Query psy3759
Match_columns 844
No_of_seqs 671 out of 4791
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:50:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0052 RpsB Ribosomal protein 100.0 2.4E-74 5.3E-79 579.9 20.2 224 2-226 3-226 (252)
2 PRK12311 rpsB 30S ribosomal pr 100.0 9.1E-68 2E-72 566.0 20.4 221 5-225 1-221 (326)
3 TIGR01011 rpsB_bact ribosomal 100.0 2.7E-67 5.8E-72 542.2 21.2 222 3-224 2-223 (225)
4 PRK05299 rpsB 30S ribosomal pr 100.0 6E-67 1.3E-71 548.3 21.7 223 3-225 4-226 (258)
5 CHL00067 rps2 ribosomal protei 100.0 5.9E-65 1.3E-69 526.5 20.9 223 2-224 7-229 (230)
6 PF00318 Ribosomal_S2: Ribosom 100.0 1.5E-59 3.2E-64 483.0 18.6 211 8-224 1-211 (211)
7 COG0264 Tsf Translation elonga 100.0 6.7E-57 1.5E-61 464.5 20.5 219 221-446 4-228 (296)
8 cd01425 RPS2 Ribosomal protein 100.0 6.4E-57 1.4E-61 457.5 17.5 193 8-222 1-193 (193)
9 COG0233 Frr Ribosome recycling 100.0 6E-56 1.3E-60 429.0 20.1 184 661-844 4-187 (187)
10 TIGR01012 Sa_S2_E_A ribosomal 100.0 3.7E-55 8E-60 436.8 16.4 174 2-225 3-177 (196)
11 PRK04020 rps2P 30S ribosomal p 100.0 2.2E-54 4.9E-59 433.8 15.7 173 3-225 10-183 (204)
12 PRK09377 tsf elongation factor 100.0 2.8E-53 6.1E-58 448.3 21.9 205 222-428 5-211 (290)
13 TIGR00116 tsf translation elon 100.0 3.9E-53 8.5E-58 447.2 21.9 205 222-428 4-211 (290)
14 PRK00083 frr ribosome recyclin 100.0 3.4E-52 7.3E-57 415.4 21.7 183 662-844 3-185 (185)
15 KOG0832|consensus 100.0 2.8E-53 6E-58 417.2 13.2 197 2-226 47-243 (251)
16 PTZ00254 40S ribosomal protein 100.0 1.4E-52 3.1E-57 429.3 14.8 174 3-225 13-187 (249)
17 TIGR00496 frr ribosome recycli 100.0 4.5E-51 9.7E-56 404.1 20.4 175 670-844 2-176 (176)
18 cd00520 RRF Ribosome recycling 100.0 9.9E-50 2.1E-54 397.5 20.9 178 665-842 2-179 (179)
19 PF01765 RRF: Ribosome recycli 100.0 4.2E-44 9.1E-49 354.4 19.4 165 678-842 1-165 (165)
20 PRK12332 tsf elongation factor 100.0 6.4E-42 1.4E-46 343.8 16.2 147 222-368 4-198 (198)
21 CHL00098 tsf elongation factor 100.0 3.8E-41 8.3E-46 337.7 15.6 148 223-370 2-198 (200)
22 KOG4759|consensus 100.0 2.9E-39 6.3E-44 326.5 18.4 182 661-844 81-263 (263)
23 KOG1071|consensus 100.0 1.6E-39 3.5E-44 334.3 16.3 187 222-408 46-281 (340)
24 COG0528 PyrH Uridylate kinase 100.0 8.7E-38 1.9E-42 314.3 18.5 233 421-655 5-238 (238)
25 PRK14556 pyrH uridylate kinase 100.0 1.9E-36 4.2E-41 314.2 20.5 233 421-655 15-248 (249)
26 PRK14558 pyrH uridylate kinase 100.0 8E-34 1.7E-38 297.9 21.2 229 423-655 2-230 (231)
27 PRK00358 pyrH uridylate kinase 100.0 8.3E-34 1.8E-38 298.1 20.2 230 423-654 2-231 (231)
28 PF00889 EF_TS: Elongation fac 100.0 2.2E-34 4.8E-39 296.7 14.5 154 274-429 1-159 (221)
29 cd04239 AAK_UMPK-like AAK_UMPK 100.0 4.4E-33 9.5E-38 292.1 20.4 228 424-654 2-229 (229)
30 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 4.5E-33 9.7E-38 292.1 19.4 230 423-654 2-231 (231)
31 TIGR02075 pyrH_bact uridylate 100.0 5.3E-33 1.2E-37 291.8 19.8 231 422-654 2-233 (233)
32 PRK14557 pyrH uridylate kinase 100.0 4.3E-33 9.4E-38 292.8 18.5 237 420-658 3-241 (247)
33 COG0263 ProB Glutamate 5-kinas 100.0 9.8E-32 2.1E-36 283.8 16.9 225 421-656 6-260 (369)
34 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 1.8E-28 3.9E-33 263.3 17.8 231 420-654 7-284 (284)
35 PTZ00489 glutamate 5-kinase; P 100.0 3.2E-28 6.9E-33 257.9 18.4 229 420-656 7-260 (264)
36 PRK12314 gamma-glutamyl kinase 100.0 3.1E-28 6.7E-33 259.9 18.4 231 421-656 9-265 (266)
37 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 3.3E-28 7.2E-33 253.7 17.0 209 424-654 2-221 (221)
38 PRK13402 gamma-glutamyl kinase 100.0 3.9E-28 8.5E-33 268.3 18.3 232 420-656 4-258 (368)
39 TIGR02076 pyrH_arch uridylate 100.0 1.5E-27 3.3E-32 248.9 19.3 209 425-654 2-221 (221)
40 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 2.6E-27 5.7E-32 251.6 19.1 226 424-654 2-251 (251)
41 PRK05429 gamma-glutamyl kinase 99.9 3E-27 6.5E-32 263.7 19.9 232 421-656 8-262 (372)
42 TIGR01027 proB glutamate 5-kin 99.9 4E-27 8.6E-32 261.6 18.9 229 423-656 2-254 (363)
43 cd04241 AAK_FomA-like AAK_FomA 99.9 3.7E-27 7.9E-32 251.1 14.2 222 424-653 2-252 (252)
44 cd02115 AAK Amino Acid Kinases 99.9 1.3E-26 2.8E-31 246.3 18.0 208 445-653 12-248 (248)
45 cd04261 AAK_AKii-LysC-BS AAK_A 99.9 1.9E-26 4.1E-31 243.5 17.4 201 444-654 13-239 (239)
46 cd04246 AAK_AK-DapG-like AAK_A 99.9 1.9E-26 4.2E-31 243.5 16.5 201 444-654 13-239 (239)
47 COG1608 Predicted archaeal kin 99.9 1.2E-26 2.6E-31 233.3 12.9 225 425-655 4-252 (252)
48 KOG1154|consensus 99.9 2.2E-26 4.8E-31 228.1 11.3 232 421-656 9-276 (285)
49 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 2.3E-25 4.9E-30 236.4 19.8 212 424-654 33-262 (262)
50 cd04235 AAK_CK AAK_CK: Carbama 99.9 1.8E-25 4E-30 239.6 16.5 223 424-654 2-308 (308)
51 TIGR00746 arcC carbamate kinas 99.9 5.4E-25 1.2E-29 237.5 17.9 224 423-654 2-309 (310)
52 COG0548 ArgB Acetylglutamate k 99.9 1.2E-24 2.6E-29 226.5 19.1 214 438-655 10-265 (265)
53 COG0527 LysC Aspartokinases [A 99.9 5E-24 1.1E-28 240.7 25.0 326 442-779 13-443 (447)
54 PRK08841 aspartate kinase; Val 99.9 2.2E-24 4.7E-29 241.8 21.6 205 442-656 13-243 (392)
55 cd04234 AAK_AK AAK_AK: Amino A 99.9 1.3E-24 2.9E-29 227.5 18.5 190 444-654 13-227 (227)
56 PRK14058 acetylglutamate/acety 99.9 7.1E-25 1.5E-29 235.0 16.3 200 450-655 16-267 (268)
57 PRK06635 aspartate kinase; Rev 99.9 6.8E-24 1.5E-28 241.3 24.7 278 423-763 3-312 (404)
58 cd04260 AAK_AKi-DapG-BS AAK_AK 99.9 2E-24 4.4E-29 228.4 17.7 202 443-654 12-244 (244)
59 TIGR01092 P5CS delta l-pyrroli 99.9 2.7E-24 5.8E-29 258.4 20.7 235 421-659 7-279 (715)
60 KOG0830|consensus 99.9 4.9E-25 1.1E-29 218.8 11.6 156 23-225 2-158 (254)
61 CHL00202 argB acetylglutamate 99.9 3.2E-24 7E-29 231.4 16.2 208 444-654 37-283 (284)
62 TIGR00656 asp_kin_monofn aspar 99.9 4.1E-24 8.9E-29 242.8 17.5 204 443-656 13-244 (401)
63 PRK12454 carbamate kinase-like 99.9 5.2E-24 1.1E-28 227.8 16.7 226 422-655 3-313 (313)
64 PLN02512 acetylglutamate kinas 99.9 8E-24 1.7E-28 230.7 17.4 208 445-655 62-309 (309)
65 PRK12353 putative amino acid k 99.9 7.6E-24 1.6E-28 230.5 17.0 226 422-655 3-314 (314)
66 PLN02418 delta-1-pyrroline-5-c 99.9 1.9E-23 4.2E-28 250.5 20.3 232 421-657 15-285 (718)
67 PRK12686 carbamate kinase; Rev 99.9 2.2E-23 4.7E-28 223.7 15.8 225 422-654 3-311 (312)
68 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.9 1.4E-23 3E-28 226.6 14.0 218 423-653 16-279 (279)
69 PRK00942 acetylglutamate kinas 99.9 3E-23 6.6E-28 224.5 13.9 218 422-655 24-282 (283)
70 PRK08210 aspartate kinase I; R 99.9 5.2E-23 1.1E-27 233.7 16.3 215 423-656 3-248 (403)
71 PRK07431 aspartate kinase; Pro 99.9 2.3E-22 5.1E-27 238.6 20.6 205 442-656 13-245 (587)
72 cd04244 AAK_AK-LysC-like AAK_A 99.9 1.8E-22 3.9E-27 218.6 17.2 149 497-654 125-298 (298)
73 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.9 1.4E-22 3E-27 215.9 14.4 192 449-653 14-257 (257)
74 cd04238 AAK_NAGK-like AAK_NAGK 99.9 1.7E-22 3.7E-27 215.7 14.8 202 445-653 13-256 (256)
75 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.9 4.5E-22 9.8E-27 211.8 15.1 201 446-653 14-252 (252)
76 cd04259 AAK_AK-DapDC AAK_AK-Da 99.9 1.8E-21 3.8E-26 210.0 19.5 153 493-654 112-295 (295)
77 PRK12352 putative carbamate ki 99.9 1.6E-21 3.6E-26 210.7 18.2 226 422-655 3-315 (316)
78 PRK09411 carbamate kinase; Rev 99.9 9.4E-22 2E-26 208.1 15.3 221 424-654 4-296 (297)
79 TIGR00657 asp_kinases aspartat 99.9 2.4E-21 5.3E-26 222.4 19.2 313 441-763 11-425 (441)
80 PRK12354 carbamate kinase; Rev 99.9 1.1E-21 2.4E-26 209.5 14.7 224 424-656 3-301 (307)
81 cd04245 AAK_AKiii-YclM-BS AAK_ 99.9 5.1E-21 1.1E-25 205.3 19.8 152 494-654 114-288 (288)
82 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.9 6.8E-21 1.5E-25 205.6 18.5 153 493-654 118-294 (294)
83 PF00696 AA_kinase: Amino acid 99.9 1.1E-21 2.5E-26 207.6 11.3 203 423-633 2-242 (242)
84 PRK08373 aspartate kinase; Val 99.9 6.1E-21 1.3E-25 208.7 17.1 156 490-656 102-280 (341)
85 PRK06291 aspartate kinase; Pro 99.9 1.1E-20 2.3E-25 217.8 19.9 157 491-656 123-304 (465)
86 cd04243 AAK_AK-HSDH-like AAK_A 99.9 1.2E-20 2.5E-25 203.6 18.8 153 493-654 117-293 (293)
87 TIGR00761 argB acetylglutamate 99.8 5.5E-21 1.2E-25 201.0 12.7 178 448-631 15-230 (231)
88 cd04240 AAK_UC AAK_UC: Unchara 99.8 1.4E-20 3E-25 193.2 14.5 180 448-653 12-203 (203)
89 PLN02551 aspartokinase 99.8 1.8E-19 4E-24 208.0 25.3 155 493-656 166-349 (521)
90 cd04258 AAK_AKiii-LysC-EC AAK_ 99.8 3.9E-20 8.5E-25 198.9 18.3 157 489-654 112-292 (292)
91 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.8 2.5E-20 5.5E-25 200.6 14.2 214 422-653 19-280 (280)
92 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.8 8.9E-20 1.9E-24 196.9 18.4 154 494-656 127-306 (306)
93 PRK09034 aspartate kinase; Rev 99.8 1E-19 2.2E-24 208.8 19.3 262 493-763 113-434 (454)
94 COG0549 ArcC Carbamate kinase 99.8 6.3E-20 1.4E-24 188.5 15.4 224 424-655 3-312 (312)
95 TIGR02078 AspKin_pair Pyrococc 99.8 6E-20 1.3E-24 199.8 16.1 142 505-656 107-271 (327)
96 PRK09084 aspartate kinase III; 99.8 1.2E-19 2.6E-24 207.7 18.9 156 491-656 108-290 (448)
97 PRK05279 N-acetylglutamate syn 99.8 6.2E-20 1.3E-24 211.0 16.1 217 422-656 26-292 (441)
98 cd04252 AAK_NAGK-fArgBP AAK_NA 99.8 3.3E-19 7.1E-24 189.0 15.7 196 448-653 14-248 (248)
99 TIGR01890 N-Ac-Glu-synth amino 99.8 6.1E-19 1.3E-23 201.8 19.1 202 448-657 34-281 (429)
100 cd04236 AAK_NAGS-Urea AAK_NAGS 99.8 4.6E-19 9.9E-24 188.0 15.1 195 443-653 48-271 (271)
101 PRK09436 thrA bifunctional asp 99.8 8.1E-18 1.8E-22 205.1 27.9 154 494-656 121-298 (819)
102 PRK05925 aspartate kinase; Pro 99.8 7.2E-19 1.6E-23 199.6 17.1 155 493-656 103-281 (440)
103 PRK09466 metL bifunctional asp 99.8 9.3E-19 2E-23 211.6 17.3 154 493-655 123-300 (810)
104 PRK08961 bifunctional aspartat 99.8 4.4E-18 9.5E-23 209.7 15.6 148 500-656 129-306 (861)
105 PRK09181 aspartate kinase; Val 99.7 7.7E-17 1.7E-21 184.6 23.1 160 486-655 135-311 (475)
106 cd04248 AAK_AK-Ectoine AAK_AK- 99.7 9.3E-17 2E-21 171.1 15.8 159 486-654 129-304 (304)
107 PRK04531 acetylglutamate kinas 99.7 1.7E-15 3.7E-20 169.7 17.4 176 448-657 52-251 (398)
108 PLN02825 amino-acid N-acetyltr 99.6 5.4E-15 1.2E-19 169.7 17.8 202 447-656 33-365 (515)
109 KOG0456|consensus 99.6 1.4E-15 3E-20 160.9 11.2 237 439-701 158-432 (559)
110 COG2054 Uncharacterized archae 99.6 2E-14 4.3E-19 138.3 14.9 173 462-655 26-210 (212)
111 COG0264 Tsf Translation elonga 99.5 6.2E-14 1.3E-18 146.2 11.5 157 184-370 74-280 (296)
112 TIGR00116 tsf translation elon 99.5 9.1E-14 2E-18 148.0 12.4 156 182-369 69-274 (290)
113 PF00889 EF_TS: Elongation fac 99.5 4.1E-14 9E-19 146.4 8.4 110 248-367 62-221 (221)
114 PRK09377 tsf elongation factor 99.5 2.3E-13 4.9E-18 145.0 12.0 155 182-369 70-274 (290)
115 CHL00098 tsf elongation factor 99.0 2.1E-10 4.5E-15 116.1 5.7 90 361-456 50-154 (200)
116 PRK12332 tsf elongation factor 98.9 1E-09 2.2E-14 111.2 6.2 91 360-456 52-156 (198)
117 KOG2436|consensus 98.1 7.2E-06 1.6E-10 91.6 8.9 147 444-590 107-288 (520)
118 PF00627 UBA: UBA/TS-N domain; 97.4 0.00014 3.1E-09 53.4 3.3 34 224-258 4-37 (37)
119 KOG1071|consensus 96.8 0.00032 6.9E-09 74.3 0.4 109 250-367 192-332 (340)
120 PRK05441 murQ N-acetylmuramic 96.8 0.02 4.4E-07 62.7 14.1 195 42-261 41-274 (299)
121 PRK12570 N-acetylmuramic acid- 96.3 0.072 1.6E-06 58.3 14.6 193 43-260 38-269 (296)
122 cd05007 SIS_Etherase N-acetylm 96.2 0.029 6.2E-07 60.1 10.3 188 43-255 29-255 (257)
123 PRK06369 nac nascent polypepti 95.8 0.013 2.8E-07 54.0 4.9 73 180-260 42-114 (115)
124 TIGR00274 N-acetylmuramic acid 95.3 0.2 4.3E-06 54.7 12.6 106 156-261 126-269 (291)
125 TIGR00264 alpha-NAC-related pr 94.8 0.021 4.5E-07 52.5 2.8 72 178-259 44-115 (116)
126 smart00165 UBA Ubiquitin assoc 94.5 0.043 9.3E-07 40.1 3.2 26 233-258 11-36 (37)
127 cd00194 UBA Ubiquitin Associat 94.1 0.057 1.2E-06 39.6 3.3 32 227-259 6-37 (38)
128 COG1308 EGD2 Transcription fac 86.0 0.72 1.6E-05 42.8 3.2 34 225-258 87-120 (122)
129 PF14555 UBA_4: UBA-like domai 84.7 0.91 2E-05 34.4 2.8 36 225-260 3-38 (43)
130 COG0279 GmhA Phosphoheptose is 82.0 33 0.00072 34.1 12.8 135 43-204 21-165 (176)
131 PF13580 SIS_2: SIS domain; PD 80.5 14 0.00031 35.4 10.0 115 46-186 18-137 (138)
132 PRK00414 gmhA phosphoheptose i 79.6 16 0.00036 37.2 10.6 49 155-203 110-164 (192)
133 cd05006 SIS_GmhA Phosphoheptos 77.1 16 0.00035 36.5 9.6 46 155-200 100-151 (177)
134 PRK10892 D-arabinose 5-phospha 75.2 26 0.00056 38.8 11.5 44 156-199 94-143 (326)
135 PF03943 TAP_C: TAP C-terminal 74.3 1.9 4.2E-05 34.0 1.6 37 225-261 3-39 (51)
136 TIGR03127 RuMP_HxlB 6-phospho 74.0 19 0.00042 35.9 9.3 38 156-193 72-113 (179)
137 PF10087 DUF2325: Uncharacteri 73.8 13 0.00028 33.4 7.1 27 65-91 1-27 (97)
138 PRK11557 putative DNA-binding 73.4 30 0.00064 37.3 11.2 46 155-200 174-225 (278)
139 PRK13938 phosphoheptose isomer 73.2 34 0.00074 35.1 10.8 52 155-206 112-169 (196)
140 cd05005 SIS_PHI Hexulose-6-pho 71.9 17 0.00037 36.4 8.3 48 156-203 75-130 (179)
141 smart00804 TAP_C C-terminal do 71.3 5.3 0.00011 33.1 3.5 37 224-260 14-50 (63)
142 COG2103 Predicted sugar phosph 71.2 51 0.0011 35.2 11.5 194 42-260 39-271 (298)
143 PRK10886 DnaA initiator-associ 70.8 56 0.0012 33.5 11.8 29 46-74 24-52 (196)
144 PRK15482 transcriptional regul 67.4 32 0.0007 37.2 9.9 46 156-201 182-233 (285)
145 PF13528 Glyco_trans_1_3: Glyc 64.7 35 0.00076 37.2 9.6 113 48-191 14-126 (318)
146 PRK13936 phosphoheptose isomer 63.5 1.3E+02 0.0029 30.6 13.0 51 155-205 110-169 (197)
147 cd06295 PBP1_CelR Ligand bindi 60.6 15 0.00032 38.9 5.5 47 155-202 63-109 (275)
148 PF12732 YtxH: YtxH-like prote 59.6 68 0.0015 27.2 8.3 33 761-793 20-52 (74)
149 PRK02947 hypothetical protein; 58.7 59 0.0013 34.6 9.6 30 46-75 23-52 (246)
150 PF12685 SpoIIIAH: SpoIIIAH-li 55.0 44 0.00096 34.2 7.7 63 775-837 83-147 (196)
151 PF13433 Peripla_BP_5: Peripla 52.3 30 0.00065 38.9 6.2 47 63-110 133-185 (363)
152 COG1778 Low specificity phosph 52.1 18 0.0004 35.5 3.9 54 578-642 12-67 (170)
153 PF08285 DPM3: Dolichol-phosph 50.5 7 0.00015 34.9 0.8 28 236-263 62-89 (91)
154 CHL00118 atpG ATP synthase CF0 49.6 86 0.0019 30.8 8.5 75 767-841 52-127 (156)
155 PRK15408 autoinducer 2-binding 49.3 2.2E+02 0.0049 31.6 12.8 44 155-199 79-124 (336)
156 PF08938 HBS1_N: HBS1 N-termin 48.6 8 0.00017 33.5 0.9 34 236-269 45-78 (79)
157 TIGR02726 phenyl_P_delta pheny 48.4 30 0.00066 34.6 5.1 59 578-646 11-70 (169)
158 PF02845 CUE: CUE domain; Int 48.2 28 0.00061 26.0 3.7 35 226-260 5-40 (42)
159 PTZ00295 glucosamine-fructose- 47.6 97 0.0021 37.9 10.3 47 156-202 369-421 (640)
160 PRK13608 diacylglycerol glucos 47.6 58 0.0012 37.0 7.9 34 155-189 103-136 (391)
161 PRK11337 DNA-binding transcrip 47.5 1.6E+02 0.0034 31.9 11.1 46 155-200 186-237 (292)
162 cd05009 SIS_GlmS_GlmD_2 SIS (S 47.0 90 0.002 29.7 8.2 44 156-199 61-109 (153)
163 cd05710 SIS_1 A subgroup of th 47.0 30 0.00066 32.2 4.6 49 156-204 47-101 (120)
164 PRK11382 frlB fructoselysine-6 46.4 1.2E+02 0.0027 33.7 10.2 93 157-256 93-192 (340)
165 PRK10780 periplasmic chaperone 46.1 1.8E+02 0.004 28.7 10.3 87 755-841 25-117 (165)
166 PRK01919 tatB sec-independent 45.5 1.7E+02 0.0037 29.1 9.5 67 766-841 22-88 (169)
167 PRK11070 ssDNA exonuclease Rec 44.8 1.5E+02 0.0032 35.8 10.9 104 41-189 48-160 (575)
168 PRK13937 phosphoheptose isomer 44.2 1.8E+02 0.0038 29.5 10.0 30 46-75 21-50 (188)
169 PRK00331 glucosamine--fructose 42.3 36 0.00078 41.2 5.5 98 155-257 335-447 (604)
170 PRK06904 replicative DNA helic 41.7 2E+02 0.0043 33.8 11.2 74 24-102 209-289 (472)
171 PRK09165 replicative DNA helic 41.5 2.9E+02 0.0063 32.7 12.6 88 24-113 205-311 (497)
172 cd06278 PBP1_LacI_like_2 Ligan 41.5 43 0.00094 34.9 5.4 59 155-217 53-111 (266)
173 PRK13454 F0F1 ATP synthase sub 41.3 1.3E+02 0.0028 30.4 8.4 23 778-800 83-105 (181)
174 PF04413 Glycos_transf_N: 3-De 40.8 1.2E+02 0.0027 30.7 8.2 30 156-185 95-124 (186)
175 PRK06774 para-aminobenzoate sy 40.5 81 0.0017 31.9 6.9 30 156-186 43-79 (191)
176 PLN02335 anthranilate synthase 40.2 78 0.0017 33.1 6.9 37 59-95 14-50 (222)
177 PF04007 DUF354: Protein of un 40.0 2.4E+02 0.0052 31.5 11.0 32 156-190 83-114 (335)
178 COG4069 Uncharacterized protei 39.2 28 0.00061 37.4 3.3 35 157-191 267-301 (367)
179 cd05013 SIS_RpiR RpiR-like pro 39.0 63 0.0014 30.0 5.5 47 156-202 60-112 (139)
180 cd06271 PBP1_AglR_RafR_like Li 38.6 47 0.001 34.7 5.0 57 156-216 59-115 (268)
181 PRK13461 F0F1 ATP synthase sub 38.5 1.6E+02 0.0035 28.8 8.5 74 768-841 36-110 (159)
182 TIGR03590 PseG pseudaminic aci 38.4 3.2E+02 0.0069 29.4 11.6 49 156-204 80-128 (279)
183 cd05014 SIS_Kpsf KpsF-like pro 38.0 53 0.0011 30.5 4.8 47 155-201 46-98 (128)
184 PF03480 SBP_bac_7: Bacterial 37.8 1.4E+02 0.0029 32.3 8.6 64 763-829 218-285 (286)
185 PRK08006 replicative DNA helic 37.7 3E+02 0.0066 32.3 11.9 76 23-103 211-292 (471)
186 COG4008 Predicted metal-bindin 37.2 40 0.00087 31.5 3.5 28 234-262 125-152 (153)
187 PF06518 DUF1104: Protein of u 36.9 1.2E+02 0.0027 27.2 6.5 60 765-830 23-83 (93)
188 PF05008 V-SNARE: Vesicle tran 36.8 1.2E+02 0.0026 25.9 6.4 34 761-794 15-48 (79)
189 TIGR01135 glmS glucosamine--fr 36.5 64 0.0014 39.1 6.3 48 155-202 337-390 (607)
190 cd06294 PBP1_ycjW_transcriptio 36.3 49 0.0011 34.6 4.8 57 156-216 60-117 (270)
191 PRK05759 F0F1 ATP synthase sub 36.3 1.8E+02 0.004 28.2 8.5 31 811-841 79-109 (156)
192 PRK08840 replicative DNA helic 35.9 2.9E+02 0.0062 32.4 11.3 75 24-103 205-285 (464)
193 PRK14473 F0F1 ATP synthase sub 35.9 1.9E+02 0.004 28.6 8.5 29 813-841 85-113 (164)
194 PRK13455 F0F1 ATP synthase sub 35.6 1.8E+02 0.0039 29.3 8.5 75 767-841 57-132 (184)
195 PRK11302 DNA-binding transcrip 35.6 1.6E+02 0.0035 31.6 8.7 46 156-201 175-225 (284)
196 cd05008 SIS_GlmS_GlmD_1 SIS (S 35.6 46 0.00099 30.8 3.9 38 155-192 45-86 (126)
197 PRK07353 F0F1 ATP synthase sub 35.5 2E+02 0.0044 27.4 8.5 74 768-841 36-110 (140)
198 PRK14472 F0F1 ATP synthase sub 35.3 1.9E+02 0.0041 28.9 8.5 49 783-841 75-123 (175)
199 PRK14101 bifunctional glucokin 35.3 1.9E+02 0.0041 35.3 10.2 47 156-202 515-566 (638)
200 PRK08475 F0F1 ATP synthase sub 35.1 2E+02 0.0043 28.7 8.5 74 767-840 52-126 (167)
201 PLN02372 violaxanthin de-epoxi 34.7 1.7E+02 0.0038 33.2 8.5 72 729-800 327-405 (455)
202 PRK08404 V-type ATP synthase s 34.5 3.5E+02 0.0076 24.7 9.3 31 771-801 3-33 (103)
203 COG0707 MurG UDP-N-acetylgluco 34.4 1.1E+02 0.0023 34.6 7.2 111 49-193 14-127 (357)
204 smart00546 CUE Domain that may 33.8 54 0.0012 24.6 3.3 35 226-260 6-41 (43)
205 PRK11543 gutQ D-arabinose 5-ph 33.7 1.9E+02 0.0042 31.6 9.2 45 155-199 88-138 (321)
206 TIGR00587 nfo apurinic endonuc 33.6 1.3E+02 0.0028 32.4 7.5 74 712-785 26-99 (274)
207 PRK05670 anthranilate synthase 33.1 83 0.0018 31.8 5.6 30 66-95 2-31 (189)
208 PRK14475 F0F1 ATP synthase sub 32.9 2.2E+02 0.0048 28.2 8.5 75 767-841 40-115 (167)
209 TIGR00661 MJ1255 conserved hyp 32.8 3E+02 0.0065 30.1 10.5 29 156-187 93-121 (321)
210 PRK07352 F0F1 ATP synthase sub 32.8 2.2E+02 0.0048 28.4 8.5 75 766-841 49-124 (174)
211 PRK06231 F0F1 ATP synthase sub 32.6 2.1E+02 0.0046 29.5 8.5 21 812-832 135-155 (205)
212 PRK13460 F0F1 ATP synthase sub 32.3 2.2E+02 0.0049 28.3 8.5 28 814-841 94-121 (173)
213 PF06972 DUF1296: Protein of u 32.0 57 0.0012 26.6 3.2 37 225-261 8-45 (60)
214 PRK05892 nucleoside diphosphat 31.7 2.6E+02 0.0056 27.7 8.6 68 762-837 6-73 (158)
215 PF03938 OmpH: Outer membrane 31.6 3.6E+02 0.0079 26.1 9.8 78 755-832 18-98 (158)
216 PF03179 V-ATPase_G: Vacuolar 31.5 2.1E+02 0.0045 26.0 7.4 79 766-844 24-104 (105)
217 PRK13428 F0F1 ATP synthase sub 31.5 1.7E+02 0.0038 34.0 8.5 75 767-841 31-106 (445)
218 PF03437 BtpA: BtpA family; I 31.5 1.6E+02 0.0035 31.5 7.6 85 567-656 134-233 (254)
219 PRK09174 F0F1 ATP synthase sub 31.3 2.3E+02 0.005 29.2 8.5 57 780-836 107-164 (204)
220 COG4831 Roadblock/LC7 domain [ 31.3 44 0.00095 29.8 2.6 29 277-309 78-106 (109)
221 PRK14471 F0F1 ATP synthase sub 31.3 2.5E+02 0.0053 27.7 8.5 25 816-840 88-112 (164)
222 TIGR00441 gmhA phosphoheptose 31.2 72 0.0016 31.1 4.6 49 155-203 78-132 (154)
223 cd06299 PBP1_LacI_like_13 Liga 31.1 70 0.0015 33.3 4.9 45 155-200 54-98 (265)
224 PF09851 SHOCT: Short C-termin 31.1 65 0.0014 22.6 3.0 26 794-819 4-29 (31)
225 PF06925 MGDG_synth: Monogalac 30.8 98 0.0021 30.6 5.6 40 155-194 88-133 (169)
226 PRK13453 F0F1 ATP synthase sub 30.8 2.5E+02 0.0054 28.1 8.5 50 781-840 73-122 (173)
227 PF00430 ATP-synt_B: ATP synth 30.7 1.7E+02 0.0038 27.3 7.1 72 770-841 43-115 (132)
228 cd05017 SIS_PGI_PMI_1 The memb 30.7 50 0.0011 30.6 3.3 53 155-208 42-105 (119)
229 cd06273 PBP1_GntR_like_1 This 30.5 71 0.0015 33.4 4.9 58 156-217 55-112 (268)
230 cd06314 PBP1_tmGBP Periplasmic 30.4 1.6E+02 0.0035 30.9 7.6 60 155-219 54-116 (271)
231 cd06270 PBP1_GalS_like Ligand 30.4 55 0.0012 34.3 4.0 59 155-217 54-112 (268)
232 PRK06569 F0F1 ATP synthase sub 30.3 3.8E+02 0.0082 26.5 9.3 53 777-835 68-120 (155)
233 PTZ00394 glucosamine-fructose- 30.3 79 0.0017 38.9 5.7 99 157-261 402-515 (670)
234 KOG1970|consensus 30.3 5.1E+02 0.011 31.0 11.6 43 61-105 107-151 (634)
235 CHL00019 atpF ATP synthase CF0 29.7 2.6E+02 0.0056 28.2 8.5 25 815-839 103-127 (184)
236 PRK07649 para-aminobenzoate/an 29.5 1.5E+02 0.0032 30.3 6.8 26 66-91 2-27 (195)
237 PRK08476 F0F1 ATP synthase sub 29.2 3E+02 0.0065 26.5 8.5 9 786-794 67-75 (141)
238 PRK08506 replicative DNA helic 29.1 2.5E+02 0.0054 33.0 9.3 84 24-113 180-271 (472)
239 PRK11009 aphA acid phosphatase 29.0 5.3E+02 0.012 27.2 11.0 38 52-89 119-158 (237)
240 PRK07004 replicative DNA helic 28.8 4.2E+02 0.009 31.0 11.1 151 25-193 202-378 (460)
241 KOG1664|consensus 28.8 2E+02 0.0043 29.5 7.1 55 782-842 9-63 (220)
242 TIGR00566 trpG_papA glutamine 28.6 1.4E+02 0.0029 30.3 6.3 30 156-186 43-79 (188)
243 TIGR03600 phage_DnaB phage rep 28.5 4.3E+02 0.0094 30.3 11.2 74 24-102 182-261 (421)
244 TIGR01461 greB transcription e 28.5 2.1E+02 0.0045 28.3 7.3 68 762-836 3-70 (156)
245 TIGR02637 RhaS rhamnose ABC tr 28.2 1.6E+02 0.0034 31.7 7.2 34 155-189 55-90 (302)
246 cd06283 PBP1_RegR_EndR_KdgR_li 28.2 74 0.0016 33.1 4.5 58 155-216 54-111 (267)
247 TIGR01144 ATP_synt_b ATP synth 28.1 3.1E+02 0.0067 26.3 8.5 62 780-841 38-100 (147)
248 PF07442 Ponericin: Ponericin; 28.0 50 0.0011 22.3 1.9 17 251-267 6-24 (29)
249 cd06325 PBP1_ABC_uncharacteriz 28.0 2E+02 0.0044 30.1 7.9 59 157-215 185-248 (281)
250 PF04026 SpoVG: SpoVG; InterP 28.0 2.5E+02 0.0053 24.8 6.8 74 698-784 5-84 (84)
251 cd06279 PBP1_LacI_like_3 Ligan 27.9 98 0.0021 32.9 5.4 57 155-216 55-111 (283)
252 cd06274 PBP1_FruR Ligand bindi 27.7 1E+02 0.0022 32.1 5.5 59 155-217 54-112 (264)
253 TIGR00315 cdhB CO dehydrogenas 27.6 6E+02 0.013 25.3 10.3 56 29-95 5-63 (162)
254 TIGR02919 accessory Sec system 27.4 3.7E+02 0.008 31.3 10.2 39 157-195 348-387 (438)
255 KOG0944|consensus 27.4 50 0.0011 39.5 3.1 29 233-261 645-673 (763)
256 PRK05595 replicative DNA helic 27.2 6.3E+02 0.014 29.3 12.3 83 24-111 189-279 (444)
257 COG1879 RbsB ABC-type sugar tr 27.1 1.3E+02 0.0027 32.9 6.2 140 155-341 90-233 (322)
258 cd06300 PBP1_ABC_sugar_binding 27.1 97 0.0021 32.5 5.2 43 156-199 60-104 (272)
259 TIGR03088 stp2 sugar transfera 27.0 4E+02 0.0088 29.4 10.4 37 157-194 273-310 (374)
260 cd06305 PBP1_methylthioribose_ 26.8 86 0.0019 32.9 4.7 41 156-197 55-97 (273)
261 PTZ00372 endonuclease 4-like p 26.8 1.5E+02 0.0033 34.0 6.8 73 712-785 156-229 (413)
262 cd06320 PBP1_allose_binding Pe 26.7 2.1E+02 0.0046 30.0 7.7 59 156-218 57-117 (275)
263 PF03449 GreA_GreB_N: Transcri 26.7 4.1E+02 0.0088 22.7 7.9 67 764-837 6-72 (74)
264 PRK07765 para-aminobenzoate sy 26.6 1.9E+02 0.0042 29.9 7.1 32 156-187 46-84 (214)
265 PRK06568 F0F1 ATP synthase sub 26.5 3.7E+02 0.008 26.5 8.5 71 769-839 36-107 (154)
266 PRK14089 ipid-A-disaccharide s 26.3 81 0.0017 35.4 4.5 32 155-186 75-109 (347)
267 PF10740 DUF2529: Protein of u 26.2 2.6E+02 0.0057 28.0 7.4 39 156-194 81-124 (172)
268 PRK08674 bifunctional phosphog 26.1 75 0.0016 35.4 4.2 61 156-217 78-149 (337)
269 PRK00025 lpxB lipid-A-disaccha 25.8 2E+02 0.0044 32.0 7.7 30 156-185 85-115 (380)
270 PRK05412 putative nucleotide-b 25.7 65 0.0014 31.8 3.1 33 728-760 99-131 (161)
271 TIGR02609 doc_partner putative 25.5 1.7E+02 0.0036 25.0 5.2 39 752-790 34-72 (74)
272 PRK12446 undecaprenyldiphospho 25.4 2.4E+02 0.0053 31.5 8.2 31 156-186 91-121 (352)
273 cd06289 PBP1_MalI_like Ligand- 25.4 1.1E+02 0.0024 31.8 5.2 57 156-216 55-112 (268)
274 PRK01021 lpxB lipid-A-disaccha 25.2 1.5E+02 0.0032 35.9 6.5 46 136-186 295-343 (608)
275 cd06318 PBP1_ABC_sugar_binding 25.1 1.2E+02 0.0027 31.8 5.6 45 155-200 54-102 (282)
276 PF07946 DUF1682: Protein of u 24.7 2.2E+02 0.0047 31.6 7.5 51 768-818 263-313 (321)
277 PRK13454 F0F1 ATP synthase sub 24.6 3.7E+02 0.008 27.1 8.5 81 761-841 53-136 (181)
278 TIGR01670 YrbI-phosphatas 3-de 24.6 1.6E+02 0.0035 28.6 5.8 60 577-646 4-64 (154)
279 cd06292 PBP1_LacI_like_10 Liga 24.6 1.2E+02 0.0026 31.7 5.4 60 155-218 54-119 (273)
280 CHL00118 atpG ATP synthase CF0 24.6 3.3E+02 0.0072 26.6 8.0 71 771-841 67-138 (156)
281 PRK03669 mannosyl-3-phosphogly 24.4 1.1E+02 0.0024 32.7 5.0 54 573-645 6-59 (271)
282 TIGR01470 cysG_Nterm siroheme 24.4 1.3E+02 0.0028 31.1 5.2 41 157-201 70-112 (205)
283 TIGR02634 xylF D-xylose ABC tr 24.3 95 0.0021 33.6 4.5 59 155-217 53-114 (302)
284 CHL00101 trpG anthranilate syn 24.2 2.2E+02 0.0048 28.8 6.9 32 156-187 43-80 (190)
285 TIGR00215 lpxB lipid-A-disacch 24.1 2E+02 0.0043 32.6 7.3 30 156-185 89-119 (385)
286 PRK14474 F0F1 ATP synthase sub 24.0 3.4E+02 0.0075 28.9 8.5 61 780-840 48-109 (250)
287 COG1638 DctP TRAP-type C4-dica 23.4 4.2E+02 0.0092 29.5 9.4 94 729-829 216-314 (332)
288 TIGR03321 alt_F1F0_F0_B altern 23.3 3.6E+02 0.0077 28.6 8.5 25 815-839 84-108 (246)
289 PRK13566 anthranilate synthase 23.0 1.8E+02 0.0039 36.1 6.9 76 62-187 525-606 (720)
290 PRK09174 F0F1 ATP synthase sub 23.0 6.3E+02 0.014 26.1 9.9 75 767-841 83-158 (204)
291 KOG4841|consensus 23.0 37 0.00081 29.6 0.8 29 235-263 65-93 (95)
292 cd06267 PBP1_LacI_sugar_bindin 22.8 1.4E+02 0.003 30.7 5.3 57 156-216 55-111 (264)
293 PRK09173 F0F1 ATP synthase sub 22.8 4.2E+02 0.0092 25.9 8.4 21 780-800 45-65 (159)
294 cd06306 PBP1_TorT-like TorT-li 22.7 1.2E+02 0.0025 32.1 4.7 62 155-219 56-118 (268)
295 PRK00994 F420-dependent methyl 22.6 2.1E+02 0.0046 30.2 6.1 34 156-189 60-97 (277)
296 PF00244 14-3-3: 14-3-3 protei 22.5 1.8E+02 0.0039 30.7 6.0 74 761-834 31-105 (236)
297 TIGR02302 aProt_lowcomp conser 22.4 4E+02 0.0086 33.7 9.6 67 764-835 474-548 (851)
298 COG4517 Uncharacterized protei 22.1 1.1E+02 0.0023 27.3 3.3 55 140-204 54-109 (109)
299 PRK14472 F0F1 ATP synthase sub 22.1 4.5E+02 0.0097 26.2 8.5 24 776-799 75-98 (175)
300 PRK06015 keto-hydroxyglutarate 22.0 4.8E+02 0.01 26.9 8.8 86 51-186 17-104 (201)
301 cd06301 PBP1_rhizopine_binding 21.8 1.2E+02 0.0027 31.7 4.7 44 156-200 56-103 (272)
302 TIGR01685 MDP-1 magnesium-depe 21.6 1.7E+02 0.0038 29.3 5.4 68 19-87 11-84 (174)
303 COG1817 Uncharacterized protei 21.6 2.1E+02 0.0046 31.5 6.2 32 156-190 84-115 (346)
304 TIGR01481 ccpA catabolite cont 21.5 3.9E+02 0.0086 28.9 8.8 127 52-218 164-308 (329)
305 PF01380 SIS: SIS domain SIS d 21.3 70 0.0015 29.6 2.4 49 157-205 54-110 (131)
306 PF04461 DUF520: Protein of un 21.1 71 0.0015 31.5 2.4 35 727-761 98-132 (160)
307 PF15605 Toxin_52: Putative to 21.1 3.5E+02 0.0076 24.7 6.4 50 781-835 53-102 (103)
308 PF13801 Metal_resist: Heavy-m 21.1 6E+02 0.013 22.7 11.2 70 762-835 40-112 (125)
309 PRK05748 replicative DNA helic 21.0 6.9E+02 0.015 28.9 11.0 75 24-103 191-271 (448)
310 cd06298 PBP1_CcpA_like Ligand- 21.0 1.6E+02 0.0034 30.7 5.3 58 156-217 55-112 (268)
311 PRK06749 replicative DNA helic 20.9 7.4E+02 0.016 28.7 11.1 162 25-204 175-365 (428)
312 PTZ00393 protein tyrosine phos 20.8 2.4E+02 0.0053 29.9 6.4 99 158-261 93-209 (241)
313 TIGR02417 fruct_sucro_rep D-fr 20.8 1.6E+02 0.0035 32.0 5.5 57 156-216 116-173 (327)
314 PRK01885 greB transcription el 20.8 3.7E+02 0.0081 26.5 7.4 67 763-836 6-72 (157)
315 PRK06552 keto-hydroxyglutarate 20.8 5.6E+02 0.012 26.6 9.1 92 50-188 25-118 (213)
316 PRK08857 para-aminobenzoate sy 20.7 2.8E+02 0.006 28.1 6.8 26 66-91 2-27 (193)
317 cd01538 PBP1_ABC_xylose_bindin 20.6 1.4E+02 0.0031 31.8 4.9 30 156-185 55-86 (288)
318 cd06317 PBP1_ABC_sugar_binding 20.4 1.3E+02 0.0028 31.5 4.5 34 156-190 56-91 (275)
319 PF02684 LpxB: Lipid-A-disacch 20.4 2.1E+02 0.0045 32.6 6.3 27 155-181 81-108 (373)
320 KOG2561|consensus 20.4 1.1E+02 0.0024 35.0 3.9 75 195-269 251-349 (568)
321 PRK06771 hypothetical protein; 20.3 52 0.0011 29.4 1.1 27 219-245 65-91 (93)
322 PRK13453 F0F1 ATP synthase sub 20.3 5.2E+02 0.011 25.8 8.5 24 776-799 75-98 (173)
323 PF00804 Syntaxin: Syntaxin; 20.2 4.4E+02 0.0096 22.9 7.4 61 778-839 7-67 (103)
324 PRK05562 precorrin-2 dehydroge 20.2 2.1E+02 0.0045 30.1 5.7 41 157-201 86-128 (223)
325 COG3707 AmiR Response regulato 20.1 1.8E+02 0.0038 29.8 5.0 105 155-261 49-172 (194)
No 1
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-74 Score=579.92 Aligned_cols=224 Identities=50% Similarity=0.842 Sum_probs=221.2
Q ss_pred CCCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759 2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN 81 (844)
Q Consensus 2 ~~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~ 81 (844)
.+++++||+||+||||++++|||+|+||||+.|||+|||||.||+.+|+.|++|++.++.+||+|||||||.+++++|++
T Consensus 3 ~vsm~~lLeAGvHfGhqtr~wnpkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~ 82 (252)
T COG0052 3 VVSMKQLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKE 82 (252)
T ss_pred cCCHHHHHHcCccccccccccCCcccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759 82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF 161 (844)
Q Consensus 82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi 161 (844)
+|++||++||++||+|||||||+||+++|++|+.++.+.+++ |+.|+|||.+.+.|+.+||+++|||||+|+++||++|
T Consensus 83 ~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~-~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ 161 (252)
T COG0052 83 FAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG-FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLF 161 (252)
T ss_pred HHHHhCCceecCcccCccccCchhHHHHHHHHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEE
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhh
Q psy3759 162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 226 (844)
Q Consensus 162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v 226 (844)
|+||..|++||.||+++||||||+|||||||+.||||||||||+++|+.|++++|++||++|+.-
T Consensus 162 ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~ 226 (252)
T COG0052 162 VIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGG 226 (252)
T ss_pred EeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999863
No 2
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=100.00 E-value=9.1e-68 Score=566.04 Aligned_cols=221 Identities=48% Similarity=0.829 Sum_probs=218.6
Q ss_pred HHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHH
Q psy3759 5 IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAV 84 (844)
Q Consensus 5 ~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~ 84 (844)
+++||++|+||||++++|||+|+|||||.|||+|||||++|+.+|++||+||.+++.+||+||||||+++++.+|+++|+
T Consensus 1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~ 80 (326)
T PRK12311 1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAK 80 (326)
T ss_pred ChhHHhCCeecccCCCCCCCcccCceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeC
Q psy3759 85 RAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID 164 (844)
Q Consensus 85 ~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~ 164 (844)
+||++||++||+|||||||+|++++|++|++++++..++.|+.|+|||.+.+.|+.+||+++|+|+++|+++||+|||+|
T Consensus 81 ~~g~~yV~~RWlgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~d 160 (326)
T PRK12311 81 RSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVID 160 (326)
T ss_pred HhCCeeeCCeecCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759 165 VGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225 (844)
Q Consensus 165 ~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~ 225 (844)
|..|++||+||.++||||||||||||||++|||||||||||++|++|++++|+++|++|+.
T Consensus 161 ~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~ 221 (326)
T PRK12311 161 TNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGIS 221 (326)
T ss_pred CccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 3
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=100.00 E-value=2.7e-67 Score=542.23 Aligned_cols=222 Identities=51% Similarity=0.895 Sum_probs=219.9
Q ss_pred CCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH
Q psy3759 3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE 82 (844)
Q Consensus 3 ~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~ 82 (844)
+++++|+++|+|+||++++|||+|+|||||.|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|+++
T Consensus 2 ~~~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~~ 81 (225)
T TIGR01011 2 VSMKDLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEE 81 (225)
T ss_pred cCHHHHHHcCcccccccCcCCcccccceeeeeCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEE
Q psy3759 83 AVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFI 162 (844)
Q Consensus 83 a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii 162 (844)
|+++|++||++||+||+||||+++++++++|++++++.+++.|+.++|||.+.+.|+++||+++|+|+++|+++||+||+
T Consensus 82 a~~~~~~yv~~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vii 161 (225)
T TIGR01011 82 AERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFV 161 (225)
T ss_pred HHHhCCcccCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcch
Q psy3759 163 IDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224 (844)
Q Consensus 163 ~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~ 224 (844)
+||.+|++|++||.++||||||||||||||++|||||||||||++|++|++++|++||.+|+
T Consensus 162 ~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~ 223 (225)
T TIGR01011 162 IDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK 223 (225)
T ss_pred eCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 4
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=6e-67 Score=548.29 Aligned_cols=223 Identities=53% Similarity=0.946 Sum_probs=220.9
Q ss_pred CCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH
Q psy3759 3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE 82 (844)
Q Consensus 3 ~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~ 82 (844)
+++++|+++|+||||++++|||+|+|||||.|||+|||||++|+.+|++||+||+.++.++|+||||||+++++++|+++
T Consensus 4 ~~i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~~~ 83 (258)
T PRK05299 4 VSMKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIAEE 83 (258)
T ss_pred CCHHHHHhcCcccccccCcCCCccccceecccCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEE
Q psy3759 83 AVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFI 162 (844)
Q Consensus 83 a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii 162 (844)
|++||++||++||+||+||||+++++++++|++++++..++.|+.++|||.+.+.|+++||+++|+|+++|+++||+|||
T Consensus 84 A~~~~~~yv~~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~iii 163 (258)
T PRK05299 84 AERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDALFV 163 (258)
T ss_pred HHHhCCeeeCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759 163 IDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225 (844)
Q Consensus 163 ~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~ 225 (844)
+||..|++|++||.++||||||||||||||++|||||||||||++|++|++++|++||++|+.
