BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3755
(692 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4G647|PNP_HERAR Polyribonucleotide nucleotidyltransferase OS=Herminiimonas
arsenicoxydans GN=pnp PE=3 SV=1
Length = 710
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/695 (65%), Positives = 572/695 (82%), Gaps = 5/695 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + K+F+YG + +++E GEIARQA+ +VLVSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHTVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGYLNE+QI+++V+SV
Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+IDPDIA++IG S ALS+S +PF GPLG A+VGYIDG+YILNPT QLK S +DL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL E+++L A++FGH++MK I+AI++LV++ G+ +V W P K++
Sbjct: 181 GTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVIDAIHDLVRDGGKPEVQWAPPAKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDL----TFKNISKDIYSSLIDNENLTIDINDINC 296
LI+++ + +E K+R AYQ K+KQ R F ++ ++ + D +++
Sbjct: 241 ALIARVAHFAEEKLRAAYQTKDKQARTAKLKDAFAEVNAEVAAEATSVGGAAPDTSEVGN 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QILD RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT+RDEQKIDALMGE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIKDG K
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+LSDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRIHILG 540
Query: 537 KMKTEVPK-CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 595
+M+ VP ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG+
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600
Query: 596 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 655
+TIAS ++ +GQEAKRRIE+LT SV++GKVY G VL+L DFGAI++++ GKDGLLHISQI
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660
Query: 656 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 695
>sp|A6SY02|PNP_JANMA Polyribonucleotide nucleotidyltransferase OS=Janthinobacterium sp.
(strain Marseille) GN=pnp PE=3 SV=1
Length = 711
Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/695 (65%), Positives = 573/695 (82%), Gaps = 5/695 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + K+F+YG +++++E GEIARQA+ +VLVSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVAKKDAKPGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGYLNE+QI+++V+SV
Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+IDPDIA++IG S ALS++ +PF GP+G A+VGYIDG+Y+LNPTT QL KS LDL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALSVAGIPFAGPVGAARVGYIDGQYVLNPTTSQLAKSDLDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE+KQL E+++L A++FGHE+MK I+AI++LV++ G+ +V W P K++
Sbjct: 181 GTEIAVLMVESEAKQLSEEVMLGAVVFGHEQMKAVIDAIHDLVRDGGKPEVQWSPAPKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 296
LIS++ + +E K+R AYQ K+KQ R K+ ++ + L D ++
Sbjct: 241 ALISRVAHFAEAKLRAAYQTKDKQARTTKLKDAFAEVNNELAAEAASIGAAAPDTAEVGN 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT+RDEQKIDALMGE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALVAAL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGSKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRVHILG 540
Query: 537 KMKTEVPK-CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 595
+M+ VP ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG+
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600
Query: 596 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 655
+TIAS ++ +GQEAKRRIE+LT SV++GK+Y G VL+L DFGAI++++ GKDGLLHISQI
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660
Query: 656 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+++RVN + D+L+E Q+VRVKVL DDRGR+KLSM
Sbjct: 661 ANERVNAVADYLQEGQQVRVKVLETDDRGRLKLSM 695
>sp|Q2SZN9|PNP_BURTA Polyribonucleotide nucleotidyltransferase OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=pnp PE=3 SV=1
Length = 713
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 544/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I+K F++G +K+ +E GEIARQA+ +VLV +EDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++ DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|Q63VN7|PNP_BURPS Polyribonucleotide nucleotidyltransferase OS=Burkholderia
pseudomallei (strain K96243) GN=pnp PE=3 SV=1
Length = 713
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 545/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I+K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|A3N7L3|PNP_BURP6 Polyribonucleotide nucleotidyltransferase OS=Burkholderia
pseudomallei (strain 668) GN=pnp PE=3 SV=1
Length = 713
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 545/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I+K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|Q3JUB3|PNP_BURP1 Polyribonucleotide nucleotidyltransferase OS=Burkholderia
pseudomallei (strain 1710b) GN=pnp PE=3 SV=1
Length = 713
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 545/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I+K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|A3NTA2|PNP_BURP0 Polyribonucleotide nucleotidyltransferase OS=Burkholderia
pseudomallei (strain 1106a) GN=pnp PE=3 SV=1
Length = 713
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 545/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I+K F++G +K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|A9AJP0|PNP_BURM1 Polyribonucleotide nucleotidyltransferase OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=pnp PE=3 SV=1
Length = 715
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/693 (60%), Positives = 546/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPE+++L A++FGHE+M+ AI+AI+ELV++ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 296
LI+++ I++ ++ AYQI++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTEIAQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTEAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|A1V2L2|PNP_BURMS Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain SAVP1) GN=pnp PE=3 SV=1
Length = 713
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 544/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I+K F++G K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQQKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARLTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|Q62IN1|PNP_BURMA Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain ATCC 23344) GN=pnp PE=3 SV=1
Length = 713
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 544/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I+K F++G K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQQKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARLTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|A2S463|PNP_BURM9 Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain NCTC 10229) GN=pnp PE=3 SV=1
Length = 713
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 544/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I+K F++G K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQQKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARLTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|A3MI97|PNP_BURM7 Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain NCTC 10247) GN=pnp PE=3 SV=1
Length = 713
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/693 (60%), Positives = 544/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I+K F++G K+ +E GEIARQA+ +V+V IEDTV+LATVV K +FFPLT
Sbjct: 3 LFNKIVKEFQWGQQKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V Y++ +Y+LNPT EQ+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P KD+
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
L +++ +++ ++ AYQI++KQ R K + S + + + D +
Sbjct: 243 ALNARVTELAQPELLAAYQIRDKQARLTKLKEVYAATSAKLEEEAVAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDLEAKIVRGQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KMK V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMKDAVAGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSEGMAEAKKRIENITAEIEVGHVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|A1TLL2|PNP_ACIAC Polyribonucleotide nucleotidyltransferase OS=Acidovorax citrulli
(strain AAC00-1) GN=pnp PE=3 SV=1
Length = 758
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/690 (60%), Positives = 539/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + K+F++G + +E GEIARQAT +VLV+I+DTV+LATVV+ K +FFPLT
Sbjct: 3 MFNKVTKTFQWGDKTVVMETGEIARQATGAVLVNIDDTVVLATVVASKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTVSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++D DIA++I VS ALS+S +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYINGEYVLNPGQTARKNSQMDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL EDI+L A++FGHE+ +IAINAI+ELV++ G+ +W P KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEDIMLGAVVFGHEQGRIAINAIHELVRDAGKPVWDWQPAAKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
I+K+ ++E K+R AYQI++KQ R + S + SL E D + +L+D
Sbjct: 243 PFIAKVTQLAEEKLRAAYQIRSKQARTQALREASASVLESL-KAEGADFDAVKVEALLFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q+IDAL GEF D FM HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEFEDRFMFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+ IR LTEETGTQI+I+++G ITIAS
Sbjct: 542 AMGEAKTEVSSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGTQINIDEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+S EAKRRIE++T V+IGK+Y G V+++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDSAKADEAKRRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLTEGQVVKVKVLETDEKGRVKLSM 691
>sp|A4JGD4|PNP_BURVG Polyribonucleotide nucleotidyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=pnp PE=3 SV=1
Length = 715
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/693 (59%), Positives = 545/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +Q+K S LDL+VA
Sbjct: 123 NPDIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+IAI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 296
LI+++ ++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 ILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEHGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|Q0BDC6|PNP_BURCM Polyribonucleotide nucleotidyltransferase OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=pnp PE=3 SV=1
Length = 714
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/693 (59%), Positives = 544/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN----LTIDINDINC 296
LI+++ ++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDAQAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|B1YTR1|PNP_BURA4 Polyribonucleotide nucleotidyltransferase OS=Burkholderia ambifaria
(strain MC40-6) GN=pnp PE=3 SV=1
Length = 714
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/693 (59%), Positives = 544/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN----LTIDINDINC 296
LI+++ ++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDAQAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|B4E5M6|PNP_BURCJ Polyribonucleotide nucleotidyltransferase OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=pnp PE=3 SV=1
Length = 713
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/693 (59%), Positives = 548/693 (79%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 1 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 61 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +Q+K S LDL+VA
Sbjct: 121 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL ED++L A++FGHE+M+IAI+AI+ELV++ G+ + +W P K++
Sbjct: 181 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAPKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 296
LI+++ ++++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 241 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 421 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 540
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 541 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 600
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 601 TIASTSSDGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 660
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 661 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 693
>sp|Q39EE1|PNP_BURS3 Polyribonucleotide nucleotidyltransferase OS=Burkholderia sp.
