Query psy3758
Match_columns 202
No_of_seqs 122 out of 1303
Neff 10.4
Searched_HMMs 46136
Date Sat Aug 17 00:48:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 100.0 2.6E-42 5.6E-47 253.1 21.9 197 1-201 11-208 (211)
2 KOG0406|consensus 100.0 6E-38 1.3E-42 225.2 19.8 197 1-200 10-216 (231)
3 PLN02473 glutathione S-transfe 100.0 4.5E-38 9.8E-43 231.3 19.3 195 1-195 3-211 (214)
4 PRK15113 glutathione S-transfe 100.0 4.2E-37 9E-42 226.0 18.5 192 1-198 6-211 (214)
5 PRK10542 glutathionine S-trans 100.0 2.7E-37 5.8E-42 225.1 17.3 192 1-196 1-198 (201)
6 PRK10357 putative glutathione 100.0 2.2E-36 4.9E-41 220.4 20.8 194 1-195 1-200 (202)
7 TIGR01262 maiA maleylacetoacet 100.0 1.9E-36 4.1E-41 222.1 19.3 195 2-197 1-206 (210)
8 PRK13972 GSH-dependent disulfi 100.0 7.4E-37 1.6E-41 224.9 16.0 192 1-196 2-206 (215)
9 COG0625 Gst Glutathione S-tran 100.0 4E-36 8.6E-41 220.5 19.5 189 1-190 1-199 (211)
10 PLN02395 glutathione S-transfe 100.0 5.1E-36 1.1E-40 220.5 18.7 195 1-196 3-211 (215)
11 PRK11752 putative S-transferas 100.0 1.6E-34 3.5E-39 217.9 19.7 193 1-196 45-259 (264)
12 TIGR00862 O-ClC intracellular 100.0 2.8E-34 6.1E-39 211.2 20.0 184 6-200 16-225 (236)
13 KOG0868|consensus 100.0 2.8E-35 6.1E-40 199.4 12.9 195 2-197 7-209 (217)
14 PTZ00057 glutathione s-transfe 100.0 1.9E-33 4.2E-38 205.2 18.3 190 1-200 5-204 (205)
15 PLN02378 glutathione S-transfe 100.0 3E-33 6.4E-38 205.2 18.6 182 5-200 16-204 (213)
16 PLN02817 glutathione dehydroge 100.0 5.3E-32 1.1E-36 203.2 18.8 181 6-200 70-256 (265)
17 PRK10387 glutaredoxin 2; Provi 100.0 2.8E-32 6E-37 200.0 16.4 183 1-190 1-208 (210)
18 KOG0867|consensus 100.0 8.4E-32 1.8E-36 198.4 15.4 196 1-196 3-210 (226)
19 KOG1695|consensus 100.0 3.3E-31 7.1E-36 189.3 16.8 195 1-198 4-203 (206)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 8.6E-30 1.9E-34 186.3 16.2 181 2-190 1-207 (209)
21 KOG4420|consensus 99.9 8.3E-27 1.8E-31 167.2 11.6 198 1-198 27-290 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 2.2E-24 4.8E-29 180.2 16.1 154 1-188 3-159 (722)
23 KOG1422|consensus 99.9 1.4E-23 3.1E-28 146.5 15.2 185 6-200 18-210 (221)
24 PF13417 GST_N_3: Glutathione 99.9 4E-22 8.6E-27 122.3 7.9 74 3-76 1-74 (75)
25 cd03052 GST_N_GDAP1 GST_N fami 99.9 3.4E-21 7.3E-26 117.2 8.4 70 1-70 1-73 (73)
26 cd03059 GST_N_SspA GST_N famil 99.9 4.6E-21 1E-25 117.1 9.0 73 1-73 1-73 (73)
27 cd03058 GST_N_Tau GST_N family 99.8 8.9E-21 1.9E-25 116.1 8.8 73 1-73 1-74 (74)
28 cd03061 GST_N_CLIC GST_N famil 99.8 8.9E-21 1.9E-25 118.6 8.6 70 7-76 20-89 (91)
29 cd03045 GST_N_Delta_Epsilon GS 99.8 3.5E-20 7.5E-25 113.5 8.5 71 1-71 1-74 (74)
30 cd03041 GST_N_2GST_N GST_N fam 99.8 3E-20 6.5E-25 114.5 8.0 73 1-73 2-77 (77)
31 cd03076 GST_N_Pi GST_N family, 99.8 2.2E-20 4.8E-25 113.9 6.9 71 1-71 2-72 (73)
32 cd03053 GST_N_Phi GST_N family 99.8 9E-20 1.9E-24 112.2 8.5 72 1-72 2-76 (76)
33 cd03050 GST_N_Theta GST_N fami 99.8 1.3E-19 2.8E-24 111.5 9.0 73 1-73 1-76 (76)
34 cd03060 GST_N_Omega_like GST_N 99.8 9.4E-20 2E-24 110.6 8.2 69 1-69 1-70 (71)
35 KOG3029|consensus 99.8 4.4E-19 9.6E-24 129.1 11.8 183 1-186 91-355 (370)
36 cd03056 GST_N_4 GST_N family, 99.8 2.1E-19 4.6E-24 109.7 8.3 70 1-70 1-73 (73)
37 cd03049 GST_N_3 GST_N family, 99.8 1.9E-19 4.2E-24 109.8 7.7 70 1-70 1-73 (73)
38 cd03039 GST_N_Sigma_like GST_N 99.8 1.3E-19 2.9E-24 110.2 6.8 71 1-71 1-72 (72)
39 cd03048 GST_N_Ure2p_like GST_N 99.8 2.7E-19 5.9E-24 111.4 8.3 73 1-74 2-80 (81)
40 COG2999 GrxB Glutaredoxin 2 [P 99.8 8.5E-19 1.8E-23 119.4 10.8 183 1-191 1-209 (215)
41 cd03044 GST_N_EF1Bgamma GST_N 99.8 3.3E-19 7.2E-24 109.3 7.8 70 2-71 2-74 (75)
42 cd03047 GST_N_2 GST_N family, 99.8 5.2E-19 1.1E-23 107.9 8.3 70 1-70 1-73 (73)
43 cd03042 GST_N_Zeta GST_N famil 99.8 5.2E-19 1.1E-23 107.9 8.2 70 1-70 1-73 (73)
44 cd03046 GST_N_GTT1_like GST_N 99.8 6.6E-19 1.4E-23 108.3 8.6 73 1-74 1-76 (76)
45 cd03055 GST_N_Omega GST_N fami 99.8 4.1E-19 8.8E-24 112.4 7.8 70 1-70 19-89 (89)
46 cd03057 GST_N_Beta GST_N famil 99.8 6.2E-19 1.3E-23 108.7 8.4 73 1-74 1-77 (77)
47 cd03037 GST_N_GRX2 GST_N famil 99.8 4.7E-19 1E-23 107.5 7.7 70 1-71 1-71 (71)
48 cd03051 GST_N_GTT2_like GST_N 99.8 4.4E-19 9.6E-24 108.5 7.5 70 1-70 1-74 (74)
49 PF02798 GST_N: Glutathione S- 99.8 9.7E-19 2.1E-23 107.3 7.7 71 1-71 1-76 (76)
50 cd03075 GST_N_Mu GST_N family, 99.8 4.5E-18 9.7E-23 105.8 7.7 72 2-73 2-82 (82)
51 cd03040 GST_N_mPGES2 GST_N fam 99.8 3.7E-18 7.9E-23 105.2 6.9 71 1-73 2-76 (77)
52 PF13409 GST_N_2: Glutathione 99.7 8.1E-18 1.8E-22 101.5 7.5 65 8-72 1-70 (70)
53 cd03080 GST_N_Metaxin_like GST 99.7 9.9E-18 2.1E-22 102.7 7.9 67 1-74 2-75 (75)
54 cd03077 GST_N_Alpha GST_N fami 99.7 1.7E-17 3.8E-22 102.5 8.0 71 1-74 2-77 (79)
55 cd03038 GST_N_etherase_LigE GS 99.7 1.4E-17 3E-22 104.4 7.6 67 7-74 14-84 (84)
56 cd03186 GST_C_SspA GST_N famil 99.7 1.5E-16 3.3E-21 104.2 11.0 105 84-192 2-106 (107)
57 cd00570 GST_N_family Glutathio 99.7 7.9E-17 1.7E-21 97.2 8.3 70 1-70 1-71 (71)
58 cd03043 GST_N_1 GST_N family, 99.7 9.7E-17 2.1E-21 97.6 8.2 66 5-70 6-73 (73)
59 KOG4244|consensus 99.7 6.1E-16 1.3E-20 112.3 13.4 171 7-186 59-273 (281)
60 cd03182 GST_C_GTT2_like GST_C 99.7 7.9E-16 1.7E-20 102.4 12.3 108 82-189 1-117 (117)
61 cd03196 GST_C_5 GST_C family, 99.7 2.8E-16 6E-21 104.2 9.9 111 81-192 2-114 (115)
62 cd03185 GST_C_Tau GST_C family 99.7 7.2E-16 1.6E-20 103.9 10.9 113 84-200 2-120 (126)
63 cd03054 GST_N_Metaxin GST_N fa 99.7 6E-16 1.3E-20 94.0 8.0 65 1-72 1-72 (72)
64 cd03188 GST_C_Beta GST_C famil 99.7 1.1E-15 2.5E-20 101.1 9.4 108 85-193 2-114 (114)
65 cd03189 GST_C_GTT1_like GST_C 99.6 5E-15 1.1E-19 98.9 11.7 107 80-187 2-119 (119)
66 cd03209 GST_C_Mu GST_C family, 99.6 2.2E-15 4.8E-20 100.9 9.5 111 85-198 2-112 (121)
67 cd03190 GST_C_ECM4_like GST_C 99.6 4.4E-15 9.5E-20 102.1 11.1 110 84-196 3-119 (142)
68 cd03208 GST_C_Alpha GST_C fami 99.6 2.1E-15 4.5E-20 103.0 8.9 113 85-197 3-117 (137)
69 cd03177 GST_C_Delta_Epsilon GS 99.6 2.2E-15 4.8E-20 100.5 8.7 111 85-196 2-113 (118)
70 cd03184 GST_C_Omega GST_C fami 99.6 3.2E-15 6.8E-20 100.6 8.7 110 85-200 2-118 (124)
71 cd03191 GST_C_Zeta GST_C famil 99.6 5.9E-15 1.3E-19 98.8 9.7 111 84-195 2-119 (121)
72 cd03178 GST_C_Ure2p_like GST_C 99.6 1.4E-15 3E-20 100.6 6.0 110 85-194 1-113 (113)
73 cd03198 GST_C_CLIC GST_C famil 99.6 7.2E-15 1.6E-19 98.8 9.3 99 99-200 10-129 (134)
74 cd03210 GST_C_Pi GST_C family, 99.6 7.8E-15 1.7E-19 98.9 9.4 110 85-198 3-115 (126)
75 cd03187 GST_C_Phi GST_C family 99.6 9.2E-15 2E-19 97.3 9.3 109 85-193 2-118 (118)
76 COG0435 ECM4 Predicted glutath 99.6 1.1E-14 2.3E-19 106.3 10.1 188 2-194 53-285 (324)
77 cd03181 GST_C_EFB1gamma GST_C 99.6 7.5E-15 1.6E-19 98.5 8.8 115 85-199 1-120 (123)
78 cd03183 GST_C_Theta GST_C fami 99.6 1.2E-14 2.6E-19 98.0 8.9 108 86-193 2-120 (126)
79 cd03180 GST_C_2 GST_C family, 99.6 4.4E-14 9.5E-19 92.9 10.8 104 85-189 2-110 (110)
80 cd03201 GST_C_DHAR GST_C famil 99.6 4.6E-14 1E-18 94.3 10.2 82 120-201 29-116 (121)
81 cd03203 GST_C_Lambda GST_C fam 99.6 1.4E-13 3.1E-18 91.9 12.1 107 82-200 1-116 (120)
82 PF00043 GST_C: Glutathione S- 99.5 2.9E-14 6.4E-19 91.3 7.6 73 115-187 22-95 (95)
83 cd03195 GST_C_4 GST_C family, 99.5 7.3E-14 1.6E-18 92.5 8.5 107 84-194 2-112 (114)
84 KOG2903|consensus 99.5 2.8E-14 6.1E-19 103.2 6.7 187 3-194 40-287 (319)
85 cd03200 GST_C_JTV1 GST_C famil 99.5 1.5E-13 3.3E-18 87.9 8.2 96 66-186 1-96 (96)
86 cd03207 GST_C_8 GST_C family, 99.5 3.5E-14 7.6E-19 92.3 5.1 77 117-195 26-102 (103)
87 KOG3027|consensus 99.5 2.6E-12 5.6E-17 90.0 14.3 168 11-186 36-248 (257)
88 cd03206 GST_C_7 GST_C family, 99.5 1.8E-13 3.8E-18 88.5 6.7 71 118-189 30-100 (100)
89 cd03204 GST_C_GDAP1 GST_C fami 99.5 4.7E-13 1E-17 87.3 7.9 75 115-189 23-111 (111)
90 cd03079 GST_N_Metaxin2 GST_N f 99.5 4.9E-13 1.1E-17 80.5 7.4 60 7-72 15-74 (74)
91 PF13410 GST_C_2: Glutathione 99.4 6.6E-13 1.4E-17 79.8 6.6 66 117-182 2-69 (69)
92 cd03194 GST_C_3 GST_C family, 99.4 1.7E-12 3.8E-17 85.8 9.1 73 118-194 41-113 (114)
93 cd03179 GST_C_1 GST_C family, 99.4 5.2E-13 1.1E-17 87.0 6.3 99 85-184 2-105 (105)
94 cd03192 GST_C_Sigma_like GST_C 99.4 5.3E-12 1.1E-16 82.1 9.3 99 85-183 2-104 (104)
95 TIGR02190 GlrX-dom Glutaredoxi 99.4 3.6E-12 7.7E-17 78.7 7.0 70 1-70 10-79 (79)
96 cd03202 GST_C_etherase_LigE GS 99.3 1.8E-11 4E-16 82.2 7.0 68 119-186 56-124 (124)
97 cd00299 GST_C_family Glutathio 99.2 2.5E-11 5.3E-16 78.0 5.9 69 115-183 30-100 (100)
98 PF14497 GST_C_3: Glutathione 99.2 3.7E-11 8E-16 77.5 6.1 67 117-185 31-99 (99)
99 cd03029 GRX_hybridPRX5 Glutare 99.2 9E-11 2E-15 71.1 7.4 70 1-70 3-72 (72)
100 PRK10638 glutaredoxin 3; Provi 99.2 8.9E-11 1.9E-15 73.1 7.3 71 1-71 4-75 (83)
101 cd03193 GST_C_Metaxin GST_C fa 99.2 1.1E-10 2.3E-15 73.6 7.0 65 120-184 18-88 (88)
102 KOG3028|consensus 99.1 5.1E-08 1.1E-12 73.1 18.0 173 7-186 15-234 (313)
103 cd03078 GST_N_Metaxin1_like GS 99.0 1.6E-09 3.6E-14 65.5 7.2 59 7-72 14-72 (73)
104 cd03205 GST_C_6 GST_C family, 99.0 2.3E-09 4.9E-14 68.9 8.4 69 112-183 28-98 (98)
105 cd03027 GRX_DEP Glutaredoxin ( 99.0 1.9E-09 4.1E-14 65.4 6.4 67 1-67 3-70 (73)
106 PRK10329 glutaredoxin-like pro 99.0 2E-09 4.3E-14 66.5 6.1 61 1-61 3-63 (81)
107 PF14834 GST_C_4: Glutathione 99.0 6.5E-09 1.4E-13 66.7 8.5 108 82-195 1-114 (117)
108 cd02066 GRX_family Glutaredoxi 98.9 4.1E-09 8.9E-14 63.4 6.8 68 1-68 2-70 (72)
109 cd03197 GST_C_mPGES2 GST_C fam 98.9 5.7E-09 1.2E-13 71.1 6.9 64 122-185 80-145 (149)
110 TIGR02196 GlrX_YruB Glutaredox 98.9 6.4E-09 1.4E-13 62.9 6.6 69 1-69 2-73 (74)
111 cd03212 GST_C_Metaxin1_3 GST_C 98.9 4.2E-09 9.2E-14 71.8 6.1 70 116-185 59-134 (137)
112 cd02976 NrdH NrdH-redoxin (Nrd 98.9 5.3E-09 1.1E-13 63.1 5.8 62 1-62 2-64 (73)
113 cd03211 GST_C_Metaxin2 GST_C f 98.9 3.8E-09 8.3E-14 71.0 4.8 68 117-184 53-126 (126)
114 cd03418 GRX_GRXb_1_3_like Glut 98.9 1.6E-08 3.4E-13 61.6 7.0 70 1-70 2-73 (75)
115 TIGR02194 GlrX_NrdH Glutaredox 98.8 1.2E-08 2.7E-13 61.6 5.7 57 1-57 1-57 (72)
116 TIGR02200 GlrX_actino Glutared 98.8 1.4E-08 2.9E-13 62.1 5.8 69 1-69 2-75 (77)
117 TIGR02181 GRX_bact Glutaredoxi 98.8 2.9E-08 6.3E-13 61.1 7.3 71 1-71 1-72 (79)
118 COG0695 GrxC Glutaredoxin and 98.8 3.5E-08 7.5E-13 60.8 7.1 69 1-69 3-74 (80)
119 TIGR02183 GRXA Glutaredoxin, G 98.7 7E-08 1.5E-12 60.4 7.3 74 1-74 2-83 (86)
120 PF00462 Glutaredoxin: Glutare 98.7 1.6E-08 3.4E-13 58.8 4.0 59 1-59 1-60 (60)
121 PRK11200 grxA glutaredoxin 1; 98.7 9.4E-08 2E-12 59.7 7.3 74 1-74 3-84 (85)
122 cd03419 GRX_GRXh_1_2_like Glut 98.6 4.6E-07 1E-11 56.0 7.8 71 1-71 2-76 (82)
123 TIGR02189 GlrX-like_plant Glut 98.6 6E-07 1.3E-11 57.6 8.2 69 1-69 10-82 (99)
124 PHA03050 glutaredoxin; Provisi 98.5 6.3E-07 1.4E-11 58.4 7.7 67 1-67 15-88 (108)
125 TIGR02180 GRX_euk Glutaredoxin 98.4 2.4E-06 5.3E-11 52.9 8.5 71 1-71 1-77 (84)
126 TIGR00365 monothiol glutaredox 98.3 4.6E-06 9.9E-11 53.3 6.9 63 7-69 25-88 (97)
127 cd03028 GRX_PICOT_like Glutare 98.3 6.1E-06 1.3E-10 52.0 6.9 64 7-70 21-85 (90)
128 PF10568 Tom37: Outer mitochon 98.1 3.3E-05 7.1E-10 46.4 7.0 56 7-69 12-71 (72)
129 cd03031 GRX_GRX_like Glutaredo 97.9 5.5E-05 1.2E-09 51.9 6.9 70 1-70 2-82 (147)
130 PF04399 Glutaredoxin2_C: Glut 97.9 4.2E-05 9.2E-10 51.3 5.5 68 119-190 57-125 (132)
131 PRK12759 bifunctional gluaredo 97.8 7.3E-05 1.6E-09 60.2 7.5 67 1-67 4-79 (410)
132 cd03199 GST_C_GRX2 GST_C famil 97.6 0.00027 5.9E-09 47.1 6.0 66 120-189 59-125 (128)
133 PRK10824 glutaredoxin-4; Provi 97.6 0.00044 9.5E-09 45.4 6.9 64 7-70 28-92 (115)
134 KOG1752|consensus 97.6 0.00087 1.9E-08 43.1 8.0 70 2-71 17-90 (104)
135 cd03036 ArsC_like Arsenate Red 97.4 0.00035 7.6E-09 45.8 4.7 34 1-34 1-34 (111)
136 cd02977 ArsC_family Arsenate R 97.3 0.00054 1.2E-08 44.4 5.0 33 1-33 1-33 (105)
137 cd02973 TRX_GRX_like Thioredox 97.3 0.00098 2.1E-08 39.2 5.7 57 1-60 3-64 (67)
138 PTZ00062 glutaredoxin; Provisi 97.1 0.0025 5.5E-08 46.3 7.0 63 7-69 126-189 (204)
139 PRK01655 spxA transcriptional 97.1 0.00099 2.2E-08 45.0 4.3 34 1-34 2-35 (131)
140 cd03032 ArsC_Spx Arsenate Redu 97.1 0.0012 2.6E-08 43.5 4.5 34 1-34 2-35 (115)
141 COG4545 Glutaredoxin-related p 97.0 0.0029 6.2E-08 37.5 5.2 59 2-60 5-77 (85)
142 TIGR01617 arsC_related transcr 97.0 0.0015 3.2E-08 43.2 4.6 33 1-33 1-33 (117)
143 cd03035 ArsC_Yffb Arsenate Red 96.9 0.0025 5.5E-08 41.3 5.0 35 1-35 1-35 (105)
144 KOG1147|consensus 96.9 0.00029 6.3E-09 57.2 0.5 105 54-181 43-150 (712)
145 PRK12559 transcriptional regul 96.8 0.0026 5.6E-08 43.0 4.6 35 1-35 2-36 (131)
146 PRK13344 spxA transcriptional 96.8 0.0029 6.3E-08 42.8 4.8 34 1-34 2-35 (132)
147 cd03030 GRX_SH3BGR Glutaredoxi 96.8 0.0088 1.9E-07 37.7 6.6 67 1-67 2-79 (92)
148 cd03033 ArsC_15kD Arsenate Red 96.7 0.0033 7.2E-08 41.3 4.5 34 1-34 2-35 (113)
149 PF05768 DUF836: Glutaredoxin- 96.4 0.015 3.3E-07 35.6 5.6 54 1-56 2-57 (81)
150 cd01659 TRX_superfamily Thiore 96.1 0.017 3.6E-07 32.5 4.8 53 1-53 1-58 (69)
151 COG1393 ArsC Arsenate reductas 96.1 0.014 3.1E-07 38.5 4.7 33 1-33 3-35 (117)
152 TIGR01616 nitro_assoc nitrogen 96.0 0.016 3.5E-07 38.8 4.6 33 1-33 3-35 (126)
153 TIGR00412 redox_disulf_2 small 95.9 0.053 1.1E-06 32.7 6.4 53 2-59 4-60 (76)
154 TIGR00014 arsC arsenate reduct 95.8 0.026 5.7E-07 37.1 4.9 34 1-34 1-34 (114)
155 PRK10026 arsenate reductase; P 95.7 0.023 5E-07 38.8 4.5 34 1-34 4-37 (141)
156 cd03034 ArsC_ArsC Arsenate Red 95.7 0.031 6.7E-07 36.6 5.0 33 1-33 1-33 (112)
157 PRK10853 putative reductase; P 95.7 0.027 5.8E-07 37.3 4.6 33 1-33 2-34 (118)
158 TIGR00411 redox_disulf_1 small 95.6 0.063 1.4E-06 32.6 5.8 56 1-57 3-62 (82)
159 cd03026 AhpF_NTD_C TRX-GRX-lik 95.0 0.1 2.2E-06 32.6 5.5 57 1-60 16-77 (89)
160 PHA02125 thioredoxin-like prot 95.0 0.093 2E-06 31.5 5.1 51 1-54 2-52 (75)
161 COG0278 Glutaredoxin-related p 94.8 0.19 4E-06 31.9 6.0 67 5-71 26-94 (105)
162 PF11287 DUF3088: Protein of u 94.7 0.17 3.6E-06 32.8 5.8 67 8-74 23-108 (112)
163 PF13192 Thioredoxin_3: Thiore 94.6 0.28 6E-06 29.5 6.5 56 2-62 4-63 (76)
164 PF11801 Tom37_C: Tom37 C-term 92.3 0.46 1E-05 33.5 5.4 51 125-179 112-166 (168)
165 PF04908 SH3BGR: SH3-binding, 91.6 0.79 1.7E-05 29.3 5.4 67 1-67 3-85 (99)
166 PF03960 ArsC: ArsC family; I 89.8 0.58 1.3E-05 30.4 3.7 30 4-33 1-30 (110)
167 PF00085 Thioredoxin: Thioredo 85.9 6.3 0.00014 24.5 8.1 68 2-71 22-102 (103)
168 TIGR01295 PedC_BrcD bacterioci 85.5 4.3 9.4E-05 26.9 5.9 55 3-57 29-101 (122)
169 cd02947 TRX_family TRX family; 85.4 5.4 0.00012 23.8 6.2 53 2-57 15-74 (93)
170 cd02949 TRX_NTR TRX domain, no 82.9 6.6 0.00014 24.5 5.8 57 2-59 18-80 (97)
171 PRK15317 alkyl hydroperoxide r 82.5 1.3 2.7E-05 37.3 2.9 71 1-72 120-197 (517)
172 TIGR03143 AhpF_homolog putativ 81.7 4 8.7E-05 34.7 5.6 56 1-59 480-540 (555)
173 cd02953 DsbDgamma DsbD gamma f 81.3 4.5 9.7E-05 25.6 4.6 51 2-53 16-77 (104)
174 TIGR03140 AhpF alkyl hydropero 81.1 1.2 2.6E-05 37.4 2.3 60 1-61 121-183 (515)
175 KOG0911|consensus 79.8 7.1 0.00015 28.8 5.5 66 5-70 150-216 (227)
176 cd02984 TRX_PICOT TRX domain, 78.3 13 0.00028 22.9 6.4 56 2-58 19-80 (97)
177 cd02975 PfPDO_like_N Pyrococcu 78.1 8.4 0.00018 25.0 5.2 48 5-53 30-80 (113)
178 PF09635 MetRS-N: MetRS-N bind 75.5 2.1 4.6E-05 28.3 1.7 27 48-74 35-63 (122)
179 cd02989 Phd_like_TxnDC9 Phosdu 74.1 18 0.0004 23.4 6.0 58 2-60 27-89 (113)
180 cd02951 SoxW SoxW family; SoxW 70.0 16 0.00036 23.9 5.2 16 2-17 19-34 (125)
181 cd02963 TRX_DnaJ TRX domain, D 66.0 32 0.0007 22.0 6.0 55 2-57 29-90 (111)
182 TIGR02681 phage_pRha phage reg 64.8 8.1 0.00017 25.1 2.7 26 49-74 2-28 (108)
183 PTZ00051 thioredoxin; Provisio 64.1 31 0.00068 21.2 5.7 56 2-58 23-83 (98)
184 KOG3425|consensus 63.4 36 0.00078 22.6 5.4 68 5-72 41-122 (128)
185 cd02993 PDI_a_APS_reductase PD 62.5 34 0.00074 21.8 5.4 52 2-53 26-83 (109)
186 PHA02278 thioredoxin-like prot 61.9 39 0.00085 21.6 6.5 56 4-59 21-85 (103)
187 TIGR02187 GlrX_arch Glutaredox 61.7 22 0.00048 26.0 4.9 53 1-54 137-192 (215)
188 cd02957 Phd_like Phosducin (Ph 61.4 26 0.00057 22.5 4.7 57 2-60 29-90 (113)
189 PF12290 DUF3802: Protein of u 59.3 21 0.00045 23.2 3.7 88 63-156 9-96 (113)
190 KOG1668|consensus 59.2 5.1 0.00011 29.6 1.1 58 127-189 10-67 (231)
191 cd02962 TMX2 TMX2 family; comp 58.9 54 0.0012 22.7 6.1 58 2-60 52-122 (152)
192 TIGR02187 GlrX_arch Glutaredox 58.0 48 0.001 24.3 6.1 55 2-57 24-88 (215)
193 COG3019 Predicted metal-bindin 56.4 20 0.00043 24.5 3.4 70 1-73 28-104 (149)
194 cd02959 ERp19 Endoplasmic reti 56.1 51 0.0011 21.5 5.4 56 3-59 25-90 (117)
195 cd02948 TRX_NDPK TRX domain, T 55.9 49 0.0011 20.8 7.3 53 3-57 23-82 (102)
196 PRK09381 trxA thioredoxin; Pro 55.4 50 0.0011 20.8 6.4 57 2-59 26-88 (109)
197 cd02956 ybbN ybbN protein fami 53.3 39 0.00085 20.7 4.4 55 3-58 18-78 (96)
198 COG3150 Predicted esterase [Ge 53.0 14 0.00031 26.2 2.4 32 2-33 4-35 (191)
199 PF00731 AIRC: AIR carboxylase 52.7 22 0.00048 24.6 3.3 35 7-41 11-45 (150)
200 cd02987 Phd_like_Phd Phosducin 50.6 88 0.0019 22.2 6.5 57 3-61 89-150 (175)
201 cd02997 PDI_a_PDIR PDIa family 49.5 61 0.0013 20.0 6.0 56 2-57 22-86 (104)
202 cd02955 SSP411 TRX domain, SSP 48.8 78 0.0017 21.0 6.0 60 3-62 21-97 (124)
203 TIGR01068 thioredoxin thioredo 48.6 34 0.00073 20.9 3.6 54 3-57 20-79 (101)
204 cd04911 ACT_AKiii-YclM-BS_1 AC 48.5 23 0.0005 21.4 2.5 26 9-34 15-40 (76)
205 cd02985 TRX_CDSP32 TRX family, 48.0 68 0.0015 20.1 5.8 56 3-58 21-83 (103)
206 cd02952 TRP14_like Human TRX-r 47.6 80 0.0017 20.8 5.9 55 7-61 38-105 (119)
207 cd03003 PDI_a_ERdj5_N PDIa fam 47.6 67 0.0014 19.9 5.4 54 2-57 23-83 (101)
208 cd02999 PDI_a_ERp44_like PDIa 47.1 69 0.0015 20.1 4.8 53 2-56 23-82 (100)
209 PF13728 TraF: F plasmid trans 46.9 74 0.0016 23.5 5.5 32 2-33 125-160 (215)
210 PF09413 DUF2007: Domain of un 46.8 17 0.00038 20.9 1.9 32 2-33 2-33 (67)
211 TIGR01162 purE phosphoribosyla 46.6 37 0.0008 23.7 3.7 36 7-42 9-44 (156)
212 COG5515 Uncharacterized conser 46.5 21 0.00046 20.4 2.0 21 1-21 3-27 (70)
213 KOG2824|consensus 45.5 42 0.00091 25.7 4.0 59 11-69 149-212 (281)
214 PF01923 Cob_adeno_trans: Coba 45.4 1E+02 0.0023 21.5 7.2 93 93-185 55-153 (163)
215 PF06110 DUF953: Eukaryotic pr 45.1 13 0.00029 24.6 1.3 58 5-62 34-105 (119)
216 PF04134 DUF393: Protein of un 44.1 80 0.0017 20.2 4.9 69 3-72 1-77 (114)
217 cd02950 TxlA TRX-like protein 43.4 1E+02 0.0022 20.9 5.8 52 2-53 25-81 (142)
218 cd02961 PDI_a_family Protein D 41.3 79 0.0017 18.9 5.5 51 2-53 20-76 (101)
219 PTZ00443 Thioredoxin domain-co 40.0 1.6E+02 0.0034 22.0 9.3 71 2-74 57-140 (224)
220 PF15608 PELOTA_1: PELOTA RNA 39.7 57 0.0012 20.9 3.4 28 3-30 60-87 (100)
221 TIGR00636 PduO_Nterm ATP:cob(I 39.0 1.4E+02 0.0031 21.2 7.8 69 117-185 76-150 (171)
222 PF13098 Thioredoxin_2: Thiore 39.0 27 0.00058 22.1 2.0 33 2-34 10-49 (112)
223 PRK10996 thioredoxin 2; Provis 38.9 1.2E+02 0.0026 20.4 6.8 56 2-58 57-118 (139)
224 cd02998 PDI_a_ERp38 PDIa famil 37.8 97 0.0021 19.0 4.5 52 2-53 23-80 (105)
225 cd03006 PDI_a_EFP1_N PDIa fami 37.7 71 0.0015 20.8 3.9 51 2-53 34-89 (113)
226 PRK09266 hypothetical protein; 37.2 60 0.0013 24.6 4.0 56 18-73 200-258 (266)
227 TIGR01126 pdi_dom protein disu 35.9 46 0.001 20.4 2.8 51 2-53 18-74 (102)
228 PTZ00102 disulphide isomerase; 35.6 2.4E+02 0.0053 23.2 7.6 72 2-74 54-139 (477)
229 PF12062 HSNSD: heparan sulfat 35.2 78 0.0017 26.4 4.4 50 2-63 64-118 (487)
230 cd02954 DIM1 Dim1 family; Dim1 33.6 1.3E+02 0.0028 19.7 4.5 54 4-58 21-80 (114)
231 cd03004 PDI_a_ERdj5_C PDIa fam 33.1 1.2E+02 0.0026 18.8 4.4 51 2-53 24-78 (104)
232 PHA03075 glutaredoxin-like pro 31.7 72 0.0016 21.1 3.0 65 1-73 5-70 (123)
233 COG0041 PurE Phosphoribosylcar 31.6 80 0.0017 22.0 3.4 31 10-40 16-46 (162)
234 cd02972 DsbA_family DsbA famil 31.0 86 0.0019 18.6 3.4 22 1-22 1-22 (98)
235 PF01323 DSBA: DSBA-like thior 30.7 74 0.0016 22.3 3.4 34 1-34 2-40 (193)
236 PF07511 DUF1525: Protein of u 30.4 65 0.0014 21.2 2.7 26 46-71 81-107 (114)
237 TIGR01130 ER_PDI_fam protein d 30.0 3.1E+02 0.0066 22.4 7.5 72 2-74 23-110 (462)
238 cd02994 PDI_a_TMX PDIa family, 29.4 1.4E+02 0.003 18.3 5.4 51 2-53 21-76 (101)
239 cd03020 DsbA_DsbC_DsbG DsbA fa 28.8 67 0.0015 23.0 2.9 20 2-21 82-101 (197)
240 PF11823 DUF3343: Protein of u 28.3 86 0.0019 18.4 2.9 31 3-33 5-35 (73)
241 PF13344 Hydrolase_6: Haloacid 28.2 59 0.0013 20.6 2.2 66 11-79 18-84 (101)
242 cd02996 PDI_a_ERp44 PDIa famil 28.1 1.6E+02 0.0034 18.4 4.9 55 2-57 23-89 (108)
243 cd02965 HyaE HyaE family; HyaE 27.8 1.2E+02 0.0026 19.8 3.7 56 3-59 33-96 (111)
244 TIGR01764 excise DNA binding d 27.6 97 0.0021 15.8 3.2 25 46-70 24-48 (49)
245 PF14595 Thioredoxin_9: Thiore 27.0 75 0.0016 21.3 2.7 51 2-53 46-102 (129)
246 PF04564 U-box: U-box domain; 25.6 1.5E+02 0.0033 17.4 4.5 27 46-73 13-39 (73)
247 cd03002 PDI_a_MPD1_like PDI fa 24.8 1.8E+02 0.0039 18.0 5.8 56 2-57 23-85 (109)
248 PRK10877 protein disulfide iso 24.4 1.3E+02 0.0029 22.4 3.9 20 2-21 112-131 (232)
249 cd06891 PX_Vps17p The phosphoi 24.3 57 0.0012 22.3 1.7 19 173-191 111-129 (140)
250 PLN02309 5'-adenylylsulfate re 23.8 2.2E+02 0.0049 23.8 5.3 52 2-53 370-427 (457)
251 KOG0743|consensus 23.6 2.3E+02 0.005 23.7 5.2 52 3-54 240-294 (457)
252 KOG0190|consensus 23.6 3.1E+02 0.0066 23.3 6.0 72 2-74 47-133 (493)
253 cd02995 PDI_a_PDI_a'_C PDIa fa 23.4 1.8E+02 0.004 17.6 4.7 50 2-53 23-78 (104)
254 PRK11657 dsbG disulfide isomer 23.1 1.1E+02 0.0024 23.2 3.2 19 2-20 122-140 (251)
255 PF00004 AAA: ATPase family as 22.9 1.5E+02 0.0033 18.9 3.6 30 1-30 1-30 (132)
256 PF05728 UPF0227: Uncharacteri 22.6 1.5E+02 0.0032 21.4 3.6 32 3-34 5-39 (187)
257 PF09314 DUF1972: Domain of un 22.5 81 0.0017 22.7 2.3 20 55-74 154-173 (185)
258 cd03001 PDI_a_P5 PDIa family, 22.4 1.9E+02 0.0042 17.5 5.3 50 2-53 23-77 (103)
259 PRK14476 nitrogenase molybdenu 22.3 4.7E+02 0.01 21.9 7.1 75 63-148 246-320 (455)
260 cd02970 PRX_like2 Peroxiredoxi 22.0 1.3E+02 0.0028 19.9 3.2 51 5-56 32-89 (149)
261 PF07728 AAA_5: AAA domain (dy 21.9 1.9E+02 0.0041 19.0 4.0 39 2-40 3-41 (139)
262 PRK13703 conjugal pilus assemb 21.9 1.4E+02 0.0031 22.6 3.6 32 2-33 148-183 (248)
263 cd03005 PDI_a_ERp46 PDIa famil 21.8 2E+02 0.0043 17.4 5.4 55 2-57 21-84 (102)
264 PF12972 NAGLU_C: Alpha-N-acet 21.6 3.3E+02 0.0071 20.9 5.5 53 113-165 119-182 (267)
265 cd00449 PLPDE_IV PyridoxaL 5'- 21.4 1.4E+02 0.0031 22.2 3.6 54 18-71 196-254 (256)
266 PF05496 RuvB_N: Holliday junc 21.1 3.3E+02 0.0072 20.5 5.2 32 1-32 53-84 (233)
267 COG3118 Thioredoxin domain-con 20.7 3.9E+02 0.0085 21.0 5.7 72 2-74 48-131 (304)
268 PF13961 DUF4219: Domain of un 20.6 65 0.0014 14.9 1.0 20 5-24 3-22 (27)
269 cd03022 DsbA_HCCA_Iso DsbA fam 20.4 1.7E+02 0.0037 20.5 3.7 32 1-32 1-36 (192)
270 cd02988 Phd_like_VIAF Phosduci 20.0 1.1E+02 0.0023 22.1 2.5 55 3-61 108-167 (192)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=2.6e-42 Score=253.09 Aligned_cols=197 Identities=44% Similarity=0.770 Sum_probs=172.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCCCCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS 80 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~l~p 80 (202)
||||+++.||+|++++++|+++|++|+.+.++..+.+++|+++||.|+||+|+++|.+++||.||++||++++|+..++|
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p 90 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMP 90 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCC
Confidence 68999999999999999999999999999999988888999999999999999999999999999999999999888999
Q ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHH
Q psy3758 81 SDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLW 160 (202)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~ 160 (202)
.++.+++.+..|+.++...+......+.. ..+...+.....+.+.|..+|++|++++|++|+++|+||+++++.+.
T Consensus 91 ~~~~~ra~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~ 166 (211)
T PRK09481 91 VYPVARGESRLMMHRIEKDWYSLMNKIVN----GSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLW 166 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHH
Confidence 99999999999998877665544433322 13445667778899999999999998999999999999999999998
Q ss_pred HHhhcCcccC-CCChhHHHHHHHHhcCccccccccchHhhhc