T Consensus 164 ~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~ 226 (258)
T PRK05299 164 VDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQ 226 (258)
T ss_pred eCCCccHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 5
>CHL00067 rps2 ribosomal protein S2
Probab=100.00 E-value=5.9e-65 Score=526.48 Aligned_cols=223 Identities=43% Similarity=0.724 Sum_probs=220.3
Q ss_pred CCCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759 2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN 81 (844)
Q Consensus 2 ~~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~ 81 (844)
.+++++|+++|+|+||++++|||+|+|||||.|||+|||||++|+.+|++|+++++++++++|+||||||+++++++|++
T Consensus 7 ~~~i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v~~ 86 (230)
T CHL00067 7 NINLEEMLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLVAS 86 (230)
T ss_pred ccCHHHHHhcCeEeccCcCcCCCchhhhhhcccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759 82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF 161 (844)
Q Consensus 82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi 161 (844)
+|+++|++||++||+||+||||.++++++++|+++++..+.+.|.+++|||.+.+.|++.||+++|+|+++|+++||+||
T Consensus 87 ~a~~~~~~yv~~rWigG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~P~~ii 166 (230)
T CHL00067 87 AAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVI 166 (230)
T ss_pred HHHHhCCcCccCcccCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcch
Q psy3759 162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224 (844)
Q Consensus 162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~ 224 (844)
++||.+|++|++||.++||||||||||||||++|||||||||||++|++|++++|++||.+|+
T Consensus 167 v~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~ 229 (230)
T CHL00067 167 IIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR 229 (230)
T ss_pred EeCCcccHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 6
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=100.00 E-value=1.5e-59 Score=483.00 Aligned_cols=211 Identities=49% Similarity=0.796 Sum_probs=202.7
Q ss_pred HHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcC
Q psy3759 8 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 87 (844)
Q Consensus 8 ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 87 (844)
|+++|+|+||++++|||+|.|||||.|+|+|||||++|+.+|++|+++|++++.++|+||||||++++..+|+++|+++|
T Consensus 1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~~ 80 (211)
T PF00318_consen 1 LLKAGVHLGHKKSRWNPKMKPYIYGKRNGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRTG 80 (211)
T ss_dssp HHHHTTTSCBSSSSSSGGGGGGEEEEETTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHHT
T ss_pred CcccceecCCCcCCCCCCcccceecccCceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCC
Q psy3759 88 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 167 (844)
Q Consensus 88 ~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 167 (844)
++|+++||+||+||||+++++++.+|++++++.. ++||+.+.+.++++|++++|+|+++|+++||+||++||.+
T Consensus 81 ~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~------~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~ 154 (211)
T PF00318_consen 81 SFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFK------LTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNK 154 (211)
T ss_dssp CEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTT------SSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTT
T ss_pred CCccCceecCcccCcHHHHHHHHHHHHHHHHhhh------ccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccc
Confidence 9999999999999999999999999999886554 8999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcch
Q psy3759 168 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224 (844)
Q Consensus 168 ~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~ 224 (844)
|++|++||.++||||||||||||||+.+||||||||||..|++|++++|++||++|+
T Consensus 155 ~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~ 211 (211)
T PF00318_consen 155 NKNAIREANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK 211 (211)
T ss_dssp THHHHHHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999985
No 7
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-57 Score=464.49 Aligned_cols=219 Identities=43% Similarity=0.621 Sum_probs=201.8
Q ss_pred hcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEe--CCEEEEEEEecCCc
Q psy3759 221 LDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETD 298 (844)
Q Consensus 221 ~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~--~~~gviveln~etd 298 (844)
....++|+||++||+|||||||||+|++||+|+|++|||++|+++|.||++|+|+||+|.+|++ ++.|||||+|||||
T Consensus 4 ita~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETD 83 (296)
T COG0264 4 ITAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETD 83 (296)
T ss_pred ccHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEecccc
Confidence 4567899999999999999999999999999999999999999999999999999999999996 66999999999999
Q ss_pred hhccchHHHHHHHHHHHHHHhcCCCChhhhccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCC-ceeeeccC-C
Q psy3759 299 FVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN-NLISYLHD-N 376 (844)
Q Consensus 299 fvA~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~-~i~~Y~H~-~ 376 (844)
|||||+.|++|+++|+.++++..|.+++++...++.+ ++||++++.+.++++||||++|||.+++.+. .+++|+|+ |
T Consensus 84 FVAkN~~F~~l~~~ia~~~l~~~~~~ve~l~~~~~~~-~~tv~e~~~~~~AkIGENi~lRR~~~~~~~~~~v~~Y~H~~g 162 (296)
T COG0264 84 FVAKNAEFQELANKIAKAALEKKPADVEELKAAFEPG-GKTVEEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNG 162 (296)
T ss_pred ceeCChhHHHHHHHHHHHHHHhCcccHHHHHhhhccc-CccHHHHHHHHHHHhccceeEEEEEEeecCcccEEEEEeCCC
Confidence 9999999999999999999999999999999888865 6799999999999999999999999999877 59999999 8
Q ss_pred ceEEEEEecC--CchhHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHHHhhhhhhhcCCCCcccch
Q psy3759 377 KIGVIVEYNG--DNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSS 446 (844)
Q Consensus 377 ~~g~lv~~~~--~~~~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~~~~~~~l~~g~~~~id~~ 446 (844)
||||||.+++ ..+++++++|||||||+|+|+++++||++++++||+++..++. ..|+|..+-++
T Consensus 163 riGVlv~~~~~~~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~~------~~gKP~~i~eK 228 (296)
T COG0264 163 RIGVLVALKGGAADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQLK------AEGKPENIVEK 228 (296)
T ss_pred cEEEEEEEeccchHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHHH------hcCChHHHHHH
Confidence 9999999998 5668999999999999999999999999999999998777542 23677654433
No 8
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=100.00 E-value=6.4e-57 Score=457.48 Aligned_cols=193 Identities=50% Similarity=0.818 Sum_probs=186.9
Q ss_pred HHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcC
Q psy3759 8 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 87 (844)
Q Consensus 8 ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 87 (844)
|+++|+|+||++++|||+|+|||||.|||+|||||++|+.+|++|++++++++.++|+||||||+++++++|+++|+++|
T Consensus 1 ll~ag~h~G~~~~~wnp~m~~yiyg~r~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~ 80 (193)
T cd01425 1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG 80 (193)
T ss_pred CCccceEeCCCcCCCCccchhheecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCC
Q psy3759 88 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 167 (844)
Q Consensus 88 ~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 167 (844)
++|+++||+||+||||.++++++.++++++. .|++++|+|+++|.++||+||++||..
T Consensus 81 ~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~----------------------~~~~k~~~g~~~~~~~Pdlviv~~~~~ 138 (193)
T cd01425 81 SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEK----------------------EKLEKNLGGIKDMFRLPDLVIVLDPRK 138 (193)
T ss_pred CeeecCeecCCcCCCHHHHHHHHHHHHHHHH----------------------HHHHHhcccccccccCCCEEEEeCCcc
Confidence 9999999999999999999999999877642 678999999999999999999999999
Q ss_pred cchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhc
Q psy3759 168 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 222 (844)
Q Consensus 168 ~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~ 222 (844)
|++|++||.++||||||+|||||||++|||||||||||++|++|++++|++|+++
T Consensus 139 ~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~ 193 (193)
T cd01425 139 EHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALILWLLARAILE 193 (193)
T ss_pred chHHHHHHHHcCCCEEEEecCCCCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999863
No 9
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-56 Score=429.04 Aligned_cols=184 Identities=47% Similarity=0.738 Sum_probs=181.7
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy3759 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 740 (844)
Q Consensus 661 ~~~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kA 740 (844)
.++++++++++|++++++|+++|+++||||+||++||+|.|+|||.++||+|+|+||+|++|+|.|+|||++++++|++|
T Consensus 4 ~~~i~~~~e~kM~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~Ieka 83 (187)
T COG0233 4 INEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEKA 83 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHH
Q psy3759 741 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 820 (844)
Q Consensus 741 i~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 820 (844)
|+.|||||||.+||+.|||++|+||+|+|++|+|.+|+++|++|++||||||++++++||+.|++.||||+.++++++||
T Consensus 84 I~~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQ 163 (187)
T COG0233 84 ILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQ 163 (187)
T ss_pred HHHcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy3759 821 KLTDKFILEINQLLINKEKEILTL 844 (844)
Q Consensus 821 ~l~~~~~~~id~~~~~kekel~~~ 844 (844)
++||+|+++||++++.||||||+|
T Consensus 164 KlTd~yi~~iD~~~~~KEkEim~v 187 (187)
T COG0233 164 KLTDEYIKKIDELLKDKEKEIMEV 187 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 10
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=100.00 E-value=3.7e-55 Score=436.79 Aligned_cols=174 Identities=24% Similarity=0.355 Sum_probs=166.1
Q ss_pred CCCHHHHHhcCcccccccCCCCCCCcCcccccc-CCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHH
Q psy3759 2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA 80 (844)
Q Consensus 2 ~~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r-~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~ 80 (844)
.+++++|++||+||||+ .|||+|+|||||.| ||+|||||++|+.+|++|++++.+++ +|+||||||+++++.+|+
T Consensus 3 ~~~i~~ll~agvH~Gh~--~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~--~~~ILfVgtk~~~~~~V~ 78 (196)
T TIGR01012 3 LVPVDKYLAAGVHIGTQ--NKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE--PEDILVVSARIYGQKPVL 78 (196)
T ss_pred cccHHHHHhCCeecCCC--cCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh--CCeEEEEecCHHHHHHHH
Confidence 36899999999999998 59999999999999 79999999999999999999999997 999999999999999999
Q ss_pred HHHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEE
Q psy3759 81 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI 160 (844)
Q Consensus 81 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~v 160 (844)
++|++||++|+++||+||+||||.+- .| ++||+|
T Consensus 79 ~~A~~~g~~~v~~RWlgGtLTN~~~~-----------------~~-----------------------------~~Pdll 112 (196)
T TIGR01012 79 KFAKVTGARAIAGRFTPGTFTNPMQK-----------------AF-----------------------------REPEVV 112 (196)
T ss_pred HHHHHhCCceECCeeCCCCCCCcccc-----------------cc-----------------------------CCCCEE
Confidence 99999999999999999999999730 01 489999
Q ss_pred EEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759 161 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225 (844)
Q Consensus 161 ii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~ 225 (844)
|++||..|++||+||.++||||||||||||||++|||||||||||++|++|++++|+++|++|+.
T Consensus 113 iv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~Si~li~~lla~ail~~~g 177 (196)
T TIGR01012 113 VVTDPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHSLALIYWLLAREILRMRG 177 (196)
T ss_pred EEECCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999985
No 11
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=2.2e-54 Score=433.76 Aligned_cols=173 Identities=26% Similarity=0.412 Sum_probs=164.5
Q ss_pred CCHHHHHhcCcccccccCCCCCCCcCcccccc-CCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759 3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN 81 (844)
Q Consensus 3 ~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r-~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~ 81 (844)
+++++|+++|+||||++ |||+|+|||||.| ||+|||||++|+.+|++|+++|..+ ++|+||||||+++++.+|++
T Consensus 10 v~i~~ll~ag~H~Gh~~--~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ILfVgTk~~~~~~v~k 85 (204)
T PRK04020 10 VPLEEYLAAGVHIGTQQ--KTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY--EPEKILVVSSRQYGQKPVQK 85 (204)
T ss_pred eeHHHHHhCCeEcCCCc--CCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHH
Confidence 68999999999999995 7999999999999 6999999999999999999999997 69999999999999999999
Q ss_pred HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759 82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF 161 (844)
Q Consensus 82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi 161 (844)
+|+++|++|+++||+||+||||+.- ++ .+||+||
T Consensus 86 ~A~~~g~~~v~~RWlgG~LTN~~~~--------------------------------------~~--------~~Pdlii 119 (204)
T PRK04020 86 FAEVVGAKAITGRFIPGTLTNPSLK--------------------------------------GY--------IEPDVVV 119 (204)
T ss_pred HHHHhCCeeecCccCCCcCcCcchh--------------------------------------cc--------CCCCEEE
Confidence 9999999999999999999999820 00 2899999
Q ss_pred EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759 162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225 (844)
Q Consensus 162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~ 225 (844)
++||..|++||+||.++||||||||||||||++|||||||||||++|++|++++|+++|++|+.
T Consensus 120 v~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~SI~li~~ll~~aIl~~kg 183 (204)
T PRK04020 120 VTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALVYWLLAREILRERG 183 (204)
T ss_pred EECCcccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999984
No 12
>PRK09377 tsf elongation factor Ts; Provisional
Probab=100.00 E-value=2.8e-53 Score=448.29 Aligned_cols=205 Identities=43% Similarity=0.624 Sum_probs=194.1
Q ss_pred cchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEeCCEEEEEEEecCCchhc
Q psy3759 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 301 (844)
Q Consensus 222 ~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~~~~gviveln~etdfvA 301 (844)
....+|+||++||+|||||||||+++|||+|+|++|||++|.++|+||++|.|+||+|+++++++.|+|||+||||||||
T Consensus 5 s~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~akA~Kk~~R~a~EG~I~~~~~~~~~~~vElncETDFVA 84 (290)
T PRK09377 5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAAKVDGNKGVLVEVNSETDFVA 84 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhhHHHhcCccccceEEEEEeCCCEEEEEEEecCCcccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhhhccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeee-CCceeeeccC-CceE
Q psy3759 302 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKT-NNNLISYLHD-NKIG 379 (844)
Q Consensus 302 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~-g~~i~~Y~H~-~~~g 379 (844)
||+.|++|+++++.++++..|.+++++.+..+ ++.||+|.+.+.++++||||+|+||.+++. |+.+++|+|+ ||+|
T Consensus 85 rne~F~~l~~~i~~~~l~~~~~~~e~ll~~~~--~g~tv~d~i~~~~~~iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkig 162 (290)
T PRK09377 85 KNEDFQALANEVAEAALAAKPADVEALLALKL--DGGTVEEARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIG 162 (290)
T ss_pred CChHHHHHHHHHHHHHHhcCCCCHHHHHhccc--cCCcHHHHHHHHHHHhcCceEEEEEEEEeecCCEEEEEEcCCCcEE
Confidence 99999999999999999999999999877666 357999999999999999999999999974 5679999998 6999
Q ss_pred EEEEecCCchhHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHH
Q psy3759 380 VIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA 428 (844)
Q Consensus 380 ~lv~~~~~~~~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~ 428 (844)
|||.+++.++++|++||||||||+|.|+++++||++++++|++++..++
T Consensus 163 vlV~~~~~~~~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~E~~i~~~~~ 211 (290)
T PRK09377 163 VLVALEGGDEELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQA 211 (290)
T ss_pred EEEEEccCcHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHH
Confidence 9999999888899999999999999999999999999999999887775
No 13
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=100.00 E-value=3.9e-53 Score=447.19 Aligned_cols=205 Identities=38% Similarity=0.556 Sum_probs=191.3
Q ss_pred cchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEeCCEEEEEEEecCCchhc
Q psy3759 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 301 (844)
Q Consensus 222 ~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~~~~gviveln~etdfvA 301 (844)
....+|+||++||+|||||||||++++||+|+|++|||++|.++|+||++|.|+||+|++|++++.|+||||||||||||
T Consensus 4 sa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncETDFVA 83 (290)
T TIGR00116 4 TAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSETDFVA 83 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecCCcccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhhhccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeC-CceeeeccC-CceE
Q psy3759 302 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTN-NNLISYLHD-NKIG 379 (844)
Q Consensus 302 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g-~~i~~Y~H~-~~~g 379 (844)
||+.|++|+++|++++++.++.+++++.+..+. ++.|| |.+.+.++++||||+|+||.++... +.+++|+|+ ||||
T Consensus 84 rne~F~~l~~~ia~~~~~~~~~~~e~l~~~~~~-~~~tv-d~i~~~~a~iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkig 161 (290)
T TIGR00116 84 KNAGFKEFANKLLDELKANKITTLEELQAQELE-NREKV-EYLAALAAKIGENINLRRVAVLEGDSNVIGSYLHAGARIG 161 (290)
T ss_pred CChHHHHHHHHHHHHHHhcCCCCHHHHhhcccc-CCCcH-HHHHHHHHHhccceEEEEEEEEecCCCcEEEEEcCCCcEE
Confidence 999999999999999999999999998876664 45699 9999999999999999999999753 369999996 7999
Q ss_pred EEEEecCC-chhHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHH
Q psy3759 380 VIVEYNGD-NESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA 428 (844)
Q Consensus 380 ~lv~~~~~-~~~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~ 428 (844)
+||.+++. .++++++||||||||+|.|+++++||++++++||+++..++
T Consensus 162 vlv~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~vie~Erei~~~~~ 211 (290)
T TIGR00116 162 VLVALKGKADEELAKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTDQA 211 (290)
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCccCchhhCCHHHHHHHHHHHHHHH
Confidence 99999985 45789999999999999999999999999999999877665
No 14
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=100.00 E-value=3.4e-52 Score=415.35 Aligned_cols=183 Identities=48% Similarity=0.729 Sum_probs=180.3
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHH
Q psy3759 662 SDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAI 741 (844)
Q Consensus 662 ~~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi 741 (844)
++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+++|+|++++|++|+|+|||++++++|++||
T Consensus 3 ~~~~~~~~~~m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI 82 (185)
T PRK00083 3 NEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAI 82 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHH
Q psy3759 742 NEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQK 821 (844)
Q Consensus 742 ~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~ 821 (844)
++||||+||++||++|+||||+||+|+|++++|.||+++|+||++||||||++++++|+++|++.+|||+.++++++||+
T Consensus 83 ~~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQk 162 (185)
T PRK00083 83 RASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQK 162 (185)
T ss_pred HHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcC
Q psy3759 822 LTDKFILEINQLLINKEKEILTL 844 (844)
Q Consensus 822 l~~~~~~~id~~~~~kekel~~~ 844 (844)
+||+|+++||+++++||||||+|
T Consensus 163 ltd~~i~~id~~~~~Kekeim~v 185 (185)
T PRK00083 163 LTDKYIKKIDELLAAKEKEIMEV 185 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986
No 15
>KOG0832|consensus
Probab=100.00 E-value=2.8e-53 Score=417.18 Aligned_cols=197 Identities=35% Similarity=0.624 Sum_probs=178.0
Q ss_pred CCCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759 2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN 81 (844)
Q Consensus 2 ~~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~ 81 (844)
++++++|+.||+||||.++.|||.|+|||||+|+|+|||||++|+.+|++|++|+.+++..||.||||||++.+...|+.
T Consensus 47 ~~~v~~L~~agvHlGh~t~~wn~~m~pyiyG~R~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~ 126 (251)
T KOG0832|consen 47 LISVEELFNAGVHLGHKTGKWNPRMKPYIYGKRLGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVER 126 (251)
T ss_pred hccHHHHHhccccccccccccCcccchhhcccccCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759 82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF 161 (844)
Q Consensus 82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi 161 (844)
+|++++++|++.+|+||+||||.++...+.+ .|..++++- .|. .+.-||+||
T Consensus 127 aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~-----------~~~~~pd~~-------------~f~----~t~~~D~vv 178 (251)
T KOG0832|consen 127 AARRAGGYSHNRKWLGGLLTNARELFGALVR-----------KFLSLPDAL-------------CFL----PTLTPDLVV 178 (251)
T ss_pred HHHHhcCceeeeeeccceeecchhhcccccc-----------cccCCCcce-------------eec----ccCCcceeE
Confidence 9999999999999999999999987555433 122222210 111 123589999
Q ss_pred EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhh
Q psy3759 162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 226 (844)
Q Consensus 162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v 226 (844)
|+||.+++.|++||.+++|||||||||||||+++||||||||||+.|+.|+++++..|+.+|+..
T Consensus 179 vln~~e~~sAilEA~K~~IPTIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~~ 243 (251)
T KOG0832|consen 179 VLNPEENHSAILEAAKMAIPTIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQK 243 (251)
T ss_pred ecCcccccHHHHHHHHhCCCeEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998863
No 16
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=100.00 E-value=1.4e-52 Score=429.35 Aligned_cols=174 Identities=25% Similarity=0.361 Sum_probs=165.0
Q ss_pred CCHHHHHhcCcccccccCCCCCCCcCccccc-cCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759 3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGH-RNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN 81 (844)
Q Consensus 3 ~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~-r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~ 81 (844)
.++++||++|+||||+ +|||+|+|||||. |+|+|||||++|+.+|++|+++|..+ .++++|||||||++++.+|++
T Consensus 13 ~~i~~lL~agvHlG~~--~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i-~~~~~Il~Vstr~~~~~~V~k 89 (249)
T PTZ00254 13 DDIKKMLACKCHIGTK--NLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAI-ENPADVVVVSSRPYGQRAVLK 89 (249)
T ss_pred HHHHHHHhcCceeccC--cCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHH-hCCCcEEEEEcCHHHHHHHHH
Confidence 5789999999999985 7999999999997 59999999999999999999999998 679999999999999999999
Q ss_pred HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759 82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF 161 (844)
Q Consensus 82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi 161 (844)
+|.++|++||++||+||+||||.+- .| ++||+||
T Consensus 90 ~A~~tg~~~i~~Rw~pGtlTN~~~~-----------------~f-----------------------------~~P~llI 123 (249)
T PTZ00254 90 FAQYTGASAIAGRFTPGTFTNQIQK-----------------KF-----------------------------MEPRLLI 123 (249)
T ss_pred HHHHhCCeEECCcccCCCCCCcccc-----------------cc-----------------------------CCCCEEE
Confidence 9999999999999999999999640 11 4899999
Q ss_pred EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759 162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225 (844)
Q Consensus 162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~ 225 (844)
|+||..|++||+||.++||||||||||||+|++|||||||||||++||.|++++|+++|++++.
T Consensus 124 V~Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~~SI~li~~lLar~Vl~~rG 187 (249)
T PTZ00254 124 VTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAREVLRLRG 187 (249)
T ss_pred EeCCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999886
No 17
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=100.00 E-value=4.5e-51 Score=404.13 Aligned_cols=175 Identities=46% Similarity=0.731 Sum_probs=173.2
Q ss_pred HhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCCc
Q psy3759 670 QKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLN 749 (844)
Q Consensus 670 ~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi~~s~l~~~ 749 (844)
++|++++++|+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|.|+|||++++++|++||++||||+|
T Consensus 2 ~~M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lgln 81 (176)
T TIGR00496 2 ERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLN 81 (176)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHH
Q psy3759 750 PTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILE 829 (844)
Q Consensus 750 p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~ 829 (844)
|+.||++||||||+||+|+|++++|.||+.+|+||++||||||++++++|+++|++.+|||+.++++++||++||+|+++
T Consensus 82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~ 161 (176)
T TIGR00496 82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKK 161 (176)
T ss_pred cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcC
Q psy3759 830 INQLLINKEKEILTL 844 (844)
Q Consensus 830 id~~~~~kekel~~~ 844 (844)
+|+++++||||||+|
T Consensus 162 id~~~~~Kekeim~v 176 (176)
T TIGR00496 162 IDEILKDKEKELMEV 176 (176)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 18
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=100.00 E-value=9.9e-50 Score=397.46 Aligned_cols=178 Identities=49% Similarity=0.724 Sum_probs=175.7
Q ss_pred hhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhc
Q psy3759 665 KKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEA 744 (844)
Q Consensus 665 ~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi~~s 744 (844)
+++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|+|+|||++++++|++||++|
T Consensus 2 ~~~~~~~m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s 81 (179)
T cd00520 2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS 81 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHH
Q psy3759 745 NLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTD 824 (844)
Q Consensus 745 ~l~~~p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~ 824 (844)
|||+||++||++|+||||+||+|+|++++|.||+.+|+||++|||+||++++++|++++++.+|||+.++++++||++||
T Consensus 82 ~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd 161 (179)
T cd00520 82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD 161 (179)
T ss_pred CCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy3759 825 KFILEINQLLINKEKEIL 842 (844)
Q Consensus 825 ~~~~~id~~~~~kekel~ 842 (844)
+|++++|++++.||||||
T Consensus 162 ~~i~~id~~~~~Kekeim 179 (179)
T cd00520 162 EYIKKIDELLKSKEKELL 179 (179)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999999997
No 19
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=100.00 E-value=4.2e-44 Score=354.38 Aligned_cols=165 Identities=48% Similarity=0.713 Sum_probs=160.6
Q ss_pred HHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCCcceecCCee
Q psy3759 678 ILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNII 757 (844)
Q Consensus 678 ~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi~~s~l~~~p~~~~~~i 757 (844)
||+++|+++|+||+||++||+|+|++||+.+||+++|+|+++++++|+|+|||++++++|++||++|+||+||+.||++|
T Consensus 1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i 80 (165)
T PF01765_consen 1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI 80 (165)
T ss_dssp HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 758 YVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 837 (844)
Q Consensus 758 ~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 837 (844)
+|+||+||+|+|++++|.||+.+|+||++||++|+++++++|++++++.+|+|+.++++++||++||+|++++|++++.|
T Consensus 81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 160 (165)
T PF01765_consen 81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK 160 (165)
T ss_dssp EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q psy3759 838 EKEIL 842 (844)
Q Consensus 838 ekel~ 842 (844)
|||||
T Consensus 161 ekell 165 (165)
T PF01765_consen 161 EKELL 165 (165)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 99998
No 20
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=100.00 E-value=6.4e-42 Score=343.80 Aligned_cols=147 Identities=46% Similarity=0.631 Sum_probs=140.4
Q ss_pred cchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEe--CCEEEEEEEecCCch
Q psy3759 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDF 299 (844)
Q Consensus 222 ~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~--~~~gviveln~etdf 299 (844)
....+|+||++||+|||||||||++++||+|+|++|||++|.++|.||++|.|+||+|++|+| ++.|+|||+||||||
T Consensus 4 ~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDF 83 (198)
T PRK12332 4 TAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCETDF 83 (198)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEeccCCc
Confidence 456799999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred hccchHHHHHHHHHHHHHHhcCCCChhh----------------------------------------------hccccc
Q psy3759 300 VAKNNEFIKFSKKIAKLITENTPINLDQ----------------------------------------------LNNLKI 333 (844)
Q Consensus 300 vA~n~~f~~la~~ia~~iaa~~p~~~~~----------------------------------------------l~q~~v 333 (844)
||||+.|++|+++|||||||++|.+++. +.|+|+
T Consensus 84 Va~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~~~gKP~~i~ekiv~Grl~K~~~E~~Ll~Q~fv 163 (198)
T PRK12332 84 VARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFI 163 (198)
T ss_pred cccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHHHHHHHhhhhhhcCccc
Confidence 9999999999999999999999987644 578999
Q ss_pred cCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCc
Q psy3759 334 KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNN 368 (844)
Q Consensus 334 ~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~ 368 (844)
.|++.||+|++.+.++++||||+|+||.||++|||
T Consensus 164 ~d~~~TV~e~l~e~~a~iGEnI~V~rF~R~evGeg 198 (198)
T PRK12332 164 KDPSKTVEDLIKEAIAKIGENIVVRRFARFELGEG 198 (198)
T ss_pred CCCCccHHHHHHHHHHHhCCCeEEEEEEEEEcCCC
Confidence 99899999999999999999999999999999985
No 21
>CHL00098 tsf elongation factor Ts
Probab=100.00 E-value=3.8e-41 Score=337.71 Aligned_cols=148 Identities=45% Similarity=0.591 Sum_probs=141.2
Q ss_pred chhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEe--CCEEEEEEEecCCchh
Q psy3759 223 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFV 300 (844)
Q Consensus 223 g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~--~~~gviveln~etdfv 300 (844)
...+|+||++||+||||||+||++++||+|+|++|||++|.++|+||++|.|+||+|++|+| +++|||||+|||||||
T Consensus 2 a~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a~kk~~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfV 81 (200)
T CHL00098 2 AELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIESYIHTGGKLGVLVEINCETDFV 81 (200)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhccccccCeEEEEEecCCCEEEEEEEecCcccc
Confidence 35799999999999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhc-CCCChhh----------------------------------------------hccccc
Q psy3759 301 AKNNEFIKFSKKIAKLITEN-TPINLDQ----------------------------------------------LNNLKI 333 (844)
Q Consensus 301 A~n~~f~~la~~ia~~iaa~-~p~~~~~----------------------------------------------l~q~~v 333 (844)
|||+.|++||++|||||||+ +|.+++. ++|+|+
T Consensus 82 Arn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~~~~gKp~~i~ekiv~Grl~k~~~e~~LLeQ~fv 161 (200)
T CHL00098 82 ARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFI 161 (200)
T ss_pred cccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhHHHHHHHHhhhhcCccc
Confidence 99999999999999999999 6876554 789999
Q ss_pred cCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCcee
Q psy3759 334 KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 370 (844)
Q Consensus 334 ~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~i~ 370 (844)
+|+++||++++++.++++|||++|+||.||++|||+.
T Consensus 162 ~D~~~TV~~~l~e~~akiGeni~V~rF~R~~vGegie 198 (200)
T CHL00098 162 RDQSITVEELIKQNIAKLGENIQIRRFARFTLGEGEE 198 (200)
T ss_pred CCCCccHHHHHHHHHHhcCCCcEEEEEEEEEecCCcc
Confidence 9999999999999999999999999999999999863
No 22
>KOG4759|consensus
Probab=100.00 E-value=2.9e-39 Score=326.53 Aligned_cols=182 Identities=40% Similarity=0.558 Sum_probs=175.2
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCC-cccHHHHHH
Q psy3759 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKK 739 (844)
Q Consensus 661 ~~~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d-~~~~~~i~k 739 (844)
...+..++.++|+++++.|+++|.++++||++|.+||+|.|+++|.++||+++|+||.++|++|+|+||| |..+++|++
T Consensus 81 ~~~~~~~~~sqmek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn~~d~p~~ikai~k 160 (263)
T KOG4759|consen 81 ENAVEAKANSQMEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILINPFDFPVDIKAILK 160 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEecccCchHHHHHHH
Confidence 3556789999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCCCCcceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHH
Q psy3759 740 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI 819 (844)
Q Consensus 740 Ai~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~i 819 (844)
||++|+||+||++||.+|+|+|||+|.|+|++++|.+++++|++|++||++|++++++++|.++. +++|+++++|+++
T Consensus 161 AI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~--~~~D~vkkae~~l 238 (263)
T KOG4759|consen 161 AIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS--LSEDEVKKAEAEL 238 (263)
T ss_pred HHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876543 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Q psy3759 820 QKLTDKFILEINQLLINKEKEILTL 844 (844)
Q Consensus 820 q~l~~~~~~~id~~~~~kekel~~~ 844 (844)
|+++|.|++++|++++.||||||..
T Consensus 239 ~~l~k~~v~~ld~llkskeKellk~ 263 (263)
T KOG4759|consen 239 QKLAKDAVNKLDDLLKSKEKELLKQ 263 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999863
No 23
>KOG1071|consensus
Probab=100.00 E-value=1.6e-39 Score=334.32 Aligned_cols=187 Identities=33% Similarity=0.471 Sum_probs=164.3
Q ss_pred cchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH----hhhhhhhcccccCCCCceEEEEeCCEEEEEEEecCC
Q psy3759 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK----LGKKILNISNRNAKDGVIAIYISEKVGSLVEINCET 297 (844)
Q Consensus 222 ~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k----g~~~a~kk~~r~~~eG~i~~y~~~~~gviveln~et 297 (844)
+-..+|+||++||++|++|||||+|+|||+..|.+||+|+ |..+|+|+++|+|+||+|++|+|+..+||||+||||
T Consensus 46 ~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k~aqk~g~~~A~K~~sR~t~eGlIgv~~~~~r~vlvElNCET 125 (340)
T KOG1071|consen 46 SKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHKKAQKEGWSKAAKKASRTTKEGLIGVLQEDGRTVLVELNCET 125 (340)
T ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhhHHhhhcccccccceeEEEEeCCeEEEEEeeccc
Confidence 3346899999999999999999999999999999999999 557799999999999999999997777999999999
Q ss_pred chhccchHHHHHHHHHHHHHHh------cCCCChh-------------------hhccccccCCCccHHHHHHHHHHhcC
Q psy3759 298 DFVAKNNEFIKFSKKIAKLITE------NTPINLD-------------------QLNNLKIKNNLLTVDEKCKELISRIG 352 (844)
Q Consensus 298 dfvA~n~~f~~la~~ia~~iaa------~~p~~~~-------------------~l~q~~v~~~~~tv~~~l~~~~~~~g 352 (844)
||||||+.||.|+.+||+.+++ .+|..++ .+.+.+..+++.|++|.+...++++|
T Consensus 126 DFVARn~~Fq~Lv~~iA~~~l~~~~~~~~~~s~~s~e~~l~~~~~g~kl~~~~~~l~~~~d~~gkvsl~d~l~~~i~~~G 205 (340)
T KOG1071|consen 126 DFVARNDIFQDLVDQIALSVLAHCQTLKTKHSSYSKEKELEMDGRGFKLSESLSLLPNLPDVEGKVSLKDQLALAIGKLG 205 (340)
T ss_pred chhhccchHHHHHHHHHHHHHHhhhhcccChhhhhhhhhccccchHHHhhHHHhhccCCCCcccceeHHHHHHHHHHHhc
Confidence 9999999999999999998877 2333222 15566777777799999999999999
Q ss_pred CCeEEEEEEEeeeCCc--eeeeccC------------CceEEEEEecCCch------hHHHHHHhhhcccCCcccC
Q psy3759 353 ENIKIRRFKLFKTNNN--LISYLHD------------NKIGVIVEYNGDNE------SAVKDVAMHIAAMKPIALS 408 (844)
Q Consensus 353 eni~l~rf~~~~~g~~--i~~Y~H~------------~~~g~lv~~~~~~~------~~~~~iamhi~a~~p~~~~ 408 (844)
||++++|+.+|..+++ +++|.|+ |++|.||+++...+ .+++.||.||++|+|..+.
T Consensus 206 ENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~~~~~~~~~i~q~ivgm~p~s~~ 281 (340)
T KOG1071|consen 206 ENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLTSLEDVAKQICQHIVGMSPESVG 281 (340)
T ss_pred cceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhhhHHHHHHHHHHHhhccChhhhc
Confidence 9999999999998665 8999995 37899998876543 4789999999999999876
No 24
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.7e-38 Score=314.26 Aligned_cols=233 Identities=50% Similarity=0.796 Sum_probs=223.0
Q ss_pred hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHH
Q psy3759 421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 500 (844)
Q Consensus 421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (844)
++|+++|+ +|+.+..+.++.+|++.+.+++++|+++.+.|+++.||.|||+.++++.....++++..+|+++++++.+
T Consensus 5 ~~rillkL--sGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvm 82 (238)
T COG0528 5 YMRILLKL--SGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVM 82 (238)
T ss_pred eEEEEEEe--ecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHH
Confidence 46788898 8888877677889999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy3759 501 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 580 (844)
Q Consensus 501 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTD 580 (844)
++.+|.+.|...|++++.+|+..++++..+++.+...+.++.|.|+|++|+.|+|++|+|++|+++|..++||.|+..|+
T Consensus 83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn 162 (238)
T COG0528 83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATN 162 (238)
T ss_pred HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEecc
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999995
Q ss_pred -ccccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759 581 -VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 581 -VdGVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 655 (844)
|||||++||+.+|+|++++++++.|+.+.+..++|++|+.+++++++|++++|+.+++++.+++.|+..||.|.+
T Consensus 163 ~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~ 238 (238)
T COG0528 163 KVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238)
T ss_pred CCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999863
No 25
>PRK14556 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.9e-36 Score=314.20 Aligned_cols=233 Identities=45% Similarity=0.681 Sum_probs=218.3
Q ss_pred hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc-cCCCcchHHHHHHHHHH
Q psy3759 421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-QNIDRSTADYMGMLATI 499 (844)
Q Consensus 421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 499 (844)
++|+++|+ +|+++..+++..+|++.+.+++++|+++.+.|+++.||+|||+.+++..... .++++..+|+++|+++.
T Consensus 15 ~~rvllKl--sGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~ 92 (249)
T PRK14556 15 LKRILLKL--SGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATM 92 (249)
T ss_pred hCEEEEEE--ehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHH
Confidence 57889998 8888876666789999999999999999999999999999999999855553 46899999999999999
Q ss_pred HHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEee
Q psy3759 500 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT 579 (844)
Q Consensus 500 ~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilT 579 (844)
+|+.+|.++|...|++++.+++.....++++++.+.+.+.++.|.|||++|+.|+|++|+|++|+++|..++||+|+++|
T Consensus 93 iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~T 172 (249)
T PRK14556 93 INALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKAT 172 (249)
T ss_pred HHHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759 580 KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 580 DVdGVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 655 (844)
|||||||+||+.+|+|++++++++.+..+.+..++++.|+++|.++|+|++|+|+.+|++|.+++.|+.+||+|+-
T Consensus 173 dVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 173 TVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred CCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 9999999999999999999999999887777788999999999999999999999999999999999999999963
No 26
>PRK14558 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=8e-34 Score=297.94 Aligned_cols=229 Identities=41% Similarity=0.655 Sum_probs=196.1
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHH
Q psy3759 423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS 502 (844)
Q Consensus 423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (844)
|+++|+ +|+.++..++..++.+.+++++++|+++++.|++++||||||+++++... .++++...+.+++....++.
T Consensus 2 riviKl--Ggs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~--~~~~~~~~d~ig~~~~~ln~ 77 (231)
T PRK14558 2 RVLLKL--SGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVEL--KELSPTRADQIGMLGTVINA 77 (231)
T ss_pred eEEEEe--eHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhc--cCCChHHHHHHHHHHHHHHH
Confidence 567886 56655544456699999999999999999999999999999988665332 24455567777777777777
Q ss_pred HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccc
Q psy3759 503 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 582 (844)
Q Consensus 503 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVd 582 (844)
.++..+|..+|++++.+++........+...+.+..+++.|.|||++|+.|.+..++|++|+++|..++||.|+++||||
T Consensus 78 ~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVd 157 (231)
T PRK14558 78 LYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVD 157 (231)
T ss_pred HHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCC
Confidence 77899999999999887754222112344578889999999999999988889999999999999999999999999999
Q ss_pred ccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759 583 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 583 GVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 655 (844)
||||+||+.+|+|+++++++++|+.+.|..++|+.|+++|.++|+|++|+||.+|+++.+++.|+.+||+|.+
T Consensus 158 Gvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 158 GIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred eeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 9999999999999999999999998888899999999999999999999999999999999999999999976
No 27
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=8.3e-34 Score=298.13 Aligned_cols=230 Identities=52% Similarity=0.834 Sum_probs=199.8
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHH
Q psy3759 423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS 502 (844)
Q Consensus 423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (844)
++|+|+ +|+.+..+.+..++.+.+++++++|+++.+.|+++|||||||++++++.....+++...+++.+++++.++.
T Consensus 2 ~iViK~--GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (231)
T PRK00358 2 RVLLKL--SGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATADYMGMLATVMNA 79 (231)
T ss_pred eEEEEe--ccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Confidence 356776 676665455567899999999999999999999999999999888876532234555678899998888898
Q ss_pred HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccc
Q psy3759 503 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 582 (844)
Q Consensus 503 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVd 582 (844)
.+|+..|..+|+++..+++........++..+.+.++|++|.|||++|+.|++..++|++|+++|.+|+||+|+++||||
T Consensus 80 ~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVd 159 (231)
T PRK00358 80 LALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcC
Confidence 89999999999999866665554444445567788999999999999988888899999999999999999999999999
Q ss_pred ccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 583 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 583 GVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
||||+||+.+|+|++|++++++++.+.|++++|++|+++|.++|++++|+||.+|++|.++++|+..||+|.
T Consensus 160 GVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 160 GVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred ceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 999999999999999999999988777888999999999999999999999999999999999998999984
No 28
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....
Probab=100.00 E-value=2.2e-34 Score=296.68 Aligned_cols=154 Identities=43% Similarity=0.692 Sum_probs=134.4
Q ss_pred CCCCceEEEEeCCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhhhccccccCCCccHHHHHHHHHHhcCC
Q psy3759 274 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGE 353 (844)
Q Consensus 274 ~~eG~i~~y~~~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~v~~~~~tv~~~l~~~~~~~ge 353 (844)
|+||+|++++++..|+|||+||||||||||+.|++|+++||..++...+.+++++.+..+.+ .||+|.+.++++++||
T Consensus 1 a~EG~V~~~v~~~~a~~vElncETDFVArn~~F~~l~~~ia~~~~~~~~~~~~~l~~~~~~~--~tv~d~i~~~i~~igE 78 (221)
T PF00889_consen 1 AAEGLVGIAVSGDKAAMVELNCETDFVARNEEFQNLAKEIADAALENKASDVEELLALPLAS--KTVKDAIAELIAKIGE 78 (221)
T ss_dssp --EEEEEEEEETTEEEEEEEEESSHHHHTSHHHHHHHHHHHHHHHCTTEESHHHHHHSB--S--SHHHHHHHHHHHHH-S
T ss_pred CCceEEEEEEeCCcEEEEEEEccccceecCHHHHHHHHHHHHHHHHhCCCCHHHHHhccccc--ccHHHHHHHHHHHhCC
Confidence 57999999999888999999999999999999999999999999988888999988877765 7999999999999999
Q ss_pred CeEEEEEEEeee-CCceeeeccC-CceEEEEEecCCch---hHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHH
Q psy3759 354 NIKIRRFKLFKT-NNNLISYLHD-NKIGVIVEYNGDNE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA 428 (844)
Q Consensus 354 ni~l~rf~~~~~-g~~i~~Y~H~-~~~g~lv~~~~~~~---~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~ 428 (844)
||+|+||.+++. ++.+++|+|+ ||+|+||.++++++ ++|++||||||||+|.|+++++||++++++|++++..++
T Consensus 79 nI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~~~~~E~~i~~~~~ 158 (221)
T PF00889_consen 79 NIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSAKEFAKDIAMHIAAMNPKYLSEEDVPAEVLEKEKEIAKEQA 158 (221)
T ss_dssp -EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGGHHHHHHHHHHHHHH--SBSSCTGS-CCHHHHHHHHHHHHH
T ss_pred CEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchHHHHHHHHHHHHhhhCccccCcccCCHHHHHHHHHHHHHHh
Confidence 999999999987 3468999999 89999999999887 799999999999999999999999999999999887776
Q ss_pred H
Q psy3759 429 Q 429 (844)
Q Consensus 429 ~ 429 (844)
.
T Consensus 159 ~ 159 (221)
T PF00889_consen 159 K 159 (221)
T ss_dssp H
T ss_pred h
Confidence 3
No 29
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00 E-value=4.4e-33 Score=292.07 Aligned_cols=228 Identities=51% Similarity=0.833 Sum_probs=203.1
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHHH
Q psy3759 424 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 503 (844)
Q Consensus 424 iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (844)
+|+|+ +|+.+. +++..++.+.+++++++|+++.+.|++++||||||.++.++.....++++..+++.++.++.+++.
T Consensus 2 iViKi--GGs~l~-~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (229)
T cd04239 2 IVLKL--SGEALA-GEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATADYIGMLATVMNAL 78 (229)
T ss_pred EEEEE--Ccceec-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCChhhHHHHHHHHHHHHHH
Confidence 46675 555544 444478999999999999999989999999999998877766655556666789999999999999
Q ss_pred HHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecccc
Q psy3759 504 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG 583 (844)
Q Consensus 504 ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVdG 583 (844)
+|+.+|..+|+++..+++.++......++.+.+..+++.|.|||++|+.|.+..++|++|+++|..++||+|+++|||||
T Consensus 79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdG 158 (229)
T cd04239 79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDG 158 (229)
T ss_pred HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCc
Confidence 99999999999999999887766555667888999999999999999989988999999999999999999999999999
Q ss_pred cccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 584 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 584 Vyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
|||+||+.+|++++|++++++++.+.+++++|++|++++.++|++++|+||..|+++.+++.|+..||+|.
T Consensus 159 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 159 VYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred ccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 99999999999999999999998887779999999999999999999999999999999999998999983
No 30
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00 E-value=4.5e-33 Score=292.13 Aligned_cols=230 Identities=54% Similarity=0.866 Sum_probs=201.4
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHH
Q psy3759 423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS 502 (844)
Q Consensus 423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (844)
++|+|+ +|++++..+|..++.+.+++++++|+++...|+++|||||||+++++......+......++++++.+..+.
T Consensus 2 ~iViKl--GGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~~~~~~~d~~g~~~~~~n~ 79 (231)
T cd04254 2 RVLLKL--SGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATADYMGMLATVINA 79 (231)
T ss_pred eEEEEe--CceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcCCCchhhhHHHHHHHHHHH
Confidence 356776 788777666778899999999999999988899999999999875443233334444456788887777788
Q ss_pred HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccc
Q psy3759 503 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 582 (844)
Q Consensus 503 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVd 582 (844)
.++++.|..+|+++..+++.+...+...++.+.+..+++.|.|||++|+.|.+.+++|++|+++|..++||+|+++||||
T Consensus 80 ~ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVd 159 (231)
T cd04254 80 LALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence 88999999999999999998765444567789999999999999999998889999999999999999999999999999
Q ss_pred ccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 583 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 583 GVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
|||++||+.+|+++++++++++++.+.|...+|++++++|.++|++++|+||.+|++|.+++.|+.+||+|+
T Consensus 160 Gvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 160 GVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998887888999999999999999999999999999999999999999984
No 31
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=100.00 E-value=5.3e-33 Score=291.78 Aligned_cols=231 Identities=57% Similarity=0.845 Sum_probs=203.3
Q ss_pred hHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHH
Q psy3759 422 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 501 (844)
Q Consensus 422 ~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (844)
+++|+|+ +|++++.+++..++.+.+++++++|+++...|+++|||||||+++.++.....+.+....++++++.+.++
T Consensus 2 ~~iViKl--GGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~~~d~~g~~~~~l~ 79 (233)
T TIGR02075 2 KRVLLKL--SGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRVTADYMGMLATVIN 79 (233)
T ss_pred CEEEEEe--ChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 4567887 77777665566789999999999999998889999999999987666543333444555789999999999
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec-
Q psy3759 502 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK- 580 (844)
Q Consensus 502 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTD- 580 (844)
+++|+..|..+|+++..+++.++......+..+.+..++++|.|||+.|+.|.+.+++|++|+++|..++||+|+++||
T Consensus 80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~ 159 (233)
T TIGR02075 80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG 159 (233)
T ss_pred HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence 9999999999999999999987663333456788999999999999999888999999999999999999999999999
Q ss_pred ccccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 581 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 581 VdGVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
||||||+||+.+|++++|++++++|+.+.|...+|++++++|.++|++++|+||.+|++|.+++.|+.+||+|+
T Consensus 160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 99999999999999999999999998877777899999999999999999999999999999999999999984
No 32
>PRK14557 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=4.3e-33 Score=292.79 Aligned_cols=237 Identities=39% Similarity=0.637 Sum_probs=206.0
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHH
Q psy3759 420 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI 499 (844)
Q Consensus 420 e~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (844)
.++++|+|+ +|+++..++...++.+.+++++++|+++.+.|++++||||||+.+++......+++...+|.++++++.
T Consensus 3 ~~~riViKl--GG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~~~~~D~ig~~g~~ 80 (247)
T PRK14557 3 PYKRVLIKL--SGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTI 80 (247)
T ss_pred cccEEEEEe--CceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 356788998 888887655567888899999999999999999999999999877643333345677788999999999
Q ss_pred HHHHHHHHHHHHc-CCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEe
Q psy3759 500 INSLALFDILNKS-GIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 578 (844)
Q Consensus 500 ~~~~ll~~~L~~~-gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~Liil 578 (844)
+++.++..+|+.. +..+..++...++....++....+...|+.|.|||++|+.|.+.+|+|++|+++|..++||+|+++
T Consensus 81 lna~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ 160 (247)
T PRK14557 81 INSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVA 160 (247)
T ss_pred HHHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEe
Confidence 9999999998874 676666666666666666666778888999999999999999999999999999999999999999
Q ss_pred -ecccccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEecc
Q psy3759 579 -TKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY 657 (844)
Q Consensus 579 -TDVdGVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~ 657 (844)
||||||||+||+.+|+|++|+++++.|+...+..++++.|+++|.++|++++|+||.+|++|.+++.|+.+||+|.+.+
T Consensus 161 ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 161 KQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 240 (247)
T ss_pred cCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence 5999999999999999999999999887666667788999999999999999999999999999999999999999864
Q ss_pred h
Q psy3759 658 I 658 (844)
Q Consensus 658 ~ 658 (844)
.
