RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3754
(755 letters)
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 176
Score = 137 bits (345), Expect = 6e-38
Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 3/170 (1%)
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
IL D++ + L RID RG ++ R + I ++ + GS+L GDTQ +V
Sbjct: 3 ILVDIKRDYVLS-KLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVK 61
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA--LLP 477
+ ++ ++ P F G + R + G A L
Sbjct: 62 MQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSK 121
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAG 527
++ + + + + + +G+ AS AL++ VP G
Sbjct: 122 LVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLG 171
Score = 43.9 bits (103), Expect = 1e-05
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIP 137
K+ I I +A S LV + DT ++ V P Y P I A
Sbjct: 32 KVEIIPNVI-EKAEGSALVKLGDTQVVVGV--KMQPGEPYPDTPDRGVIIVNAELVPLAS 88
Query: 138 GSFFKREGKPSERETIISRLIDR--------PIRPLFPEGYLNEIQIVVYVLSVNPQIDP 189
+F G P E ++R++DR + L E + V + +++ +
Sbjct: 89 PTF--EPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNL 146
Query: 190 DIASIIGVSTALSISELP 207
AS + AL +++P
Sbjct: 147 LDASALAAIAALMNTKVP 164
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 191
Score = 137 bits (345), Expect = 8e-38
Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 4/175 (2%)
Query: 360 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 419
I+ ++ + I + +KG+R D R + D RP+SI + GS+L G T L
Sbjct: 10 IIPIIKKESIV-SLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTK 68
Query: 420 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRAL--LP 477
L + + + +L F G + R + +AL
Sbjct: 69 LEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTK 128
Query: 478 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVP-ISEHVAGIAMG 531
++ K +++ L + + G+ A AL + V + +H GI++
Sbjct: 129 LVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVN 183
Score = 32.1 bits (72), Expect = 0.17
Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 9/138 (6%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATVV------SCKDPTSTYNFFPLTVDYIEKAY 131
+SI + A++A S LV + T++LA P + + +
Sbjct: 39 PLSITLD-YAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYET 97
Query: 132 AAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDI 191
P + +R S+ +D + P + + + VYVL +
Sbjct: 98 FEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLD-- 155
Query: 192 ASIIGVSTALSISELPFL 209
A + AL +++ +
Sbjct: 156 ACTLASVAALYNTKVYKV 173
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
{Streptomyces antibioticus [TaxId: 1890]}
Length = 137
Score = 134 bits (339), Expect = 1e-37
Identities = 71/135 (52%), Positives = 94/135 (69%)
Query: 387 DIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNM 446
DIR ++ +PR HGS+LF RG+TQ L V TL R EQ++D L +M +YN
Sbjct: 2 DIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNF 61
Query: 447 PPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMAS 506
PP++ G+ GR+G PKRREIGHG LA+RA++PVLP +F Y+IR VSE SNGS+SM S
Sbjct: 62 PPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGS 121
Query: 507 VCGGCLALLDAGVPI 521
VC ++LL+AGVP+
Sbjct: 122 VCASTMSLLNAGVPL 136
Score = 74.5 bits (182), Expect = 2e-16
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 3/133 (2%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIP 137
++ E+ + S L +T IL V + P
Sbjct: 5 TLAAEVE-AIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPP 63
Query: 138 GS--FFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASII 195
S R G P RE L +R I P+ P I ++ + S+
Sbjct: 64 YSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVC 123
Query: 196 GVSTALSISELPF 208
+ +L + +P
Sbjct: 124 ASTMSLLNAGVPL 136
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 129 bits (326), Expect = 1e-35
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 4/150 (2%)
Query: 370 RKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKI 429
K ILD G R D R +++R I I G+L GS++F G+T+A+ E
Sbjct: 3 PKLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGP---KEMHP 59
Query: 430 DALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSI 489
L + Y+M PF+T + P RREI ++ + AL + +I
Sbjct: 60 RHLSLPDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAI 118
Query: 490 RLVSEITESNGSSSMASVCGGCLALLDAGV 519
+ +EI +++ S + S+ LAL DAG+
Sbjct: 119 DVFTEILQADAGSRLVSLMAASLALADAGI 148
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 128 bits (323), Expect = 2e-35
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 2/147 (1%)
Query: 373 ILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDAL 432
+ D+G R+D R ++R I R G+ + GS+ +G+T+AL V + AL
Sbjct: 1 LSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARAL 60
Query: 433 MGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLV 492
Y+ F+TG+ R R+ G ++ + I +
Sbjct: 61 PDRAL--VNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIY 118
Query: 493 SEITESNGSSSMASVCGGCLALLDAGV 519
++ +++G + A V LA+LDAG+
Sbjct: 119 VQVLQADGGTYAACVNAATLAVLDAGI 145
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 144
Score = 126 bits (318), Expect = 1e-34
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 372 QILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDA 431
+++ GLR+D R +++RPI I +L R GS G + + E
Sbjct: 1 KLIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGP---REVHPRH 57
Query: 432 LMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRL 491
L YNM PF+ + R G P RR I +++K A V+ +I +
Sbjct: 58 LQDPSKAIIRYRYNMAPFSVEERKRPG-PDRRSIEISKVSKEAFEAVIMKELFPRSAIDI 116
Query: 492 VSEITESNGSSSMASVCGGCLALLDAGV 519
E+ +++ S A + +AL+DAGV