Q psy3758 161 RLDYYGINLS-KSASPLIKYAERIFSRPSYMESLTPAEKIMR 201 (202)
Q Consensus 161 ~~~~~~~~~~-~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~ 201 (202)
+....+.++. +.+|+|++|++++.++|+++++++...+.++
T Consensus 167 ~~~~~~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~~~~ 208 (211)
T PRK09481 167 RLPVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREMR 208 (211)
T ss_pred HHHhcCCCCCCCCChhHHHHHHHHhccHHHHHHcCHHHHHHh
Confidence 8776666654 4689999999999999999999988776554
No 2
>KOG0406|consensus
Probab=100.00 E-value=6e-38 Score=225.19 Aligned_cols=197 Identities=29% Similarity=0.424 Sum_probs=172.2
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhC-CCCCccEEEeCCEEecchHHHHHHHHhcCC-CCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMN-PYGQVPILVERDLILYESNIINEYIDERFP-YPQL 78 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~-p~~~vP~L~~~~~~~~es~aI~~yL~~~~~-~~~l 78 (202)
++||++..|||++|++++|.++||+|+.+..+..++++++++.| +.++||+|++||..|+||..|++|||+.++ +.++
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~i 89 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPI 89 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCC
Confidence 47999999999999999999999999999999999999999999 689999999999999999999999999999 5899
Q ss_pred CCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhc-CCCeeecCCchHHHHHHHH
Q psy3758 79 MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAP 157 (202)
Q Consensus 79 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~fl~G~~~s~aD~~l~~ 157 (202)
+|+||.+|+.++.|.++++..++.....+... ...+..+...+++...|..+|+.|+ +++|+.|++++++|+++++
T Consensus 90 LP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~---~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p 166 (231)
T KOG0406|consen 90 LPSDPYERAQARFWAEYIDKKVFFVGRFVVAA---KGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGP 166 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhh---cCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHh
Confidence 99999999999999999998777666665542 2446667778889999999999998 6899999999999999997
Q ss_pred HHHHHhhc----C---cccCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 158 LLWRLDYY----G---INLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 158 ~l~~~~~~----~---~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
++.+.... + ......+|+|.+|.++|.++++|++++++.+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~ 216 (231)
T KOG0406|consen 167 SFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVV 216 (231)
T ss_pred hHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHH
Confidence 66443322 2 2334668999999999999999999999887654
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=4.5e-38 Score=231.28 Aligned_cols=195 Identities=22% Similarity=0.322 Sum_probs=161.4
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCC-
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP- 76 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~- 76 (202)
||||+++.||++++++++|.++|++|+.+.++.. ..+++++++||.|+||+|++||.+++||.+|++||++.+++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~ 82 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQG 82 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcC
Confidence 6999999999999999999999999999998874 567889999999999999999999999999999999999743
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhhhHHHHHH-----HHHh--cccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCc
Q psy3758 77 -QLMSSDPLMRARARLMLLNFEKEIFIHLY-----MLEN--ERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEF 148 (202)
Q Consensus 77 -~l~p~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~ 148 (202)
++.|.++.+++++..|+.+....+..... .... ..........+....++.+.|+.+|++|++++|++|+++
T Consensus 83 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 162 (214)
T PLN02473 83 TDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDEF 162 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 58899999999999999877655543221 1111 112333455667778899999999999988899999999
Q ss_pred hHHHHHHHHHHHHHhhc-C-cccCCCChhHHHHHHHHhcCccccccccc
Q psy3758 149 SMLDVVIAPLLWRLDYY-G-INLSKSASPLIKYAERIFSRPSYMESLTP 195 (202)
Q Consensus 149 s~aD~~l~~~l~~~~~~-~-~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 195 (202)
|+||+++++.+.+.... . ..+.+.+|+|.+|++++.++|++++++..
T Consensus 163 t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 163 TLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 99999999988765432 1 12346689999999999999999998764
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=4.2e-37 Score=225.97 Aligned_cols=192 Identities=24% Similarity=0.326 Sum_probs=159.4
Q ss_pred CEEecCC--CChhhHHHHHHHHHhCCCcEEEEcCCCC---CchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCC
Q psy3758 1 MVLYSGT--TCPFSQRCRLVLFEKGMDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY 75 (202)
Q Consensus 1 ~~Ly~~~--~s~~~~~v~~~l~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~ 75 (202)
|+||+++ .||+|++++++|.++||+|+.+.++... ..++|+++||.|+||+|++||.+++||.||++||++.+++
T Consensus 6 ~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~~ 85 (214)
T PRK15113 6 ITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAP 85 (214)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcCC
Confidence 5899976 6999999999999999999999998753 5689999999999999999999999999999999999986
Q ss_pred CC---CCCCCHHHHHHHHHHHHHHhhhHHHHHHH-----HHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC-CCeeecC
Q psy3758 76 PQ---LMSSDPLMRARARLMLLNFEKEIFIHLYM-----LENERNKTSIKGYKRAREEIRDRLITLAPLFLK-NKYMLGD 146 (202)
Q Consensus 76 ~~---l~p~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~G~ 146 (202)
+. ++|.++.+++++++|+.++...+...... +.. ....+...+...+.+.+.|+.+|++|++ ++|++|+
T Consensus 86 ~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~ 163 (214)
T PRK15113 86 PAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFA--GAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFGE 163 (214)
T ss_pred CCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhcc--CCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeCC
Confidence 65 89999999999999999887665543211 111 1122334456777889999999999975 5799995
Q ss_pred CchHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccccccccchHh
Q psy3758 147 EFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEK 198 (202)
Q Consensus 147 ~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 198 (202)
+|+||+++++.+.++...+..+ .|+|.+|++|+.++|+|++++++..+
T Consensus 164 -~TlADi~l~~~l~~~~~~~~~~---~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 164 -WCIADTDLALMLNRLVLHGDEV---PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred -ccHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 9999999999998876655443 29999999999999999999987654
No 5
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=2.7e-37 Score=225.14 Aligned_cols=192 Identities=22% Similarity=0.356 Sum_probs=160.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC----CCchhhhhhCCCCCccEEE-eCCEEecchHHHHHHHHhcCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF----NKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPY 75 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~----~~~~~~~~~~p~~~vP~L~-~~~~~~~es~aI~~yL~~~~~~ 75 (202)
|+||+++.| ++++++++|+++||+|+.+.++.. ..+++|+++||.|+||+|+ +||.+|+||.+|++||++.+++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 789999876 699999999999999999999874 2457899999999999998 6889999999999999999987
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHH
Q psy3758 76 PQLM-SSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVV 154 (202)
Q Consensus 76 ~~l~-p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~ 154 (202)
+.++ |.++.+++.+..|+.+....+.+.+...... ...+.......+.+.+.|+.+|+.|++++|++|+++|+||++
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~ 157 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRP--DTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAY 157 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCC--CChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHH
Confidence 7666 5678899999999988776666554443322 122333456678899999999999998899999999999999
Q ss_pred HHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccccccccch
Q psy3758 155 IAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPA 196 (202)
Q Consensus 155 l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 196 (202)
+++.+.+....+..+ +.+|+|.+|++++.++|++++++..+
T Consensus 158 l~~~~~~~~~~~~~~-~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 158 LFTVLRWAYAVKLNL-EGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred HHHHHHHhhccCCCc-ccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 999998876666543 55899999999999999999998653
No 6
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=2.2e-36 Score=220.40 Aligned_cols=194 Identities=26% Similarity=0.397 Sum_probs=159.8
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE-eCCEEecchHHHHHHHHhcCCCCCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLM 79 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~~~es~aI~~yL~~~~~~~~l~ 79 (202)
|+||++..||++++++++|+++|++|+.+.++....++++.++||.|+||+|+ ++|.+++||.+|++||++.++++.++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 79999999999999999999999999999998876677888899999999998 77899999999999999999877799
Q ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHHHH---hcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHH
Q psy3758 80 SSDPLMRARARLMLLNFEKEIFIHLYMLE---NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIA 156 (202)
Q Consensus 80 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~ 156 (202)
|.++.+++.++.|..+............. ...........+.....+.+.|+.+|++|++++ ++|+++|+||++++
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~ 159 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAIA 159 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHHH
Confidence 99999999999997766544433322111 111222344556777889999999999998877 99999999999999
Q ss_pred HHHHHHhhc--CcccCCCChhHHHHHHHHhcCccccccccc
Q psy3758 157 PLLWRLDYY--GINLSKSASPLIKYAERIFSRPSYMESLTP 195 (202)
Q Consensus 157 ~~l~~~~~~--~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 195 (202)
+.+.++... +..+...+|+|.+|++++.+||+++++.+.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 160 CAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 998876543 222335689999999999999999998765
No 7
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=1.9e-36 Score=222.09 Aligned_cols=195 Identities=24% Similarity=0.399 Sum_probs=159.9
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC----CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCCC
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF----NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQ 77 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~----~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~ 77 (202)
+||++..||+++++|++|.++||+|+.+.++.. ...++++++||.|+||+|+++|.+++||.+|++||++.++...
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 589999999999999999999999999999862 2467899999999999999999999999999999999998777
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhHHHHH----HHHHhccc-CCCHHHHHHHHHHHHHHHHHhcchhcC--CCeeecCCchH
Q psy3758 78 LMSSDPLMRARARLMLLNFEKEIFIHL----YMLENERN-KTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSM 150 (202)
Q Consensus 78 l~p~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~ 150 (202)
+.|.++.++++++.|+.++...+.... ........ .......+...+.+.+.|+.||++|++ ++|++|+++|+
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 160 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTL 160 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCH
Confidence 999999999999999988765544321 11111111 112223444566799999999999986 46999999999
Q ss_pred HHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccccccccchH
Q psy3758 151 LDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAE 197 (202)
Q Consensus 151 aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 197 (202)
||+++++.+.+....+.. .+.+|+|++|+++|.++|+++++.....
T Consensus 161 ADi~~~~~l~~~~~~~~~-~~~~p~l~~~~~~~~~rp~~~~~~~~~~ 206 (210)
T TIGR01262 161 ADLCLVPQVYNAERFGVD-LTPYPTLRRIAAALAALPAFQRAHPENQ 206 (210)
T ss_pred HHHHHHHHHHHHHHcCCC-cccchHHHHHHHHHhcCHHHHHhCcccC
Confidence 999999999887655443 3568999999999999999999988764
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=7.4e-37 Score=224.89 Aligned_cols=192 Identities=22% Similarity=0.260 Sum_probs=153.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEe-----CC--EEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVE-----RD--LILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~-----~~--~~~~es~aI~~yL~ 70 (202)
||||+.+ ++++++|+++|+++|+||+.+.++.. ..+++|+++||.|+||+|++ || .+++||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 5899887 68999999999999999999999874 34689999999999999996 45 47999999999999
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHH--H-hcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCC
Q psy3758 71 ERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYML--E-NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDE 147 (202)
Q Consensus 71 ~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~ 147 (202)
+.++ .+.|.++.+++++..|+.+....+...+... . .......+...+.....+.+.|..+|++|++++|++|++
T Consensus 81 ~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 158 (215)
T PRK13972 81 EKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGEN 158 (215)
T ss_pred HhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCCC
Confidence 9986 4678889999999999988765554433211 0 111122344556677889999999999998889999999
Q ss_pred chHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccccccccch
Q psy3758 148 FSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPA 196 (202)
Q Consensus 148 ~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 196 (202)
+|+|||++++.+......+.. .+.+|+|.+|++++.++|++++++.+.
T Consensus 159 ~t~ADi~l~~~~~~~~~~~~~-~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 159 YSIADIACWPWVNAWTRQRID-LAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred CCHHHHHHHHHHHHHhhcCCc-chhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 999999998877443333333 356899999999999999999887654
No 9
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-36 Score=220.46 Aligned_cols=189 Identities=37% Similarity=0.620 Sum_probs=164.3
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC--CCchhhhhhCCCCCccEEEeCCE-EecchHHHHHHHHhcCCCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF--NKPDNIFRMNPYGQVPILVERDL-ILYESNIINEYIDERFPYPQ 77 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~--~~~~~~~~~~p~~~vP~L~~~~~-~~~es~aI~~yL~~~~~~~~ 77 (202)
|+||+++.||+|++++++|.++|+||+.+.++.. ..+++|+++||.|+||+|++++. +++||.||++||+++||+++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 6899999999999999999999999999999987 47789999999999999997664 99999999999999999777
Q ss_pred CCCCCHH---HHHHHHHHHHHHhhhHHHHHHHHHhcc---cCC-CHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchH
Q psy3758 78 LMSSDPL---MRARARLMLLNFEKEIFIHLYMLENER---NKT-SIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSM 150 (202)
Q Consensus 78 l~p~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~ 150 (202)
++|.++. +++.+..|+.++...+.+.+....... ... .....+...+.+...++.+|..|++++|++|+++|+
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ti 160 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFTI 160 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCH
Confidence 8998774 788888999988777776666543321 112 456678888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCcccc
Q psy3758 151 LDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYM 190 (202)
Q Consensus 151 aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 190 (202)
||+.+++.+.++...+..+ +.+|+|.+|++|+.++|+++
T Consensus 161 AD~~~~~~~~~~~~~~~~~-~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 161 ADIALAPLLWRLALLGEEL-ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHhhhcCccc-ccChHHHHHHHHHHcCCchh
Confidence 9999999999877776655 66899999999999999965
No 10
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=5.1e-36 Score=220.54 Aligned_cols=195 Identities=26% Similarity=0.354 Sum_probs=158.1
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCC--
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY-- 75 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~-- 75 (202)
+|||+.+.| +++|++++|.++|++|+.+.++.. ..+++|+++||.|+||+|+++|.+++||.+|++||+++++.
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~ 81 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCC
Confidence 589997665 699999999999999999999874 45789999999999999999999999999999999999974
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHH-----Hhc--ccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCc
Q psy3758 76 PQLMSSDPLMRARARLMLLNFEKEIFIHLYML-----ENE--RNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEF 148 (202)
Q Consensus 76 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~ 148 (202)
+.++|.++.+++.++.|+.+....+.+.+... ... .........+...+++.+.++.+|++|++++|++|+++
T Consensus 82 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 161 (215)
T PLN02395 82 PDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGDFV 161 (215)
T ss_pred cCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCc
Confidence 35899999999999999998765543332211 111 11233445667788899999999999988899999999
Q ss_pred hHHHHHHHHHHHHHhhc-C-cccCCCChhHHHHHHHHhcCccccccccch
Q psy3758 149 SMLDVVIAPLLWRLDYY-G-INLSKSASPLIKYAERIFSRPSYMESLTPA 196 (202)
Q Consensus 149 s~aD~~l~~~l~~~~~~-~-~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 196 (202)
|+||+++++++.+.... + ....+.+|+|.+|++++.++|++++++++.
T Consensus 162 s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 162 SLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred CHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 99999999988765322 2 123455799999999999999999988653
No 11
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.6e-34 Score=217.88 Aligned_cols=193 Identities=21% Similarity=0.266 Sum_probs=152.8
Q ss_pred CEEecCCCChhhHHHHHHHHHh------CCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeC----CEEecchHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEK------GMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVER----DLILYESNIINE 67 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~------gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~----~~~~~es~aI~~ 67 (202)
|+||+.+ ||+|++|+++|.++ |++|+.+.++.. +.+++|+++||.|+||+|+++ |.+++||.||++
T Consensus 45 ~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~ 123 (264)
T PRK11752 45 LQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILL 123 (264)
T ss_pred eEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHH
Confidence 6899875 89999999999997 999999998874 356899999999999999964 369999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhhHH---HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeee
Q psy3758 68 YIDERFPYPQLMSSDPLMRARARLMLLNFEKEIF---IHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYML 144 (202)
Q Consensus 68 yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~ 144 (202)
||++.++ .++|.++.+++.++.|+.+...... ..+...............+....++.+.|+.+|++|++++|++
T Consensus 124 YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~ 201 (264)
T PRK11752 124 YLAEKFG--AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEYIA 201 (264)
T ss_pred HHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999987 4899999999999999887654321 1111111111122234556677788999999999999889999
Q ss_pred cCCchHHHHHHHHHHHHHhhc---C---cccCCCChhHHHHHHHHhcCccccccccch
Q psy3758 145 GDEFSMLDVVIAPLLWRLDYY---G---INLSKSASPLIKYAERIFSRPSYMESLTPA 196 (202)
Q Consensus 145 G~~~s~aD~~l~~~l~~~~~~---~---~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 196 (202)
|+++|+|||++++.+.++... + ....+.+|+|.+|+++|.++|++++++..+
T Consensus 202 Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 202 GDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 999999999999887665331 1 111356899999999999999999987654
No 12
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=2.8e-34 Score=211.19 Aligned_cols=184 Identities=21% Similarity=0.397 Sum_probs=149.4
Q ss_pred CCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCC---CCCCCCC
Q psy3758 6 GTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY---PQLMSSD 82 (202)
Q Consensus 6 ~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~---~~l~p~~ 82 (202)
...||+|++++++|.++|++|+.+.+++...+++|+++||.|+||+|+++|.+++||.+|++||++.++. +.+.|.+
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~ 95 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKH 95 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 4789999999999999999999999999988899999999999999999999999999999999999964 3455666
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhc------------------CCCeee
Q psy3758 83 PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL------------------KNKYML 144 (202)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~------------------~~~fl~ 144 (202)
+..++... .++..+..+... ..+...+...+++.+.|..||+.|. +++|+.
T Consensus 96 ~~~~~~~~--------~l~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~ 164 (236)
T TIGR00862 96 PESNTAGL--------DIFAKFSAYIKN---SNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLD 164 (236)
T ss_pred HHHHHHHH--------HHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCccc
Confidence 65444221 133333332222 1233344555668888888988886 579999
Q ss_pred cCCchHHHHHHHHHHHHHhhc-----CcccCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 145 GDEFSMLDVVIAPLLWRLDYY-----GINLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 145 G~~~s~aD~~l~~~l~~~~~~-----~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
|+++|+|||.+++.+.++... ++++++.+|+|.+|++++.++++|+++++..+.++
T Consensus 165 Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~ 225 (236)
T TIGR00862 165 GDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEIE 225 (236)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCChHHHH
Confidence 999999999999999888753 67777889999999999999999999999988776
No 13
>KOG0868|consensus
Probab=100.00 E-value=2.8e-35 Score=199.43 Aligned_cols=195 Identities=27% Similarity=0.437 Sum_probs=164.6
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC----CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCCC
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF----NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQ 77 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~----~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~ 77 (202)
+||++.-|.+++|||++|+.+||+|+.+.++.- +.+.+|.++||+++||+|++||.+++||.||++||++.+|++.
T Consensus 7 iLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~pp 86 (217)
T KOG0868|consen 7 ILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDPP 86 (217)
T ss_pred hhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCCC
Confidence 689888888999999999999999999999873 4566899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhHHHHHHHH--HhcccCCCHHHHHHHHHHHHHHHHHhcchhcC--CCeeecCCchHHHH
Q psy3758 78 LMSSDPLMRARARLMLLNFEKEIFIHLYML--ENERNKTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDV 153 (202)
Q Consensus 78 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~aD~ 153 (202)
|+|+++..|+.++.+...+...+.+..... ..-++.........+...+.+.+..||+.|.. ++|-+||++|+||+
T Consensus 87 LLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiADl 166 (217)
T KOG0868|consen 87 LLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIADL 166 (217)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehhhh
Confidence 999999999999999998887776654431 11111222122455666777899999999975 89999999999999
Q ss_pred HHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccccccccchH
Q psy3758 154 VIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAE 197 (202)
Q Consensus 154 ~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 197 (202)
++.+.++....+..++.. ||-+.+..+...+.|.|+.+.++..