T Consensus 241 ~ 241 (247)
T PRK14557 241 S 241 (247)
T ss_pred c
Confidence 3
No 33
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=9.8e-32 Score=283.85 Aligned_cols=225 Identities=18% Similarity=0.222 Sum_probs=189.6
Q ss_pred hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc----hHHhhhccccccCCCcchHHHHHHH
Q psy3759 421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQNIDRSTADYMGML 496 (844)
Q Consensus 421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG----G~~~~~~~~~~~~~~~~~~~~~~~~ 496 (844)
.+++|+|+ |+++++++.+.++...+..++++|+.|+..|++||||+|| |...+++.. .|..+...|++
T Consensus 6 ~~riVvKi---GSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~-----rp~~l~~kQA~ 77 (369)
T COG0263 6 ARRIVVKI---GSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPK-----RPKTLAEKQAA 77 (369)
T ss_pred ceEEEEEE---CcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCC-----CCcchHHHHHH
Confidence 46788994 5566666678899999999999999999999999999888 344444333 35677888889
Q ss_pred HHHHHHHHHHHH---HHHcCCce--eEeehhchhhhhhccch-HHHHHHHhCCCEEEEeCCCCCCCCc--------chHH
Q psy3759 497 ATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGIGNPFFT--------TDTT 562 (844)
Q Consensus 497 ~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~~~~~~~-~~l~~lL~~g~VPVv~G~~G~~~~s--------~D~l 562 (844)
++.+|..+|..| |..+|+.. +.++..++....+..|. ..+..+|+.|.||||+ +|+.++ ||++
T Consensus 78 AAVGQ~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIIN---ENDtva~~EikfGDND~L 154 (369)
T COG0263 78 AAVGQVRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIIN---ENDTVATEEIKFGDNDTL 154 (369)
T ss_pred HHhCHHHHHHHHHHHHHhcCCeeeEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeec---CCCceeeeeeeecCCchH
Confidence 999999999988 88898876 66777777665555553 5788899999999993 233222 9999
Q ss_pred HHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCH--HHHHh----------hccccchHHHHHHHHhCCCCEE
Q psy3759 563 AALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIR 630 (844)
Q Consensus 563 Aa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~ 630 (844)
||++|.+++||.|++||||||+||+||+.+|+|++|++++. .++.. +|||.+|+.|+++|.+.|++++
T Consensus 155 sA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~i 234 (369)
T COG0263 155 SALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVI 234 (369)
T ss_pred HHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEE
Confidence 99999999999999999999999999999999999999864 33433 7999999999999999999999
Q ss_pred EEecCCcchHHHHHcCCcccEEEEec
Q psy3759 631 VFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 631 I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
|++|..|+.+.+++.|+..||+|.|.
T Consensus 235 I~~g~~~~~i~~~~~~~~~GT~F~~~ 260 (369)
T COG0263 235 IASGSKPDVILDALEGEAVGTLFEPQ 260 (369)
T ss_pred EecCCCcchHHHHHhCCCCccEEecC
Confidence 99999999999999999999999976
No 34
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.96 E-value=1.8e-28 Score=263.31 Aligned_cols=231 Identities=16% Similarity=0.127 Sum_probs=180.0
Q ss_pred hhhHHHHHHHhhhhhhhcCCCC-cccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhcccccc-----------CC-
Q psy3759 420 EYSLAVLKAQQLGEALMKGDAY-NINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQ-----------NI- 485 (844)
Q Consensus 420 e~~~iv~k~~~~~~~l~~g~~~-~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~-----------~~- 485 (844)
+++++|+|+ + ++++++++. .++.+.+..++++|+.|++.|+++|||+|| |...+.+..... +.
T Consensus 7 ~~~~iVvKi--G-ss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~ 83 (284)
T cd04256 7 HAKRIVVKL--G-SAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQ 83 (284)
T ss_pred cCCEEEEEe--C-chhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhccccc
Confidence 357889996 4 445544433 799999999999999999999999966666 444444333211 11
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHH---HHHcCCce--eEeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCC---
Q psy3759 486 ---DRSTADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIG--- 553 (844)
Q Consensus 486 ---~~~~~~~~~~~~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~-~~~~~~~~l~~lL~~g~VPVv~G~~G--- 553 (844)
.+......+++++.++..++..| |..+|+++ +.++..++... ........+..+|+.|+|||++|+..
T Consensus 84 ~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~ 163 (284)
T cd04256 84 LKDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSP 163 (284)
T ss_pred ccCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccc
Confidence 24556667888888888888887 88888876 33444444322 22234568888999999999986222
Q ss_pred -----------CCCCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh----------hccc
Q psy3759 554 -----------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLE 612 (844)
Q Consensus 554 -----------~~~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~----------~G~~ 612 (844)
+..+++|++|+++|..++||+|+++|||||||++||+ +|++++|++++..+... +|||
T Consensus 164 ~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM 242 (284)
T cd04256 164 PPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM 242 (284)
T ss_pred cccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence 1225799999999999999999999999999999997 69999999998766532 6899
Q ss_pred cchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 613 IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 613 v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
.+|+.|+..|.++|++++|++|..|++|.+++.|+.+||+|.
T Consensus 243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 999999999999999999999999999999999999999983
No 35
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.96 E-value=3.2e-28 Score=257.93 Aligned_cols=229 Identities=18% Similarity=0.258 Sum_probs=176.1
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHH
Q psy3759 420 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI 499 (844)
Q Consensus 420 e~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (844)
..+|+|+|+ ++ +++++++ .++...+..++++++++.+ ++++||||||| .++++... ++........+++++.
T Consensus 7 ~~~riVIKl--G~-Svit~~~-~~~~~~~~~l~~~i~~l~~-~~~vilVssGa-va~g~~~~--~~~~~~~~~~qa~aai 78 (264)
T PTZ00489 7 SVKRIVVKV--GS-SILVDNQ-EIAAHRIEALCRFIADLQT-KYEVILVTSGA-VAAGYTKK--EMDKSYVPNKQALASM 78 (264)
T ss_pred cCCEEEEEe--cc-ceeeCCC-CcCHHHHHHHHHHHHHHhc-CCeEEEEecCh-HhcChhhc--CCCccccHHHHHHHHh
Confidence 356788995 44 4665543 5788889999999999976 79999999776 55554422 2223334456777777
Q ss_pred HHHHHHHHH---HHHcCCceeE--eehhchhhhhhc-cchHHHHHHHhCCCEEEEeCCCCCCC-----CcchHHHHHHHH
Q psy3759 500 INSLALFDI---LNKSGIISHV--MSAISIEKFLES-YIPLNAIKYLEEGKVVIFAGGIGNPF-----FTTDTTAALRAA 568 (844)
Q Consensus 500 ~~~~ll~~~---L~~~gi~a~~--l~~~~~~~~~~~-~~~~~l~~lL~~g~VPVv~G~~G~~~-----~s~D~lAa~lA~ 568 (844)
+|..++..| |..+|+.+.. ++..++...... ...+.+..+|++|+|||++|..-.+. .+||++|+++|.
T Consensus 79 Gq~~L~~~y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~ 158 (264)
T PTZ00489 79 GQPLLMHMYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAH 158 (264)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHH
Confidence 777777766 8889988743 333343332222 23567889999999999987332222 269999999999
Q ss_pred HcCCcEEEEeecccccccCCCCCCCCcee---ecccCHHHHHh---------hccccchHHHHHHHHhCCCCEEEEecCC
Q psy3759 569 EIKAEIILKATKVDGIYNSDPNKCLSAII---YKKITFDEVIS---------KKLEIMDSTAFSFCRDQKLPIRVFSIIK 636 (844)
Q Consensus 569 ~l~Ad~LiilTDVdGVyt~dP~~~~~a~~---I~~i~~~e~~~---------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~ 636 (844)
.++||+|+++|||||||++||+.+|+|++ +++++.++... +|||.+|+.||..|.+.|++++|++|.+
T Consensus 159 ~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~ 238 (264)
T PTZ00489 159 HFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFH 238 (264)
T ss_pred HhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 99999999999999999999999999988 67777765521 7999999999999999999999999999
Q ss_pred cchHHHHHcCC--cccEEEEec
Q psy3759 637 SGALKRVIEGK--NEGTLVYEI 656 (844)
Q Consensus 637 ~~~i~~~l~Ge--~~GT~I~~~ 656 (844)
|++|.+++.|+ ..||+|.|.
T Consensus 239 ~~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 239 LEKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred chHHHHHHcCCCCCCceEEeec
Confidence 99999999875 379999874
No 36
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=3.1e-28 Score=259.93 Aligned_cols=231 Identities=17% Similarity=0.185 Sum_probs=173.1
Q ss_pred hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccccCCCcchHHHHHHHHHH
Q psy3759 421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRSTADYMGMLATI 499 (844)
Q Consensus 421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (844)
.+++|+|+ +|++++ ++...++.+.+++++++|+++++.|+++|||+|| |...+...... . .+......+++++.
T Consensus 9 ~~~iViK~--Ggs~l~-~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~-~-~~~~~~~~~a~aa~ 83 (266)
T PRK12314 9 AKRIVIKV--GSSTLS-YENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLD-K-RPTSLAEKQALAAV 83 (266)
T ss_pred CCEEEEEe--CCCeee-CCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccc-c-CCCCHHHHHHHHHH
Confidence 45678886 666555 4556789999999999999999999999998555 54444333322 1 12223333444444
Q ss_pred HH---HHHHHHHHHHcCCce--eEeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCC-----CCC--CCcchHHHHHH
Q psy3759 500 IN---SLALFDILNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGI-----GNP--FFTTDTTAALR 566 (844)
Q Consensus 500 ~~---~~ll~~~L~~~gi~a--~~l~~~~~~~~-~~~~~~~~l~~lL~~g~VPVv~G~~-----G~~--~~s~D~lAa~l 566 (844)
++ ..++..+|..+|+++ +.++..++... ......+.+..+++.|+|||+++.. +.. ..++|++|+++
T Consensus 84 Gq~~l~~~~~~~~~~~g~~~~q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~l 163 (266)
T PRK12314 84 GQPELMSLYSKFFAEYGIVVAQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIV 163 (266)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHH
Confidence 43 444555699999987 23444444322 1122356888899999999998511 111 34599999999
Q ss_pred HHHcCCcEEEEeecccccccCCCCCCCCceeecccCH--HHHHh----------hccccchHHHHHHHHhCCCCEEEEec
Q psy3759 567 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSI 634 (844)
Q Consensus 567 A~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g 634 (844)
|.+++||.|+|+|||||||++||+.+|+|++|+.+++ .+..+ +|||++|+.|+..|.++|++++|+||
T Consensus 164 A~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g 243 (266)
T PRK12314 164 AKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANG 243 (266)
T ss_pred HHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcC
Confidence 9999999999999999999999999999999998874 33322 37999999999999999999999999
Q ss_pred CCcchHHHHHcCCcccEEEEec
Q psy3759 635 IKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 635 ~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
+.|++|.+++.|+.+||+|.|.
T Consensus 244 ~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 244 FNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred CCchHHHHHHcCCCCceEEccC
Confidence 9999999999999899999863
No 37
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.96 E-value=3.3e-28 Score=253.70 Aligned_cols=209 Identities=27% Similarity=0.397 Sum_probs=174.5
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc--CCCcchHHHHHHHHHHHH
Q psy3759 424 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIIN 501 (844)
Q Consensus 424 iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 501 (844)
+|+|+ +|+.+ +++. +.+.+++++++|+++.+ |++++||||||++++.+..... +.+....++.++..+.++
T Consensus 2 iViKl--GGs~l-~~~~---~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln 74 (221)
T cd04253 2 IVISL--GGSVL-APEK---DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLN 74 (221)
T ss_pred EEEEe--cccee-CCCC---ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 46675 66644 3332 77889999999998865 7899999999988887655432 234446788899988888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy3759 502 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 581 (844)
Q Consensus 502 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDV 581 (844)
..++...+. .|++++.+ +.+.+.++++.|.|||++|+. +++|+|++|+++|..++||+|+++|||
T Consensus 75 ~~~~~~~l~-~~~~~~~~------------~~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdV 139 (221)
T cd04253 75 ARLLIAALG-DAYPPVPT------------SYEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNV 139 (221)
T ss_pred HHHHHHHHh-cCCCcCCC------------CHHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCC
Confidence 888877776 67765433 345677889999999999975 578999999999999999999999999
Q ss_pred cccccCCCCCCCCceeecccCHHHHHh---h-----cc-ccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEE
Q psy3759 582 DGIYNSDPNKCLSAIIYKKITFDEVIS---K-----KL-EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 652 (844)
Q Consensus 582 dGVyt~dP~~~~~a~~I~~i~~~e~~~---~-----G~-~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~ 652 (844)
||||++||+.+|++++|++++++++.+ . |+ +.+|++|++++.++|++++|+||.+|++|.++|.|+.+||+
T Consensus 140 dGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~ 219 (221)
T cd04253 140 DGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI 219 (221)
T ss_pred CeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeE
Confidence 999999999999999999999988866 1 33 67899999999999999999999999999999999999999
Q ss_pred EE
Q psy3759 653 VY 654 (844)
Q Consensus 653 I~ 654 (844)
|.
T Consensus 220 I~ 221 (221)
T cd04253 220 IE 221 (221)
T ss_pred eC
Confidence 84
No 38
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=3.9e-28 Score=268.28 Aligned_cols=232 Identities=16% Similarity=0.182 Sum_probs=175.5
Q ss_pred hhhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHH
Q psy3759 420 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI 499 (844)
Q Consensus 420 e~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (844)
+.+++|+|+ +++++. +..+.++++.+..++++|++|++.|+++||||||| .+.+...... .........+++++.
T Consensus 4 ~~kriVIKi--Ggs~L~-~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~-~~~~~~~~~qalaav 78 (368)
T PRK13402 4 NWKRIVVKV--GSSLLT-PHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGF-IDRPSVPEKQAMAAA 78 (368)
T ss_pred CCcEEEEEE--chhhcc-CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCC-CCCCCccHHHHHHHh
Confidence 346789996 666555 45567999999999999999999999999999997 2222211110 111123334555555
Q ss_pred HHHHH---HHHHHHHcCCceeEe--ehhchhhhhhcc-chHHHHHHHhCCCEEEEeCCCCCC-----CCcchHHHHHHHH
Q psy3759 500 INSLA---LFDILNKSGIISHVM--SAISIEKFLESY-IPLNAIKYLEEGKVVIFAGGIGNP-----FFTTDTTAALRAA 568 (844)
Q Consensus 500 ~~~~l---l~~~L~~~gi~a~~l--~~~~~~~~~~~~-~~~~l~~lL~~g~VPVv~G~~G~~-----~~s~D~lAa~lA~ 568 (844)
++..+ +...|..+|+++..+ +..++....... -...+..+|+.|+|||++++.... ..+||++|+++|.
T Consensus 79 Gq~~l~~~~~~~f~~~g~~~aqvLlT~~d~~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~ 158 (368)
T PRK13402 79 GQGLLMATWSKLFLSHGFPAAQLLLTHGDLRDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAA 158 (368)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEEEecchhhhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHH
Confidence 55444 445599999998644 444442111111 136888899999999998522111 1248999999999
Q ss_pred HcCCcEEEEeecccccccCCCCCCCCceeecccCH--HHHHh----------hccccchHHHHHHHHhCCCCEEEEecCC
Q psy3759 569 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIK 636 (844)
Q Consensus 569 ~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~ 636 (844)
+++||.|+|+||||||||+||+.+|++++|+++++ +++.. +|||.+|+.|+..|.++|++++|+||..
T Consensus 159 ~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~ 238 (368)
T PRK13402 159 LADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFT 238 (368)
T ss_pred HhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCC
Confidence 99999999999999999999999999999999985 44432 6889999999999999999999999999
Q ss_pred cchHHHHHcCCcccEEEEec
Q psy3759 637 SGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 637 ~~~i~~~l~Ge~~GT~I~~~ 656 (844)
|+.|.+++.|+..||+|.+.
T Consensus 239 ~~~l~~~l~g~~~GT~i~~~ 258 (368)
T PRK13402 239 ADIFNQLLKGQNPGTYFTPE 258 (368)
T ss_pred chHHHHHhcCCCCceEEecC
Confidence 99999999999999999986
No 39
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.95 E-value=1.5e-27 Score=248.88 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=173.9
Q ss_pred HHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc--CCCcchHHHHHHHHHHHHH
Q psy3759 425 VLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIINS 502 (844)
Q Consensus 425 v~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 502 (844)
|+|+ +|+. ++++. +.+.+++++++|+++.+. ++++||||||+.++.+..... +......++.++..+..+.
T Consensus 2 ViKl--GGs~-l~~~~---~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~ 74 (221)
T TIGR02076 2 VISL--GGSV-LSPEI---DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNA 74 (221)
T ss_pred EEEe--chhh-cCCCC---CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHH
Confidence 4554 5554 44442 788999999999998876 899999999988876644332 3345567889999888888
Q ss_pred HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccc
Q psy3759 503 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 582 (844)
Q Consensus 503 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVd 582 (844)
.++...|...+++++.. +.....+.+..|.+||++|+. +++++|++|+++|.+++||+|+++||||
T Consensus 75 ~~l~~ll~~~~~~~~~~------------~~~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVd 140 (221)
T TIGR02076 75 MLLIAALGDDAYPKVPE------------NFEEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVD 140 (221)
T ss_pred HHHHHHHHhcCCCCcCC------------CHHHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence 88888887777775532 234446778999999999974 7899999999999999999999999999
Q ss_pred ccccCCCCCCCCceeecccCHHHHHh--------hc-cccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEE
Q psy3759 583 GIYNSDPNKCLSAIIYKKITFDEVIS--------KK-LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653 (844)
Q Consensus 583 GVyt~dP~~~~~a~~I~~i~~~e~~~--------~G-~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I 653 (844)
|||++||+.+|++++|++++++++.+ .| +|.+|++|++++.+.|++++|+||..|+++.+++.|+..||+|
T Consensus 141 Gvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 220 (221)
T TIGR02076 141 GVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220 (221)
T ss_pred cccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence 99999999999999999999988766 13 5678999999999999999999999999999999999899998
Q ss_pred E
Q psy3759 654 Y 654 (844)
Q Consensus 654 ~ 654 (844)
.
T Consensus 221 ~ 221 (221)
T TIGR02076 221 E 221 (221)
T ss_pred C
Confidence 3
No 40
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.95 E-value=2.6e-27 Score=251.58 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=169.1
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccccCCCcchHHH-HHHHHHHH-
Q psy3759 424 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRSTADY-MGMLATII- 500 (844)
Q Consensus 424 iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 500 (844)
+|+|+ +|+++. +.+..++.+.+.+++++|++++..|+++|||||| |...+........ +..... ..+++.|+
T Consensus 2 iViK~--GGs~i~-~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~~~~--~~~~~~~~~~~~~Gq~ 76 (251)
T cd04242 2 IVVKV--GSSLLT-DEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEKR--PKTLPEKQALAAVGQS 76 (251)
T ss_pred EEEEe--CCCeee-CCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhccCcC--CCchhHHHHHHHHhHH
Confidence 46675 666554 4433468899999999999999999999999987 4443332222211 112222 23333333
Q ss_pred -HHHHHHHHHHHcCCceeE--eehhchhhhhhc-cchHHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHHcC
Q psy3759 501 -NSLALFDILNKSGIISHV--MSAISIEKFLES-YIPLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAEIK 571 (844)
Q Consensus 501 -~~~ll~~~L~~~gi~a~~--l~~~~~~~~~~~-~~~~~l~~lL~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~l~ 571 (844)
...++...|..+|+++.. ++..++...... ...+.+..+++.|+|||+++... ..+.++|++|+++|.+|+
T Consensus 77 ~l~~~~~~~l~~~Gi~~~q~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~ 156 (251)
T cd04242 77 LLMALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVN 156 (251)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcC
Confidence 344566779999999854 333333211111 12467888899999999985211 123569999999999999
Q ss_pred CcEEEEeecccccccCCCCCCCCceeecccC--HHHHHh----------hccccchHHHHHHHHhCCCCEEEEecCCcch
Q psy3759 572 AEIILKATKVDGIYNSDPNKCLSAIIYKKIT--FDEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGA 639 (844)
Q Consensus 572 Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~--~~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~ 639 (844)
||+|+|+|||||||++||+.+|++++|++++ ++++.+ +|+|.+|+.|+..+.++|++++|+||..|++
T Consensus 157 Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~ 236 (251)
T cd04242 157 ADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDV 236 (251)
T ss_pred CCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 9999999999999999999999999999999 777644 5789999999999999999999999999999
Q ss_pred HHHHHcCCcccEEEE
Q psy3759 640 LKRVIEGKNEGTLVY 654 (844)
Q Consensus 640 i~~~l~Ge~~GT~I~ 654 (844)
|.+++.|+..||+|.
T Consensus 237 i~~~l~g~~~GT~i~ 251 (251)
T cd04242 237 LLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHcCCCCCeEeC
Confidence 999999999999984
No 41
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.95 E-value=3e-27 Score=263.67 Aligned_cols=232 Identities=22% Similarity=0.222 Sum_probs=176.4
Q ss_pred hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHH
Q psy3759 421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 500 (844)
Q Consensus 421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (844)
.+++|+|+ +|+++. ++++.++++.+.+++++|+++++.|+++||||||+ ...+.........+......+++++.+
T Consensus 8 ~~~iVIKi--GGs~l~-~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa-i~~g~~~l~l~~~~~~~~~~qa~aavG 83 (372)
T PRK05429 8 ARRIVVKV--GSSLLT-GGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA-VAAGRERLGLPERPKTLAEKQAAAAVG 83 (372)
T ss_pred CCEEEEEe--Chhhcc-CCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH-hhhhHhhcCCCCCCCchHHHHHHHHHh
Confidence 46788996 665554 55678999999999999999999999999999884 222211111011122333344555444
Q ss_pred HHH---HHHHHHHHcCCceeEe--ehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHH
Q psy3759 501 NSL---ALFDILNKSGIISHVM--SAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAE 569 (844)
Q Consensus 501 ~~~---ll~~~L~~~gi~a~~l--~~~~~~~~~~~~~-~~~l~~lL~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~ 569 (844)
+.. .+...|..+|+++..+ +..++.......+ ...+..+++.|+|||+++... ....++|++|++||.+
T Consensus 84 q~~L~~~~~~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~ 163 (372)
T PRK05429 84 QSRLMQAYEELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANL 163 (372)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHH
Confidence 444 4456699999998654 5544432223334 467888899999999985221 1235699999999999
Q ss_pred cCCcEEEEeecccccccCCCCCCCCceeecccCH--HHHHh----------hccccchHHHHHHHHhCCCCEEEEecCCc
Q psy3759 570 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS 637 (844)
Q Consensus 570 l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~ 637 (844)
++||.|+|+|||||||++||+.+|++++|+++++ +++.+ +|+|.+|+.|+..|.++|++++|+||..|
T Consensus 164 l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~ 243 (372)
T PRK05429 164 VEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREP 243 (372)
T ss_pred cCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 9999999999999999999999999999999976 44433 57899999999999999999999999999
Q ss_pred chHHHHHcCCcccEEEEec
Q psy3759 638 GALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 638 ~~i~~~l~Ge~~GT~I~~~ 656 (844)
+++.+++.|+..||+|.+.
T Consensus 244 ~~l~~~l~g~~~GT~i~~~ 262 (372)
T PRK05429 244 DVLLRLLAGEAVGTLFLPQ 262 (372)
T ss_pred cHHHHHhcCCCCCEEEeeC
Confidence 9999999999999999986
No 42
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.95 E-value=4e-27 Score=261.59 Aligned_cols=229 Identities=20% Similarity=0.185 Sum_probs=172.8
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHh-hhccccccCCCcchHHHHHHHHHHHH
Q psy3759 423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNIC-RGISNKIQNIDRSTADYMGMLATIIN 501 (844)
Q Consensus 423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (844)
++|+|+ +|+++. +....++.+.+..++++|+++++.|+++|||||||... +...... -.+..+...+.+++.++
T Consensus 2 riVIKi--Ggs~l~-~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~g~~~lg~~--~~~~~l~~~qa~aa~Gq 76 (363)
T TIGR01027 2 RIVVKV--GSSSLT-GSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEALGLP--ERPKTLAEKQALAAVGQ 76 (363)
T ss_pred eEEEEe--ccceEe-CCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhcCccccCCC--CCccchHHHHHHHHhCh
Confidence 467775 555544 44444899999999999999999999999999997332 2212211 12333444455555555
Q ss_pred HHHHH---HHHHHcCCceeE--eehhchhhhhhccch-HHHHHHHhCCCEEEEeCCC-----CCCCCcchHHHHHHHHHc
Q psy3759 502 SLALF---DILNKSGIISHV--MSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGI-----GNPFFTTDTTAALRAAEI 570 (844)
Q Consensus 502 ~~ll~---~~L~~~gi~a~~--l~~~~~~~~~~~~~~-~~l~~lL~~g~VPVv~G~~-----G~~~~s~D~lAa~lA~~l 570 (844)
..++. ..|..+|+++.. ++..++.......+. ..+..+++.|.|||++.+. +....++|++|+++|.++
T Consensus 77 ~~l~~~~~~~l~~~Gi~~aqillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l 156 (363)
T TIGR01027 77 VRLMQLYEQLFSQYGIKVAQILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILV 156 (363)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHc
Confidence 55444 559999999733 334344332222333 6788889999999997321 112346999999999999
Q ss_pred CCcEEEEeecccccccCCCCCCCCceeecccCHH--HHHh----------hccccchHHHHHHHHhCCCCEEEEecCCcc
Q psy3759 571 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD--EVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG 638 (844)
Q Consensus 571 ~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~--e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~ 638 (844)
+||.|+|+|||||||++||+.+|+|++|++++.. +... +|||.+|+.|+..|.+.|++++|+||..|+
T Consensus 157 ~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~ 236 (363)
T TIGR01027 157 GADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPE 236 (363)
T ss_pred CCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 9999999999999999999999999999999753 2211 678999999999999999999999999999
Q ss_pred hHHHHHcCCcccEEEEec
Q psy3759 639 ALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 639 ~i~~~l~Ge~~GT~I~~~ 656 (844)
+|.+++.|+..||+|.+.
T Consensus 237 ~l~~~l~g~~~GT~i~~~ 254 (363)
T TIGR01027 237 KIADALEGAPVGTLFHAQ 254 (363)
T ss_pred HHHHHhcCCCCcEEEeeC
Confidence 999999999899999985
No 43
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.94 E-value=3.7e-27 Score=251.09 Aligned_cols=222 Identities=18% Similarity=0.200 Sum_probs=173.9
Q ss_pred HHHHHHhhhhhhhcC-CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc---c---CCCcchHHHHHHH
Q psy3759 424 AVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q---NIDRSTADYMGML 496 (844)
Q Consensus 424 iv~k~~~~~~~l~~g-~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---~---~~~~~~~~~~~~~ 496 (844)
+|+|+ +|+.+... .+..++.+.++++++++++++ |+++|||||||.+.+...... . ..++..+...+..
T Consensus 2 iVIKi--GGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~g~~~~~~~~l~~~~~~ 77 (252)
T cd04241 2 IILKL--GGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPDGDGSFSAEGVAETHEA 77 (252)
T ss_pred EEEEE--eceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCcCCCchhhhhHHHHHHH
Confidence 35664 45444332 356789999999999999887 999999999987655433321 1 1233444444443
Q ss_pred HHHHHHHHHHHHHHHcCCceeEeehhchhh----hhhccchHHHHHHHhCCCEEEEeCCCC------CCCCcchHHHHHH
Q psy3759 497 ATIINSLALFDILNKSGIISHVMSAISIEK----FLESYIPLNAIKYLEEGKVVIFAGGIG------NPFFTTDTTAALR 566 (844)
Q Consensus 497 ~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----~~~~~~~~~l~~lL~~g~VPVv~G~~G------~~~~s~D~lAa~l 566 (844)
.. ..+..+.++|..+|+++.++++.++.. ....++.+.+..+++.|+|||++|..+ ..++++|++|+.+
T Consensus 78 ~~-~ln~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~l 156 (252)
T cd04241 78 ML-ELNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVEL 156 (252)
T ss_pred HH-HHHHHHHHHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHH
Confidence 33 445567888999999999998877521 244677899999999999999987321 1246799999999
Q ss_pred HHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh------------hccccchHHHHHHHHhCCCCEEEEec
Q psy3759 567 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS------------KKLEIMDSTAFSFCRDQKLPIRVFSI 634 (844)
Q Consensus 567 A~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~------------~G~~v~~~~Aa~~a~~~gi~v~I~~g 634 (844)
|.+++||+|+++|||||||++|| |++++|++++.+++.+ +|||..|+.++..|.++|++++|++|
T Consensus 157 A~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g 233 (252)
T cd04241 157 AKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNG 233 (252)
T ss_pred HHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeC
Confidence 99999999999999999999999 7899999998744322 58999999999999999999999999
Q ss_pred CCcchHHHHHcCCcccEEE
Q psy3759 635 IKSGALKRVIEGKNEGTLV 653 (844)
Q Consensus 635 ~~~~~i~~~l~Ge~~GT~I 653 (844)
..|+++.+++.|+.+||+|
T Consensus 234 ~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 234 DKPENLYRALLGNFIGTRI 252 (252)
T ss_pred CCHHHHHHHHcCCCCceEC
Confidence 9999999999999899986
No 44
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.94 E-value=1.3e-26 Score=246.30 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=174.6
Q ss_pred chhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc---------cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy3759 445 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---------QNIDRSTADYMGMLATIINSLALFDILNKSGII 515 (844)
Q Consensus 445 ~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~ 515 (844)
.+.+++++++|+.+.+.|+++|||||||.......... ...+....+.....+.+..+.++.++|.++|++
T Consensus 12 ~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 91 (248)
T cd02115 12 EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIK 91 (248)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36789999999999888999999999985444322221 123344555666666677899999999999999
Q ss_pred eeEeehhchhh---------hhhccchHHHHHHHhCCCEEEEeCCCCCC--------CCcchHHHHHHHHHcCCcEEEEe
Q psy3759 516 SHVMSAISIEK---------FLESYIPLNAIKYLEEGKVVIFAGGIGNP--------FFTTDTTAALRAAEIKAEIILKA 578 (844)
Q Consensus 516 a~~l~~~~~~~---------~~~~~~~~~l~~lL~~g~VPVv~G~~G~~--------~~s~D~lAa~lA~~l~Ad~Liil 578 (844)
+..+++.+... ....++.+.+..+++.|.|||++|+.+.+ +.++|++|+.+|.+|+||+|+++
T Consensus 92 a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~ 171 (248)
T cd02115 92 AVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVIL 171 (248)
T ss_pred eEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEE
Confidence 99998876522 24456788999999999999999965432 46699999999999999999999
Q ss_pred ecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEE
Q psy3759 579 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653 (844)
Q Consensus 579 TDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I 653 (844)
|||||||++||+.+|++++|++++++|+.+ .|+|+.|+.++..+.++|++++|+|+..|+.+ +++.++..||+|
T Consensus 172 tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I 248 (248)
T cd02115 172 TDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248 (248)
T ss_pred ecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence 999999999999999999999999987766 78999999999999999999999999999999 999898899986
No 45
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.94 E-value=1.9e-26 Score=243.48 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=159.6
Q ss_pred cchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy3759 444 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI----QNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 518 (844)
Q Consensus 444 d~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 518 (844)
+.+.+++++++|..+.+.|+++|||||| |.....+.... ...+...++.+.......+..+++..|+.+|++++.
T Consensus 13 ~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~ 92 (239)
T cd04261 13 SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAIS 92 (239)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 5678999999999999899999999998 43322222111 112333444433333344666788899999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC------CC---cchHHHHHHHHHcCCcEEEEeec
Q psy3759 519 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FF---TTDTTAALRAAEIKAEIILKATK 580 (844)
Q Consensus 519 l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~------~~---s~D~lAa~lA~~l~Ad~LiilTD 580 (844)
+++.+.... ....+.+.+..++++|.|||++|+.|.+ ++ ++|++|+.+|.+|+||+|+++||
T Consensus 93 l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~td 172 (239)
T cd04261 93 LTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTD 172 (239)
T ss_pred echhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeC
Confidence 998875221 2234568899999999999999975432 12 59999999999999999999999
Q ss_pred ccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 581 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 581 VdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
|||||++||+.+|++++|++++++|+.+ .|.+++|+.|+.+|.++|+|++|.|+++|+ .||+|+
T Consensus 173 V~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~----------~gt~i~ 239 (239)
T cd04261 173 VDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE----------PGTLIT 239 (239)
T ss_pred CCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC----------CCcEeC
Confidence 9999999999999999999999998877 799999999999999999999999999872 699984
No 46
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.94 E-value=1.9e-26 Score=243.48 Aligned_cols=201 Identities=25% Similarity=0.332 Sum_probs=160.8
Q ss_pred cchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccc---c-CCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy3759 444 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI---Q-NIDRSTADYMGMLATIINSLALFDILNKSGIISHV 518 (844)
Q Consensus 444 d~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 518 (844)
+++.+++++++|+.+.+.|+++|||||| |.....+.... . ..+...++.+.++.+..++.+++..|+++|++++.
T Consensus 13 ~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~ 92 (239)
T cd04246 13 DIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAIS 92 (239)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEE
Confidence 5678999999999999899999999996 43333222211 1 11344555544444455777889999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCC---CC---C---cchHHHHHHHHHcCCcEEEEeec
Q psy3759 519 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F---TTDTTAALRAAEIKAEIILKATK 580 (844)
Q Consensus 519 l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~---~~---~---s~D~lAa~lA~~l~Ad~LiilTD 580 (844)
+++.+.... +...+.+.+..++++|.|||++|+.|. +. + ++|++|+.+|.+|+||+|+++||
T Consensus 93 l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~td 172 (239)
T cd04246 93 LTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTD 172 (239)
T ss_pred eccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEEC
Confidence 988774211 223466889999999999999997442 11 2 48999999999999999999999
Q ss_pred ccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 581 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 581 VdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
||||||+||+.+|++++|++++++|+.+ .|++++|+.|+++|.++|+|++|.|+++|+ .||+|+
T Consensus 173 V~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~----------~gt~i~ 239 (239)
T cd04246 173 VDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN----------PGTLIT 239 (239)
T ss_pred CCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC----------CCcEeC
Confidence 9999999999999999999999998877 789999999999999999999999998862 599984
No 47
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=233.33 Aligned_cols=225 Identities=22% Similarity=0.259 Sum_probs=174.1
Q ss_pred HHHHHhhhhhhhcC-CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCC-------CcchHHHHHHH
Q psy3759 425 VLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI-------DRSTADYMGML 496 (844)
Q Consensus 425 v~k~~~~~~~l~~g-~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~-------~~~~~~~~~~~ 496 (844)
++|+ +||.++.. .|..++++.++++|.+|+. ..=.++|||||||++.|...... ++ ++.-. .....
T Consensus 4 IlKl--GGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~-~~~~~~~~~s~~G~-~~~~~ 77 (252)
T COG1608 4 ILKL--GGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEF-GLEGLKNYLSPLGF-SLTHL 77 (252)
T ss_pred EEEe--cceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHh-CccccccccCccch-HHHHH
Confidence 4565 56655543 5678899999999999985 11136889999998887655543 22 11222 22223
Q ss_pred HHHHHHHHHHHHHHHcCCceeEeehhchhhh--hhccc-hHHHHHHHhCCCEEEEeC------CCCCCCCcchHHHHHHH
Q psy3759 497 ATIINSLALFDILNKSGIISHVMSAISIEKF--LESYI-PLNAIKYLEEGKVVIFAG------GIGNPFFTTDTTAALRA 567 (844)
Q Consensus 497 ~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~--~~~~~-~~~l~~lL~~g~VPVv~G------~~G~~~~s~D~lAa~lA 567 (844)
++..-+..+++.|.++|+.++...|.++... ...+. ...+..+++.|+|||++| ..|...+|+|.++.+||
T Consensus 78 am~~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA 157 (252)
T COG1608 78 AMLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLA 157 (252)
T ss_pred HHHHHHHHHHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHH
Confidence 3444566677888999999987666655211 11223 678899999999999999 23455688999999999
Q ss_pred HHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCCCEEEEecCCcchH
Q psy3759 568 AEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGAL 640 (844)
Q Consensus 568 ~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i 640 (844)
..|++|+++|+|||||||+.||...|+++.++++....... +|||..|++++....+++.+++++||.+|++|
T Consensus 158 ~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni 237 (252)
T COG1608 158 KELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENI 237 (252)
T ss_pred HHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHH
Confidence 99999999999999999999999899999999887643332 89999999999888899999999999999999
Q ss_pred HHHHcCCcccEEEEe
Q psy3759 641 KRVIEGKNEGTLVYE 655 (844)
Q Consensus 641 ~~~l~Ge~~GT~I~~ 655 (844)
.++|.|+.+||+|.+
T Consensus 238 ~~~l~G~~vGT~I~~ 252 (252)
T COG1608 238 YRALRGENVGTRIDG 252 (252)
T ss_pred HHHhcCCCCceEecC
Confidence 999999999999863
No 48
>KOG1154|consensus
Probab=99.93 E-value=2.2e-26 Score=228.07 Aligned_cols=232 Identities=19% Similarity=0.179 Sum_probs=175.1
Q ss_pred hhHHHHHHHhhhhhhhcC-CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhcccccc-C-----CCcch
Q psy3759 421 YSLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-N-----IDRST 489 (844)
Q Consensus 421 ~~~iv~k~~~~~~~l~~g-~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~-----~~~~~ 489 (844)
..++|+|+ |++++++ +...+...++..+++++++|+..|++++||+||| ...+.+..... . -++..
T Consensus 9 a~rIVVKL---GSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~ 85 (285)
T KOG1154|consen 9 AYRIVVKL---GSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSE 85 (285)
T ss_pred ceEEEEEe---cceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCccc
Confidence 45788884 5566555 4455888999999999999999999999999996 22222222210 0 12334
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHcCCce--eEeehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCCC-----CCC-
Q psy3759 490 ADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIGN-----PFF- 557 (844)
Q Consensus 490 ~~~~~~~~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~~~~~~-~~~l~~lL~~g~VPVv~G~~G~-----~~~- 557 (844)
+...++++..+++.+|+-| |.++|+.. +.++-.|+...-...+ ...+.++|..|.||||...... ++-
T Consensus 86 l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D 165 (285)
T KOG1154|consen 86 LAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGD 165 (285)
T ss_pred hhhHHHHHHhCcchHHHHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCC
Confidence 6677777888888888877 88998876 4555555533322222 3578899999999999542211 111
Q ss_pred --cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHH-h----------hccccchHHHHHHHHh
Q psy3759 558 --TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFCRD 624 (844)
Q Consensus 558 --s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~-~----------~G~~v~~~~Aa~~a~~ 624 (844)
.||++||.+|..++||.|+++|||||+||.+|.. ..+++|+..+..+-. . +|||-.|+.||..|..
T Consensus 166 ~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~ 244 (285)
T KOG1154|consen 166 SSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALN 244 (285)
T ss_pred CCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhc
Confidence 1999999999999999999999999999977654 457888777654332 1 7999999999999999
Q ss_pred CCCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 625 QKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 625 ~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
.|++++|++|..|++|.+++.|..+||.|+..
T Consensus 245 ~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 245 AGVSVIITNGDAPENITDIVEGKKVGTFFEQL 276 (285)
T ss_pred CCceEEEeCCCChHHHHHHHhhhhhhhhhhhc
Confidence 99999999999999999999999999999754
No 49
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.93 E-value=2.3e-25 Score=236.39 Aligned_cols=212 Identities=21% Similarity=0.289 Sum_probs=164.9
Q ss_pred HHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccc--cccCCCcchHHHHHHHHHHHH
Q psy3759 424 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGMLATIIN 501 (844)
Q Consensus 424 iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 501 (844)
+|+|+ |+++++++. .+.++++|++|+++.. |++++||||||++++.+.. ...+++....+..++.+++++
T Consensus 33 ~ViKi---GGSvitdk~----~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln 104 (262)
T cd04255 33 NVVKI---GGQSIIDRG----AEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQN 104 (262)
T ss_pred EEEEe---ccceecCCc----HHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 46774 444555542 4689999999999876 7899999999988865442 233556667778888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC------------CCCCcchHHHHHHHHH
Q psy3759 502 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------------NPFFTTDTTAALRAAE 569 (844)
Q Consensus 502 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G------------~~~~s~D~lAa~lA~~ 569 (844)
..++...|..+|++++. . .+...+..+|+.|+|||++|+.+ .++.++|++|+++|.+
T Consensus 105 ~lv~~~~l~~~g~~~i~--~---------~~~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~ 173 (262)
T cd04255 105 AEMLATLLAKHGGSKVG--H---------GDLLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEV 173 (262)
T ss_pred HHHHHHHHHHcCCCccc--c---------ccHHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHH
Confidence 77776778888887631 1 22346888999999999999742 4577899999999999
Q ss_pred cCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHhh--ccccchHHHHHHHH--hCCCCEEEEecCCcchHHHHHc
Q psy3759 570 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK--KLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIE 645 (844)
Q Consensus 570 l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~~--G~~v~~~~Aa~~a~--~~gi~v~I~~g~~~~~i~~~l~ 645 (844)
++||.|+++|||||||++||+.+|++++|++++++++.+. +...++-.+...+. +..++++|+||..|+++.+++.
T Consensus 174 l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~ 253 (262)
T cd04255 174 IGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALR 253 (262)
T ss_pred hCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHc
Confidence 9999999999999999999999999999999999877652 22223333333333 3346999999999999999999
Q ss_pred CCcccEEEE
Q psy3759 646 GKNEGTLVY 654 (844)
Q Consensus 646 Ge~~GT~I~ 654 (844)
|+.+||+|.
T Consensus 254 g~~~GT~i~ 262 (262)
T cd04255 254 GEHVGTIIR 262 (262)
T ss_pred CCCCceEeC
Confidence 999999983
No 50
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.93 E-value=1.8e-25 Score=239.55 Aligned_cols=223 Identities=22% Similarity=0.261 Sum_probs=170.0
Q ss_pred HHHHHHhhhhhhhcCC---CCcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccccccCCCcchHHHHHHH
Q psy3759 424 AVLKAQQLGEALMKGD---AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGML 496 (844)
Q Consensus 424 iv~k~~~~~~~l~~g~---~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~ 496 (844)
+++++ +|.++...+ ....+.+.++..+++|+++.+.|++++||||+| +.+++........++.+++.+.+.
T Consensus 2 ivial--gGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~ 79 (308)
T cd04235 2 IVVAL--GGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAM 79 (308)
T ss_pred EEEEe--cHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcch
Confidence 45566 788887544 256788899999999999999999999999997 777765444333455667777777
Q ss_pred HHHHHHHHHHHH----HHHcCCceeEeehhchh-----------------hh----------------------------
Q psy3759 497 ATIINSLALFDI----LNKSGIISHVMSAISIE-----------------KF---------------------------- 527 (844)
Q Consensus 497 ~~~~~~~ll~~~----L~~~gi~a~~l~~~~~~-----------------~~---------------------------- 527 (844)
.+|+.+++|+.+ |..+|++....+..+.. .+
T Consensus 80 ~~G~ig~~~~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv 159 (308)
T cd04235 80 SQGMIGYMLQQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence 777777766555 67777765333322110 00
Q ss_pred ------hhccchHHHHHHHhCCCEEEEeCCCCCCCCc-------------chHHHHHHHHHcCCcEEEEeecccccccCC
Q psy3759 528 ------LESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIYNSD 588 (844)
Q Consensus 528 ------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s-------------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~d 588 (844)
..-++.+.+..+|++|+|||++|+.|+|.++ +|++|+++|..++||+|+++|||||||+++
T Consensus 160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~ 239 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence 1113457788899999999999988887533 499999999999999999999999999976
Q ss_pred CCCCCCceeecccCHHHHHh--------hccccchHHHHH-HHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 589 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFS-FCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 589 P~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa~-~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
| .|++++|++++++++.+ .|+|.+|+.|+. ++.+.+.+++|++ ++++.++|.|+ .||+|.
T Consensus 240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 5 38999999999988765 589999998875 4555567788865 67899999998 799983
No 51
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.93 E-value=5.4e-25 Score=237.45 Aligned_cols=224 Identities=21% Similarity=0.240 Sum_probs=170.3
Q ss_pred HHHHHHHhhhhhhhcCC-CC--cccchhhhhhhhhhhhhhhCCCeEEEEeCchHH----hhhccccccCCCcchHHHHHH
Q psy3759 423 LAVLKAQQLGEALMKGD-AY--NINSSIIKNIISEISEIVSCGIELAIVIGGGNI----CRGISNKIQNIDRSTADYMGM 495 (844)
Q Consensus 423 ~iv~k~~~~~~~l~~g~-~~--~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~----~~~~~~~~~~~~~~~~~~~~~ 495 (844)
|+|+++ +|++++..+ .. .++...++.+|++|++|.+.|+++|||||||.. .++........++.+++.+.+
T Consensus 2 riVikl--GgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A 79 (310)
T TIGR00746 2 RVVVAL--GGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGA 79 (310)
T ss_pred eEEEEE--CHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHH
Confidence 567787 788877432 22 466789999999999999999999999999733 333222222345556888999
Q ss_pred HHHHHHHHHHHHHHH----HcCCce--------eEeehhc--hhhh----------------------------------
Q psy3759 496 LATIINSLALFDILN----KSGIIS--------HVMSAIS--IEKF---------------------------------- 527 (844)
Q Consensus 496 ~~~~~~~~ll~~~L~----~~gi~a--------~~l~~~~--~~~~---------------------------------- 527 (844)
..+++.++++...|. .+|++. +.++..| +...
T Consensus 80 ~~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rr 159 (310)
T TIGR00746 80 MSQGMIGYMLQQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRR 159 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceE
Confidence 999998888888776 777543 2333333 1000
Q ss_pred -------hhccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeecccccccC
Q psy3759 528 -------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYNS 587 (844)
Q Consensus 528 -------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~ 587 (844)
...++.+.+..+|+.|.++|.+|+.|.|. +++|++|+++|.+++||+|+++|||||||++
T Consensus 160 vv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~ 239 (310)
T TIGR00746 160 VVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN 239 (310)
T ss_pred eecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC
Confidence 11245678899999999777766666553 2699999999999999999999999999997
Q ss_pred CCCCCCCceeecccCHHHHHh--------hccccchHHHH-HHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 588 DPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 588 dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
++ +|++++|++++.+++.. .|+|.+|+.|| +++.+.+.+++|++ ++++.++|.|+ .||+|.
T Consensus 240 ~~--~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 240 YG--KPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CC--CCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 53 48899999999888765 48999999888 66666678899986 67899999999 899996
No 52
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=226.51 Aligned_cols=214 Identities=19% Similarity=0.185 Sum_probs=178.0
Q ss_pred CCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhh---cccccc-------CCCcchHHHHHHHHHHHHHHHHHH
Q psy3759 438 GDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRG---ISNKIQ-------NIDRSTADYMGMLATIINSLALFD 507 (844)
Q Consensus 438 g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~ll~~ 507 (844)
|+....+++..++++++|+.|+..|.++|||||||..... ...... -.++.+++...++..|..+..+++
T Consensus 10 GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iva 89 (265)
T COG0548 10 GGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIVA 89 (265)
T ss_pred CceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567778999999999999999999999999944332 222222 238889999999999999999999
Q ss_pred HHHHcCCceeEeehhchhhh------------------hhccchHHHHHHHhCCCEEEEeC----CCCCC-CCcchHHHH
Q psy3759 508 ILNKSGIISHVMSAISIEKF------------------LESYIPLNAIKYLEEGKVVIFAG----GIGNP-FFTTDTTAA 564 (844)
Q Consensus 508 ~L~~~gi~a~~l~~~~~~~~------------------~~~~~~~~l~~lL~~g~VPVv~G----~~G~~-~~s~D~lAa 564 (844)
.|+.+|..++++++.|.+.+ +..+|+..+..++++|+|||+++ ..|.. ++++|++|+
T Consensus 90 ~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~ 169 (265)
T COG0548 90 RLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAG 169 (265)
T ss_pred HHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHH
Confidence 99999999999999884211 55678999999999999999998 22333 477999999
Q ss_pred HHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCC-CEEEEecCC
Q psy3759 565 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIK 636 (844)
Q Consensus 565 ~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~ 636 (844)
.+|.+|+|++|+++|||+|||+++|+ | .+|++++.+++.+ .|||++|+.+|..|.+.|+ +++|+||..