Sbjct: 117 FVEVLQADAGSRTACLNAASVALVDAGV 144
Score = 36.0 bits (82), Expect = 0.005
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 9/127 (7%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIP 137
I IE + ++A S + + ++A V P + Y P
Sbjct: 19 PIKIEAS-VLKRADGSCYLEMGKNKVIAAVFG---PREVHPRHLQDPSKAIIRYRYNMAP 74
Query: 138 GSFFKR-EGKPSERETIISRLIDRPIRPLFPEGYLNEIQ--IVVYVLSVNPQIDPDIASI 194
S +R P R IS++ + + I V VL + A +
Sbjct: 75 FSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRT--ACL 132
Query: 195 IGVSTAL 201
S AL
Sbjct: 133 NAASVAL 139
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 127 bits (319), Expect = 3e-34
Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 7/183 (3%)
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L + E + + + +++ R+D R D R I I G +G + G T+ L +
Sbjct: 6 LSNCERRFLLR-AIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSC 61
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA--LLPV 478
+ F + + P F G + V R + + +
Sbjct: 62 ELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESL 121
Query: 479 LPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEK 538
+ + IR+ + +G+ A+ +AL P V G + L E+
Sbjct: 122 CVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVS-VQGDEVTLYTPEER 180
Query: 539 VVI 541
+
Sbjct: 181 DPV 183
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 126 bits (318), Expect = 4e-34
Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 21/192 (10%)
Query: 361 LYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATL 420
L + E I + + LR+D RG D R + + T ++ T GS+ G T LV
Sbjct: 2 LSEAEKVYIV-HGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKA 60
Query: 421 GTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLP 480
+ + AT + R
Sbjct: 61 EMGTPKL-----EKPNEGYLEFFVDCSASATPEFEG-RGGDDLGTEIANTLYRIFNNKSS 114
Query: 481 --------NNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGL 532
+ + + + + + E G+ A AL + +P + +
Sbjct: 115 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR------VRVLE 168
Query: 533 IKDGEKVVILSD 544
++G K + LSD
Sbjct: 169 DEEGSKDIELSD 180
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
{Streptomyces antibioticus [TaxId: 1890]}
Length = 149
Score = 123 bits (310), Expect = 2e-33
Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 64 LFNKIIKSFKYGSYKISIEIGEIARQATSSVLVSI-EDTVILATVVSCKDPTSTYNFFPL 122
+I + +G+ I E G +ARQA S + + +DT++L+ + K+P +FFPL
Sbjct: 5 YAEAVIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPL 64
Query: 123 TVDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLS 182
TVD E+ YAAG+IPGSFF+REG+PSE + RLIDRP+RP F +G NEIQ+V +++
Sbjct: 65 TVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMA 124
Query: 183 VNPQIDPDIASIIGVSTALSISELP 207
+NP D+ +I S + ++ LP
Sbjct: 125 LNPDHLYDVVAINAASASTQLAGLP 149
Score = 105 bits (263), Expect = 3e-27
Identities = 29/143 (20%), Positives = 44/143 (30%), Gaps = 3/143 (2%)
Query: 379 RIDNRGVNDIRPISIRTGILPR-THGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFT 437
IDN R I TG L R GS++ D ++ AT S++ +
Sbjct: 9 VIDNGAFGT-RTIRFETGRLARQAAGSAVAYLDDDTMVLSAT-TASKNPKDQLDFFPLTV 66
Query: 438 DSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITE 497
D Y R G P I RL R L P + +
Sbjct: 67 DVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALN 126
Query: 498 SNGSSSMASVCGGCLALLDAGVP 520
+ + ++ + AG+P
Sbjct: 127 PDHLYDVVAINAASASTQLAGLP 149
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domains 2 and 5 {Streptomyces
antibioticus [TaxId: 1890]}
Length = 96
Score = 119 bits (299), Expect = 1e-32
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 525 VAGIAMGLIKDG----EKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITY 580
VAGIAMGLI V L+DILG ED GDMDFKVAGT +TALQ+D K+ GI
Sbjct: 3 VAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPA 62
Query: 581 DIIQIALYKAKKGLSYILEKMKTEVPKCKNELSK 614
++ AL +A+ +IL+ M + +E+S
Sbjct: 63 SVLAAALKQARDARLHILDVMMEAIDT-PDEMSP 95
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 151
Score = 121 bits (303), Expect = 1e-32
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Query: 379 RIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438
R R + +RPI I GS L GDT+ + + + L G+
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSA----ESGVPRFLKGQGQG 58
Query: 439 SFMLHYNMPPFATGDIGRIGVPKRREIG----HGRLAKRALLPVLPNNNKFNYSIRLVSE 494
Y M P +TG+ + + ++ G RL R+L L + ++ + +
Sbjct: 59 WLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCD 118
Query: 495 ITESNGSSSMASVCGGCLALLDAGVPISE 523
+ +++G + AS+ G +AL+DA + +
Sbjct: 119 VIQADGGTRTASITGATVALIDALAVLKK 147
Score = 45.6 bits (107), Expect = 3e-06
Identities = 33/135 (24%), Positives = 44/135 (32%), Gaps = 5/135 (3%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATVV---SCKDPTSTYNFFPLTVDYIEKAYAAG 134
I I + A SVLV DT ++ TV LT +Y + G
Sbjct: 14 PIRITRH-YTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTG 72
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
R GK R I RLI R +R L E + + + ASI
Sbjct: 73 ERNQREASR-GKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASI 131
Query: 195 IGVSTALSISELPFL 209
G + AL +
Sbjct: 132 TGATVALIDALAVLK 146
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 119 bits (299), Expect = 5e-32
Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 9/146 (6%)
Query: 382 NRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT--------LGTSRDEQKIDALM 433
R +RP+ R G+L + GS+ G T+ L +
Sbjct: 2 TRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAP 61
Query: 434 GEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVS 493
+ + PFA E + AL P + + + +
Sbjct: 62 AALRGRLLCDFRRAPFAGRRRRAPP-GGCEERELALALQEALEPAVRLGRYPRAQLEVSA 120