T Consensus 167 ~L~pqv~nA~rf~vdl~P-YPti~ri~e~l~elpaFq~ahP~nQ 209 (217)
T KOG0868|consen 167 CLPPQVYNANRFHVDLTP-YPTITRINEELAELPAFQAAHPDNQ 209 (217)
T ss_pred ccchhhhhhhhccccCCc-CchHHHHHHHHHhCHHHHhcCCCCC
Confidence 999999988777665443 6999999999999999999887654
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=1.9e-33 Score=205.19 Aligned_cols=190 Identities=18% Similarity=0.234 Sum_probs=142.7
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhh--------hhCCCCCccEEEeCCEEecchHHHHHHHHhc
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIF--------RMNPYGQVPILVERDLILYESNIINEYIDER 72 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~--------~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~ 72 (202)
++||+++.+++++++|++|+++|++|+.+.++.. . +++. +.||.|+||+|++||.+++||.||++||+++
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~-~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~ 82 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGEN-G-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKK 82 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEecccc-c-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHH
Confidence 6899999999999999999999999999987532 2 2332 4799999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC--CCeeecCCchH
Q psy3758 73 FPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSM 150 (202)
Q Consensus 73 ~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~ 150 (202)
++ +.+.+..+++.++.+...+. .+...+..... ......+...+.+.+.|..||+.|++ ++|++|+++|+
T Consensus 83 ~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~ 154 (205)
T PTZ00057 83 YK---ICGESELNEFYADMIFCGVQ-DIHYKFNNTNL----FKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTY 154 (205)
T ss_pred cC---CCCCCHHHHHHHHHHHHHHH-HHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccH
Confidence 97 34555555555554443322 22211111000 01122344567889999999999975 37999999999
Q ss_pred HHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 151 LDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 151 aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
||+++++.+.+.........+.+|+|.+|++++.++|+++++++++...|
T Consensus 155 AD~~l~~~~~~~~~~~~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~~~~ 204 (205)
T PTZ00057 155 ADLAVFNLYDDIETKYPNSLKNFPLLKAHNEFISNLPNIKNYISNRKESV 204 (205)
T ss_pred HHHHHHHHHHHHHHhChhhhccChhHHHHHHHHHhChHHHHHHHhCCCcC
Confidence 99999998877653222224668999999999999999999998877543
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=3e-33 Score=205.22 Aligned_cols=182 Identities=24% Similarity=0.411 Sum_probs=143.4
Q ss_pred cCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCCCCCCCCHH
Q psy3758 5 SGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPL 84 (202)
Q Consensus 5 ~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~l~p~~~~ 84 (202)
.+..||||++++++|+++|++|+.+.+++...+++|+++||.|+||+|++||.+++||.+|++||++++++..+ .++.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~~~ 93 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KTPA 93 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CCHH
Confidence 35679999999999999999999999999888889999999999999999999999999999999999986544 3566
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhc--CCCeeecCCchHHHHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWRL 162 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~fl~G~~~s~aD~~l~~~l~~~ 162 (202)
+++.++..+. ..+..+.... . ..+.....+.+.|..+|++|+ +++|++|+++|+||+++++.+.++
T Consensus 94 ~~a~i~~~~~-------~~~~~~~~~~---~--~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l 161 (213)
T PLN02378 94 EFASVGSNIF-------GTFGTFLKSK---D--SNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHL 161 (213)
T ss_pred HHHHHHHHHH-------HHHHHHHhcC---C--hhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHH
Confidence 7776554322 1222222211 1 112334577788999999997 478999999999999999998765
Q ss_pred hhc-----CcccCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 163 DYY-----GINLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 163 ~~~-----~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
... +..+.+.+|+|.+|+++|.++|++++++..+...+
T Consensus 162 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~ 204 (213)
T PLN02378 162 QVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVI 204 (213)
T ss_pred HHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCChHHHH
Confidence 422 22344668999999999999999999998876543
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=5.3e-32 Score=203.25 Aligned_cols=181 Identities=23% Similarity=0.462 Sum_probs=144.2
Q ss_pred CCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCCCCCCCCHHH
Q psy3758 6 GTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLM 85 (202)
Q Consensus 6 ~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~l~p~~~~~ 85 (202)
...||+|++++++|+++|+||+.+.++....+++|+++||.|+||+|+++|..++||.+|++||++.+|++.+ .++.+
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L--~~~~e 147 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPL--ATPPE 147 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCC--CCHHH
Confidence 4569999999999999999999999999888899999999999999998889999999999999999987655 35777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC-CCeeecCCchHHHHHHHHHHHHHhh
Q psy3758 86 RARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWRLDY 164 (202)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~G~~~s~aD~~l~~~l~~~~~ 164 (202)
++.+..++.. .+..+.... ... +...+.+.+.|..+|++|++ ++|++|+++|+||+++++.+.++..
T Consensus 148 ra~i~~~l~~-------~~~~~~~~~---~~~--~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~ 215 (265)
T PLN02817 148 KASVGSKIFS-------TFIGFLKSK---DPG--DGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEI 215 (265)
T ss_pred HHHHHHHHHH-------HHHHHhccC---Ccc--hHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHH
Confidence 8877664321 111222111 111 12235677889999999975 7999999999999999999876643
Q ss_pred c-----CcccCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 165 Y-----GINLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 165 ~-----~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
. +.++.+.+|+|.+|++++.++|+++++.+..+..+
T Consensus 216 ~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~ 256 (265)
T PLN02817 216 ALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVI 256 (265)
T ss_pred HHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCCCHHHHH
Confidence 2 23445678999999999999999999998766543
No 17
>PRK10387 glutaredoxin 2; Provisional
Probab=100.00 E-value=2.8e-32 Score=199.99 Aligned_cols=183 Identities=23% Similarity=0.228 Sum_probs=139.5
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE-eCCEEecchHHHHHHHHhcCCCCCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLM 79 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~~~es~aI~~yL~~~~~~~~l~ 79 (202)
||||+++.||+|++++++|+++|+||+.+.++...... -.+.||.++||+|+ ++|.+++||.+|++||+++||++.+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 79 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT 79 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC
Confidence 79999999999999999999999999999886543222 25789999999995 88999999999999999999865443
Q ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcc---cCCCHH---------------------HHHHHHHHHHHHHHHhcc
Q psy3758 80 SSDPLMRARARLMLLNFEKEIFIHLYMLENER---NKTSIK---------------------GYKRAREEIRDRLITLAP 135 (202)
Q Consensus 80 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------~~~~~~~~~~~~l~~le~ 135 (202)
+ .+++.++.|+.+....+...+....... ...... ..+...+++.+.|+.+|+
T Consensus 80 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 156 (210)
T PRK10387 80 G---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDP 156 (210)
T ss_pred C---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 2 2567788888776544443322211100 000000 113556789999999999
Q ss_pred hhcCCCeeecCCchHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCcccc
Q psy3758 136 LFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYM 190 (202)
Q Consensus 136 ~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 190 (202)
+|++ +|++|+++|+||+++++.+.++...+. + +.+|+|.+|++||.++|++.
T Consensus 157 ~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~~-~-~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 157 LIVK-PNAVNGELSTDDIHLFPILRNLTLVKG-I-EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HhcC-ccccCCCCCHHHHHHHHHHhcceeecC-C-CCCHHHHHHHHHHHHHhCCC
Confidence 9987 999999999999999999988876422 1 23599999999999999874
No 18
>KOG0867|consensus
Probab=100.00 E-value=8.4e-32 Score=198.40 Aligned_cols=196 Identities=22% Similarity=0.325 Sum_probs=166.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCC---CCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCC-CC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL---FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP-YP 76 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~-~~ 76 (202)
|+||++..|+.++++.+.+.++|++|+.+.++. ++.+++|+++||.|+||+|+|+|..++||.||+.||.++|. .+
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~ 82 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLG 82 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCC
Confidence 689999999999999999999999999997765 58899999999999999999999999999999999999996 33
Q ss_pred C-CCCCCHHHHHHHHHHHHHHhhhHHHHH--HHHHhc---ccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchH
Q psy3758 77 Q-LMSSDPLMRARARLMLLNFEKEIFIHL--YMLENE---RNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSM 150 (202)
Q Consensus 77 ~-l~p~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~ 150 (202)
. ++|.++.+++.+++|+.+....+.... ..+... ..............++.+.++.+|..|.++.|+.|+++|+
T Consensus 83 ~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~tl 162 (226)
T KOG0867|consen 83 GILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQLTL 162 (226)
T ss_pred cccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcccH
Confidence 4 899999999999999988877766653 221111 2234677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--hcCcccCCCChhHHHHHHHHhcCccccccccch
Q psy3758 151 LDVVIAPLLWRLD--YYGINLSKSASPLIKYAERIFSRPSYMESLTPA 196 (202)
Q Consensus 151 aD~~l~~~l~~~~--~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 196 (202)
||+.+.+.+..+. .........+|++.+|++++.++|++.+.....
T Consensus 163 ADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~ 210 (226)
T KOG0867|consen 163 ADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEANEKG 210 (226)
T ss_pred HHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHHHH
Confidence 9999999887763 222345667899999999999999988765443
No 19
>KOG1695|consensus
Probab=99.98 E-value=3.3e-31 Score=189.34 Aligned_cols=195 Identities=19% Similarity=0.211 Sum_probs=162.3
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCCCCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS 80 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~l~p 80 (202)
.||+|++.++++..+|+++++.|++||+..++.++..++.....|+|++|+|..||..+.||.||++||+++++ +.+
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g---l~G 80 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG---LAG 80 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---cCC
Confidence 38999999999999999999999999999999876434455568999999999999999999999999999998 899
Q ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHHHh-cccCCCHHHHH-HHHHHHHHHHHHhcchhc--CCCeeecCCchHHHHHHH
Q psy3758 81 SDPLMRARARLMLLNFEKEIFIHLYMLEN-ERNKTSIKGYK-RAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIA 156 (202)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~l~~le~~L~--~~~fl~G~~~s~aD~~l~ 156 (202)
+++.+++.++.+.+.+.+.....+...+. ..........+ .......+.+..+++.|. +++|++||++|+||+.++
T Consensus 81 kt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~ 160 (206)
T KOG1695|consen 81 KTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIA 160 (206)
T ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHH
Confidence 99999999999999887666554444332 11122222222 556677788888898897 368999999999999999
Q ss_pred HHHHHHhh-cCcccCCCChhHHHHHHHHhcCccccccccchHh
Q psy3758 157 PLLWRLDY-YGINLSKSASPLIKYAERIFSRPSYMESLTPAEK 198 (202)
Q Consensus 157 ~~l~~~~~-~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 198 (202)
..+..+.. ......+.+|+|+++.+++.++|.+++++++++.
T Consensus 161 e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~~ 203 (206)
T KOG1695|consen 161 EHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIKKYLESRPV 203 (206)
T ss_pred HHHHHHHHhcCchhhccChHHHHHHHHHhcCchHHHHHhcCCC
Confidence 99988887 5666677789999999999999999999988754
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.97 E-value=8.6e-30 Score=186.31 Aligned_cols=181 Identities=22% Similarity=0.193 Sum_probs=134.5
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE-eCCEEecchHHHHHHHHhcCCCCCCCC
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMS 80 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~~~es~aI~~yL~~~~~~~~l~p 80 (202)
|||++..||+|+|||++|.++|++|+.+.+...... ...+.||.|+||+|+ +||.+++||.+|++||+++||.+.+.|
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~ 79 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTG 79 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCC
Confidence 699999999999999999999999999877554322 347889999999998 889999999999999999998654433
Q ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHHHhccc--CC-----------CHH-----------HHHHHHHHHHHHHHHhcch
Q psy3758 81 SDPLMRARARLMLLNFEKEIFIHLYMLENERN--KT-----------SIK-----------GYKRAREEIRDRLITLAPL 136 (202)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~-----------~~~~~~~~~~~~l~~le~~ 136 (202)
. +++.+..|+.++...+...+........ .. ... ..+...+.+++.|+.+|++
T Consensus 80 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~ 156 (209)
T TIGR02182 80 K---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKL 156 (209)
T ss_pred C---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2 3566677776655444333221110000 00 000 0135567889999999999
Q ss_pred hcCCCeeecCCchHHHHHHHHHHHHHhhcCcccCCCCh-hHHHHHHHHhcCcccc
Q psy3758 137 FLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSAS-PLIKYAERIFSRPSYM 190 (202)
Q Consensus 137 L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~~ 190 (202)
|++++|+.| ++|+||+++++.+.++...+. . + .| +|.+|++||++++++.
T Consensus 157 L~~~~~l~g-~~TiADi~l~~~l~~~~~~~~-~-~-~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 157 IDGPNAVNG-ELSEDDILVFPLLRNLTLVAG-I-N-WPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred HhCccccCC-CCCHHHHHHHHHhcCeeeecC-C-C-CChHHHHHHHHHHHHhCCC
Confidence 999999854 799999999999988776431 1 1 35 9999999999998764
No 21
>KOG4420|consensus
Probab=99.94 E-value=8.3e-27 Score=167.23 Aligned_cols=198 Identities=28% Similarity=0.370 Sum_probs=147.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCC---CCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCC-CC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL---FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP-YP 76 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~-~~ 76 (202)
++||.++.|--+||||++++++||+|+...|++ ++..++|..+||.|.||||++++.+|.++.-|++|+++.+- +.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger 106 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGER 106 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccc
Confidence 579999999999999999999999999999887 57889999999999999999999999999999999999885 44
Q ss_pred CCCCC-CHHHHHHHHHHHHHH-----hh-------------------------hHHHHHHHHH---hc------------
Q psy3758 77 QLMSS-DPLMRARARLMLLNF-----EK-------------------------EIFIHLYMLE---NE------------ 110 (202)
Q Consensus 77 ~l~p~-~~~~~a~~~~~~~~~-----~~-------------------------~~~~~~~~~~---~~------------ 110 (202)
.|.|. +..+-.++....... .. .+........ ..
T Consensus 107 ~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ak 186 (325)
T KOG4420|consen 107 VLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAK 186 (325)
T ss_pred cccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHH
Confidence 56673 111111221111000 00 0000000000 00
Q ss_pred --------ccCCCHHHHHHHHHHHHHHHHHhcchhcC----CCeeecCCchHHHHHHHHHHHHHhhcCcc---c-CCCCh
Q psy3758 111 --------RNKTSIKGYKRAREEIRDRLITLAPLFLK----NKYMLGDEFSMLDVVIAPLLWRLDYYGIN---L-SKSAS 174 (202)
Q Consensus 111 --------~~~~~~~~~~~~~~~~~~~l~~le~~L~~----~~fl~G~~~s~aD~~l~~~l~~~~~~~~~---~-~~~~p 174 (202)
....+....++..+.+...|+.+|..|.+ ..|++|+++|+||+.+.+.++++...|.+ + ....|
T Consensus 187 qkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gsrp 266 (325)
T KOG4420|consen 187 QKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGSRP 266 (325)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCCCc
Confidence 11223345667778888888999988866 68999999999999999999999988754 2 24579
Q ss_pred hHHHHHHHHhcCccccccccchHh
Q psy3758 175 PLIKYAERIFSRPSYMESLTPAEK 198 (202)
Q Consensus 175 ~l~~~~~~~~~~p~~~~~~~~~~~ 198 (202)
+|..|++|++.|+++++++...--
T Consensus 267 nle~Yf~rvrrR~sf~kvlg~~fn 290 (325)
T KOG4420|consen 267 NLESYFERVRRRFSFRKVLGDIFN 290 (325)
T ss_pred cHHHHHHHHHhhhHHHHhhhhHHH
Confidence 999999999999999999876543
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.92 E-value=2.2e-24 Score=180.19 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=128.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE-eCCEEecchHHHHHHHHhcCCCCCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLM 79 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~~~es~aI~~yL~~~~~~~~l~ 79 (202)
++||+.+.|+ +.++.++|.+.|++|+.+. .+|.|+||+|+ ++|.+++||.||++||++.++...|+
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~ 69 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFY 69 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCC
Confidence 5899998875 7789999999999999875 26899999999 58899999999999999999887899
Q ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHH
Q psy3758 80 SSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 159 (202)
Q Consensus 80 p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l 159 (202)
|.++.+++.+++|+.++.... . ...+.+.|+.||.+|+.++|++|+++|+||+++++.+
T Consensus 70 p~d~~erAqV~qWL~~~~~~~--------------~-------~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L 128 (722)
T PLN02907 70 GQDAFESSQVDEWLDYAPTFS--------------S-------GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGL 128 (722)
T ss_pred CCCHHHHHHHHHHHHHHhhcc--------------c-------HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHH
Confidence 999999999999998765311 0 0135567899999999999999999999999999988
Q ss_pred HHHh-h-cCcccCCCChhHHHHHHHHhcCcc
Q psy3758 160 WRLD-Y-YGINLSKSASPLIKYAERIFSRPS 188 (202)
Q Consensus 160 ~~~~-~-~~~~~~~~~p~l~~~~~~~~~~p~ 188 (202)
.... . .+....+.+|+|.+|++++.++|+
T Consensus 129 ~~~~~~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 129 AGSGQRWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence 5541 1 122234668999999999999999
No 23
>KOG1422|consensus
Probab=99.92 E-value=1.4e-23 Score=146.49 Aligned_cols=185 Identities=22% Similarity=0.431 Sum_probs=150.5
Q ss_pred CCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCCCCCCCCHHH
Q psy3758 6 GTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLM 85 (202)
Q Consensus 6 ~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~l~p~~~~~ 85 (202)
-..|||||++.|.|.++|++|.+..|+....+++|+++.|.|++|+|..|+..++||..|-++|++.+|.+++.--++.|
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E 97 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPE 97 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999876543222444
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC---CCeeecCCchHHHHHHHHHHHHH
Q psy3758 86 RARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK---NKYMLGDEFSMLDVVIAPLLWRL 162 (202)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~fl~G~~~s~aD~~l~~~l~~~ 162 (202)
.+.+. ..++..+..+... ..+...+.....+.+.|..|+.+|+. ++|+.|+++|+||+.+.+-|+.+
T Consensus 98 ~asag-------~diF~kF~~fi~k---sk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i 167 (221)
T KOG1422|consen 98 SASAG-------SDIFAKFSAFIKK---SKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHI 167 (221)
T ss_pred HHhhH-------HHHHHHHHHHHhC---chhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHH
Confidence 44322 2444455555322 12223344455666778889999974 89999999999999999988877
Q ss_pred hhc-----CcccCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 163 DYY-----GINLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 163 ~~~-----~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
+.. +++++++.+++++|+..+.++.++..+.++...++
T Consensus 168 ~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~ 210 (221)
T KOG1422|consen 168 KVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPADQEII 210 (221)
T ss_pred HHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCchHHHHH
Confidence 654 67888999999999999999999999999887765
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.87 E-value=4e-22 Score=122.29 Aligned_cols=74 Identities=41% Similarity=0.735 Sum_probs=71.0
Q ss_pred EecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCC
Q psy3758 3 LYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 76 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~ 76 (202)
||+++.||||+|+|++|.++||+|+.+.++..+..+++.+.||.++||+|++||.+++||.+|++||++.++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999998888999999999999999999999999999999999999864
No 25
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.86 E-value=3.4e-21 Score=117.24 Aligned_cols=70 Identities=37% Similarity=0.597 Sum_probs=65.3
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCC---CCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL---FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~---~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
++||+++.|++|++++++|.++|++|+.+.++. ++.+++|.++||.|+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999999887 3456789999999999999999999999999999995
No 26
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.85 E-value=4.6e-21 Score=117.08 Aligned_cols=73 Identities=58% Similarity=0.969 Sum_probs=69.5
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 73 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~ 73 (202)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||.|++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 7999999999999999999999999999999988888899999999999999999999999999999999864
No 27
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.85 E-value=8.9e-21 Score=116.07 Aligned_cols=73 Identities=36% Similarity=0.545 Sum_probs=68.5
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCC-CCccEEEeCCEEecchHHHHHHHHhcC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPY-GQVPILVERDLILYESNIINEYIDERF 73 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~~~es~aI~~yL~~~~ 73 (202)
|+||+++.||+|++++++|+++|++|+.+.++....++++.+.||. |++|+|+++|.+++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 7999999999999999999999999999999888778899999995 999999999999999999999998763
No 28
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.85 E-value=8.9e-21 Score=118.63 Aligned_cols=70 Identities=31% Similarity=0.603 Sum_probs=66.5
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCC
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 76 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~ 76 (202)
..||||+++|++|+++||+|+.+.+++...+++|+++||.|+||+|+++|.+++||.+|++||++.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 5789999999999999999999999999889999999999999999999999999999999999998643
No 29
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.83 E-value=3.5e-20 Score=113.47 Aligned_cols=71 Identities=25% Similarity=0.488 Sum_probs=65.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDE 71 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~ 71 (202)
|+||+++.||+|++++++|+++|++|+.+.++.. ...+++.+.||.|+||+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 7999999999999999999999999999999863 3468999999999999999999999999999999974
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.83 E-value=3e-20 Score=114.47 Aligned_cols=73 Identities=27% Similarity=0.350 Sum_probs=65.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEe--CCEEecchHHHHHHHHhcC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVE--RDLILYESNIINEYIDERF 73 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~--~~~~~~es~aI~~yL~~~~ 73 (202)
|+||+++.||+|++++++|.++|+||+.+.++... ..+++++.||.|+||+|++ +|..++||.+|++||++.|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 68999999999999999999999999999887543 4578999999999999996 4689999999999999864
No 31
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.83 E-value=2.2e-20 Score=113.86 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=66.3
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDE 71 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~ 71 (202)
|+||+++.|++|+++|++|.++|++|+.+.++.....+++.++||.|+||+|+++|..++||.+|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 68999999999999999999999999999998765566788999999999999999999999999999976
No 32
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.82 E-value=9e-20 Score=112.21 Aligned_cols=72 Identities=38% Similarity=0.662 Sum_probs=66.3
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhc
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 72 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~ 72 (202)
|+||+++.||+|+++|++|+++|++|+.+.++.. ..++++.++||.|++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 6899999999999999999999999999988864 45678999999999999999999999999999999863
No 33
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.82 E-value=1.3e-19 Score=111.49 Aligned_cols=73 Identities=30% Similarity=0.460 Sum_probs=66.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC---CchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 73 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~ 73 (202)
++||+++.|++|++++++|+++|++|+.+.++... ..+++.+.||.|+||+|+++|.+++||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 68999999999999999999999999999998642 45689999999999999999999999999999999864
No 34
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.82 E-value=9.4e-20 Score=110.56 Aligned_cols=69 Identities=35% Similarity=0.648 Sum_probs=64.8
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeC-CEEecchHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVER-DLILYESNIINEYI 69 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~~~~es~aI~~yL 69 (202)
.+||+++.||+|++++++|+++|++|+.+.++.....++++++||.|+||+|+++ |..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 3799999999999999999999999999999988777899999999999999974 89999999999996
No 35
>KOG3029|consensus
Probab=99.81 E-value=4.4e-19 Score=129.12 Aligned_cols=183 Identities=16% Similarity=0.262 Sum_probs=119.3
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH----------
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYID---------- 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~---------- 70 (202)
++||+|..||||.|||..|.+.||+|++++|++-...+ .+.+.+.+||+|...|..+.||.+|+.-|.
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~l 168 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQDL 168 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--ccccccccccEEEeccceechhHHHHHHHHHHhccCCCCH
Confidence 58999999999999999999999999999998854433 445678999999976767999999988763
Q ss_pred ----hcCCCCCCCCC-------------------C----HHHHHHHHHHHHHHhhhHHHHHHH-----------------
Q psy3758 71 ----ERFPYPQLMSS-------------------D----PLMRARARLMLLNFEKEIFIHLYM----------------- 106 (202)
Q Consensus 71 ----~~~~~~~l~p~-------------------~----~~~~a~~~~~~~~~~~~~~~~~~~----------------- 106 (202)
+.||..+.+-. + .+.+..-..|..+.+..+...+..
T Consensus 169 ~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf~ 248 (370)
T KOG3029|consen 169 GEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWFS 248 (370)
T ss_pred HHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHHH
Confidence 23331111000 0 001111123333333222111100
Q ss_pred -------------------------HHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC-CCeeecCCchHHHHHHHHHHH
Q psy3758 107 -------------------------LENERNKTSIKGYKRAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLW 160 (202)
Q Consensus 107 -------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~G~~~s~aD~~l~~~l~ 160 (202)
+...+.-...-.....++.+.++++.+-..|+. .+|+.|++|++||+.+|+++.
T Consensus 249 q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl~ 328 (370)
T KOG3029|consen 249 QAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVLR 328 (370)
T ss_pred HcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhhh
Confidence 000000111112223667777888888788855 899999999999999999998
Q ss_pred HHhhcC--cccCCCChhHHHHHHHHhcC
Q psy3758 161 RLDYYG--INLSKSASPLIKYAERIFSR 186 (202)
Q Consensus 161 ~~~~~~--~~~~~~~p~l~~~~~~~~~~ 186 (202)
.+.... -++.. +.++..|+-+|.+.
T Consensus 329 sm~gc~afkd~~q-~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 329 SMEGCQAFKDCLQ-NTSIGEWYYRMEAL 355 (370)
T ss_pred HhhhhhHHHHHHh-cchHHHHHHHHHHH
Confidence 887763 23333 37899999999874
No 36
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=2.1e-19 Score=109.67 Aligned_cols=70 Identities=30% Similarity=0.486 Sum_probs=65.0
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
|+||+++.||+|++++++|.++|++|+.+.++.. +..+++.+.||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 6999999999999999999999999999999863 356889999999999999999999999999999984
No 37
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.80 E-value=1.9e-19 Score=109.84 Aligned_cols=70 Identities=30% Similarity=0.620 Sum_probs=65.7
Q ss_pred CEEecCCCChhhHHHHHHHHH--hCCCcEEEEcCCCCCchhhhhhCCCCCccEEE-eCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFE--KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~--~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~~~es~aI~~yL~ 70 (202)
|+||+++.||+|+++|++|.+ +|++|+.+.++.....+++++.||.+++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 699999999999999999999 89999999998877778999999999999998 57899999999999985
No 38
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.80 E-value=1.3e-19 Score=110.23 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=64.2
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDE 71 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~ 71 (202)
++||+++.|++|+++|++|+++|++|+.+.++... ...++.++||.+++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 68999999999999999999999999999988753 234588899999999999999999999999999974
No 39
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.80 E-value=2.7e-19 Score=111.38 Aligned_cols=73 Identities=30% Similarity=0.636 Sum_probs=66.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeC---CEEecchHHHHHHHHhcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVER---DLILYESNIINEYIDERFP 74 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~---~~~~~es~aI~~yL~~~~~ 74 (202)
|+||+++. |+|++++++|.++|++|+.+.++.. ..+++|+++||.++||+|+++ |..++||.+|++||++.++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 58999986 9999999999999999999999863 456889999999999999976 8999999999999999875
No 40
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.5e-19 Score=119.40 Aligned_cols=183 Identities=25% Similarity=0.290 Sum_probs=129.4
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE-eCCEEecchHHHHHHHHhcCCCCCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLM 79 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~~~es~aI~~yL~~~~~~~~l~ 79 (202)
|+||-+..||||-|+||++..+|||++...+.-++... =..+-...+||+|+ ++|..+.||..|++|+++..+.+-+.
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T-p~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt 79 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET-PIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLT 79 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccC-hhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhc
Confidence 79999999999999999999999999998876543211 12334578999999 88999999999999999998754343
Q ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHH-----------------HHhcccCCC-------HHHHHHHHHHHHHHHHHhcc
Q psy3758 80 SSDPLMRARARLMLLNFEKEIFIHLYM-----------------LENERNKTS-------IKGYKRAREEIRDRLITLAP 135 (202)
Q Consensus 80 p~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-------~~~~~~~~~~~~~~l~~le~ 135 (202)
.. -+-.+..|+............. ++..++... -........++...|+.++.