T Consensus 170 ~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~ 245 (265)
T COG0548 170 ALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRV 245 (265)
T ss_pred HHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCC
Confidence 99999999999999999999998875 3 6888888877765 6899999999999999999 599999999
Q ss_pred cchHHHH-HcCCcccEEEEe
Q psy3759 637 SGALKRV-IEGKNEGTLVYE 655 (844)
Q Consensus 637 ~~~i~~~-l~Ge~~GT~I~~ 655 (844)
|+.+... +.+..+||.|.+
T Consensus 246 ~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 246 PHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred cchHHHHHhcCCCcceEecC
Confidence 9997654 567778999863
No 53
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.92 E-value=5e-24 Score=240.73 Aligned_cols=326 Identities=18% Similarity=0.224 Sum_probs=219.6
Q ss_pred cccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccccc------------------cCCCc------------
Q psy3759 442 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKI------------------QNIDR------------ 487 (844)
Q Consensus 442 ~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~------------------~~~~~------------ 487 (844)
.-+.+.+++.++.|....+.|+++|+|+|++ +.+..+.... ...++
T Consensus 13 va~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~ 92 (447)
T COG0527 13 VADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPFIAARLAEVIAE 92 (447)
T ss_pred cCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcchhhhhHhhhHhh
Confidence 3467889999999999888899999999983 2222222210 00011
Q ss_pred --------------chHHHHHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHH-HHHHHh
Q psy3759 488 --------------STADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLN-AIKYLE 541 (844)
Q Consensus 488 --------------~~~~~~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~-l~~lL~ 541 (844)
.......++++|+ ++.+|+.+|+..|+++..+++++.... +....... +..+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~ 172 (447)
T COG0527 93 FKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLE 172 (447)
T ss_pred hhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhc
Confidence 3345555566665 788999999999999999999876322 22233445 788899
Q ss_pred CCCEEEEeCCCCCCC---Cc------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---h
Q psy3759 542 EGKVVIFAGGIGNPF---FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---K 609 (844)
Q Consensus 542 ~g~VPVv~G~~G~~~---~s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~ 609 (844)
.|.|||++||+|... .+ +|++|+.||.+|+||++.||||||||||+||+..|+|++|++++|+|+.+ .
T Consensus 173 ~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~ 252 (447)
T COG0527 173 EGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYL 252 (447)
T ss_pred CCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHC
Confidence 999999999988542 22 99999999999999999999999999999999999999999999999988 8
Q ss_pred ccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEecc-h-h-hh------hh--hhhhHHHhHHHHHHH
Q psy3759 610 KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY-I-M-II------SD--IKKNTKQKMLNTIKI 678 (844)
Q Consensus 610 G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~-~-m-~~------~~--i~~~~~~~m~~~v~~ 678 (844)
|+++.|++|+++|.+++||++|.|.++|+ ..||+|+++. . . .+ +. .+.-....|....-.
T Consensus 253 GAkVLHprav~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~~~~~v~gIa~~~~~~~i~v~~~~~~~~~g~ 323 (447)
T COG0527 253 GAKVLHPRAVEPAMRSGIPLRIKNTFNPD---------APGTLITAETESDEPVVKGIALDDNVALITVSGPGMNGMVGF 323 (447)
T ss_pred CchhcCHHHHHHHHhcCCcEEEEecCCCC---------CCceEEecCCcCCCCceEEEEeCCCeEEEEEEccCccccccH
Confidence 99999999999999999999999999884 4799999872 1 0 10 11 111112223333333
Q ss_pred HHHHHHhhhcCCCcccccc------eeEEEecccccc-----cc-----eeeeeeccCC-ceEEEecC----CcccHHHH
Q psy3759 679 LKENLKKVRTGRANIGMLD------NIQVKYHEHLTK-----LL-----KIANITLFNS-HTISIQPF----EKEMSSII 737 (844)
Q Consensus 679 ~~~~l~~irtgr~~p~~ld------~i~V~~~g~~~~-----l~-----~~A~i~~~~~-~~l~i~~~----d~~~~~~i 737 (844)
+.+-|.-+.-...++.++- ++.....+...+ |. +...+.+..+ ..+.+--. .|.....+
T Consensus 324 ~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~ 403 (447)
T COG0527 324 AARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGVAARI 403 (447)
T ss_pred HHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccccCcCHHHHH
Confidence 4444555555566666662 222323332221 11 1112333322 22222111 36688889
Q ss_pred HHHHHhcCCCCcceec-CCeeEEeCCCCCHHHHHHHHHHHHHH
Q psy3759 738 KKAINEANLGLNPTIQ-GNIIYVSIPPLTKERREEIVKLIKNI 779 (844)
Q Consensus 738 ~kAi~~s~l~~~p~~~-~~~i~v~iP~~T~E~R~~l~K~~k~~ 779 (844)
.+|+.+.++|+.-... ...|.+.|+ ++..++.++.+.+.
T Consensus 404 f~aL~~~~ini~~issSe~~Is~vV~---~~~~~~av~~LH~~ 443 (447)
T COG0527 404 FQALAEENINIIMISSSEISISFVVD---EKDAEKAVRALHEA 443 (447)
T ss_pred HHHHHhCCCcEEEEEcCCceEEEEEc---cHHHHHHHHHHHHH
Confidence 9999988887776653 346666664 34444455544443
No 54
>PRK08841 aspartate kinase; Validated
Probab=99.92 E-value=2.2e-24 Score=241.84 Aligned_cols=205 Identities=21% Similarity=0.277 Sum_probs=162.9
Q ss_pred cccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccccccCC-CcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Q psy3759 442 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNI-DRSTADYMGMLATIINSLALFDILNKSGIIS 516 (844)
Q Consensus 442 ~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a 516 (844)
.-+.+.+++++++|+.+.+.|+++|+||||| +...+........ ++.+++.....+......+++.+|++.|+++
T Consensus 13 v~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a 92 (392)
T PRK08841 13 VGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAA 92 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 3467889999999999999999999999984 3333322221111 2333444433333346778888999999999
Q ss_pred eEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEe
Q psy3759 517 HVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKA 578 (844)
Q Consensus 517 ~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~---~~------s~D~lAa~lA~~l~Ad~Liil 578 (844)
+.+++.+.... +..++.+.+..+++.|.|||++|+.|.. .+ .+|++|+.+|.+|+||.|++|
T Consensus 93 ~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~ 172 (392)
T PRK08841 93 RSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIF 172 (392)
T ss_pred EEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEE
Confidence 99998875211 2234567888999999999999986631 22 389999999999999999999
Q ss_pred ecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759 579 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 579 TDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 655 (844)
|||||||++||+.+|+|++|++++++|+.+ .|++++|+.|+++|.++|+|++|.|++++ ..||+|..
T Consensus 173 TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~----------~~GT~I~~ 242 (392)
T PRK08841 173 TDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV----------GEGTLIKG 242 (392)
T ss_pred eCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCC----------CCCeEEEe
Confidence 999999999999999999999999998876 79999999999999999999999999864 25999975
Q ss_pred c
Q psy3759 656 I 656 (844)
Q Consensus 656 ~ 656 (844)
+
T Consensus 243 ~ 243 (392)
T PRK08841 243 E 243 (392)
T ss_pred c
Confidence 4
No 55
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.92 E-value=1.3e-24 Score=227.46 Aligned_cols=190 Identities=24% Similarity=0.269 Sum_probs=154.8
Q ss_pred cchhhhhhhhhhhhhhhCCCeEEEEeCchHH-hhhccccccCCCcchHHHHHHHHHHH--HHHHHHHHHHHcCCceeEee
Q psy3759 444 NSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATII--NSLALFDILNKSGIISHVMS 520 (844)
Q Consensus 444 d~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~~L~~~gi~a~~l~ 520 (844)
+++.+++++++|+.+ ..|+++|||||||.. ...+... ..+++.|+ +..+++.+|+.+|+++..++
T Consensus 13 ~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~-----------~~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~ 80 (227)
T cd04234 13 SAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIEL-----------ALLLSFGERLSARLLAAALRDRGIKARSLD 80 (227)
T ss_pred CHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence 456899999999999 889999999998522 2111111 13343443 57778889999999999998
Q ss_pred hhchhhh---------hhccchHHHHHHHhC-CCEEEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEeecc
Q psy3759 521 AISIEKF---------LESYIPLNAIKYLEE-GKVVIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKATKV 581 (844)
Q Consensus 521 ~~~~~~~---------~~~~~~~~l~~lL~~-g~VPVv~G~~G~~---~~------s~D~lAa~lA~~l~Ad~LiilTDV 581 (844)
+.++... ....+.+.+..+++. |.|||++|+.|.+ .+ ++|++|+.+|.+|+||+|+++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV 160 (227)
T cd04234 81 ARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDV 160 (227)
T ss_pred HHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECC
Confidence 8775221 334567889999999 9999999965422 22 389999999999999999999999
Q ss_pred cccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 582 DGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 582 dGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
|||||+||+.+|++++|++++++|+.+ .|++++++.|+++|.++|+|++|.|+.+|+ ..||+|+
T Consensus 161 ~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~ 227 (227)
T cd04234 161 DGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT 227 (227)
T ss_pred CccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence 999999999999999999999998877 689999999999999999999999999874 3599984
No 56
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.92 E-value=7.1e-25 Score=235.01 Aligned_cols=200 Identities=17% Similarity=0.227 Sum_probs=163.3
Q ss_pred hhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc----------C-----CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy3759 450 NIISEISEIVSCGIELAIVIGGGNICRGISNKIQ----------N-----IDRSTADYMGMLATIINSLALFDILNKSGI 514 (844)
Q Consensus 450 ~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 514 (844)
+++.+|+.+...|.++|||||||.+.+....... + .++.+++...+... ..+..+.+.|.++|+
T Consensus 16 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~-~ln~~lv~~L~~~Gv 94 (268)
T PRK14058 16 DALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMA-LINKQLVERLQSLGV 94 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence 4689999998999999999999966665443221 1 25556666665555 666667789999999
Q ss_pred ceeEeehhchhhh--------------------------hhccchHHHHHHHhCCCEEEEeCCC----CCC-CCcchHHH
Q psy3759 515 ISHVMSAISIEKF--------------------------LESYIPLNAIKYLEEGKVVIFAGGI----GNP-FFTTDTTA 563 (844)
Q Consensus 515 ~a~~l~~~~~~~~--------------------------~~~~~~~~l~~lL~~g~VPVv~G~~----G~~-~~s~D~lA 563 (844)
+++++++.+.+.+ +..++.+.+..++++|+|||++|.. |.. ++++|++|
T Consensus 95 ~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A 174 (268)
T PRK14058 95 NAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAA 174 (268)
T ss_pred CccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHH
Confidence 9999998775221 3456789999999999999999832 222 36799999
Q ss_pred HHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-----hccccchHHHHHHHHhCCC-CEEEEecCCc
Q psy3759 564 ALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIKS 637 (844)
Q Consensus 564 a~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-----~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~~ 637 (844)
+.+|.+++||+|+|+|||||||++||+ ++++|++++.+++.+ +|+|..|+.++..+.+.|+ +++|++|..|
T Consensus 175 ~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~ 251 (268)
T PRK14058 175 AAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVD 251 (268)
T ss_pred HHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 999999999999999999999999984 468999999887765 6999999999999999999 7999999999
Q ss_pred chHHHHHcCCcccEEEEe
Q psy3759 638 GALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 638 ~~i~~~l~Ge~~GT~I~~ 655 (844)
+++.++|.|+ ||+|.+
T Consensus 252 ~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 252 DPISAALAGE--GTVIVN 267 (268)
T ss_pred chHHHHhCCC--ceEEec
Confidence 9999999886 999975
No 57
>PRK06635 aspartate kinase; Reviewed
Probab=99.92 E-value=6.8e-24 Score=241.27 Aligned_cols=278 Identities=23% Similarity=0.296 Sum_probs=202.8
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccc---cC-CCcchHHHHHHHH
Q psy3759 423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI---QN-IDRSTADYMGMLA 497 (844)
Q Consensus 423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~---~~-~~~~~~~~~~~~~ 497 (844)
++|+|. +|+++ -+++.+++++++|..+.+.|+++|+|||| |.....+.... .. .++..++....+.
T Consensus 3 ~iViK~--GGs~l-------~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~G 73 (404)
T PRK06635 3 LIVQKF--GGTSV-------GDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTG 73 (404)
T ss_pred eEEEeE--CCccc-------CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhh
Confidence 456675 44433 35678999999999999899999999997 32222221111 11 1334444444333
Q ss_pred HHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C---cc
Q psy3759 498 TIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TT 559 (844)
Q Consensus 498 ~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~---~---~---s~ 559 (844)
...++.+++.+|+.+|++++.+++.++... +..++.+.+..+++.|.|||++|+.|.+ . + ++
T Consensus 74 e~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~s 153 (404)
T PRK06635 74 EQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGS 153 (404)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCCh
Confidence 445777899999999999999998776321 2345678899999999999999976532 1 2 48
Q ss_pred hHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCC
Q psy3759 560 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIK 636 (844)
Q Consensus 560 D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~ 636 (844)
|++|+++|..++||+|++||||||||++||+.+|++++|++++++|+.+ .|++++++.|+.++.++|+|++|.|+++
T Consensus 154 D~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~ 233 (404)
T PRK06635 154 DTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS 233 (404)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCC
Confidence 9999999999999999999999999999999999999999999998877 7999999999999999999999999876
Q ss_pred cchHHHHHcCCcccEEEEecchhhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeee
Q psy3759 637 SGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANI 716 (844)
Q Consensus 637 ~~~i~~~l~Ge~~GT~I~~~~~m~~~~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i 716 (844)
+ ..||.|.+... ..| ....+..|. -..+++.|
T Consensus 234 ~----------~~gT~i~~~~~-----------~~~-------------------~~~~i~~I~--------~~~~v~~I 265 (404)
T PRK06635 234 D----------NPGTLITGEEE-----------EIM-------------------EQPVVTGIA--------FDKDEAKV 265 (404)
T ss_pred C----------CCCCEEeeCCc-----------ccc-------------------ccCceEEEE--------ecCCeEEE
Confidence 4 35999986421 000 001122222 24567777
Q ss_pred eccCCceEEEecCCcccHHHHHHHHHhcCCCCcceecC------CeeEEeCCC
Q psy3759 717 TLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQG------NIIYVSIPP 763 (844)
Q Consensus 717 ~~~~~~~l~i~~~d~~~~~~i~kAi~~s~l~~~p~~~~------~~i~v~iP~ 763 (844)
++.+ -+-.+..+..|.+++.+.+.++.-...+ ..+.+.+|.
T Consensus 266 sv~g------~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~ 312 (404)
T PRK06635 266 TVVG------VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR 312 (404)
T ss_pred EECC------CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH
Confidence 7755 1345778899999999888777654332 467777753
No 58
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.92 E-value=2e-24 Score=228.40 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=156.5
Q ss_pred ccchhhhhhhhhhhhhhhCCCeEEEEeCc-----hHH----hhhcccc-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Q psy3759 443 INSSIIKNIISEISEIVSCGIELAIVIGG-----GNI----CRGISNK-IQNIDRSTADYMGMLATIINSLALFDILNKS 512 (844)
Q Consensus 443 id~~~i~~~a~~I~~l~~~G~~vVIVhGG-----G~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~ 512 (844)
-+++.+++++++|+.+.+.|++++||||| |.. ..+.... ....++..++.............++++|+.+
T Consensus 12 ~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~ 91 (244)
T cd04260 12 STKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIISAVVLTSTLRAQ 91 (244)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 35667899999999999999988877753 211 1111111 1123344444443333334566799999999
Q ss_pred CCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCC---CCC---C---cchHHHHHHHHHcCCcE
Q psy3759 513 GIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIG---NPF---F---TTDTTAALRAAEIKAEI 574 (844)
Q Consensus 513 gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G---~~~---~---s~D~lAa~lA~~l~Ad~ 574 (844)
|++++.+++.+...+ +..++.+.+..+++.|+|||++|+.| +.. + ++|++|+.+|.+|+||+
T Consensus 92 Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~ 171 (244)
T cd04260 92 GLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEY 171 (244)
T ss_pred CCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCE
Confidence 999999988764221 23457788999999999999999643 222 2 38999999999999999
Q ss_pred EEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccE
Q psy3759 575 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 651 (844)
Q Consensus 575 LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT 651 (844)
|+++|||||||++||+.+|++++|++++++|+.+ .|..++|+.|++.|.++++|++|.|+++|+ .||
T Consensus 172 l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~----------~gt 241 (244)
T cd04260 172 VEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN----------PGT 241 (244)
T ss_pred EEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC----------CCC
Confidence 9999999999999999999999999999988877 788999999999999999999999998762 599
Q ss_pred EEE
Q psy3759 652 LVY 654 (844)
Q Consensus 652 ~I~ 654 (844)
+|+
T Consensus 242 ~i~ 244 (244)
T cd04260 242 LIT 244 (244)
T ss_pred EeC
Confidence 884
No 59
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.92 E-value=2.7e-24 Score=258.37 Aligned_cols=235 Identities=17% Similarity=0.163 Sum_probs=178.8
Q ss_pred hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhcccccc----C----CCcchHH
Q psy3759 421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQ----N----IDRSTAD 491 (844)
Q Consensus 421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~----~----~~~~~~~ 491 (844)
.+++|+|+ +++ +++++++.++.+.+.+++++|+.|++.|+++|||+|| |...+....... + ..+....
T Consensus 7 ~~~iViKi--Gss-~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (715)
T TIGR01092 7 VKRIVVKV--GTA-VVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPEL 83 (715)
T ss_pred CCEEEEEe--Ccc-eeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchH
Confidence 46789996 555 4545557799999999999999999999999997776 444443333221 0 1244455
Q ss_pred HHHHHHHHHHHHHHHHH---HHHcCCcee--Eeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCCCC----------
Q psy3759 492 YMGMLATIINSLALFDI---LNKSGIISH--VMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP---------- 555 (844)
Q Consensus 492 ~~~~~~~~~~~~ll~~~---L~~~gi~a~--~l~~~~~~~~-~~~~~~~~l~~lL~~g~VPVv~G~~G~~---------- 555 (844)
..+++++.+++.++..| |..+++.+. .++..++... ........+..+|+.|+|||++++....
T Consensus 84 ~~qa~aa~gq~~L~~~y~~~f~~~~i~~aQ~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~ 163 (715)
T TIGR01092 84 DGKACAAVGQSGLMALYETMFTQLDITAAQILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQ 163 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeEEEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCccccccccccccc
Confidence 66777777777776665 888888763 3333333222 2222457889999999999998622111
Q ss_pred --CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHH-h----------hccccchHHHHHHH
Q psy3759 556 --FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFC 622 (844)
Q Consensus 556 --~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~-~----------~G~~v~~~~Aa~~a 622 (844)
++++|++|++||.+++||+|+++|||||||++||+ +|++++|++++..+.. . +|||..|+.|+..|
T Consensus 164 g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a 242 (715)
T TIGR01092 164 GIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWA 242 (715)
T ss_pred ceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHH
Confidence 45699999999999999999999999999999996 5999999988754222 1 68999999999999
Q ss_pred HhCCCCEEEEecCCcchHHHHHcCCcccEEEEecchh
Q psy3759 623 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIM 659 (844)
Q Consensus 623 ~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~m 659 (844)
.++|++++|+||..+++|.+++.|+..||+|.+..+|
T Consensus 243 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 243 AYGGTPVIIASGTAPKNITKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred HHCCCeEEEeCCCCcchHHHHhcCCCCceEecccchh
Confidence 9999999999999999999999999899999987544
No 60
>KOG0830|consensus
Probab=99.92 E-value=4.9e-25 Score=218.83 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=146.4
Q ss_pred CCCCcCcccccc-CCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCCCC
Q psy3759 23 NPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT 101 (844)
Q Consensus 23 np~m~~yi~g~r-~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lT 101 (844)
|..|.+|+|+.| +|+|||||.+|++.|..|...|..+ .+...|-.+++++..+.+|.+||..+|...|.+++.||+||
T Consensus 2 ~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~ai-enp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft 80 (254)
T KOG0830|consen 2 NFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT 80 (254)
T ss_pred CcccccccccccCCceEEeeccccHHHHHHHHHHHhhc-cCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccc
Confidence 678999999988 6899999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcchHHHHHHhcCCC
Q psy3759 102 NFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181 (844)
Q Consensus 102 N~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP 181 (844)
|..+- .| +.|.++|++||+.|++++.|+...|+|
T Consensus 81 n~iq~-----------------~f-----------------------------~epr~lvvtdpr~d~q~~~E~s~~n~p 114 (254)
T KOG0830|consen 81 NQIQA-----------------AF-----------------------------REPRLLVVTDPRADHQPLTEASYVNLP 114 (254)
T ss_pred hHHHH-----------------hh-----------------------------cCCceeeecCcccccchhhhhhhcCCc
Confidence 96641 11 479999999999999999999999999
Q ss_pred EEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225 (844)
Q Consensus 182 ~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~ 225 (844)
||+|||||+...++|..|||||++..||.+++|+|++.+++.+.
T Consensus 115 ~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~ww~LareVLrmrg 158 (254)
T KOG0830|consen 115 TIALCNTDSPLCYVDIAIPCNNKGAHSVGVMWWMLAREVLRMRG 158 (254)
T ss_pred eEEEecCCCccceeeeeeecCCCCcccchhhhhhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999887663
No 61
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.91 E-value=3.2e-24 Score=231.36 Aligned_cols=208 Identities=17% Similarity=0.168 Sum_probs=169.1
Q ss_pred cchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc-------cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy3759 444 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QN---IDRSTADYMGMLATIINSLALFDILNKSG 513 (844)
Q Consensus 444 d~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~g 513 (844)
++...+.++++|+.|...|.++|||||||.+.+...... .+ .++.+++...++.++..+..+.+.|..+|
T Consensus 37 ~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~L~~~G 116 (284)
T CHL00202 37 NLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVGSINANG 116 (284)
T ss_pred CcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCC
Confidence 344556899999999999999999999997655433321 12 25666788888888888999999999999
Q ss_pred CceeEeehhchhh---------------hhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCc
Q psy3759 514 IISHVMSAISIEK---------------FLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAE 573 (844)
Q Consensus 514 i~a~~l~~~~~~~---------------~~~~~~~~~l~~lL~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~l~Ad 573 (844)
++++++++.+.+. .+..++.+.+..+++.|.|||++|. .|.. ++++|++|+.+|.+|+||
T Consensus 117 v~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad 196 (284)
T CHL00202 117 GKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAE 196 (284)
T ss_pred CCeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCC
Confidence 9999999987531 1445788999999999999999983 1222 467999999999999999
Q ss_pred EEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCCC-EEEEecCCcch-HHHHH
Q psy3759 574 IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGA-LKRVI 644 (844)
Q Consensus 574 ~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi~-v~I~~g~~~~~-i~~~l 644 (844)
+|+|+|||||||+++++ | .++|++++.+++.+ +|||..|+.+|..|.+.|++ ++|++|..|+. +.+++
T Consensus 197 ~li~lTdv~Gv~~~~~d--~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~ 273 (284)
T CHL00202 197 KLILLTDTPGILADIND--P-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEIL 273 (284)
T ss_pred EEEEEeCChhhcCCCCC--C-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHh
Confidence 99999999999985321 3 36899998877654 58999999999999999986 78999999987 58888
Q ss_pred cCCcccEEEE
Q psy3759 645 EGKNEGTLVY 654 (844)
Q Consensus 645 ~Ge~~GT~I~ 654 (844)
.++..||+|+
T Consensus 274 ~~~g~GT~i~ 283 (284)
T CHL00202 274 TEKGIGSMLV 283 (284)
T ss_pred cCCCCceEEe
Confidence 8888999985
No 62
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.91 E-value=4.1e-24 Score=242.84 Aligned_cols=204 Identities=22% Similarity=0.239 Sum_probs=161.5
Q ss_pred ccchhhhhhhhhhhhhhhCCCeEEEEeCchH-Hhhhccccc-----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Q psy3759 443 INSSIIKNIISEISEIVSCGIELAIVIGGGN-ICRGISNKI-----QNIDRSTADYMGMLATIINSLALFDILNKSGIIS 516 (844)
Q Consensus 443 id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a 516 (844)
.+.+.+++++++|+.+.+.|+++++|||||. ....+.... ...++...+.+.......++.+++.+|+++|+++
T Consensus 13 ~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a 92 (401)
T TIGR00656 13 GSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKA 92 (401)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCce
Confidence 3567899999999999889999999999952 211111111 1122333444444444446889999999999999
Q ss_pred eEeehhchhh---------hhhccch-HHHHHHHhCCCEEEEeCCCCCC--C-C------cchHHHHHHHHHcCCcEEEE
Q psy3759 517 HVMSAISIEK---------FLESYIP-LNAIKYLEEGKVVIFAGGIGNP--F-F------TTDTTAALRAAEIKAEIILK 577 (844)
Q Consensus 517 ~~l~~~~~~~---------~~~~~~~-~~l~~lL~~g~VPVv~G~~G~~--~-~------s~D~lAa~lA~~l~Ad~Lii 577 (844)
+.+++.+... .+...+. +.+..+++.|.|||++|+.|.+ + . .+|++|+.+|.+|+||.|++
T Consensus 93 ~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i 172 (401)
T TIGR00656 93 IWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDI 172 (401)
T ss_pred EEeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEE
Confidence 9998766421 1223344 8899999999999999976521 2 1 27999999999999999999
Q ss_pred eecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 578 ATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 578 lTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
|||||||||+||+.+|+++++++++++|+.+ .|++++|++|+.+|.++++|++|.|+++|+ .||+|+
T Consensus 173 ~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~ 242 (401)
T TIGR00656 173 YTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLIT 242 (401)
T ss_pred EECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEE
Confidence 9999999999999999999999999999987 799999999999999999999999999873 499997
Q ss_pred ec
Q psy3759 655 EI 656 (844)
Q Consensus 655 ~~ 656 (844)
+.
T Consensus 243 ~~ 244 (401)
T TIGR00656 243 NS 244 (401)
T ss_pred eC
Confidence 64
No 63
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.91 E-value=5.2e-24 Score=227.83 Aligned_cols=226 Identities=21% Similarity=0.221 Sum_probs=172.9
Q ss_pred hHHHHHHHhhhhhhhcCCCCcccc---hhhhhhhhhhhhhhhCCCeEEEEeCchH----Hhhhcccccc-CCCcchHHHH
Q psy3759 422 SLAVLKAQQLGEALMKGDAYNINS---SIIKNIISEISEIVSCGIELAIVIGGGN----ICRGISNKIQ-NIDRSTADYM 493 (844)
Q Consensus 422 ~~iv~k~~~~~~~l~~g~~~~id~---~~i~~~a~~I~~l~~~G~~vVIVhGGG~----~~~~~~~~~~-~~~~~~~~~~ 493 (844)
+++|+.+ +|.+++..+...... +.++..|++|+++.+.|++++|+||+|. .+++...... +.++.++|.+
T Consensus 3 ~~ivval--gGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~ 80 (313)
T PRK12454 3 KRIVIAL--GGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVA 80 (313)
T ss_pred ceEEEEe--ChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchh
Confidence 3567777 888888644333332 4789999999999999999999999974 5554333332 3677889999
Q ss_pred HHHHHHHHHHHHHHH----HHHcCCceeEeehhch-----------------hh--------------------------
Q psy3759 494 GMLATIINSLALFDI----LNKSGIISHVMSAISI-----------------EK-------------------------- 526 (844)
Q Consensus 494 ~~~~~~~~~~ll~~~----L~~~gi~a~~l~~~~~-----------------~~-------------------------- 526 (844)
.+.++|+.+++|+.+ |..+|+.....+..+. +.
T Consensus 81 ~a~sqG~igy~l~~al~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~ 160 (313)
T PRK12454 81 GAMTQGWIGYMIQQALRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGW 160 (313)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCce
Confidence 999999999988777 5777766532222110 00
Q ss_pred --------hhhccchHHHHHHHhCCCEEEEeCCCCCCCCc-------------chHHHHHHHHHcCCcEEEEeecccccc
Q psy3759 527 --------FLESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIY 585 (844)
Q Consensus 527 --------~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s-------------~D~lAa~lA~~l~Ad~LiilTDVdGVy 585 (844)
....++.+.+..+|+.|.|||++|+.|+|.++ +|.+|+++|..|+||+|+|+|||||||
T Consensus 161 RrvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy 240 (313)
T PRK12454 161 RRVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVY 240 (313)
T ss_pred EEEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceee
Confidence 01224578899999999999999987777432 599999999999999999999999999
Q ss_pred cCCCCCCCCceeecccCHHHHHh--------hccccchHHHH-HHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759 586 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 586 t~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 655 (844)
++++ .|++++|++++.+++.+ .|+|.+|+.|+ +++.+.+.+++|++ ++.+.++|.|+ .||+|.+
T Consensus 241 ~~~~--~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 241 LNYG--KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CCCC--CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 9744 48899999999988755 58899999988 55555567888874 66799999998 7999964
No 64
>PLN02512 acetylglutamate kinase
Probab=99.91 E-value=8e-24 Score=230.68 Aligned_cols=208 Identities=17% Similarity=0.198 Sum_probs=168.0
Q ss_pred chhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc-------cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy3759 445 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QN---IDRSTADYMGMLATIINSLALFDILNKSGI 514 (844)
Q Consensus 445 ~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 514 (844)
++....++++|+.|...|.++|||||||.+.+.+.... .+ .++..++.+.+...+..+..+++.|.++|+
T Consensus 62 ~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv 141 (309)
T PLN02512 62 PELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGG 141 (309)
T ss_pred hhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 34556788899988889999999999997655433221 11 255566777777788888999999999999
Q ss_pred ceeEeehhchh----------------hhhhccchHHHHHHHhCCCEEEEeCCC----CC-CCCcchHHHHHHHHHcCCc
Q psy3759 515 ISHVMSAISIE----------------KFLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTTAALRAAEIKAE 573 (844)
Q Consensus 515 ~a~~l~~~~~~----------------~~~~~~~~~~l~~lL~~g~VPVv~G~~----G~-~~~s~D~lAa~lA~~l~Ad 573 (844)
+++++++.+.+ ..+..++.+.+..+++.|.|||++|.. |. .++++|++|+.+|.+|+||
T Consensus 142 ~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad 221 (309)
T PLN02512 142 TAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAE 221 (309)
T ss_pred CeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCC
Confidence 99999987641 114457889999999999999999831 11 1357999999999999999
Q ss_pred EEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCCC-EEEEecCCcchHH-HHH
Q psy3759 574 IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGALK-RVI 644 (844)
Q Consensus 574 ~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi~-v~I~~g~~~~~i~-~~l 644 (844)
+|+++|||||||+++| +++++|++++.+++.+ +|||..|+.++..+.+.|++ ++|++|..|+.+. +++
T Consensus 222 ~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~ 298 (309)
T PLN02512 222 KLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEIL 298 (309)
T ss_pred EEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHh
Confidence 9999999999999864 3478899999887755 69999999999998999995 8999999998865 677
Q ss_pred cCCcccEEEEe
Q psy3759 645 EGKNEGTLVYE 655 (844)
Q Consensus 645 ~Ge~~GT~I~~ 655 (844)
.++..||+|.+
T Consensus 299 ~~~~~GT~I~~ 309 (309)
T PLN02512 299 TDEGAGTMITG 309 (309)
T ss_pred cCCCCeeEEeC
Confidence 78888999974
No 65
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.91 E-value=7.6e-24 Score=230.52 Aligned_cols=226 Identities=22% Similarity=0.209 Sum_probs=161.5
Q ss_pred hHHHHHHHhhhhhhhcC-CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchH----Hhhhcccccc---CCCcchHHHH
Q psy3759 422 SLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGN----ICRGISNKIQ---NIDRSTADYM 493 (844)
Q Consensus 422 ~~iv~k~~~~~~~l~~g-~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~----~~~~~~~~~~---~~~~~~~~~~ 493 (844)
+++|+|+ +|+++..+ ++..++.+.+..++++|+.+.+.|+++|||||||. ..++...... ..+....+..
T Consensus 3 ~~iVIkl--GG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (314)
T PRK12353 3 KKIVVAL--GGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVC 80 (314)
T ss_pred cEEEEEE--CHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHH
Confidence 5678887 77776643 23458999999999999999999999999999953 3333222110 1122223333
Q ss_pred HHHHHHHHHH----HHHHHHHHcCCce--------eEeehhchh--h-------h------------------------h
Q psy3759 494 GMLATIINSL----ALFDILNKSGIIS--------HVMSAISIE--K-------F------------------------L 528 (844)
Q Consensus 494 ~~~~~~~~~~----ll~~~L~~~gi~a--------~~l~~~~~~--~-------~------------------------~ 528 (844)
.+..+++.+. .+...|..+|+.. +.+++.+.. . + .
T Consensus 81 ~a~~qg~l~~~l~~~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (314)
T PRK12353 81 GAMSQGYIGYHLQNALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGY 160 (314)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCcee
Confidence 3444443333 3444477777622 122332210 0 0 0
Q ss_pred ----------hccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeecccccc
Q psy3759 529 ----------ESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIY 585 (844)
Q Consensus 529 ----------~~~~~~~l~~lL~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~l~Ad~LiilTDVdGVy 585 (844)
..++.+.+..+|++|+|||++|+.|.|. .++|++|+++|.+++||+|+++|||||||
T Consensus 161 r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy 240 (314)
T PRK12353 161 RRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVY 240 (314)
T ss_pred EeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 0134688999999999999998765553 33699999999999999999999999999
Q ss_pred cCCCCCCCCceeecccCHHHHHh--------hccccchHHHHHHHH--hCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759 586 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 586 t~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa~~a~--~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 655 (844)
+++| .|++++|++++..++.+ +|+|.+|+.||..+. +.|++++|++ ++++.+++.|+ .||+|.|
T Consensus 241 ~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 241 INFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK 314 (314)
T ss_pred CCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence 9766 38999999999877654 588999999886665 7799999997 67899999998 8999964
No 66
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.91 E-value=1.9e-23 Score=250.46 Aligned_cols=232 Identities=17% Similarity=0.202 Sum_probs=174.5
Q ss_pred hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc----hHHhhhccccccC----C--CcchH
Q psy3759 421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQN----I--DRSTA 490 (844)
Q Consensus 421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG----G~~~~~~~~~~~~----~--~~~~~ 490 (844)
.+++|+|+ +++++. +..+.++...+.+++++|+++++.|+++|||+|| |+...++...... + +....
T Consensus 15 ~~~iViK~--G~ssl~-~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 91 (718)
T PLN02418 15 VKRVVIKV--GTAVVT-RDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMEL 91 (718)
T ss_pred CCEEEEEe--CCCeec-CCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchH
Confidence 46789996 666554 4556799999999999999999999999999998 4444444332111 1 12233
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHcCCcee--Eeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCCCC---------
Q psy3759 491 DYMGMLATIINSL---ALFDILNKSGIISH--VMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP--------- 555 (844)
Q Consensus 491 ~~~~~~~~~~~~~---ll~~~L~~~gi~a~--~l~~~~~~~~-~~~~~~~~l~~lL~~g~VPVv~G~~G~~--------- 555 (844)
+. +++++.++.. ++..+|+.+|+++. .++..++... ........+..+|+.|.|||+++.....
T Consensus 92 ~~-qa~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~ 170 (718)
T PLN02418 92 DG-KACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDS 170 (718)
T ss_pred HH-HHHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccc
Confidence 33 4445555444 44455999999774 3333333211 2223457888999999999998732211
Q ss_pred --CC-cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHH-----------hhccccchHHHHHH
Q psy3759 556 --FF-TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-----------SKKLEIMDSTAFSF 621 (844)
Q Consensus 556 --~~-s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~-----------~~G~~v~~~~Aa~~ 621 (844)
.+ .+|++|+++|.+++||.|+|+|||||||++||+ +|++++|++++..+.. -+|||.+|+.|+..
T Consensus 171 ~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~ 249 (718)
T PLN02418 171 SGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVN 249 (718)
T ss_pred cCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHH
Confidence 22 499999999999999999999999999999997 5899999998653321 17899999999999
Q ss_pred HHhCCCCEEEEecCCcchHHHHHcCCcccEEEEecc
Q psy3759 622 CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY 657 (844)
Q Consensus 622 a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~ 657 (844)
|.++|++++|+||..|++|.+++.|+..||+|.+..
T Consensus 250 a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 285 (718)
T PLN02418 250 AASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDA 285 (718)
T ss_pred HHHCCCcEEEeCCCCcchHHHHhcCCCCceEecccc
Confidence 999999999999999999999999999999999863
No 67
>PRK12686 carbamate kinase; Reviewed
Probab=99.90 E-value=2.2e-23 Score=223.67 Aligned_cols=225 Identities=16% Similarity=0.189 Sum_probs=168.7
Q ss_pred hHHHHHHHhhhhhhhcCC-CCcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhcccccc-CCCcchHHHHHH
Q psy3759 422 SLAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDRSTADYMGM 495 (844)
Q Consensus 422 ~~iv~k~~~~~~~l~~g~-~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~~~~~~~~~~~~ 495 (844)
+++|+.+ +|.++...+ ........++.+|++|+.|...|+++||+||+| +..+....... ..++.++|.+.+
T Consensus 3 ~~iVial--GGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a 80 (312)
T PRK12686 3 EKIVIAL--GGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVA 80 (312)
T ss_pred CEEEEEc--ChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhh
Confidence 3567776 788877533 223445578999999999999999999999997 33332222222 357889999999
Q ss_pred HHHHHHHHHHHHH----HHHcCCce--eE------eehhch-------------------------h-----h-------
Q psy3759 496 LATIINSLALFDI----LNKSGIIS--HV------MSAISI-------------------------E-----K------- 526 (844)
Q Consensus 496 ~~~~~~~~ll~~~----L~~~gi~a--~~------l~~~~~-------------------------~-----~------- 526 (844)
.++|..+++|++. |..+++.. +. ++..+. + +
T Consensus 81 ~sqg~iGy~~~q~l~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rr 160 (312)
T PRK12686 81 MSQGMIGYWLQNALNNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRR 160 (312)
T ss_pred hccchhhHHHHHHHHHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEE
Confidence 9999999988887 44455432 11 111110 0 0
Q ss_pred h------hhccchHHHHHHHhCCCEEEEeCCCCCC-------------CCcchHHHHHHHHHcCCcEEEEeecccccccC
Q psy3759 527 F------LESYIPLNAIKYLEEGKVVIFAGGIGNP-------------FFTTDTTAALRAAEIKAEIILKATKVDGIYNS 587 (844)
Q Consensus 527 ~------~~~~~~~~l~~lL~~g~VPVv~G~~G~~-------------~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~ 587 (844)
+ .+-++.+.+..++++|+|||.+|+.|.| .+++|++|++||.+|+||+|+|+|||||||++
T Consensus 161 vV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~ 240 (312)
T PRK12686 161 VVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN 240 (312)
T ss_pred eeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC
Confidence 0 1125778999999999999998875533 13479999999999999999999999999996
Q ss_pred CCCCCCCceeecccCHHHHHh--------hccccchHHHHHHHHhC--CCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 588 DPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQ--KLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 588 dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa~~a~~~--gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
|. .|++++|++++.+++.. +|||.+|+.|+..+.+. |.+++|++ ++.+.++|.|+ .||+|.
T Consensus 241 -~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 241 -FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred -CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 43 48899999999888755 59999999998887754 56888886 67788999998 799985
No 68
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.90 E-value=1.4e-23 Score=226.57 Aligned_cols=218 Identities=19% Similarity=0.225 Sum_probs=168.8
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc-------cC---CCcchHHH
Q psy3759 423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QN---IDRSTADY 492 (844)
Q Consensus 423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-------~~---~~~~~~~~ 492 (844)
.+|+|+ +|+++. +++....++++++.+...|.++|||||||...+.+.... .+ .++..++.
T Consensus 16 ~~ViKl--GGs~i~-------~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~ 86 (279)
T cd04250 16 TVVIKY--GGNAMK-------DEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEI 86 (279)
T ss_pred EEEEEE--ChHHhc-------CccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHH
Confidence 466775 454432 233566788888888888999999999986654433221 11 23344455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------------hhccchHHHHHHHhCCCEEEEeCC
Q psy3759 493 MGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------------LESYIPLNAIKYLEEGKVVIFAGG 551 (844)
Q Consensus 493 ~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------------~~~~~~~~l~~lL~~g~VPVv~G~ 551 (844)
..++.++..+..+++.|.++|++++++++.+.+.+ +..++.+.+..+++.|.|||++|.
T Consensus 87 ~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~ 166 (279)
T cd04250 87 VEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPV 166 (279)
T ss_pred HHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCC
Confidence 55555456677789999999999999998764111 345678999999999999999983
Q ss_pred CCCC------CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHH
Q psy3759 552 IGNP------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTA 618 (844)
Q Consensus 552 ~G~~------~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~A 618 (844)
+.+ ++++|.+|+++|..|+||.|+++|||||||++||+ .+++|++++.+|+.+ +|+|..|+.+
T Consensus 167 -~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~ 242 (279)
T cd04250 167 -GVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEA 242 (279)
T ss_pred -ccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHH
Confidence 321 24599999999999999999999999999999985 378999999887654 6999999999
Q ss_pred HHHHHhCCCC-EEEEecCCcch-HHHHHcCCcccEEE
Q psy3759 619 FSFCRDQKLP-IRVFSIIKSGA-LKRVIEGKNEGTLV 653 (844)
Q Consensus 619 a~~a~~~gi~-v~I~~g~~~~~-i~~~l~Ge~~GT~I 653 (844)
|..+.+.|++ ++|++|..|++ +.+++.++..||.|
T Consensus 243 a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 243 CIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 9999998986 99999999986 57888888899975
No 69
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.89 E-value=3e-23 Score=224.48 Aligned_cols=218 Identities=20% Similarity=0.209 Sum_probs=170.2
Q ss_pred hHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc-------C---CCcchHH
Q psy3759 422 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ-------N---IDRSTAD 491 (844)
Q Consensus 422 ~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~-------~---~~~~~~~ 491 (844)
+++|+|+ +|+.+. +.+.+..++++|+.+.+.|.++|||||||........... + .++.+++
T Consensus 24 ~~iViK~--GGs~l~-------~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~ 94 (283)
T PRK00942 24 KTIVIKY--GGNAMT-------DEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETME 94 (283)
T ss_pred CeEEEEE--ChHHhc-------CcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHH
Confidence 3567775 555432 2235677999999998999999999999865554332111 1 1334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh----------------hhhccchHHHHHHHhCCCEEEEeCCCCCC
Q psy3759 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEK----------------FLESYIPLNAIKYLEEGKVVIFAGGIGNP 555 (844)
Q Consensus 492 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----------------~~~~~~~~~l~~lL~~g~VPVv~G~~G~~ 555 (844)
...++.++..+..+.+.|..+|++++.+++.+.+. .+..++.+.+..+|+.|.|||+++ .|.+
T Consensus 95 ~~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~-~~~~ 173 (283)
T PRK00942 95 VVEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISP-IGVG 173 (283)
T ss_pred HHHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcC-cEEC
Confidence 55555555666778889999999999999876421 134567899999999999999997 2221
Q ss_pred ------CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHH
Q psy3759 556 ------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC 622 (844)
Q Consensus 556 ------~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a 622 (844)
++++|++|+.+|..|+||+|+++|||||||++ ++++|++++++|+.+ +|+|..|+.+|..+
T Consensus 174 ~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~ 247 (283)
T PRK00942 174 EDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDA 247 (283)
T ss_pred CCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 35599999999999999999999999999986 367899999887755 58999999999998
Q ss_pred HhCCC-CEEEEecCCcch-HHHHHcCCcccEEEEe
Q psy3759 623 RDQKL-PIRVFSIIKSGA-LKRVIEGKNEGTLVYE 655 (844)
Q Consensus 623 ~~~gi-~v~I~~g~~~~~-i~~~l~Ge~~GT~I~~ 655 (844)
.+.|+ +++|++|..|++ |.+++.|+.+||.|.+
T Consensus 248 ~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 282 (283)
T PRK00942 248 ARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282 (283)
T ss_pred HHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence 88887 599999999999 8899999999999986
No 70
>PRK08210 aspartate kinase I; Reviewed
Probab=99.89 E-value=5.2e-23 Score=233.72 Aligned_cols=215 Identities=24% Similarity=0.361 Sum_probs=163.6
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHH--------hhhcccc-ccCCCcchHHH
Q psy3759 423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNI--------CRGISNK-IQNIDRSTADY 492 (844)
Q Consensus 423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~--------~~~~~~~-~~~~~~~~~~~ 492 (844)
++|+|+ +|+++ -+++.+.+++++|+.+.+.|++++||||| |.. ..+.... ....++...+.
T Consensus 3 ~iViK~--GGs~l-------~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~ 73 (403)
T PRK08210 3 IIVQKF--GGTSV-------STEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDL 73 (403)
T ss_pred eEEEeE--CCccc-------CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHH
Confidence 456775 44433 24456889999999999999999988865 221 1111110 11223444444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C
Q psy3759 493 MGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F 557 (844)
Q Consensus 493 ~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~---~---~ 557 (844)
+..........+++.+|..+|++++.+++.+...+ +..++.+.+..+++.|.|||++|+.|.+ . +
T Consensus 74 l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l 153 (403)
T PRK08210 74 LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTL 153 (403)
T ss_pred HHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEe
Confidence 43333333566788999999999999998764211 2345678899999999999999975421 1 2
Q ss_pred ---cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEE
Q psy3759 558 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV 631 (844)
Q Consensus 558 ---s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I 631 (844)
++|++|+.+|.+|+||++++||||||||++||+.+|++++|++++++|+.+ .|.+++|+.|+++|.++++|++|
T Consensus 154 ~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i 233 (403)
T PRK08210 154 GRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRI 233 (403)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEE
Confidence 489999999999999999999999999999999999999999999999877 79999999999999999999999
Q ss_pred EecCCcchHHHHHcCCcccEEEEec
Q psy3759 632 FSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 632 ~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
.|++.+ ..||+|.+.
T Consensus 234 ~~~~~~----------~~gT~I~~~ 248 (403)
T PRK08210 234 RSTYSD----------SPGTLITSL 248 (403)
T ss_pred EecCCC----------cCCcEEEec
Confidence 998864 249999864
No 71
>PRK07431 aspartate kinase; Provisional
Probab=99.89 E-value=2.3e-22 Score=238.65 Aligned_cols=205 Identities=22% Similarity=0.263 Sum_probs=161.2
Q ss_pred cccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccccCC-CcchHHHHHHHHH-HH--HHHHHHHHHHHcCCce
Q psy3759 442 NINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNI-DRSTADYMGMLAT-II--NSLALFDILNKSGIIS 516 (844)
Q Consensus 442 ~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~ll~~~L~~~gi~a 516 (844)
..+.+.+++++++|+.+.+.|+++|||||| |.....+......+ ++...+...++.+ |+ +..+++.+|+.+|+++
T Consensus 13 ~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a 92 (587)
T PRK07431 13 VGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSNPPRREMDMLLSTGEQVSIALLSMALHELGQPA 92 (587)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCe
Confidence 357889999999999999999999999996 54433332221111 2223333344433 33 4556667899999999
Q ss_pred eEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCCC-----Cc------chHHHHHHHHHcCCcEEE
Q psy3759 517 HVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-----FT------TDTTAALRAAEIKAEIIL 576 (844)
Q Consensus 517 ~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~-----~s------~D~lAa~lA~~l~Ad~Li 576 (844)
+++++.++... ...++...+..+++.|.|||++|+.|... .+ +|++|+++|.+|+||+++
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~ 172 (587)
T PRK07431 93 ISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACE 172 (587)
T ss_pred EEechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEE
Confidence 99998875322 22345678999999999999999766421 22 799999999999999999
Q ss_pred EeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEE
Q psy3759 577 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653 (844)
Q Consensus 577 ilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I 653 (844)
+||||||||++||+.+|++++|++++++|+.+ .|.+++++.|+.+|.++|+|++|.|++. +..||+|
T Consensus 173 i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~----------~~~GT~i 242 (587)
T PRK07431 173 IYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS----------DAPGTLV 242 (587)
T ss_pred EEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC----------CCCCeEE
Confidence 99999999999999999999999999999877 6999999999999999999999999872 2359999
Q ss_pred Eec
Q psy3759 654 YEI 656 (844)
Q Consensus 654 ~~~ 656 (844)
.+.
T Consensus 243 ~~~ 245 (587)
T PRK07431 243 TSP 245 (587)
T ss_pred EeC
Confidence 865
No 72
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.89 E-value=1.8e-22 Score=218.57 Aligned_cols=149 Identities=19% Similarity=0.292 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHcCCceeEeehhchhhhh-------------hccchHHHHHHHhCCCEEEEeCCCCCC--C----C
Q psy3759 497 ATIINSLALFDILNKSGIISHVMSAISIEKFL-------------ESYIPLNAIKYLEEGKVVIFAGGIGNP--F----F 557 (844)
Q Consensus 497 ~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~-------------~~~~~~~l~~lL~~g~VPVv~G~~G~~--~----~ 557 (844)
+...++.+++.+|+++|++++.+++.+...+. .......+..+++.|.|||++||.|.. + .