(strain 383) GN=pnp PE=3 SV=1
Length = 715
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/693 (59%), Positives = 547/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +Q+K S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL ED++L A++FGHE+M++AI+AI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNEN----LTIDINDINC 296
LI+++ ++++ + AYQ+++KQ R K + + L ++ + + D +
Sbjct: 243 PLIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDASAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V +LS+FAPR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS NS EAK+RIE +T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTNSDGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|B1JVP5|PNP_BURCC Polyribonucleotide nucleotidyltransferase OS=Burkholderia
cenocepacia (strain MC0-3) GN=pnp PE=3 SV=1
Length = 715
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/693 (59%), Positives = 548/693 (79%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL E+++L A++FGHE+M+IAI+AI+ELV++ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAAKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 296
LI+++ ++++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V +LS+FAPR+IT+KI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|A0K927|PNP_BURCH Polyribonucleotide nucleotidyltransferase OS=Burkholderia
cenocepacia (strain HI2424) GN=pnp PE=3 SV=1
Length = 715
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/693 (59%), Positives = 548/693 (79%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL E+++L A++FGHE+M+IAI+AI+ELV++ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 296
LI+++ ++++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V +LS+FAPR+IT+KI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|Q1BV09|PNP_BURCA Polyribonucleotide nucleotidyltransferase OS=Burkholderia
cenocepacia (strain AU 1054) GN=pnp PE=3 SV=1
Length = 715
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/693 (59%), Positives = 548/693 (79%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GE+ARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK Y+AG+IPG FF+REG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLSV
Sbjct: 63 VDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSV 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V YID Y+LNPT +QLK S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL E+++L A++FGHE+M+IAI+AI+ELV++ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 296
LI+++ ++++ + AYQ+++KQ R K + + L ++ + D +
Sbjct: 243 ALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 363 LGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V +LS+FAPR+IT+KI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE++T +++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I
Sbjct: 603 TIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIV 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++RV I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERVKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|A9IGJ9|PNP_BORPD Polyribonucleotide nucleotidyltransferase OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=pnp
PE=3 SV=1
Length = 719
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/694 (60%), Positives = 546/694 (78%), Gaps = 4/694 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + KSF+YG + + +E GEIARQA+ +VLVS++DTV+LATVV+ K FFPLT
Sbjct: 1 MFNKVTKSFQYGQHTVVLETGEIARQASGAVLVSVDDTVVLATVVAAKKAKPGQTFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ NE+Q+V++ +SV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVLHTVSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+IDPDI ++IG S AL+IS +PF GP+G A+VGY+DG+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSQMDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE+KQL ED++L +++GHE+M+ AINAI++LV++ G+ W P K++
Sbjct: 181 GTENAVLMVESEAKQLSEDVMLGGVVYGHEQMQAAINAIHDLVRDAGKPDWEWQPEPKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDIN----DINC 296
LI+ + ++ K+ AYQ + KQ R +N+ D++++L + ++
Sbjct: 241 ALIAAVTAAAQEKLVAAYQERQKQARTALLRNVYADVHAALAEQAAAAGQDAPDAVTVDN 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE++I+R QIL+ RID R +RPI IR G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARIVRGQILNGEPRIDGRDTRTVRPIEIRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKRAL+ +L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALVSLL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P + F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP+ +HVAG+AMGLI D K
Sbjct: 421 PAHEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLQDHVAGVAMGLILDDGKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTQNGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMREALEGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
IAS + +EA+RRI +LT V++G+VY G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDEAQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ R+ I D LK Q+VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSV 694
>sp|Q1GXD2|PNP_METFK Polyribonucleotide nucleotidyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=pnp
PE=3 SV=1
Length = 714
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/685 (60%), Positives = 538/685 (78%)
Query: 5 ILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 64
I K+ YG +++++E GEIARQA +V+VS DTV+L +VV ++ +FFPLTVDY
Sbjct: 4 IKKTITYGQHELTLETGEIARQADGAVMVSYGDTVVLVSVVGKREVKEGQDFFPLTVDYQ 63
Query: 65 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 124
EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRP+RPLFPE + NE+Q+V V+S +P+I
Sbjct: 64 EKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSSDPEI 123
Query: 125 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 184
D DI +IIG S AL+IS +PF GP+G A+VGYI+G+Y+LNPT QLK++ LDL+VA TE
Sbjct: 124 DADIPAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTASQLKETALDLVVAATES 183
Query: 185 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 244
A++ VESE+K+LPED++L ++++GHE+M+I I+AINEL VG++ +W P + LI+
Sbjct: 184 AVLMVESEAKELPEDVMLGSVVYGHEQMQIVISAINELAAEVGKEPWDWAPPEPNTELIA 243
Query: 245 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 304
K+ ++ I +AY+IK+K R I + LI T + N+I I ++LE+K
Sbjct: 244 KVEALAGADINEAYKIKSKSARSSKLDEIRSRVLGELITETTSTSEANEIKSIFHNLEAK 303
Query: 305 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 364
++R QIL+ RID R +RPISIRTG+LPRTHGS+LFTRG+TQALVVATLGT RDEQ
Sbjct: 304 VVRSQILNGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQ 363
Query: 365 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 424
IDAL GE+ D FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRALL VLP+ +F Y
Sbjct: 364 IIDALQGEYADRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAVLPSQEEFGY 423
Query: 425 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 484
+IR+VSEITESNGSSSMASVCGGCL+LLDAGVP+ HVAGIAMGLIK+G +V +L+DILG
Sbjct: 424 TIRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRVAVLTDILG 483
Query: 485 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 544
DED GDMDFKVAGT +GITALQMDIKI GIT +I+++AL +AK+G +IL MK V +
Sbjct: 484 DEDHLGDMDFKVAGTESGITALQMDIKITGITAEIMRVALSQAKEGRLHILGLMKEAVGE 543
Query: 545 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 604
ELS+FAPR+IT+KI+P KIRDVIGKGG+ IR LTEETGT IDI ++G I I ++
Sbjct: 544 QPQELSEFAPRIITMKINPEKIRDVIGKGGAVIRALTEETGTTIDIEEDGTIKIGCTSAE 603
Query: 605 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 664
+G+EAK+RIE +T V++G+VY G VL+L DFGAI+ +L GKDGLLHISQI+ +RVN +
Sbjct: 604 AGEEAKKRIEAITAEVEVGQVYDGTVLKLLDFGAIVSLLPGKDGLLHISQIAHQRVNAVA 663
Query: 665 DFLKENQKVRVKVLGIDDRGRIKLS 689
DFLKE Q V+VKVL +DD+GR++LS
Sbjct: 664 DFLKEGQVVKVKVLEVDDKGRVRLS 688
>sp|B9MEL0|PNP_ACIET Polyribonucleotide nucleotidyltransferase OS=Acidovorax ebreus
(strain TPSY) GN=pnp PE=3 SV=1
Length = 727
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/690 (60%), Positives = 539/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F + KSF++G + +E GEIARQA+ +VLV+I+DTV+LATVV K +FFPLT
Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++D DIA++I VS ALS+S +PF GP+G A+VGY++G+Y+LNP K S LDL+VA
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL E+I+L A++FGHE+ K+AINAI+ELV++ G+ +W P KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
T I+K+ ++E K+R AYQI++KQ R + S + SL E + D + +L+D
Sbjct: 243 TFIAKVTALAEDKLRAAYQIRSKQARTQALREASASVLESL-KGEGVEFDAVKVEALLFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q+IDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ LP+ +