T Consensus 80 ~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~ 156 (215)
T COG2999 80 GK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDK 156 (215)
T ss_pred cC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHH
Confidence 32 1334455655544433333222 111111111 12245667788888888888
Q ss_pred hhcCCCeeecCCchHHHHHHHHHHHHHhhc-CcccCCCChhHHHHHHHHhcCccccc
Q psy3758 136 LFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFSRPSYME 191 (202)
Q Consensus 136 ~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~~~ 191 (202)
.+.+..- +...+|.-|+.+|+.+.++... |..++ .++..|.++|.+...+.-
T Consensus 157 Li~~~s~-~n~~l~~ddi~vFplLRnlt~v~gi~wp---s~v~dy~~~msektqV~L 209 (215)
T COG2999 157 LIVGPSA-VNGELSEDDILVFPLLRNLTLVAGIQWP---SRVADYRDNMSEKTQVNL 209 (215)
T ss_pred HhcCcch-hccccchhhhhhhHHhccceecccCCCc---HHHHHHHHHHHHhhCcch
Confidence 8866442 2348999999999999988766 55666 569999999999877653
No 41
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.80 E-value=3.3e-19 Score=109.28 Aligned_cols=70 Identities=30% Similarity=0.416 Sum_probs=65.1
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC--CCchhhhhhCCCCCccEEEe-CCEEecchHHHHHHHHh
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF--NKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDE 71 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~--~~~~~~~~~~p~~~vP~L~~-~~~~~~es~aI~~yL~~ 71 (202)
+||+++.||++++++++|+++|++|+.+.++.. +..++|+++||.|++|+|++ +|.+++||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 46789999999999999995 58999999999999976
No 42
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.79 E-value=5.2e-19 Score=107.90 Aligned_cols=70 Identities=29% Similarity=0.466 Sum_probs=64.5
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
|+||+++.|+++++++++|+++|++|+.+.++.. ...++++++||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 6899999999999999999999999999988753 346789999999999999999999999999999984
No 43
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.79 E-value=5.2e-19 Score=107.92 Aligned_cols=70 Identities=39% Similarity=0.540 Sum_probs=65.2
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
|+||++..|++|+++|++|+++|++|+.+.++.. ...+++++.||.+++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 7999999999999999999999999999999873 456789999999999999999999999999999985
No 44
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.79 E-value=6.6e-19 Score=108.32 Aligned_cols=73 Identities=34% Similarity=0.514 Sum_probs=66.7
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP 74 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~ 74 (202)
|+||+++. +++++++++|+++|++|+.+.++.. ...+++++.||.+++|+|+++|..++||.+|++||++.+|
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 68999986 5899999999999999999999863 5678899999999999999999999999999999999864
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.79 E-value=4.1e-19 Score=112.40 Aligned_cols=70 Identities=46% Similarity=0.743 Sum_probs=65.5
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeC-CEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVER-DLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~~~~es~aI~~yL~ 70 (202)
|+||+++.||+|++++++|+++|++|+.+.++.....+++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 6899999999999999999999999999999987767789999999999999976 899999999999985
No 46
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.79 E-value=6.2e-19 Score=108.72 Aligned_cols=73 Identities=36% Similarity=0.506 Sum_probs=65.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeC-CEEecchHHHHHHHHhcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVER-DLILYESNIINEYIDERFP 74 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~-~~~~~es~aI~~yL~~~~~ 74 (202)
|+||+++.| .+++++++|.++|++|+.+.++.. +..++++++||.+++|+|+++ |..++||.+|++||++.+|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 689999976 599999999999999999998874 357899999999999999976 8999999999999999875
No 47
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.79 E-value=4.7e-19 Score=107.50 Aligned_cols=70 Identities=31% Similarity=0.366 Sum_probs=61.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeC-CEEecchHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVER-DLILYESNIINEYIDE 71 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~-~~~~~es~aI~~yL~~ 71 (202)
|+||++..||+|+++|++|.++|++|+.+.++.... ....+.+|.++||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~-~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE-ATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch-HHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 789999999999999999999999999998876432 344678999999999965 8999999999999974
No 48
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.79 E-value=4.4e-19 Score=108.51 Aligned_cols=70 Identities=34% Similarity=0.620 Sum_probs=64.0
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEE-eCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~-~~~~~~~es~aI~~yL~ 70 (202)
|+||+++.||+|+++|++|.++|++|+.+.++.. ...+++.+.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 7999999999999999999999999999998863 3467899999999999999 57889999999999985
No 49
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.78 E-value=9.7e-19 Score=107.32 Aligned_cols=71 Identities=35% Similarity=0.517 Sum_probs=62.4
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC---CCchhhhhhCCC-CCccEEEeC-CEEecchHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF---NKPDNIFRMNPY-GQVPILVER-DLILYESNIINEYIDE 71 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~-~~vP~L~~~-~~~~~es~aI~~yL~~ 71 (202)
|+|++|+.+++++++|++|+++|++|+.+.++.. +.++++++.||. |+||+|+++ |.+++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 5778888888999999999999999999999874 334899999999 999999998 9999999999999985
No 50
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.75 E-value=4.5e-18 Score=105.82 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=62.0
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC----Cchhhhhh-----CCCCCccEEEeCCEEecchHHHHHHHHhc
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN----KPDNIFRM-----NPYGQVPILVERDLILYESNIINEYIDER 72 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~----~~~~~~~~-----~p~~~vP~L~~~~~~~~es~aI~~yL~~~ 72 (202)
+|||++.++.|+++|++|+++|++|+.+.++... ..+++.+. +|.|+||+|++||..++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 7999999999999999999999999999998743 12444422 29999999999999999999999999876
Q ss_pred C
Q psy3758 73 F 73 (202)
Q Consensus 73 ~ 73 (202)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 51
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.75 E-value=3.7e-18 Score=105.25 Aligned_cols=71 Identities=25% Similarity=0.505 Sum_probs=62.0
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeC----CEEecchHHHHHHHHhcC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVER----DLILYESNIINEYIDERF 73 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~----~~~~~es~aI~~yL~~~~ 73 (202)
|+||+++.||+|++++++|.++|++|+.+.++..... + .+.||.++||+|+++ |.+++||.+|++||++..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~-~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRK-E-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHH-H-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 6899999999999999999999999999988764332 3 467999999999954 789999999999999864
No 52
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.74 E-value=8.1e-18 Score=101.54 Aligned_cols=65 Identities=40% Similarity=0.741 Sum_probs=56.3
Q ss_pred CChhhHHHHHHHHHhCCCcEEEEcCC----CCCchhhhhhCCCCCccEEEe-CCEEecchHHHHHHHHhc
Q psy3758 8 TCPFSQRCRLVLFEKGMDFEIRDIDL----FNKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDER 72 (202)
Q Consensus 8 ~s~~~~~v~~~l~~~gi~~~~~~~~~----~~~~~~~~~~~p~~~vP~L~~-~~~~~~es~aI~~yL~~~ 72 (202)
.|||++|++++|+++|++|+...+.. .+.+++|.+.||.|+||+|++ +|.++.||.+|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999988843 355689999999999999996 789999999999999863
No 53
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.74 E-value=9.9e-18 Score=102.69 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=60.7
Q ss_pred CEEecCC-------CChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcC
Q psy3758 1 MVLYSGT-------TCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 73 (202)
Q Consensus 1 ~~Ly~~~-------~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~ 73 (202)
++||++. .||+|++++++|.++|++|+.+.++. .+.||.|++|+|+++|..++||.+|++||+++|
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~ 74 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPKGKLPFIELNGEKIADSELIIDHLEEKY 74 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHHHc
Confidence 4899887 68999999999999999999988764 258999999999999999999999999999986
Q ss_pred C
Q psy3758 74 P 74 (202)
Q Consensus 74 ~ 74 (202)
+
T Consensus 75 ~ 75 (75)
T cd03080 75 G 75 (75)
T ss_pred C
Confidence 4
No 54
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.73 E-value=1.7e-17 Score=102.50 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=61.7
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhC-----CCCCccEEEeCCEEecchHHHHHHHHhcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMN-----PYGQVPILVERDLILYESNIINEYIDERFP 74 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~-----p~~~vP~L~~~~~~~~es~aI~~yL~~~~~ 74 (202)
.+||+++.|+.+++++++|+++|++|+.+.++.. +++.+.+ |.|+||+|++||.+++||.||++||+++++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 4899999999999999999999999999988752 2333333 589999999999999999999999999876
No 55
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.73 E-value=1.4e-17 Score=104.36 Aligned_cols=67 Identities=24% Similarity=0.509 Sum_probs=58.9
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCCCc---hhhhhhCCCCCccEEEeC-CEEecchHHHHHHHHhcCC
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFNKP---DNIFRMNPYGQVPILVER-DLILYESNIINEYIDERFP 74 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~---~~~~~~~p~~~vP~L~~~-~~~~~es~aI~~yL~~~~~ 74 (202)
+.||+|+++|++|.++|++|+.+.++..... .++ ++||.+++|+|+++ |..++||.+|++||+++||
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 7899999999999999999999998865322 334 78999999999988 8999999999999999875
No 56
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.72 E-value=1.5e-16 Score=104.24 Aligned_cols=105 Identities=41% Similarity=0.771 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHh
Q psy3758 84 LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 163 (202)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~ 163 (202)
.+|+++..|+.+++..+.+.+..+... .+...+...+.+.+.|..+|++|++++|++|+++|+|||++++.+.+..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~ 77 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKG----RKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLP 77 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 578999999999988888776655432 2455677888999999999999999999999999999999999987666
Q ss_pred hcCcccCCCChhHHHHHHHHhcCcccccc
Q psy3758 164 YYGINLSKSASPLIKYAERIFSRPSYMES 192 (202)
Q Consensus 164 ~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 192 (202)
..+..+...+|+|.+|++++.++|+++++
T Consensus 78 ~~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 78 ALGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HcCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 55655555689999999999999999875
No 57
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.71 E-value=7.9e-17 Score=97.17 Aligned_cols=70 Identities=39% Similarity=0.592 Sum_probs=63.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCch-hhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPD-NIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 68999999999999999999999999999998754333 47889999999999999999999999999984
No 58
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.70 E-value=9.7e-17 Score=97.65 Aligned_cols=66 Identities=29% Similarity=0.533 Sum_probs=60.2
Q ss_pred cCCCChhhHHHHHHHHHhCCCcEEEEcCCCC--CchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 5 SGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN--KPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 5 ~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
....|+++++++++|+++|++|+.+.++... ..++|.++||.|++|+|+++|.+++||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4678999999999999999999999998753 45789999999999999999999999999999984
No 59
>KOG4244|consensus
Probab=99.70 E-value=6.1e-16 Score=112.25 Aligned_cols=171 Identities=20% Similarity=0.293 Sum_probs=120.6
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCCCCCCCCHHHH
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMR 86 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~l~p~~~~~~ 86 (202)
+.||||.|+...|...+||||.+.... ...++.|++|.++-||..++||.-|...|.+.+.-+..+ ++.++
T Consensus 59 nLSPfClKvEt~lR~~~IpYE~~~~~~-------~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L--~~e~~ 129 (281)
T KOG4244|consen 59 NLSPFCLKVETFLRAYDIPYEIVDCSL-------KRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDL--SAEQR 129 (281)
T ss_pred CCChHHHHHHHHHHHhCCCceeccccc-------eeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCC--CHHHH
Confidence 579999999999999999999987644 235678999999999999999999999999998743322 34555
Q ss_pred HHHHHHHHHHhhhHHHHHHH----------------------------HH-----hc------ccCCCHHHHHHHHHHHH
Q psy3758 87 ARARLMLLNFEKEIFIHLYM----------------------------LE-----NE------RNKTSIKGYKRAREEIR 127 (202)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~----------------------------~~-----~~------~~~~~~~~~~~~~~~~~ 127 (202)
+....+....+..++..+.. +. .. ...-.+=..++..+-+.
T Consensus 130 a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~ 209 (281)
T KOG4244|consen 130 AQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLH 209 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHH
Confidence 55554444333222211111 00 00 00001112233556667
Q ss_pred HHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhc-Ccc----cCCCChhHHHHHHHHhcC
Q psy3758 128 DRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GIN----LSKSASPLIKYAERIFSR 186 (202)
Q Consensus 128 ~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~-~~~----~~~~~p~l~~~~~~~~~~ 186 (202)
+-|..++..|++++|+.|+++|-+|+.+|+.+..+-.- ... +.+++|+|..|++|+++.
T Consensus 210 rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 210 RDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRKE 273 (281)
T ss_pred HHHHHHHHHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence 88899999999999999999999999999988765442 111 346699999999999864
No 60
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.69 E-value=7.9e-16 Score=102.42 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHhc---------ccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHH
Q psy3758 82 DPLMRARARLMLLNFEKEIFIHLYMLENE---------RNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLD 152 (202)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD 152 (202)
++.+++.++.|+.+++..+...+...... .........++..+++.+.|..+|+.|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999888887766554322 123446667888999999999999999888999999999999
Q ss_pred HHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccc
Q psy3758 153 VVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY 189 (202)
Q Consensus 153 ~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 189 (202)
|++++.+.+....+.++...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVVKLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhcCCCCccccHHHHHHHHHHHhccCC
Confidence 9999999888777766656689999999999999975
No 61
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.69 E-value=2.8e-16 Score=104.22 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHH
Q psy3758 81 SDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLW 160 (202)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~ 160 (202)
.++..++.+++|+.+....+.+.+........... +..+...+++.+.|..+|++|++++|++|+++|+||+++++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~ 80 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPE-ESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVR 80 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCc-ccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHH
Confidence 36889999999999999888888776433221111 24677889999999999999999999999999999999999886
Q ss_pred HHhhcCcc--cCCCChhHHHHHHHHhcCcccccc
Q psy3758 161 RLDYYGIN--LSKSASPLIKYAERIFSRPSYMES 192 (202)
Q Consensus 161 ~~~~~~~~--~~~~~p~l~~~~~~~~~~p~~~~~ 192 (202)
++...... ..+.+|+|.+|++++.++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 81 QFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHhhhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 65433211 136689999999999999999875
No 62
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.68 E-value=7.2e-16 Score=103.95 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHh
Q psy3758 84 LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 163 (202)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~ 163 (202)
.+++++..|+.+++..+.+........ .+...+...+++.+.|+.+|++|++++|++|+++|+|||++++.+.++.
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~ 77 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAA----KGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFR 77 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 468999999999988888776655432 2455667788999999999999988999999999999999999887764
Q ss_pred hc----Ccc--cCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 164 YY----GIN--LSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 164 ~~----~~~--~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
.. +.. ..+.+|+|.+|+++++++|+++++++..+..+
T Consensus 78 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~ 120 (126)
T cd03185 78 AYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLV 120 (126)
T ss_pred HHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHH
Confidence 32 333 23558999999999999999999998876543
No 63
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.66 E-value=6e-16 Score=94.01 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=58.7
Q ss_pred CEEecCC-------CChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhc
Q psy3758 1 MVLYSGT-------TCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 72 (202)
Q Consensus 1 ~~Ly~~~-------~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~ 72 (202)
++||.++ .||+|++++++|+++|+||+.+.++.. ..||.|++|+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~-------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP-------WRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc-------ccCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 5788777 999999999999999999999998753 2789999999999999999999999999874
No 64
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.65 E-value=1.1e-15 Score=101.11 Aligned_cols=108 Identities=25% Similarity=0.265 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLENERN-----KTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 159 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l 159 (202)
+++.++.|+.+....+.+....+..... ...+...+...+++.+.+..+|+.|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 5789999999998888877654332211 11244566778899999999999999889999999999999999998
Q ss_pred HHHhhcCcccCCCChhHHHHHHHHhcCccccccc
Q psy3758 160 WRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 193 (202)
Q Consensus 160 ~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 193 (202)
.++...+.. .+.+|+|.+|++++.++|++++++
T Consensus 82 ~~~~~~~~~-~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPGVGLD-LSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhhcCCC-hhhChHHHHHHHHHHhCHHhHhhC
Confidence 877655443 345899999999999999998864
No 65
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.64 E-value=5e-15 Score=98.86 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHHH-Hhcc-cC---------CCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCc
Q psy3758 80 SSDPLMRARARLMLLNFEKEIFIHLYML-ENER-NK---------TSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEF 148 (202)
Q Consensus 80 p~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~---------~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~ 148 (202)
|.++.+++++++|+.+....+.+.+... .... .. ..+...+....++.+.|+.+|++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 5678899999999999888777765432 1111 11 22445556778899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCc
Q psy3758 149 SMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRP 187 (202)
Q Consensus 149 s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p 187 (202)
|+|||++++.+.+....+. ..+.+|+|.+|+++++++|
T Consensus 82 t~ADi~l~~~~~~~~~~~~-~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALARGP-LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHcCc-ccccCchHHHHHHHHhcCC
Confidence 9999999988887765554 3566899999999999986
No 66
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.64 E-value=2.2e-15 Score=100.87 Aligned_cols=111 Identities=12% Similarity=0.083 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhh
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDY 164 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~ 164 (202)
++++++.+.+.+.+............ ..+...+.....+.+.+..+|++|++++|++|+++|+||+++++.+.++..
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~ 78 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSP---DFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRI 78 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCc---chHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHH
Confidence 47788888887764443332222222 124556677888999999999999888999999999999999999988876
Q ss_pred cCcccCCCChhHHHHHHHHhcCccccccccchHh
Q psy3758 165 YGINLSKSASPLIKYAERIFSRPSYMESLTPAEK 198 (202)
Q Consensus 165 ~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 198 (202)
.+....+.+|+|.+|++++.++|++++++++++.
T Consensus 79 ~~~~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 79 FEPDCLDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred hCccccccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 5444456789999999999999999999987753
No 67
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.64 E-value=4.4e-15 Score=102.13 Aligned_cols=110 Identities=21% Similarity=0.300 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHh
Q psy3758 84 LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 163 (202)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~ 163 (202)
..++.++.|+++....+.+....... ..+++..+.....+.+.|+.+|++|++++|++|+++|+|||++++.+.++.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~ 79 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGF---ATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFD 79 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhh---ccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHH
Confidence 45888999999998877776554322 235666778889999999999999998999999999999999999887653
Q ss_pred hc-------CcccCCCChhHHHHHHHHhcCccccccccch
Q psy3758 164 YY-------GINLSKSASPLIKYAERIFSRPSYMESLTPA 196 (202)
Q Consensus 164 ~~-------~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 196 (202)
.. +....+.+|+|.+|+++|.++|++++++...
T Consensus 80 ~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~ 119 (142)
T cd03190 80 AVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFD 119 (142)
T ss_pred HHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHH
Confidence 21 1122356899999999999999999998764
No 68
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.63 E-value=2.1e-15 Score=103.00 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhc--CCCeeecCCchHHHHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWRL 162 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~fl~G~~~s~aD~~l~~~l~~~ 162 (202)
+++.++.+.+.+.+.....+...........+.......+.+.+.|..||+.|+ +++|++|+++|+||+++++.+.++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~ 82 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMV 82 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHH
Confidence 577888888877655544443333221111111123334466799999999998 678999999999999999999887
Q ss_pred hhcCcccCCCChhHHHHHHHHhcCccccccccchH
Q psy3758 163 DYYGINLSKSASPLIKYAERIFSRPSYMESLTPAE 197 (202)
Q Consensus 163 ~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 197 (202)
........+.+|+|.+|++++.++|+++++++++.
T Consensus 83 ~~~~~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 83 EELDPSLLSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHhchhhhccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 66544445678999999999999999999998654
No 69
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.63 E-value=2.2e-15 Score=100.47 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhh
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDY 164 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~ 164 (202)
++++++.|+.++...+...............++..+...+++.+.|..+|+.|++++|++|+++|+||+++++.+.+...
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 47888999888766666554332221100112345667788999999999999888999999999999999999988765
Q ss_pred -cCcccCCCChhHHHHHHHHhcCccccccccch
Q psy3758 165 -YGINLSKSASPLIKYAERIFSRPSYMESLTPA 196 (202)
Q Consensus 165 -~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 196 (202)
.+.+ ...+|+|.+|+++|+++|++++.....
T Consensus 82 ~~~~~-~~~~p~l~~w~~~~~~~p~~~~~~~~~ 113 (118)
T cd03177 82 LLPLD-LSKYPNVRAWLERLKALPPYEEANGKG 113 (118)
T ss_pred hcCCC-hhhCchHHHHHHHHHcccchHHHHHHH
Confidence 3433 345899999999999999999866444
No 70
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.62 E-value=3.2e-15 Score=100.57 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC--CCeeecCCchHHHHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDVVIAPLLWRL 162 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~aD~~l~~~l~~~ 162 (202)
+||+.+.|.+.+...+.+....+. . ++..+...+.+.+.|..+|+.|++ ++|++|+++|+||+++++.+.++
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~ 75 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLG-A-----PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERL 75 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHh-c-----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHH
Confidence 488888899888644333433332 2 334557788899999999999975 89999999999999999988776
Q ss_pred hhcCc-----ccCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 163 DYYGI-----NLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 163 ~~~~~-----~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
...+. ...+.+|+|.+|+++|.++|++++++.+.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~ 118 (124)
T cd03184 76 EALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHA 118 (124)
T ss_pred HHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCCHHHHH
Confidence 54432 124668999999999999999999998877554
No 71
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.61 E-value=5.9e-15 Score=98.81 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHH----HHHHhcccCC-CHHHHHHHHHHHHHHHHHhcchhc--CCCeeecCCchHHHHHHH
Q psy3758 84 LMRARARLMLLNFEKEIFIHL----YMLENERNKT-SIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIA 156 (202)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~--~~~fl~G~~~s~aD~~l~ 156 (202)
.+++++++|+.+++..+.+.. .......... .....+...+.+.+.|..+|++|+ .++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 468999999999887665431 1111111011 223334456778999999999997 457999999999999999
Q ss_pred HHHHHHhhcCcccCCCChhHHHHHHHHhcCccccccccc
Q psy3758 157 PLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTP 195 (202)
Q Consensus 157 ~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 195 (202)
+.+.+....+.++ +.+|+|.+|++++.++|+++++.+.
T Consensus 82 ~~~~~~~~~~~~~-~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 82 PQVYNARRFGVDL-SPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred HHHHHHHHhCCCc-ccCcHHHHHHHHHHhChhHHHhCcC
Confidence 9988776555543 5679999999999999999998764
No 72
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.61 E-value=1.4e-15 Score=100.64 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH---hcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLE---NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR 161 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~ 161 (202)
+++.++.|+.+.+..+.+.+.... .......+...+...+++.+.|+.+|+.|++++|++|+++|+|||++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~ 80 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRR 80 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence 367888888887766665433211 11123345567788899999999999999988999999999999999999988
Q ss_pred HhhcCcccCCCChhHHHHHHHHhcCcccccccc
Q psy3758 162 LDYYGINLSKSASPLIKYAERIFSRPSYMESLT 194 (202)
Q Consensus 162 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 194 (202)
....+....+.+|++.+|++++.++|+++++++
T Consensus 81 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 113 (113)
T cd03178 81 LEWIGIDDLDDFPNVKRWLDRIAARPAVQRGLA 113 (113)
T ss_pred HHhccccchhhchHHHHHHHHHhhCHHHHHhcC
Confidence 766654445668999999999999999998753
No 73
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.60 E-value=7.2e-15 Score=98.84 Aligned_cols=99 Identities=15% Similarity=0.290 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC----------------CCeeecCCchHHHHHHHHHHHHH
Q psy3758 99 EIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK----------------NKYMLGDEFSMLDVVIAPLLWRL 162 (202)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~fl~G~~~s~aD~~l~~~l~~~ 162 (202)
.+++.+..+... .+++..+.....+.+.|..||.+|++ ++|++|+++|+|||.+++.+.++
T Consensus 10 ~~f~~~~~~~~~---~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~ 86 (134)
T cd03198 10 DIFAKFSAYIKN---SNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIV 86 (134)
T ss_pred HHHHHHHHHHcC---CChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 566666666544 34566677778899999999999976 67999999999999999998766
Q ss_pred hhc-----CcccCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 163 DYY-----GINLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 163 ~~~-----~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
... +..++..+|+|.+|++++.+||++++++...+.++
T Consensus 87 ~~~~~~~~g~~i~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~ 129 (134)
T cd03198 87 KVVAKKYRNFEIPADLTGLWRYLKNAYQREEFTNTCPADQEIE 129 (134)
T ss_pred HHHHHhhcCCCccccCHHHHHHHHHHHCCHHHHHHcCCHHHHH
Confidence 432 55555678999999999999999999999887665
No 74
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.60 E-value=7.8e-15 Score=98.90 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC---CCeeecCCchHHHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK---NKYMLGDEFSMLDVVIAPLLWR 161 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~fl~G~~~s~aD~~l~~~l~~ 161 (202)
+++.++.+.+.+.+.. ..+..+... ......+.....+.+.|..+|+.|++ ++|++|+++|+||+++++.+.+
T Consensus 3 e~~~vd~~~~~~~d~~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~ 78 (126)
T cd03210 3 EAALIDMVNDGVEDLR-LKYVRMIYQ---NYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDI 78 (126)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHH
Confidence 5778888877765333 333332221 12344566777889999999999974 5899999999999999999887
Q ss_pred HhhcCcccCCCChhHHHHHHHHhcCccccccccchHh
Q psy3758 162 LDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEK 198 (202)
Q Consensus 162 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 198 (202)
+........+.+|+|.+|++++.++|+++++++.+..
T Consensus 79 ~~~~~~~~~~~~P~l~~~~~rv~~~p~v~~~~~~~~~ 115 (126)
T cd03210 79 HLVLAPGCLDAFPLLKAFVERLSARPKLKAYLESDAF 115 (126)
T ss_pred HHHhChHhhhcChHHHHHHHHHHhCcHHHHHHhCcCC
Confidence 7654333456789999999999999999999877653
No 75
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.60 E-value=9.2e-15 Score=97.34 Aligned_cols=109 Identities=22% Similarity=0.186 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH-----Hhc--ccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYML-----ENE--RNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP 157 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~ 157 (202)
+++.+..|+.+....+.+.+... ... ....+....+...+.+.+.|+.+|++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 47778888887665554443321 111 12345666677889999999999999998999999999999999999
Q ss_pred HHHHHhhcCc-ccCCCChhHHHHHHHHhcCccccccc
Q psy3758 158 LLWRLDYYGI-NLSKSASPLIKYAERIFSRPSYMESL 193 (202)
Q Consensus 158 ~l~~~~~~~~-~~~~~~p~l~~~~~~~~~~p~~~~~~ 193 (202)
.+.+....+. ...+.+|+|.+|++++.++|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMATPFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHccchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 8876654322 22456899999999999999998764
No 76
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-14 Score=106.32 Aligned_cols=188 Identities=18% Similarity=0.303 Sum_probs=134.3
Q ss_pred EEecCCCChhhHHHHHHHHHhCCC--cEEEEcCC--CCCc----------------------hhhhhhCC----CCCccE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMD--FEIRDIDL--FNKP----------------------DNIFRMNP----YGQVPI 51 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~--~~~~~~~~--~~~~----------------------~~~~~~~p----~~~vP~ 51 (202)
.||.+-.|||+++..++-+++|++ .....+.+ .... .-|.+..| .-+||+
T Consensus 53 hLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVPV 132 (324)
T COG0435 53 HLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVPV 132 (324)
T ss_pred EEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEEE
Confidence 489999999999999999999997 22222222 1110 11112223 236999
Q ss_pred EEeCC---EEecchHHHHHHHHhcCC-----CCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHH
Q psy3758 52 LVERD---LILYESNIINEYIDERFP-----YPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAR 123 (202)
Q Consensus 52 L~~~~---~~~~es~aI~~yL~~~~~-----~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (202)
|.|.. .+-.||..|++.+...+. ...++|. .-+.+++.+.+++...+- ...+..+.....++.++..
T Consensus 133 LwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~Iy~~vN---NGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 133 LWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWIYDTVN---NGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhhccccc---CceeeecccchHHHHHHHH
Confidence 99764 456799999999986653 2246664 347777777775533221 2233344455677888889
Q ss_pred HHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhc-------CcccCCCChhHHHHHHHHhcCcccccccc
Q psy3758 124 EEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-------GINLSKSASPLIKYAERIFSRPSYMESLT 194 (202)
Q Consensus 124 ~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~-------~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 194 (202)
.++-..|+.+|..|+++.|++|+++|-||+-|++.|.++..+ +..-..++|+|..|...+...|.|+.++.
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~d 285 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVD 285 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccccc
Confidence 999999999999999999999999999999999999777554 11112338999999999999999999874
No 77
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.59 E-value=7.5e-15 Score=98.54 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLENE---RNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR 161 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~ 161 (202)
+++.++.|+.+....+.+.+...... ....+....+...+++.+.|+.+|+.|+.++|+.|+++|+||+++++.+.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~ 80 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLL 80 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHH
Confidence 36788999998887777766543321 123345667788899999999999999988999999999999999998887
Q ss_pred Hhhc--CcccCCCChhHHHHHHHHhcCccccccccchHhh
Q psy3758 162 LDYY--GINLSKSASPLIKYAERIFSRPSYMESLTPAEKI 199 (202)
Q Consensus 162 ~~~~--~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 199 (202)
.... +....+.+|++.+|++++.++|++++++++.+..