T Consensus 125 GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~g~~ttl 204 (298)
T cd04244 125 GERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTL 204 (298)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCCCCEEEe
Confidence 33347888999999999999999988763210 001112345667889999999976632 1 1
Q ss_pred ---cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEE
Q psy3759 558 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV 631 (844)
Q Consensus 558 ---s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I 631 (844)
.+|++|+.+|.+|+||.+++||||||||++||+.+|+++++++++++|+.+ +|++++|+.|+.+|.++|||++|
T Consensus 205 gRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i 284 (298)
T cd04244 205 GRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRV 284 (298)
T ss_pred cCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEE
Confidence 389999999999999999999999999999999999999999999999987 69999999999999999999999
Q ss_pred EecCCcchHHHHHcCCcccEEEE
Q psy3759 632 FSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 632 ~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
.|+++|+ ..||+|+
T Consensus 285 ~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 285 KNTFNPE---------APGTLIT 298 (298)
T ss_pred eeCCCCC---------CCCCEeC
Confidence 9999884 4699984
No 73
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.88 E-value=1.4e-22 Score=215.88 Aligned_cols=192 Identities=19% Similarity=0.239 Sum_probs=155.1
Q ss_pred hhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc----------C-----CCcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy3759 449 KNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ----------N-----IDRSTADYMGMLATIINSLALFDILNKSG 513 (844)
Q Consensus 449 ~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~~~~ll~~~L~~~g 513 (844)
++++++|+.+ |.++|||||||.+.+....... + .++.+++.+..+. +..+..+.+.|.++|
T Consensus 14 ~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~-~~ln~~iv~~L~~~G 89 (257)
T cd04251 14 DKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVM-GLINKKIVARLHSLG 89 (257)
T ss_pred HHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 5789999987 8899999999966554332211 2 2556666777666 666777888999999
Q ss_pred CceeEeehhchhh--------------------------hhhccchHHHHHHHhCCCEEEEeCCC----CC-CCCcchHH
Q psy3759 514 IISHVMSAISIEK--------------------------FLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTT 562 (844)
Q Consensus 514 i~a~~l~~~~~~~--------------------------~~~~~~~~~l~~lL~~g~VPVv~G~~----G~-~~~s~D~l 562 (844)
++++++++.+.+. .+..++.+.+..+++.|+|||++++. |. .++++|++
T Consensus 90 i~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~ 169 (257)
T cd04251 90 VKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRA 169 (257)
T ss_pred CCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHH
Confidence 9999999976421 13456789999999999999998742 21 24679999
Q ss_pred HHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-----hccccchHHHHHHHHhCCC-CEEEEecCC
Q psy3759 563 AALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIK 636 (844)
Q Consensus 563 Aa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-----~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~ 636 (844)
|+.+|.+|+||+|+|+|||||||++ +++|++++.+++.+ +|+|..|+.++..+.+.|+ +++|++|..
T Consensus 170 A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~ 242 (257)
T cd04251 170 AAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARA 242 (257)
T ss_pred HHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999963 57899998877655 6999999999999999988 588999999
Q ss_pred cchHHHHHcCCcccEEE
Q psy3759 637 SGALKRVIEGKNEGTLV 653 (844)
Q Consensus 637 ~~~i~~~l~Ge~~GT~I 653 (844)
|+++.++|.|+ ||+|
T Consensus 243 ~~~l~~~l~g~--gT~i 257 (257)
T cd04251 243 DSPISSALNGG--GTVI 257 (257)
T ss_pred ccHHHHHHcCC--CcCC
Confidence 99999999985 9975
No 74
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.88 E-value=1.7e-22 Score=215.66 Aligned_cols=202 Identities=19% Similarity=0.181 Sum_probs=160.4
Q ss_pred chhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc-------C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy3759 445 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ-------N---IDRSTADYMGMLATIINSLALFDILNKSGI 514 (844)
Q Consensus 445 ~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 514 (844)
+..+.+++++|+.+...|.++|||||||.+.+.+..... + .++.+++...++.++..+..+.++|.++|+
T Consensus 13 ~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i~~~L~~~Gv 92 (256)
T cd04238 13 EELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKELVSLLNRAGG 92 (256)
T ss_pred ccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHHHHHhCCC
Confidence 346678999999888889999999999866554333221 1 134455555555445667778999999999
Q ss_pred ceeEeehhchh-----------------hhhhccchHHHHHHHhCCCEEEEeCCCCCC------CCcchHHHHHHHHHcC
Q psy3759 515 ISHVMSAISIE-----------------KFLESYIPLNAIKYLEEGKVVIFAGGIGNP------FFTTDTTAALRAAEIK 571 (844)
Q Consensus 515 ~a~~l~~~~~~-----------------~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~------~~s~D~lAa~lA~~l~ 571 (844)
+++++++.+.. ..+..++.+.+..+++.|.|||++|. |.+ +.++|++|+++|..|+
T Consensus 93 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~-~~~~~g~~~~~~~D~~A~~lA~~l~ 171 (256)
T cd04238 93 KAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI-AVDEDGETYNVNADTAAGAIAAALK 171 (256)
T ss_pred CCCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCc-EECCCCcEEEECHHHHHHHHHHHcC
Confidence 99999998642 12345688999999999999999972 221 3459999999999999
Q ss_pred CcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCC-CEEEEecCCcchHHHH
Q psy3759 572 AEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRV 643 (844)
Q Consensus 572 Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~~~~i~~~ 643 (844)
||+|+++|||||||++ ++++|++++++|+.+ +|+|..|+.+|..+.+.|+ +++|++|..|++|.++
T Consensus 172 a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~ 245 (256)
T cd04238 172 AEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLE 245 (256)
T ss_pred CCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHH
Confidence 9999999999999987 267899999877654 5899999999998888876 5999999999999999
Q ss_pred HcC-CcccEEE
Q psy3759 644 IEG-KNEGTLV 653 (844)
Q Consensus 644 l~G-e~~GT~I 653 (844)
|.| +..||+|
T Consensus 246 l~~~~~~GT~i 256 (256)
T cd04238 246 LFTDEGIGTMI 256 (256)
T ss_pred HhcCCCCCCCC
Confidence 998 5689976
No 75
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.88 E-value=4.5e-22 Score=211.81 Aligned_cols=201 Identities=17% Similarity=0.185 Sum_probs=152.7
Q ss_pred hhhhhhhhhhhhhhh-CCCeEEEEeCchHHhhhcccccc-------C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy3759 446 SIIKNIISEISEIVS-CGIELAIVIGGGNICRGISNKIQ-------N---IDRSTADYMGMLATIINSLALFDILNKSGI 514 (844)
Q Consensus 446 ~~i~~~a~~I~~l~~-~G~~vVIVhGGG~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 514 (844)
+.+++++++|+.+.. .|.++|||||||.+...+..... + .+...++...+...+..+..+.+.+.++|+
T Consensus 14 ~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l~~~Gv 93 (252)
T cd04249 14 AALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQAIKAGL 93 (252)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHHHhCCC
Confidence 568889999998754 57899999999966443222211 1 244455555544445556666777779999
Q ss_pred ceeEeehhchhh--------------hhhccchHHHHHHHhCCCEEEEeCC----CC-CCCCcchHHHHHHHHHcCCcEE
Q psy3759 515 ISHVMSAISIEK--------------FLESYIPLNAIKYLEEGKVVIFAGG----IG-NPFFTTDTTAALRAAEIKAEII 575 (844)
Q Consensus 515 ~a~~l~~~~~~~--------------~~~~~~~~~l~~lL~~g~VPVv~G~----~G-~~~~s~D~lAa~lA~~l~Ad~L 575 (844)
+++++++.+.+. .+..++.+.+..+++.|+|||++|. .| ..++++|++|+++|..|+|| +
T Consensus 94 ~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~ 172 (252)
T cd04249 94 KPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-L 172 (252)
T ss_pred CceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-E
Confidence 999999886421 1345778999999999999999972 11 12466999999999999999 6
Q ss_pred EEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHH-HhCCCCEEEEecCCcchHHHHHcCC
Q psy3759 576 LKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC-RDQKLPIRVFSIIKSGALKRVIEGK 647 (844)
Q Consensus 576 iilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a-~~~gi~v~I~~g~~~~~i~~~l~Ge 647 (844)
+++|||||||++|| ++|++++.+|+.+ +|||..++.++..+ ...+++++|++|..|+.+.+++.|+
T Consensus 173 i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~ 246 (252)
T cd04249 173 VLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGE 246 (252)
T ss_pred EEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCC
Confidence 78999999998765 4788888776644 58898898876665 4556899999999999999999999
Q ss_pred cccEEE
Q psy3759 648 NEGTLV 653 (844)
Q Consensus 648 ~~GT~I 653 (844)
.+||+|
T Consensus 247 ~~GT~I 252 (252)
T cd04249 247 PVGTKI 252 (252)
T ss_pred CCCcCC
Confidence 999986
No 76
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.87 E-value=1.8e-21 Score=210.00 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=126.3
Q ss_pred HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhhh----------------hccchHHHHHHHhC-CCEEEEeCCCC
Q psy3759 493 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKFL----------------ESYIPLNAIKYLEE-GKVVIFAGGIG 553 (844)
Q Consensus 493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~~----------------~~~~~~~l~~lL~~-g~VPVv~G~~G 553 (844)
..+++.| .++.+++.+|++.|+++..+.+.++.... .......+...+.. +.|||++||.|
T Consensus 112 d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig 191 (295)
T cd04259 112 AEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALLQKRLADGAQLIITQGFIA 191 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHHHHHHHHhcCCceeEeCCcee
Confidence 3444444 47889999999999999999887651110 11233456666655 67999999877
Q ss_pred CC--C-C------cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHH
Q psy3759 554 NP--F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSF 621 (844)
Q Consensus 554 ~~--~-~------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~ 621 (844)
.. + + .+|++|+.+|.+++||.+++||||||||++||+.+|++++|++++++|+.+ .|++++|+.|+.+
T Consensus 192 ~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~ 271 (295)
T cd04259 192 RNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPP 271 (295)
T ss_pred eCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHH
Confidence 43 1 1 299999999999999999999999999999999999999999999999877 7999999999999
Q ss_pred HHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 622 CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 622 a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
|.++|+|++|.|+++|+ ..||+|+
T Consensus 272 a~~~~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 272 ARRANIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred HHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence 99999999999999884 5799984
No 77
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.87 E-value=1.6e-21 Score=210.74 Aligned_cols=226 Identities=17% Similarity=0.159 Sum_probs=161.4
Q ss_pred hHHHHHHHhhhhhhhcCC-CCcc--cchhhhhhhhhhhhhhhCCCeEEEEeCchHHh---hhccccc---cCCCcchHHH
Q psy3759 422 SLAVLKAQQLGEALMKGD-AYNI--NSSIIKNIISEISEIVSCGIELAIVIGGGNIC---RGISNKI---QNIDRSTADY 492 (844)
Q Consensus 422 ~~iv~k~~~~~~~l~~g~-~~~i--d~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~---~~~~~~~---~~~~~~~~~~ 492 (844)
+++|+++ +|+++...+ ...+ ....+..++++|+.|...|+++|||||||... +...... .+++..+++.
T Consensus 3 k~iVI~l--GGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~ 80 (316)
T PRK12352 3 ELVVVAI--GGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLAN 80 (316)
T ss_pred cEEEEEE--ChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHH
Confidence 3567776 777765321 1111 23578999999999999999999999998322 2122222 2345566665
Q ss_pred HHHHHHHH----HHHHHHHHHHHcCCce-------eEeehhchhh-----------------------------------
Q psy3759 493 MGMLATII----NSLALFDILNKSGIIS-------HVMSAISIEK----------------------------------- 526 (844)
Q Consensus 493 ~~~~~~~~----~~~ll~~~L~~~gi~a-------~~l~~~~~~~----------------------------------- 526 (844)
+...+.+. .+..|+..|..+|..+ +.+++.|...
T Consensus 81 ~v~~~~g~i~~~i~~~L~~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G 160 (316)
T PRK12352 81 CVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRG 160 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCC
Confidence 55555543 4555666688777443 3445322100
Q ss_pred ---------hhhccchHHHHHHHhCCCEEEEeCCCCCC--------------CCcchHHHHHHHHHcCCcEEEEeecccc
Q psy3759 527 ---------FLESYIPLNAIKYLEEGKVVIFAGGIGNP--------------FFTTDTTAALRAAEIKAEIILKATKVDG 583 (844)
Q Consensus 527 ---------~~~~~~~~~l~~lL~~g~VPVv~G~~G~~--------------~~s~D~lAa~lA~~l~Ad~LiilTDVdG 583 (844)
.++.++.+.+..++++|+|||.+|+.|.| ++++|++|+.+|.+|+||+|+|+|||||
T Consensus 161 ~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~G 240 (316)
T PRK12352 161 YRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEK 240 (316)
T ss_pred eEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchh
Confidence 04456788999999999996666544443 1448999999999999999999999999
Q ss_pred cccCCCCCCCCceeecccCHHHHHh--------hccccchHHHHHHHHhCCC-CEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 584 IYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 584 Vyt~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
||+++|+ |++++|++++..++.+ .|+|.+|+.||..+.+.|+ +++|++ ++.+.++|.|+ .||+|.
T Consensus 241 V~~d~~~--~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~ 314 (316)
T PRK12352 241 VCIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHII 314 (316)
T ss_pred hccCCCC--CCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEE
Confidence 9988765 6788999999988755 3789999998866666665 688885 77799999998 899997
Q ss_pred e
Q psy3759 655 E 655 (844)
Q Consensus 655 ~ 655 (844)
.
T Consensus 315 ~ 315 (316)
T PRK12352 315 K 315 (316)
T ss_pred e
Confidence 4
No 78
>PRK09411 carbamate kinase; Reviewed
Probab=99.87 E-value=9.4e-22 Score=208.08 Aligned_cols=221 Identities=21% Similarity=0.225 Sum_probs=167.3
Q ss_pred HHHHHHhhhhhhhcCC-CCcccch--hhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccccccCCCcchHHHHHHH
Q psy3759 424 AVLKAQQLGEALMKGD-AYNINSS--IIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGML 496 (844)
Q Consensus 424 iv~k~~~~~~~l~~g~-~~~id~~--~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~ 496 (844)
+|+-+ +|.+++..+ +...... .++..|++|+.+.+. |++||+||.| +....... ....++.++|.+++.
T Consensus 4 iVvAl--GGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~-~~~~~~~pld~~~a~ 79 (297)
T PRK09411 4 LVVAL--GGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLA-WKEVEPYPLDVLVAE 79 (297)
T ss_pred EEEEc--CchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHh-hcCCCCCCchhhhhh
Confidence 44444 677776432 2333333 788899999999887 9999999996 44333222 223478899999999
Q ss_pred HHHHHHHHHHHHHHHcCCce--eE------eehhch---------h---------------------------------h
Q psy3759 497 ATIINSLALFDILNKSGIIS--HV------MSAISI---------E---------------------------------K 526 (844)
Q Consensus 497 ~~~~~~~ll~~~L~~~gi~a--~~------l~~~~~---------~---------------------------------~ 526 (844)
++|+.+++|+..|...++.. +. +++.|- + .
T Consensus 80 sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~ 159 (297)
T PRK09411 80 SQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQ 159 (297)
T ss_pred cccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCC
Confidence 99999999999998887543 11 111110 0 0
Q ss_pred hhhccchHHHHHHHhCCCEEEEeCCCCCC----------CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCce
Q psy3759 527 FLESYIPLNAIKYLEEGKVVIFAGGIGNP----------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAI 596 (844)
Q Consensus 527 ~~~~~~~~~l~~lL~~g~VPVv~G~~G~~----------~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~ 596 (844)
....++.+.+..++++|+|||.+|+.|.| ++++|.+|+.||..|+||+|+|+|||||||++++ .|+++
T Consensus 160 P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~ 237 (297)
T PRK09411 160 PRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQR 237 (297)
T ss_pred CcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCc
Confidence 02346788999999999998888765544 2459999999999999999999999999999764 47889
Q ss_pred eecccCHHHHHh----hccccchHHHH-HHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 597 IYKKITFDEVIS----KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 597 ~I~~i~~~e~~~----~G~~v~~~~Aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
+|++++.+++.. .|+|.+|+.|+ +++.+.|.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 238 ~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 238 AIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred CCCCcCHHHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 999999988865 69999999987 66666677888754 66788999998 699985
No 79
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.87 E-value=2.4e-21 Score=222.44 Aligned_cols=313 Identities=18% Similarity=0.191 Sum_probs=205.5
Q ss_pred CcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhcccccc-CCCc----------------------------
Q psy3759 441 YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDR---------------------------- 487 (844)
Q Consensus 441 ~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~~~~---------------------------- 487 (844)
..-+.+.++++++.|......|+++|+|||++ +.......... .-..
T Consensus 11 sv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ 90 (441)
T TIGR00657 11 SVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIPQAIAEELKR 90 (441)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34567889999999998777899999999983 11111110000 0000
Q ss_pred ----------chHHHHHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhhh----------hhccchHHHHHHHhCCCE
Q psy3759 488 ----------STADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF----------LESYIPLNAIKYLEEGKV 545 (844)
Q Consensus 488 ----------~~~~~~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~~----------~~~~~~~~l~~lL~~g~V 545 (844)
.......+++.|+ ++.+++.+|+++|++++.+++.+.... ...++...+..+++.|.|
T Consensus 91 ~~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~v 170 (441)
T TIGR00657 91 LLDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGII 170 (441)
T ss_pred HHHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCE
Confidence 0112234445554 677899999999999999998875221 345677889999999999
Q ss_pred EEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hcccc
Q psy3759 546 VIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEI 613 (844)
Q Consensus 546 PVv~G~~G~~---~~------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v 613 (844)
||++|+.|.+ .. .+|++|+.+|.+|+||+|++||||||||++||+.+|+++++++++++|+.+ .|.++
T Consensus 171 pVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v 250 (441)
T TIGR00657 171 PVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKV 250 (441)
T ss_pred EEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcc
Confidence 9999975421 11 289999999999999999999999999999999999999999999999877 79999
Q ss_pred chHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEecch-h---hh------hhh--hhhHHHhHHHHHHHHHH
Q psy3759 614 MDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI-M---II------SDI--KKNTKQKMLNTIKILKE 681 (844)
Q Consensus 614 ~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~-m---~~------~~i--~~~~~~~m~~~v~~~~~ 681 (844)
+++.|+.+|.++++|++|.|++.|+ ..||+|.+... + .+ +.+ +.-....|.. ...+.+
T Consensus 251 ~~~~a~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~~~~~~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~ 320 (441)
T TIGR00657 251 LHPRTLEPAMRAKIPIVVKSTFNPE---------APGTLIVASTKEMEEPIVKGLSLDRNQARVTVSGLGMKG-PGFLAR 320 (441)
T ss_pred cCHHHHHHHHHcCCeEEEecCCCCC---------CCceEEEeCCCccccCccceEEEeCCEEEEEEECCCCCC-ccHHHH
Confidence 9999999999999999999998873 46999987521 1 01 111 0000111221 112222
Q ss_pred HHHhhhcCCCcccccc------eeEEEecccccc-----------cceeeeeeccCC-ceEEEe---cC-CcccHHHHHH
Q psy3759 682 NLKKVRTGRANIGMLD------NIQVKYHEHLTK-----------LLKIANITLFNS-HTISIQ---PF-EKEMSSIIKK 739 (844)
Q Consensus 682 ~l~~irtgr~~p~~ld------~i~V~~~g~~~~-----------l~~~A~i~~~~~-~~l~i~---~~-d~~~~~~i~k 739 (844)
=|..+..-..++.++. ++.+-....... ...+..|++.++ ..+.|. .+ .+.....|.+
T Consensus 321 if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~ 400 (441)
T TIGR00657 321 VFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKIFE 400 (441)
T ss_pred HHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchHHHHHH
Confidence 2233333334444442 233333222111 122344555433 233331 12 4788889999
Q ss_pred HHHhcCCCCcce-ecCCeeEEeCCC
Q psy3759 740 AINEANLGLNPT-IQGNIIYVSIPP 763 (844)
Q Consensus 740 Ai~~s~l~~~p~-~~~~~i~v~iP~ 763 (844)
++.+.++++.-. ..+..|.+.++.
T Consensus 401 ~La~~~Inv~~i~~se~~Is~vV~~ 425 (441)
T TIGR00657 401 ALAQNGINIEMISSSEINISFVVDE 425 (441)
T ss_pred HHHHCCCCEEEEEecCCcEEEEEeH
Confidence 998777776544 345677777764
No 80
>PRK12354 carbamate kinase; Reviewed
Probab=99.87 E-value=1.1e-21 Score=209.47 Aligned_cols=224 Identities=21% Similarity=0.182 Sum_probs=163.1
Q ss_pred HHHHHHhhhhhhhcC-CCCccc--chhhhhhhhhhhhhhhCCCeEEEEeCchHH-h--hhccccccCCCcchHHHHHHHH
Q psy3759 424 AVLKAQQLGEALMKG-DAYNIN--SSIIKNIISEISEIVSCGIELAIVIGGGNI-C--RGISNKIQNIDRSTADYMGMLA 497 (844)
Q Consensus 424 iv~k~~~~~~~l~~g-~~~~id--~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~-~--~~~~~~~~~~~~~~~~~~~~~~ 497 (844)
+|+.+ +|++++.. .+.... .+.++..|++|+++.+ |+++||+||+|.+ . +.........++.+++.+.+..
T Consensus 3 iVial--GGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~s 79 (307)
T PRK12354 3 IVVAL--GGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAET 79 (307)
T ss_pred EEEEe--ccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhcccc
Confidence 45555 67777653 334444 3488899999999988 9999999999854 2 1112222223678889999999
Q ss_pred HHHHHHHHHHHHHHcC----CceeE----eehhc---------hhh---------------------------------h
Q psy3759 498 TIINSLALFDILNKSG----IISHV----MSAIS---------IEK---------------------------------F 527 (844)
Q Consensus 498 ~~~~~~ll~~~L~~~g----i~a~~----l~~~~---------~~~---------------------------------~ 527 (844)
+++.++++++.|...= +..+. +...+ ++. .
T Consensus 80 qg~iGy~l~q~l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P 159 (307)
T PRK12354 80 EGMIGYMLEQELGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRP 159 (307)
T ss_pred cchHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCC
Confidence 9999999888854322 22211 11110 000 0
Q ss_pred hhccchHHHHHHHhCCCEEEEeCCCCCCC--------------CcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCC
Q psy3759 528 LESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL 593 (844)
Q Consensus 528 ~~~~~~~~l~~lL~~g~VPVv~G~~G~~~--------------~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~ 593 (844)
...++.+.+..++++|+|||.+|+.|.|. +++|++|++||.+++||+|+|+|||||||++++ .|
T Consensus 160 ~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p 237 (307)
T PRK12354 160 KRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KP 237 (307)
T ss_pred cceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CC
Confidence 11256889999999999988887766551 237999999999999999999999999999865 37
Q ss_pred CceeecccCHHHHHh----hccccchHHHHHH-HHhCCCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 594 SAIIYKKITFDEVIS----KKLEIMDSTAFSF-CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 594 ~a~~I~~i~~~e~~~----~G~~v~~~~Aa~~-a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
++++|++++.+++.+ .|+|.+|+.|+.. +.+.+.+++|. .++.+.++|.|+ .||+|.+.
T Consensus 238 ~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 238 TQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPE 301 (307)
T ss_pred CCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecC
Confidence 899999999988876 6899999998854 45556567774 356789999997 79999874
No 81
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.87 E-value=5.1e-21 Score=205.34 Aligned_cols=152 Identities=19% Similarity=0.228 Sum_probs=130.8
Q ss_pred HHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCCC------
Q psy3759 494 GMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF------ 556 (844)
Q Consensus 494 ~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~------ 556 (844)
.+++.| .++.+|+.+|+..|+++..+++.+++.. +.....+.+.+.++.+.|||++||.|.+.
T Consensus 114 ~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~tt 193 (288)
T cd04245 114 ALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKT 193 (288)
T ss_pred HHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEEE
Confidence 444444 4788999999999999999998876322 11225677888888899999999988641
Q ss_pred ---CcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEE
Q psy3759 557 ---FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIR 630 (844)
Q Consensus 557 ---~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~ 630 (844)
-++|++|+.+|.+|+||.+.+|||||||||+||+.+|+|+.+++++++|+.+ .|..++++.|+.+|+++++|++
T Consensus 194 LgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~ 273 (288)
T cd04245 194 FSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPIN 273 (288)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEE
Confidence 2399999999999999999999999999999999999999999999999988 7999999999999999999999
Q ss_pred EEecCCcchHHHHHcCCcccEEEE
Q psy3759 631 VFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 631 I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
|.|.++|+ ..||+|+
T Consensus 274 v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 274 IKNTNHPE---------APGTLIV 288 (288)
T ss_pred EeeCCCCC---------CCCceeC
Confidence 99999885 4699984
No 82
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.86 E-value=6.8e-21 Score=205.57 Aligned_cols=153 Identities=22% Similarity=0.312 Sum_probs=126.4
Q ss_pred HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchh----hh-----hhccchHHHHHHHhC-CCEEEEeCCCCCC--CCc
Q psy3759 493 MGMLATI--INSLALFDILNKSGIISHVMSAISIE----KF-----LESYIPLNAIKYLEE-GKVVIFAGGIGNP--FFT 558 (844)
Q Consensus 493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~----~~-----~~~~~~~~l~~lL~~-g~VPVv~G~~G~~--~~s 558 (844)
..+++.| .++.+|+.+|++.|+++..+++.++- .. ........+..++.. +.|||++||.|.. +.+
T Consensus 118 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ 197 (294)
T cd04257 118 AKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGET 197 (294)
T ss_pred hhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCE
Confidence 3444444 47889999999999999999887641 00 111224566666665 8999999987732 211
Q ss_pred -------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759 559 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 628 (844)
Q Consensus 559 -------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 628 (844)
+|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+ .|.++.++.|+.+|.++|+|
T Consensus 198 ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ip 277 (294)
T cd04257 198 TTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIP 277 (294)
T ss_pred EECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCC
Confidence 79999999999999999999999999999999999999999999999887 79999999999999999999
Q ss_pred EEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 629 IRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 629 v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
++|.|+++|+ ..||+|+
T Consensus 278 i~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 278 ILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred EEEeeCCCCC---------CCCCEeC
Confidence 9999999884 5799984
No 83
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.86 E-value=1.1e-21 Score=207.62 Aligned_cols=203 Identities=21% Similarity=0.262 Sum_probs=148.4
Q ss_pred HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCC----------CcchHHH
Q psy3759 423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI----------DRSTADY 492 (844)
Q Consensus 423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~----------~~~~~~~ 492 (844)
++|+|+ +|+++. +.+ .. +.+++++|+.+.+.|+++|||||||.+...+.....-. +......
T Consensus 2 ~~ViK~--GGs~l~-~~~----~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 73 (242)
T PF00696_consen 2 TIVIKL--GGSSLT-DKD----EE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKFVDGSRVTDIETGLI 73 (242)
T ss_dssp EEEEEE---HHGHS-SHS----HH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSEETHHCHBHHHHHHH
T ss_pred eEEEEE--CchhhC-Cch----HH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcccchhhhhhhhhhhHH
Confidence 356675 555543 222 34 89999999999999999999999997666555442100 1111222
Q ss_pred HHHHHHHHHHH-----HHHHHHHHcCCceeEeehhchhhhh-----hccchHHHHHHHhCCCEEEEeCCCC-----C---
Q psy3759 493 MGMLATIINSL-----ALFDILNKSGIISHVMSAISIEKFL-----ESYIPLNAIKYLEEGKVVIFAGGIG-----N--- 554 (844)
Q Consensus 493 ~~~~~~~~~~~-----ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~~~~~l~~lL~~g~VPVv~G~~G-----~--- 554 (844)
....+....+. .+.+.+..++..++.+.+.+.+... ..++...+..+|++|.|||++|+.+ .
T Consensus 74 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~ 153 (242)
T PF00696_consen 74 ITMAAAAELNRDALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTT 153 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEE
T ss_pred HHHHHhhccccchhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCccc
Confidence 22332222233 5666788889888877766643221 2467889999999999999998542 1
Q ss_pred -CCCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh--------hccccchH-HHHHHHHh
Q psy3759 555 -PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDS-TAFSFCRD 624 (844)
Q Consensus 555 -~~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~-~Aa~~a~~ 624 (844)
.+.++|++|+.+|.+|+|+.|+++|||||||++||+.+|++++|++++++|+.+ .|||..+. .|.+.+.+
T Consensus 154 ~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~ 233 (242)
T PF00696_consen 154 LGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEE 233 (242)
T ss_dssp EEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Confidence 245699999999999999999999999999999999999999999999999876 46666655 56677777
Q ss_pred CCCCEEEEe
Q psy3759 625 QKLPIRVFS 633 (844)
Q Consensus 625 ~gi~v~I~~ 633 (844)
++++++|+|
T Consensus 234 ~~~~v~I~n 242 (242)
T PF00696_consen 234 GGIPVHIIN 242 (242)
T ss_dssp TTSEEEEEE
T ss_pred CCCcEEEeC
Confidence 789999986
No 84
>PRK08373 aspartate kinase; Validated
Probab=99.86 E-value=6.1e-21 Score=208.69 Aligned_cols=156 Identities=24% Similarity=0.313 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh----h--------hhccchHHHHHHHhCCCEEEEeCCCCCC-C
Q psy3759 490 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEK----F--------LESYIPLNAIKYLEEGKVVIFAGGIGNP-F 556 (844)
Q Consensus 490 ~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----~--------~~~~~~~~l~~lL~~g~VPVv~G~~G~~-~ 556 (844)
.|.........++.+++.+|+.+|+++..++++++-. . ....+.+.+..+++.|.|||++|+.|+. +
T Consensus 102 ~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G 181 (341)
T PRK08373 102 RDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNG 181 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCC
Confidence 3444444444578889999999999999999876511 0 1123457788889999999999988743 2
Q ss_pred -C------cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCC
Q psy3759 557 -F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQK 626 (844)
Q Consensus 557 -~------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~g 626 (844)
. ++|++|+.+|.+|+||.++++|||||||++||+.+|+|++|++++++|+.+ .|+.++++.|.++|.+ +
T Consensus 182 ~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~ 260 (341)
T PRK08373 182 FRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-K 260 (341)
T ss_pred eEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-C
Confidence 1 279999999999999999999999999999999999999999999999987 7999999999999999 9
Q ss_pred CCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 627 LPIRVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 627 i~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
+|++|.|.++| ..||+|++.
T Consensus 261 Ipi~v~~t~~~----------~~GT~I~~~ 280 (341)
T PRK08373 261 IPIIFGRTRDW----------RMGTLVSNE 280 (341)
T ss_pred CcEEEecCCCC----------CCCcEEecC
Confidence 99999998765 259999764
No 85
>PRK06291 aspartate kinase; Provisional
Probab=99.86 E-value=1.1e-20 Score=217.84 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hh----ccchHHHHHHHhCCCEEEEeCCCCCC--
Q psy3759 491 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LE----SYIPLNAIKYLEEGKVVIFAGGIGNP-- 555 (844)
Q Consensus 491 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~----~~~~~~l~~lL~~g~VPVv~G~~G~~-- 555 (844)
|.....+...++.+|+.+|+++|+++..+++.+.+.+ +. ......+..+++.|.|||++|+.|..
T Consensus 123 d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~ 202 (465)
T PRK06291 123 DYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEE 202 (465)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCC
Confidence 3333333344788999999999999999998875211 00 11123566778899999999975522
Q ss_pred -C---C---cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhC
Q psy3759 556 -F---F---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ 625 (844)
Q Consensus 556 -~---~---s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~ 625 (844)
. . .+|++|+.+|.+|+||.+++||||||||++||+.+|+++++++++++|+.+ .|++++|+.|+.+|.++
T Consensus 203 g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~ 282 (465)
T PRK06291 203 GIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEK 282 (465)
T ss_pred CCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHc
Confidence 1 2 389999999999999999999999999999999999999999999999887 69999999999999999
Q ss_pred CCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 626 KLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 626 gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
|+|++|.|+++|+ ..||+|.+.
T Consensus 283 ~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 283 GIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred CCcEEEecCCCCC---------CCceEEEec
Confidence 9999999999874 469999864
No 86
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.85 E-value=1.2e-20 Score=203.64 Aligned_cols=153 Identities=26% Similarity=0.333 Sum_probs=126.3
Q ss_pred HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhh----h---hhcc--chHHHHHHHhC-CCEEEEeCCCCCC--CCc
Q psy3759 493 MGMLATI--INSLALFDILNKSGIISHVMSAISIEK----F---LESY--IPLNAIKYLEE-GKVVIFAGGIGNP--FFT 558 (844)
Q Consensus 493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~----~---~~~~--~~~~l~~lL~~-g~VPVv~G~~G~~--~~s 558 (844)
..+++.| .++.+++.+|.+.|+++..+++.++-. . .... ....+..++.. +.|||++||.|.. +.+
T Consensus 117 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ 196 (293)
T cd04243 117 AEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGET 196 (293)
T ss_pred hHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCE
Confidence 3444444 478899999999999999998865410 0 0011 13467777776 8999999987632 222
Q ss_pred -------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759 559 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 628 (844)
Q Consensus 559 -------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 628 (844)
+|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+ .|..+.++.|+.+|.++|+|
T Consensus 197 ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~ 276 (293)
T cd04243 197 TTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIP 276 (293)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCc
Confidence 79999999999999999999999999999999999999999999999887 79999999999999999999
Q ss_pred EEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 629 IRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 629 v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
++|.|+++|+ ..||+|+
T Consensus 277 i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 277 IFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred EEEecCCCCC---------CCCCEeC
Confidence 9999999884 5799984
No 87
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.84 E-value=5.5e-21 Score=200.95 Aligned_cols=178 Identities=21% Similarity=0.208 Sum_probs=140.0
Q ss_pred hhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc-------C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy3759 448 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ-------N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 517 (844)
Q Consensus 448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 517 (844)
+.+++++|+.++..|.++|||||||.+......... + .++.+++.......+..+..+.+.|.++|++++
T Consensus 15 ~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~~~L~~~G~~a~ 94 (231)
T TIGR00761 15 LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELVALLNKHGINAI 94 (231)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHHHHHHhCCCCcc
Confidence 889999999999999999999999855443222211 1 234445555555565666777889999999999
Q ss_pred Eeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeCCCCCC------CCcchHHHHHHHHHcCCcEEE
Q psy3759 518 VMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FFTTDTTAALRAAEIKAEIIL 576 (844)
Q Consensus 518 ~l~~~~~~~~---------------~~~~~~~~l~~lL~~g~VPVv~G~~G~~------~~s~D~lAa~lA~~l~Ad~Li 576 (844)
++++.+.+.+ +..++.+.+..++++|+|||++|. |.+ ++++|++|+.+|.+|+||+|+
T Consensus 95 ~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~-~~~~~g~~~~l~sD~~A~~lA~~l~A~~li 173 (231)
T TIGR00761 95 GLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL-ALTAEGQALNVNADTAAGALAAALGAEKLV 173 (231)
T ss_pred cccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCC-ccCCCCcEEEeCHHHHHHHHHHHcCCCEEE
Confidence 9988764211 345678999999999999999982 322 356999999999999999999
Q ss_pred EeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCCCEEE
Q psy3759 577 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRV 631 (844)
Q Consensus 577 ilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I 631 (844)
|+|||||||++||+ ++|++++.+|+.+ +|+|..|+.++..|.+.|++.+.
T Consensus 174 ~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~ 230 (231)
T TIGR00761 174 LLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVH 230 (231)
T ss_pred EEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEE
Confidence 99999999999874 6889998877655 59999999999999999997543
No 88
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.84 E-value=1.4e-20 Score=193.16 Aligned_cols=180 Identities=21% Similarity=0.260 Sum_probs=142.1
Q ss_pred hhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccc--ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchh
Q psy3759 448 IKNIISEISEIVSCGIELAIVIGGGNICRGISNK--IQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIE 525 (844)
Q Consensus 448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~ 525 (844)
+..+.+.+..+. |++++||.|||++++.+... ..++++..+|+++++++.+++++|+..+...+
T Consensus 12 ~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~------------ 77 (203)
T cd04240 12 AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLV------------ 77 (203)
T ss_pred HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCccc------------
Confidence 344555555442 88999999999985544332 44789999999999999999998764332221
Q ss_pred hhhhccchHHHHHHHhCCCEEEEeCC--------CCCC-CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCce
Q psy3759 526 KFLESYIPLNAIKYLEEGKVVIFAGG--------IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAI 596 (844)
Q Consensus 526 ~~~~~~~~~~l~~lL~~g~VPVv~G~--------~G~~-~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~ 596 (844)
..+...+...+..|.+||+.+. .+.. ++|+|++|+++|..++|++|+++|||||||++| ++
T Consensus 78 ----~~~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~ 147 (203)
T cd04240 78 ----ARTLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GK 147 (203)
T ss_pred ----cCCHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------Cc
Confidence 1234567778999999999884 1111 478999999999999999999999999999864 78
Q ss_pred eecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCC-cccEEE
Q psy3759 597 IYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLV 653 (844)
Q Consensus 597 ~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge-~~GT~I 653 (844)
++++++..++.. ...++..+++++.++|++++|+||..|+++.+++.|+ .+||+|
T Consensus 148 ~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 148 LVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred CccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 999999887643 4455777888899999999999999999999999998 789975
No 89
>PLN02551 aspartokinase
Probab=99.84 E-value=1.8e-19 Score=207.97 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=127.9
Q ss_pred HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHH-----hCCCEEEEeCCCCCC-
Q psy3759 493 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYL-----EEGKVVIFAGGIGNP- 555 (844)
Q Consensus 493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL-----~~g~VPVv~G~~G~~- 555 (844)
..+++.| .++.+|+.+|++.|+++..+++.+++.+ +.......+...+ ..+.|||++||.|..
T Consensus 166 d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~ 245 (521)
T PLN02551 166 DYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGW 245 (521)
T ss_pred HHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCC
Confidence 4444444 4788999999999999999998876321 1122233343333 356899999998853
Q ss_pred --C-Cc------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHH
Q psy3759 556 --F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR 623 (844)
Q Consensus 556 --~-~s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~ 623 (844)
+ ++ +|++|+.+|.+|+|+.+.|||||||||++||+..|+|+++++++|+|+.+ +|..+++|.|..+|+
T Consensus 246 ~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~ 325 (521)
T PLN02551 246 KTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAR 325 (521)
T ss_pred CCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHH
Confidence 2 22 99999999999999999999999999999999999999999999999988 799999999999999
Q ss_pred hCCCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 624 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 624 ~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
+++||++|.|.++|+ ..||+|++.
T Consensus 326 ~~~Ipi~vknt~~p~---------~~GT~I~~~ 349 (521)
T PLN02551 326 EGDIPVRVKNSYNPT---------APGTLITKT 349 (521)
T ss_pred HCCceEEEEecCCCC---------CCCcEEecc
Confidence 999999999998873 579999865
No 90
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.84 E-value=3.9e-20 Score=198.86 Aligned_cols=157 Identities=26% Similarity=0.334 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchh----hh-hhcc----chH---HHHHHHhCCCEEEEeCCCCCC-
Q psy3759 489 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIE----KF-LESY----IPL---NAIKYLEEGKVVIFAGGIGNP- 555 (844)
Q Consensus 489 ~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~----~~-~~~~----~~~---~l~~lL~~g~VPVv~G~~G~~- 555 (844)
..|.+...+...++.+|+.+|+..|+++..+++.++- .. ...+ ... .....+..+.|||++||.|.+
T Consensus 112 ~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~ 191 (292)
T cd04258 112 SRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTE 191 (292)
T ss_pred hHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccCC
Confidence 3455555555568999999999999999999887651 00 0011 111 222224567999999998854
Q ss_pred -C-Cc------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHh
Q psy3759 556 -F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRD 624 (844)
Q Consensus 556 -~-~s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~ 624 (844)
+ ++ +|++|+++|..++|+.+++||||||||++||+.+|+|+++++++++|+.+ .|..++++.|..++.+
T Consensus 192 ~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~ 271 (292)
T cd04258 192 KGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIR 271 (292)
T ss_pred CCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHH
Confidence 2 22 79999999999999999999999999999999999999999999999988 7999999999999999
Q ss_pred CCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 625 QKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 625 ~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
+++|++|.|.++|+ ..||+|+
T Consensus 272 ~~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 272 KNIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred cCCcEEEEeCCCCC---------CCCceeC
Confidence 99999999999874 5799984
No 91
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.83 E-value=2.5e-20 Score=200.61 Aligned_cols=214 Identities=18% Similarity=0.168 Sum_probs=160.7
Q ss_pred hHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccc---ccc----C---CCcchHH
Q psy3759 422 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTAD 491 (844)
Q Consensus 422 ~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~ 491 (844)
+++|+|+ +|+++.. +.++.++++|+.|.+.|+++|||||||.....+.. ... + .++.+++
T Consensus 19 ~~~VIKl--GG~ai~~--------~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~ 88 (280)
T cd04237 19 KTFVIAF--GGEAVAH--------PNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALE 88 (280)
T ss_pred CEEEEEE--ChHHhcC--------chHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHH
Confidence 4678886 5554431 24578999999999999999999999954443222 111 1 2566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeeh-----hch------------------hhhhhccchHHHHHHHhCCCEEEE
Q psy3759 492 YMGMLATIINSLALFDILNKSGIISHVMSA-----ISI------------------EKFLESYIPLNAIKYLEEGKVVIF 548 (844)
Q Consensus 492 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~-----~~~------------------~~~~~~~~~~~l~~lL~~g~VPVv 548 (844)
...++ .+..+..+.+.|+. |++++++++ .+. ...+..++.+.+..+|++|++||+
T Consensus 89 ~~~~~-~g~v~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~ 166 (280)
T cd04237 89 CVKEA-AGAVRLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL 166 (280)
T ss_pred HHHHH-HHHHHHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEE
Confidence 76666 47778888888855 877764432 111 001345788999999999999999
Q ss_pred eCCC----CCC-CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh--------hccccch
Q psy3759 549 AGGI----GNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMD 615 (844)
Q Consensus 549 ~G~~----G~~-~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~ 615 (844)
++.. |.. ++++|.+|+.||.+|+||+|+|+|||||||++ ++++|++++.+++.+ +|+|.+|
T Consensus 167 ~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~K 240 (280)
T cd04237 167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL 240 (280)
T ss_pred CCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHH
Confidence 8732 111 46899999999999999999999999999974 256888998766654 4899999
Q ss_pred HHHHHHHHhCCC-CEEEEecCCcchHHHHHcC-CcccEEE
Q psy3759 616 STAFSFCRDQKL-PIRVFSIIKSGALKRVIEG-KNEGTLV 653 (844)
Q Consensus 616 ~~Aa~~a~~~gi-~v~I~~g~~~~~i~~~l~G-e~~GT~I 653 (844)
++++..+.+.|+ +++|+++..|+.+...+.+ +..||.|
T Consensus 241 v~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 999999999999 7999999999998877664 4679975
No 92
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.83 E-value=8.9e-20 Score=196.94 Aligned_cols=154 Identities=23% Similarity=0.321 Sum_probs=123.9
Q ss_pred HHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh-------hhccc---hHHHHHHH-h-CCCEEEEeCCCCCCC---
Q psy3759 494 GMLATI--INSLALFDILNKSGIISHVMSAISIEKF-------LESYI---PLNAIKYL-E-EGKVVIFAGGIGNPF--- 556 (844)
Q Consensus 494 ~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~-------~~~~~---~~~l~~lL-~-~g~VPVv~G~~G~~~--- 556 (844)
.+++.| .++.+++.+|++.|+++..+++.++-.. ...+. .+.+...+ . .+.|||++||.|...
T Consensus 127 ~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~ 206 (306)
T cd04247 127 LVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGGL 206 (306)
T ss_pred HHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCCC
Confidence 344444 4788899999999999999988765110 00111 11122222 2 578999999987432
Q ss_pred Cc------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCC
Q psy3759 557 FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL 627 (844)
Q Consensus 557 ~s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi 627 (844)
.+ +|++|+++|..|+|+++++|||||||||+||+.+|+|++|++++++|+.+ .|+++.|+.++.+|.+++|
T Consensus 207 ~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~I 286 (306)
T cd04247 207 LSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARI 286 (306)
T ss_pred eEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcCC
Confidence 22 99999999999999999999999999999999999999999999999987 7999999999999999999
Q ss_pred CEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 628 PIRVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 628 ~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
|++|.|.++|+ ..||+|+|+
T Consensus 287 pi~i~nt~~P~---------~~GT~I~~~ 306 (306)
T cd04247 287 PIRIKNVENPR---------GEGTVIYPD 306 (306)
T ss_pred cEEEecCCCCC---------CCCcEEcCC
Confidence 99999999884 579999873
No 93
>PRK09034 aspartate kinase; Reviewed
Probab=99.83 E-value=1e-19 Score=208.81 Aligned_cols=262 Identities=18% Similarity=0.177 Sum_probs=177.2
Q ss_pred HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC--C-Cc
Q psy3759 493 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP--F-FT 558 (844)
Q Consensus 493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~--~-~s 558 (844)
..+++.| .++.+|+.+|++.|+++..+++.+++.+ +.......+...+..+.|||++||.|.. + ++
T Consensus 113 d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~t 192 (454)
T PRK09034 113 DAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQIV 192 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCEE
Confidence 3444555 4788999999999999999998876322 1122345666666678899999998742 1 11
Q ss_pred ------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCE
Q psy3759 559 ------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI 629 (844)
Q Consensus 559 ------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v 629 (844)
+|++|+.+|.+|+||.+.+||||||||++||+..|+|+++++++++|+.+ .|..++++.|..+|.++++|+
T Consensus 193 tlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi 272 (454)
T PRK09034 193 TFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPI 272 (454)
T ss_pred ecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999988 799999999999999999999
Q ss_pred EEEecCCcchHHHHHcCCcccEEEEecch----hhh------hhh-hhhHHH-hHHHHHHHHHHHHHhhhcCCCcccccc
Q psy3759 630 RVFSIIKSGALKRVIEGKNEGTLVYEIYI----MII------SDI-KKNTKQ-KMLNTIKILKENLKKVRTGRANIGMLD 697 (844)
Q Consensus 630 ~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~----m~~------~~i-~~~~~~-~m~~~v~~~~~~l~~irtgr~~p~~ld 697 (844)
+|.|.++|+ ..||+|++... ..+ +.+ +-.+.. .|......+.+=|..+.....++.++.
T Consensus 273 ~v~~~~~p~---------~~GT~I~~~~~~~~~~~Vk~It~~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ 343 (454)
T PRK09034 273 NIKNTNNPE---------DPGTLIVPDRDNKNKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP 343 (454)
T ss_pred EEEcCCCCC---------CCccEEEeccccCccccceEEEecCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc
Confidence 999998873 46999986521 111 111 001111 133333444444444455566666663
Q ss_pred e----eEEEecccccc-------cce------eeeeeccCC-ceEEEe---c-CCcccHHHHHHHHHhcCCCCccee---
Q psy3759 698 N----IQVKYHEHLTK-------LLK------IANITLFNS-HTISIQ---P-FEKEMSSIIKKAINEANLGLNPTI--- 752 (844)
Q Consensus 698 ~----i~V~~~g~~~~-------l~~------~A~i~~~~~-~~l~i~---~-~d~~~~~~i~kAi~~s~l~~~p~~--- 752 (844)
. +.+-....... +.+ ...|++.+. ..+.|. . -++.....+..++.+.++++.-..
T Consensus 344 ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 344 SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3 44433322110 111 133444332 333331 1 246788888898887776664332
Q ss_pred cCCeeEEeCCC
Q psy3759 753 QGNIIYVSIPP 763 (844)
Q Consensus 753 ~~~~i~v~iP~ 763 (844)
.+..|.+.+|.
T Consensus 424 Se~~Is~vV~~ 434 (454)
T PRK09034 424 SEISIMFGVKN 434 (454)
T ss_pred CcceEEEEEcH
Confidence 33567777765
No 94
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.83 E-value=6.3e-20 Score=188.48 Aligned_cols=224 Identities=23% Similarity=0.282 Sum_probs=170.7
Q ss_pred HHHHHHhhhhhhhcCCC---CcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccc--cccCCCcchHHHHH
Q psy3759 424 AVLKAQQLGEALMKGDA---YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISN--KIQNIDRSTADYMG 494 (844)
Q Consensus 424 iv~k~~~~~~~l~~g~~---~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~--~~~~~~~~~~~~~~ 494 (844)
+|+-+ +|.+++.+++ .....+.++..+++|+.+...|+++||.||.| ...+.... ...+.++.++|.++
T Consensus 3 iVvAL--GGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~ 80 (312)
T COG0549 3 IVVAL--GGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLV 80 (312)
T ss_pred EEEEe--cchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHh
Confidence 34444 6777776543 23345678899999999999999999999996 44333222 12356778999999
Q ss_pred HHHHHHHHHHHHHH----HHHcCCc--e-eEee-----hhch--------------------------------------
Q psy3759 495 MLATIINSLALFDI----LNKSGII--S-HVMS-----AISI-------------------------------------- 524 (844)
Q Consensus 495 ~~~~~~~~~ll~~~----L~~~gi~--a-~~l~-----~~~~-------------------------------------- 524 (844)
++++++.+++|... |..+|++ . ..++ ..|-
T Consensus 81 AmsQG~IGy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~R 160 (312)
T COG0549 81 AMSQGMIGYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYR 160 (312)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCee
Confidence 99999999999888 4455642 1 1111 1110
Q ss_pred -----hhhhhccchHHHHHHHhCCCEEEEeCCCCCCCC-------------cchHHHHHHHHHcCCcEEEEeeccccccc
Q psy3759 525 -----EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFF-------------TTDTTAALRAAEIKAEIILKATKVDGIYN 586 (844)
Q Consensus 525 -----~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~-------------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt 586 (844)
+.....+..+.++.++++|.++|.+|+.|.|.+ ..|..|++||..++||.|+||||||+||-
T Consensus 161 RVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~ 240 (312)
T COG0549 161 RVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYV 240 (312)
T ss_pred EecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchhee
Confidence 000223466789999999999999998887732 28999999999999999999999999999
Q ss_pred CCCCCCCCceeecccCHHHHHh--------hccccchHHH-HHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759 587 SDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTA-FSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 587 ~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~A-a~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 655 (844)
...+ |+.+.|++++.+|+.+ -|+|.+|++| +.++.+.|-+++|.+ .+++.++|.|+ .||.|++
T Consensus 241 n~gk--p~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 241 NFGK--PNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred cCCC--ccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 9987 7889999999999765 5899999975 578888788888875 56688999997 6999974
No 95
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.83 E-value=6e-20 Score=199.80 Aligned_cols=142 Identities=20% Similarity=0.248 Sum_probs=116.7
Q ss_pred HHHHHHHcCCceeEeehhchhhh------------hhccchHHHHHHHhCCCEEEEeCCCCCCC--C------cchHHHH
Q psy3759 505 LFDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNPF--F------TTDTTAA 564 (844)
Q Consensus 505 l~~~L~~~gi~a~~l~~~~~~~~------------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~--~------s~D~lAa 564 (844)
+++.|-..|+++..++++++-.. ....+.+.+..+++.|.|||++|+.|+.. . ++|++|+
T Consensus 107 lSa~Lla~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa 186 (327)
T TIGR02078 107 LSAVIFAEGINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAV 186 (327)
T ss_pred HHHHHHHccCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHH
Confidence 44444445889988887765110 11234567778899999999999877432 1 3899999
Q ss_pred HHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHH
Q psy3759 565 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK 641 (844)
Q Consensus 565 ~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~ 641 (844)
.+|.+|+||.++++|||||||++||+.+|+|++|++++++|+.+ .|+.++|+.|+++|.++|+|++|.|.++|+
T Consensus 187 ~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~--- 263 (327)
T TIGR02078 187 ALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR--- 263 (327)
T ss_pred HHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC---
Confidence 99999999999999999999999999999999999999999876 677789999999999999999999998752
Q ss_pred HHHcCCcccEEEEec
Q psy3759 642 RVIEGKNEGTLVYEI 656 (844)
Q Consensus 642 ~~l~Ge~~GT~I~~~ 656 (844)
.||+|+..