Sbjct: 362 RDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLPSKD 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IR+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+TIR LT+ETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIAA 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+ EAKRRIE++T V++GKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TEAAKADEAKRRIEEITAEVEVGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ D+L+E Q V+VKVL DD+GR+KLSM
Sbjct: 662 EKVGDYLQEGQVVKVKVLETDDKGRVKLSM 691
>sp|A1W4L8|PNP_ACISJ Polyribonucleotide nucleotidyltransferase OS=Acidovorax sp. (strain
JS42) GN=pnp PE=3 SV=1
Length = 727
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/690 (59%), Positives = 539/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F + KSF++G + +E GEIARQA+ +VLV+I+DTV+LATVV K +FFPLT
Sbjct: 3 IFNKVTKSFQWGDKTVVMETGEIARQASGAVLVNIDDTVVLATVVGSKQAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ NE+ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNEVHVVIHTISL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++D DIA++I VS ALS+S +PF GP+G A+VGY++G+Y+LNP K S LDL+VA
Sbjct: 123 NPEVDADIAAMIAVSAALSVSGIPFNGPIGAARVGYVNGEYVLNPGQTARKSSQLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL E+I+L A++FGHE+ K+AINAI+ELV++ G+ +W P KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGKVAINAIHELVRDAGKPVWDWQPPAKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
T I+K+ ++E K+R AYQI++KQ R + S + SL E + D + +L+D
Sbjct: 243 TFIAKVTALAEGKLRAAYQIRSKQARTQALREASASVLESL-KGEGVEFDAVKVEALLFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q+IDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ LP+ +
Sbjct: 362 RDAQRIDALAGEFEDRFIFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVACLPSKD 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IR+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + K E+S FAP+L T+KI+P KIRDVIGKGG+TIR LT+ETG QI+I ++G ITIA+
Sbjct: 542 AMGEAKTEISSFAPKLYTMKINPEKIRDVIGKGGATIRALTDETGCQINIEEDGTITIAA 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+ EAKRRIE++T V++GK+Y G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TEAAKADEAKRRIEEITAEVEVGKIYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ D+L+E Q V+VKVL DD+GR+KLSM
Sbjct: 662 EKVGDYLQEGQIVKVKVLETDDKGRVKLSM 691
>sp|Q7WCQ0|PNP_BORBR Polyribonucleotide nucleotidyltransferase OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=pnp PE=3 SV=1
Length = 719
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/694 (60%), Positives = 545/694 (78%), Gaps = 4/694 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + K+F+YG + + +E GE+ARQA+ +VLVS+EDTV+LATVV+ K + +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ N++Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP IDPDI ++IG S AL+IS +PF GP+G A+VGY+DG+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE+KQL E+I+L ++FGHE+M+ AINAI++LV++ G+ +W P K++
Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQTAINAIHDLVRDAGKPDWDWQPAPKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 296
LI+ + ++ + AYQI+ KQ R + + + +++ + D ++
Sbjct: 241 ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDN 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE++I+R QIL+ RID R +RPISIR G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKRALLP+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLPLL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP ++HVAG+AMGLI D K
Sbjct: 421 PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
IAS + +EA+RRI +LT V++G++Y G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ R+ I D LK Q VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQPVRVKVIEADDKGRLRLSI 694
>sp|Q7VZU0|PNP_BORPE Polyribonucleotide nucleotidyltransferase OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=pnp
PE=3 SV=1
Length = 719
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/694 (60%), Positives = 545/694 (78%), Gaps = 4/694 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + K+F+YG + + +E GE+ARQA+ +VLVS+EDTV+LATVV+ K + +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ N++Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP IDPDI ++IG S AL+IS +PF GP+G A+VGY+DG+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE+KQL E+I+L ++FGHE+M+ AINAI++LV++ G+ +W P K++
Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPDWDWQPAPKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 296
LI+ + ++ + AYQI+ KQ R + + + +++ + D ++
Sbjct: 241 ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDN 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE++I+R QIL+ RID R +RPISIR G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKRALLP+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLPLL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP ++HVAG+AMGLI D K
Sbjct: 421 PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
IAS + +EA+RRI +LT V++G++Y G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ R+ I D LK Q VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQPVRVKVIEADDKGRLRLSI 694
>sp|Q7W570|PNP_BORPA Polyribonucleotide nucleotidyltransferase OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=pnp PE=3 SV=1
Length = 719
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/694 (60%), Positives = 545/694 (78%), Gaps = 4/694 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + K+F+YG + + +E GE+ARQA+ +VLVS+EDTV+LATVV+ K + +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ N++Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP IDPDI ++IG S AL+IS +PF GP+G A+VGY+DG+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVLNPTATQLKSSKMDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE+KQL E+I+L ++FGHE+M+ AINAI++LV++ G+ +W P K++
Sbjct: 181 GTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPDWDWQPAPKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTI----DINDINC 296
LI+ + ++ + AYQI+ KQ R + + + +++ + D ++
Sbjct: 241 ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDN 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE++I+R QIL+ RID R +RPISIR G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKRALLP+L
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALLPLL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P F Y+IRLVSEITESNGSSSMASVCGG LA++DAGVP ++HVAG+AMGLI D K
Sbjct: 421 PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
IAS + +EA+RRI +LT V++G++Y G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ R+ I D LK Q VRVKV+ DD+GR++LS+
Sbjct: 661 NYRIANINDVLKVGQPVRVKVIEADDKGRLRLSI 694
>sp|Q2KWI6|PNP_BORA1 Polyribonucleotide nucleotidyltransferase OS=Bordetella avium
(strain 197N) GN=pnp PE=3 SV=1
Length = 718
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/694 (60%), Positives = 547/694 (78%), Gaps = 4/694 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + K+F+YG + + +E GEIARQA+ +VLVS+EDTV+LATVV+ K +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRP+RPLFPEG+ NE+Q+V++ LSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+IDPDI ++IG S AL+IS +PF GP+G A+V Y++G+Y+LNPT QLK S +DL+VA
Sbjct: 121 NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVAYVEGQYLLNPTASQLKSSKMDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL E+I+L ++FGHE+M+ AINAI++LV++ G+ + W P K++
Sbjct: 181 GTENAVLMVESEAQQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPEWTWSPAAKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENL----TIDINDINC 296
LI+ + ++ + AYQI+ KQ R + + ++ + L + D ++
Sbjct: 241 ALIAAVTAAAQEGLSAAYQIREKQARTTKLREVYAEVSAKLAEQAAAAGQDAPDGVTVDN 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE++++R QIL+ RID R +RPIS+R G+LPR HGS+LFTRG+TQALVVAT
Sbjct: 301 ILFDLEARLVRSQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT +DEQ IDALMGE+ D FMLHYNMPPFATG+ GRIGVPKRREIGHGRLAKR+L+PVL
Sbjct: 361 LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVPVL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P F Y+IR+VSEITESNGSSSMASVCGG LA++DAGVPI++HVAG+AMGLI + K
Sbjct: 421 PKPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPITDHVAGVAMGLILENGKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +A++G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAREGRLHILG 540
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM+ + + ELS FAPR++TIKI+P KIRDVIGKGG+TIR LTEETGTQIDI+D+G I
Sbjct: 541 KMRESLDGSRTELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI 600
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
IAS + +EA+RRI +LT V++G+VY G VLRL DFGAI+++L G+DGLLHIS+I+
Sbjct: 601 VIASVDEGQAKEAQRRIVELTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIA 660
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ R+ I D LK Q+VRVKV+ D++GR++LS+