Query: 494 EITESNGSSSMASVCGGCLALLDAGV 519
+ E GS+ A++ LAL DAGV
Sbjct: 121 LLLEDGGSALAAALTAAALALADAGV 146
Score = 83.8 bits (206), Expect = 1e-19
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 10/136 (7%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATVVSCKDP-TSTYNFFPLTVDYIEKAYAAGRI 136
+ G + QA S + T +L V + P A GR+
Sbjct: 10 PVYARAG-LLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRL 68
Query: 137 --------PGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQID 188
+R E ++ + + P G Q+ V L +
Sbjct: 69 LCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGS 128
Query: 189 PDIASIIGVSTALSIS 204
A++ + AL+ +
Sbjct: 129 ALAAALTAAALALADA 144
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus
subtilis [TaxId: 1423]}
Length = 151
Score = 119 bits (298), Expect = 7e-32
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 6/157 (3%)
Query: 378 LRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFT 437
+R D R +++RPI+ + GS L T G+T+ + A++ G T
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWIT 60
Query: 438 DSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITE 497
+ + T G R + RL RAL V+ +I + ++ +
Sbjct: 61 AEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 498 SNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIK 534
++G + AS+ G LA+ A + I G IK
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKL------IKAGTIK 151
Score = 54.5 bits (130), Expect = 3e-09
Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 3/129 (2%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI--EKAYAAGR 135
I+ ++ SVL++ +T ++ A
Sbjct: 13 PITFDLD-FISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATN 71
Query: 136 IPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASII 195
+GK S R I RLI R +R + L E I + + ASI
Sbjct: 72 QQTIQESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASIT 131
Query: 196 GVSTALSIS 204
G A++I+
Sbjct: 132 GAFLAMAIA 140
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 116 bits (290), Expect = 2e-30
Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 5/170 (2%)
Query: 371 KQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKID 430
++ L + R D R + + R ++ G + GS+L G+T + +
Sbjct: 9 RRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAP 68
Query: 431 ALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKR--ALLPVLPNNNKFNYS 488
+ + F +G G + I + + + K +
Sbjct: 69 DKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWV 128
Query: 489 IRLVSEITESNGSSSMASVCGGCLALLDAGVP---ISEHVAGIAMGLIKD 535
+ + +G+ A AL + +P I+E A + L K
Sbjct: 129 LYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKK 178
Score = 72.2 bits (176), Expect = 4e-15
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 12/157 (7%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATVV------SCKDPTSTYNFFPLTVDYIEKAY 131
++ IG I A S LV + +T ++ V S P Y + + + +
Sbjct: 28 TTTVNIGSI-STADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSR 86
Query: 132 AAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDI 191
PG + + S++I + + P + + + L + +
Sbjct: 87 FRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICL--DYDGNILD 144
Query: 192 ASIIGVSTALSISELP---FLGPLGVAKVGYIDGKYI 225
A + AL +LP +A+V Y+
Sbjct: 145 ACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYL 181
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 109 bits (272), Expect = 9e-29
Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 13/133 (9%)
Query: 387 DIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTDSFMLHYNM 446
+R + +L R GS+ F +GDT L +N
Sbjct: 3 SLRHFACEQNLLSRPDGSASFLQGDTSVLAGVY-------------GPAEVKVSKEIFNK 49
Query: 447 PPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNYSIRLVSEITESNGSSSMAS 506
+IG+P E RL + V+ SI +V ++ GS
Sbjct: 50 ATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACC 109
Query: 507 VCGGCLALLDAGV 519
+ C+AL+DAGV
Sbjct: 110 LNAACMALVDAGV 122
Score = 81.7 bits (201), Expect = 3e-19
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 12/127 (9%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYIEKAYAAGRIP 137
+ E ++R S DT +LA V + P V ++ + +
Sbjct: 6 HFACEQNLLSR-PDGSASFLQGDTSVLAGV-----------YGPAEVKVSKEIFNKATLE 53
Query: 138 GSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGV 197
+ G P E RLI + I V + V+ +
Sbjct: 54 VILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAA 113
Query: 198 STALSIS 204
AL +
Sbjct: 114 CMALVDA 120
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex
aeolicus [TaxId: 63363]}
Length = 149
Score = 109 bits (272), Expect = 2e-28
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Query: 379 RIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQKIDALMGEFTD 438
R D R + +RP+SI+ L GS L + G T+ + A++ E + L G+
Sbjct: 1 RSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASV----IENVPNWLKGKGQG 56
Query: 439 SFMLHYNMPPFATGDIGRIGVPKRREI----GHGRLAKRALLPVLPNNNKFNYSIRLVSE 494
Y+M P AT + R R+ RA+ + +I + +
Sbjct: 57 WITAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCD 116
Query: 495 ITESNGSSSMASVCGGCLALLDAGVPISEHVAGI 528
+ +++G ++ A++ G +A+ DA + + H GI
Sbjct: 117 VIQADGGTATAAITGAFVAVADAIIKL--HKEGI 148
Score = 49.5 bits (117), Expect = 1e-07
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 5/135 (3%)
Query: 78 KISIEIGEIARQATSSVLVSIEDTVILATV---VSCKDPTSTYNFFPLTVDYIEKAYAAG 134
+SI+ S L+S T ++ T + + +T +Y A
Sbjct: 12 PVSIQRD-FLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEY-SMLPRAT 69
Query: 135 RIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASI 194
+ +G+ R I R+I R +R + E I V + A+I
Sbjct: 70 QQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTATAAI 129
Query: 195 IGVSTALSISELPFL 209
G A++ + +