T Consensus 81 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~ 120 (123)
T cd03181 81 GFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEVKLC 120 (123)
T ss_pred HHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCCCcC
Confidence 6443 2223356899999999999999999998776543
No 78
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.58 E-value=1.2e-14 Score=97.98 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH--------HhcccCCCHHHHHHHHHHHHHHHHHhcchh-cCCCeeecCCchHHHHHHH
Q psy3758 86 RARARLMLLNFEKEIFIHLYML--------ENERNKTSIKGYKRAREEIRDRLITLAPLF-LKNKYMLGDEFSMLDVVIA 156 (202)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~le~~L-~~~~fl~G~~~s~aD~~l~ 156 (202)
++.+++|+.+....+....... ........+...+...+.+.+.++.+|+++ ++++|++|+++|+|||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 4566777776655554432210 011123456677788899999999999975 5578999999999999999
Q ss_pred HHHHHHhhcCcccCCCChhHHHHHHHHhc--Cccccccc
Q psy3758 157 PLLWRLDYYGINLSKSASPLIKYAERIFS--RPSYMESL 193 (202)
Q Consensus 157 ~~l~~~~~~~~~~~~~~p~l~~~~~~~~~--~p~~~~~~ 193 (202)
+.+.+....+.+..+.+|+|.+|++++.+ +|+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 82 CEIMQPEAAGYDVFEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHhcCCcccccCchHHHHHHHHHHhcchhHHHHH
Confidence 98887776666555678999999999999 99998865
No 79
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.58 E-value=4.4e-14 Score=92.86 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHh-----cccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLEN-----ERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 159 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l 159 (202)
+|++++.|+.+....+.+.+..... ..........+...+++.+.|+.+|++|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4788899998887777766544321 11223455667788999999999999999889999999999999999887
Q ss_pred HHHhhcCcccCCCChhHHHHHHHHhcCccc
Q psy3758 160 WRLDYYGINLSKSASPLIKYAERIFSRPSY 189 (202)
Q Consensus 160 ~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 189 (202)
......+. ....+|+|.+|++++.++|++
T Consensus 82 ~~~~~~~~-~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFELPI-ERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHccc-ccccCchHHHHHHHHHhCCCC
Confidence 54333332 246689999999999999985
No 80
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.56 E-value=4.6e-14 Score=94.25 Aligned_cols=82 Identities=21% Similarity=0.440 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcchhcC-CCeeecCCchHHHHHHHHHHHHHhhc-----CcccCCCChhHHHHHHHHhcCccccccc
Q psy3758 120 KRAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWRLDYY-----GINLSKSASPLIKYAERIFSRPSYMESL 193 (202)
Q Consensus 120 ~~~~~~~~~~l~~le~~L~~-~~fl~G~~~s~aD~~l~~~l~~~~~~-----~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 193 (202)
+...+++.+.|..||..|++ ++|++|+++|+||+++++.+.++... +..+.+.+|+|.+|++++.+||+|++++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~ 108 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcC
Confidence 44567788999999999985 79999999999999999977655432 3334467899999999999999999999
Q ss_pred cchHhhhc
Q psy3758 194 TPAEKIMR 201 (202)
Q Consensus 194 ~~~~~~~~ 201 (202)
+.+.+.++
T Consensus 109 ~~~~~~~~ 116 (121)
T cd03201 109 AEKEDVIA 116 (121)
T ss_pred CCHHHHHH
Confidence 98877664
No 81
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.56 E-value=1.4e-13 Score=91.93 Aligned_cols=107 Identities=19% Similarity=0.360 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHH-HHHhcccCCCHHHHHHHHHHHHHHHHHhcchhc---CCCeeecCCchHHHHHHHH
Q psy3758 82 DPLMRARARLMLLNFEKEIFIHLY-MLENERNKTSIKGYKRAREEIRDRLITLAPLFL---KNKYMLGDEFSMLDVVIAP 157 (202)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~fl~G~~~s~aD~~l~~ 157 (202)
|+.+|+.+++++.+.. .+...+. .+..+ . . .+++.+.++.||+.|+ +++|++| ++|+|||++++
T Consensus 1 d~~~ra~~~~~~~~~~-~~~~~~~~~~~~~--~-~-------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~ 68 (120)
T cd03203 1 DPAKREFADELLAYTD-AFTKALYSSLIKG--D-P-------SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVP 68 (120)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHhcC--C-c-------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHH
Confidence 4678999999988832 2222221 22211 1 1 1223455666666665 4789999 99999999999
Q ss_pred HHHHHhh-----cCcccCCCChhHHHHHHHHhcCccccccccchHhhh
Q psy3758 158 LLWRLDY-----YGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIM 200 (202)
Q Consensus 158 ~l~~~~~-----~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 200 (202)
.+.++.. .+.++.+.+|+|.+|+++|.++|+++++.++.++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~ 116 (120)
T cd03203 69 FIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDPQELL 116 (120)
T ss_pred HHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCHHHHH
Confidence 8876542 355555678999999999999999999999877654
No 82
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.54 E-value=2.9e-14 Score=91.26 Aligned_cols=73 Identities=26% Similarity=0.454 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCcccC-CCChhHHHHHHHHhcCc
Q psy3758 115 SIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLS-KSASPLIKYAERIFSRP 187 (202)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~-~~~p~l~~~~~~~~~~p 187 (202)
.++..+....++.+.|+.+|+.|++++|++|+++|+||+++++.+.++...+.... +.+|+|.+|++++.++|
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHcCC
Confidence 45567788899999999999999999999999999999999999999999887776 78999999999999987
No 83
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.52 E-value=7.3e-14 Score=92.45 Aligned_cols=107 Identities=22% Similarity=0.235 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHhcchhc-CCCeeecCCchHHHHHHHHHH
Q psy3758 84 LMRARARLMLLNFEKEIFIHLYMLENE---RNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAPLL 159 (202)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~fl~G~~~s~aD~~l~~~l 159 (202)
.+++++..|+.++...+.+........ .....+...+.....+.+.+..+|..|+ +++|++| ++|+||+++++.+
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 578999999999999888763211100 0011223456777888888999999995 4589999 6999999999999
Q ss_pred HHHhhcCcccCCCChhHHHHHHHHhcCcccccccc
Q psy3758 160 WRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 194 (202)
Q Consensus 160 ~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 194 (202)
.+....|.++. |++.+|.+|+.+||+|++.++
T Consensus 81 ~~~~~~g~~l~---p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVLNGDPVP---ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHHCCHHHHHHHh
Confidence 99998887763 999999999999999999875
No 84
>KOG2903|consensus
Probab=99.52 E-value=2.8e-14 Score=103.20 Aligned_cols=187 Identities=19% Similarity=0.266 Sum_probs=130.7
Q ss_pred EecCCCChhhHHHHHHHHHhCCC----cEEEEcCCCCCchhhhh------------------------------hCC---
Q psy3758 3 LYSGTTCPFSQRCRLVLFEKGMD----FEIRDIDLFNKPDNIFR------------------------------MNP--- 45 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~gi~----~~~~~~~~~~~~~~~~~------------------------------~~p--- 45 (202)
||..-.|||++++.++++.+|++ +-.+.--.++....|.. ..|
T Consensus 40 LYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~Y~ 119 (319)
T KOG2903|consen 40 LYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPNYT 119 (319)
T ss_pred EEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCCCC
Confidence 78889999999999999999986 22222201111111111 112
Q ss_pred -CCCccEEEeCC---EEecchHHHHHHHHhcC---------CCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Q psy3758 46 -YGQVPILVERD---LILYESNIINEYIDERF---------PYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERN 112 (202)
Q Consensus 46 -~~~vP~L~~~~---~~~~es~aI~~yL~~~~---------~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (202)
.=+||+|-|-. .+-.||..|++.+...+ +.-.|.|. ..++.++.+.+++...+-. ..+..+.
T Consensus 120 grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~--~L~~~Ide~N~wvy~~INN---GVYk~GF 194 (319)
T KOG2903|consen 120 GRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS--SLRAQIDETNSWVYDKINN---GVYKCGF 194 (319)
T ss_pred ceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH--HHHHHHhhhhceecccccC---ceeeecc
Confidence 12699999764 46689999999998322 22235664 3477778777765433222 2233334
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhcCCC--eeecCCchHHHHHHHHHHHHHhhcC--------cccCCCChhHHHHHHH
Q psy3758 113 KTSIKGYKRAREEIRDRLITLAPLFLKNK--YMLGDEFSMLDVVIAPLLWRLDYYG--------INLSKSASPLIKYAER 182 (202)
Q Consensus 113 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~--fl~G~~~s~aD~~l~~~l~~~~~~~--------~~~~~~~p~l~~~~~~ 182 (202)
....+..+....++-+.|+.+|..|+++. |++|+++|.|||.|++.+-++..+- ..+.++||+|..|...
T Consensus 195 A~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~ 274 (319)
T KOG2903|consen 195 AEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKN 274 (319)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHH
Confidence 45667788888888999999999999866 9999999999999999886665431 2345689999999999
Q ss_pred Hhc-Ccccccccc
Q psy3758 183 IFS-RPSYMESLT 194 (202)
Q Consensus 183 ~~~-~p~~~~~~~ 194 (202)
+.. .|+++.++.
T Consensus 275 iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 275 IYWNIPGFSSTTD 287 (319)
T ss_pred HHhhccchhhccc
Confidence 998 899988764
No 85
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.50 E-value=1.5e-13 Score=87.92 Aligned_cols=96 Identities=13% Similarity=0.166 Sum_probs=73.4
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeec
Q psy3758 66 NEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLG 145 (202)
Q Consensus 66 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G 145 (202)
+|||.+.. .+.|.++.+.+.++.|++.+...+. .....++.+.+..+|++|++++|++|
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~------------------~~~~~~~~~~l~~le~~L~~~~fl~G 59 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLA------------------EGSSKEKAAVLRALNSALGRSPWLVG 59 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHcCCCccCC
Confidence 47888873 3899999999999999996543222 01233444677788999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcC
Q psy3758 146 DEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSR 186 (202)
Q Consensus 146 ~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~ 186 (202)
+++|+|||++++.+.+. +.. .+.+|+|.+|++++.++
T Consensus 60 d~~tiADi~l~~~l~~~---~~~-~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 60 SEFTVADIVSWCALLQT---GLA-SAAPANVQRWLKSCENL 96 (96)
T ss_pred CCCCHHHHHHHHHHHHc---ccc-cccChHHHHHHHHHHhC
Confidence 99999999999888653 222 24589999999999864
No 86
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.50 E-value=3.5e-14 Score=92.33 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccccccccc
Q psy3758 117 KGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTP 195 (202)
Q Consensus 117 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 195 (202)
+..+...+++.+.++.+|++|++++|++|+++|+|||++++.+.+....+ ....+|+|++|++++.++|+++++.+.
T Consensus 26 ~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 26 PARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG--LLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred chhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC--CCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 34566778899999999999998899999999999999999998877654 235689999999999999999988754
No 87
>KOG3027|consensus
Probab=99.49 E-value=2.6e-12 Score=90.04 Aligned_cols=168 Identities=19% Similarity=0.213 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcCCCCCCCC-CCHHHHHHH
Q psy3758 11 FSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS-SDPLMRARA 89 (202)
Q Consensus 11 ~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~l~p-~~~~~~a~~ 89 (202)
-|..|...|.++++||.++..+ +++| ++|.|+||.|..|.+.++|-.+|..+.+.+- -.+.. -+..+++.+
T Consensus 36 scLAVqtfLrMcnLPf~v~~~~----Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~--~~l~s~lsE~qkadm 107 (257)
T KOG3027|consen 36 SCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKG--VTLTSWLSEDQKADM 107 (257)
T ss_pred hHHHHHHHHHHcCCCceeeecC----Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhc--cchhhhhhhHHHHHH
Confidence 4789999999999999998753 4555 7899999999999999999999999998873 22322 355667777
Q ss_pred HHHHHHHhhhHH--------------HHHHHHH------------------------hcccCCCHHHHHHHHHHHHHHHH
Q psy3758 90 RLMLLNFEKEIF--------------IHLYMLE------------------------NERNKTSIKGYKRAREEIRDRLI 131 (202)
Q Consensus 90 ~~~~~~~~~~~~--------------~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~l~ 131 (202)
+..++.++..+. ..+.... .....+++...++..+++.++++
T Consensus 108 ra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~~ 187 (257)
T KOG3027|consen 108 RAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCCR 187 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHH
Confidence 766554432211 1111000 01236777888999999999999
Q ss_pred HhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCc------ccCCCChhHHHHHHHHhcC
Q psy3758 132 TLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGI------NLSKSASPLIKYAERIFSR 186 (202)
Q Consensus 132 ~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~------~~~~~~p~l~~~~~~~~~~ 186 (202)
.|..+|+.++||.|+.||-.|..+|+.+..+-.... .....|++|-+++.|+.++
T Consensus 188 aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 188 ALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999998876544322 1235589999999998753
No 88
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.47 E-value=1.8e-13 Score=88.54 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccc
Q psy3758 118 GYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY 189 (202)
Q Consensus 118 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 189 (202)
..+...+++.+.++.+|+.|++++|++|+++|+||+.+++.+.+....+. ..+.+|+|.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPEGGV-DLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhccCC-ChhhCcHHHHHHHHHHhCcCC
Confidence 45677889999999999999999999999999999999998866544332 235689999999999999975
No 89
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.45 E-value=4.7e-13 Score=87.34 Aligned_cols=75 Identities=23% Similarity=0.439 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhcCC----------CeeecCCchHHHHHHHHHHHHHhhcCccc----CCCChhHHHHH
Q psy3758 115 SIKGYKRAREEIRDRLITLAPLFLKN----------KYMLGDEFSMLDVVIAPLLWRLDYYGINL----SKSASPLIKYA 180 (202)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~le~~L~~~----------~fl~G~~~s~aD~~l~~~l~~~~~~~~~~----~~~~p~l~~~~ 180 (202)
+....++...++.+.|..+|.+|+++ +|++|+++|+|||++++.+.++...+.+. ...+|+|.+|+
T Consensus 23 ~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~ 102 (111)
T cd03204 23 NVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYF 102 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHH
Confidence 56677889999999999999999764 49999999999999999998887655443 24689999999
Q ss_pred HHHhcCccc
Q psy3758 181 ERIFSRPSY 189 (202)
Q Consensus 181 ~~~~~~p~~ 189 (202)
+++.+||+|
T Consensus 103 ~rv~aRpsf 111 (111)
T cd03204 103 ERVLQRESF 111 (111)
T ss_pred HHHHcCCCC
Confidence 999999985
No 90
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.45 E-value=4.9e-13 Score=80.47 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=50.1
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhc
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 72 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~ 72 (202)
+.+++|.+++++|.+.|+||+.+.... .+ ..+|.|+||+|++||.+++||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~----~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN----AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC----cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 467889999999999999999884321 11 1678899999999999999999999999763
No 91
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.42 E-value=6.6e-13 Score=79.85 Aligned_cols=66 Identities=30% Similarity=0.573 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCc--ccCCCChhHHHHHHH
Q psy3758 117 KGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGI--NLSKSASPLIKYAER 182 (202)
Q Consensus 117 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~~~p~l~~~~~~ 182 (202)
...++..+++.+.|+.+|.+|++++|+.|++||+||+.+++.+.++...+. .+...+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 457788999999999999999999999999999999999999999888754 345779999999986
No 92
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.42 E-value=1.7e-12 Score=85.83 Aligned_cols=73 Identities=23% Similarity=0.445 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCcccccccc
Q psy3758 118 GYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 194 (202)
Q Consensus 118 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 194 (202)
.......++.+.++.+.+.+++++|++|+ +|+||+++++.+.+....+.+. . |+|.+|++++.++|++++++.
T Consensus 41 ~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~~~--~-P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 41 AVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYGLPL--S-PAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcCCCC--C-HHHHHHHHHHHCCHHHHHHHh
Confidence 33334444444444444434467899999 9999999999998887665442 2 999999999999999999874
No 93
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.42 E-value=5.2e-13 Score=86.97 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHh-----cccCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLEN-----ERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 159 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l 159 (202)
+++++++|+.+....+.+....+.. +.....++..+....++.+.++.+|..|++++|+.|+++|+|||++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 4788899998876666655433211 12344566778899999999999999998889999999999999999999
Q ss_pred HHHhhcCcccCCCChhHHHHHHHHh
Q psy3758 160 WRLDYYGINLSKSASPLIKYAERIF 184 (202)
Q Consensus 160 ~~~~~~~~~~~~~~p~l~~~~~~~~ 184 (202)
.++...+.+ ...+|+|.+|+++++
T Consensus 82 ~~~~~~~~~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADEGGFD-LADYPAIRAWLARIE 105 (105)
T ss_pred HhccccCCC-hHhCccHHHHHHhhC
Confidence 887666554 455899999999874
No 94
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.38 E-value=5.3e-12 Score=82.14 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHhcchhcC--CCeeecCCchHHHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLENER-NKTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDVVIAPLLWR 161 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~aD~~l~~~l~~ 161 (202)
++++++.+++.+++........++... ....+...+...+.+.+.+..+|+.|++ ++|++|+++|+||+++++.+.+
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~ 81 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDY 81 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHH
Confidence 477888888886544444444333211 0123666778889999999999999987 8999999999999999999988
Q ss_pred HhhcCccc-CCCChhHHHHHHHH
Q psy3758 162 LDYYGINL-SKSASPLIKYAERI 183 (202)
Q Consensus 162 ~~~~~~~~-~~~~p~l~~~~~~~ 183 (202)
+...+... ...+|+|.+|++++
T Consensus 82 ~~~~~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 82 LLYLDPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHhhCchhhHHhChhHHHHHHhC
Confidence 87766544 56689999999875
No 95
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.36 E-value=3.6e-12 Score=78.65 Aligned_cols=70 Identities=21% Similarity=0.383 Sum_probs=62.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
++||+.++||+|++++.+|...|++|+.+.++......++...++..++|++..||..+.++..|.+||+
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 5899999999999999999999999999998766555566677788999999999999999999999984
No 96
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.27 E-value=1.8e-11 Score=82.15 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhc-CcccCCCChhHHHHHHHHhcC
Q psy3758 119 YKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFSR 186 (202)
Q Consensus 119 ~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~-~~~~~~~~p~l~~~~~~~~~~ 186 (202)
.+...+.+.+.|+.+|++|++++|+.|+++|+||+++++.+.+.... +.++.+.+|+|.+|++||.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhcC
Confidence 45777889999999999999999999999999999999999888765 555556789999999999863
No 97
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.23 E-value=2.5e-11 Score=78.03 Aligned_cols=69 Identities=33% Similarity=0.531 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCcc--cCCCChhHHHHHHHH
Q psy3758 115 SIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN--LSKSASPLIKYAERI 183 (202)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~--~~~~~p~l~~~~~~~ 183 (202)
.+...+...+.+.+.++.+|+.|++++|+.|+++|+||+++++.+.++...... +.+.+|+|.+|++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 30 DEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 466778888999999999999999999999999999999999999988776544 246689999999875
No 98
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.21 E-value=3.7e-11 Score=77.45 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhcchhcCCC--eeecCCchHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhc
Q psy3758 117 KGYKRAREEIRDRLITLAPLFLKNK--YMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFS 185 (202)
Q Consensus 117 ~~~~~~~~~~~~~l~~le~~L~~~~--fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~ 185 (202)
...+...+++.+.|..++++|++++ |++|++||+||+.+++.+..... . .+++.+|+|.+|++||.+
T Consensus 31 ~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~-~-~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 31 ASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW-A-DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC-C-HHTTTCHHHHHHHHHHHT
T ss_pred hhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh-c-ccccccHHHHHHHHhhcC
Confidence 4567778889999999999998866 99999999999999998866652 2 334678999999999974
No 99
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.21 E-value=9e-11 Score=71.06 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=60.8
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
++||+.++||+|.+++.+|...|++|+.+.++......++........+|++..||..+.++..|.+||+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 5899999999999999999999999999998765433445556778899999999999999999999984
No 100
>PRK10638 glutaredoxin 3; Provisional
Probab=99.20 E-value=8.9e-11 Score=73.11 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=62.3
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDE 71 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~ 71 (202)
++||+.++||||++++.+|..+|++|+.+.++... ..+++.+.++.+++|++..||..+.+...+..+-.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 58999999999999999999999999999997653 456788889999999999999999998887776544
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.18 E-value=1.1e-10 Score=73.62 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCcc------cCCCChhHHHHHHHHh
Q psy3758 120 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN------LSKSASPLIKYAERIF 184 (202)
Q Consensus 120 ~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~------~~~~~p~l~~~~~~~~ 184 (202)
....+++.+.++.+|+.|++++|++|+++|+||+++++.+.++...+.. ..+.+|+|++|++++.
T Consensus 18 ~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 18 REIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 3667888999999999999999999999999999999998877643211 1345899999999974
No 102
>KOG3028|consensus
Probab=99.07 E-value=5.1e-08 Score=73.15 Aligned_cols=173 Identities=18% Similarity=0.144 Sum_probs=117.3
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE-eCCEEecchHHHHHHHHhcCCCCCCCCC-CHH
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSS-DPL 84 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~~~es~aI~~yL~~~~~~~~l~p~-~~~ 84 (202)
..++-|..+.+++..++-|.+++..+-.. ..|.|++|+|+ ++|+.+++-..|..+|.+.-.+-.+-+. ...
T Consensus 15 tid~~sL~~l~y~kl~~~~l~v~~ssN~~-------~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~k 87 (313)
T KOG3028|consen 15 TIDPDSLAALIYLKLAGAPLKVVVSSNPW-------RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAK 87 (313)
T ss_pred CcChhHHHHHHHHHHhCCCceeEeecCCC-------CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHH
Confidence 45788999999999999666555543211 46789999999 6679999999999999884212112221 234
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH---------------h-------c-----------------ccCCCHHHHHHHHHH
Q psy3758 85 MRARARLMLLNFEKEIFIHLYMLE---------------N-------E-----------------RNKTSIKGYKRAREE 125 (202)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~---------------~-------~-----------------~~~~~~~~~~~~~~~ 125 (202)
+.+....++..++..+.+...... . + .........++....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 566666676666555444433100 0 0 012222345566667
Q ss_pred HHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCcc------cCCCChhHHHHHHHHhcC
Q psy3758 126 IRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN------LSKSASPLIKYAERIFSR 186 (202)
Q Consensus 126 ~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~------~~~~~p~l~~~~~~~~~~ 186 (202)
..+++..+...|+.++|+.|++||--|..++..+..+.....+ ....+++|.+|++++++.
T Consensus 168 Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 168 ASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHH
Confidence 7789999999999999999999999999999988774433211 112379999999998763
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.03 E-value=1.6e-09 Score=65.47 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=50.8
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhc
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 72 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~ 72 (202)
+.||+|.++.++|...|+||+.+...- -...|.|++|+|+++|..+.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 567999999999999999998875432 12568999999999999999999999999864
No 104
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.03 E-value=2.3e-09 Score=68.93 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=57.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhc--CcccCCCChhHHHHHHHH
Q psy3758 112 NKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY--GINLSKSASPLIKYAERI 183 (202)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~--~~~~~~~~p~l~~~~~~~ 183 (202)
....+...+.....+.+.|..+|++|++++| +++|+|||++++.+.+.... +......+|+|.+|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 28 EKRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 4556778889999999999999999988888 89999999999999877643 333346689999999985
No 105
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.99 E-value=1.9e-09 Score=65.41 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=56.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEecchHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINE 67 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~ 67 (202)
++||+.+.||+|++++.+|..+||+|+.+.++... ..+++.++++.+++|++..||..+.+.....+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 58999999999999999999999999999887542 34578888999999999999988877665543
No 106
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.97 E-value=2e-09 Score=66.50 Aligned_cols=61 Identities=20% Similarity=0.480 Sum_probs=49.0
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecc
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYE 61 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~e 61 (202)
++||+.++||+|.+++-+|..+||+|+.+.++......+....++..+||+++.++..+..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~G 63 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEec
Confidence 5899999999999999999999999999998754322333444688999999988765443
No 107
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.97 E-value=6.5e-09 Score=66.70 Aligned_cols=108 Identities=25% Similarity=0.272 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHH-----HHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC-CCeeecCCchHHHHHH
Q psy3758 82 DPLMRARARLMLLNFEKEIFIHLYM-----LENERNKTSIKGYKRAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVVI 155 (202)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~G~~~s~aD~~l 155 (202)
|..+|++++.+..++-.++.+.-.- .+.+ .......+.+...+.+.+...+..|.. ++||.| +.|+||..+
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~--~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFG-ewsIAD~dl 77 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRG--ARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFG-EWSIADADL 77 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS----------HHHHHHHHHHHHHHHHHTTT--SSTTS-S--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHhccCCCCccc-cchHHHHHH
Confidence 4568999999999888777766443 1111 223445666777777778888888876 789998 899999999
Q ss_pred HHHHHHHhhcCcccCCCChhHHHHHHHHhcCccccccccc
Q psy3758 156 APLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTP 195 (202)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 195 (202)
++.+.++...|.+++ +++.+|.++.-++|+|++.++-
T Consensus 78 A~ml~Rl~~~gd~vP---~~l~~Ya~~qwqrpsVQ~Wla~ 114 (117)
T PF14834_consen 78 ALMLNRLVTYGDPVP---ERLADYAERQWQRPSVQRWLAL 114 (117)
T ss_dssp HHHHHHHHTTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHHCCHHHHHHHHH
Confidence 999999999888777 6799999999999999988753
No 108
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.95 E-value=4.1e-09 Score=63.35 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=58.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEecchHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEY 68 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~y 68 (202)
+++|+.++||+|++++.+|..+|++|+.+.++... ...++.+.++..++|++..||..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 58999999999999999999999999988886543 345677788999999999999999999887764
No 109
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.91 E-value=5.7e-09 Score=71.08 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcchhc-CCCeeecCCchHHHHHHHHHHHHHhhc-CcccCCCChhHHHHHHHHhc
Q psy3758 122 AREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFS 185 (202)
Q Consensus 122 ~~~~~~~~l~~le~~L~-~~~fl~G~~~s~aD~~l~~~l~~~~~~-~~~~~~~~p~l~~~~~~~~~ 185 (202)
.++.+...++.+-+.++ +++|+.|++||+|||.+++.+..+... +......+|+|.+|++||.+
T Consensus 80 ~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 80 VREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHH
Confidence 34445555554444454 478999999999999999999888777 55223457999999999986
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.91 E-value=6.4e-09 Score=62.88 Aligned_cols=69 Identities=19% Similarity=0.442 Sum_probs=55.5
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEe--cchHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLIL--YESNIINEYI 69 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~--~es~aI~~yL 69 (202)
|+||+.++||+|++++..|...|++|..+.++... ..+++.+.++.+.+|+++.+|..+ ++...|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 58999999999999999999999999988776542 234567778999999999888776 5555565554
No 111
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.90 E-value=4.2e-09 Score=71.76 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCcc------cCCCChhHHHHHHHHhc
Q psy3758 116 IKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN------LSKSASPLIKYAERIFS 185 (202)
Q Consensus 116 ~~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~------~~~~~p~l~~~~~~~~~ 185 (202)
....+...+...+.++.+++.|++++|+.|+++|.+|+.+++.+..+.....+ ....+|+|.+|++||.+
T Consensus 59 ~~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 59 TEVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 34567778888899999999999999999999999999999988766532221 23458999999999975
No 112
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.89 E-value=5.3e-09 Score=63.12 Aligned_cols=62 Identities=27% Similarity=0.486 Sum_probs=52.4
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEecch
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYES 62 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~es 62 (202)
+++|+.++||+|++++.+|...|++|..+.++... ..+++.+.||.+.+|+++++|..+.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 58999999999999999999999999999887642 345677888999999999888666543
No 113
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.86 E-value=3.8e-09 Score=70.99 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhc-----Cc-ccCCCChhHHHHHHHHh
Q psy3758 117 KGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-----GI-NLSKSASPLIKYAERIF 184 (202)
Q Consensus 117 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~-----~~-~~~~~~p~l~~~~~~~~ 184 (202)
...+...+.+.+.|+.|+..|++++|++|++||.+|+.+++.+.++... .. .....+|+|.+|++||.
T Consensus 53 ~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 53 KTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 3556777888899999999999999999999999999999998766532 11 12345899999999973
No 114
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.85 E-value=1.6e-08 Score=61.57 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=56.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC-CCchhhhhhCCCC-CccEEEeCCEEecchHHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF-NKPDNIFRMNPYG-QVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~-~~~~~~~~~~p~~-~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
|+||+.+.||+|.+++.+|...|++|+.+.++.. ....++.+..... .+|++..+|..+.+...+.++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 5899999999999999999999999999988754 1223344444444 89999999999999988887653
No 115
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.82 E-value=1.2e-08 Score=61.62 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=46.1
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCE
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDL 57 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~ 57 (202)
|+||+.++||+|++++-+|..+|++|+.+.++......+.+...+...||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 689999999999999999999999999999876433333334457779999997553
No 116
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.82 E-value=1.4e-08 Score=62.12 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=53.7
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCC-chhhhhhC-CCCCccEEE-eCCEEecchH--HHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNK-PDNIFRMN-PYGQVPILV-ERDLILYESN--IINEYI 69 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~-p~~~vP~L~-~~~~~~~es~--aI~~yL 69 (202)
|+||+.++||+|++++..|...|++|+.+.++.... .+++.++| +...+|+++ ++|..+.+.. .++.+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 589999999999999999999999999888765433 34555676 889999997 6777766653 355554
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.81 E-value=2.9e-08 Score=61.09 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=59.8
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDE 71 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~ 71 (202)
+++|+.++||+|.+++-+|..+|++|+.+.++... ...++.+.+....+|++..+|..+.+...+.++-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 68999999999999999999999999999987542 334566666788999999999999888887776654
No 118
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.5e-08 Score=60.75 Aligned_cols=69 Identities=19% Similarity=0.348 Sum_probs=54.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC--Cchhhhh-hCCCCCccEEEeCCEEecchHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN--KPDNIFR-MNPYGQVPILVERDLILYESNIINEYI 69 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~--~~~~~~~-~~p~~~vP~L~~~~~~~~es~aI~~yL 69 (202)
+++|+.++||||.+++-+|..+|++|+.+.++... ...++.. .++..+||++..||..+.....+-++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHH
Confidence 47899999999999999999999999999998765 3334444 458999999999998776655544443
No 119
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.74 E-value=7e-08 Score=60.37 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=58.7
Q ss_pred CEEecCCCChhhHHHHHHHHHhC-----CCcEEEEcCCCC-CchhhhhhCCC--CCccEEEeCCEEecchHHHHHHHHhc
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKG-----MDFEIRDIDLFN-KPDNIFRMNPY--GQVPILVERDLILYESNIINEYIDER 72 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~g-----i~~~~~~~~~~~-~~~~~~~~~p~--~~vP~L~~~~~~~~es~aI~~yL~~~ 72 (202)
+++|+.++||||.+++-+|...+ ++|+.+.++... ..+++.+.... ..||++..||..+.++..|.+++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 48999999999999999999984 567777776432 13345554433 68999999999999999999999886
Q ss_pred CC
Q psy3758 73 FP 74 (202)
Q Consensus 73 ~~ 74 (202)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 54
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.74 E-value=1.6e-08 Score=58.83 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=50.4
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC-CCchhhhhhCCCCCccEEEeCCEEe
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF-NKPDNIFRMNPYGQVPILVERDLIL 59 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~~ 59 (202)
+++|+.++||+|.+++-.|...|++|+.+.++.. ....++.+.+...++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 5899999999999999999999999999999876 3445566666788999999888754
No 121
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.71 E-value=9.4e-08 Score=59.67 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=60.7
Q ss_pred CEEecCCCChhhHHHHHHHHH-----hCCCcEEEEcCCCC-CchhhhhhCC--CCCccEEEeCCEEecchHHHHHHHHhc
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFE-----KGMDFEIRDIDLFN-KPDNIFRMNP--YGQVPILVERDLILYESNIINEYIDER 72 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~~~~~~-~~~~~~~~~p--~~~vP~L~~~~~~~~es~aI~~yL~~~ 72 (202)
+++|+.++||+|.+++-+|.. .|++|+.+.++... ..+++..... ...+|++..||..+.+...|.+++...