Sbjct: 661 NYRIANINDVLKVGQQVRVKVIEADEKGRLRLSV 694
>sp|B2T2E3|PNP_BURPP Polyribonucleotide nucleotidyltransferase OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=pnp PE=3 SV=1
Length = 718
Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/693 (59%), Positives = 544/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF I+K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV K +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE++QL E+++L ++FGHE+M+IAI+AI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
LI+++ +++ + AYQ+++KQ R K + SK + + D +
Sbjct: 243 PLIARVTELAQADLLAAYQLRDKQARSAKLKEVYAATSKKLEEDAAAGGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQA+VVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILS 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V LS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>sp|B2JDN2|PNP_BURP8 Polyribonucleotide nucleotidyltransferase OS=Burkholderia phymatum
(strain DSM 17167 / STM815) GN=pnp PE=3 SV=1
Length = 712
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/693 (59%), Positives = 539/693 (77%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F ++K FK+G + + +E GEIARQA+ +VLV +EDTV+LATVV K +FFPLT
Sbjct: 3 LFNKVVKEFKWGQHTVRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK Y+AG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++V+S+
Sbjct: 63 VDYIEKTYSAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVMSI 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++ DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRSQIKGSRLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QLPED++L A++FGHE+M+ AI+AI+ELV+ G+ + W K++
Sbjct: 183 GTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKAEWEWQAAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNI----SKDIYSSLIDNENLTIDINDINC 296
LIS++ I+ +++ AYQ ++KQ R K + + + D +
Sbjct: 243 ALISRVNEIAYNELLSAYQTRDKQARSTKLKEVYAATQAKLEEEAAAAGTVAADKASVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ +F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT +G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V ELS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGVNTELSAYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ +L GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITAEVEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISEIA 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++R+ I D+LKE Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKEGQQVKVKVIQTDEKGRVRLS 695
>sp|Q142H7|PNP_BURXL Polyribonucleotide nucleotidyltransferase OS=Burkholderia
xenovorans (strain LB400) GN=pnp PE=3 SV=1
Length = 716
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/693 (59%), Positives = 545/693 (78%), Gaps = 4/693 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF I+K F++G +K+ +E GEIARQA+ +V+V +EDTV+LATVV + +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGARTAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S LPF GP+G A+V YI+ +Y+LNPT Q+K+S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE++QL E+++L ++FGHE+M+IAI+AI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNE----NLTIDINDINC 296
LI+++ +++ + AYQ+++KQ R K I + L ++ + D +
Sbjct: 243 PLIARVTELAQADLLAAYQLRDKQARSAKLKEIYAATSAKLEEDAAAGGTVAADKATVGN 302
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
+L+D+E+KI+R QIL+ RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVAT
Sbjct: 303 VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT 362
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT DEQ IDAL GE+ + FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL L
Sbjct: 363 LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL 422
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P+ ++F YSIR+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLI +G K
Sbjct: 423 PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF 482
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 483 AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITREIMQVALAQAKEGRLHILG 542
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM + V LS +APR+ITIKI+P KIRDVIGKGGS IR LTEETGT IDI+D+G++
Sbjct: 543 KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV 602
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS +S EAK+RIE +T V++G+VY G VL+L DFGAI+ IL GKDGLLHIS+I+
Sbjct: 603 TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA 662
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLS 689
++R+ I D+LK+ Q+V+VKV+ D++GR++LS
Sbjct: 663 NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLS 695
>sp|Q0KCT4|PNP_CUPNH Polyribonucleotide nucleotidyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pnp
PE=3 SV=1
Length = 723
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/690 (59%), Positives = 545/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF I+K F++G + + +E GEIARQA +VLV +EDTV+LATVV+ K+P +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHTVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKNPKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+V++V+S+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVVSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++ DI ++IG S AL++S +PF GP+G A+VGY DG+Y+LNPT QL S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQLATSDLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL ED++L A+++GHE+M+IAINAI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHELVREGGKPEWDWAPAAKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
LI+K+ ++ +++AYQ++ K R K ++ ++ ++L + D ++ I++D
Sbjct: 243 PLIAKVTEVALPLLQEAYQLRQKSARSQKLKEVNANVAAALA-AAGVEADKVEVGNIMFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
LE+KI+R Q+L RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQVLAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +A++G +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAREGRLHILHKMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
I D+LKE Q+VRVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQQVRVKLIQADEKGRLRLSL 691
>sp|A2SFM2|PNP_METPP Polyribonucleotide nucleotidyltransferase OS=Methylibium
petroleiphilum (strain PM1) GN=pnp PE=3 SV=1
Length = 751
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/690 (60%), Positives = 534/690 (77%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F I K+F++G + +++E GEIARQ+ +V+V ++ TV+LATVV+ K+P +FFPLT
Sbjct: 3 LFNKITKTFQWGQHTVTLETGEIARQSGGAVIVDMDGTVVLATVVAAKNPKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPGSFFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+VV+VLS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+ DIA++IG S AL+IS +PF GP+G A+VGYI+G+Y+LNP QL S LDL+VA
Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPIGAARVGYINGEYVLNPGPTQLADSKLDLIVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE+ QLPEDI+L ++FGHE+ IA+ INELV+ G+ + W P KD+
Sbjct: 183 GTEAAVLMVESEADQLPEDIMLGGVVFGHEQGNIAVRVINELVREAGKPEWQWTPPAKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
I+K+ + E K+R AYQI++KQ R + ++ ++L E +D + +L+D
Sbjct: 243 DFIAKVNGLGEAKLRAAYQIRSKQDRTQATRAAYAEVLAALA-AEGAAVDKVKVENLLFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E+KI+R QIL RID R +RPI IR+ +LPRTHGS+LFTRG+TQALV+ TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVITTLGTE 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q+IDAL GEF D FM HYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP +
Sbjct: 362 RDTQRIDALAGEFEDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKKD 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIKDG + +L+
Sbjct: 422 EFAYAIRVVSEITESNGSSSMASVCGGCLSMMDAGVPLKAHVAGIAMGLIKDGNRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+ +IL KM
Sbjct: 482 DILGDEDHLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ K ELS FAPRL +KI+P KIRDVIGKGG+TIR LTEETGTQI+I ++G ITIAS
Sbjct: 542 ALGGAKEELSVFAPRLYVMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+ Q A +RIE++T +IGKVY G V ++ DFGA++ IL GKDGLLHISQI+ +RV
Sbjct: 602 TDGDKAQAAMKRIEEITAEAEIGKVYEGPVTKILDFGALVNILPGKDGLLHISQIAHQRV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+TDFL E Q V+VKVL D++GRIKLS+
Sbjct: 662 EKVTDFLTEGQIVKVKVLETDEKGRIKLSL 691
>sp|Q21YD1|PNP_RHOFD Polyribonucleotide nucleotidyltransferase OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=pnp PE=3 SV=1
Length = 706
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 539/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F + K+F++G +++E GEIARQA+ +VL+ ++ TV+LATVV+ + + +FFPLT
Sbjct: 3 IFNKVTKTFQWGQNTVTMETGEIARQASGAVLLDMDGTVVLATVVAKTEGKAGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAG+IPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+ +VV+ LS+