Sbjct: 130 TGAFVAVADAIIKLH 144
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domains 2 and 5 {Streptomyces
antibioticus [TaxId: 1890]}
Length = 111
Score = 96.9 bits (241), Expect = 1e-24
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 208 FLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGT-----------------EKAII 250
F GP+G +V I G+++ PT +L+ + D++VAG EK I
Sbjct: 1 FSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQ 60
Query: 251 TVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKD 302
V+ ++ E+++ + +K+ A +L + + P+ D
Sbjct: 61 LVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGEF-PVFLD 111
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 75.5 bits (186), Expect = 2e-17
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIE 677
R ++I P+K+ VIG+ S ++TL E+T +I + G I + N A I+
Sbjct: 1 RGKIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNEDLEAIAVMAIK 60
Query: 678 KLTESVQIGKVYTGIV 693
+ E + I+
Sbjct: 61 IIDEEAYTSGLTKRII 76
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide
phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Length = 76
Score = 74.0 bits (182), Expect = 5e-17
Identities = 39/71 (54%), Positives = 56/71 (78%)
Query: 683 VQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLG 742
+++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV +TD+L+ Q+V VKVL
Sbjct: 3 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 62
Query: 743 IDDRGRIKLSM 753
+D +GRI+LS+
Sbjct: 63 VDRQGRIRLSI 73
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
[TaxId: 274]}
Length = 84
Score = 73.6 bits (181), Expect = 8e-17
Identities = 32/52 (61%), Positives = 38/52 (73%)
Query: 8 KASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
K +I + +R DTGS EVQVALLT RIN L+ H K+H KDHHS RGL+MM
Sbjct: 5 KQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMM 56
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
[TaxId: 562]}
Length = 88
Score = 73.6 bits (181), Expect = 9e-17
Identities = 32/58 (55%), Positives = 39/58 (67%)
Query: 2 TIKNNIKASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
++ A I+ + R NDTGS EVQVALLT++IN L HF H KDHHSRRGL+ M
Sbjct: 1 SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRM 58
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 85
Score = 72.8 bits (179), Expect = 2e-16
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 8 KASIILDNSRTKNDTGSPEVQVALLTSRINDLNIHFKLHIKDHHSRRGLIMM 59
K II +NDTGSPEVQ+A+LT +IN+LN H ++H KDHHSRRGL+ M
Sbjct: 6 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKM 57
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 70.4 bits (173), Expect = 5e-16
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 616 APRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNS 666
APR+IT+KI KI +VIG I + E+TG +I I D+G I I + +
Sbjct: 1 APRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDDGTIYIGAADG 51
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 70.5 bits (173), Expect = 7e-16
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKL 679
I I I P K+ VIGK S TLT ++G I + + G I + S + I K+
Sbjct: 3 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKI 62
Query: 680 TESVQI 685
I
Sbjct: 63 ENESHI 68
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus
subtilis [TaxId: 1423]}
Length = 86
Score = 70.8 bits (173), Expect = 9e-16
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 520 PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGI 578
PI++ +A I++G+ K+ ++ D+ +ED ++D V T +G LQ +
Sbjct: 3 PITDFLAAISVGIDKEQGILL---DLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATF 59
Query: 579 TYDIIQIALYKAKKGLSYILEKMK 602
+ + + L A+KG+ +++K K
Sbjct: 60 SREDLNGLLGLAEKGIQELIDKQK 83
Score = 40.3 bits (94), Expect = 4e-05
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 207 PFLGPLGVAKVGYIDGKYILNPTT-EQLKKSHLDLLVAGTEK---AIITVESESKQLPED 262
P L VG + IL E+ + +D+ V T + E +
Sbjct: 3 PITDFLAAISVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSRE 62
Query: 263 IILNAIIFGHEKMKIAINAINE 284
+ + + ++ I+ E
Sbjct: 63 DLNGLLGLAEKGIQELIDKQKE 84
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 94
Score = 69.9 bits (171), Expect = 2e-15
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 671 EAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFL 730
E + +E L + ++ G V G+V + +FGA + I +DGL+HIS +S K V + +
Sbjct: 5 EFQEGVESL-KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVV 63
Query: 731 KENQKVRVKVLGID-DRGRIKLSM 753
K V+VKV+ +D R R+ LSM
Sbjct: 64 KAGDIVKVKVMEVDIPRNRVGLSM 87
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing
protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 68.8 bits (168), Expect = 6e-15
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS----------SKRVNIITDFLKEN 733
++G + G + + + S D +L +S ++ ++ + FL+E
Sbjct: 7 EVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEG 66
Query: 734 QKVRVKVLGIDDRGRIKLSM 753
+ +V + G + L
Sbjct: 67 DLISAEVQAVFSDGAVSLHT 86
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId:
56636]}
Length = 88
Score = 67.6 bits (165), Expect = 1e-14
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI----ITDFLKENQKVRVK 739
Q G V G++ + + I S +L + + N + LK ++ K
Sbjct: 6 QAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAK 65
Query: 740 VLGIDDRGRIKLSM 753
V+ D L++
Sbjct: 66 VVAFDKTRSPLLTV 79
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 88
Score = 66.2 bits (161), Expect = 4e-14
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 518 GVPISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIF 576
G P+ + VA +++G+ + V + D+ ED + D V T G +Q +
Sbjct: 2 GNPLKQMVAAVSVGIYQG----VPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGA 57