T Consensus 264 -------~GT~I~~~ 271 (327)
T TIGR02078 264 -------MGTLISNR 271 (327)
T ss_pred -------CCcEEecC
Confidence 59999864
No 96
>PRK09084 aspartate kinase III; Validated
Probab=99.83 E-value=1.2e-19 Score=207.70 Aligned_cols=156 Identities=22% Similarity=0.279 Sum_probs=127.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhh----h---------hhccchHHHHHHHhCCCEEEEeCCCCCC
Q psy3759 491 DYMGMLATII--NSLALFDILNKSGIISHVMSAISIEK----F---------LESYIPLNAIKYLEEGKVVIFAGGIGNP 555 (844)
Q Consensus 491 ~~~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~----~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~ 555 (844)
....+++.|+ ++.+++.+|++.|+++..+++.++-. + ........+..+++.+ |||++||.|..
T Consensus 108 ~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~ 186 (448)
T PRK09084 108 LTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSD 186 (448)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecC
Confidence 3455555554 78899999999999999998866510 0 0001113445556778 99999987742
Q ss_pred --C-C------cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHH
Q psy3759 556 --F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR 623 (844)
Q Consensus 556 --~-~------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~ 623 (844)
+ . .+|++|+++|..++||.+++|||||||||+||+.+|+|+++++++++|+.+ .|+.+.++.+..+|.
T Consensus 187 ~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~ 266 (448)
T PRK09084 187 EKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAV 266 (448)
T ss_pred CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHH
Confidence 1 1 289999999999999999999999999999999999999999999999987 799999999999999
Q ss_pred hCCCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 624 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 624 ~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
++++|++|.|+.+|+ ..||+|.+.
T Consensus 267 ~~~i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 267 RSNIPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred HcCCcEEEEeCCCCC---------CCceEEecC
Confidence 999999999998874 469999754
No 97
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.82 E-value=6.2e-20 Score=210.98 Aligned_cols=217 Identities=18% Similarity=0.164 Sum_probs=164.1
Q ss_pred hHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccc---cc----C---CCcchHH
Q psy3759 422 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ----N---IDRSTAD 491 (844)
Q Consensus 422 ~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~----~---~~~~~~~ 491 (844)
+++|+|+ +|+++. + +.++.++.+|+.|...|.++|||||||.....+... .. + .++.+++
T Consensus 26 ~~~VIk~--GG~~l~-------~-~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~ 95 (441)
T PRK05279 26 KTFVIML--GGEAIA-------H-GNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALE 95 (441)
T ss_pred CEEEEEE--Cchhcc-------C-hhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHH
Confidence 4677776 454432 1 135789999999999999999999999444332221 11 1 2566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhch-----h------------------hhhhccchHHHHHHHhCCCEEEE
Q psy3759 492 YMGMLATIINSLALFDILNKSGIISHVMSAISI-----E------------------KFLESYIPLNAIKYLEEGKVVIF 548 (844)
Q Consensus 492 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~-----~------------------~~~~~~~~~~l~~lL~~g~VPVv 548 (844)
...++ .+..+..+.+.|+. |++++++++.++ . ..+..++.+.+..++++|+|||+
T Consensus 96 ~~~~~-~g~v~~~l~~~l~~-g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~ 173 (441)
T PRK05279 96 CVKQA-AGELRLDIEARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLL 173 (441)
T ss_pred HHHHH-HHHHHHHHHHHHhc-cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEE
Confidence 77777 46788888888855 888766543221 0 01345678999999999999999
Q ss_pred eCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh----------hcccc
Q psy3759 549 AGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEI 613 (844)
Q Consensus 549 ~G~----~G~-~~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~----------~G~~v 613 (844)
++. .|. -++++|++|+.||..|+||+|+|+|||||||++ ++++|++++.+++.+ +|||.
T Consensus 174 ~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~ 247 (441)
T PRK05279 174 SPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA 247 (441)
T ss_pred CCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence 872 122 246899999999999999999999999999953 356888888766533 49999
Q ss_pred chHHHHHHHHhCCC-CEEEEecCCcchHHHHHcCC-cccEEEEec
Q psy3759 614 MDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGK-NEGTLVYEI 656 (844)
Q Consensus 614 ~~~~Aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge-~~GT~I~~~ 656 (844)
+|+.++..+.+.|+ +++|++|..|+++...|.++ ..||.|+++
T Consensus 248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME 292 (441)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence 99999988888899 69999999999999988765 479999987
No 98
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.81 E-value=3.3e-19 Score=189.02 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=148.5
Q ss_pred hhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc---c----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy3759 448 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 517 (844)
Q Consensus 448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 517 (844)
+.+++++|+.|...|.++|||||||.+........ . + .++..++...++.. ..+..+.+.|.++|++++
T Consensus 14 l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~-~vn~~iv~~l~~~g~~a~ 92 (248)
T cd04252 14 LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFL-EENLKLVEALERNGARAR 92 (248)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcc
Confidence 68899999999988999999999996665544332 1 1 25566677766654 677788888999999999
Q ss_pred Eeehhchh------------hhhhccchHHHHHHHhCCCEEEEeCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeec
Q psy3759 518 VMSAISIE------------KFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATK 580 (844)
Q Consensus 518 ~l~~~~~~------------~~~~~~~~~~l~~lL~~g~VPVv~G~----~G~-~~~s~D~lAa~lA~~l~Ad~LiilTD 580 (844)
++++..+. ..+..++.+.+..+|+.|+|||++|. .|. -++++|.+|+.+|..|+|++|+|+||
T Consensus 93 ~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd 172 (248)
T cd04252 93 PITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE 172 (248)
T ss_pred cccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence 88764221 11456789999999999999999981 221 25779999999999999999999999
Q ss_pred ccccccCCCCCCCCceeecccCHH-HH---Hh----hccccchHHHHHHHHhC--C-CCEEEEecCCcchHHHHHcCC-c
Q psy3759 581 VDGIYNSDPNKCLSAIIYKKITFD-EV---IS----KKLEIMDSTAFSFCRDQ--K-LPIRVFSIIKSGALKRVIEGK-N 648 (844)
Q Consensus 581 VdGVyt~dP~~~~~a~~I~~i~~~-e~---~~----~G~~v~~~~Aa~~a~~~--g-i~v~I~~g~~~~~i~~~l~Ge-~ 648 (844)
|||||+++ .++|++++.. +. .+ +|||..|+.++..+.+. + ..++|++ ++.+...|.+. .
T Consensus 173 v~GV~~~~------g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g 243 (248)
T cd04252 173 TGGLLDGT------GKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSG 243 (248)
T ss_pred CcccCCCC------CCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCC
Confidence 99999752 4578888753 33 22 69999999988888776 3 3577765 56777666554 5
Q ss_pred ccEEE
Q psy3759 649 EGTLV 653 (844)
Q Consensus 649 ~GT~I 653 (844)
.||.|
T Consensus 244 ~GT~i 248 (248)
T cd04252 244 AGTLI 248 (248)
T ss_pred CCccC
Confidence 89975
No 99
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.81 E-value=6.1e-19 Score=201.83 Aligned_cols=202 Identities=18% Similarity=0.179 Sum_probs=155.1
Q ss_pred hhhhhhhhhhhhhCCCeEEEEeCchHHhhhccc---ccc-------CCCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy3759 448 IKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ-------NIDRSTADYMGMLATIINSLALFDILNKSGIISH 517 (844)
Q Consensus 448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 517 (844)
+..++++|+.|...|.++|||||||.....+.. ... -.++.+++...++ ++..+..|++.|+.. +++.
T Consensus 34 ~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~-~g~vn~~l~~~l~~~-~~~~ 111 (429)
T TIGR01890 34 LGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLEQAQQA-AGTLRLAIEARLSMS-LSNT 111 (429)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHH-hChHHHHHHHHHHhc-CCcc
Confidence 357999999999999999999999944433222 211 2377788888876 778888899998876 4433
Q ss_pred E-----eehhchh----------------h--hhhccchHHHHHHHhCCCEEEEeC-CC---CC-CCCcchHHHHHHHHH
Q psy3759 518 V-----MSAISIE----------------K--FLESYIPLNAIKYLEEGKVVIFAG-GI---GN-PFFTTDTTAALRAAE 569 (844)
Q Consensus 518 ~-----l~~~~~~----------------~--~~~~~~~~~l~~lL~~g~VPVv~G-~~---G~-~~~s~D~lAa~lA~~ 569 (844)
+ +++.+.+ . .+..++.+.+..+++.|+|||+++ +. |. -++++|++|+.||.+
T Consensus 112 ~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~a 191 (429)
T TIGR01890 112 PMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAIS 191 (429)
T ss_pred cccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHH
Confidence 2 3332321 1 145578999999999999999997 22 21 257799999999999
Q ss_pred cCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-----hcc-ccchHHHHHHHHhCCC-CEEEEecCCcchHHH
Q psy3759 570 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKL-EIMDSTAFSFCRDQKL-PIRVFSIIKSGALKR 642 (844)
Q Consensus 570 l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-----~G~-~v~~~~Aa~~a~~~gi-~v~I~~g~~~~~i~~ 642 (844)
|+|++|+++|||||||+++ .++|++++.+++.+ .|+ |..++.++..|.+.|+ +++|++|..|+.+..
T Consensus 192 l~a~kli~ltdv~Gv~~~~------g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~ 265 (429)
T TIGR01890 192 LKADKLIYFTLSPGISDPD------GTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQ 265 (429)
T ss_pred cCCCEEEEEeCCCcccCCC------CCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHH
Confidence 9999999999999999642 46888998766654 245 5999999999999996 689999999999888
Q ss_pred HHc-CCcccEEEEecc
Q psy3759 643 VIE-GKNEGTLVYEIY 657 (844)
Q Consensus 643 ~l~-Ge~~GT~I~~~~ 657 (844)
.|. .+..||.|+++.
T Consensus 266 el~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 266 ELFTRDGIGTSISKEA 281 (429)
T ss_pred HHhcCCCCcceEeccc
Confidence 775 556899999874
No 100
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.80 E-value=4.6e-19 Score=188.04 Aligned_cols=195 Identities=11% Similarity=0.076 Sum_probs=150.1
Q ss_pred ccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehh
Q psy3759 443 INSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI 522 (844)
Q Consensus 443 id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~ 522 (844)
.+++.++.+++.|+.|...|.++|||||||........ . .......++.. ..+..|+..|+.+|++++++++.
T Consensus 48 ~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~-~-----~~~~~~~~v~~-~~n~~Lv~~L~~~G~~A~gl~g~ 120 (271)
T cd04236 48 RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS-D-----LELQAARSRLV-KDCKTLVEALQANSAAAHPLFSG 120 (271)
T ss_pred cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc-C-----CcchheehhHH-HHHHHHHHHHHhCCCCeeeecCc
Confidence 35678899999999999999999999999965443332 1 12222233333 56778889999999999999876
Q ss_pred ch------------hhhhhccchHHHHHHHhCCCEEEEeCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeecccccc
Q psy3759 523 SI------------EKFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIY 585 (844)
Q Consensus 523 ~~------------~~~~~~~~~~~l~~lL~~g~VPVv~G~----~G~-~~~s~D~lAa~lA~~l~Ad~LiilTDVdGVy 585 (844)
.. ...+..++.+.+..+|+.|+|||++|. .|. -++++|.+|+.+|.+|+|++|+++|||+|||
T Consensus 121 ~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~ 200 (271)
T cd04236 121 ESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLR 200 (271)
T ss_pred cceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceE
Confidence 21 011456789999999999999999981 122 2477999999999999999999999999999
Q ss_pred cCCCCCCCCceeecccCH-HHHHh-------hccc---cchHHHHHHHHhCCCCEEEEecCCcchH-HHHHcCCcccEEE
Q psy3759 586 NSDPNKCLSAIIYKKITF-DEVIS-------KKLE---IMDSTAFSFCRDQKLPIRVFSIIKSGAL-KRVIEGKNEGTLV 653 (844)
Q Consensus 586 t~dP~~~~~a~~I~~i~~-~e~~~-------~G~~---v~~~~Aa~~a~~~gi~v~I~~g~~~~~i-~~~l~Ge~~GT~I 653 (844)
+++ .++|++++. +|..+ .||| ++++.++.-+...|++|+|++ |+.+ .+++..++.||+|
T Consensus 201 ~~~------g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 201 DQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred CCC------CCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence 743 457888884 66543 7899 889999999999999999987 4444 4556667789986
No 101
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.80 E-value=8.1e-18 Score=205.12 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=126.1
Q ss_pred HHHHHH--HHHHHHHHHHHHcCCceeEeehhchhh----h-----hhccchHHHHHHH-hCCCEEEEeCCCCCCC---Cc
Q psy3759 494 GMLATI--INSLALFDILNKSGIISHVMSAISIEK----F-----LESYIPLNAIKYL-EEGKVVIFAGGIGNPF---FT 558 (844)
Q Consensus 494 ~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~----~-----~~~~~~~~l~~lL-~~g~VPVv~G~~G~~~---~s 558 (844)
.+++.| .++.+|+.+|++.|+++..+++.++-. . ........+.+++ +.+.|||++||.|... .+
T Consensus 121 ~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~t 200 (819)
T PRK09436 121 AIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGELV 200 (819)
T ss_pred heeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCEE
Confidence 334444 478889999999999999998866410 0 0112234555554 4689999999877321 11
Q ss_pred ------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCE
Q psy3759 559 ------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI 629 (844)
Q Consensus 559 ------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v 629 (844)
+|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+ .|.+++|+.|+.+|.++|+|+
T Consensus 201 tlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi 280 (819)
T PRK09436 201 TLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPC 280 (819)
T ss_pred EeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceE
Confidence 89999999999999999999999999999999999999999999999987 799999999999999999999
Q ss_pred EEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 630 RVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 630 ~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
+|.|+++|+ ..||+|++.
T Consensus 281 ~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 281 LIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred EEccCCCCC---------CCceEEEec
Confidence 999999874 469999764
No 102
>PRK05925 aspartate kinase; Provisional
Probab=99.80 E-value=7.2e-19 Score=199.64 Aligned_cols=155 Identities=22% Similarity=0.204 Sum_probs=124.8
Q ss_pred HHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhhhh-----hccc----hHHHHH-HHhCCCEEEEeCCCCCC--C-C
Q psy3759 493 MGMLATII--NSLALFDILNKSGIISHVMSAISIEKFL-----ESYI----PLNAIK-YLEEGKVVIFAGGIGNP--F-F 557 (844)
Q Consensus 493 ~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~~----~~~l~~-lL~~g~VPVv~G~~G~~--~-~ 557 (844)
..+++.|+ ++.+++.+|+..|+++..+++.++-... ..++ .+.+.. .+..+.|||++||.|.. + .
T Consensus 103 d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ 182 (440)
T PRK05925 103 ARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGKT 182 (440)
T ss_pred hhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCCE
Confidence 44444554 7889999999999999999887651100 0111 112222 34567899999988743 1 1
Q ss_pred c------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759 558 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 628 (844)
Q Consensus 558 s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 628 (844)
+ ||++|+++|.+++||.+++|||||||||+||+.+|+|++|++++++|+.+ .|..+.++.++++|.++|+|
T Consensus 183 ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ip 262 (440)
T PRK05925 183 TVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIP 262 (440)
T ss_pred EEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCc
Confidence 1 99999999999999999999999999999999999999999999999877 68999999999999999999
Q ss_pred EEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 629 IRVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 629 v~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
++|.|+++|+ ..||+|.+.
T Consensus 263 i~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 263 IFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred EEEecCCCCC---------CCccEEecC
Confidence 9999999985 469999864
No 103
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.79 E-value=9.3e-19 Score=211.65 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=128.1
Q ss_pred HHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhh--------hhhccchHHHHHHHhC--CCEEEEeCCCCCC--C-C
Q psy3759 493 MGMLATII--NSLALFDILNKSGIISHVMSAISIEK--------FLESYIPLNAIKYLEE--GKVVIFAGGIGNP--F-F 557 (844)
Q Consensus 493 ~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~--------~~~~~~~~~l~~lL~~--g~VPVv~G~~G~~--~-~ 557 (844)
..+++.|+ ++.+|+.+|+..|+++..+++.++-. +........+...+.. +.|||++||+|.. + .
T Consensus 123 d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ 202 (810)
T PRK09466 123 AEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGET 202 (810)
T ss_pred hheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCE
Confidence 44445554 78889999999999999999876511 1112234567776654 3899999998743 1 2
Q ss_pred c------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759 558 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 628 (844)
Q Consensus 558 s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 628 (844)
+ +|++|+.+|.+|+|+.+.||||||||||+||+..|+|++|++++++|+.+ +|.+++||.+.++|.+++||
T Consensus 203 ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ip 282 (810)
T PRK09466 203 VLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDID 282 (810)
T ss_pred EEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCe
Confidence 2 89999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred EEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759 629 IRVFSIIKSGALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 629 v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 655 (844)
++|.|.++|+ ..||+|+.
T Consensus 283 i~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 283 LQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred EEEecCCCCC---------CCceEEec
Confidence 9999998874 56999976
No 104
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.76 E-value=4.4e-18 Score=209.66 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHcCCceeEeehhchhhhh-----------------hccchHHHHHHHhCC-CEEEEeCCCCCC--C-Cc
Q psy3759 500 INSLALFDILNKSGIISHVMSAISIEKFL-----------------ESYIPLNAIKYLEEG-KVVIFAGGIGNP--F-FT 558 (844)
Q Consensus 500 ~~~~ll~~~L~~~gi~a~~l~~~~~~~~~-----------------~~~~~~~l~~lL~~g-~VPVv~G~~G~~--~-~s 558 (844)
.++.+|+.+|++.|+++..+++.++.... .......+..++..+ .|||++||.|.. + ++
T Consensus 129 lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~t 208 (861)
T PRK08961 129 LSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTA 208 (861)
T ss_pred HHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEE
Confidence 47888999999999999999887651110 001233444555555 599999988743 2 11
Q ss_pred ------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCE
Q psy3759 559 ------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI 629 (844)
Q Consensus 559 ------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v 629 (844)
+|++|+.+|.+|+||.++++||||||||+||+.+|+|++|++++++|+.+ .|++++|+.|+++|+++|||+
T Consensus 209 tLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i 288 (861)
T PRK08961 209 LLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPM 288 (861)
T ss_pred EEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999999999999999999999876 799999999999999999999
Q ss_pred EEEecCCcchHHHHHcCCcccEEEEec
Q psy3759 630 RVFSIIKSGALKRVIEGKNEGTLVYEI 656 (844)
Q Consensus 630 ~I~~g~~~~~i~~~l~Ge~~GT~I~~~ 656 (844)
+|.|+++|+ ..||+|.++
T Consensus 289 ~v~~~~~~~---------~~gT~I~~~ 306 (861)
T PRK08961 289 AILDTERPD---------LSGTSIDGD 306 (861)
T ss_pred EEEeCCCCC---------CCccEEeCC
Confidence 999998873 468999754
No 105
>PRK09181 aspartate kinase; Validated
Probab=99.75 E-value=7.7e-17 Score=184.60 Aligned_cols=160 Identities=12% Similarity=0.124 Sum_probs=126.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHh----CCCEEEEeCCCCCCC--Cc-
Q psy3759 486 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT- 558 (844)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~----~g~VPVv~G~~G~~~--~s- 558 (844)
++...|.........++.+|+.+|+..|+++..++......-........+...+. .+.|||++||.|.+. ++
T Consensus 135 ~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itT 214 (475)
T PRK09181 135 LLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRT 214 (475)
T ss_pred ChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEe
Confidence 34444444444444578899999999999999855432211001112456666655 478999999876442 22
Q ss_pred -----chHHHHHHHHHcCCcEEEEeecccccccCCCCCC--CCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759 559 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 628 (844)
Q Consensus 559 -----~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~--~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 628 (844)
+|++|+.+|.+|+||.+.|||||+ ||++||+.. |+|++|++++|+|+.+ +|.++++|.|.++|.+++||
T Consensus 215 LGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ip 293 (475)
T PRK09181 215 FDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP 293 (475)
T ss_pred cCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCe
Confidence 999999999999999999999997 999999999 6999999999999988 89999999999999999999
Q ss_pred EEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759 629 IRVFSIIKSGALKRVIEGKNEGTLVYE 655 (844)
Q Consensus 629 v~I~~g~~~~~i~~~l~Ge~~GT~I~~ 655 (844)
++|.|.++|+ ..||+|++
T Consensus 294 i~V~nt~~p~---------~~GT~I~~ 311 (475)
T PRK09181 294 LRIKNTFEPE---------HPGTLITK 311 (475)
T ss_pred EEEecCCCCC---------CCCeEEec
Confidence 9999998874 57999975
No 106
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.71 E-value=9.3e-17 Score=171.10 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=124.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHh----CCCEEEEeCCCCCCC--Cc-
Q psy3759 486 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT- 558 (844)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~----~g~VPVv~G~~G~~~--~s- 558 (844)
.+...|.........++.+++.+|+..|+++..++...............+.+.+. .+.|||++||.++.. .+
T Consensus 129 ~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itT 208 (304)
T cd04248 129 LLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMRE 208 (304)
T ss_pred CHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEE
Confidence 34555555555555578899999999999998744432211000112344444443 578999999865432 11
Q ss_pred -----chHHHHHHHHHcCCcEEEEeecccccccCCCCCC--CCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759 559 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 628 (844)
Q Consensus 559 -----~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~--~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 628 (844)
+|++|+.+|.+++|+.+.|||||+ ||++||+.+ |+|+.|++++++|+.+ .|+++.+|.|+++|.+++||
T Consensus 209 LGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IP 287 (304)
T cd04248 209 FDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP 287 (304)
T ss_pred cCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCe
Confidence 999999999999999999999996 999999999 6899999999999988 89999999999999999999
Q ss_pred EEEEecCCcchHHHHHcCCcccEEEE
Q psy3759 629 IRVFSIIKSGALKRVIEGKNEGTLVY 654 (844)
Q Consensus 629 v~I~~g~~~~~i~~~l~Ge~~GT~I~ 654 (844)
++|.|.++|+ ..||+|+
T Consensus 288 i~Vkntf~P~---------~~GTlIt 304 (304)
T cd04248 288 LRVKNTFEPD---------HPGTLIT 304 (304)
T ss_pred EEEecCCCCC---------CCCceeC
Confidence 9999999874 5799984
No 107
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.66 E-value=1.7e-15 Score=169.72 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=130.9
Q ss_pred hhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc---c----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy3759 448 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 517 (844)
Q Consensus 448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 517 (844)
++.++++|+.|...|.++|||||||.......... . + .++.+++.+.++.. ..+..|+..
T Consensus 52 ~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~-~vn~~lv~~--------- 121 (398)
T PRK04531 52 LEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQ-RSNLDLVEA--------- 121 (398)
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHH-HHHHHHHHH---------
Confidence 47899999999999999999999995544332221 1 1 36666666666554 333333322
Q ss_pred EeehhchhhhhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCC
Q psy3759 518 VMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC 592 (844)
Q Consensus 518 ~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~ 592 (844)
+..+|+.|.|||+++. .|.. ++++|.+|+.+|.+|+|++|+++|||+|||+.+
T Consensus 122 ------------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~---- 179 (398)
T PRK04531 122 ------------------VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDAD---- 179 (398)
T ss_pred ------------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCC----
Confidence 6778999999999872 1222 467999999999999999999999999999754
Q ss_pred CCceeecccCH-HHHHh-------hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCC-cccEEEEecc
Q psy3759 593 LSAIIYKKITF-DEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLVYEIY 657 (844)
Q Consensus 593 ~~a~~I~~i~~-~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge-~~GT~I~~~~ 657 (844)
.++|++++. ++... +|||..|+.++..|.+...+++++++..|+++...|.++ ..||.|...+
T Consensus 180 --g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~ 251 (398)
T PRK04531 180 --GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRGE 251 (398)
T ss_pred --CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecCC
Confidence 457778875 33322 689999999988887654567788888899998887765 4799999763
No 108
>PLN02825 amino-acid N-acetyltransferase
Probab=99.63 E-value=5.4e-15 Score=169.72 Aligned_cols=202 Identities=17% Similarity=0.122 Sum_probs=147.7
Q ss_pred hhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccc---ccc----C---CCcchHHHHHHHHHHHHHHHHHHH--------
Q psy3759 447 IIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTADYMGMLATIINSLALFDI-------- 508 (844)
Q Consensus 447 ~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~-------- 508 (844)
.+..++.+|+.|...|.++|||||||........ ... + .++.+++.. +.+.+..+..+.+.
T Consensus 33 ~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~-~~~~G~v~~~i~a~Ls~~~~v~ 111 (515)
T PLN02825 33 HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQAS-MEAAGKIRVMIEAKLSPGPSIP 111 (515)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHH-HHHHHHHHHHHHHhhccccchh
Confidence 5788999999999999999999999944333222 211 1 266777774 66777777777765
Q ss_pred -HHHcCCce----eEeehhchhh------------------hhhccchHHHHHHHhCCCEEEEeC----CCCCC-CCcch
Q psy3759 509 -LNKSGIIS----HVMSAISIEK------------------FLESYIPLNAIKYLEEGKVVIFAG----GIGNP-FFTTD 560 (844)
Q Consensus 509 -L~~~gi~a----~~l~~~~~~~------------------~~~~~~~~~l~~lL~~g~VPVv~G----~~G~~-~~s~D 560 (844)
|+.+|+++ +.+++.+.+. .++.++.+.+..+|+.|.|||+++ ..|.. |+++|
T Consensus 112 ~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD 191 (515)
T PLN02825 112 NLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTY 191 (515)
T ss_pred HHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHH
Confidence 48888887 6666554311 156789999999999999999998 22322 57799
Q ss_pred HHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hc---------c--------------c--
Q psy3759 561 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KK---------L--------------E-- 612 (844)
Q Consensus 561 ~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G---------~--------------~-- 612 (844)
.+|+.+|.+|+||+||++|||+ +++.+ .++|++++.+|+.+ .+ . .
T Consensus 192 ~vA~avA~aL~A~KLI~ltd~~-~~~~~------g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
T PLN02825 192 EVATACALAIGADKLICIVDGP-ILDEN------GRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDS 264 (515)
T ss_pred HHHHHHHHHcCCCeEEEEeCcc-eecCC------CCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhcccccccccccccc
Confidence 9999999999999999999977 55433 34677777665543 11 0 0
Q ss_pred ------------------------------c-------------------------chHHHHHHHHhCCCC-EEEEecCC
Q psy3759 613 ------------------------------I-------------------------MDSTAFSFCRDQKLP-IRVFSIIK 636 (844)
Q Consensus 613 ------------------------------v-------------------------~~~~Aa~~a~~~gi~-v~I~~g~~ 636 (844)
. .++.+|..|.+.|++ ++++++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~ 344 (515)
T PLN02825 265 VNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTI 344 (515)
T ss_pred ccccccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCC
Confidence 0 015677788889996 99999999
Q ss_pred cchHHHHHc-CCcccEEEEec
Q psy3759 637 SGALKRVIE-GKNEGTLVYEI 656 (844)
Q Consensus 637 ~~~i~~~l~-Ge~~GT~I~~~ 656 (844)
++.|..-|. -+++||.|+.+
T Consensus 345 ~gall~elft~dg~gt~i~~~ 365 (515)
T PLN02825 345 EGVLLLELFTRDGMGTMIASD 365 (515)
T ss_pred CchHHHHhhccCCceeEeccC
Confidence 998875544 56789999987
No 109
>KOG0456|consensus
Probab=99.62 E-value=1.4e-15 Score=160.91 Aligned_cols=237 Identities=18% Similarity=0.263 Sum_probs=175.2
Q ss_pred CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy3759 439 DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 518 (844)
Q Consensus 439 ~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 518 (844)
.....++..+..+.+.+.++... ......++.++.|+...+...+..+.++++|+..|..+..
T Consensus 158 ~e~~~d~~v~~~~le~leq~Lk~-----------------i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~ 220 (559)
T KOG0456|consen 158 HELIVDPAVIAKLLEGLEQLLKG-----------------IAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQ 220 (559)
T ss_pred HHhccCHHHHHHHHHHHHHHHHH-----------------HHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCcccee
Confidence 44566777777777777766431 1122345678888888888888999999999999999988
Q ss_pred eehhchhhh----------hhccchHHHHHH----HhCCCEEEEeCCCCCCC----Cc------chHHHHHHHHHcCCcE
Q psy3759 519 MSAISIEKF----------LESYIPLNAIKY----LEEGKVVIFAGGIGNPF----FT------TDTTAALRAAEIKAEI 574 (844)
Q Consensus 519 l~~~~~~~~----------~~~~~~~~l~~l----L~~g~VPVv~G~~G~~~----~s------~D~lAa~lA~~l~Ad~ 574 (844)
+....+... ...+-+.....+ ...+.|||++||.|... ++ +|.+|+.+|.+|++|.
T Consensus 221 ~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~E 300 (559)
T KOG0456|consen 221 YDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDE 300 (559)
T ss_pred echhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchh
Confidence 776654322 111112222222 23579999999877321 22 8999999999999999
Q ss_pred EEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccE
Q psy3759 575 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 651 (844)
Q Consensus 575 LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT 651 (844)
+-+|.|||||+|+||++.|.|++++.++++|+.+ +|+.+.+|...+.+.+..||+.|-|..+|- ..||
T Consensus 301 iQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~---------~~GT 371 (559)
T KOG0456|consen 301 IQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPT---------APGT 371 (559)
T ss_pred hhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCC---------CCce
Confidence 9999999999999999999999999999999988 899999999999999999999999998883 5799
Q ss_pred EEEecchhh--------h-h--hhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEE
Q psy3759 652 LVYEIYIMI--------I-S--DIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQV 701 (844)
Q Consensus 652 ~I~~~~~m~--------~-~--~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V 701 (844)
.|+|+.+|- + + .+++-...+|-...-.|..-|.-+-.-..+.+++..-.|
T Consensus 372 vI~~d~~m~k~~~TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvvaTSEV 432 (559)
T KOG0456|consen 372 VITPDRDMSKAGLTSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVATSEV 432 (559)
T ss_pred EeccchhhhhccceEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEEeeeE
Confidence 999984432 0 1 123444566777777766666655555556566554433
No 110
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.59 E-value=2e-14 Score=138.33 Aligned_cols=173 Identities=21% Similarity=0.217 Sum_probs=134.2
Q ss_pred CCeEEEEeCchHHhhh--ccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHH
Q psy3759 462 GIELAIVIGGGNICRG--ISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKY 539 (844)
Q Consensus 462 G~~vVIVhGGG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~l 539 (844)
+.++++|.|||.++.- ......+++....+|+.+.++.+.+.++++.........+. .+ +..
T Consensus 26 ~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv~-ep---------------~~~ 89 (212)
T COG2054 26 QRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTVT-EP---------------EDG 89 (212)
T ss_pred cceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhcccccceee-ch---------------hhc
Confidence 3479999999955442 34445578899999999999999999998876554422211 11 112
Q ss_pred HhCCCEEEEeCC------CCCC---CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHhhc
Q psy3759 540 LEEGKVVIFAGG------IGNP---FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 610 (844)
Q Consensus 540 L~~g~VPVv~G~------~G~~---~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~~G 610 (844)
...+..||+-+. .--| .+|+|++|+++|.+++|..+++.|||||||+.+|+ ++++++|+..++.. |
T Consensus 90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~-~ 164 (212)
T COG2054 90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT-G 164 (212)
T ss_pred cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc-C
Confidence 334455555431 0011 36799999999999999999999999999999875 48999999998865 7
Q ss_pred cccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCc-ccEEEEe
Q psy3759 611 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKN-EGTLVYE 655 (844)
Q Consensus 611 ~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~-~GT~I~~ 655 (844)
--..|+..-.++.++++.++++||..|+++.+++.|++ +||+|.+
T Consensus 165 ~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 165 ETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred cccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence 78889999999999999999999999999999999975 6999986
No 111
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6.2e-14 Score=146.24 Aligned_cols=157 Identities=24% Similarity=0.263 Sum_probs=118.2
Q ss_pred EEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH-h
Q psy3759 184 GVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK-L 262 (844)
Q Consensus 184 ~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k-g 262 (844)
+++--||.+++| +.|+. +..|. +-++.++++... ..+.+-+.+-...+-.++.++..+..+ |
T Consensus 74 v~vEvN~ETDFV-----AkN~~--F~~l~-~~ia~~~l~~~~---------~~ve~l~~~~~~~~~tv~e~~~~~~AkIG 136 (296)
T COG0264 74 VLVEVNCETDFV-----AKNAE--FQELA-NKIAKAALEKKP---------ADVEELKAAFEPGGKTVEEEIAALIAKIG 136 (296)
T ss_pred EEEEEeccccce-----eCChh--HHHHH-HHHHHHHHHhCc---------ccHHHHHhhhcccCccHHHHHHHHHHHhc
Confidence 556667766665 33333 33333 333344433321 124444444444566899999999999 9
Q ss_pred hhhhhhcccccCC-CCceEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh------------
Q psy3759 263 GKKILNISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ------------ 327 (844)
Q Consensus 263 ~~~a~kk~~r~~~-eG~i~~y~~--~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~~~~~------------ 327 (844)
++.-.+|...... +|.+++|+| +++||+|++++. + ...++|++||||+||++|.|++.
T Consensus 137 ENi~lRR~~~~~~~~~~v~~Y~H~~griGVlv~~~~~-~------~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er 209 (296)
T COG0264 137 ENISLRRFAVLEAGDGVVGSYLHGNGRIGVLVALKGG-A------ADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKER 209 (296)
T ss_pred cceeEEEEEEeecCcccEEEEEeCCCcEEEEEEEecc-c------hHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHH
Confidence 9999988888763 468999999 799999999987 3 35689999999999999998665
Q ss_pred ----------------------------------hccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCcee
Q psy3759 328 ----------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 370 (844)
Q Consensus 328 ----------------------------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~i~ 370 (844)
++|+|++|+++||++++++. ++++.+|+||++|+||.
T Consensus 210 ~i~~~~~~~~gKP~~i~eKiVeGr~~Kf~~E~~Ll~Q~fV~d~~~TV~~~lke~------~~~v~~FvR~evGegie 280 (296)
T COG0264 210 EIFLAQLKAEGKPENIVEKIVEGRMNKFLAEVCLLEQPFVKDPKKTVEQLLKEA------NAKVTEFVRFEVGEGIE 280 (296)
T ss_pred HHHHHHHHhcCChHHHHHHHHhHHHHHHHHHHhhccCceecCcchhHHHHHHhc------CceeeeeeeeeccCCce
Confidence 78999999999999999975 78999999999999874
No 112
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=99.51 E-value=9.1e-14 Score=148.04 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=115.5
Q ss_pred EEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 261 (844)
Q Consensus 182 ~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k 261 (844)
.-+++--||.++++. ++..++.|.-.+. .+++.- ....+.+..++....+..+ +++..+..+
T Consensus 69 ~~~ivElncETDFVA-------rne~F~~l~~~ia-~~~~~~---------~~~~~e~l~~~~~~~~~tv-d~i~~~~a~ 130 (290)
T TIGR00116 69 KAVIVEVNSETDFVA-------KNAGFKEFANKLL-DELKAN---------KITTLEELQAQELENREKV-EYLAALAAK 130 (290)
T ss_pred EEEEEEEecCCcccc-------CChHHHHHHHHHH-HHHHhc---------CCCCHHHHhhccccCCCcH-HHHHHHHHH
Confidence 567777788877763 3444555543333 222211 1122333332222233478 888888888
Q ss_pred -hhhhhhhcccccCCC-CceEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh----------
Q psy3759 262 -LGKKILNISNRNAKD-GVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ---------- 327 (844)
Q Consensus 262 -g~~~a~kk~~r~~~e-G~i~~y~~--~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~~~~~---------- 327 (844)
|++...+|..+.... |.++.|+| |++||||++++++|. +|+++|||||+|++|.+++.
T Consensus 131 iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkigvlv~~~~~~~~--------~~ak~iAmhIaA~~P~~l~~~~vp~~vie~ 202 (290)
T TIGR00116 131 IGENINLRRVAVLEGDSNVIGSYLHAGARIGVLVALKGKADE--------ELAKHIAMHVAASKPQFIDPDDVSAEVVKK 202 (290)
T ss_pred hccceEEEEEEEEecCCCcEEEEEcCCCcEEEEEEEecCchH--------HHHHHHHHHHHhcCCccCchhhCCHHHHHH
Confidence 999999999888664 79999999 799999999997662 58999999999999987654
Q ss_pred ------------------------------------hccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCce
Q psy3759 328 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 369 (844)
Q Consensus 328 ------------------------------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~i 369 (844)
++|+|++|+++||++++++ .+++|.+|+||++|+|+
T Consensus 203 Erei~~~~~~~~gKP~~i~eKIv~Grl~Kf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~~~v~~F~R~~vGegi 274 (290)
T TIGR00116 203 ERQIQTDQAELSGKPKEIAEKMVEGRMKKFLAEISLLGQKFVMDPSKTVGQFLKE------KNAKVTEFIRFEVGEGI 274 (290)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHhhhHHHHHhhhceeeecccccCCccCHHHHHHH------cCCEEEEEEEEEecCCc
Confidence 6899999999999999997 45999999999999975
No 113
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....
Probab=99.49 E-value=4.1e-14 Score=146.40 Aligned_cols=110 Identities=26% Similarity=0.324 Sum_probs=91.7
Q ss_pred cCCHHHHHHHHHHH-hhhhhhhcccccCC-CCceEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCC
Q psy3759 248 NGKLSKAEEILRIK-LGKKILNISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPI 323 (844)
Q Consensus 248 ~~d~~~A~~~Lr~k-g~~~a~kk~~r~~~-eG~i~~y~~--~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~ 323 (844)
+..++.++..+..+ |++...+|+.+..+ +|.+++|+| ||+|+||+++++++.. ++++++|||||+|++|.
T Consensus 62 ~~tv~d~i~~~i~~igEnI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~------~~~ak~iAmhIaA~~P~ 135 (221)
T PF00889_consen 62 SKTVKDAIAELIAKIGENIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSA------KEFAKDIAMHIAAMNPK 135 (221)
T ss_dssp SSHHHHHHHHHHHHH-S-EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGG------HHHHHHHHHHHHHH--S
T ss_pred cccHHHHHHHHHHHhCCCEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchH------HHHHHHHHHHHhhhCcc
Confidence 37889999999988 99999999999865 789999999 7999999999998864 68999999999999998
Q ss_pred Chhh----------------------------------------------hccccccCCCccHHHHHHHHHHhcCCCeEE
Q psy3759 324 NLDQ----------------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKI 357 (844)
Q Consensus 324 ~~~~----------------------------------------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l 357 (844)
+++. ++|+|++|+++||+|++++..+. |+|
T Consensus 136 ~l~~~~vp~~~~~~E~~i~~~~~~~~gKpe~i~ekIv~Gkl~k~~~e~~Ll~Q~fv~D~~~tV~~~l~~~~~~----i~v 211 (221)
T PF00889_consen 136 YLSEEDVPAEVLEKEKEIAKEQAKAEGKPENIIEKIVEGKLKKFYKENCLLEQPFVKDPKKTVKQYLKEVGKE----IKV 211 (221)
T ss_dssp BSSCTGS-CCHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHCBTCCSBETTETTSBHHHHHHCTTHH-----EE
T ss_pred ccCcccCCHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhhHhheehheeecCCCccCCCCccHHHHHHhcCCC----cEE
Confidence 7654 78999999999999999876554 899
Q ss_pred EEEEEeeeCC
Q psy3759 358 RRFKLFKTNN 367 (844)
Q Consensus 358 ~rf~~~~~g~ 367 (844)
.+|.||++||
T Consensus 212 ~~F~R~~vGE 221 (221)
T PF00889_consen 212 VGFVRFEVGE 221 (221)
T ss_dssp EEEEEEETTT
T ss_pred EEEEEEecCC
Confidence 9999999986
No 114
>PRK09377 tsf elongation factor Ts; Provisional
Probab=99.47 E-value=2.3e-13 Score=145.04 Aligned_cols=155 Identities=22% Similarity=0.231 Sum_probs=117.2
Q ss_pred EEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 261 (844)
Q Consensus 182 ~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k 261 (844)
.-+++.-||.++++. ++..+..|.-.+...+.... ...+.+..++-. .+..+..++..+..+
T Consensus 70 ~~~~vElncETDFVA-------rne~F~~l~~~i~~~~l~~~----------~~~~e~ll~~~~-~g~tv~d~i~~~~~~ 131 (290)
T PRK09377 70 KGVLVEVNSETDFVA-------KNEDFQALANEVAEAALAAK----------PADVEALLALKL-DGGTVEEARTELIAK 131 (290)
T ss_pred EEEEEEEecCCcccc-------CChHHHHHHHHHHHHHHhcC----------CCCHHHHHhccc-cCCcHHHHHHHHHHH
Confidence 467788888877763 44455555544333333211 112323222211 356899999999999
Q ss_pred -hhhhhhhcccccC-CCCceEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh----------
Q psy3759 262 -LGKKILNISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ---------- 327 (844)
Q Consensus 262 -g~~~a~kk~~r~~-~eG~i~~y~~--~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~~~~~---------- 327 (844)
|++...+|..+.. ++|.|+.|+| |++||||+++++++ +|+++|||||+|++|.+++.
T Consensus 132 iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkigvlV~~~~~~~---------~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~ 202 (290)
T PRK09377 132 IGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDE---------ELAKDIAMHIAAMNPEYLSREDVPAEVVEK 202 (290)
T ss_pred hcCceEEEEEEEEeecCCEEEEEEcCCCcEEEEEEEccCcH---------HHHHHHHHHHHhcCCccCChhhCCHHHHHH
Confidence 9999999988886 4789999999 79999999998642 58999999999999987554
Q ss_pred ------------------------------------hccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCce
Q psy3759 328 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 369 (844)
Q Consensus 328 ------------------------------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~i 369 (844)
++|+|++|+++||++++++ .+++|.+|+||++||++
T Consensus 203 E~~i~~~~~~~~gKP~~i~eKIv~Grl~Kf~~e~~Ll~Q~fi~D~~~tV~~~l~~------~~i~v~~F~R~evGe~~ 274 (290)
T PRK09377 203 EREIAKEQAKEEGKPEEIVEKIVEGRLNKFLKEVVLLEQPFVKDPKKTVGQLLKE------AGAKVVGFVRFEVGEGI 274 (290)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHhHHHHHHhhhceeccCcccCCCCcCHHHHHHH------cCCEEEEEEEEEecCcc
Confidence 6899999999999999997 46999999999999974
No 115
>CHL00098 tsf elongation factor Ts
Probab=99.04 E-value=2.1e-10 Score=116.07 Aligned_cols=90 Identities=31% Similarity=0.446 Sum_probs=67.9
Q ss_pred EEeeeCCceeeeccC-CceEEEEEecCCch---------hHHHHHHhhhccc-CCcccCccccchHHHhhhhhHHHHHHH
Q psy3759 361 KLFKTNNNLISYLHD-NKIGVIVEYNGDNE---------SAVKDVAMHIAAM-KPIALSSDQIPKKIIEKEYSLAVLKAQ 429 (844)
Q Consensus 361 ~~~~~g~~i~~Y~H~-~~~g~lv~~~~~~~---------~~~~~iamhi~a~-~p~~~~~~~vp~~~i~~e~~~iv~k~~ 429 (844)
.|...++.+++|+|. |++||||++++..+ ++|++|||||||| +|.|+++++||++++++|++++..++.
T Consensus 50 ~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfVArn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~~ 129 (200)
T CHL00098 50 TRITTEGLIESYIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKDD 129 (200)
T ss_pred ccccccCeEEEEEecCCCEEEEEEEecCcccccccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHHH
Confidence 344444568999996 79999999988532 5789999999999 799999999999999999998777753
Q ss_pred hhhhhhhcCCCCccc----chhhhhhhhhhh
Q psy3759 430 QLGEALMKGDAYNIN----SSIIKNIISEIS 456 (844)
Q Consensus 430 ~~~~~l~~g~~~~id----~~~i~~~a~~I~ 456 (844)
. .|+|..+- +.++..+..++.
T Consensus 130 ~------~gKp~~i~ekiv~Grl~k~~~e~~ 154 (200)
T CHL00098 130 L------QNKPEEIKEKIVEGRIKKRLKELS 154 (200)
T ss_pred h------cCCcHHHHHHHHhhHHHHHHHHhh
Confidence 2 36665443 334455555554
No 116
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=98.94 E-value=1e-09 Score=111.21 Aligned_cols=91 Identities=33% Similarity=0.484 Sum_probs=67.4
Q ss_pred EEEeeeCCceeeeccC-CceEEEEEecCC------ch---hHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHHH
Q psy3759 360 FKLFKTNNNLISYLHD-NKIGVIVEYNGD------NE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQ 429 (844)
Q Consensus 360 f~~~~~g~~i~~Y~H~-~~~g~lv~~~~~------~~---~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~~ 429 (844)
.-|....+-|++|+|. |+.|+||++.+. ++ +++++||||||||+|.|+++++||++++++|++++..++.
T Consensus 52 ~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFVa~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~ 131 (198)
T PRK12332 52 AGRVAAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQAL 131 (198)
T ss_pred ccccccCceEEEEEecCCCEEEEEEEeccCCccccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHH
Confidence 3444444558999996 799999988764 22 4799999999999999999999999999999998777753
Q ss_pred hhhhhhhcCCCCcccc----hhhhhhhhhhh
Q psy3759 430 QLGEALMKGDAYNINS----SIIKNIISEIS 456 (844)
Q Consensus 430 ~~~~~l~~g~~~~id~----~~i~~~a~~I~ 456 (844)
. +|+|..+.+ .+++.+..++.
T Consensus 132 ~------~gKP~~i~ekiv~Grl~K~~~E~~ 156 (198)
T PRK12332 132 N------EGKPENIVEKIVEGRIEKFYKEVC 156 (198)
T ss_pred h------cCCcHHHHHHHHhHHHHHHHhhhh
Confidence 2 356644333 34445555544
No 117
>KOG2436|consensus
Probab=98.12 E-value=7.2e-06 Score=91.64 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=103.4
Q ss_pred cchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcc---cccc----CC---CcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy3759 444 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKIQ----NI---DRSTADYMGMLATIINSLALFDILNKSG 513 (844)
Q Consensus 444 d~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~~----~~---~~~~~~~~~~~~~~~~~~ll~~~L~~~g 513 (844)
.....+.++..++.+...|..+|||||+|.....+. +... +. ++.++...-...+++.+.-+...|+++|
T Consensus 107 ~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~nL~~~g 186 (520)
T KOG2436|consen 107 STSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVINLSQLG 186 (520)
T ss_pred ccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHHHHHHHhh
Confidence 667788899999999999999999999984433322 2211 11 3333333333345566666888899999
Q ss_pred CceeEeehhchh--------------------hhhhccchHHHHHHHhCCCEEEEeC----CCCC-CCCcchHHHHHHHH
Q psy3759 514 IISHVMSAISIE--------------------KFLESYIPLNAIKYLEEGKVVIFAG----GIGN-PFFTTDTTAALRAA 568 (844)
Q Consensus 514 i~a~~l~~~~~~--------------------~~~~~~~~~~l~~lL~~g~VPVv~G----~~G~-~~~s~D~lAa~lA~ 568 (844)
-.+++.++.... .-+..++.+++..+++.|.+|+++. .-|. -++++|.+|..+|.