Sbjct: 63 VDYLEKTYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTLSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++D DIA++I VS ALS+S +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAALIAVSAALSVSGIPFSGPIGAARVGYINGEYVLNPGQTARKDSVMDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL E+I+L A++FGHE+ IAINAI+ELV++ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAINAIHELVRDAGKPVWDWKAPAKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
LI+K+ ++ HK+ AYQI+NKQ R + + + L + + D + +L+D
Sbjct: 243 PLIAKVGALAAHKLEAAYQIRNKQARTRACREAYAVVMADL-KLDGVAFDSVAVEGMLFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTE 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q+IDAL G++ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 362 RDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALMAVLPSKE 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + K E+S FAPRL T+KI+P KIRDVIGKGGS IR LTEETGTQI+I+++G ITIAS
Sbjct: 542 AMAEAKTEVSTFAPRLFTMKINPDKIRDVIGKGGSVIRALTEETGTQINIDEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+ +EAKRRI+++T V+IGK+Y G + ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 ADPAKAEEAKRRIQQITAEVEIGKIYEGPITKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+TD+L E Q V+VKV+ D++GRIKLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVMETDEKGRIKLSM 691
>sp|A9BNB8|PNP_DELAS Polyribonucleotide nucleotidyltransferase OS=Delftia acidovorans
(strain DSM 14801 / SPH-1) GN=pnp PE=3 SV=1
Length = 753
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/690 (58%), Positives = 539/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F + K+F++G + +++E GEIARQA+ +VLV+I+DTV+LATVV+ K S +FFPLT
Sbjct: 3 IFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVASKQAKSGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+ N++ +V++ +S+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTVSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++D DIA++I S ALS+S +PF GP+G A+VG+I+G+Y+LNP Q K S +DL+VA
Sbjct: 123 NPEVDADIAALIATSAALSVSGIPFNGPIGAARVGFINGEYVLNPGQTQRKDSQMDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QLPED++L A++FGHE+ +IAI+AI+ELV+ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAQQLPEDVMLGAVVFGHEQGRIAIDAIHELVREAGKPVWDWVAPAKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
LI+K+ + + +R AYQI+NKQ R + + + L + + D + +L+D
Sbjct: 243 ELIAKVAALGDEALRTAYQIRNKQSRTQACREAYAAVKAGLT-AQGVEFDGVKVEGMLFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E++I+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV+TLGT
Sbjct: 302 IEARIVRSQILAGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVSTLGTE 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q+IDAL GEF D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL LP+
Sbjct: 362 RDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSKE 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + K E+S FAP+L T+KI+P KIRDVIGKGGSTIR LTEETGTQIDI ++G ITIAS
Sbjct: 542 AMGEAKAEISSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQIDIGEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
++ EAKRRIE++T V+IGK+Y G V ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 SDAAKADEAKRRIEEITAEVEIGKIYEGPVTKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ D+L+E Q ++VKV+ D++GR+KLS+
Sbjct: 662 ERVADYLQEGQIIKVKVMETDEKGRVKLSL 691
>sp|Q473U7|PNP_CUPPJ Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=pnp PE=3
SV=1
Length = 728
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/690 (59%), Positives = 544/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G + + +E GEIARQA +V+V +EDTV+LATVV+ K P +FFPLT
Sbjct: 3 MFNKVVKQFQWGQHTVRMETGEIARQAGGAVIVDVEDTVVLATVVAAKSPKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+VV+V+S+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++IG S AL++S +PF GP+G A++GY DG+Y+LNPT Q+ S LDL+VA
Sbjct: 123 NPEIPADIPALIGASAALAVSGIPFNGPVGAARIGYKDGQYLLNPTRSQMATSDLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL ED++L A+++GHE+M+IAINAI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
LI+K+ ++ +++AYQ++ K R K +S ++ ++L + + D ++ I++D
Sbjct: 243 ALIAKVTEVALPLLQEAYQLRQKSARSQKLKEVSANVTAALAE-AGVDADKVEVGNIMFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
LE+KI+R QIL RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQILGGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGAMQG 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTDGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
I D+LKE Q++RVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQQLRVKLIQADEKGRLRLSL 691
>sp|A1VM56|PNP_POLNA Polyribonucleotide nucleotidyltransferase OS=Polaromonas
naphthalenivorans (strain CJ2) GN=pnp PE=3 SV=1
Length = 703
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/690 (59%), Positives = 536/690 (77%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F + KSF++G +K+++E GE+ARQA +VL+ ++ TV+LATVV+ D +FFPLT
Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSDAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAGRIPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+++ DI ++I S ALSIS +PF GP+G A+V YI+G+Y+LNP QL+ S +DL+VA
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYINGEYVLNPGKTQLQNSTMDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE+KQL E+I+L AI+FGHE+ IAINAI+ELV++ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDAGKPVWDWKAPAKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
LI+K++ ++E K+ AYQI+NKQ R + ++ L E + D + +L+D
Sbjct: 243 VLIAKVVALAEEKLVAAYQIRNKQARTHATRQVTTWTKMGL-KAEGVEFDGVAVEGMLFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E+KI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEAKIVRSQILAGDPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTE 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q+IDAL G++ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP+
Sbjct: 362 RDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPSKE 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + E+S FAPRL +KI+P KIRDVIGKGG+ IR LTEETGTQI+I ++G ITIAS
Sbjct: 542 AMGQANAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+S EAKRRI ++T V+IGKVY G + ++ DFGA++ ++ GKDGLLHISQI+ +RV
Sbjct: 602 NDSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLMPGKDGLLHISQIAHERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+TD+L E Q ++VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIIKVKVLETDEKGRVKLSM 691
>sp|Q8XXP6|PNP_RALSO Polyribonucleotide nucleotidyltransferase OS=Ralstonia solanacearum
(strain GMI1000) GN=pnp PE=3 SV=1
Length = 717
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/690 (59%), Positives = 545/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF I+K F++G++K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+ +FFPLT
Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNAKPGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL E+++L A+++GHE+M+IAINAI++LV++ G+ + +W K++
Sbjct: 181 GTERAVLMVESEANQLSEEVMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
L++K+ + ++ AYQ++ K R K + + + L + + D +++ IL++
Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAE-AGVEADGVEVDNILFE 299
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
LESKI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 300 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 359
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP +
Sbjct: 360 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKED 419
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 420 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 479
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 480 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQA 539
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + ELS+ APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 540 AMGHARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIAS 599
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+S EAKRRIE +T ++GK+Y+G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 600 TSSEGMAEAKRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 659
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 660 NQVSDYVKEGQMVRVKLLSTDEKGRMRLSI 689
>sp|A1K7B5|PNP_AZOSB Polyribonucleotide nucleotidyltransferase OS=Azoarcus sp. (strain
BH72) GN=pnp PE=3 SV=1
Length = 699
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/686 (59%), Positives = 535/686 (77%)
Query: 5 ILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 64
I K+F YG++ +++E GE+ARQA +V+V+++DTV+LATVV+ KD +FFPLTVDY+
