTEIGDLKE----GMVLQGVVTNVTAFGAFVDVGVHQDGLVHV 679
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGID-DRGRIKLSM 753
S +S K V + ++ Q V+VKVL +D R RI LS+
Sbjct: 680 SHLSVKFVKDPAEAVRVGQVVQVKVLSVDVQRKRISLSI 718
>TIGR_CMR|GSU_0235 [details] [associations]
symbol:GSU_0235 "S1 RNA binding domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:NP_951296.1 ProteinModelPortal:Q74GL1 SMR:Q74GL1
GeneID:2687602 KEGG:gsu:GSU0235 PATRIC:22023214
ProtClustDB:CLSK2306712 BioCyc:GSUL243231:GH27-222-MONOMER
Uniprot:Q74GL1
Length = 761
Score = 122 (48.0 bits), Expect = 0.00092, P = 0.00091
Identities = 45/159 (28%), Positives = 78/159 (49%)
Query: 597 ILEKMKTEVPKCKNELSKFAPRLITIKIDPSK-IRDVIGKGGSTIRTLTEETGTQIDIND 655
++E M T++ ++L+ A + +ID + + D +G T+R + EE +
Sbjct: 574 VVEAMATDLGVSLSQLA--ADPALPARIDLKRYVTDAVGL--PTLRDIMEE------LKK 623
Query: 656 EGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHI 715
G F + + ++ I L E G V G+V + FGA + + +DGL+H+
Sbjct: 624 PGRDPREEFRTAAFRDDVTEIGDLKE----GMVLQGVVTNVTAFGAFVDVGVHQDGLVHV 679
Query: 716 SQISSKRVNIITDFLKENQKVRVKVLGID-DRGRIKLSM 753
S +S K V + ++ Q V+VKVL +D R RI LS+
Sbjct: 680 SHLSVKFVKDPAEAVRVGQVVQVKVLSVDVQRKRISLSI 718
>TIGR_CMR|GSU_1795 [details] [associations]
symbol:GSU_1795 "ribonuclease PH" species:243231
"Geobacter sulfurreducens PCA" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033
GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:NP_952845.1 ProteinModelPortal:Q74C79
SMR:Q74C79 GeneID:2686347 KEGG:gsu:GSU1795 PATRIC:22026445
BioCyc:GSUL243231:GH27-1829-MONOMER Uniprot:Q74C79
Length = 238
Score = 114 (45.2 bits), Expect = 0.00092, P = 0.00092
Identities = 57/206 (27%), Positives = 91/206 (44%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFT 437
+R D R +R I I L GS L GDT+ L A++ +E L G+
Sbjct: 1 MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASV----EESVPPFLRGKGG 56
Query: 438 DSFMLHYNMPPFAT-------GDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIR 490
Y+M P AT G++G + EI RL R+L V S+
Sbjct: 57 GWVTAEYSMLPRATHTRSPREAAKGKLG-GRTHEIQ--RLIGRSLRAVTDLTLLGERSVL 113
Query: 491 LVSEITESNGSSSMASVCGGCLALLDA-------G----VPISEHVAGIAMGLIKDGEKV 539
+ ++ +++G + AS+ G +AL+DA G +P+ E VA +++G++ GE
Sbjct: 114 IDCDVLQADGGTRTASITGAYVALVDAFQWLVSQGTIATLPVREAVAAVSVGIV-GGE-- 170
Query: 540 VILSDILGDEDRCGDMDFKVAGTVNG 565
+L D+ ED D+D T +G
Sbjct: 171 -VLLDLNYIEDSRADVDMNFVMTSSG 195
>UNIPROTKB|Q88AQ9 [details] [associations]
symbol:PSPTO_0327 "S1 RNA binding domain protein"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
eggNOG:COG2183 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_790177.1
ProteinModelPortal:Q88AQ9 SMR:Q88AQ9 GeneID:1181936
KEGG:pst:PSPTO_0327 PATRIC:19991830 ProtClustDB:CLSK2299216
BioCyc:PSYR223283:GJIX-323-MONOMER Uniprot:Q88AQ9
Length = 773
Score = 122 (48.0 bits), Expect = 0.00093, P = 0.00093
Identities = 41/132 (31%), Positives = 65/132 (49%)
Query: 623 KIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTES 682
++DP K D G T+ + +E + G F + QE +E L +
Sbjct: 597 RLDPKKFTDETF-GLPTVTDILQE------LEKPGRDPRPEFKTAEFQEG---VEDLKD- 645
Query: 683 VQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLG 742
+Q G + G+V + +FGA + I +DGL+HIS +S K + + +K V+VKV+
Sbjct: 646 LQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVME 705
Query: 743 ID-DRGRIKLSM 753
ID R R+ LSM
Sbjct: 706 IDIPRKRVGLSM 717
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.139 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 755 755 0.00090 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 104
No. of states in DFA: 599 (64 KB)
Total size of DFA: 304 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.84u 0.13s 67.97t Elapsed: 00:00:06
Total cpu time: 67.86u 0.13s 67.99t Elapsed: 00:00:06
Start: Thu Aug 15 17:01:02 2013 End: Thu Aug 15 17:01:08 2013
WARNINGS ISSUED: 1