Query: 577 GITYDIIQIALYKAKKGLSYILEKMK 602
+ L A++G+ + E +
Sbjct: 58 PFRPAELNAMLELAQQGMQELFELQR 83
Score = 49.6 bits (118), Expect = 3e-08
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
Query: 206 LPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITV---ESESKQLPED 262
P + VG G +L+ + + DL V T+ +E
Sbjct: 3 NPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPA 62
Query: 263 IILNAIIFGHEKMKIAINAINELV 286
+ + + M+ +
Sbjct: 63 ELNAMLELAQQGMQELFELQRAAL 86
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of
polyribonucleotide phosphorylase, PNPase {Streptomyces
antibioticus [TaxId: 1890]}
Length = 62
Score = 64.7 bits (158), Expect = 6e-14
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 691 GIVLRLFDFGAIIRILSGKDGLLHISQIS----SKRVNIITDFLKENQKVRVKVLGIDDR 746
G V++ FGA + +L GKDGLLHISQI KRV + D L QKV+V++ ID R
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSR 60
Query: 747 GR 748
G+
Sbjct: 61 GK 62
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 64.0 bits (156), Expect = 2e-13
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 615 FAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIN-DEGIITIASFNSVSGQEAK 673
PR I +K+ P ++ VIG G + TGT I ++ + ++ +
Sbjct: 1 MKPR-IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNL 59
Query: 674 RRIEKLTESVQIGKVYTGIVLRLFD 698
+ ++ +++ +G RL +
Sbjct: 60 MKAAEVVKAISLGFPP-EKAFRLLE 83
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex
aeolicus [TaxId: 63363]}
Length = 105
Score = 64.2 bits (156), Expect = 3e-13
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 520 PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGI 578
PI + VA +++G++ D IL D+ +ED +D V GT +G ++ + + +
Sbjct: 4 PIKDFVAAVSVGIVND----RILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSF 59
Query: 579 TYDIIQIALYKAKKGLSYILEKMK 602
T D + L A+KG++ ++E K
Sbjct: 60 TKDELIKMLDLAQKGINELIELQK 83
Score = 54.6 bits (131), Expect = 8e-10
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 205 ELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKA---IITVESESKQLPE 261
E P + VG ++ + +L+ E+ + +D+ V GT + E +
Sbjct: 2 ETPIKDFVAAVSVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTK 61
Query: 262 DIILNAIIFGHEKMKIAINAINE-LVQNVGQKK 293
D ++ + + + I + V G+ +
Sbjct: 62 DELIKMLDLAQKGINELIELQKKLYVIQDGKWE 94
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 63.2 bits (154), Expect = 4e-13
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKL 679
+ I+P+++ VIGK GS I+ L E QI + G+I + + A+ I +
Sbjct: 3 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNG-DRRKVSIAEEAIYLI 61
Query: 680 TESVQIGKVYTGIV 693
+ + +
Sbjct: 62 EQEAHTEGLTDRVA 75
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 62.5 bits (152), Expect = 8e-13
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 609 KNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG---IITIASFN 665
K L P I +++ R VIG+ GS IR + +E I + I +
Sbjct: 1 KEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL 60
Query: 666 SVSGQEAKRRIEKLTESVQ 684
+ + AK + + + +Q
Sbjct: 61 AANLDRAKAGLLERVKELQ 79
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome
related protein 1, FXR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 61.1 bits (148), Expect = 2e-12
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 621 TIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE--GIITIASFNSVSGQEAKRRIEK 678
+ + IG GS I+ + G DE G I ++ + ++A+ +E
Sbjct: 11 EFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEF 70
Query: 679 LTESVQI 685
+ + +Q+
Sbjct: 71 VEDFIQV 77
>d1e3ha1 a.4.9.1 (A:263-345) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 3
{Streptomyces antibioticus [TaxId: 1890]}
Length = 83
Score = 60.6 bits (147), Expect = 3e-12
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 305 LISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDL 364
++ + ++ A I KQ R+ + L+ +I+ L
Sbjct: 5 VLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFE--GREKEISAAYRAL 62
Query: 365 ESKIIRKQILDKGLRIDNRGV 385
++R++++ + RID RGV
Sbjct: 63 TKSLVRERVIAEKKRIDGRGV 83
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 60.9 bits (148), Expect = 5e-12
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 632 VIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSVSGQEAKRRIEKLTESVQIGKVYTG 691
+IG+GG RT+ E T T I++ + + I + AK+ IE L E VY
Sbjct: 27 IIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERA--MAAKQAIEMLAEGRMHSTVYRH 84
Query: 692 I 692
+
Sbjct: 85 L 85
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 83
Score = 59.2 bits (143), Expect = 8e-12
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSK-RVNIITDFLKENQKVRVKVLG 742
+G V GI+ + G + I S L +S+ + L + KVL
Sbjct: 4 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 63
Query: 743 IDDRGRIKLSM 753
ID + ++ L+M
Sbjct: 64 IDPKMKVTLTM 74
>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 99
Score = 59.7 bits (144), Expect = 9e-12
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 520 PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAG-----TVNGITALQMDIK 574
P+ + +A+G ++ D + +ED G+ D A + I LQMD +
Sbjct: 1 PMKGMITSVAVGKADG----QLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGR 56
Query: 575 IFGITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELSKFAPRLIT 621
+ T D ++ A+ AKKG I E + + + E+ + IT
Sbjct: 57 M---TRDEVKQAIELAKKGALQIYEMQREAILRRYIEVGEEMDE-IT 99
Score = 55.1 bits (132), Expect = 4e-10
Identities = 16/92 (17%), Positives = 31/92 (33%)
Query: 207 PFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILN 266
P G + VG DG+ +L+P E+ D+ A + Q+ + +
Sbjct: 1 PMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRD 60