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~~ 82 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKEN 82 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHHh
Confidence 589999999999999999999 89999999887542 1334544433 368999999999999999999999887
Q ss_pred CC
Q psy3758 73 FP 74 (202)
Q Consensus 73 ~~ 74 (202)
++
T Consensus 83 ~~ 84 (85)
T PRK11200 83 LG 84 (85)
T ss_pred cc
Confidence 64
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.59 E-value=4.6e-07 Score=55.98 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=60.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCch----hhhhhCCCCCccEEEeCCEEecchHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPD----NIFRMNPYGQVPILVERDLILYESNIINEYIDE 71 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~----~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~ 71 (202)
+++|+.++||+|.+++-+|...+++|+...++..+... ++.+.+....+|++..+|..+.++..|.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999988765432 344566778999999999999999999988765
No 123
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.57 E-value=6e-07 Score=57.62 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=56.7
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCch----hhhhhCCCCCccEEEeCCEEecchHHHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPD----NIFRMNPYGQVPILVERDLILYESNIINEYI 69 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~----~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL 69 (202)
+++|+.++||||.+++-+|...|++|+.+.++...... ++.+.+...++|.+..+|..+.+...+....
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 57999999999999999999999999999998653323 2344567889999999999988887776643
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.54 E-value=6.3e-07 Score=58.36 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=55.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCC---CcEEEEcCCCCC----chhhhhhCCCCCccEEEeCCEEecchHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGM---DFEIRDIDLFNK----PDNIFRMNPYGQVPILVERDLILYESNIINE 67 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~~~~~~~----~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~ 67 (202)
+++|+.++||||.+++-+|...|+ +|+.+.++-... ..++.+.+...+||.+..||..+.....+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 478999999999999999999999 799999885322 3456677778899999999998888777665
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.45 E-value=2.4e-06 Score=52.92 Aligned_cols=71 Identities=13% Similarity=0.332 Sum_probs=59.1
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCC--cEEEEcCCCCCchh----hhhhCCCCCccEEEeCCEEecchHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMD--FEIRDIDLFNKPDN----IFRMNPYGQVPILVERDLILYESNIINEYIDE 71 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~--~~~~~~~~~~~~~~----~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~ 71 (202)
+++|+-++||+|++++-+|...+++ |+...++......+ +.+......+|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5799999999999999999999999 99998887543332 44556677899999999999999888887754
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.28 E-value=4.6e-06 Score=53.32 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=49.7
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCC-CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHH
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLF-NKPDNIFRMNPYGQVPILVERDLILYESNIINEYI 69 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL 69 (202)
++||||.+++-+|..+|++|+.+.++-. ....++.+.+....+|.+..||..+.+...+.+..
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 8899999999999999999998887532 11234445677789999999999888877766644
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.25 E-value=6.1e-06 Score=52.00 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=51.7
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
++||||.+++-+|...|++|+.+.++... ...++.+.+...++|.+..||..+.+...+.+...
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHH
Confidence 69999999999999999999999986532 12344566777899999999999988888777543
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.06 E-value=3.3e-05 Score=46.36 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=48.0
Q ss_pred CCChhhHHHHHHHHHhCCC---cEEEEcCCCCCchhhhhhCCCCCccEEEe-CCEEecchHHHHHHH
Q psy3758 7 TTCPFSQRCRLVLFEKGMD---FEIRDIDLFNKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYI 69 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~---~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~~es~aI~~yL 69 (202)
..+|-|-.+.++|...+.| |+.+..+-. ...|.|++|+|.+ +++.+.+-..|++||
T Consensus 12 sid~ecLa~~~yl~~~~~~~~~~~vv~s~n~-------~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 12 SIDPECLAVIAYLKFAGAPEQQFKVVPSNNP-------WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred ccCHHHHHHHHHHHhCCCCCceEEEEEcCCC-------CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 4678999999999999999 777775421 1678999999998 889999999999998
No 129
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.92 E-value=5.5e-05 Score=51.95 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=55.7
Q ss_pred CEEecCC------CChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCC----CCCccEEEeCCEEecchHHHHHHH
Q psy3758 1 MVLYSGT------TCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNP----YGQVPILVERDLILYESNIINEYI 69 (202)
Q Consensus 1 ~~Ly~~~------~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p----~~~vP~L~~~~~~~~es~aI~~yL 69 (202)
++||..+ ++|+|.+++.+|..+||+|+++.++... ..+++.+... ...+|.+..+|..|.....+.+.-
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L~ 81 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRLN 81 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 4788888 8999999999999999999999987642 2345555533 378999999999988887777644
Q ss_pred H
Q psy3758 70 D 70 (202)
Q Consensus 70 ~ 70 (202)
+
T Consensus 82 e 82 (147)
T cd03031 82 E 82 (147)
T ss_pred H
Confidence 3
No 130
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.86 E-value=4.2e-05 Score=51.33 Aligned_cols=68 Identities=24% Similarity=0.364 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhc-CcccCCCChhHHHHHHHHhcCcccc
Q psy3758 119 YKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFSRPSYM 190 (202)
Q Consensus 119 ~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~~ 190 (202)
......+++..|..+|..+.......| ++|+-||.+|+.|..+... |..++ |++.+|+++|.+...|.
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkgi~~P---~~V~~Y~~~~s~~t~V~ 125 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKGIQWP---PKVRAYMDRMSKATGVP 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTTS------HHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccCCcCC---HHHHHHHHHHHHHcCCC
Confidence 346677777888888888775444444 9999999999999998877 55555 89999999999876654
No 131
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.84 E-value=7.3e-05 Score=60.24 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=52.6
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhh-h--------hCCCCCccEEEeCCEEecchHHHHH
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIF-R--------MNPYGQVPILVERDLILYESNIINE 67 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~-~--------~~p~~~vP~L~~~~~~~~es~aI~~ 67 (202)
+++|+.++||+|.+++-+|..+||+|+.+.++-.....++. + ......||++..||..+.+-.....
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 48999999999999999999999999999997433222332 2 2356789999999988888766655
No 132
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.59 E-value=0.00027 Score=47.08 Aligned_cols=66 Identities=21% Similarity=0.358 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhc-CcccCCCChhHHHHHHHHhcCccc
Q psy3758 120 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFSRPSY 189 (202)
Q Consensus 120 ~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~ 189 (202)
.....+++..|..++..+..... .++.+|+-||.+|+.|..+..+ |..++ |++.+|+++|++...|
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkgi~~P---~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKGLVFP---PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcCCCCC---HHHHHHHHHHHHHhCC
Confidence 36667777888888888854333 3568999999999999988876 55555 7899999999987765
No 133
>PRK10824 glutaredoxin-4; Provisional
Probab=97.58 E-value=0.00044 Score=45.43 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=51.1
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCC-CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLF-NKPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
+.||||.++.-+|...|++|....++-. ....++.+.+...+||-+..||..|.++..+.....
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence 5899999999999999999998877643 223345566778899999999999988877766543
No 134
>KOG1752|consensus
Probab=97.57 E-value=0.00087 Score=43.15 Aligned_cols=70 Identities=16% Similarity=0.318 Sum_probs=57.9
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhh----hhCCCCCccEEEeCCEEecchHHHHHHHHh
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIF----RMNPYGQVPILVERDLILYESNIINEYIDE 71 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~----~~~p~~~vP~L~~~~~~~~es~aI~~yL~~ 71 (202)
.+|.-++||||++++-+|.-.|+++..+.+|-.....++. ++....+||.+..+|..+-.+..++++-..
T Consensus 17 VifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~ 90 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKS 90 (104)
T ss_pred EEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHc
Confidence 5677799999999999999999999999999875554444 445567999999999999998888876543
No 135
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.41 E-value=0.00035 Score=45.80 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=31.7
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF 34 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~ 34 (202)
|+||+.+.||+|++++-.|..+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 6899999999999999999999999999998654
No 136
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.34 E-value=0.00054 Score=44.41 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=31.0
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
|++|+.+.||+|++++-.|..+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 689999999999999999999999999999864
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.33 E-value=0.00098 Score=39.21 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=39.7
Q ss_pred CEEecCCCChhhHHHHHHHHHh-----CCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEec
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEK-----GMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILY 60 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~ 60 (202)
+++|+.++||+|.+++-+|... +++|....++ .. +++.+......+|++..+|..++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~~-~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--EF-PDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--cC-HhHHHHcCCcccCEEEECCEEEE
Confidence 4789999999999999888765 4555555443 22 33444455567999998886544
No 138
>PTZ00062 glutaredoxin; Provisional
Probab=97.12 E-value=0.0025 Score=46.32 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=49.2
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEecchHHHHHHH
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYI 69 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL 69 (202)
+.||||+++.-+|...|++|+...+.-.. ...++.+.+....+|.+..||..+.+...+.+..
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 68999999999999999999988776432 2234455666789999999999888777666643
No 139
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.08 E-value=0.00099 Score=45.00 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=31.2
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF 34 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~ 34 (202)
|++|+.+.|++|++++-.|..+||+|+.+.+.-.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCC
Confidence 5899999999999999999999999999998543
No 140
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.06 E-value=0.0012 Score=43.55 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=31.1
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF 34 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~ 34 (202)
+++|+.+.|++|++++-.|..+|++|+.+.+.-.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCC
Confidence 5899999999999999999999999999998543
No 141
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0029 Score=37.50 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=47.4
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCC-----------CCCchhhhhh--CCCCCccEEE-eCCEEec
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL-----------FNKPDNIFRM--NPYGQVPILV-ERDLILY 60 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~-----------~~~~~~~~~~--~p~~~vP~L~-~~~~~~~ 60 (202)
+||+.+.||-|......|+-.+++|+.+.+.- .+..++|-+. |.+--+|+|. +||.++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 79999999999999999999999999999863 3556666543 5566789887 6776554
No 142
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.00 E-value=0.0015 Score=43.24 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=30.8
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
++||+.+.||+|++++-.|...|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 689999999999999999999999999998754
No 143
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.92 E-value=0.0025 Score=41.27 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=31.8
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN 35 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~ 35 (202)
|++|+.+.|+.|++++-.|...|++|+.+.+.-..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 68999999999999999999999999999886543
No 144
>KOG1147|consensus
Probab=96.89 E-value=0.00029 Score=57.18 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=70.7
Q ss_pred eCCEEecchHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q psy3758 54 ERDLILYESNIINEYIDERFP-YPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLIT 132 (202)
Q Consensus 54 ~~~~~~~es~aI~~yL~~~~~-~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (202)
.+|..+.++..+..|...... .+.+++.+ .++..++.|.++... ....++...+..
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~----------------------~~~~~~s~~~~~ 99 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST----------------------FSFDEISSSLSE 99 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh----------------------cchHHHHHHHHH
Confidence 345555666666666554332 33577766 789999999987653 122334566777
Q ss_pred hcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCccc--CCCChhHHHHHH
Q psy3758 133 LAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINL--SKSASPLIKYAE 181 (202)
Q Consensus 133 le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~--~~~~p~l~~~~~ 181 (202)
++..|.-..|++|+++|.||+++|+.+..-......+ ...+-++.+|++
T Consensus 100 ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 100 LDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD 150 (712)
T ss_pred HHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC
Confidence 8888877889999999999999999996543332211 233567889988
No 145
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.82 E-value=0.0026 Score=42.96 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=31.7
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN 35 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~ 35 (202)
|++|+.+.|+.|++++-.|..+|++|+.+.+.-..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 58999999999999999999999999999886543
No 146
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.82 E-value=0.0029 Score=42.78 Aligned_cols=34 Identities=9% Similarity=0.313 Sum_probs=31.4
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF 34 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~ 34 (202)
|++|+.+.|+.|++++-.|...|++|+.+.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 5899999999999999999999999999998654
No 147
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.81 E-value=0.0088 Score=37.69 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=48.5
Q ss_pred CEEecCCCCh------hhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhC----CCCCccEEEeCCEEecchHHHHH
Q psy3758 1 MVLYSGTTCP------FSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMN----PYGQVPILVERDLILYESNIINE 67 (202)
Q Consensus 1 ~~Ly~~~~s~------~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~----p~~~vP~L~~~~~~~~es~aI~~ 67 (202)
|++|+.+.++ .|+.++.+|.-+||+|+++.++... ...++.+.. +...+|-+..++..+.+.-.+.+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 4677776665 3567788999999999999998642 233444443 34789999999988877755544
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.74 E-value=0.0033 Score=41.26 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=31.2
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF 34 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~ 34 (202)
|+||+.+.|+-|++++-.|..+|++|+++.+--.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 6899999999999999999999999999987543
No 149
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.37 E-value=0.015 Score=35.63 Aligned_cols=54 Identities=20% Similarity=0.456 Sum_probs=40.3
Q ss_pred CEEecCCCChhhHHHHHHHHHh--CCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEK--GMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD 56 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~--gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~ 56 (202)
++||+.++|+.|..+...|... ..+++...+|.... +++....- -.+|||..+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d-~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED-PELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT-HHHHHHSC-TSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC-HHHHHHhc-CCCCEEEEcC
Confidence 5899999999999999999964 45677888887744 44554443 4899999766
No 150
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.14 E-value=0.017 Score=32.53 Aligned_cols=53 Identities=38% Similarity=0.567 Sum_probs=37.9
Q ss_pred CEEecCCCChhhHHHHHHHH-----HhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE
Q psy3758 1 MVLYSGTTCPFSQRCRLVLF-----EKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~-----~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 53 (202)
|.+|+..+|++|++++..+. ..++.+....++...........++...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEE
Confidence 56788999999999999998 456666666655443322222467788999988
No 151
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.014 Score=38.46 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=30.4
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
|++|+.+.|.-|++++..|...||+|+++.+--
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~ 35 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLK 35 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEEeec
Confidence 589999999999999999999999999987654
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.98 E-value=0.016 Score=38.76 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=30.5
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
|+||+.+.|.-|++++-.|..+|++|+++.+--
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~ 35 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDILK 35 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccC
Confidence 589999999999999999999999999998754
No 153
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.94 E-value=0.053 Score=32.75 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=37.9
Q ss_pred EEecCCCChhhHHH----HHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEe
Q psy3758 2 VLYSGTTCPFSQRC----RLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLIL 59 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v----~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~ 59 (202)
++|. ++||.|..+ .-++...|++++...++- .++..+ .....+|+++.||..+
T Consensus 4 ~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 4 QIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred EEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHH-cCCCcCCEEEECCEEE
Confidence 4454 999999998 557778899999888871 222222 3467899999887554
No 154
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.80 E-value=0.026 Score=37.09 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF 34 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~ 34 (202)
|++|+.+.|.-|++++-.|...|++|+.+.+.-.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKN 34 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCC
Confidence 6899999999999999999999999999887543
No 155
>PRK10026 arsenate reductase; Provisional
Probab=95.74 E-value=0.023 Score=38.77 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=30.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLF 34 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~ 34 (202)
|++|+.+.|.-|++++-.|..+|++|+++.+--.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ 37 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLET 37 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCC
Confidence 5899999999999999999999999999987543
No 156
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.70 E-value=0.031 Score=36.63 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.4
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
|++|+.+.|.-|++++-.|...|++|+.+.+--
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLK 33 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccc
Confidence 689999999999999999999999999988643
No 157
>PRK10853 putative reductase; Provisional
Probab=95.68 E-value=0.027 Score=37.30 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=30.4
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
|++|+.+.|.-|++++-.|...|++|+.+.+--
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehcc
Confidence 589999999999999999999999999998754
No 158
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.57 E-value=0.063 Score=32.56 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=39.0
Q ss_pred CEEecCCCChhhHHHHHHHHH----hCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCE
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFE----KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDL 57 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~ 57 (202)
+++|+.++||+|..+.-.+.. .+..+....++..... +.........+|++..+|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCCccCCEEEECCE
Confidence 478999999999988877653 3444666677765433 3334455668999997764
No 159
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.01 E-value=0.1 Score=32.60 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=37.6
Q ss_pred CEEecCCCChhhHHHHHHHHHh-----CCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEec
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEK-----GMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILY 60 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~ 60 (202)
|.+|..++|++|..+.-++... ++.++.+.++ +. ++......-..+|+++.||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~-~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LF-QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hC-HHHHHHcCCccCCEEEECCEEEE
Confidence 4688889999999888766544 4555555543 23 33444455667999997776543
No 160
>PHA02125 thioredoxin-like protein
Probab=94.97 E-value=0.093 Score=31.53 Aligned_cols=51 Identities=16% Similarity=0.301 Sum_probs=37.0
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEe
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVE 54 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 54 (202)
+++|+.++|+.|+.+.-.|. ++.++...++.+.. .++.+...-..+|++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~~-~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDEG-VELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCCC-HHHHHHcCCceeCeEEC
Confidence 46788999999999887775 45677777765443 34555566678999983
No 161
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.19 Score=31.88 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=47.9
Q ss_pred cCCCChhhHHHHHHHHHhC-CCcEEEEcCCC-CCchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHh
Q psy3758 5 SGTTCPFSQRCRLVLFEKG-MDFEIRDIDLF-NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDE 71 (202)
Q Consensus 5 ~~~~s~~~~~v~~~l~~~g-i~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~ 71 (202)
.+|.|+|+.++--+|..+| ++|..+.|=.+ +-...+.+.+-..++|-|-.+|..+..|--|.+...+
T Consensus 26 ~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q~ 94 (105)
T COG0278 26 EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQS 94 (105)
T ss_pred CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHHc
Confidence 4689999999999999999 56666665322 1222334445567899999999988888766665543
No 162
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.68 E-value=0.17 Score=32.81 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=48.2
Q ss_pred CChhhHHHHHHHHHh---CCCcEEEEcCCCCCchhhhhh-CC-CCCccEEE-eCCE-------------EecchHHHHHH
Q psy3758 8 TCPFSQRCRLVLFEK---GMDFEIRDIDLFNKPDNIFRM-NP-YGQVPILV-ERDL-------------ILYESNIINEY 68 (202)
Q Consensus 8 ~s~~~~~v~~~l~~~---gi~~~~~~~~~~~~~~~~~~~-~p-~~~vP~L~-~~~~-------------~~~es~aI~~y 68 (202)
.||.|..+.-+|+.. .-..+++.|+......+..+. .. ...+|+|+ .+|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 477788887777643 334777888876655555543 33 46799999 4433 79999999999
Q ss_pred HHhcCC
Q psy3758 69 IDERFP 74 (202)
Q Consensus 69 L~~~~~ 74 (202)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999997
No 163
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.57 E-value=0.28 Score=29.53 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=35.8
Q ss_pred EEecCCCChhhHHHHHH----HHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecch
Q psy3758 2 VLYSGTTCPFSQRCRLV----LFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYES 62 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~----l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~es 62 (202)
++ ..++||+|..+.-+ +...|+.++...+ ...++. .......+|+++.||...+..
T Consensus 4 ~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 4 KV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 55 45669999976654 4455766766654 233444 556678999999888654443
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.33 E-value=0.46 Score=33.54 Aligned_cols=51 Identities=25% Similarity=0.168 Sum_probs=38.3
Q ss_pred HHHHHHHHhcchhcCC---CeeecCC-chHHHHHHHHHHHHHhhcCcccCCCChhHHHH
Q psy3758 125 EIRDRLITLAPLFLKN---KYMLGDE-FSMLDVVIAPLLWRLDYYGINLSKSASPLIKY 179 (202)
Q Consensus 125 ~~~~~l~~le~~L~~~---~fl~G~~-~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~ 179 (202)
...+++..+++.|+.. +|+.|+. +|-.|+.+++.+.-+... ++++ +.|+.|
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~p--~LP~--~~l~~~ 166 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLVP--ELPD--PFLRDH 166 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhcc--cCCc--HHHHHH
Confidence 3557888889999887 9999987 999999999988765443 3443 455554
No 165
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.63 E-value=0.79 Score=29.28 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=37.8
Q ss_pred CEEecCCCChh------hHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhC---------CCCCccEEEeCCEEecchHH
Q psy3758 1 MVLYSGTTCPF------SQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMN---------PYGQVPILVERDLILYESNI 64 (202)
Q Consensus 1 ~~Ly~~~~s~~------~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~---------p~~~vP~L~~~~~~~~es~a 64 (202)
|++|....++- .+++..+|..++|+|+.+.+.... ...+.++.. +....|-+..|+..+.+--.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~ 82 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED 82 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence 46777666553 457889999999999999987742 222333333 23345788888876665544
Q ss_pred HHH
Q psy3758 65 INE 67 (202)
Q Consensus 65 I~~ 67 (202)
+-+
T Consensus 83 f~e 85 (99)
T PF04908_consen 83 FEE 85 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=89.81 E-value=0.58 Score=30.41 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=23.7
Q ss_pred ecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 4 YSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 4 y~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
|+.+.|.-|++++-.|...|++|+.+.+.-
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhh
Confidence 788999999999999999999999988754
No 167
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=85.92 E-value=6.3 Score=24.47 Aligned_cols=68 Identities=15% Similarity=0.304 Sum_probs=43.6
Q ss_pred EEecCCCChhhHHHHHHHH-----HhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEe------cchHHHHHH
Q psy3758 2 VLYSGTTCPFSQRCRLVLF-----EKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLIL------YESNIINEY 68 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~-----~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~------~es~aI~~y 68 (202)
..++.++|+.|+...-.+. +.+ ++....++.... .++.+......+|++. .+|..+ .+...|.++
T Consensus 22 v~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 99 (103)
T PF00085_consen 22 VYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEF 99 (103)
T ss_dssp EEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHH
T ss_pred EEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHH
Confidence 4677899999998874442 333 677777777543 4455556678899887 666432 233456666
Q ss_pred HHh
Q psy3758 69 IDE 71 (202)
Q Consensus 69 L~~ 71 (202)
|++
T Consensus 100 i~~ 102 (103)
T PF00085_consen 100 IEK 102 (103)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 168
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=85.47 E-value=4.3 Score=26.88 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=31.5
Q ss_pred EecCCCChhhHHHHHHHH----HhCCCcEEEEcCCCC----C-c---hhhhhhC----CCCCccEEE--eCCE
Q psy3758 3 LYSGTTCPFSQRCRLVLF----EKGMDFEIRDIDLFN----K-P---DNIFRMN----PYGQVPILV--ERDL 57 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~----~~gi~~~~~~~~~~~----~-~---~~~~~~~----p~~~vP~L~--~~~~ 57 (202)
-++.++||+|+.+.=.|. ..++++-.+.++... . . .++.+.. ....+|+++ .+|.
T Consensus 29 ~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 29 FIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred EEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 467899999998665443 344665555555321 0 1 1333322 234599988 6663
No 169
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=85.37 E-value=5.4 Score=23.84 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=33.1
Q ss_pred EEecCCCChhhHHHHHHHHH-----hCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE-----KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
..++.++|+.|+...-.+.. .++.+-.+ +... ..++........+|+++ .+|.
T Consensus 15 l~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i--~~~~-~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 15 VDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKV--DVDE-NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEECCCChhHHHhhHHHHHHHHHCCCceEEEE--ECCC-ChhHHHhcCcccccEEEEEECCE
Confidence 46778899999988877765 44444444 4332 23344444566789876 5564
No 170
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=82.89 E-value=6.6 Score=24.51 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=34.4
Q ss_pred EEecCCCChhhHHHHHHHHH----hCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEe
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE----KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLIL 59 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~ 59 (202)
..|+.++|+.|+...-.+.. .+-.+....++.... +++.....-..+|++. .+|..+
T Consensus 18 v~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 18 VLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-QEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-HHHHHHCCCeeccEEEEEECCeEE
Confidence 46677999999988766643 121345555555433 3444444456889776 566543
No 171
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.51 E-value=1.3 Score=37.27 Aligned_cols=71 Identities=13% Similarity=-0.007 Sum_probs=44.6
Q ss_pred CEEecCCCChhhHHHHHHHHHh---CCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecc----hHHHHHHHHhc
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEK---GMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYE----SNIINEYIDER 72 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~e----s~aI~~yL~~~ 72 (202)
|++|..++||||..+.-++... +-.++...++.... +++.+......||.+..|+..+.+ -..+++.+.+.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-QDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-HhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhcc
Confidence 5789999999999877665433 22355555554333 445555567799999977754443 23455666543
No 172
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=81.69 E-value=4 Score=34.66 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=37.3
Q ss_pred CEEecCCCChhhHHHHHH----HHHh-CCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEe
Q psy3758 1 MVLYSGTTCPFSQRCRLV----LFEK-GMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLIL 59 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~----l~~~-gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~ 59 (202)
|++|..++||+|-.+.-+ +.+. +|..+.+.+.. . ++..+......||.++.||..+
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--~-~~~~~~~~v~~vP~~~i~~~~~ 540 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--F-PDLKDEYGIMSVPAIVVDDQQV 540 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--c-HHHHHhCCceecCEEEECCEEE
Confidence 478889999999876654 3344 56666555543 2 3455455678899999887543
No 173
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=81.34 E-value=4.5 Score=25.60 Aligned_cols=51 Identities=14% Similarity=0.084 Sum_probs=31.1
Q ss_pred EEecCCCChhhHHHHHHH--------HHhCCCcEEEEcCCCCC---chhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVL--------FEKGMDFEIRDIDLFNK---PDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l--------~~~gi~~~~~~~~~~~~---~~~~~~~~p~~~vP~L~ 53 (202)
..|+.++|++|+...-.+ .+.+ .+....++.... ..++.+......+|++.
T Consensus 16 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 16 VDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 456789999999876432 2232 455556665432 23455555567799876
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.09 E-value=1.2 Score=37.43 Aligned_cols=60 Identities=13% Similarity=0.042 Sum_probs=39.2
Q ss_pred CEEecCCCChhhHHHHHHHHHhCC---CcEEEEcCCCCCchhhhhhCCCCCccEEEeCCEEecc
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGM---DFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYE 61 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~e 61 (202)
|++|..+.||||-.+.-++....+ .++...++.... +++.+......||.+..|+..+.+
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~-~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF-QDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC-HHHHHhcCCcccCEEEECCcEEEe
Confidence 578999999999987766554433 344445554433 334455556799999977755444
No 175
>KOG0911|consensus
Probab=79.81 E-value=7.1 Score=28.83 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=48.3
Q ss_pred cCCCChhhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhCCCCCccEEEeCCEEecchHHHHHHHH
Q psy3758 5 SGTTCPFSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 5 ~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
..|.|+|++.+.-.|...|++|....|-.+. -...+++.+-..+.|-|-.+|..+.+.--|.+.+.
T Consensus 150 ~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 150 EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhh
Confidence 3688999999999999999999988875421 22223445667889999988887776655555443
No 176
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=78.33 E-value=13 Score=22.86 Aligned_cols=56 Identities=16% Similarity=0.069 Sum_probs=35.1
Q ss_pred EEecCCCChhhHHHHHHHHHh----CCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEK----GMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLI 58 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 58 (202)
..++.++|+.|+++.-.|... +..+....++....+ ++.+......+|++. .+|..
T Consensus 19 v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 19 LHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-EISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-HHHHhcCCccccEEEEEECCEE
Confidence 456789999999887665532 345666666665433 344433456799876 66643
No 177
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=78.10 E-value=8.4 Score=25.02 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=30.9
Q ss_pred cCCCChhhHHHHHHHHHhCCC---cEEEEcCCCCCchhhhhhCCCCCccEEE
Q psy3758 5 SGTTCPFSQRCRLVLFEKGMD---FEIRDIDLFNKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 5 ~~~~s~~~~~v~~~l~~~gi~---~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 53 (202)
+-++||+|+.++-++....-. .+...++... .+++.....-..+|++.
T Consensus 30 ~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 30 SKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGVERVPTTI 80 (113)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCCCcCCEEE
Confidence 558999999887776644321 3444455443 34555566678899887
No 178
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=75.49 E-value=2.1 Score=28.27 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=13.3
Q ss_pred CccEEE--eCCEEecchHHHHHHHHhcCC
Q psy3758 48 QVPILV--ERDLILYESNIINEYIDERFP 74 (202)
Q Consensus 48 ~vP~L~--~~~~~~~es~aI~~yL~~~~~ 74 (202)
.-|.|. .+|..++|+.||++|+..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 447775 457899999999999988764
No 179
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=74.15 E-value=18 Score=23.41 Aligned_cols=58 Identities=3% Similarity=-0.087 Sum_probs=36.6
Q ss_pred EEecCCCChhhHHHHHHHHHhC--C-CcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEec
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKG--M-DFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLILY 60 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~g--i-~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~~ 60 (202)
..++.++|+.|+.+.-.+.... . ......++.... .++.+...-..+|+++ .+|..+.