Sbjct: 5 IKKTFTYGAHTVTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLTVDYV 64
Query: 65 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 124
EK YAAGRIPG FFKREG+P+E+ET+ SRLIDRPIRPLFPEG+ NE+Q++V VLS+NP++
Sbjct: 65 EKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSLNPEV 124
Query: 125 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 184
D DI ++I S ALSIS +PF GP+G A+VGY DG+Y+LNPT EQLK S L+L+VAGT
Sbjct: 125 DADIPAMIAASAALSISGIPFDGPIGAARVGYADGQYLLNPTVEQLKTSKLNLVVAGTAS 184
Query: 185 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 244
A++ VESE+ +L E ++L A++FGHE+M+ AINAINELV+ G+ + NW P + L++
Sbjct: 185 AVLMVESEADELSEQVMLGAVVFGHEQMQAAINAINELVEVAGKPEWNWQPPAANDALVA 244
Query: 245 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 304
++ ++ + +A++I +KQ R I K ++L D + N+I I + LE+
Sbjct: 245 RVKELALADVEEAFRITSKQARTERLSEIRKRTIAALTDGVDNAPSENEIKDIFFTLEAG 304
Query: 305 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 364
+R +IL+ RID R +RPI IR G+LPRTHGS+LFTRG+TQALVVATLGT RDEQ
Sbjct: 305 TVRSRILNGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQ 364
Query: 365 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 424
IDA+ GE+ + FMLHYN PPF+TG+ GR GV KRREIGHGRLAKRAL+ +LP F+Y
Sbjct: 365 IIDAIAGEYKERFMLHYNFPPFSTGETGRFGVTKRREIGHGRLAKRALVAMLPKGEDFSY 424
Query: 425 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 484
+IR+VSEITESNGSSSMASVCGG LAL+DAGVP+ +HVAGIAMGLIKDG + +L+DILG
Sbjct: 425 TIRVVSEITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLIKDGNRFAVLTDILG 484
Query: 485 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 544
DED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q+AL +A +G +IL++MK +
Sbjct: 485 DEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQMKDALGV 544
Query: 545 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 604
+ E+S+FAPR++ +KI+P KIRDVIGKGG+ IR L EETGT I+I D+G ITI+S ++
Sbjct: 545 ARGEVSEFAPRMLNMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSITISSVSAE 604
Query: 605 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 664
Q+AK RIE +T V++GKVY G V+RL DFGAI+ IL G+DGLLH+SQI+++RVN +
Sbjct: 605 GAQKAKARIEDITAEVEVGKVYEGTVVRLLDFGAIVNILPGRDGLLHVSQIANERVNNVG 664
Query: 665 DFLKENQKVRVKVLGIDDRGRIKLSM 690
D++KE Q VRVKVL D+RG+I+LSM
Sbjct: 665 DYVKEGQAVRVKVLETDERGKIRLSM 690
>sp|Q127W8|PNP_POLSJ Polyribonucleotide nucleotidyltransferase OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=pnp PE=3 SV=1
Length = 707
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/690 (59%), Positives = 537/690 (77%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F + KSF++G +K+++E GE+ARQA+ +V+V ++ TV+LATVV+ D +FFPLT
Sbjct: 3 IFNKVTKSFQWGQHKVTMETGEVARQASGAVVVDMDGTVVLATVVAKTDAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAGRIPGSFFKREG+PSE ET+ SRLIDRPIRPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHVLSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+++ DI ++I S ALSIS +PF GP+G A+V Y+DG+Y+LNP QLK S +DL+VA
Sbjct: 123 NPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYVDGQYVLNPGKTQLKDSKMDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL E+I+L A++FGHE+ IAINAI+ELV++ G+ +W KD+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGAVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
LI+K+ ++ K++ AYQI++KQ R + D+ ++L + + D + +L+D
Sbjct: 243 PLIAKVNELAGAKLQAAYQIRSKQARTQACRVAYADVMAAL-KADGVAFDGVTVEGMLFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E+KI+R QIL RID R +R I IR +LPRTHGS+LFTRG+TQALVV TLGT
Sbjct: 302 IEAKIVRSQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTE 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q+IDAL G++ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPTKE 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y++R+VSEITESNGSSSMASVCGGCL+L+DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + K E+S FAPRL +KI+P KIRDVIGKGG+ IR LTEETGTQI+I ++G ITIAS
Sbjct: 542 AMGEAKAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQINIEEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+S EAKRRI ++T V+IGKVY G + ++ DFGA++ +L GKDGLLHISQI+ +RV
Sbjct: 602 NDSAKADEAKRRIAEITAEVEIGKVYEGAITKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVLETDEKGRVKLSM 691
>sp|B3R3W3|PNP_CUPTR Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
taiwanensis (strain R1 / LMG 19424) GN=pnp PE=3 SV=1
Length = 723
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/690 (59%), Positives = 543/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GEIARQA +VLV +EDTV+LATVV+ K P +FFPLT
Sbjct: 3 MFNKVVKEFQWGQHKVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKSPKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+VV+V+S+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++ DI ++IG S AL++S +PF GP+G A+VGY DG+Y+LNPT Q+ S LDL+VA
Sbjct: 123 NPEVPADIPALIGASAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRSQIATSDLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL ED++L A+++GHE+M+ AINAI+ELV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEANQLSEDVMLGAVVYGHEQMQTAINAIHELVREGGKPEWDWAPAAKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
LI+K+ ++ +++AYQ++ K R K +S ++ ++L + D ++ I++D
Sbjct: 243 PLIAKVTEVALPLLQEAYQLRQKSARSQKLKEVSANVAAALA-EAGVEADKVEVGNIMFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
LE+KI+R QIL+ RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP +
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKED 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSNMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTEGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
I D+LKE Q+VRVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQQVRVKLIQADEKGRLRLSL 691
>sp|C5CT24|PNP_VARPS Polyribonucleotide nucleotidyltransferase OS=Variovorax paradoxus
(strain S110) GN=pnp PE=3 SV=1
Length = 772
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (58%), Positives = 534/690 (77%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F + KSF++G + +E GEIARQA+ +V+V I+ TVILATVV+ K +FFPLT
Sbjct: 3 LFNKVTKSFQWGDKTVVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPGSFFKRE KPSE ET+ SRLIDRPIRPLFPEG+LNE+ +V++ LS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTLSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++D DIA++IGVS ALSIS +PF GP+G A+VGYI+G+Y+LNP K S +DL+VA
Sbjct: 123 NPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL E+I+L ++FGHE+ IAINAI+ELV++ G+ +W +D+
Sbjct: 183 GTEAAVLMVESEAQQLSEEIMLGGVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAEDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
++K+ +++E K+R YQI++KQ R + + + ++L ++ D +N +L+
Sbjct: 243 AFVAKVKSLAEEKLRAVYQIRSKQARTQALREANASVMNTLKES-GEPFDAGKVNDLLFA 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+ESKI+R QIL RID R +RPI IR +LPRTHGS+LFTRG+TQ LVV TLGT
Sbjct: 302 IESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGTE 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q+IDAL GE+ D F+ HYNMPPFATG++GR+G KRREIGHGRLAKRAL+ VLP
Sbjct: 362 RDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKE 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IR+VSEITESNGSSSMASVCGGCL+++DAGVP+ HVAGIAMGLIK+ + +L+
Sbjct: 422 EFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+ +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + K E+S+FAPRL T+KI+P KIRDVIGKGG+ IR L EETGT I+I+++G ITIAS
Sbjct: 542 AMGEAKTEVSQFAPRLTTLKINPEKIRDVIGKGGAVIRGLQEETGTTINIDEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+ + AK+RIE++T V+IGKVY G V ++ DFGA+I +L GKDGLLHISQI+ +RV
Sbjct: 602 TDPEKAEFAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+TD+L E Q V+VKVL D++GR+KLSM
Sbjct: 662 EKVTDYLSEGQIVKVKVLETDEKGRVKLSM 691
>sp|Q1LPW7|PNP_RALME Polyribonucleotide nucleotidyltransferase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=pnp PE=3 SV=1
Length = 725
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/690 (59%), Positives = 540/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF I+K F++G + + +E GEIARQA+ +V+V +EDTV+LATVV+ K P + +FFPLT
Sbjct: 3 MFNKIVKEFQWGQHTVRMETGEIARQASGAVIVDVEDTVVLATVVAAKSPKAGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ N++Q+V++VLS+
Sbjct: 63 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVIHVLSI 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I DI ++I S AL++S +PF GP+G A+VGY DG+Y+LNPT Q+ S LDL+VA
Sbjct: 123 NPEIPADIPALIASSAALAVSGIPFNGPVGAARVGYKDGQYLLNPTRAQIAASDLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE+ QL ED++L A+++GHE+M+IAINAI++LV+ G+ + +W P K++
Sbjct: 183 GTERAVLMVESEAHQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWAPAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