Query: 267 AIIFGHEKMKIAINAINELVQNVGQKKVNWDP 298
+ E K I E+ + ++
Sbjct: 61 EVKQAIELAKKGALQIYEMQREAILRRYIEVG 92
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 87
Score = 59.2 bits (143), Expect = 1e-11
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT---DFLKENQKVRVKV 740
+I + G+V + +G ++ I + L S + + +N+ +L V ++
Sbjct: 6 KINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARI 65
Query: 741 LGIDDRGRIKLSM 753
D LS+
Sbjct: 66 ENFDRSIDPVLSV 78
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.1 bits (140), Expect = 3e-11
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 520 PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVA--GTVNGITALQMDIKIFG 577
P+ + V + G + L+D+ E+ G +A I L+MD ++
Sbjct: 1 PMRDFVCACSAGFVDG----TALADLSHVEEAAGGPQLALALLPASGQIALLEMDARL-- 54
Query: 578 ITYDIIQIALYKAKKGLSYILEKMKTEVPKCKNELS 613
D ++ L A + + + V + E S
Sbjct: 55 -HEDHLERVLEAAAQAARDVHTLLDRVVRQHVREAS 89
Score = 42.3 bits (99), Expect = 1e-05
Identities = 9/84 (10%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 207 PFLGPLGVAKVGYIDGKYILNPTTEQLK--KSHLDLLVAGTEKAIITVESESKQLPEDII 264
P + G++DG + + + + L L + I +E +++ + +
Sbjct: 1 PMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHED-HL 59
Query: 265 LNAIIFGHEKMKIAINAINELVQN 288
+ + + ++ +V+
Sbjct: 60 ERVLEAAAQAARDVHTLLDRVVRQ 83
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 86
Score = 57.6 bits (139), Expect = 4e-11
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 520 PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGT--VNGITALQMDIKIFG 577
P+ + +AG+A+G VI+ D+ E G+ D +A +N +T Q++
Sbjct: 1 PMRDLIAGVAVGKADG----VIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGS--- 53
Query: 578 ITYDIIQIALYKAKKGLSYILEKMK 602
+T D + A A KG++ I +
Sbjct: 54 MTPDEFRQAFDLAVKGINIIYNLER 78
Score = 43.8 bits (103), Expect = 3e-06
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 207 PFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAI-ITVESESKQLPEDIIL 265
P + VG DG IL+ + D+ +A +T+ + + D
Sbjct: 1 PMRDLIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFR 60
Query: 266 NAIIFGHEKMKIAINAINELVQNVGQKK 293
A + IN I L + + K
Sbjct: 61 QAFDLAVK----GINIIYNLEREALKSK 84
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 57.2 bits (138), Expect = 8e-11
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
Query: 289 VGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQI--KNKQIRDLTFKNISKDIYSSLID 346
++ I+ K+ + +K RD I D L
Sbjct: 2 SSGSSGPQKIFTPSAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLK- 60
Query: 347 NENLTIDINDINCILYDLESKIIRKQILDKGLRIDNRGVNDIR 389
+ +D +I + ++ R IL++ R D R
Sbjct: 61 EKFPEVDQFEIIESFNIVAKEVFRSIILNEYKRCDGRDSGPSS 103
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 84
Score = 55.7 bits (134), Expect = 2e-10
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 207 PFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIIT--VESESKQLPEDII 264
P P+ V +D +++P ++ + + T I +S + I
Sbjct: 1 PLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDI 60
Query: 265 LNAIIFGHEKMKIAINAINELV 286
A + + + +
Sbjct: 61 DQAENTARSTAVKLLEELKKHL 82
Score = 38.0 bits (88), Expect = 3e-04
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 520 PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGI 578
P++ V I++ + D VV D DE+ D + T + I +Q K +
Sbjct: 1 PLNYPVVTISVAKV-DKYLVV---DPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGS-M 55
Query: 579 TYDIIQIALYKAKKGLSYILEKMKTEV 605
+ I A A+ +LE++K +
Sbjct: 56 SLQDIDQAENTARSTAVKLLEELKKHL 82
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 86
Score = 55.4 bits (133), Expect = 2e-10
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 684 QIGKVYTGIVLRLFDFGAIIRIL--SGKDGLLHISQISSKRVNIITDFLKENQKVRVKVL 741
++ V V + + GA + +L + +G++ +S++S +R+ I ++ + V V+
Sbjct: 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVI 71
Query: 742 GID-DRGRIKLSM 753
+D ++G I LS
Sbjct: 72 RVDKEKGYIDLSK 84
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 55.4 bits (133), Expect = 3e-10
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 520 PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGIT 579
P+ G+A L DG V+ D +++ A L K +
Sbjct: 1 PMRALFCGVACALDSDGTLVL---DPTSKQEKEARAVLTFALDSVERKLLMSSTK-GLYS 56
Query: 580 YDIIQIALYKAKKGLSYILEKMKTEVPK 607
+Q L A+ ++ + + +
Sbjct: 57 DTELQQCLAAAQAASQHVFRFYRESLQR 84
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 54.6 bits (131), Expect = 6e-10
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 609 KNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG--------IIT 660
L++ P + + + +IG+GG TIR++ + +G +I + E +I
Sbjct: 6 SGILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIK 65
Query: 661 IASFNSVSGQEAKRRIEKLTESVQ 684
I+ AK I + +
Sbjct: 66 ISG-TQKEVAAAKHLILEKVSEDE 88
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 84
Score = 52.7 bits (126), Expect = 2e-09
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 676 IEKLTESVQIGKVYTGIVLRLFDFGAIIRI--LSGKDGLLHISQISSKRVNIITDFLKEN 733
I ++ G++ V ++FD+G+ + + G L S++SSK V I D LKEN
Sbjct: 2 IYSRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKEN 61
Query: 734 QKVRVKVLGID-DRGRIKLSM 753
+KV VKV+ +D +G + +S+
Sbjct: 62 RKVIVKVIRVDRRKGTVDVSL 82
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 51.4 bits (123), Expect = 6e-09
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 604 EVPKCKNELSKFAPRLIT--IKIDPSKIRDVIGKGGSTIRTLTEE-TGTQIDINDEGIIT 660
++ + E+ A + R +IGK G + +T++ I+ +
Sbjct: 5 KLGQALTEVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKI 64
Query: 661 IASFNSVSGQEAKRRIEKLTESVQ 684
+ A+ +IE + + +
Sbjct: 65 TLEGPTEDVSVAQEQIEGMVKDLI 88