T Consensus 27 V~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 27 CHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-PFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-HHHHHHCCCccCCEEEEEECCEEEE
Confidence 3567799999998876664321 1 245566665543 3444555677899887 6776544
No 180
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=69.98 E-value=16 Score=23.86 Aligned_cols=16 Identities=25% Similarity=0.791 Sum_probs=12.5
Q ss_pred EEecCCCChhhHHHHH
Q psy3758 2 VLYSGTTCPFSQRCRL 17 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~ 17 (202)
..++.++|++|++..-
T Consensus 19 v~f~a~wC~~C~~~~~ 34 (125)
T cd02951 19 LLFSQPGCPYCDKLKR 34 (125)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 4567899999998763
No 181
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=66.02 E-value=32 Score=22.04 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=32.0
Q ss_pred EEecCCCChhhHHHHHHH-----HHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCE
Q psy3758 2 VLYSGTTCPFSQRCRLVL-----FEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l-----~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
..++.++|+.|+...-.+ .+.+..+....++.... ..+.....-..+|+++ .+|.
T Consensus 29 V~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 29 IKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLARKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred EEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHHHHcCCccCCEEEEEECCE
Confidence 356779999998665333 23333455555555432 2333444567899887 6664
No 182
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=64.75 E-value=8.1 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.4
Q ss_pred ccEEE-eCCEEecchHHHHHHHHhcCC
Q psy3758 49 VPILV-ERDLILYESNIINEYIDERFP 74 (202)
Q Consensus 49 vP~L~-~~~~~~~es~aI~~yL~~~~~ 74 (202)
+|.+. .+|.++++|..|+++..+.+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35554 899999999999999988754
No 183
>PTZ00051 thioredoxin; Provisional
Probab=64.08 E-value=31 Score=21.17 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=32.7
Q ss_pred EEecCCCChhhHHHHHHHHH---hCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE---KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLI 58 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 58 (202)
..++.++|+.|+...-.+.. ....+....++... ...+.+...-..+|+++ .+|..
T Consensus 23 i~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 23 VDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCCceeeEEEEEeCCeE
Confidence 35678999999987655543 22234445555443 23344445567889876 55543
No 184
>KOG3425|consensus
Probab=63.41 E-value=36 Score=22.64 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=39.5
Q ss_pred cCCCChhhHHHH----HHHHHhCCCcEEEEcCCCCCchhhhhhCCC-------CCccEEE--e-CCEEecchHHHHHHHH
Q psy3758 5 SGTTCPFSQRCR----LVLFEKGMDFEIRDIDLFNKPDNIFRMNPY-------GQVPILV--E-RDLILYESNIINEYID 70 (202)
Q Consensus 5 ~~~~s~~~~~v~----~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~-------~~vP~L~--~-~~~~~~es~aI~~yL~ 70 (202)
+-++||.|.++. -+|.+.+-+...+.+...+.+-|--..||+ .-||+|. . ..+.+.+...-..+|.
T Consensus 41 GqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lv 120 (128)
T KOG3425|consen 41 GQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLV 120 (128)
T ss_pred CCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHH
Confidence 357899988654 456666667777777654332222222332 4588887 3 2356666666666665
Q ss_pred hc
Q psy3758 71 ER 72 (202)
Q Consensus 71 ~~ 72 (202)
+.
T Consensus 121 e~ 122 (128)
T KOG3425|consen 121 EM 122 (128)
T ss_pred HH
Confidence 53
No 185
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=62.51 E-value=34 Score=21.77 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=30.3
Q ss_pred EEecCCCChhhHHHHHHHH-----HhCCCcEEEEcCCCCCchhhh-hhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLF-----EKGMDFEIRDIDLFNKPDNIF-RMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~-----~~gi~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~ 53 (202)
..++.++||.|+...-.+. +.+..+....++.+.....+. +......+|++.
T Consensus 26 v~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 26 VVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEE
Confidence 4678899999997754432 333345555555543222222 234567799876
No 186
>PHA02278 thioredoxin-like protein
Probab=61.86 E-value=39 Score=21.55 Aligned_cols=56 Identities=11% Similarity=0.183 Sum_probs=31.5
Q ss_pred ecCCCChhhHHHHHHHHHh----CCCcEEEEcCCCCC---chhhhhhCCCCCccEEE--eCCEEe
Q psy3758 4 YSGTTCPFSQRCRLVLFEK----GMDFEIRDIDLFNK---PDNIFRMNPYGQVPILV--ERDLIL 59 (202)
Q Consensus 4 y~~~~s~~~~~v~~~l~~~----gi~~~~~~~~~~~~---~~~~~~~~p~~~vP~L~--~~~~~~ 59 (202)
++-++|+.|+.+.=.+... +.......++.+.. .+++....--..+|+++ .+|..+
T Consensus 21 F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 21 ITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4668899898766444322 22233444444422 23444455567899887 677543
No 187
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=61.67 E-value=22 Score=26.03 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=33.8
Q ss_pred CEEecCCCChhhHHHHHHHHHhC---CCcEEEEcCCCCCchhhhhhCCCCCccEEEe
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKG---MDFEIRDIDLFNKPDNIFRMNPYGQVPILVE 54 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~g---i~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 54 (202)
|++|+.++||+|..+.-++...- -......+|.... ++..+...-..+|+++.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-PDLAEKYGVMSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-HHHHHHhCCccCCEEEE
Confidence 35688999999998887666432 1234445665433 34444555667999983
No 188
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=61.45 E-value=26 Score=22.53 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=33.3
Q ss_pred EEecCCCChhhHHHHHHHHHhCC---CcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEec
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGM---DFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLILY 60 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~~ 60 (202)
..++.++|+.|+.+.-.+....- ......++.... ++.+...-..+|+++ .+|..+.
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCCCcCCEEEEEECCEEEE
Confidence 35677899999977655542211 234455555433 344444456899887 6775543
No 189
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=59.33 E-value=21 Score=23.25 Aligned_cols=88 Identities=10% Similarity=0.110 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCe
Q psy3758 63 NIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKY 142 (202)
Q Consensus 63 ~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~f 142 (202)
.+.++||....+ ++-........-..+.+.+.+.+...++.+......-....+-....++-.....|++.|++
T Consensus 9 ~~LI~yLte~L~---lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~--- 82 (113)
T PF12290_consen 9 DALIEYLTENLS---LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLAS--- 82 (113)
T ss_pred HHHHHHHHHhHH---HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 567889888654 22211111122233445555555555555555544556666777777888888888888865
Q ss_pred eecCCchHHHHHHH
Q psy3758 143 MLGDEFSMLDVVIA 156 (202)
Q Consensus 143 l~G~~~s~aD~~l~ 156 (202)
..+..+|-..+.+.
T Consensus 83 V~~~~aT~eQ~~Fi 96 (113)
T PF12290_consen 83 VWNQKATNEQIAFI 96 (113)
T ss_pred HHcCCCCHHHHHHH
Confidence 11346666666554
No 190
>KOG1668|consensus
Probab=59.16 E-value=5.1 Score=29.64 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHHhcchhcCCCeeecCCchHHHHHHHHHHHHHhhcCcccCCCChhHHHHHHHHhcCccc
Q psy3758 127 RDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY 189 (202)
Q Consensus 127 ~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 189 (202)
...+..++..|.+++|..|..+|-.|+.++..+.. .+....+++..+|+.++.+.-.+
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~-----ep~s~~~v~~~~w~~~l~a~~~~ 67 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGV-----EPQSARLVNAERWYSKLEALLRL 67 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhccc-----CcchhhhhHHHHHHHHHHHHHHH
Confidence 46678888899999999999999999988855421 11133457778888777665443
No 191
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=58.86 E-value=54 Score=22.72 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=32.6
Q ss_pred EEecCCCChhhHHHHHHHHH-----hCCCcEEEEcCCCCCchhhhhhCCC------CCccEEE--eCCEEec
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE-----KGMDFEIRDIDLFNKPDNIFRMNPY------GQVPILV--ERDLILY 60 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~~~~~~~~~~~~~~~p~------~~vP~L~--~~~~~~~ 60 (202)
..|+.++|+.|+...-.+.. .+-.+....++.+...+ ..+...- +++|+++ .+|..+.
T Consensus 52 V~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 52 VEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 35677899999977644432 22335666666654332 2222112 3489887 6775543
No 192
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=58.04 E-value=48 Score=24.25 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=33.3
Q ss_pred EEecC---CCChhhHHHHHHHHHh-----CCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCE
Q psy3758 2 VLYSG---TTCPFSQRCRLVLFEK-----GMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 2 ~Ly~~---~~s~~~~~v~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
.+|.. ++||.|+.+.-.+... ++.+....++.+. ..++-....-..+|+++ .+|.
T Consensus 24 ~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 24 VVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred EEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCCCccCEEEEEeCCe
Confidence 46666 8899999877666544 2334445554433 33444445567899887 4553
No 193
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=56.42 E-value=20 Score=24.49 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=45.5
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhh-hC-C--CCCccEEEeCCEEecc---hHHHHHHHHhcC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFR-MN-P--YGQVPILVERDLILYE---SNIINEYIDERF 73 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~-~~-p--~~~vP~L~~~~~~~~e---s~aI~~yL~~~~ 73 (202)
|+.|+.+.|+.|..-.=.|+.+|..+..+..+-. ..++. .+ | ...==+.+.||..+-. ..+|.+.|++..
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~---~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF---LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH---HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 5789999999999988889988888877765431 11111 10 1 1222355667755443 467889998875
No 194
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=56.06 E-value=51 Score=21.51 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=29.3
Q ss_pred EecCCCChhhHHHHHHHHH------hCCCcEEEEcCCCCCchhhhhhCCCC-CccEEE--e-CCEEe
Q psy3758 3 LYSGTTCPFSQRCRLVLFE------KGMDFEIRDIDLFNKPDNIFRMNPYG-QVPILV--E-RDLIL 59 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~------~gi~~~~~~~~~~~~~~~~~~~~p~~-~vP~L~--~-~~~~~ 59 (202)
-++-++|+.|+...-.+.. .+..|..+.++.... +.....+..| -+|+++ + +|..+
T Consensus 25 ~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 25 LIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred EEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCCCCc
Confidence 4567899999987655443 223344444443221 1112234443 499887 3 55543
No 195
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=55.91 E-value=49 Score=20.76 Aligned_cols=53 Identities=6% Similarity=-0.070 Sum_probs=30.1
Q ss_pred EecCCCChhhHHHHHHHHHh----C-CCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCE
Q psy3758 3 LYSGTTCPFSQRCRLVLFEK----G-MDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~----g-i~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
.++.++|+.|+...-.+... + -......++.+ ..+..+..--..+|++. .+|.
T Consensus 23 ~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 23 DVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred EEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCCCcCcEEEEEECCE
Confidence 46779999999776444321 2 12344445544 23344444467789776 5664
No 196
>PRK09381 trxA thioredoxin; Provisional
Probab=55.44 E-value=50 Score=20.79 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=33.3
Q ss_pred EEecCCCChhhHHHHHHHH----HhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEe
Q psy3758 2 VLYSGTTCPFSQRCRLVLF----EKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLIL 59 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~----~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~ 59 (202)
..++.++||.|+...-.+. ..+-.+....++..... .+.....-..+|+++ .+|..+
T Consensus 26 v~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 26 VDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-hHHHhCCCCcCCEEEEEeCCeEE
Confidence 3467789999997764443 22223556666665433 333334467899886 566543
No 197
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=53.33 E-value=39 Score=20.65 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=33.4
Q ss_pred EecCCCChhhHHHHHHHHHh----CCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEE
Q psy3758 3 LYSGTTCPFSQRCRLVLFEK----GMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLI 58 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 58 (202)
.++.++|+.|+...-.+... +-.+....++.... .++.+...-..+|+++ .+|..
T Consensus 18 ~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 18 DFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-PQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-HHHHHHcCCCCCCEEEEEeCCEE
Confidence 45678999999776555432 22355556666543 3444444566899887 66653
No 198
>COG3150 Predicted esterase [General function prediction only]
Probab=53.02 E-value=14 Score=26.17 Aligned_cols=32 Identities=19% Similarity=0.049 Sum_probs=26.4
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
=|++|+.||.+++.+++++..+-.+..+.+..
T Consensus 4 YlHGFnSSP~shka~l~~q~~~~~~~~i~y~~ 35 (191)
T COG3150 4 YLHGFNSSPGSHKAVLLLQFIDEDVRDIEYST 35 (191)
T ss_pred EEecCCCCcccHHHHHHHHHHhccccceeeec
Confidence 36799999999999999999988776666543
No 199
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=52.68 E-value=22 Score=24.63 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=25.7
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhh
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIF 41 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~ 41 (202)
+.-+++++++-.|...|++|+.........++++.
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~ 45 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLL 45 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHH
Confidence 34588999999999999999998888776655544
No 200
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=50.57 E-value=88 Score=22.16 Aligned_cols=57 Identities=9% Similarity=-0.034 Sum_probs=33.8
Q ss_pred EecCCCChhhHHHHHHHH---HhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEecc
Q psy3758 3 LYSGTTCPFSQRCRLVLF---EKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLILYE 61 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~---~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~~e 61 (202)
.++.++|+.|+.+.-.|. ..--.+....++.+.. ++....+-..+|+|+ -+|..+..
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 356688998986654332 2212355566665532 344455677899887 67765543
No 201
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=49.46 E-value=61 Score=19.96 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=30.0
Q ss_pred EEecCCCChhhHHHHHHH-----HHhC-CCcEEEEcCCCC-CchhhhhhCCCCCccEEE--eCCE
Q psy3758 2 VLYSGTTCPFSQRCRLVL-----FEKG-MDFEIRDIDLFN-KPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l-----~~~g-i~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
.+++.++|+.|+...-.+ ...+ -.+....++... ..+.+.....-..+|+++ .+|.
T Consensus 22 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 22 VMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 466778999999774222 1211 223444444432 134444444456789886 4443
No 202
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=48.81 E-value=78 Score=21.03 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=35.9
Q ss_pred EecCCCChhhHHHHH-------HHHHhCCCcEEEEcCCCCCchh---hhh----hCCCCCccEEE---eCCEEecch
Q psy3758 3 LYSGTTCPFSQRCRL-------VLFEKGMDFEIRDIDLFNKPDN---IFR----MNPYGQVPILV---ERDLILYES 62 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~-------~l~~~gi~~~~~~~~~~~~~~~---~~~----~~p~~~vP~L~---~~~~~~~es 62 (202)
.++.++|++|++..- +.....-.|..+.+|.+..++- +.+ .+..+-+|+++ .+|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 357789999998743 2223334688888887653321 111 23456789877 456776665
No 203
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=48.62 E-value=34 Score=20.89 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=31.6
Q ss_pred EecCCCChhhHHHHHHHHHh----CCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCE
Q psy3758 3 LYSGTTCPFSQRCRLVLFEK----GMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
.++.++|+.|+...-.+... +-.+....++.... .++........+|+++ .+|.
T Consensus 20 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 20 DFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-PDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-HHHHHHcCCCcCCEEEEEeCCc
Confidence 45678899999776554322 22355556665433 3344444456799876 5554
No 204
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.47 E-value=23 Score=21.40 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=22.4
Q ss_pred ChhhHHHHHHHHHhCCCcEEEEcCCC
Q psy3758 9 CPFSQRCRLVLFEKGMDFEIRDIDLF 34 (202)
Q Consensus 9 s~~~~~v~~~l~~~gi~~~~~~~~~~ 34 (202)
-+|++|+.-.|+..|++|+..+-...
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSGID 40 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSGID 40 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCCCc
Confidence 37999999999999999999886553
No 205
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=47.96 E-value=68 Score=20.13 Aligned_cols=56 Identities=9% Similarity=-0.039 Sum_probs=31.0
Q ss_pred EecCCCChhhHHHHHHHHHh---CCCcEEEEcCCCCCc--hhhhhhCCCCCccEEE--eCCEE
Q psy3758 3 LYSGTTCPFSQRCRLVLFEK---GMDFEIRDIDLFNKP--DNIFRMNPYGQVPILV--ERDLI 58 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~---gi~~~~~~~~~~~~~--~~~~~~~p~~~vP~L~--~~~~~ 58 (202)
-++.++|+.|+...=.+... --.+....++.+... .++.+...-..+|+++ .+|..
T Consensus 21 ~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 21 EFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred EEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeE
Confidence 45678899898665444321 112444555544322 2444444556789876 56643
No 206
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=47.63 E-value=80 Score=20.85 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=28.9
Q ss_pred CCChhhHHHHHHH----HHhCCCcEEEEcCCCCC------chhhhhhCCCC-CccEEE--eCCEEecc
Q psy3758 7 TTCPFSQRCRLVL----FEKGMDFEIRDIDLFNK------PDNIFRMNPYG-QVPILV--ERDLILYE 61 (202)
Q Consensus 7 ~~s~~~~~v~~~l----~~~gi~~~~~~~~~~~~------~~~~~~~~p~~-~vP~L~--~~~~~~~e 61 (202)
++||.|+.+.-.+ ....-.+....++.++. ..++....... .+|++. .++..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 6899898665433 23222355566665432 23444332334 799887 44444433
No 207
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=47.60 E-value=67 Score=19.90 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=31.6
Q ss_pred EEecCCCChhhHHHHHHHHH-----hCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE-----KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
..++.++|+.|+...-.+.. .| .+....++.... +.+.+...-..+|++. .+|.
T Consensus 23 v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 23 VNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-RMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-HHHHHHcCCCccCEEEEEcCCC
Confidence 45677999999976655432 23 245556666543 3333334456889886 4553
No 208
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=47.13 E-value=69 Score=20.09 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=29.8
Q ss_pred EEecCCCChhhHHHHHHHH-----HhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCC
Q psy3758 2 VLYSGTTCPFSQRCRLVLF-----EKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERD 56 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~-----~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~ 56 (202)
..++-++|+.|+...-.+. +.++ ....++..+..+.+.....-..+|++. ++|
T Consensus 23 V~F~a~WC~~C~~~~p~l~~la~~~~~~--~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 23 VLFYASWCPFSASFRPHFNALSSMFPQI--RHLAIEESSIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred EEEECCCCHHHHhHhHHHHHHHHHhccC--ceEEEECCCCCHHHHHhcCCeecCEEEEEcCC
Confidence 3467789999987774443 3343 334444432233444444456789776 444
No 209
>PF13728 TraF: F plasmid transfer operon protein
Probab=46.87 E-value=74 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=23.6
Q ss_pred EEecCCCChhhHH----HHHHHHHhCCCcEEEEcCC
Q psy3758 2 VLYSGTTCPFSQR----CRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 2 ~Ly~~~~s~~~~~----v~~~l~~~gi~~~~~~~~~ 33 (202)
.+++.+.||+|+. ++.+....|+++..+.+|.
T Consensus 125 ~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG 160 (215)
T PF13728_consen 125 FFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDG 160 (215)
T ss_pred EEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 4567789999984 4555666788888888774
No 210
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=46.84 E-value=17 Score=20.87 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=20.5
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
+||......-+..++-+|+..||++....-..
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 67888888889999999999999998876543
No 211
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=46.59 E-value=37 Score=23.70 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=28.8
Q ss_pred CCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhh
Q psy3758 7 TTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFR 42 (202)
Q Consensus 7 ~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~ 42 (202)
+.-+.++++...|+..|++|+.........++.+.+
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~ 44 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLE 44 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHH
Confidence 344789999999999999999999988766554443
No 212
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=46.46 E-value=21 Score=20.38 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=15.8
Q ss_pred CEEecC----CCChhhHHHHHHHHH
Q psy3758 1 MVLYSG----TTCPFSQRCRLVLFE 21 (202)
Q Consensus 1 ~~Ly~~----~~s~~~~~v~~~l~~ 21 (202)
|+||.+ ..|.||++|..+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 567744 667899999988763
No 213
>KOG2824|consensus
Probab=45.48 E-value=42 Score=25.75 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhCCCcEEEEcCCCC-CchhhhhhC----CCCCccEEEeCCEEecchHHHHHHH
Q psy3758 11 FSQRCRLVLFEKGMDFEIRDIDLFN-KPDNIFRMN----PYGQVPILVERDLILYESNIINEYI 69 (202)
Q Consensus 11 ~~~~v~~~l~~~gi~~~~~~~~~~~-~~~~~~~~~----p~~~vP~L~~~~~~~~es~aI~~yL 69 (202)
-|..||.+|+-.+|-|+++.|.++. ..+|+..+- -.-.+|.+..+|..|...-.|.+.-
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~Ln 212 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLN 212 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhhh
Confidence 3678999999999999999999863 445555431 2457897778888887777666543
No 214
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=45.37 E-value=1e+02 Score=21.50 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=48.3
Q ss_pred HHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcC-CCeee-cCCchHHHHHHHHHH-HHHhhcCccc
Q psy3758 93 LLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK-NKYML-GDEFSMLDVVIAPLL-WRLDYYGINL 169 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~fl~-G~~~s~aD~~l~~~l-~~~~~~~~~~ 169 (202)
+..+...++.....+............+...+.+++.++.+++.+.. ..|.. |+.+..|-++++=.+ .+.+..-..+
T Consensus 55 L~~iq~~L~~l~~~la~~~~~~~~~i~~~~v~~Le~~i~~~~~~~~~~~~Filpgg~~~~a~Lh~aRtv~RraER~~v~l 134 (163)
T PF01923_consen 55 LERIQNELFDLGAELATPEEDEEPEITEEDVQELEEEIDEYSEELPPLKGFILPGGSPAAAALHVARTVCRRAERRAVRL 134 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSSSCS--HHHHHHHHHHHHHHHHHS-SESSCEES-SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHHHHHHHHHhcCCCCceeEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344344444433333322222445566666777777777766655 56655 568888877777433 3333321100
Q ss_pred C---CCChhHHHHHHHHhc
Q psy3758 170 S---KSASPLIKYAERIFS 185 (202)
Q Consensus 170 ~---~~~p~l~~~~~~~~~ 185 (202)
. .-.|.+.+|.+|++.
T Consensus 135 ~~~~~v~~~il~ylNRLSd 153 (163)
T PF01923_consen 135 FREEEVRPDILRYLNRLSD 153 (163)
T ss_dssp HHHSSS-HHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH
Confidence 0 024889999998764
No 215
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=45.06 E-value=13 Score=24.57 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=27.1
Q ss_pred cCCCChhhHHHHHH----HHHhCCCcEEEEcCCCC------Cchhhhh--hCCCCCccEEE--eCCEEecch
Q psy3758 5 SGTTCPFSQRCRLV----LFEKGMDFEIRDIDLFN------KPDNIFR--MNPYGQVPILV--ERDLILYES 62 (202)
Q Consensus 5 ~~~~s~~~~~v~~~----l~~~gi~~~~~~~~~~~------~~~~~~~--~~p~~~vP~L~--~~~~~~~es 62 (202)
+.++||.|..+.-. +....-....+.+..++ ....|+. .-....||+|+ .++..+.|.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchh
Confidence 45789999977633 33322234544444322 2223443 22356799998 444555554
No 216
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=44.06 E-value=80 Score=20.18 Aligned_cols=69 Identities=10% Similarity=0.230 Sum_probs=40.3
Q ss_pred EecCCCChhhHHHHHHHHHhCCC--cEEEEcCCCCCch--hhhhhC---CCCCccEEEeCCE-EecchHHHHHHHHhc
Q psy3758 3 LYSGTTCPFSQRCRLVLFEKGMD--FEIRDIDLFNKPD--NIFRMN---PYGQVPILVERDL-ILYESNIINEYIDER 72 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~gi~--~~~~~~~~~~~~~--~~~~~~---p~~~vP~L~~~~~-~~~es~aI~~yL~~~ 72 (202)
|+|-..||+|....-.+...+.. ++.+.+......+ +...++ ....+-+ ..+|. ...++.|+.+.+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 46778899999888777777653 4444442111111 111122 1233333 55664 999999998887664
No 217
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=43.42 E-value=1e+02 Score=20.85 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=28.0
Q ss_pred EEecCCCChhhHHHHHHHHHh----CCCcEEEEcCCCCC-chhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEK----GMDFEIRDIDLFNK-PDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~~~~~~~-~~~~~~~~p~~~vP~L~ 53 (202)
..|+.++|+.|+...-.+... +-.+..+.++.... ...+........+|+++
T Consensus 25 V~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v 81 (142)
T cd02950 25 VEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFV 81 (142)
T ss_pred EEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEE
Confidence 345678999998776444321 22244444444322 12333444456789776
No 218
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=41.32 E-value=79 Score=18.94 Aligned_cols=51 Identities=8% Similarity=0.047 Sum_probs=32.0
Q ss_pred EEecCCCChhhHHHHHHHHHh------CCCcEEEEcCCCCCchhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEK------GMDFEIRDIDLFNKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~------gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 53 (202)
.+|+.++|++|+...-.+... +-.+....++... ...+.+...-..+|++.
T Consensus 20 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 20 VEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGVRGYPTIK 76 (101)
T ss_pred EEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCCCCCCEEE
Confidence 467778999999877665432 2345556665543 33444444557889876
No 219
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=40.01 E-value=1.6e+02 Score=21.98 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=40.2
Q ss_pred EEecCCCChhhHHHHHHHHH-----hCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEe------cchHHHHHH
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE-----KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLIL------YESNIINEY 68 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~------~es~aI~~y 68 (202)
..+|-++|+.|+...-.+.. .| .+....++.... +++.+...-..+|++. .+|..+ .....|.++
T Consensus 57 V~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~-~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~f 134 (224)
T PTZ00443 57 VKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA-LNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAF 134 (224)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc-HHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHH
Confidence 35677999999876544332 22 244445555432 3444444567889887 666433 123456666
Q ss_pred HHhcCC
Q psy3758 69 IDERFP 74 (202)
Q Consensus 69 L~~~~~ 74 (202)
+.+.+.
T Consensus 135 i~~~~~ 140 (224)
T PTZ00443 135 ALGDFK 140 (224)
T ss_pred HHHHHH
Confidence 666653
No 220
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=39.74 E-value=57 Score=20.91 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=21.9
Q ss_pred EecCCCChhhHHHHHHHHHhCCCcEEEE
Q psy3758 3 LYSGTTCPFSQRCRLVLFEKGMDFEIRD 30 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~ 30 (202)
|......|...-++.+++++|+|++...
T Consensus 60 LVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 60 LVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 4455667888888889999999988765
No 221
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=39.01 E-value=1.4e+02 Score=21.20 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhcchhcC-CCee-ecCCchHHHHHHHHHH-HHHhhcCccc---CCCChhHHHHHHHHhc
Q psy3758 117 KGYKRAREEIRDRLITLAPLFLK-NKYM-LGDEFSMLDVVIAPLL-WRLDYYGINL---SKSASPLIKYAERIFS 185 (202)
Q Consensus 117 ~~~~~~~~~~~~~l~~le~~L~~-~~fl-~G~~~s~aD~~l~~~l-~~~~~~~~~~---~~~~p~l~~~~~~~~~ 185 (202)
...+...+.++..++.+++.+.. ..|+ .|+.+..|-++++=.+ .+.+..-..+ ..-.|.+.+|.+|++.
T Consensus 76 ~i~~~~v~~LE~~id~~~~~l~~l~~FiLPggs~~~A~lh~aRtv~RRAER~~v~l~~~~~v~~~~l~ylNRLSD 150 (171)
T TIGR00636 76 KITEEDVKWLEERIDQYRKELPPLKLFVLPGGTPAAAFLHVARTVARRAERRVVALLKEEEINEVVLVYLNRLSD 150 (171)
T ss_pred CcCHHHHHHHHHHHHHHHhhCCCCCceeeCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35556667778888888888865 5665 4788999988888544 3443321111 1124778899998765
No 222
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=38.98 E-value=27 Score=22.14 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=19.4
Q ss_pred EEecCCCChhhHHHHHHHHH-------hCCCcEEEEcCCC
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE-------KGMDFEIRDIDLF 34 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~-------~gi~~~~~~~~~~ 34 (202)
.+++.++||+|++..-.+.. ..-.+..+.++..
T Consensus 10 ~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 10 VVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 45678999999988655541 1124666666654
No 223
>PRK10996 thioredoxin 2; Provisional
Probab=38.87 E-value=1.2e+02 Score=20.37 Aligned_cols=56 Identities=4% Similarity=0.107 Sum_probs=34.2
Q ss_pred EEecCCCChhhHHHHHHHHH----hCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE----KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLI 58 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 58 (202)
..++.++|+.|+...-.+.. .+-.+....++.+.. +++.+...-..+|+++ .+|..
T Consensus 57 v~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~~~V~~~Ptlii~~~G~~ 118 (139)
T PRK10996 57 IDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RELSARFRIRSIPTIMIFKNGQV 118 (139)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HHHHHhcCCCccCEEEEEECCEE
Confidence 35677999999976544432 233456666666543 3444444567899887 66654
No 224
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=37.79 E-value=97 Score=18.96 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=30.6
Q ss_pred EEecCCCChhhHHHHHHHHH----hC--CCcEEEEcCCCCCchhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE----KG--MDFEIRDIDLFNKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~----~g--i~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 53 (202)
..++.++|+.|+...-.+.. .. -.+....++.....+.+.....-..+|+++
T Consensus 23 v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 23 VEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred EEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 45678999999865443322 12 236666666544233444444567789886
No 225
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=37.74 E-value=71 Score=20.76 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=29.4
Q ss_pred EEecCCCChhhHHHHHHHHHhCC----CcEEEEcCCCCCchhhh-hhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGM----DFEIRDIDLFNKPDNIF-RMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi----~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~ 53 (202)
..++-++|+.|+...-.+....- ......++.+... .+. +..--..+|+|.