LI+K+ I +++AYQ++ K R K I + + L + + D ++ +L+D
Sbjct: 243 ALIAKVSEIGLPLLQQAYQLRQKSARSTKLKEIYATVQAQLAEA-GVEADKVEVGNVLFD 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
LE+KI+R QIL RID R +RPI IR+ +LPR HGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKIVRGQILAGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTK 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP ++
Sbjct: 362 SDEQIIDALAGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDD 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IRLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAG+AMGLI +G K +L+
Sbjct: 422 EFAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT GITALQMDIK+ GIT +I+Q+AL +A++G +IL M+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAREGRMHILGAMQG 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + ELS APR+IT+KI P KIR+VIGKGGSTI+ LT+ETGT IDI ++G ITIAS
Sbjct: 542 AMGHARTELSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGTTIDIQEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
++ EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I ++RV
Sbjct: 602 TSTDGMAEAKRRIEGITAEAEVGKIYAGTVLKLLDFGAIVNILPGKDGLLHISEIVNERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
I D+LKE Q+VRVK++ D++GR++LS+
Sbjct: 662 KDIKDWLKEGQQVRVKLIQADEKGRLRLSL 691
>sp|Q2Y5X9|PNP_NITMU Polyribonucleotide nucleotidyltransferase OS=Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849) GN=pnp
PE=3 SV=1
Length = 701
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/686 (58%), Positives = 532/686 (77%)
Query: 5 ILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 64
I KS YGS++++ E GEIARQA ++++VS+ DTV+L TVV K +FFPLTVDY
Sbjct: 3 IKKSVTYGSHQLTFETGEIARQAHAAIMVSMGDTVVLVTVVGAKSAKQGQDFFPLTVDYQ 62
Query: 65 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 124
E++YAAGRIPGSFFKREG+PSE+E + SRLIDRPIRPLFPE + NE+Q+V VLS + ++
Sbjct: 63 ERSYAAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPENFYNEVQVVATVLSSDNEV 122
Query: 125 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 184
D DI +++G S AL +S +PF GP+G A++GYI+G+Y+LNP T LK++ L+L+VAGT +
Sbjct: 123 DADIPAMLGASAALVLSGIPFNGPIGAARIGYINGEYVLNPDTSALKQTQLNLVVAGTRQ 182
Query: 185 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 244
A++ VES++ +L ED++L AI++GH++M++AI+AINEL G +W+P +D L
Sbjct: 183 AVLMVESDAMELSEDVMLGAIVYGHQQMQVAIDAINELADEAGVTAWDWEPPARDPALAV 242
Query: 245 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 304
KI ++E+ +R A++ K KQ+R T NI +++ L + D + + LES+
Sbjct: 243 KIAELAENDLRAAFRQKQKQVRSETIDNIWTRVFTELGVEDGEGPDAQAVKEACFALESR 302
Query: 305 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 364
I+R QILD RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALVVATLGT RDEQ
Sbjct: 303 IVRSQILDGEPRIDGRDTRTVRPITIRTGLLPRTHGSALFTRGETQALVVATLGTGRDEQ 362
Query: 365 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 424
KIDAL G++++ FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRAL+ VLP+ +F Y
Sbjct: 363 KIDALQGDYSERFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAVLPSPEEFGY 422
Query: 425 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 484
S+R+VSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G + +L+DILG
Sbjct: 423 SLRVVSEITESNGSSSMASVCGGCLALMDAGVPLKGHVAGIAMGLIKEGNRFAVLTDILG 482
Query: 485 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 544
DED GDMDFKVAGT NGITALQMDIKI GIT +I+ AL +A++G +IL M+ +P
Sbjct: 483 DEDHLGDMDFKVAGTENGITALQMDIKIQGITKEILHAALVQAREGRMHILAIMRQVLPA 542
Query: 545 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 604
+ ++S+ APR+I I+I+P KIRDVIGKGG+ IR LTEETGT IDI D+G + IA N+
Sbjct: 543 RREDISEHAPRIIKIRINPEKIRDVIGKGGAVIRALTEETGTTIDITDDGTVMIACVNAE 602
Query: 605 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 664
G+ AK+RIE +T V++G+VY G VL+L DFGAI+ +L GKDGLLHISQI+++RVN +
Sbjct: 603 GGELAKKRIEDITAEVEVGRVYDGTVLKLLDFGAIVSVLPGKDGLLHISQIANERVNNVG 662
Query: 665 DFLKENQKVRVKVLGIDDRGRIKLSM 690
D LKE Q VRVKVL DD+GR++LSM
Sbjct: 663 DHLKEGQVVRVKVLEADDKGRLRLSM 688
>sp|Q5NZR7|PNP_AROAE Polyribonucleotide nucleotidyltransferase OS=Aromatoleum aromaticum
(strain EbN1) GN=pnp PE=3 SV=1
Length = 699
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/686 (57%), Positives = 539/686 (78%)
Query: 5 ILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 64
I K+F YG++ +++E GEIARQA +V+V+++DT++LATVV+ K+ + +FFPLTVDY+
Sbjct: 5 IKKTFAYGAHTVTLETGEIARQAGGAVIVNMDDTIVLATVVAAKEAKAGQDFFPLTVDYV 64
Query: 65 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 124
EK YAAGRIPG FFKREG+P+E+ET+ SRLIDRPIRPLFPEG+ NE+Q+++ VLS+NP++
Sbjct: 65 EKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIITVLSLNPEV 124
Query: 125 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 184
DPDI ++IG S AL+IS +PF GP+G +VGY G+Y+LNPT EQLK S L+L+VAGTE
Sbjct: 125 DPDIPAMIGASAALAISGVPFDGPIGACRVGYSGGQYLLNPTVEQLKASELNLVVAGTEA 184
Query: 185 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 244
A++ VESE+++L E+++L A++FGH++M++AI AINELV+ G+ + +W P K++ LI+
Sbjct: 185 AVLMVESEARELSEEVMLGAVVFGHQQMQVAIRAINELVEVAGKPEWDWQPPAKNEPLIA 244
Query: 245 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 304
+I ++ + +A++I +KQ R I K + + D + N++ I +DLE+
Sbjct: 245 RIKELAGAHLEEAFRITSKQARTQRINEIRKQTFGVVADGVEVPPTGNELKDIFHDLEAG 304
Query: 305 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 364
++R +IL RID R +RPI IR G+LPRTHGS+LFTRG+TQALV+ATLGT RDEQ
Sbjct: 305 VVRSRILAGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVIATLGTGRDEQ 364
Query: 365 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 424
IDA+ GE+ +SF+LHYN PPF+TG+ GR+GV KRRE+GHGRLAKRAL+ LP + F+Y
Sbjct: 365 IIDAIAGEYRESFLLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALIAALPADEDFSY 424
Query: 425 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 484
++R+VSEITESNGSSSMASVCG LA++DAGVP+ HVAGIAMGLIK+G + +L+DILG
Sbjct: 425 TVRVVSEITESNGSSSMASVCGASLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLTDILG 484
Query: 485 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 544
DED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +A +G +IL MK +
Sbjct: 485 DEDHLGDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAGEGRIHILALMKQALAS 544
Query: 545 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 604
+ E+S+FAPR++T+KI+P KIRDVIGKGG+ IR L EETGT I++ D+G +TI+S ++
Sbjct: 545 HRGEVSEFAPRMLTMKINPEKIRDVIGKGGAVIRGLQEETGTVIELQDDGSVTISSVSAE 604
Query: 605 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 664
Q AK +IE +T V++GKVY G V+RL DFGAI+ I+ G+DGLLH+SQI+++RVN +
Sbjct: 605 GAQLAKEKIEAITAEVEVGKVYNGTVVRLLDFGAIVNIMPGRDGLLHVSQIANERVNNVA 664
Query: 665 DFLKENQKVRVKVLGIDDRGRIKLSM 690
D++KE Q VRVKVL D+RG+I+LSM
Sbjct: 665 DYVKEGQAVRVKVLETDERGKIRLSM 690
>sp|A4SXQ7|PNP_POLSQ Polyribonucleotide nucleotidyltransferase OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=pnp PE=3 SV=1
Length = 722
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/690 (58%), Positives = 540/690 (78%), Gaps = 2/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF+ +KSF++G++++++E GEIARQ+ +V+V+++DTV++ TVV+ K +FFPLT
Sbjct: 3 MFKKAVKSFQWGNHQVTMETGEIARQSGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAG+IPG FF+REG+PSE ET+ISRLIDRP+RPLFPEG+LNE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVLSI 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP + DI ++I S AL+IS +PF GP+G A+VGY +G+Y+LNPT + S LDL+VA
Sbjct: 123 NPDVPSDIPALIAASAALAISGIPFAGPVGAARVGYANGQYLLNPTRTEQATSELDLIVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GT+ A++ VESE+ QL E+++L A+++GH++M+ AINAINELV G+ + +W KD+
Sbjct: 183 GTQAAVLMVESEANQLSEEVMLGAVVYGHDQMQTAINAINELVAEAGKPEWDWTAAPKDE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
I+K+ ++E +R+AYQI+ K R K I+K++ + L E +D +N IL++
Sbjct: 243 PFIAKVTALAEAPLREAYQIRQKGARSDKLKEITKEVMAKL--QEEGDVDAVAVNDILFE 300
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E+KI+R QIL+ RID R +RPI IR G+LPRTHGS+LFTRG+TQALVVATLGT+
Sbjct: 301 IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA 360
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RDEQ IDAL GE+ D FM HYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+PVLP+
Sbjct: 361 RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE 420
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
F YSIR+VSEITESNGSSSMASVCGGCLA++DAGVP+ HVAG+AMGLI DG + +L+
Sbjct: 421 DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT 480
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT NGITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 481 DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE 540