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 50.5 bits (121), Expect = 8e-09
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDI----NDEGIITIASFNSVSGQEAKRR 675
+ I ID R +IGK G+ I + ++ + I +I I + Q+AKR
Sbjct: 7 VEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEG-DPQGVQQAKRE 65
Query: 676 IEKLT 680
+ +L
Sbjct: 66 LLELA 70
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 50.5 bits (121), Expect = 1e-08
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG----IITIASFNSVSGQEAKRR 675
T+ I R VIGK G ++ L +T T+I I I I ++A+
Sbjct: 12 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG-TKEGIEKARHE 70
Query: 676 IEKLTE 681
+ ++
Sbjct: 71 VLLISA 76
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 50.2 bits (120), Expect = 1e-08
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG-------IITIASFNSVSGQEA 672
+++ +DP +IG+ G+ I + E I D+ ITI + + A
Sbjct: 12 LSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITG-YEKNTEAA 70
Query: 673 KRRIEKLTESVQ 684
+ I ++ ++
Sbjct: 71 RDAILRIVGELE 82
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3
(RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 49.8 bits (119), Expect = 3e-08
Identities = 6/71 (8%), Positives = 17/71 (23%), Gaps = 1/71 (1%)
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGI 743
G GIV + + + L ++ + + +
Sbjct: 5 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSF-EGATKRNRPNVQVGDLIYGQFVVA 63
Query: 744 DDRGRIKLSMI 754
+ ++ I
Sbjct: 64 NKDMEPEMVCI 74
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 106
Score = 49.6 bits (118), Expect = 4e-08
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 18/87 (20%)
Query: 684 QIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT-----------DFLKE 732
++ ++ G V+ + +FG+ +R L DGL+H+SQI V+ L+
Sbjct: 2 EMYELIEGEVVDVVEFGSFVR-LGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEI 60
Query: 733 NQKVRVKVLGID------DRGRIKLSM 753
VR +++ I +I L+M
Sbjct: 61 GDYVRARIVAISLKAERKRGSKIALTM 87
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 46.5 bits (110), Expect = 4e-07
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 525 VAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVA--GTVNGITALQMDIKIFGITYDI 582
V G + L G L D E+ VA +N + L + +
Sbjct: 5 VVGCGLSLA-PGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGG--LTES 61
Query: 583 IQIALYKAKKGLSYILEKMKTEVPKCKNELSKFA 616
A+ +G + ++ + + A
Sbjct: 62 WAEAVRLGLEGCQRLYPVLQQSLVRAARRRGAAA 95
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 46.0 bits (109), Expect = 4e-07
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG------IITIASFNSVSGQEAK 673
+ +D +IG G IR + +E I G + +V +EA
Sbjct: 12 EDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENV--EEAI 69
Query: 674 RRIEKLTE 681
I L E
Sbjct: 70 DHILNLEE 77
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 45.2 bits (107), Expect = 7e-07
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEE-TGTQIDINDEGI---ITIASFNSVSGQEAKRR 675
+ + I +IG G IR++ EE G I EG + S ++AK++
Sbjct: 12 VEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQ 71
Query: 676 IEKLTESVQ 684
+ L E Q
Sbjct: 72 LLHLAEEKQ 80
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 44.5 bits (105), Expect = 1e-06
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDI------NDEGIITIASFNSVSGQEAK 673
I + I + VIG+ G I+ + + G +I E I I Q A
Sbjct: 5 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITG-PPDRAQHAA 63
Query: 674 RRIEKLTESVQ 684
I L SVQ
Sbjct: 64 EIITDLLRSVQ 74
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 44.4 bits (105), Expect = 1e-06
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 621 TIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDI------NDEGIITI-ASFNSVSGQEAK 673
K+ + +IG+GG I + +E+G +I I E + + SV Q AK
Sbjct: 11 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESV--QSAK 68
Query: 674 RRIEKLTE 681
R ++++ E
Sbjct: 69 RLLDQIVE 76
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 40.5 bits (95), Expect = 3e-05
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG----IITI-ASFNSVSGQEAKR 674
I + + ++ +IGK G +++ + EE+G +I+I++ IIT+ N++ +A
Sbjct: 6 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAI--FKAFA 63
Query: 675 RIEKLTE 681
I E
Sbjct: 64 MIIDKLE 70
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 91
Score = 40.6 bits (95), Expect = 4e-05
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 685 IGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNI----------ITDFLKENQ 734
G+V G V+ G +++ + + D +
Sbjct: 3 KGEVVDGTVVSCSQHGFEVQV-GPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKS 61
Query: 735 KVRVKVLGID-DRGRIKL 751
++RVK+ G I
Sbjct: 62 RIRVKIEGCISQVSSIHA 79
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 39.5 bits (92), Expect = 8e-05
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV-------SGQEA 672
I I SK VIGKGG TI+ L E G ++ + +G + + Q+A
Sbjct: 10 QEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQA 69
Query: 673 KRRIEKLTE 681
K + +L
Sbjct: 70 KEMVLELIR 78
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 38.3 bits (89), Expect = 2e-04
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFN---SVSG-----QE 671
+ + + + + ++GKGG T+ E TG +I I+ +G + N +++G Q
Sbjct: 5 VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQA 64
Query: 672 AKRRIEKL 679
A+ I +
Sbjct: 65 AQYLISQR 72
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 79
Score = 37.5 bits (87), Expect = 4e-04
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 520 PISEHVAGIAMGLIKDGEKVVILSDILGDEDRCGDMDFKVAGTVNG-ITALQMDIKIFGI 578
P+ + + ++ + L D +E GD + + + A+Q + +
Sbjct: 1 PVRDLPVSVTSLIVGN----KYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGG-YLL 55