T Consensus 187 ~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~ 266 (520)
T KOG2436|consen 187 TRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELAL 266 (520)
T ss_pred ceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHh
Confidence 888776654221 0144678899999999999999875 1122 24679999999999
Q ss_pred HcCCcEEEEeecccccccCCCC
Q psy3759 569 EIKAEIILKATKVDGIYNSDPN 590 (844)
Q Consensus 569 ~l~Ad~LiilTDVdGVyt~dP~ 590 (844)
.|+|+.+++++|+.-+...+|+
T Consensus 267 ~L~~~kli~l~d~g~~l~e~ge 288 (520)
T KOG2436|consen 267 ALGPDKLILLMDKGRILKENGE 288 (520)
T ss_pred ccCcceeEEecccccccccCcc
Confidence 9999999999998444444554
No 118
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=97.41 E-value=0.00014 Score=53.37 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=30.3
Q ss_pred hhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHH
Q psy3759 224 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEIL 258 (844)
Q Consensus 224 ~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~L 258 (844)
..+++|+.. |++..+|++||..++||++.|++||
T Consensus 4 ~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEM-GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 357788888 9999999999999999999999998
No 119
>KOG1071|consensus
Probab=96.83 E-value=0.00032 Score=74.32 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHH-hhhhhhhcccccCC--CCceEEEEe-------------CCEEEEEEEecCCchhccchHHHHHHHHH
Q psy3759 250 KLSKAEEILRIK-LGKKILNISNRNAK--DGVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKI 313 (844)
Q Consensus 250 d~~~A~~~Lr~k-g~~~a~kk~~r~~~--eG~i~~y~~-------------~~~gviveln~etdfvA~n~~f~~la~~i 313 (844)
.+..++.....+ |++...||+-+..+ .+.++.|.| |+.|+||.+|+....++ .+..+++.|
T Consensus 192 sl~d~l~~~i~~~GENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~---~~~~~~~~i 268 (340)
T KOG1071|consen 192 SLKDQLALAIGKLGENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLT---SLEDVAKQI 268 (340)
T ss_pred eHHHHHHHHHHHhccceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhh---hHHHHHHHH
Confidence 688888888888 99999999888643 456889998 36789998887665443 467899999
Q ss_pred HHHHHhcCCCChhh----------------hccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCC
Q psy3759 314 AKLITENTPINLDQ----------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN 367 (844)
Q Consensus 314 a~~iaa~~p~~~~~----------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~ 367 (844)
+.|++.|.|..+.+ +.|+|+-|+.+||.+++. +-|.+|..|+||+.||
T Consensus 269 ~q~ivgm~p~s~~e~~k~e~~~~~e~et~ll~q~~lld~~itv~~~l~------~~~~~V~DfvR~E~Ge 332 (340)
T KOG1071|consen 269 CQHIVGMSPESVGESLKDEPGQGAEAETALLSQPSLLDPSITVKEYLD------PHNVSVVDFVRFEVGE 332 (340)
T ss_pred HHHhhccChhhhcccccccccccccchhhheecHhhcCchhhHHHHhc------cCCcchHHHHHHHhcc
Confidence 99999999987651 678999999999999987 5688999999999987
No 120
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.79 E-value=0.02 Score=62.68 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCCCCC-hHhHHHHHHHHHHHHhhh
Q psy3759 42 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTN-FKTIKTSIQRLKEMDLFI 120 (844)
Q Consensus 42 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN-~~~~~~~i~~~~~~~~~~ 120 (844)
+...+..+.++...+.....++|+|.|+|.-....-.+..+++...-+-+...++.|.+.. +..+...+.-
T Consensus 41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~-------- 112 (299)
T PRK05441 41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEG-------- 112 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccc--------
Confidence 4556778888888888888999999999988766555555444332222222244444322 1211111100
Q ss_pred ccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCC----CcchHHHHHHhcCCCEEEEecCCCCC--Cc
Q psy3759 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DG 194 (844)
Q Consensus 121 ~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~i~Dt~~~~--~~ 194 (844)
.++.. +-....+.- .++ ..-|++|.+... +-..+++.|+..|.|||+|++...+| ..
T Consensus 113 ----~ed~~-----------~~~~~~l~~-~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~ 175 (299)
T PRK05441 113 ----AEDDA-----------ELGAADLKA-INL-TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKE 175 (299)
T ss_pred ----cCChH-----------HHHHHHHHh-cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHh
Confidence 00000 000001100 011 357888888654 33467889999999999998644333 24
Q ss_pred ceEEccCCC-----------ccchhhhhhhcccccchh--cch-------------------hhhhhhcccCcchHHHHH
Q psy3759 195 INYVIPGND-----------DSAKSIALYTKGIVDAFL--DAK-------------------TVGELRSKTLAPIMECKK 242 (844)
Q Consensus 195 i~ypIP~N~-----------ds~~si~~~~~~l~~ai~--~g~-------------------~v~~lr~~t~~~~~~ck~ 242 (844)
.||+|.... .+..+..+++++|+..+. .|+ .++=+...||++..+|.+
T Consensus 176 aD~~I~~~~g~E~~~~st~~~s~taqk~iLn~lst~~~~~~gkv~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~ 255 (299)
T PRK05441 176 ADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMISTGVMIRLGKVYGNLMVDVKATNEKLVDRAVRIVMEATGVSREEAEA 255 (299)
T ss_pred CCEEEEcCCCCccccccccccchhHHHHHHHHHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 667664331 244567778888877542 222 122234568999999999
Q ss_pred HHHhccCCHHHHHHHHHHH
Q psy3759 243 ALIEANGKLSKAEEILRIK 261 (844)
Q Consensus 243 aL~~~~~d~~~A~~~Lr~k 261 (844)
+|.+++|++.-|+-.+...
T Consensus 256 ~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 256 ALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHhCCCcHHHHHHHHhC
Confidence 9999999999999877654
No 121
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.34 E-value=0.072 Score=58.26 Aligned_cols=193 Identities=19% Similarity=0.157 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCC-CCChHhHHHHHHHHHHHHhhhc
Q psy3759 43 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGL-LTNFKTIKTSIQRLKEMDLFIT 121 (844)
Q Consensus 43 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~-lTN~~~~~~~i~~~~~~~~~~~ 121 (844)
......|.++...+....+++|+|.|+|.-.-..-.+...+....-|-+....+.|. ...+..+...+.-
T Consensus 38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~--------- 108 (296)
T PRK12570 38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEG--------- 108 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccc---------
Confidence 345577888888888888999999999988765544444433333222221222222 2233322111110
Q ss_pred cCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcc----hHHHHHHhcCCCEEEEecCCCCC--Ccc
Q psy3759 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DGI 195 (844)
Q Consensus 122 ~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~i~Dt~~~~--~~i 195 (844)
..+. +.+ +.+ .+.. .+ + ..-|++|++....+. .+++.|+..|.|+|+|+....+| +..
T Consensus 109 ---~ed~---~~~-~~~---~l~a--~~---l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~a 172 (296)
T PRK12570 109 ---AEDD---PEL-GAQ---DLKA--IG---L-TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIA 172 (296)
T ss_pred ---cCCc---HHH-HHH---HHHH--cC---C-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence 0000 000 000 0111 01 1 356999988766544 67899999999999998654433 346
Q ss_pred eEEcc---CCC--------ccchhhhhhhcccccchhc--ch-----hh------hhh--------hcccCcchHHHHHH
Q psy3759 196 NYVIP---GND--------DSAKSIALYTKGIVDAFLD--AK-----TV------GEL--------RSKTLAPIMECKKA 243 (844)
Q Consensus 196 ~ypIP---~N~--------ds~~si~~~~~~l~~ai~~--g~-----~v------~~l--------r~~t~~~~~~ck~a 243 (844)
||+|. +.. .+..+..+++++|+..+.. |+ +| .+| .+-||++..+|.++
T Consensus 173 D~~I~~~~g~E~~~~st~~~s~taqk~vLd~L~t~~~~r~Gk~~~n~mvd~~~~n~kl~~Ra~~i~~~~~~~~~~~a~~~ 252 (296)
T PRK12570 173 DIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRLGKSYQNLMVDVKATNEKLVARAVRIVMQATGCSEDEAKEL 252 (296)
T ss_pred CEEEeeCcCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhcCeEEEeecchHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 77774 222 2455777888888775522 22 21 233 34489999999999
Q ss_pred HHhccCCHHHHHHHHHH
Q psy3759 244 LIEANGKLSKAEEILRI 260 (844)
Q Consensus 244 L~~~~~d~~~A~~~Lr~ 260 (844)
|.+++|++.-|+-.+..
T Consensus 253 l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 253 LKESDNDVKLAILMILT 269 (296)
T ss_pred HHHhCCccHHHHHHHHh
Confidence 99999999888886655
No 122
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=96.17 E-value=0.029 Score=60.12 Aligned_cols=188 Identities=19% Similarity=0.136 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCCCC-ChHhHHHHHHHHHHHHhhhc
Q psy3759 43 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT-NFKTIKTSIQRLKEMDLFIT 121 (844)
Q Consensus 43 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lT-N~~~~~~~i~~~~~~~~~~~ 121 (844)
.+.+..|.++...+....+++|+|.|+|.-.-..-.+...++...-|-....+++|.+. .+..+...+..
T Consensus 29 ~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~--------- 99 (257)
T cd05007 29 EAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEG--------- 99 (257)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccc---------
Confidence 34456788888888888899999999998776655544443333222222223444332 22222111100
Q ss_pred cCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCC----CcchHHHHHHhcCCCEEEEecCCCCC--Ccc
Q psy3759 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGI 195 (844)
Q Consensus 122 ~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i 195 (844)
.++.+ .. . .+.+.. .++ ..-|++|++... .-..+++.|++.|.|||+|+....+| ...
T Consensus 100 ---~edd~---~~--~--~~~l~a-----~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~a 163 (257)
T cd05007 100 ---AEDDE---EA--G--AADLQA-----INL-TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLA 163 (257)
T ss_pred ---cCChH---HH--H--HHHHHH-----cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence 00000 00 0 000111 011 357888888754 33467889999999999998544333 235
Q ss_pred eEEccCCC-----------ccchhhhhhhcccccchhc--ch-----hh------hhh--------hcccCcchHHHHHH
Q psy3759 196 NYVIPGND-----------DSAKSIALYTKGIVDAFLD--AK-----TV------GEL--------RSKTLAPIMECKKA 243 (844)
Q Consensus 196 ~ypIP~N~-----------ds~~si~~~~~~l~~ai~~--g~-----~v------~~l--------r~~t~~~~~~ck~a 243 (844)
|++|.... .+..+..+++++|+..+.. |+ ++ .+| .+-||++..+|.++
T Consensus 164 D~~I~~~~g~E~~~~st~~~s~~aqk~vLn~L~t~~~~~~g~v~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~~ 243 (257)
T cd05007 164 DIAIALITGPEVVAGSTRLKAGTAQKLALNMLSTAVMIRLGKVYGNLMVDVRATNEKLRERAIRIVMEATGVSRDEAEAA 243 (257)
T ss_pred CEEEEcCCCCccccCccccccHHHHHHHHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 66664331 2345677788888765432 22 11 233 35589999999999
Q ss_pred HHhccCCHHHHH
Q psy3759 244 LIEANGKLSKAE 255 (844)
Q Consensus 244 L~~~~~d~~~A~ 255 (844)
|.+++|++..|+
T Consensus 244 l~~~~~~~k~a~ 255 (257)
T cd05007 244 LEQAGGDVKTAI 255 (257)
T ss_pred HHHhCCCceeee
Confidence 999999987765
No 123
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=95.84 E-value=0.013 Score=53.99 Aligned_cols=73 Identities=26% Similarity=0.274 Sum_probs=53.4
Q ss_pred CCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHH
Q psy3759 180 IPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR 259 (844)
Q Consensus 180 IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr 259 (844)
=|.|...++... -+|.|.|-..-.....-- ..-.....++.++++||++..+|++||.++|||+-.|+-+|.
T Consensus 42 ~P~V~~m~~~g~---~tY~I~Ge~~~e~~~~~~-----~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~ 113 (115)
T PRK06369 42 NPQVTVMDAQGQ---KTYQIVGEPEEVEKEAEK-----EVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLS 113 (115)
T ss_pred CCeEEEEecCCC---cEEEEEeccEEeeccccc-----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHh
Confidence 467777666433 678888875443211000 123456678999999999999999999999999999999997
Q ss_pred H
Q psy3759 260 I 260 (844)
Q Consensus 260 ~ 260 (844)
+
T Consensus 114 ~ 114 (115)
T PRK06369 114 S 114 (115)
T ss_pred c
Confidence 4
No 124
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=95.32 E-value=0.2 Score=54.70 Aligned_cols=106 Identities=14% Similarity=0.048 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCC--CCcceEEccCC-----------Cccchhhhhhhccccc
Q psy3759 156 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHS--PDGINYVIPGN-----------DDSAKSIALYTKGIVD 218 (844)
Q Consensus 156 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~--~~~i~ypIP~N-----------~ds~~si~~~~~~l~~ 218 (844)
.-|++|++....+ ..+++.|++.|.|+|+|+....+ .+..|++|+.. -.|.-+..+++++|+.
T Consensus 126 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~~aqk~iLd~L~t 205 (291)
T TIGR00274 126 KNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEILTGSSRLKAGTAQKMVLNMLST 205 (291)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccccccchhhHHHHHHHHHHHHHH
Confidence 5688888865533 35778999999999999743322 23466666542 1345566678888877
Q ss_pred ch--hcch-----hh------hh--------hhcccCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759 219 AF--LDAK-----TV------GE--------LRSKTLAPIMECKKALIEANGKLSKAEEILRIK 261 (844)
Q Consensus 219 ai--~~g~-----~v------~~--------lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k 261 (844)
.+ ..|+ +| .+ +.+-||++..+|.++|.+++|++.-|+-.+...
T Consensus 206 ~~~~~~gk~~~n~mvd~~~~N~kl~~Ra~~i~~~~~~~~~~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 206 ASMIKLGKVYENLMVDVQASNEKLKARAVRIVRQATDCNKELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHhcchhhcCeEEeeecccHHHHHHHHHHHHHHhCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 55 2333 21 23 335589999999999999999999999877653
No 125
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=94.84 E-value=0.021 Score=52.52 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=54.8
Q ss_pred cCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHH
Q psy3759 178 LNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEI 257 (844)
Q Consensus 178 l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~ 257 (844)
..-|.|.+.+.-- .-+|-|-|..... .+. ...-.....++.++++||++..+|++||.++|||+-.|+-+
T Consensus 44 f~~p~V~~m~~~G---~~tYqI~G~~~~~-~~~------~~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~ 113 (116)
T TIGR00264 44 FENPKVQVMDILG---VKTYQITGKPKKE-KVE------EEEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMK 113 (116)
T ss_pred EecCeeEEEecCC---cEEEEEecccEEe-ecc------cccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHH
Confidence 5678888887753 3788888876532 100 00124556788999999999999999999999999999998
Q ss_pred HH
Q psy3759 258 LR 259 (844)
Q Consensus 258 Lr 259 (844)
|-
T Consensus 114 L~ 115 (116)
T TIGR00264 114 LE 115 (116)
T ss_pred hh
Confidence 85
No 126
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=94.46 E-value=0.043 Score=40.07 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=24.6
Q ss_pred cCcchHHHHHHHHhccCCHHHHHHHH
Q psy3759 233 TLAPIMECKKALIEANGKLSKAEEIL 258 (844)
Q Consensus 233 t~~~~~~ck~aL~~~~~d~~~A~~~L 258 (844)
.|.+..+|+.||..++||+++|++||
T Consensus 11 mGf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 11 MGFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 38899999999999999999999998
No 127
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=94.11 E-value=0.057 Score=39.63 Aligned_cols=32 Identities=28% Similarity=0.210 Sum_probs=27.5
Q ss_pred hhhhcccCcchHHHHHHHHhccCCHHHHHHHHH
Q psy3759 227 GELRSKTLAPIMECKKALIEANGKLSKAEEILR 259 (844)
Q Consensus 227 ~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr 259 (844)
.+|.. .|.+...|..||..++||+++|++||.
T Consensus 6 ~~L~~-mGf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 6 EQLLE-MGFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 34444 488999999999999999999999985
No 128
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=85.97 E-value=0.72 Score=42.85 Aligned_cols=34 Identities=29% Similarity=0.214 Sum_probs=30.0
Q ss_pred hhhhhhcccCcchHHHHHHHHhccCCHHHHHHHH
Q psy3759 225 TVGELRSKTLAPIMECKKALIEANGKLSKAEEIL 258 (844)
Q Consensus 225 ~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~L 258 (844)
.++-.-++||++..++.|||+|+|||+-.|+--|
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L 120 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKL 120 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHh
Confidence 4566678899999999999999999999998766
No 129
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=84.73 E-value=0.91 Score=34.41 Aligned_cols=36 Identities=19% Similarity=-0.049 Sum_probs=29.5
Q ss_pred hhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHH
Q psy3759 225 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 260 (844)
Q Consensus 225 ~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~ 260 (844)
.+.++..-||+.-..|.+-|+.++||++.|++.--.
T Consensus 3 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 466778889999999999999999999999987544
No 130
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=82.04 E-value=33 Score=34.06 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCC-CC-ChHhHHHHHHHHHHHHhhh
Q psy3759 43 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGL-LT-NFKTIKTSIQRLKEMDLFI 120 (844)
Q Consensus 43 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~-lT-N~~~~~~~i~~~~~~~~~~ 120 (844)
+.-...+.+|...+..-..+|++||..|+--.+.++-.-.++.+|-|....+=+|+. || |...+..--
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~---------- 90 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIA---------- 90 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhh----------
Confidence 455677889999999999999999999988877677665677778776666667764 44 766442221
Q ss_pred ccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcc----hHHHHHHhcCCCEEEEecCCC----CC
Q psy3759 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNH----SP 192 (844)
Q Consensus 121 ~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~i~Dt~~----~~ 192 (844)
.+ |.-.+ .|.|+.+- +.+.-|+++=+.+.-|. .|++.|..+++-||++.-.|- ..
T Consensus 91 ND-----y~yd~--vFsRqveA----------~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~ 153 (176)
T COG0279 91 ND-----YGYDE--VFSRQVEA----------LGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGL 153 (176)
T ss_pred cc-----ccHHH--HHHHHHHh----------cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 11 22211 23443322 23567888888776543 578899999999999975443 22
Q ss_pred CcceEEccCCCc
Q psy3759 193 DGINYVIPGNDD 204 (844)
Q Consensus 193 ~~i~ypIP~N~d 204 (844)
-.+.+.||..+.
T Consensus 154 ~D~~i~VPs~~t 165 (176)
T COG0279 154 LDVEIRVPSTDT 165 (176)
T ss_pred cceEEecCCCcc
Confidence 235556677643
No 131
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=80.54 E-value=14 Score=35.38 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccc-cCCCCCChHhHHHHHHHHHHHHhhhccCc
Q psy3759 46 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGLLTNFKTIKTSIQRLKEMDLFITNGS 124 (844)
Q Consensus 46 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~lTN~~~~~~~i~~~~~~~~~~~~~~ 124 (844)
...+.+|...+.....+||+|.++|+-.-.... ..++.+.+..+-..++ .+...-+-...... -..++ ....
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~---~~~~ 90 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAIA-SHFAADLGGLFGVNRILLPAIALNDDALTAI---SNDLE---YDEG 90 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEESTHHHHHH-HHHHHHHHCHSSSTSSS-SEEETTSTHHHHH---HHHTT---GGGT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHH-HHHHHHHhcCcCCCcccccccccccchHhhh---hcccc---hhhH
Confidence 567899999999999999999999987654333 3444444433333344 33322221100000 01110 0111
Q ss_pred cccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCc-c---hHHHHHHhcCCCEEEEe
Q psy3759 125 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH-K---GAVSEAIKLNIPIIGVV 186 (844)
Q Consensus 125 ~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~-~---~ai~Ea~~l~IP~i~i~ 186 (844)
+-+ .+...+.+ +.-|++|+++..-+ . .|+.+|++.|.+||+|.
T Consensus 91 -----------~~~---~~~~~~~~-----~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 91 -----------FAR---QLLALYDI-----RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp -----------HHH---HHHHHTT-------TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred -----------HHH---HHHHHcCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 111 12222221 46799998865433 2 36789999999999984
No 132
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=79.56 E-value=16 Score=37.22 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=34.3
Q ss_pred CCCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCC--CcceEEccCCC
Q psy3759 155 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGND 203 (844)
Q Consensus 155 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP~N~ 203 (844)
+..|++|+++...+ ..+++.|+..|+|||+|+....+| +..|+.|....
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 46789998875532 357788899999999998765444 34566665555
No 133
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=77.12 E-value=16 Score=36.49 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=32.5
Q ss_pred CCCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCC--cceEEcc
Q psy3759 155 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 200 (844)
Q Consensus 155 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~--~i~ypIP 200 (844)
+..|++|+++...+ ..+++.|+..|+|||+|++...+|- ..|+.|.
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~ 151 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIH 151 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 46799998875433 3577889999999999998765542 3444443
No 134
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=75.16 E-value=26 Score=38.75 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=31.3
Q ss_pred CCCEEEEeCCC----CcchHHHHHHhcCCCEEEEecCCCCCC--cceEEc
Q psy3759 156 IPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSPD--GINYVI 199 (844)
Q Consensus 156 ~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~i~Dt~~~~~--~i~ypI 199 (844)
..|++|+++.. +-..+++.|+..|+|||+|++...+|- .-||.+
T Consensus 94 ~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l 143 (326)
T PRK10892 94 PQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHL 143 (326)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEE
Confidence 46888888754 334578889999999999998765442 344444
No 135
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=74.30 E-value=1.9 Score=34.03 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=31.6
Q ss_pred hhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759 225 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 261 (844)
Q Consensus 225 ~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k 261 (844)
++.++...||--..=|.+-|++++||++.|+....+-
T Consensus 3 mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l 39 (51)
T PF03943_consen 3 MVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEEL 39 (51)
T ss_dssp HHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5778899999999999999999999999999988864
No 136
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=73.99 E-value=19 Score=35.92 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCC
Q psy3759 156 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD 193 (844)
Q Consensus 156 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~ 193 (844)
..|++|+++...+ ..+++.|+..|+|||+|+|...+|-
T Consensus 72 ~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~l 113 (179)
T TIGR03127 72 KGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTL 113 (179)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 5788888875432 3456678999999999999776553
No 137
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.82 E-value=13 Score=33.38 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=21.6
Q ss_pred eEEEEecccchHHHHHHHHHHcCCccc
Q psy3759 65 TLLFVGTKRQARGVIANEAVRAGMPFI 91 (844)
Q Consensus 65 ~iLfv~t~~~~~~~v~~~a~~~~~~~v 91 (844)
+||+||.......-++...++.|...+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~ 27 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLI 27 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEE
Confidence 478999977777777888888888765
No 138
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=73.39 E-value=30 Score=37.30 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=34.4
Q ss_pred CCCCEEEEeCCCCcc----hHHHHHHhcCCCEEEEecCCCCCC--cceEEcc
Q psy3759 155 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 200 (844)
Q Consensus 155 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~i~Dt~~~~~--~i~ypIP 200 (844)
...|++|+++...+. .+++.|+..|+|||+|+|...+|- ..|+.++
T Consensus 174 ~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~ 225 (278)
T PRK11557 174 SPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLY 225 (278)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEE
Confidence 368999988755332 578899999999999999876553 4566664
No 139
>PRK13938 phosphoheptose isomerase; Provisional
Probab=73.19 E-value=34 Score=35.10 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=35.9
Q ss_pred CCCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCC--CcceEEccCCCccc
Q psy3759 155 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSA 206 (844)
Q Consensus 155 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP~N~ds~ 206 (844)
...|++|+++...+ ..+++.|+..|+|||+|++...+| +.-|+.|...++..
T Consensus 112 ~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~e~ 169 (196)
T PRK13938 112 RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSRDT 169 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCCch
Confidence 56899999876533 367788899999999999766544 33566554444333
No 140
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=71.88 E-value=17 Score=36.43 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=33.5
Q ss_pred CCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCC----cceEEccCCC
Q psy3759 156 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD----GINYVIPGND 203 (844)
Q Consensus 156 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~----~i~ypIP~N~ 203 (844)
.-|++|+++...+ ..+++.|+..|+|+|+|+|+..+|- .+.+++|.+.
T Consensus 75 ~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 130 (179)
T cd05005 75 PGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAAT 130 (179)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 5788888875422 3477888999999999999876553 2444555543
No 141
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=71.33 E-value=5.3 Score=33.09 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=33.2
Q ss_pred hhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHH
Q psy3759 224 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 260 (844)
Q Consensus 224 ~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~ 260 (844)
.++.++..+||--..=|.+.|+++|||++.|.....+
T Consensus 14 ~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 14 EMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4577788999999999999999999999999998876
No 142
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=71.18 E-value=51 Score=35.19 Aligned_cols=194 Identities=18% Similarity=0.153 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCCCCChHh-HHHHHHHHHHHHhhh
Q psy3759 42 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKT-IKTSIQRLKEMDLFI 120 (844)
Q Consensus 42 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~-~~~~i~~~~~~~~~~ 120 (844)
+++.+..+..|...+..-.++||+..++|--...+--|..+++-..-|-+...-+=|.+---.. +.+...
T Consensus 39 V~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~avE--------- 109 (298)
T COG2103 39 VEAALPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAILKAVE--------- 109 (298)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHHHhhc---------
Confidence 4677888899999999999999999999977766666666555444444333333343333221 111110
Q ss_pred ccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeC----CCCcchHHHHHHhcCCCEEEE-ecCCCCCC-c
Q psy3759 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID----VGYHKGAVSEAIKLNIPIIGV-VDTNHSPD-G 194 (844)
Q Consensus 121 ~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~----~~~~~~ai~Ea~~l~IP~i~i-~Dt~~~~~-~ 194 (844)
| .++-.+ +-+ .--+.. ++ ..-|+||=+- ..+=.-++++|++.|..||+| |+-++..+ .
T Consensus 110 --G-aED~~~-----~g~---~dl~~~-~l----t~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~ 173 (298)
T COG2103 110 --G-AEDDEE-----LGE---ADLKNI-GL----TAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRI 173 (298)
T ss_pred --C-ccccHH-----HHH---HHHHHc-CC----CcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhh
Confidence 1 000000 000 000000 11 2356666554 234556899999999999999 56665433 3
Q ss_pred ceEEccC---------C--Cccchhhhhhhcccccchh--cch-------------------hhhhhhcccCcchHHHHH
Q psy3759 195 INYVIPG---------N--DDSAKSIALYTKGIVDAFL--DAK-------------------TVGELRSKTLAPIMECKK 242 (844)
Q Consensus 195 i~ypIP~---------N--~ds~~si~~~~~~l~~ai~--~g~-------------------~v~~lr~~t~~~~~~ck~ 242 (844)
.||||-- . =++-.+-.+++++|+.+.. -|+ .++=+..-|++...++.+
T Consensus 174 Ad~~I~~~vGPEvltGSTRlKaGTAQKlvLNMlST~~Mi~lGKvy~NlMVDv~atN~KL~dRa~RIv~~aT~~~~~~A~~ 253 (298)
T COG2103 174 ADIAIEPVVGPEVLTGSTRLKAGTAQKLVLNMLSTGVMIKLGKVYGNLMVDVKATNEKLRDRAVRIVMEATGCSAEEAEA 253 (298)
T ss_pred cCcceeeccCccccccccccccchHHHHHHHHHHHHHHHHhcccccceEEEeecchHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5666532 1 2345567889999987542 222 222233568999999999
Q ss_pred HHHhccCCHHHHHHHHHH
Q psy3759 243 ALIEANGKLSKAEEILRI 260 (844)
Q Consensus 243 aL~~~~~d~~~A~~~Lr~ 260 (844)
+|.++++++.-|+-.+..
T Consensus 254 ~L~~~~~~vK~AIvm~~~ 271 (298)
T COG2103 254 LLEEAGGNVKLAIVMLLT 271 (298)
T ss_pred HHHHcCCccHhHHHHHHh
Confidence 999999999999877654
No 143
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=70.82 E-value=56 Score=33.51 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEecccc
Q psy3759 46 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQ 74 (844)
Q Consensus 46 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~ 74 (844)
...|.+|...+.....++++|+|+|.-..
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgS 52 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTS 52 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHH
Confidence 46789999999999999999999997654
No 144
>PRK15482 transcriptional regulator MurR; Provisional
Probab=67.44 E-value=32 Score=37.21 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=32.4
Q ss_pred CCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCC--cceEEccC
Q psy3759 156 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPG 201 (844)
Q Consensus 156 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~--~i~ypIP~ 201 (844)
.-|++|+++...+ ..+++.|+..|.|||+|+|...+|- ..||.|+.
T Consensus 182 ~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~ 233 (285)
T PRK15482 182 KGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDT 233 (285)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEc
Confidence 4588888875433 3567788899999999999876553 34555443
No 145
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=64.71 E-value=35 Score=37.15 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCcccc
Q psy3759 48 MYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 127 (844)
Q Consensus 48 ~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~ 127 (844)
++.|++.+...+ + |-.+.|+...+.. ..+..........-+.-.+..|.+-.|.++......+.
T Consensus 14 H~~R~~~la~~L-r-g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 77 (318)
T PF13528_consen 14 HASRCLALARAL-R-GHEVTFITSGPAP-EFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWLA------------- 77 (318)
T ss_pred HHHHHHHHHHHH-c-cCceEEEEcCCcH-HHhccccCEEEccCceEeccCCccchHHHHHHHHHhhH-------------
Confidence 556777777777 3 6678887766554 33322111111111111234455555555543332110
Q ss_pred CChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCC
Q psy3759 128 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHS 191 (844)
Q Consensus 128 ~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~ 191 (844)
.+.+...++.+.+.. ..||+|| +| .+..+..-|...+||+|++.|-...
T Consensus 78 -------~~~~~~~~~~~~l~~-----~~pDlVI-sD--~~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 78 -------RLARRIRREIRWLRE-----FRPDLVI-SD--FYPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred -------HHHHHHHHHHHHHHh-----cCCCEEE-Ec--ChHHHHHHHHhcCCCEEEEEehHHc
Confidence 112222223333322 2599887 44 3445677889999999999776544
No 146
>PRK13936 phosphoheptose isomerase; Provisional
Probab=63.50 E-value=1.3e+02 Score=30.61 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=34.2
Q ss_pred CCCCEEEEeCCCCcch----HHHHHHhcCCCEEEEecCCCCC-Cc----ceEEccCCCcc
Q psy3759 155 IIPDAIFIIDVGYHKG----AVSEAIKLNIPIIGVVDTNHSP-DG----INYVIPGNDDS 205 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~----ai~Ea~~l~IP~i~i~Dt~~~~-~~----i~ypIP~N~ds 205 (844)
+.-|++|+++...+.. +++.|++.|+|+|+|++.+.+| .. -|+.|....+.
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 4578888887554333 6788999999999999855432 22 45555555444
No 147
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=60.58 E-value=15 Score=38.95 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=34.2
Q ss_pred CCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCC
Q psy3759 155 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGN 202 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N 202 (844)
..||.+|+.++..+..+++++...|||+|.+ |++.+.....|.-+-|
T Consensus 63 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~d~ 109 (275)
T cd06295 63 GRADGVILIGQHDQDPLPERLAETGLPFVVW-GRPLPGQPYCYVGSDN 109 (275)
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCccCCCCCCEEEECc
Confidence 3699999987766667789999999999976 7665433445544433
No 148
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=59.56 E-value=68 Score=27.24 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 761 IPPLTKERREEIVKLIKNITEETKISIRKIRRD 793 (844)
Q Consensus 761 iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~ 793 (844)
=|+.-+|.|+++...+....++.+....+++..
T Consensus 20 aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~ 52 (74)
T PF12732_consen 20 APKSGKETREKLKDKAEDLKDKAKDLYEEAKEK 52 (74)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888888777666666555555444
No 149
>PRK02947 hypothetical protein; Provisional
Probab=58.71 E-value=59 Score=34.57 Aligned_cols=30 Identities=23% Similarity=0.133 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEecccch
Q psy3759 46 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQA 75 (844)
Q Consensus 46 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~ 75 (844)
...|.+|...+.....++++|.|+|.....
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~G~G~S~ 52 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVFGTGHSH 52 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 356889999999998999999999987643
No 150
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=55.00 E-value=44 Score=34.21 Aligned_cols=63 Identities=27% Similarity=0.311 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHH--HHHHHHHHH
Q psy3759 775 LIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFIL--EINQLLINK 837 (844)
Q Consensus 775 ~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~--~id~~~~~k 837 (844)
....++.++|-..-..|.+..+.++....+...|++..+.+.+++.+|++...+ .|+.++++|
T Consensus 83 ~~~~~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~kE~~iE~llkak 147 (196)
T PF12685_consen 83 SGSDYFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKMEKEMEIENLLKAK 147 (196)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334579999999999999999999999999999999999999999999987655 467777665
No 151
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=52.30 E-value=30 Score=38.92 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=33.9
Q ss_pred C-CeEEEEeccc----chHHHHHHHHHHcCCccccccccC-CCCCChHhHHHHH
Q psy3759 63 K-GTLLFVGTKR----QARGVIANEAVRAGMPFIDQRWLG-GLLTNFKTIKTSI 110 (844)
Q Consensus 63 ~-~~iLfv~t~~----~~~~~v~~~a~~~~~~~v~~rw~~-G~lTN~~~~~~~i 110 (844)
| +++.|||++. ..+.+++.+.+..|..-+.++++| |. |+|..+=..|
T Consensus 133 G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~-td~~~ii~~I 185 (363)
T PF13433_consen 133 GAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGA-TDFDPIIAEI 185 (363)
T ss_dssp --SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-H-HHHHHHHHHH
T ss_pred CCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCc-hhHHHHHHHH
Confidence 6 8999999996 457788888888898889999987 54 8887664333
No 152
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=52.10 E-value=18 Score=35.49 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=33.4
Q ss_pred eecccccccCCCCCC--CCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHH
Q psy3759 578 ATKVDGIYNSDPNKC--LSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR 642 (844)
Q Consensus 578 lTDVdGVyt~dP~~~--~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~ 642 (844)
.+|||||+|+ ++.. ++.+.+...+. .|=...+...++|+++-|+.|++...+.+
T Consensus 12 i~DVDGvLTD-G~ly~~~~Gee~KaFnv----------~DG~Gik~l~~~Gi~vAIITGr~s~ive~ 67 (170)
T COG1778 12 ILDVDGVLTD-GKLYYDENGEEIKAFNV----------RDGHGIKLLLKSGIKVAIITGRDSPIVEK 67 (170)
T ss_pred EEeccceeec-CeEEEcCCCceeeeeec----------cCcHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 5699999985 2211 12222222221 22235667788999999999998766554
No 153
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=50.46 E-value=7 Score=34.88 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=26.1
Q ss_pred chHHHHHHHHhccCCHHHHHHHHHHHhh
Q psy3759 236 PIMECKKALIEANGKLSKAEEILRIKLG 263 (844)
Q Consensus 236 ~~~~ck~aL~~~~~d~~~A~~~Lr~kg~ 263 (844)
.+-||.+|=+|--.++++|.+.||+||.
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~kGv 89 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRKKGV 89 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5779999999999999999999999986
No 154
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=49.65 E-value=86 Score=30.79 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 767 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 767 E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
+.|++.+..--..+++.+......+.++.+.++..++.. .+-++-....++..+.+.++.-++++.+.+..+++|
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i 127 (156)
T CHL00118 52 DERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544444566666666666666655555543211 233333444555555555556666666665555544
No 155
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=49.26 E-value=2.2e+02 Score=31.57 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=30.9
Q ss_pred CCCCEEEEeCCCCc--chHHHHHHhcCCCEEEEecCCCCCCcceEEc
Q psy3759 155 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVI 199 (844)
Q Consensus 155 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypI 199 (844)
+-+|.|++.....+ ..++++|...|||+|.+ |++.+++...+.|
T Consensus 79 ~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~-d~~~~~~~~~~~V 124 (336)
T PRK15408 79 QGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTW-DSDTKPECRSYYI 124 (336)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEe-CCCCCCccceEEE
Confidence 35999998754444 57899999999999985 5554444334433
No 156
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=48.58 E-value=8 Score=33.51 Aligned_cols=34 Identities=29% Similarity=0.161 Sum_probs=25.9
Q ss_pred chHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhc
Q psy3759 236 PIMECKKALIEANGKLSKAEEILRIKLGKKILNI 269 (844)
Q Consensus 236 ~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk 269 (844)
+-.+-+.||-.++-|+++|+.||+++-.++..|+
T Consensus 45 ~e~~i~eal~~~~fDvekAl~~Ll~~~~~~~~~~ 78 (79)
T PF08938_consen 45 PEEQIKEALWHYYFDVEKALDYLLSKFKKKKPKK 78 (79)
T ss_dssp -CCHHHHHHHHTTT-CCHHHHHHHHCCHSSS---
T ss_pred CHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC
Confidence 7789999999999999999999999865554443
No 157
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=48.40 E-value=30 Score=34.56 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=38.5
Q ss_pred eecccccccCCCC-CCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcC
Q psy3759 578 ATKVDGIYNSDPN-KCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEG 646 (844)
Q Consensus 578 lTDVdGVyt~dP~-~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~G 646 (844)
.+|||||+|+.-- .+++.+.....+ ..|..+...+.+.|+++.|+++.....+...+.-
T Consensus 11 v~d~dGv~tdg~~~~~~~g~~~~~~~----------~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~ 70 (169)
T TIGR02726 11 ILDVDGVMTDGRIVINDEGIESRNFD----------IKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEE 70 (169)
T ss_pred EEeCceeeECCeEEEcCCCcEEEEEe----------cchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHH
Confidence 5699999986421 112333333333 2345678888899999999998877766666653
No 158
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=48.15 E-value=28 Score=26.02 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=26.6
Q ss_pred hhhhhccc-CcchHHHHHHHHhccCCHHHHHHHHHH
Q psy3759 226 VGELRSKT-LAPIMECKKALIEANGKLSKAEEILRI 260 (844)
Q Consensus 226 v~~lr~~t-~~~~~~ck~aL~~~~~d~~~A~~~Lr~ 260 (844)
+..|+... ..+...-+.+|.+++||+|.|++.|-+
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 44455544 367788899999999999999998864
No 159
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=47.59 E-value=97 Score=37.86 Aligned_cols=47 Identities=26% Similarity=0.191 Sum_probs=34.4
Q ss_pred CCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCC--CcceEEccCC
Q psy3759 156 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGN 202 (844)
Q Consensus 156 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP~N 202 (844)
..|++|++...-+ ..+++.|+..|+|||+|++...+| +..|+.|+.+
T Consensus 369 ~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ 421 (640)
T PTZ00295 369 EDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLN 421 (640)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeC
Confidence 4578888875533 457888899999999998776555 4567777654
No 160
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=47.58 E-value=58 Score=37.01 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCC
Q psy3759 155 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTN 189 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~ 189 (844)
..||+|+.+.|......++.+..++||++.+ -||
T Consensus 103 ~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v-~td 136 (391)
T PRK13608 103 EKPDLILLTFPTPVMSVLTEQFNINIPVATV-MTD 136 (391)
T ss_pred hCcCEEEECCcHHHHHHHHHhcCCCCCEEEE-eCC
Confidence 3799999988876655666777889999765 344
No 161
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=47.53 E-value=1.6e+02 Score=31.90 Aligned_cols=46 Identities=28% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCC--cceEEcc
Q psy3759 155 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 200 (844)
Q Consensus 155 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~--~i~ypIP 200 (844)
...|++|++....+ ..+++.|+..|+|||+|+|...+|- ..|+.|+
T Consensus 186 ~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 237 (292)
T PRK11337 186 QEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVIC 237 (292)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 35788888764432 3466778899999999999887663 3455443
No 162
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=47.00 E-value=90 Score=29.75 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=28.2
Q ss_pred CCCEEEEeCCCCc-----chHHHHHHhcCCCEEEEecCCCCCCcceEEc
Q psy3759 156 IPDAIFIIDVGYH-----KGAVSEAIKLNIPIIGVVDTNHSPDGINYVI 199 (844)
Q Consensus 156 ~P~~vii~~~~~~-----~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypI 199 (844)
..+++|++++..+ ..+++.+++.+.|+|+|.+.+.+....|+.|
T Consensus 61 ~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it~~~~s~~~~d~~i 109 (153)
T cd05009 61 EGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDGDAKDLADVVI 109 (153)
T ss_pred CCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEecCCcccccCCeEE
Confidence 4566777764322 2477888999999999977653333334433
No 163
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=46.97 E-value=30 Score=32.19 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=35.0
Q ss_pred CCCEEEEeCCC----CcchHHHHHHhcCCCEEEEecCCCCC--CcceEEccCCCc
Q psy3759 156 IPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDD 204 (844)
Q Consensus 156 ~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP~N~d 204 (844)
..|++|++... +-..+++.|++.|.|+|+|++...+| +..|+.++....
T Consensus 47 ~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 47 EKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 46888888755 33457788889999999999876554 235666666544
No 164
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=46.43 E-value=1.2e+02 Score=33.72 Aligned_cols=93 Identities=15% Similarity=0.051 Sum_probs=52.1
Q ss_pred CCEEEEeCCC----CcchHHHHHHhcCCCEEEEecCCCCC--CcceEEccCCCccchhhh-hhhcccccchhcchhhhhh
Q psy3759 157 PDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAKSIA-LYTKGIVDAFLDAKTVGEL 229 (844)
Q Consensus 157 P~~vii~~~~----~~~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP~N~ds~~si~-~~~~~l~~ai~~g~~v~~l 229 (844)
-|++|+++.. +-..+++.|+..|.|||+|++...+| ...||.|+.+-.+..... +.+..+.-....+..
T Consensus 93 ~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag~~~~~~~~~~~~~~~~~~~~~~---- 168 (340)
T PRK11382 93 RCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVVLEMITRLA---- 168 (340)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCCchHHHHHHHHHHHHHHHHhcCC----
Confidence 4677777654 23457788888999999998775555 467888888743311111 111111111111110
Q ss_pred hcccCcchHHHHHHHHhccCCHHHHHH
Q psy3759 230 RSKTLAPIMECKKALIEANGKLSKAEE 256 (844)
Q Consensus 230 r~~t~~~~~~ck~aL~~~~~d~~~A~~ 256 (844)
......++.++|......++++++
T Consensus 169 ---~~~~~~~~~~~l~~l~~~i~~~~~ 192 (340)
T PRK11382 169 ---PNAEIGKIKNDLKQLPNALGHLVR 192 (340)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345666677766666666665
No 165
>PRK10780 periplasmic chaperone; Provisional
Probab=46.13 E-value=1.8e+02 Score=28.72 Aligned_cols=87 Identities=14% Similarity=0.235 Sum_probs=58.7
Q ss_pred CeeEEeCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHH
Q psy3759 755 NIIYVSIPPLTKE--RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEIN 831 (844)
Q Consensus 755 ~~i~v~iP~~T~E--~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id 831 (844)
..-.|.+..+-.+ ..+..-+.+.+.+......+...+.+..+...++++++ .+|+++....+++|+....+|-.+..
T Consensus 25 KIg~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~ 104 (165)
T PRK10780 25 KIAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQ 104 (165)
T ss_pred CeEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544443222 24455677778888888899999999888888887665 58999988888888777666665554
Q ss_pred ---HHHHHHHhhh
Q psy3759 832 ---QLLINKEKEI 841 (844)
Q Consensus 832 ---~~~~~kekel 841 (844)
.-+..++.|+
T Consensus 105 ~~qq~~~~~~~e~ 117 (165)
T PRK10780 105 AFEQDRRRRSNEE 117 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 2333444444
No 166
>PRK01919 tatB sec-independent translocase; Provisional
Probab=45.47 E-value=1.7e+02 Score=29.14 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 766 KERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 766 ~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
.|+-=++++.+-+..-++|..+.+++.+..+++ ..||.++..+++|+..++....+.+-+..-++++
T Consensus 22 PekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~---------e~dElrk~~~~~e~~~~~v~~si~~~~~~~~~~~ 88 (169)
T PRK01919 22 PERLPRVARTAGALFGRAQRYINDVKAEVSREI---------ELDELRKMKTDFESAARDVENTIHDNLSEHESDL 88 (169)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 355556667777777777777777776665543 2366677777777666666666666666666654
No 167
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=44.84 E-value=1.5e+02 Score=35.77 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=69.0
Q ss_pred eHHHHHHHHHHHHHHHHhhccCCCeEEEEeccc----chHHHHHHHHHHcCC----ccccccccCCCCCChHhHHHHHHH
Q psy3759 41 NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKR----QARGVIANEAVRAGM----PFIDQRWLGGLLTNFKTIKTSIQR 112 (844)
Q Consensus 41 nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~----~~~~~v~~~a~~~~~----~~v~~rw~~G~lTN~~~~~~~i~~ 112 (844)
|+ ..+.-+.+|...|.....++.+|+++|--. .+..++.++.++.|. +||-+|...|-=-|...+ .+
T Consensus 48 ~P-~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i----~~ 122 (575)
T PRK11070 48 PW-QQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVV----DQ 122 (575)
T ss_pred Ch-HHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHH----HH
Confidence 54 456778889999988889999999998654 245555667777776 455555444433332221 11
Q ss_pred HHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCC-CcchHHHHHHhcCCCEEEEecCC
Q psy3759 113 LKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG-YHKGAVSEAIKLNIPIIGVVDTN 189 (844)
Q Consensus 113 ~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~-~~~~ai~Ea~~l~IP~i~i~Dt~ 189 (844)
+.. .-++++|.+|.. .+..++..|+.+||.+|- +|=.
T Consensus 123 ------------------------------~~~---------~~~~LiItvD~Gi~~~e~i~~a~~~gidvIV-tDHH 160 (575)
T PRK11070 123 ------------------------------AHA---------RGAQLIVTVDNGISSHAGVAHAHALGIPVLV-TDHH 160 (575)
T ss_pred ------------------------------HHh---------cCCCEEEEEcCCcCCHHHHHHHHHCCCCEEE-ECCC
Confidence 111 247899999876 556689999999999874 3543
No 168
>PRK13937 phosphoheptose isomerase; Provisional
Probab=44.21 E-value=1.8e+02 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEecccch
Q psy3759 46 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQA 75 (844)
Q Consensus 46 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~ 75 (844)
...|.+|+.-+.....++++|.|+|.....
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~ 50 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSA 50 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhH
Confidence 467888888888888999999999986644
No 169
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=42.31 E-value=36 Score=41.20 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=54.9
Q ss_pred CCCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCC--CcceEEccCCCccch---------hhhhhhcccccc
Q psy3759 155 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAK---------SIALYTKGIVDA 219 (844)
Q Consensus 155 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP~N~ds~~---------si~~~~~~l~~a 219 (844)
...|++|+++..-+ ..+++.|+..|+|||+|++...+| ...|+.|+.+..... +.-+++.+|.-.
T Consensus 335 ~~~dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~ 414 (604)
T PRK00331 335 SPKTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALA 414 (604)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcCccchhhhHHHHHHHHHHHHHHHH
Confidence 34678888865533 357788888999999998865555 356777775532222 222222222221
Q ss_pred hhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHH
Q psy3759 220 FLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEI 257 (844)
Q Consensus 220 i~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~ 257 (844)
+... ....+.....++.++|.+....++++++.
T Consensus 415 ~~~~-----~g~~~~~~~~~~~~~l~~l~~~~~~~~~~ 447 (604)
T PRK00331 415 LAKA-----RGTLSAEEEADLVHELRELPALIEQVLDL 447 (604)
T ss_pred HHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1110 01112234556777777776667776553
No 170
>PRK06904 replicative DNA helicase; Validated
Probab=41.72 E-value=2e+02 Score=33.77 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=49.2
Q ss_pred CCCcCccccccCCeeEe-----eHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH-HHHcCCccccccccC
Q psy3759 24 PKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE-AVRAGMPFIDQRWLG 97 (844)
Q Consensus 24 p~m~~yi~g~r~~~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~-a~~~~~~~v~~rw~~ 97 (844)
+.+..++.|.+.|--|+ ..-||...|.-|.+.... ++..++|++.--....++..+ |..++..+- ++..