T Consensus 34 V~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 34 VMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-GKCRKQKHFFYFPVIH 89 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-HHHHHhcCCcccCEEE
Confidence 35678999999987665554322 2444556654333 232 233345788876
No 226
>PRK09266 hypothetical protein; Provisional
Probab=37.22 E-value=60 Score=24.64 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=37.9
Q ss_pred HHHHhCCCcEEEEcCCCC---CchhhhhhCCCCCccEEEeCCEEecchHHHHHHHHhcC
Q psy3758 18 VLFEKGMDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 73 (202)
Q Consensus 18 ~l~~~gi~~~~~~~~~~~---~~~~~~~~~p~~~vP~L~~~~~~~~es~aI~~yL~~~~ 73 (202)
.+...|+++++..++..+ -.+.|.-.+-.|-+|+-..|+..+.+...|.+.|.+.|
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHH
Confidence 345669999999988743 22333333346899999988877765567777776655
No 227
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=35.87 E-value=46 Score=20.36 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=28.8
Q ss_pred EEecCCCChhhHHHHHHHH-----HhCC-CcEEEEcCCCCCchhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLF-----EKGM-DFEIRDIDLFNKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~-----~~gi-~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 53 (202)
..|+.++|+.|+...-.+. ..+- .+....++... ..++........+|.+.
T Consensus 18 i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 18 VEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-EKDLASRFGVSGFPTIK 74 (102)
T ss_pred EEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-hHHHHHhCCCCcCCEEE
Confidence 5678899999987544332 2222 14444444432 23444444567799875
No 228
>PTZ00102 disulphide isomerase; Provisional
Probab=35.56 E-value=2.4e+02 Score=23.24 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=42.6
Q ss_pred EEecCCCChhhHHHHHHH-------HHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEE--e---cchHHHHH
Q psy3758 2 VLYSGTTCPFSQRCRLVL-------FEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLI--L---YESNIINE 67 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l-------~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~--~---~es~aI~~ 67 (202)
..++.++|++|++..-.+ ...+-++....++..... ++.+...-..+|++. .+|.. . .....|.+
T Consensus 54 v~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l~~ 132 (477)
T PTZ00102 54 VKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-ELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADGIVS 132 (477)
T ss_pred EEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-HHHHhcCCCcccEEEEEECCceEEecCCCCHHHHHH
Confidence 467789999999765221 222345666666654332 333333455689876 55532 1 24566889
Q ss_pred HHHhcCC
Q psy3758 68 YIDERFP 74 (202)
Q Consensus 68 yL~~~~~ 74 (202)
++.+..+
T Consensus 133 ~l~~~~~ 139 (477)
T PTZ00102 133 WIKKLTG 139 (477)
T ss_pred HHHHhhC
Confidence 9988754
No 229
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=35.20 E-value=78 Score=26.41 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=36.4
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCC-----EEecchH
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-----LILYESN 63 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~-----~~~~es~ 63 (202)
+++.+-.|..++.+..+|+...++|+.+.+.. .|.+|+|.+++ .+|+|+.
T Consensus 64 VFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~~------------kg~lP~LT~~~kGRy~lII~ENl 118 (487)
T PF12062_consen 64 VFVESQYSQLGQDIVAILESNRFKYKVEIASG------------KGDLPVLTDNDKGRYSLIIFENL 118 (487)
T ss_pred EEEeeccchhhHHHHHHHHhceeeEEEEEccC------------CCCCCccccCCCCcEEEEEehhH
Confidence 34555678899999999999999999887532 45677777543 4566654
No 230
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=33.57 E-value=1.3e+02 Score=19.74 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=32.5
Q ss_pred ecCCCChhhHHHHHHHHHhCC--C--cEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEE
Q psy3758 4 YSGTTCPFSQRCRLVLFEKGM--D--FEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLI 58 (202)
Q Consensus 4 y~~~~s~~~~~v~~~l~~~gi--~--~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 58 (202)
++-++||-|+.+.-.+...-- + .....++.+.. +++-....-..+|++. .+|..
T Consensus 21 F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 21 FGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-PDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred EECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-HHHHHHcCCCCCCEEEEEECCEE
Confidence 566889889877655543321 1 34556666543 3444444556799887 66654
No 231
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=33.14 E-value=1.2e+02 Score=18.78 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=29.4
Q ss_pred EEecCCCChhhHHHHHHHHHh----CCCcEEEEcCCCCCchhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEK----GMDFEIRDIDLFNKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 53 (202)
..|+.++|+.|+...=.+... +-.+....++.... .++.+...-..+|++.
T Consensus 24 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 24 VDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHcCCCcccEEE
Confidence 456779999998765443322 21244555555433 3344444567889876
No 232
>PHA03075 glutaredoxin-like protein; Provisional
Probab=31.67 E-value=72 Score=21.06 Aligned_cols=65 Identities=17% Similarity=0.323 Sum_probs=45.3
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEEeCC-EEecchHHHHHHHHhcC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERF 73 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~-~~~~es~aI~~yL~~~~ 73 (202)
+.|+|=|.|+-|+.+.-+|...--.|+..+++.-.. ....|++-+|..++ ..+ -..+.+|+...+
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf------FsK~g~v~~lg~d~~y~l--Inn~~~~lgne~ 70 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYDILRVNILSF------FSKDGQVKVLGMDKGYTL--INNFFKHLGNEY 70 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee------eccCCceEEEecccceeh--HHHHHHhhcccE
Confidence 358899999999999999988888999999986321 12246666666433 222 345667776544
No 233
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=31.62 E-value=80 Score=22.03 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHhCCCcEEEEcCCCCCchhh
Q psy3758 10 PFSQRCRLVLFEKGMDFEIRDIDLFNKPDNI 40 (202)
Q Consensus 10 ~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~ 40 (202)
+..+.+.-.|+..||||+...++....++.+
T Consensus 16 ~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m 46 (162)
T COG0041 16 DTMKKAAEILEEFGVPYEVRVVSAHRTPEKM 46 (162)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeccCCHHHH
Confidence 5677888899999999999999887655433
No 234
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=30.98 E-value=86 Score=18.62 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=17.3
Q ss_pred CEEecCCCChhhHHHHHHHHHh
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEK 22 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~ 22 (202)
|.+|....||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5678889999999887766553
No 235
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=30.72 E-value=74 Score=22.34 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=24.9
Q ss_pred CEEecCCCChhhHHHH----HHHHHh-CCCcEEEEcCCC
Q psy3758 1 MVLYSGTTCPFSQRCR----LVLFEK-GMDFEIRDIDLF 34 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~----~~l~~~-gi~~~~~~~~~~ 34 (202)
|++|+...||||.... -+++.. ++.++.+++.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 4678889999998544 444455 788888888764
No 236
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=30.38 E-value=65 Score=21.19 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=20.5
Q ss_pred CCCccEEE-eCCEEecchHHHHHHHHh
Q psy3758 46 YGQVPILV-ERDLILYESNIINEYIDE 71 (202)
Q Consensus 46 ~~~vP~L~-~~~~~~~es~aI~~yL~~ 71 (202)
..++|.++ |+..+|++...|.+-+..
T Consensus 81 i~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 81 ITKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred ccccCEEEEcCCeEEecccHHHHHHHH
Confidence 45899998 666899999988776654
No 237
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=30.02 E-value=3.1e+02 Score=22.39 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=42.2
Q ss_pred EEecCCCChhhHHHHHHHH-----H--hCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEE-------ecchHHH
Q psy3758 2 VLYSGTTCPFSQRCRLVLF-----E--KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLI-------LYESNII 65 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~-----~--~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~-------~~es~aI 65 (202)
.+++.++|+.|+...-.+. + .+-.+....++.... .++.....-..+|++. .+|.. ..+...|
T Consensus 23 v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l 101 (462)
T TIGR01130 23 VEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGI 101 (462)
T ss_pred EEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCCccccEEEEEeCCccceeEecCCCCHHHH
Confidence 4677899999997653221 2 233356666666543 3344344455688776 44432 1245678
Q ss_pred HHHHHhcCC
Q psy3758 66 NEYIDERFP 74 (202)
Q Consensus 66 ~~yL~~~~~ 74 (202)
.+++.+..+
T Consensus 102 ~~~i~~~~~ 110 (462)
T TIGR01130 102 VKYMKKQSG 110 (462)
T ss_pred HHHHHHhcC
Confidence 888887754
No 238
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=29.43 E-value=1.4e+02 Score=18.30 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=30.0
Q ss_pred EEecCCCChhhHHHHHHHHH-----hCCCcEEEEcCCCCCchhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE-----KGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 53 (202)
..++.++|+.|+...-.+.. .+..+....++.... ..+.....-..+|++.
T Consensus 21 v~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 21 IEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLSGRFFVTALPTIY 76 (101)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHHHHcCCcccCEEE
Confidence 45677899999876644332 233455555555432 3344444567789887
No 239
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=28.76 E-value=67 Score=23.02 Aligned_cols=20 Identities=15% Similarity=0.519 Sum_probs=16.3
Q ss_pred EEecCCCChhhHHHHHHHHH
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE 21 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~ 21 (202)
.+|.-+.||||++..-.+..
T Consensus 82 ~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 82 YVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEECCCCccHHHHHHHHhh
Confidence 46677999999999887764
No 240
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.35 E-value=86 Score=18.41 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=25.7
Q ss_pred EecCCCChhhHHHHHHHHHhCCCcEEEEcCC
Q psy3758 3 LYSGTTCPFSQRCRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~ 33 (202)
+..|+....+.++.-.|...|++++..++..
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 4456777889999999999999999998754
No 241
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=28.18 E-value=59 Score=20.59 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhh-CCCCCccEEEeCCEEecchHHHHHHHHhcCCCCCCC
Q psy3758 11 FSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRM-NPYGQVPILVERDLILYESNIINEYIDERFPYPQLM 79 (202)
Q Consensus 11 ~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~-~p~~~vP~L~~~~~~~~es~aI~~yL~~~~~~~~l~ 79 (202)
-+....-.|...|.++-...=+......++.+. ...| ++ +..+.+++-..++.+||.+..++.+.+
T Consensus 18 ga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~G-i~--~~~~~i~ts~~~~~~~l~~~~~~~~v~ 84 (101)
T PF13344_consen 18 GAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLG-IP--VDEDEIITSGMAAAEYLKEHKGGKKVY 84 (101)
T ss_dssp THHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTT-TT----GGGEEEHHHHHHHHHHHHTTSSEEE
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcC-cC--CCcCEEEChHHHHHHHHHhcCCCCEEE
Confidence 344555567788888877765554444555532 2233 44 455788999999999999976655543
No 242
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=28.05 E-value=1.6e+02 Score=18.44 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=32.1
Q ss_pred EEecCCCChhhHHHHHHHHHh-----C-C----CcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEK-----G-M----DFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~-----g-i----~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
..++.++|+.|+...-.+... + . .+....++.... .++.....-..+|++. .+|.
T Consensus 23 v~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 23 VNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCCCcCCEEEEEeCCc
Confidence 356779999999776555321 1 1 244445555433 3444445567889886 4554
No 243
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=27.82 E-value=1.2e+02 Score=19.77 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=34.1
Q ss_pred EecCC--CChhhHHHHHHHHHhCCC----cEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEe
Q psy3758 3 LYSGT--TCPFSQRCRLVLFEKGMD----FEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLIL 59 (202)
Q Consensus 3 Ly~~~--~s~~~~~v~~~l~~~gi~----~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~ 59 (202)
.++.. .||-|+.+.-.|...--. .....++..+.+ ++-...--..+|+|+ .+|..+
T Consensus 33 ~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V~sIPTli~fkdGk~v 96 (111)
T cd02965 33 LLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGVLRTPALLFFRDGRYV 96 (111)
T ss_pred EecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCCCcCCEEEEEECCEEE
Confidence 44555 489899887666544332 334455655443 455555567899987 677654
No 244
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=27.57 E-value=97 Score=15.82 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=19.7
Q ss_pred CCCccEEEeCCEEecchHHHHHHHH
Q psy3758 46 YGQVPILVERDLILYESNIINEYID 70 (202)
Q Consensus 46 ~~~vP~L~~~~~~~~es~aI~~yL~ 70 (202)
.|.+|....++..+.....|.+|++
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 5778887667788888888888875
No 245
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=27.03 E-value=75 Score=21.28 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=24.1
Q ss_pred EEecCCCChhhHHHH----HHHHHh-CCCcEEEEcCCC-CCchhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCR----LVLFEK-GMDFEIRDIDLF-NKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~----~~l~~~-gi~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~ 53 (202)
.++.-++||-|+... -+++.. +|+++....+-. ..-..|+. +....+|+++
T Consensus 46 lvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 46 LVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp EEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEE
T ss_pred EEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEE
Confidence 345668999998543 334444 566666555421 11123344 6678999998
No 246
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=25.65 E-value=1.5e+02 Score=17.39 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCCccEEEeCCEEecchHHHHHHHHhcC
Q psy3758 46 YGQVPILVERDLILYESNIINEYIDERF 73 (202)
Q Consensus 46 ~~~vP~L~~~~~~~~es~aI~~yL~~~~ 73 (202)
..+-|++...| ..+|-.+|.+||.+..
T Consensus 13 lM~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 13 LMRDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp B-SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred HhhCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 34569998777 8899999999998833
No 247
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=24.76 E-value=1.8e+02 Score=18.01 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=30.8
Q ss_pred EEecCCCChhhHHHHHHHHHh----CCCcEEEEcCCCC-CchhhhhhCCCCCccEEE--eCCE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEK----GMDFEIRDIDLFN-KPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~~~~~~-~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
..++.++|+.|+...-.+... +-.+....++... ...++.....-..+|++. .+|.
T Consensus 23 v~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 23 VEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCC
Confidence 456779999998765333222 2223444455443 123444444566789887 4444
No 248
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=24.43 E-value=1.3e+02 Score=22.36 Aligned_cols=20 Identities=10% Similarity=0.441 Sum_probs=15.7
Q ss_pred EEecCCCChhhHHHHHHHHH
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE 21 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~ 21 (202)
.+|.-+.||||++..--+..
T Consensus 112 ~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 112 TVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEECCCChHHHHHHHHHHH
Confidence 46677999999999866654
No 249
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=24.26 E-value=57 Score=22.33 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHhcCccccc
Q psy3758 173 ASPLIKYAERIFSRPSYME 191 (202)
Q Consensus 173 ~p~l~~~~~~~~~~p~~~~ 191 (202)
.-.|++|.+|+..+|.+.+
T Consensus 111 r~~LqrfL~RV~~hP~L~~ 129 (140)
T cd06891 111 KANLQRWFNRVCSDPILIR 129 (140)
T ss_pred HHHHHHHHHHHhCChhhcc
Confidence 3679999999999997654
No 250
>PLN02309 5'-adenylylsulfate reductase
Probab=23.76 E-value=2.2e+02 Score=23.83 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=30.1
Q ss_pred EEecCCCChhhHHHHHHHH-----HhCCCcEEEEcCCCCCchhhhh-hCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLF-----EKGMDFEIRDIDLFNKPDNIFR-MNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~-----~~gi~~~~~~~~~~~~~~~~~~-~~p~~~vP~L~ 53 (202)
..||-++|+.|+.+.-.+. +.+-.+....++......++.. ...-..+|+++
T Consensus 370 V~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil 427 (457)
T PLN02309 370 VVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTIL 427 (457)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEE
Confidence 4678899999997664432 2344455566665412222322 23456889887
No 251
>KOG0743|consensus
Probab=23.64 E-value=2.3e+02 Score=23.68 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=36.0
Q ss_pred EecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhhhhh---CCCCCccEEEe
Q psy3758 3 LYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNIFRM---NPYGQVPILVE 54 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~~~~---~p~~~vP~L~~ 54 (202)
|||-|+++-+-.|.+++.+.+-++-...++--..+.++..+ .|...+=+++|
T Consensus 240 LYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 240 LYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIED 294 (457)
T ss_pred eeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEee
Confidence 89999999999999999998888655555443444455443 45555555553
No 252
>KOG0190|consensus
Probab=23.60 E-value=3.1e+02 Score=23.33 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=46.4
Q ss_pred EEecCCCChhhHHHH-------HHHHHhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEE------ecchHHHH
Q psy3758 2 VLYSGTTCPFSQRCR-------LVLFEKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLI------LYESNIIN 66 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~-------~~l~~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~------~~es~aI~ 66 (202)
.-||-+||+.|.+.. -.|...|-+.....||.... .++-......-.|+|. .||.. ..+.-.|+
T Consensus 47 VeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv 125 (493)
T KOG0190|consen 47 VEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIV 125 (493)
T ss_pred EEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHH
Confidence 456778898887543 34555566888888887533 2233334455678776 45532 34566799
Q ss_pred HHHHhcCC
Q psy3758 67 EYIDERFP 74 (202)
Q Consensus 67 ~yL~~~~~ 74 (202)
.||-++.+
T Consensus 126 ~wl~kq~g 133 (493)
T KOG0190|consen 126 KWLKKQSG 133 (493)
T ss_pred HHHHhccC
Confidence 99988764
No 253
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=23.41 E-value=1.8e+02 Score=17.62 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=27.8
Q ss_pred EEecCCCChhhHHHHHHHHH-----hC-CCcEEEEcCCCCCchhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLFE-----KG-MDFEIRDIDLFNKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~-----~g-i~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 53 (202)
.+++.++|+.|+...-.+.. .+ ..+....++.... + .........+|++.
T Consensus 23 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~-~~~~~~~~~~Pt~~ 78 (104)
T cd02995 23 VEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-D-VPSEFVVDGFPTIL 78 (104)
T ss_pred EEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-h-hhhhccCCCCCEEE
Confidence 46778999999976544332 23 2355555655432 1 22221236889876
No 254
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=23.11 E-value=1.1e+02 Score=23.16 Aligned_cols=19 Identities=11% Similarity=0.440 Sum_probs=14.5
Q ss_pred EEecCCCChhhHHHHHHHH
Q psy3758 2 VLYSGTTCPFSQRCRLVLF 20 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~ 20 (202)
.+|.-+.||||++..--+.
T Consensus 122 ~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 122 YVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEECCCChhHHHHHHHHH
Confidence 4556689999999876654
No 255
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=22.91 E-value=1.5e+02 Score=18.93 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=25.1
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEE
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRD 30 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~ 30 (202)
|-|+|-++++-+.-++.++...|.++-...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 358999999999999999999997764444
No 256
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.62 E-value=1.5e+02 Score=21.37 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=22.5
Q ss_pred EecCCCChhhHHHHHHHHHh---CCCcEEEEcCCC
Q psy3758 3 LYSGTTCPFSQRCRLVLFEK---GMDFEIRDIDLF 34 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~---gi~~~~~~~~~~ 34 (202)
|+||..||.+.|.+.+.++. +...+....+..
T Consensus 5 lHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~ 39 (187)
T PF05728_consen 5 LHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP 39 (187)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC
Confidence 66999999999998776544 555655554443
No 257
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=22.47 E-value=81 Score=22.73 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=18.2
Q ss_pred CCEEecchHHHHHHHHhcCC
Q psy3758 55 RDLILYESNIINEYIDERFP 74 (202)
Q Consensus 55 ~~~~~~es~aI~~yL~~~~~ 74 (202)
.+..|+||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 46789999999999999997
No 258
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=22.40 E-value=1.9e+02 Score=17.54 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=27.0
Q ss_pred EEecCCCChhhHHHHHHHH-----HhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE
Q psy3758 2 VLYSGTTCPFSQRCRLVLF-----EKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV 53 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~-----~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~ 53 (202)
.+++.++|+.|+...-.+. +.+ .+....++..... ++.....-..+|++.
T Consensus 23 v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~-~~~~~~~i~~~P~~~ 77 (103)
T cd03001 23 VEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQ-SLAQQYGVRGFPTIK 77 (103)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchH-HHHHHCCCCccCEEE
Confidence 3566788999987653332 222 2445555554333 333333345689776
No 259
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.33 E-value=4.7e+02 Score=21.88 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcchhcCCCe
Q psy3758 63 NIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKY 142 (202)
Q Consensus 63 ~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~f 142 (202)
..+++||+++|+-+-+....+.--...+.|+..+...+. ...++..++.+.++.+.+...-..+++.++
T Consensus 246 ~~~a~~Lee~~GiP~~~~~~p~G~~~t~~~l~~l~~~~g-----------~~~~~~i~~er~~~~~~~~d~~~~l~gkrv 314 (455)
T PRK14476 246 RKAAEALEARTGVPYLVFPSLTGLEAVDRFIATLAQISG-----------RPVPAKYRRQRAQLQDAMLDGHFYFGGKRV 314 (455)
T ss_pred HHHHHHHHHHhCCCeEecCCCcChHHHHHHHHHHHHHHC-----------CCCcHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 468999999998653322222333334444444332111 012233444455555555555555667666
Q ss_pred eecCCc
Q psy3758 143 MLGDEF 148 (202)
Q Consensus 143 l~G~~~ 148 (202)
.+...+
T Consensus 315 ai~~~~ 320 (455)
T PRK14476 315 AIAAEP 320 (455)
T ss_pred EEEeCH
Confidence 554334
No 260
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=22.03 E-value=1.3e+02 Score=19.90 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=24.9
Q ss_pred cCCCChhhHHHHHHHHH-----hCCCcEEEEcCCCCCc--hhhhhhCCCCCccEEEeCC
Q psy3758 5 SGTTCPFSQRCRLVLFE-----KGMDFEIRDIDLFNKP--DNIFRMNPYGQVPILVERD 56 (202)
Q Consensus 5 ~~~~s~~~~~v~~~l~~-----~gi~~~~~~~~~~~~~--~~~~~~~p~~~vP~L~~~~ 56 (202)
...+||.|+.-.-.|.. .+-.++.+-+..+... ..+.+... -..|++.|.+
T Consensus 32 ~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~-~~~p~~~D~~ 89 (149)
T cd02970 32 RGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF-LPFPVYADPD 89 (149)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC-CCCeEEECCc
Confidence 35789999864433332 1233455555443221 12333332 3567777654
No 261
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=21.90 E-value=1.9e+02 Score=19.03 Aligned_cols=39 Identities=8% Similarity=-0.067 Sum_probs=30.9
Q ss_pred EEecCCCChhhHHHHHHHHHhCCCcEEEEcCCCCCchhh
Q psy3758 2 VLYSGTTCPFSQRCRLVLFEKGMDFEIRDIDLFNKPDNI 40 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~~~~~~~~~ 40 (202)
-|++-++++-+.-++.+++..+.++....+...-...++
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccc
Confidence 578999999999999999999999988888764333333
No 262
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=21.87 E-value=1.4e+02 Score=22.63 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=24.2
Q ss_pred EEecCCCChhhHH----HHHHHHHhCCCcEEEEcCC
Q psy3758 2 VLYSGTTCPFSQR----CRLVLFEKGMDFEIRDIDL 33 (202)
Q Consensus 2 ~Ly~~~~s~~~~~----v~~~l~~~gi~~~~~~~~~ 33 (202)
.+++.+.||||+. ++.+....|+++-.+.+|.
T Consensus 148 ~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 148 MFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred EEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 4567788999994 5566667799888888775
No 263
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=21.81 E-value=2e+02 Score=17.45 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=30.6
Q ss_pred EEecCCCChhhHHHHHHH-----HHhC--CCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCE
Q psy3758 2 VLYSGTTCPFSQRCRLVL-----FEKG--MDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDL 57 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l-----~~~g--i~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 57 (202)
..++.++|+.|+...-.+ ...+ ..+....++..... ...+...-..+|++. .+|.
T Consensus 21 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 21 VKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCCCcCCEEEEEeCCC
Confidence 356778899998664332 3333 24555666654332 233333456789876 4553
No 264
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=21.58 E-value=3.3e+02 Score=20.90 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhcCC-Ceee----------cCCchHHHHHHHHHHHHHhhc
Q psy3758 113 KTSIKGYKRAREEIRDRLITLAPLFLKN-KYML----------GDEFSMLDVVIAPLLWRLDYY 165 (202)
Q Consensus 113 ~~~~~~~~~~~~~~~~~l~~le~~L~~~-~fl~----------G~~~s~aD~~l~~~l~~~~~~ 165 (202)
..+........+++...+..++..|+.+ .|++ |....-.|..-+.+-..+...
T Consensus 119 ~~d~~~~~~~~~~~l~ll~dlD~lL~t~~~f~Lg~Wi~~Ar~~g~~~~e~~~yE~NAR~qIT~W 182 (267)
T PF12972_consen 119 SKDIEAFKALSARFLELLDDLDRLLATNPEFLLGKWIEDARAWGTTPEEKDLYEYNARNQITLW 182 (267)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHHTT-GGGBHHHHHHHHHHSSTT--HHHHHHHHHHHHTTTS
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc
Confidence 4467778888899999999999999874 3443 455666666666655544444
No 265
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=21.37 E-value=1.4e+02 Score=22.22 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=34.7
Q ss_pred HHHHhCCCcEEEEcCCC---CCchhhhhhCCCCCccEEEeCCEEe--cchHHHHHHHHh
Q psy3758 18 VLFEKGMDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLIL--YESNIINEYIDE 71 (202)
Q Consensus 18 ~l~~~gi~~~~~~~~~~---~~~~~~~~~~p~~~vP~L~~~~~~~--~es~aI~~yL~~ 71 (202)
.+...|+++++..+... +..+-|.-.+..|-+|+-..++..+ .....|.+.|.+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHH
Confidence 45667999999988764 2233333334468889998777665 344566666644
No 266
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=21.08 E-value=3.3e+02 Score=20.51 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=25.9
Q ss_pred CEEecCCCChhhHHHHHHHHHhCCCcEEEEcC
Q psy3758 1 MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDID 32 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~~~ 32 (202)
|-||+-|+++-+--++++..+.|.++....-.
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~ 84 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSGP 84 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEECC
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccch
Confidence 35899999999999999999999999877654
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=3.9e+02 Score=21.01 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=45.9
Q ss_pred EEecCCCChhhHHHHHHHH----HhCCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEec------chHHHHHHH
Q psy3758 2 VLYSGTTCPFSQRCRLVLF----EKGMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLILY------ESNIINEYI 69 (202)
Q Consensus 2 ~Ly~~~~s~~~~~v~~~l~----~~gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~~------es~aI~~yL 69 (202)
.++|.++|+-|....=.|+ +.+=.|....|+.+..+ ..-....-..+|+++ -+|+.|- .-..|-++|
T Consensus 48 V~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p-~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~l 126 (304)
T COG3118 48 VDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP-MVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFL 126 (304)
T ss_pred EEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch-hHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHH
Confidence 5678888988887665443 33345777777775432 333445566889776 5664432 234788999
Q ss_pred HhcCC
Q psy3758 70 DERFP 74 (202)
Q Consensus 70 ~~~~~ 74 (202)
++..|
T Consensus 127 d~~~~ 131 (304)
T COG3118 127 DKVLP 131 (304)
T ss_pred HHhcC
Confidence 98765
No 268
>PF13961 DUF4219: Domain of unknown function (DUF4219)
Probab=20.59 E-value=65 Score=14.92 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=13.8
Q ss_pred cCCCChhhHHHHHHHHHhCC
Q psy3758 5 SGTTCPFSQRCRLVLFEKGM 24 (202)
Q Consensus 5 ~~~~s~~~~~v~~~l~~~gi 24 (202)
+.+.+.++.++++.|...++
T Consensus 3 g~NY~~W~~~M~~~L~~~~l 22 (27)
T PF13961_consen 3 GTNYSTWKIRMKAYLESQDL 22 (27)
T ss_pred ccCHHHHHHHHHHHHHHcch
Confidence 34555677888888887763
No 269
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=20.43 E-value=1.7e+02 Score=20.47 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=20.7
Q ss_pred CEEecCCCChhhHHHHHH----HHHhCCCcEEEEcC
Q psy3758 1 MVLYSGTTCPFSQRCRLV----LFEKGMDFEIRDID 32 (202)
Q Consensus 1 ~~Ly~~~~s~~~~~v~~~----l~~~gi~~~~~~~~ 32 (202)
|++|+-..||||....-. ....++.++.+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 567888999999865433 33446665555553
No 270
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.04 E-value=1.1e+02 Score=22.12 Aligned_cols=55 Identities=15% Similarity=0.037 Sum_probs=31.9
Q ss_pred EecCCCChhhHHHHHHHHHh---CCCcEEEEcCCCCCchhhhhhCCCCCccEEE--eCCEEecc
Q psy3758 3 LYSGTTCPFSQRCRLVLFEK---GMDFEIRDIDLFNKPDNIFRMNPYGQVPILV--ERDLILYE 61 (202)
Q Consensus 3 Ly~~~~s~~~~~v~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~~e 61 (202)
-++.++|+.|+.+.-.|... --...++.++.... ....+-..+|+++ .+|..+..
T Consensus 108 ~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~----~~~~~i~~lPTlliyk~G~~v~~ 167 (192)
T cd02988 108 HLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC----IPNYPDKNLPTILVYRNGDIVKQ 167 (192)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh----HhhCCCCCCCEEEEEECCEEEEE
Confidence 35668888888765444322 12244555554321 2345678999887 67765443
Done!