Query: 579 TYDIIQIALYKAKKGLSYILEKMK 602
+ L + + EK K
Sbjct: 56 DEKLFDELLDVSINCARKLREKFK 79
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 37.5 bits (87), Expect = 4e-04
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDIND------EGIITIASFNSVSGQEAK 673
+ I +IGKGG I+ + E+G I I++ + IITI + Q A+
Sbjct: 6 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITI-TGTQDQIQNAQ 64
Query: 674 RRIEKLTE 681
++ +
Sbjct: 65 YLLQNSVK 72
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 37.6 bits (87), Expect = 5e-04
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 685 IGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIITD------------FLKE 732
G+V +V ++ G + + I S+ +++
Sbjct: 4 KGEVVDAVVTQVNKVGLFTE-IGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQ 62
Query: 733 NQKVRVKVLGID-DRGRIKL 751
+ ++R+K++G D+ I
Sbjct: 63 DDEIRLKIVGTRVDKNDIFA 82
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 36.7 bits (85), Expect = 5e-04
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDI------NDEGIITIA-SFNSVSGQEA 672
+ I + I +IG+ G+ I + + +G QI I + +TI S S+ A
Sbjct: 4 HELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI--SLA 61
Query: 673 KRRIE 677
+ I
Sbjct: 62 QYLIN 66
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 36.0 bits (83), Expect = 0.001
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 620 ITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDI---------NDEGIITIA-SFNSVSG 669
+ K +IGKGG TI+++++++G +I++ + + TI + +
Sbjct: 3 FNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI-- 60
Query: 670 QEAKRRIEKL 679
A++ IE+
Sbjct: 61 DYARQLIEEK 70
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 87
Score = 35.9 bits (83), Expect = 0.002
Identities = 7/79 (8%), Positives = 24/79 (30%), Gaps = 14/79 (17%)
Query: 685 IGKVYTGIVLRLFDFGAIIRIL-SGKDGLLHISQISSKRVNIITDF------------LK 731
+ ++ + G +R++ +G + + + R ++ K
Sbjct: 3 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYK 62
Query: 732 ENQKVRVKVLGID-DRGRI 749
+ V + + + I
Sbjct: 63 VTDVIDVTIAEVRMETRSI 81
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal
domains {Thermotoga maritima [TaxId: 2336]}
Length = 68
Score = 29.7 bits (67), Expect = 0.16
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDE 656
+ + + P+++ IGKGG R + TG +IDI
Sbjct: 27 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 65
>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 29.8 bits (67), Expect = 0.22
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 689 YTGIVLRLFD----FGAIIRILSGKDGLLHISQISSKRVNIITDFLKENQKVRVKVLGID 744
G V + F+ +G I R + +D +H + I + + + V V
Sbjct: 9 VLGTV-KWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV-VEG 66
Query: 745 DRGR 748
++G
Sbjct: 67 EKGA 70
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A
{Clostridium thermocellum [TaxId: 1515]}
Length = 96
Score = 28.1 bits (62), Expect = 1.3
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 218 GYIDGKYILNPTTEQLKKSHLDLLVAGTEKAIITVES 254
GYI + + T L K+ + + GTE +T +
Sbjct: 6 GYILPDFSFDATVAPLVKAGFKVEIVGTELYAVTDAN 42
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal
domains {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 67
Score = 27.3 bits (61), Expect = 1.3
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 618 RLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEG 657
R + + ++ IGK G R TG +IDI +
Sbjct: 26 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 65
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 27.5 bits (61), Expect = 3.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 632 VIGKGGSTIRTLTEETGTQIDI 653
++G G T + L ETG +I +
Sbjct: 22 ILGPRGLTAKQLEAETGCKIMV 43
>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
{Campylobacter jejuni [TaxId: 197]}
Length = 229
Score = 27.4 bits (60), Expect = 5.3
Identities = 13/113 (11%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 227 NPTTEQLKKSHLD----LLVAGTEKAIITVESESKQLPEDIILNAIIFGHEK-------- 274
E ++ +D +L E+ + K + ++ ++ K
Sbjct: 65 LTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIATEVNAVSVFQDFCKEEEYPNEG 124
Query: 275 -MKIAINAINELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNK 326
+ +N I ++ N ++ ++ ++ + K Y KN
Sbjct: 125 DIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIKCGLNLEILYKTYIGKNV 177
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 26.3 bits (58), Expect = 7.8
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 632 VIGKGGSTIRTLTEETGTQIDI 653
+IG G+T++ + +E +I I
Sbjct: 23 LIGPRGNTLKNIEKECNAKIMI 44
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 27.4 bits (60), Expect = 9.1
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 5/153 (3%)
Query: 222 GKYILNPTTEQLKKSHLDLLVAGTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINA 281
G+YI + + +DL V +++++ ++ P ++L + + E + + A
Sbjct: 156 GRYIASIIPLPKRGPWIDLEV--EPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGA 213
Query: 282 INELVQNVGQKKVNWDPIVKDKTLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIY 341
ELVQ + + V ++ + + ++ + + L D+
Sbjct: 214 YGELVQGLMDESVF---AMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLG 270
Query: 342 SSLIDNENLTIDINDINCILYDLESKIIRKQIL 374
+ + I L E + ++
Sbjct: 271 EAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVF 303
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,775,747
Number of extensions: 138059
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 111
Length of query: 755
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 663
Effective length of database: 1,144,436
Effective search space: 758761068
Effective search space used: 758761068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)