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + ELS APR+++ KI P KIR+VIGKGG+TI+ LT+ETG IDI D+G +TIAS
Sbjct: 541 AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS 600
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
++ EAK RIE +T ++GK+Y G V++L +FGA++ IL GKDGLLHIS+IS++RV
Sbjct: 601 TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV 660
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ D+L E Q VRVK+L D+RGR++LS+
Sbjct: 661 KEVKDYLAEGQVVRVKLLAADERGRLRLSL 690
>sp|B2U7R6|PNP_RALPJ Polyribonucleotide nucleotidyltransferase OS=Ralstonia pickettii
(strain 12J) GN=pnp PE=3 SV=1
Length = 724
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (58%), Positives = 542/690 (78%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF ++K F++G +K+ +E GEIARQA+ +VL+ ++DTV+LATVV K+P +FFPLT
Sbjct: 3 MFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAG+IPG FFKREG+PSE ET+ SRLIDRP+RPLFPEG+ NE+Q+V++VLS+
Sbjct: 63 VDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSI 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP++ DI +++ S AL++S LPF GP+G A+VGY DG+Y+LNP QL S LDL+VA
Sbjct: 123 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE+A++ VESE++QL E+I+L A+++GHE+M+IAINAI++LV++ G+ + +W K++
Sbjct: 183 GTERAVLMVESEAQQLSEEIMLGAVVYGHEQMQIAINAIHDLVRDGGKPEWDWQAAPKNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
L++K+ + ++ AYQ++ K R K + K + + L + + D +++ IL++
Sbjct: 243 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVAAKLAE-AGVEADGVEVDNILFE 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
LESKI+R QIL+ RID R +RPI IR+ +LPR HGSSLFTRG+TQALVVA LGT
Sbjct: 302 LESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVAALGTK 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
DEQ IDAL GE+ D FMLHYNMPPFATG+ GR+G PKRRE+GHGRLAKRAL+PVLP +
Sbjct: 362 SDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPPAD 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IRLVSEITESNGSSSMASVCGG LAL+DAGVPI HVAG+AMGLI + K +L+
Sbjct: 422 EFGYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPIKAHVAGVAMGLILEDNKFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT GITALQMDIK+ GIT +I+Q+AL +AK+G +IL KM+
Sbjct: 482 DILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQA 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + ELS+ APR+IT+KI+P KIRDVIGKGGSTI+ LT+ETG IDI ++G ITIAS
Sbjct: 542 AMGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIGEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+S EAKRRIE +T ++GK+Y G VL+L DFGAI+ IL GKDGLLHIS+I+++RV
Sbjct: 602 TSSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANERV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
N ++D++KE Q VRVK+L D++GR++LS+
Sbjct: 662 NQVSDYVKEGQAVRVKLLSTDEKGRMRLSI 691
>sp|Q3SKX5|PNP_THIDA Polyribonucleotide nucleotidyltransferase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=pnp PE=3 SV=1
Length = 706
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/686 (58%), Positives = 528/686 (76%), Gaps = 1/686 (0%)
Query: 5 ILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLTVDYI 64
I K+F YG +++++E GEIARQA+ +V+V+++DT++L TVV+ + +FFPLTVDY
Sbjct: 4 IKKTFTYGRHQVTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTVDYQ 63
Query: 65 EKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQI 124
EK YAAGRIPG F KRE +PSE ET+ISRLIDRPIRPLFPEG+ NE+QI+ V+S NP++
Sbjct: 64 EKTYAAGRIPGGFLKRESRPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSNPEV 123
Query: 125 DPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVAGTEK 184
DI ++IG S ALS+S LPF GP+G A+VG+I+G+Y+LNPT +LK S LDL+VAGTE
Sbjct: 124 SADIPALIGASAALSLSGLPFDGPVGAARVGFINGEYVLNPTNAELKDSALDLVVAGTES 183
Query: 185 AIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDKTLIS 244
A++ VESE+ +LPEDI+L A++FGH +M+ AINAINEL G +W P +D ++
Sbjct: 184 AVLMVESEAMELPEDIMLGAVVFGHTQMQAAINAINELADEAGADAWDWAPPAEDTAMVD 243
Query: 245 KIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYDLESK 304
++ ++E +++AY IK K+ R + ++ LI + T+ N + + LE+
Sbjct: 244 RLKALAEDGLQQAYNIKQKRARMAAVDEVRSKAFAELITADMDTVAANHVKDAFHRLEAG 303
Query: 305 IIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTSRDEQ 364
++R +IL RID R +RPI+IRTG+LPR HGS+LFTRG+TQALVV TLGT RDEQ
Sbjct: 304 VVRNRILSGQPRIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQ 363
Query: 365 KIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNNKFNY 424
IDAL G ++D FMLHYNMPP+ATG+ GR+G PKRREIGHGRLAKRALL VLP+ +F Y
Sbjct: 364 TIDALEGSYSDRFMLHYNMPPYATGETGRVGSPKRREIGHGRLAKRALLAVLPSKEEFGY 423
Query: 425 SIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILSDILG 484
++R+VSEITESNGSSSMASVCGGCL+L+DAG P+ HVAGIAMGLIK+G + +L+DILG
Sbjct: 424 TMRVVSEITESNGSSSMASVCGGCLSLMDAGAPLKAHVAGIAMGLIKEGNRFAVLTDILG 483
Query: 485 DEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKTEVPK 544
DED GDMDFKVAGT NG+TALQMDIKI GIT +I+Q AL +AK+G +IL MK V +
Sbjct: 484 DEDHLGDMDFKVAGTENGVTALQMDIKITGITKEIMQAALTQAKEGRMHILGIMKASVSE 543
Query: 545 CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIASFNSV 604
+E+S +APR+I +KI+P KIRDVIGKGG+ IR LTEETGTQIDI ++G + IA +
Sbjct: 544 T-HEMSAYAPRIIAMKINPEKIRDVIGKGGAVIRALTEETGTQIDIQEDGSVKIACTSME 602
Query: 605 SGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRVNIIT 664
+G+ AK+RIE++T V++GKVY G V++L DFGAI+ +L G+DGLLHISQI+ +RVN I
Sbjct: 603 AGELAKKRIEEITAEVEVGKVYEGPVIKLLDFGAIVNVLPGRDGLLHISQIAHERVNTIG 662
Query: 665 DFLKENQKVRVKVLGIDDRGRIKLSM 690
D+LKE Q VRVK+L D++GR++LSM
Sbjct: 663 DYLKEGQVVRVKILEADEKGRLRLSM 688
>sp|B1Y823|PNP_LEPCP Polyribonucleotide nucleotidyltransferase OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=pnp PE=3 SV=1
Length = 767
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/690 (59%), Positives = 534/690 (77%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+F + K+F++G + +++E GEI+RQA +V+V+I+DTV+LATVV K+ +FFPLT
Sbjct: 3 LFNKVTKTFQWGQHTVTLETGEISRQAGGAVIVNIDDTVVLATVVGAKNAKPGQDFFPLT 62
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAG+IPGSFFKRE KPSE E + SRLIDRP+RPLFPEG+ NE+ +VV+VLS+
Sbjct: 63 VDYIEKTYAAGKIPGSFFKREAKPSELEVLTSRLIDRPLRPLFPEGFYNEVHVVVHVLSL 122
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+ DIA++IG S AL+IS +PF GP+G A+VGY++G+Y+LNP QLK S +DL+VA
Sbjct: 123 NPEASADIAALIGSSAALAISGIPFNGPVGAARVGYVNGEYVLNPGPTQLKSSKMDLVVA 182
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE+ QL E+++L A+++GHE+ K+AI AINELV++ G+ +W P +++
Sbjct: 183 GTEAAVLMVESEADQLTEEVMLGAVVYGHEQAKVAIAAINELVRDAGKPAWDWQPPARNE 242
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
LI+K+ KI AYQI+NKQ R + ++ SL + + D D++ +L++
Sbjct: 243 PLIAKVAEFGLAKIEAAYQIRNKQARTHACRAAYAEVKISLAEA-GVVFDNVDVDNLLFE 301
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
LE+K +R QIL RID R +RPI IRTG+LPRTHGS+LFTRG+TQALVVATLGT
Sbjct: 302 LEAKTVRGQILQGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTD 361
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
+D Q+IDAL G+F DSF+ HYNMPPFATG++GR+G KRRE GHGRLAKRAL+P+LP +
Sbjct: 362 QDSQRIDALAGDFRDSFLFHYNMPPFATGEVGRMGTTKRRETGHGRLAKRALVPLLPPKD 421
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IR+VSEITESNGSSSMASVCGGCLA++DAGVP+ HVAGIAMGLIK+G + +L+
Sbjct: 422 EFGYTIRVVSEITESNGSSSMASVCGGCLAMMDAGVPMKAHVAGIAMGLIKEGNRFAVLT 481
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT G+TALQMDIKI GIT +I+Q+AL +AK+ +IL KM
Sbjct: 482 DILGDEDHLGDMDFKVAGTTAGVTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMVE 541
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ E+S FAPRL T+KI+P KIRDVIGKGGS IR LTEETG QIDI ++G ITIAS
Sbjct: 542 AMGTANTEVSNFAPRLYTMKINPEKIRDVIGKGGSVIRALTEETGCQIDIGEDGTITIAS 601
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
++ + AK+RI +T +IGKVY G V+++ DFGA+I IL GKDGLLHISQI+ +RV
Sbjct: 602 TDADKAELAKKRIADITAEAEIGKVYEGPVVKILDFGALINILPGKDGLLHISQIAHQRV 661
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+TDFL E Q V+VKVL D++GRIKLSM
Sbjct: 662 EKVTDFLTEGQVVKVKVLETDEKGRIKLSM 691
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,903,615
Number of Sequences: 539616
Number of extensions: 10651327
Number of successful extensions: 37074
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 501
Number of HSP's that attempted gapping in prelim test: 33050
Number of HSP's gapped (non-prelim): 1856
length of query: 692
length of database: 191,569,459
effective HSP length: 125
effective length of query: 567
effective length of database: 124,117,459
effective search space: 70374599253
effective search space used: 70374599253
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)