T Consensus 209 ~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~--~i~~ 283 (472)
T PRK06904 209 TDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFSLEMPAEQIMMRMLASLSRVDQT--KIRT 283 (472)
T ss_pred HHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEeccCCHHHHHHHHHHhhCCCCHH--Hhcc
Confidence 34555667877774444 788999888777665432 477899998777777777654 444555542 5666
Q ss_pred C-CCCC
Q psy3759 98 G-LLTN 102 (844)
Q Consensus 98 G-~lTN 102 (844)
| .||+
T Consensus 284 g~~l~~ 289 (472)
T PRK06904 284 GQNLDQ 289 (472)
T ss_pred CCCCCH
Confidence 7 7775
No 171
>PRK09165 replicative DNA helicase; Provisional
Probab=41.54 E-value=2.9e+02 Score=32.69 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=57.8
Q ss_pred CCCcCccccccCCeeEe-----eHHHHHHHHHHHHHHHHhhc-----------cCCCeEEEEecccchHHHHHHH-HHHc
Q psy3759 24 PKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLG-----------FSKGTLLFVGTKRQARGVIANE-AVRA 86 (844)
Q Consensus 24 p~m~~yi~g~r~~~~Ii-----nl~~T~~~L~~a~~~i~~~~-----------~~~~~iLfv~t~~~~~~~v~~~-a~~~ 86 (844)
|.+...+-|.+.|--|+ ..-||...|.-|.+...... .+|..++|++.--....++..+ |..+
T Consensus 205 ~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s 284 (497)
T PRK09165 205 RDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQS 284 (497)
T ss_pred HHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhc
Confidence 34556666777764444 77899999998888765431 2478899999777777776654 5566
Q ss_pred CCccccccccCCCCCC--hHhHHHHHHHH
Q psy3759 87 GMPFIDQRWLGGLLTN--FKTIKTSIQRL 113 (844)
Q Consensus 87 ~~~~v~~rw~~G~lTN--~~~~~~~i~~~ 113 (844)
+..+- ++..|.|++ |..+.....++
T Consensus 285 ~v~~~--~i~~~~l~~~e~~~l~~a~~~l 311 (497)
T PRK09165 285 EISSS--KIRRGKISEEDFEKLVDASQEL 311 (497)
T ss_pred CCCHH--HHhcCCCCHHHHHHHHHHHHHH
Confidence 76542 467888885 44444444433
No 172
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.48 E-value=43 Score=34.88 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccc
Q psy3759 155 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 217 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~ 217 (844)
+.+|.+|+.....+...++++...|||+|.+ |++.+...++|..+- ...+.+..+..|.
T Consensus 53 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~d---~~~~g~~~~~~l~ 111 (266)
T cd06278 53 YRVDGVIVTSGTLSSELAEECRRNGIPVVLI-NRYVDGPGVDAVCSD---NYEAGRLAAELLL 111 (266)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhcCCCEEEE-CCccCCCCCCEEEEC---hHHHHHHHHHHHH
Confidence 3689999886655666788999999999987 555444455554443 3334444444443
No 173
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.29 E-value=1.3e+02 Score=30.43 Aligned_cols=23 Identities=4% Similarity=0.144 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy3759 778 NITEETKISIRKIRRDSNENLKK 800 (844)
Q Consensus 778 ~~~e~~k~~iR~iR~~~~~~~kk 800 (844)
+.-+++...+++.|.++.+.+..
T Consensus 83 ~~~~eye~~L~~Ar~EA~~ii~~ 105 (181)
T PRK13454 83 EAEKAYNKALADARAEAQRIVAE 105 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 174
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=40.79 E-value=1.2e+02 Score=30.67 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=15.8
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEE
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 185 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i 185 (844)
.|+++|++...==...+++|.+.|||++-+
T Consensus 95 ~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 95 RPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp --SEEEEES----HHHHHH-----S-EEEE
T ss_pred CCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 699999998777778999999999998654
No 175
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=40.45 E-value=81 Score=31.94 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=19.4
Q ss_pred CCCEEEEeCCC----C---cchHHHHHHhcCCCEEEEe
Q psy3759 156 IPDAIFIIDVG----Y---HKGAVSEAIKLNIPIIGVV 186 (844)
Q Consensus 156 ~P~~vii~~~~----~---~~~ai~Ea~~l~IP~i~i~ 186 (844)
.||.||+..-. + ....++ ....++|++|||
T Consensus 43 ~~~~iilsgGP~~~~~~~~~~~~i~-~~~~~~PiLGIC 79 (191)
T PRK06774 43 APSHLVISPGPCTPNEAGISLAVIR-HFADKLPILGVC 79 (191)
T ss_pred CCCeEEEcCCCCChHhCCCchHHHH-HhcCCCCEEEEC
Confidence 58998887522 1 223343 345689999997
No 176
>PLN02335 anthranilate synthase
Probab=40.16 E-value=78 Score=33.06 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=27.0
Q ss_pred hccCCCeEEEEecccchHHHHHHHHHHcCCccccccc
Q psy3759 59 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW 95 (844)
Q Consensus 59 ~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw 95 (844)
-..++++||+|.....+...+.....+.|.....-+|
T Consensus 14 ~~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 14 SSKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRN 50 (222)
T ss_pred ccCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEEC
Confidence 3567899999998777777777777777876544343
No 177
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=39.95 E-value=2.4e+02 Score=31.53 Aligned_cols=32 Identities=34% Similarity=0.395 Sum_probs=25.3
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCC
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNH 190 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~ 190 (844)
.||++|-.. ...|.+=|.-+|||+|.++||..
T Consensus 83 ~pDv~is~~---s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 83 KPDVAISFG---SPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred CCCEEEecC---cHHHHHHHHHhCCCeEEEecCch
Confidence 699888443 34577788999999999999853
No 178
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.17 E-value=28 Score=37.38 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=27.8
Q ss_pred CCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCC
Q psy3759 157 PDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHS 191 (844)
Q Consensus 157 P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~ 191 (844)
.+++|.+.-..-..|-.=-.+++||+|||.|.|||
T Consensus 267 ~~lvvTvGDDTT~vagdIl~RfgipiiGItDgD~D 301 (367)
T COG4069 267 AGLVVTVGDDTTEVAGDILYRFGIPIIGITDGDCD 301 (367)
T ss_pred CceEEEEcCcchhHHHHHHHhcCCcEEecccCChH
Confidence 45777776666666666778999999999999997
No 179
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.99 E-value=63 Score=30.00 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=33.0
Q ss_pred CCCEEEEeCCCCcc----hHHHHHHhcCCCEEEEecCCCCCC--cceEEccCC
Q psy3759 156 IPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPGN 202 (844)
Q Consensus 156 ~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~i~Dt~~~~~--~i~ypIP~N 202 (844)
..|++|+++...+. .+++.|+..|+|+|+|.+...+|- ..|+.|+..
T Consensus 60 ~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~ 112 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVS 112 (139)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcC
Confidence 57888888866443 367889999999999988665432 355555443
No 180
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=38.56 E-value=47 Score=34.68 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=36.0
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhccc
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 216 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l 216 (844)
.+|.+|+..+..+...+.++...+||+|.+ |+...+...+|.-+ |...+.+.....+
T Consensus 59 ~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~l 115 (268)
T cd06271 59 LVDGVIISRTRPDDPRVALLLERGFPFVTH-GRTELGDPHPWVDF---DNEAAAYQAVRRL 115 (268)
T ss_pred CCCEEEEecCCCCChHHHHHHhcCCCEEEE-CCcCCCCCCCeEee---CcHHHHHHHHHHH
Confidence 589999877655556678899999999976 65543333444433 2334444444433
No 181
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=38.46 E-value=1.6e+02 Score=28.83 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 768 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 768 ~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
.|++.+..--..+++.+......+.++.+.+...++.. .+-++-....++..+.+.++.-++++.+.+..+++|
T Consensus 36 ~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i 110 (159)
T PRK13461 36 SRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEA 110 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333355555555555555555554442211 123333444555566666666666666666555544
No 182
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=38.40 E-value=3.2e+02 Score=29.43 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=36.4
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCc
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDD 204 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~d 204 (844)
.||++|+-...-+....+-....+.+++.|=|...-+-..|+.|-+|-.
T Consensus 80 ~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~~ 128 (279)
T TIGR03590 80 KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNLG 128 (279)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCCC
Confidence 5999998877656555555556677888888877667788898888753
No 183
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=38.00 E-value=53 Score=30.51 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=33.0
Q ss_pred CCCCEEEEeCCC----CcchHHHHHHhcCCCEEEEecCCCCCC--cceEEccC
Q psy3759 155 IIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPG 201 (844)
Q Consensus 155 ~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~i~Dt~~~~~--~i~ypIP~ 201 (844)
..-|++|+++.. +-..+++.|+..|+|||+|++...+|- .-|+.|+.
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~ 98 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDL 98 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEEC
Confidence 356888888744 234578889999999999998765442 35555543
No 184
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=37.84 E-value=1.4e+02 Score=32.28 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCCchhhhhHHHHHHHHHHHHHHH
Q psy3759 763 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK----ILSVDNEYRAQYDIQKLTDKFILE 829 (844)
Q Consensus 763 ~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~----~~s~D~~~~~~~~iq~l~~~~~~~ 829 (844)
.|++|.|+.+.+.+.+........++....+..+.+.+ .+ .+|+++..+..+..+.+.+++.++
T Consensus 218 ~L~~e~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~G~~v~~~s~~~~~~~~~~~~~~~~e~~~~ 285 (286)
T PF03480_consen 218 SLPDEDQEALDDAADEAEARAREYYEAEDEEALKELEE---NGVTVVELSDEELAAWREAAAPVWEEFFEE 285 (286)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT-EEEEGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CcCEEeCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 37899999999999999999998888888888776665 33 259999999999999999885543
No 185
>PRK08006 replicative DNA helicase; Provisional
Probab=37.70 E-value=3e+02 Score=32.28 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=50.7
Q ss_pred CCCCcCccccccCCeeEe-----eHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHH-HHcCCcccccccc
Q psy3759 23 NPKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWL 96 (844)
Q Consensus 23 np~m~~yi~g~r~~~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~ 96 (844)
-+.+..++-|.+.|--|+ ..-||...|.-|.+... .+|..++|++.--....++..+. ..++..+ .++.
T Consensus 211 ~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~---~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~--~~i~ 285 (471)
T PRK08006 211 YDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAM---LQDKPVLIFSLEMPGEQIMMRMLASLSRVDQ--TRIR 285 (471)
T ss_pred CHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---hcCCeEEEEeccCCHHHHHHHHHHHhcCCCH--HHhh
Confidence 355666777888774444 77899998888877642 24778999987766666665544 3455544 2456
Q ss_pred CCCCCCh
Q psy3759 97 GGLLTNF 103 (844)
Q Consensus 97 ~G~lTN~ 103 (844)
.|.||+.
T Consensus 286 ~~~l~~~ 292 (471)
T PRK08006 286 TGQLDDE 292 (471)
T ss_pred cCCCCHH
Confidence 6888853
No 186
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=37.17 E-value=40 Score=31.53 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=24.9
Q ss_pred CcchHHHHHHHHhccCCHHHHHHHHHHHh
Q psy3759 234 LAPIMECKKALIEANGKLSKAEEILRIKL 262 (844)
Q Consensus 234 ~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg 262 (844)
+.+-.++++||+|+| |+..|.+.||.++
T Consensus 125 ~v~~eeAr~aleeag-Dl~~A~k~l~~~~ 152 (153)
T COG4008 125 FVTPEEAREALEEAG-DLRTAMKILRMKS 152 (153)
T ss_pred cCCHHHHHHHHHHcC-CHHHHHHHHHHhc
Confidence 367889999999997 9999999999875
No 187
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=36.93 E-value=1.2e+02 Score=27.20 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHH
Q psy3759 765 TKERREEIVKLIKNITE-ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEI 830 (844)
Q Consensus 765 T~E~R~~l~K~~k~~~e-~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~i 830 (844)
=.+.+-|+-|+++++-. +++.--+..++.+.+.+.+ +|..|.+...++|.+-..+.++.+
T Consensus 23 ~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~------ms~~e~~k~~~ev~k~~~~~~~~m 83 (93)
T PF06518_consen 23 VPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSK------MSVEERKKRREEVRKALEKRIKKM 83 (93)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTT------S-HHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 35889999999998877 7887778888777666554 588888888888887777755544
No 188
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=36.81 E-value=1.2e+02 Score=25.87 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 761 IPPLTKERREEIVKLIKNITEETKISIRKIRRDS 794 (844)
Q Consensus 761 iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~ 794 (844)
+|+.+.+.|+.+++.+....++|..-|...--++
T Consensus 15 ~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~ 48 (79)
T PF05008_consen 15 IKNLSGEQRKSLIREIERDLDEAEELLKQMELEV 48 (79)
T ss_dssp GGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556668999999999999999999887655443
No 189
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=36.47 E-value=64 Score=39.09 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=33.5
Q ss_pred CCCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCC--CcceEEccCC
Q psy3759 155 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGN 202 (844)
Q Consensus 155 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP~N 202 (844)
...|++|+++..-+ ..+++.|+..|+|||+|++...+| ...||.|+.+
T Consensus 337 ~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~ 390 (607)
T TIGR01135 337 DKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTR 390 (607)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEec
Confidence 35678888876543 347778888899999998765444 3456666654
No 190
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.32 E-value=49 Score=34.60 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCC-CcceEEccCCCccchhhhhhhccc
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGNDDSAKSIALYTKGI 216 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~-~~i~ypIP~N~ds~~si~~~~~~l 216 (844)
.+|.+|+.++..+...+.++...+||+|.+ |++... ..+.|.-+ |...+.+.....|
T Consensus 60 ~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~~v~~---d~~~~g~~~~~~l 117 (270)
T cd06294 60 RVDGFILLYSREDDPIIDYLKEEKFPFVVI-GKPEDDKENITYVDN---DNIQAGYDATEYL 117 (270)
T ss_pred CcCEEEEecCcCCcHHHHHHHhcCCCEEEE-CCCCCCCCCCCeEEE---CcHHHHHHHHHHH
Confidence 589999987666667789999999999987 544332 23444333 3345555544444
No 191
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=36.31 E-value=1.8e+02 Score=28.20 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 811 NEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 811 ~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
-....+...+.+.++.-.+++.+.+..+++|
T Consensus 79 a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i 109 (156)
T PRK05759 79 AKKRAAQIIEEAKAEAEAEAARIKAQAQAEI 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555444443
No 192
>PRK08840 replicative DNA helicase; Provisional
Probab=35.88 E-value=2.9e+02 Score=32.40 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=51.4
Q ss_pred CCCcCccccccCCeeEe-----eHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH-HHHcCCccccccccC
Q psy3759 24 PKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE-AVRAGMPFIDQRWLG 97 (844)
Q Consensus 24 p~m~~yi~g~r~~~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~-a~~~~~~~v~~rw~~ 97 (844)
+.+..++-|.+.|--|+ ..-||...|.-|.+... .++..++|++.--....++..+ +..++..+ .++..
T Consensus 205 ~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~---~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~--~~i~~ 279 (464)
T PRK08840 205 TDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAM---DQDKPVLIFSLEMPAEQLMMRMLASLSRVDQ--TKIRT 279 (464)
T ss_pred HHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHH---hCCCeEEEEeccCCHHHHHHHHHHhhCCCCH--HHHhc
Confidence 44556677878775555 78899998877776632 3477899999777777776655 44556544 35678
Q ss_pred CCCCCh
Q psy3759 98 GLLTNF 103 (844)
Q Consensus 98 G~lTN~ 103 (844)
|.||+.
T Consensus 280 ~~l~~~ 285 (464)
T PRK08840 280 GQLDDE 285 (464)
T ss_pred CCCCHH
Confidence 888853
No 193
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=35.88 E-value=1.9e+02 Score=28.58 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 813 YRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 813 ~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
...++..+.+.++.-++++.+.+..+++|
T Consensus 85 ~~a~~~~~~~l~~A~~ea~~~~~~a~~~I 113 (164)
T PRK14473 85 ERARAQEAEIIAQARREAEKIKEEARAQA 113 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555544443
No 194
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=35.63 E-value=1.8e+02 Score=29.35 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 767 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 767 E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
|.|++-+..--..+|+.+......+.++.+.+.+.+... .+-++-....+...+++.++-..+++.+.+..+++|
T Consensus 57 ~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I 132 (184)
T PRK13455 57 DKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQI 132 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555555555544432211 122222333444445555555555555555554444
No 195
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=35.62 E-value=1.6e+02 Score=31.59 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCC----cchHHHHHHhcCCCEEEEecCCCCCC-cceEEccC
Q psy3759 156 IPDAIFIIDVGY----HKGAVSEAIKLNIPIIGVVDTNHSPD-GINYVIPG 201 (844)
Q Consensus 156 ~P~~vii~~~~~----~~~ai~Ea~~l~IP~i~i~Dt~~~~~-~i~ypIP~ 201 (844)
.-|++|+++... -..+++.|+..|.|||+|++.++... ..|+.|+.
T Consensus 175 ~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 175 DGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 468888886443 23477889999999999998544322 34555543
No 196
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=35.61 E-value=46 Score=30.84 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=28.5
Q ss_pred CCCCEEEEeCCC----CcchHHHHHHhcCCCEEEEecCCCCC
Q psy3759 155 IIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP 192 (844)
Q Consensus 155 ~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~i~Dt~~~~ 192 (844)
...|++|++... +-..++++|+..|+|+|+|++...+|
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 357888887644 23356889999999999999876555
No 197
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=35.46 E-value=2e+02 Score=27.36 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 768 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 768 ~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
.|++.+...-..+++.+...-....++.+.+...+... .+-++-....+++.+.+.++--++++.+.+..+.+|
T Consensus 36 ~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i 110 (140)
T PRK07353 36 EREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREI 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444432211 133334444555555555555555555555555444
No 198
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.29 E-value=1.9e+02 Score=28.92 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 783 TKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 783 ~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
++..+++.|.++.+-+... ....++..+.+.++.-.+++.+.+..+.+|
T Consensus 75 ~e~~L~~a~~ea~~ii~~A----------~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I 123 (175)
T PRK14472 75 NRELLAKADAEADKIIREG----------KEYAEKLRAEITEKAHTEAKKMIASAKEEI 123 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444333 233444444444444444444444444443
No 199
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=35.25 E-value=1.9e+02 Score=35.30 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCC-CcceEEccCC
Q psy3759 156 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGN 202 (844)
Q Consensus 156 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~-~~i~ypIP~N 202 (844)
.-|++|+++...+ ..+++.|+..|+|||+|+|.++.. ...||.+|..
T Consensus 515 ~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~~ 566 (638)
T PRK14101 515 KGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALETD 566 (638)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEcC
Confidence 5688888875433 357788889999999999965432 2456666553
No 200
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=35.09 E-value=2e+02 Score=28.66 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3759 767 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840 (844)
Q Consensus 767 E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 840 (844)
+.|++.++.--..+++.+......+.++.+.++..++.. .+-++-....++..+.+.++.-.+.+.+.+..+.+
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ 126 (167)
T PRK08475 52 KSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEEL 126 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555554444432211 13333344445555555555555555555554443
No 201
>PLN02372 violaxanthin de-epoxidase
Probab=34.73 E-value=1.7e+02 Score=33.16 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=48.3
Q ss_pred CCcccHHHHHHHHHhcCCCCccee--cCCe-----eEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3759 729 FEKEMSSIIKKAINEANLGLNPTI--QGNI-----IYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKK 800 (844)
Q Consensus 729 ~d~~~~~~i~kAi~~s~l~~~p~~--~~~~-----i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk 800 (844)
|.++.++.+++|..+.++.+.--. |.+. +--.+++--+|--+.++|.+....++--..++.+|+..+..++.
T Consensus 327 lP~~~~p~L~~Aa~kvG~df~~F~~tDNsCgpep~l~~~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 327 LPESIVPELEKAAKKVGRDFSDFVRTDNTCGPEPPLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred CChhhhHHHHHHHHHcCCCHHHheeeCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999888888776542 3321 11122233345556677777777777777888888887777766
No 202
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=34.51 E-value=3.5e+02 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3759 771 EIVKLIKNITEETKISIRKIRRDSNENLKKL 801 (844)
Q Consensus 771 ~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~ 801 (844)
+.++.+|..=+++...|++.|+++.+-+...
T Consensus 3 e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~A 33 (103)
T PRK08404 3 DVIKEIVKAEKEAEERIEKAKEEAKKIIRKA 33 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777766555443
No 203
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=34.42 E-value=1.1e+02 Score=34.61 Aligned_cols=111 Identities=17% Similarity=0.109 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhccCCC-eEEEEecccchHHHHHHHHHHcCCccccccccCCCCC--ChHhHHHHHHHHHHHHhhhccCcc
Q psy3759 49 YEKAIRYIYQLGFSKG-TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT--NFKTIKTSIQRLKEMDLFITNGSI 125 (844)
Q Consensus 49 L~~a~~~i~~~~~~~~-~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lT--N~~~~~~~i~~~~~~~~~~~~~~~ 125 (844)
+.-|+.+...+..+|- ++.+++|.......+.... ..-.+++.-.|+++... |++.. ++.++-
T Consensus 14 v~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~-~~~~~~I~~~~~~~~~~~~~~~~~---~~~~~~---------- 79 (357)
T COG0707 14 VFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQY-GIEFELIPSGGLRRKGSLKLLKAP---FKLLKG---------- 79 (357)
T ss_pred hhHHHHHHHHHHhhCccEEEEecccccceeeecccc-CceEEEEecccccccCcHHHHHHH---HHHHHH----------
Confidence 4456666677766665 6888888876654433332 22223455455443322 22221 111111
Q ss_pred ccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCC
Q psy3759 126 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPD 193 (844)
Q Consensus 126 ~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~ 193 (844)
.++..++-+. ..||+||-+..----.+...|..++||++- ..+|..|-
T Consensus 80 -----------~~~a~~il~~--------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i-hEqn~~~G 127 (357)
T COG0707 80 -----------VLQARKILKK--------LKPDVVIGTGGYVSGPVGIAAKLLGIPVII-HEQNAVPG 127 (357)
T ss_pred -----------HHHHHHHHHH--------cCCCEEEecCCccccHHHHHHHhCCCCEEE-EecCCCcc
Confidence 1112222222 279999999988888899999999999864 46666554
No 204
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=33.75 E-value=54 Score=24.58 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=26.1
Q ss_pred hhhhhccc-CcchHHHHHHHHhccCCHHHHHHHHHH
Q psy3759 226 VGELRSKT-LAPIMECKKALIEANGKLSKAEEILRI 260 (844)
Q Consensus 226 v~~lr~~t-~~~~~~ck~aL~~~~~d~~~A~~~Lr~ 260 (844)
+..|+... ..+....+..|.+++||+|.|++.|-+
T Consensus 6 v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 6 LHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34444443 356677889999999999999988853
No 205
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=33.70 E-value=1.9e+02 Score=31.62 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCC--cceEEc
Q psy3759 155 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVI 199 (844)
Q Consensus 155 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~--~i~ypI 199 (844)
...|++|+++...+ ..+++.|+..|+|||+|++...+|- .-||.+
T Consensus 88 ~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l 138 (321)
T PRK11543 88 ESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVL 138 (321)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEE
Confidence 35789998875533 3577889999999999998765543 244444
No 206
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.58 E-value=1.3e+02 Score=32.41 Aligned_cols=74 Identities=9% Similarity=0.071 Sum_probs=58.6
Q ss_pred eeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCCcceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3759 712 KIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 785 (844)
Q Consensus 712 ~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~ 785 (844)
+-.|+-+.+|+.+.-.++++.....+.++..+.++.+.+..-.....+.+-.+.+|.|+.-++..++..+.|+.
T Consensus 26 ~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~i~~A~~ 99 (274)
T TIGR00587 26 TAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEELKRCEL 99 (274)
T ss_pred CEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999888777888888888888888888877765444344888889999999999998888877665
No 207
>PRK05670 anthranilate synthase component II; Provisional
Probab=33.13 E-value=83 Score=31.78 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=21.8
Q ss_pred EEEEecccchHHHHHHHHHHcCCccccccc
Q psy3759 66 LLFVGTKRQARGVIANEAVRAGMPFIDQRW 95 (844)
Q Consensus 66 iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw 95 (844)
||+|.+...+...|..+..+.|..+..-+|
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEEC
Confidence 788888888877777777777766543343
No 208
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=32.87 E-value=2.2e+02 Score=28.24 Aligned_cols=75 Identities=8% Similarity=0.049 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 767 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 767 E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
|.|++-+..-=..+|+.|...-..+.++.+.+....... .+-++-....++..+.+.++--++.+.+.+..+.+|
T Consensus 40 e~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I 115 (167)
T PRK14475 40 DAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKI 115 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444334455555555555555555554442211 123333344455555555555556666666555554
No 209
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=32.82 E-value=3e+02 Score=30.11 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=22.6
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEec
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 187 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~D 187 (844)
.||+||.. ....+..=|..++||+|.+.+
T Consensus 93 ~pDlVi~d---~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 93 NPDLIISD---FEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred CCCEEEEC---CchHHHHHHHhcCCCEEEEec
Confidence 69988844 344557789999999999976
No 210
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=32.76 E-value=2.2e+02 Score=28.41 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 766 KERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 766 ~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
.+|++.+.+... .+++.+...-....++...+.+.++.. .+-++-....+...+.+.++--++++.+.+..+.+|
T Consensus 49 ~~R~~~I~~~l~-~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i 124 (174)
T PRK07352 49 EERREAILQALK-EAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADL 124 (174)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433332 244444444444444444443332211 122333334445555555555555555555544443
No 211
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.61 E-value=2.1e+02 Score=29.53 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy3759 812 EYRAQYDIQKLTDKFILEINQ 832 (844)
Q Consensus 812 ~~~~~~~iq~l~~~~~~~id~ 832 (844)
...++++.+++..+.-.+|+.
T Consensus 135 ~~~A~~eae~ii~~A~~~Ie~ 155 (205)
T PRK06231 135 EKEANRQANLIIFQARQEIEK 155 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 212
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=32.35 E-value=2.2e+02 Score=28.34 Aligned_cols=28 Identities=25% Similarity=0.048 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 814 RAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 814 ~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
..++..+.+.++--++++.+.+..+.+|
T Consensus 94 ea~~~~~~~~~~A~~ea~~~~~~a~~~i 121 (173)
T PRK13460 94 DALKLKNKLLEETNNEVKAQKDQAVKEI 121 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444
No 213
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=31.95 E-value=57 Score=26.58 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=31.9
Q ss_pred hhhhhhcccCc-chHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759 225 TVGELRSKTLA-PIMECKKALIEANGKLSKAEEILRIK 261 (844)
Q Consensus 225 ~v~~lr~~t~~-~~~~ck~aL~~~~~d~~~A~~~Lr~k 261 (844)
.+..+++-||. +-.|-...|.|||.|-++|.+-|.-+
T Consensus 8 ~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 8 TVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 45567778888 89999999999999999999988765
No 214
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=31.66 E-value=2.6e+02 Score=27.67 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 762 PPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 837 (844)
Q Consensus 762 P~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 837 (844)
.+||+|-.+.|...+..+- ..|.+..+.++.....+.+||.-....-++=|...+..+..++..++..
T Consensus 6 ~~lT~eg~~~L~~EL~~L~--------~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 6 KGLAPAARDHLEAELARLR--------ARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred CccCHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3699999998888777652 2355555555555556779999999999999999999999999998754
No 215
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.63 E-value=3.6e+02 Score=26.06 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=51.8
Q ss_pred CeeEEeCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHH
Q psy3759 755 NIIYVSIPPLTKER--REEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEIN 831 (844)
Q Consensus 755 ~~i~v~iP~~T~E~--R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id 831 (844)
..-.|.+..+=.++ .+...+..++..++....+...+++..+..+++.+.+ .+|+++....+.+++....++-....
T Consensus 18 kIa~Vd~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~ 97 (158)
T PF03938_consen 18 KIAVVDVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQ 97 (158)
T ss_dssp CEEEE-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEeeHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333 4556677777788888888888888888888776654 58999998888888887776665444
Q ss_pred H
Q psy3759 832 Q 832 (844)
Q Consensus 832 ~ 832 (844)
.
T Consensus 98 ~ 98 (158)
T PF03938_consen 98 Q 98 (158)
T ss_dssp H
T ss_pred H
Confidence 3
No 216
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=31.52 E-value=2.1e+02 Score=25.96 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy3759 766 KERREEIVKLIKNITEETKISIRKIRRDSNENLKKL--LKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILT 843 (844)
Q Consensus 766 ~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~--~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel~~ 843 (844)
...|...+|.|+..++.--...|.-+..-.+....- ...+.....-....+.+|+.+.+.|-+..+.+++.-=+.+++
T Consensus 24 r~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv~~ll~~V~~ 103 (105)
T PF03179_consen 24 RKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVVDMLLSRVCD 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Q ss_pred C
Q psy3759 844 L 844 (844)
Q Consensus 844 ~ 844 (844)
|
T Consensus 104 V 104 (105)
T PF03179_consen 104 V 104 (105)
T ss_dssp -
T ss_pred C
No 217
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=31.46 E-value=1.7e+02 Score=33.99 Aligned_cols=75 Identities=7% Similarity=0.087 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 767 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 767 E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
+.|++.++.--..+|+++..+...+.++.+.+.+.++.. .|-++-....++..+.+.++--.+++.+.+..+++|
T Consensus 31 ~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~I 106 (445)
T PRK13428 31 AARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQV 106 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444466666666666666555555543322 233444444555555555555555555555554443
No 218
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=31.46 E-value=1.6e+02 Score=31.49 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=49.7
Q ss_pred HHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh--------hc---cccchHHHHHHHH-hCCCCEEEEec
Q psy3759 567 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KK---LEIMDSTAFSFCR-DQKLPIRVFSI 634 (844)
Q Consensus 567 A~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~--------~G---~~v~~~~Aa~~a~-~~gi~v~I~~g 634 (844)
=.+++|+ +-++.||.-=...+ . ..+.+.+...+-+.. +| |.-+++.-...++ ..+.|+++-+|
T Consensus 134 R~~l~a~-v~ilaDV~~kh~~~--l--~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSG 208 (254)
T PF03437_consen 134 RKRLGAD-VKILADVHVKHSSP--L--ATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSG 208 (254)
T ss_pred HHHcCCC-eEEEeeechhhccc--C--CCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecC
Confidence 3568999 88899987544321 0 011122221111111 22 2344554333333 33589999999
Q ss_pred CCcchHHHHHc---CCcccEEEEec
Q psy3759 635 IKSGALKRVIE---GKNEGTLVYEI 656 (844)
Q Consensus 635 ~~~~~i~~~l~---Ge~~GT~I~~~ 656 (844)
-.++|+.+.|. |--+||.|..+
T Consensus 209 vt~~Ni~~~l~~ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 209 VTPENIAEYLSYADGAIVGSYFKKD 233 (254)
T ss_pred CCHHHHHHHHHhCCEEEEeeeeeeC
Confidence 99999998875 44579999865
No 219
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=31.32 E-value=2.3e+02 Score=29.25 Aligned_cols=57 Identities=5% Similarity=0.002 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 780 TEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLIN 836 (844)
Q Consensus 780 ~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~ 836 (844)
.++++..|...|.++.+-+....+.. ...+.....++.+++++..+-.++|+..-..
T Consensus 107 ~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~ 164 (204)
T PRK09174 107 VAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAK 164 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555544443321111 1223334444444444444444444443333
No 220
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=31.29 E-value=44 Score=29.80 Aligned_cols=29 Identities=38% Similarity=0.658 Sum_probs=20.7
Q ss_pred CceEEEEeCCEEEEEEEecCCchhccchHHHHH
Q psy3759 277 GVIAIYISEKVGSLVEINCETDFVAKNNEFIKF 309 (844)
Q Consensus 277 G~i~~y~~~~~gviveln~etdfvA~n~~f~~l 309 (844)
|--.+++-|+.||.||+. +.|| |+.|+.|
T Consensus 78 g~yavci~Gn~GVFVe~~-kadf---~kIfk~L 106 (109)
T COG4831 78 GKYAVCIMGNVGVFVELD-KADF---NKIFKTL 106 (109)
T ss_pred CceEEEEecceeEEEEcc-hhhH---HHHHHHH
Confidence 444667779999999984 5666 5667665
No 221
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=31.26 E-value=2.5e+02 Score=27.71 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3759 816 QYDIQKLTDKFILEINQLLINKEKE 840 (844)
Q Consensus 816 ~~~iq~l~~~~~~~id~~~~~keke 840 (844)
++..+.+.++--++++.+.+..+.+
T Consensus 88 ~~~~~~~~~~A~~ea~~~~~~a~~~ 112 (164)
T PRK14471 88 EKMIADAKEEAQVEGDKMIEQAKAS 112 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 222
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=31.23 E-value=72 Score=31.13 Aligned_cols=49 Identities=10% Similarity=-0.000 Sum_probs=33.4
Q ss_pred CCCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCC--cceEEccCCC
Q psy3759 155 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPGND 203 (844)
Q Consensus 155 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~--~i~ypIP~N~ 203 (844)
+..|++|++....+ ..+++.|++.|+|+|+|++...+|- .-|+.|...+
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~ 132 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPH 132 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 45789988875533 3567888999999999998654432 3555554444
No 223
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=31.11 E-value=70 Score=33.34 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEcc
Q psy3759 155 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIP 200 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP 200 (844)
..+|.+|+.....+...++++...+||+|.+ |++.....+.|..+
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~-~~~~~~~~~~~v~~ 98 (265)
T cd06299 54 QRVDGIIVVPHEQSAEQLEDLLKRGIPVVFV-DREITGSPIPFVTS 98 (265)
T ss_pred cCCCEEEEcCCCCChHHHHHHHhCCCCEEEE-ecccCCCCCCEEEE
Confidence 3689999887665666789999999999876 55433333455443
No 224
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=31.08 E-value=65 Score=22.60 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=20.6
Q ss_pred HHHHHHhhhhcCCCCchhhhhHHHHH
Q psy3759 794 SNENLKKLLKNKILSVDNEYRAQYDI 819 (844)
Q Consensus 794 ~~~~~kk~~k~~~~s~D~~~~~~~~i 819 (844)
.++.++.+..+|.||+++..+..++|
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35667778888999999998877765
No 225
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.81 E-value=98 Score=30.56 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=28.3
Q ss_pred CCCCEEEEeCCCCcch---HHHHHHhc-CCCEEEEe-cCCC-CCCc
Q psy3759 155 IIPDAIFIIDVGYHKG---AVSEAIKL-NIPIIGVV-DTNH-SPDG 194 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~---ai~Ea~~l-~IP~i~i~-Dt~~-~~~~ 194 (844)
..||+||.+-|..... .+++...+ ++|+++++ |-++ .+.+
T Consensus 88 ~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H~~W 133 (169)
T PF06925_consen 88 FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVHPFW 133 (169)
T ss_pred cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCCcCe
Confidence 4799999999986655 25667767 89998776 5543 4443
No 226
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=30.76 E-value=2.5e+02 Score=28.07 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3759 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840 (844)
Q Consensus 781 e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 840 (844)
++++..+++.|.++.+-+...+ ...+...+.+.++--++++.+....+++
T Consensus 73 ~e~e~~l~~a~~ea~~ii~~a~----------~~a~~~~~~~~~~A~~ea~~~~~~A~~~ 122 (173)
T PRK13453 73 EENKQKLKETQEEVQKILEDAK----------VQARQQQEQIIHEANVRANGMIETAQSE 122 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555666555555444332 2333444444444444444444444433
No 227
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=30.71 E-value=1.7e+02 Score=27.25 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 770 EEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 770 ~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
++..+.+....+++...+.+.|.++.+-++..+... .+-+.-....+++++.+.++...+|+..-+...+++
T Consensus 43 ~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l 115 (132)
T PF00430_consen 43 EELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKEL 115 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666677777766665554432211 123334445556666666666666555544444443
No 228
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=30.66 E-value=50 Score=30.57 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=35.4
Q ss_pred CCCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCC-------cceEEccCCCccchh
Q psy3759 155 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD-------GINYVIPGNDDSAKS 208 (844)
Q Consensus 155 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~-------~i~ypIP~N~ds~~s 208 (844)
...|++|+++...+ ..+++.|+..|+|+|+|++ +.+.. ...+++|.+...+.|
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~-~~~l~~~~~~~~~~~~~~p~~~~~r~s 105 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITS-GGKLLEMAREHGVPVIIIPKGLQPRAA 105 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeC-CchHHHHHHHcCCcEEECCCCCCCcee
Confidence 35788888875533 3467788899999999984 22222 134777877665544
No 229
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=30.52 E-value=71 Score=33.36 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=38.7
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccc
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 217 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~ 217 (844)
.+|.+|++.+..+..+++++...|||+|.+ |+..+...+.|... |...+.......|.
T Consensus 55 ~vdgiii~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~v~~---d~~~~~~~~~~~l~ 112 (268)
T cd06273 55 GVDGLALIGLDHSPALLDLLARRGVPYVAT-WNYSPDSPYPCVGF---DNREAGRLAARHLI 112 (268)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-cCCCCCCCCCEEEe---ChHHHHHHHHHHHH
Confidence 589999988776778889999999999987 44433333445443 44555555555553
No 230
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=30.37 E-value=1.6e+02 Score=30.86 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=37.2
Q ss_pred CCCCEEEEeCCCCc--chHHHHHHhcCCCEEEEecCCCC-CCcceEEccCCCccchhhhhhhcccccc
Q psy3759 155 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHS-PDGINYVIPGNDDSAKSIALYTKGIVDA 219 (844)
Q Consensus 155 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~i~Dt~~~-~~~i~ypIP~N~ds~~si~~~~~~l~~a 219 (844)
+.+|.+|+.....+ ...+.++.. +||+|.+ |.+.+ ...+.|.- .|...+-+..+..|.+.
T Consensus 54 ~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~-~~~~~~~~~~~~V~---~D~~~~g~~a~~~l~~~ 116 (271)
T cd06314 54 EGVDGIAISPIDPKAVIPALNKAAA-GIKLITT-DSDAPDSGRYVYIG---TDNYAAGRTAGEIMKKA 116 (271)
T ss_pred cCCCEEEEecCChhHhHHHHHHHhc-CCCEEEe-cCCCCccceeEEEc---cChHHHHHHHHHHHHHH
Confidence 46999998754433 456788888 9999988 44432 23344543 24455666666666544
No 231
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=30.36 E-value=55 Score=34.34 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=37.8
Q ss_pred CCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccc
Q psy3759 155 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 217 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~ 217 (844)
+.+|.+|+..+..+...++++...|||+|.+ |++.+....++. ..|...+.+...+.|.
T Consensus 54 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v---~~d~~~~~~~~~~~l~ 112 (268)
T cd06270 54 RRCDALILHSKALSDDELIELAAQVPPLVLI-NRHIPGLADRCI---WLDNEQGGYLATEHLI 112 (268)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhCCCCEEEE-eccCCCCCCCeE---EECcHHHHHHHHHHHH
Confidence 4699999987654444489999999999988 554432223332 2455556666655554
No 232
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=30.33 E-value=3.8e+02 Score=26.48 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3759 777 KNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 835 (844)
Q Consensus 777 k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~ 835 (844)
.+...++|...+.||.++.+++..- .+.+.+.++.++-++.++-++++..+.+
T Consensus 68 e~~L~~Ar~eA~~I~~e~~~~~~a~------~~~~~~~~ea~L~~~~~~~~~~~~~~~~ 120 (155)
T PRK06569 68 NEEIDKTNTEIDRLKKEKIDSLESE------FLIKKKNLEQDLKNSINQNIEDINLAAK 120 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555544421 4667777888888888887777766554
No 233
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=30.31 E-value=79 Score=38.85 Aligned_cols=99 Identities=15% Similarity=0.049 Sum_probs=54.4
Q ss_pred CCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCC--CcceEEccCCC---ccchhh-hhh-----hcccccchh
Q psy3759 157 PDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGND---DSAKSI-ALY-----TKGIVDAFL 221 (844)
Q Consensus 157 P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP~N~---ds~~si-~~~-----~~~l~~ai~ 221 (844)
-|++|+++..-+ ..|++.|+..|.|||+|++...+| +..||.|+.+. .+..+. .+. +.++.-.+.
T Consensus 402 ~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~ag~E~~va~Tks~tsql~~l~llal~la 481 (670)
T PTZ00394 402 DDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTSQVVVLTLVALLLS 481 (670)
T ss_pred CCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEEecccccccccccHhHHHHHHHHHHHHHHHH
Confidence 367887765533 347888899999999998766555 45677776532 222222 111 112211111
Q ss_pred cchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 261 (844)
Q Consensus 222 ~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k 261 (844)
. .+........++.++|.....-++++++|.++.
T Consensus 482 ~------~~~~~~~~~~~l~~~l~~lp~~i~~~l~~~~~~ 515 (670)
T PTZ00394 482 S------DSVRLQERRNEIIRGLAELPAAISECLKITHDP 515 (670)
T ss_pred H------hcCchHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 1 011001123456667777777788888775543
No 234
>KOG1970|consensus
Probab=30.29 E-value=5.1e+02 Score=30.96 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=33.4
Q ss_pred cCCCeEEEEecccc--hHHHHHHHHHHcCCccccccccCCCCCChHh
Q psy3759 61 FSKGTLLFVGTKRQ--ARGVIANEAVRAGMPFIDQRWLGGLLTNFKT 105 (844)
Q Consensus 61 ~~~~~iLfv~t~~~--~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~ 105 (844)
..+++||.+..... -+..|+-+++..|..|+ .|..++.+-|..
T Consensus 107 ~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~--Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 107 KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI--EWSNPINLKEPE 151 (634)
T ss_pred CCCceEEEEeCCCCCCchhHHHHHHHhhCceee--eecCCccccccc
Confidence 34678988876654 47788999999998887 699888887764
No 235
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=29.67 E-value=2.6e+02 Score=28.18 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3759 815 AQYDIQKLTDKFILEINQLLINKEK 839 (844)
Q Consensus 815 ~~~~iq~l~~~~~~~id~~~~~kek 839 (844)
.++..+.+.++--++++.+.+..+.
T Consensus 103 ae~~~~~il~~A~~ea~~~~~~a~~ 127 (184)
T CHL00019 103 IEREKENLINQAKEDLERLENYKNE 127 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 236
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=29.46 E-value=1.5e+02 Score=30.27 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=17.5
Q ss_pred EEEEecccchHHHHHHHHHHcCCccc
Q psy3759 66 LLFVGTKRQARGVIANEAVRAGMPFI 91 (844)
Q Consensus 66 iLfv~t~~~~~~~v~~~a~~~~~~~v 91 (844)
||+|.....+.+-+.....+.|....
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~ 27 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELV 27 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEE
Confidence 78888887766656666666665543
No 237
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=29.21 E-value=3e+02 Score=26.51 Aligned_cols=9 Identities=11% Similarity=0.468 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy3759 786 SIRKIRRDS 794 (844)
Q Consensus 786 ~iR~iR~~~ 794 (844)
.+++.|.++
T Consensus 67 ~l~~Ar~eA 75 (141)
T PRK08476 67 ILKNAREEA 75 (141)
T ss_pred HHHHHHHHH
Confidence 333333333
No 238
>PRK08506 replicative DNA helicase; Provisional
Probab=29.13 E-value=2.5e+02 Score=33.00 Aligned_cols=84 Identities=15% Similarity=0.283 Sum_probs=55.7
Q ss_pred CCCcCccccccCC-eeEe----eHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH-HHHcCCccccccccC
Q psy3759 24 PKMSSYIFGHRNK-IHII----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE-AVRAGMPFIDQRWLG 97 (844)
Q Consensus 24 p~m~~yi~g~r~~-~~Ii----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~-a~~~~~~~v~~rw~~ 97 (844)
+.+..++-|.+.| ..|| ..-||...+.-|.+.. .+|..++|++.--....++..+ |..++..+ .++..
T Consensus 180 ~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~----~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~--~~i~~ 253 (472)
T PRK08506 180 VELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKAL----NQDKGVAFFSLEMPAEQLMLRMLSAKTSIPL--QNLRT 253 (472)
T ss_pred HHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHH----hcCCcEEEEeCcCCHHHHHHHHHHHhcCCCH--HHHhc
Confidence 4555566778877 4444 7789999998888764 4678899999777777776655 44466554 24667
Q ss_pred CCCCC--hHhHHHHHHHH
Q psy3759 98 GLLTN--FKTIKTSIQRL 113 (844)
Q Consensus 98 G~lTN--~~~~~~~i~~~ 113 (844)
|.|+. |..+.....++
T Consensus 254 ~~l~~~e~~~~~~a~~~l 271 (472)
T PRK08506 254 GDLDDDEWERLSDACDEL 271 (472)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 88875 44444444433
No 239
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=29.01 E-value=5.3e+02 Score=27.25 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=26.0
Q ss_pred HHHHHHhhccCCCeEEEEecccc--hHHHHHHHHHHcCCc
Q psy3759 52 AIRYIYQLGFSKGTLLFVGTKRQ--ARGVIANEAVRAGMP 89 (844)
Q Consensus 52 a~~~i~~~~~~~~~iLfv~t~~~--~~~~v~~~a~~~~~~ 89 (844)
|..+|..+..+|-+|.||.+|.+ .....+.+.+..|.+
T Consensus 119 a~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip 158 (237)
T PRK11009 119 ARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIP 158 (237)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCC
Confidence 77788888777888888888763 344555555556663
No 240
>PRK07004 replicative DNA helicase; Provisional
Probab=28.83 E-value=4.2e+02 Score=31.02 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=84.0
Q ss_pred CCcCccccccCCeeEe-----eHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH-HHHcCCccccccccCC
Q psy3759 25 KMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE-AVRAGMPFIDQRWLGG 98 (844)
Q Consensus 25 ~m~~yi~g~r~~~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~-a~~~~~~~v~~rw~~G 98 (844)
.+...+-|.+.|--|+ ..-||...+.-|++... .+|..++|++.--....++..+ +..++..+ .++..|
T Consensus 202 ~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~---~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~--~~i~~g 276 (460)
T PRK07004 202 DLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAV---EYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQ--HRMRTG 276 (460)
T ss_pred HhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHH---HcCCeEEEEeCCCCHHHHHHHHHHhhcCCCH--HHHhcC
Confidence 4445556777764444 67899887777765542 3578899998777777777766 34444433 245678
Q ss_pred CCCC--hHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeC------CC---C
Q psy3759 99 LLTN--FKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID------VG---Y 167 (844)
Q Consensus 99 ~lTN--~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~------~~---~ 167 (844)
.||. |..+...+.++... .-.++..+.-....+..+..++.+..++ +++|| +| +. .
T Consensus 277 ~l~~~e~~~~~~a~~~l~~~-----~l~I~d~~~~~~~~i~~~~r~l~~~~~~-------~~lvi-IDYLql~~~~~~~~ 343 (460)
T PRK07004 277 RLTDEDWPKLTHAVQKMSEA-----QLFIDETGGLNPMELRSRARRLARQCGK-------LGLII-IDYLQLMSGSSQGE 343 (460)
T ss_pred CCCHHHHHHHHHHHHHHhcC-----CEEEECCCCCCHHHHHHHHHHHHHhCCC-------CCEEE-EChhhhccCCCCCC
Confidence 8874 44444444444221 1122333332333445555556555433 45544 33 11 1
Q ss_pred cc-hHHHH--------HHhcCCCEEEEecCCCCCC
Q psy3759 168 HK-GAVSE--------AIKLNIPIIGVVDTNHSPD 193 (844)
Q Consensus 168 ~~-~ai~E--------a~~l~IP~i~i~Dt~~~~~ 193 (844)
++ ..+.+ |..++||||+++=-|-...
T Consensus 344 ~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e 378 (460)
T PRK07004 344 NRATEISEISRSLKSLAKELDVPVIALSQLNRGLE 378 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhh
Confidence 11 12222 5578999999987665543
No 241
>KOG1664|consensus
Probab=28.82 E-value=2e+02 Score=29.54 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3759 782 ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 842 (844)
Q Consensus 782 ~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel~ 842 (844)
+-+..++-||+++.++.+... ++.++.+.+|+ -.|...-..+|++-++.|||++.
T Consensus 9 qi~~M~aFI~qEA~EKA~EI~----~kAeeEfnIEK--~rlV~~q~~kI~~~yekKeKqve 63 (220)
T KOG1664|consen 9 QIKHMVAFIRQEAEEKAKEID----AKAEEEFNIEK--GRLVQEQRLKIMQYYEKKEKQVE 63 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----hhhHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578899999999887653 56677776665 35667777888888888888763
No 242
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=28.56 E-value=1.4e+02 Score=30.30 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=20.7
Q ss_pred CCCEEEEeCCC-------CcchHHHHHHhcCCCEEEEe
Q psy3759 156 IPDAIFIIDVG-------YHKGAVSEAIKLNIPIIGVV 186 (844)
Q Consensus 156 ~P~~vii~~~~-------~~~~ai~Ea~~l~IP~i~i~ 186 (844)
.||.||++.-. .+...++++ ..++|+.|||
T Consensus 43 ~~d~iilsgGpg~p~~~~~~~~~i~~~-~~~~PvLGIC 79 (188)
T TIGR00566 43 LPLLIVISPGPCTPNEAGISLEAIRHF-AGKLPILGVC 79 (188)
T ss_pred CCCEEEEcCCCCChhhcchhHHHHHHh-ccCCCEEEEC
Confidence 58988887422 123466666 6699999997
No 243
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=28.54 E-value=4.3e+02 Score=30.27 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=50.7
Q ss_pred CCCcCccccccCC-eeEe----eHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH-HHHcCCccccccccC
Q psy3759 24 PKMSSYIFGHRNK-IHII----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE-AVRAGMPFIDQRWLG 97 (844)
Q Consensus 24 p~m~~yi~g~r~~-~~Ii----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~-a~~~~~~~v~~rw~~ 97 (844)
|.+...+.|.+.| ..+| ..-||...+.-|.++.. .++..++|++.--....++..+ +..+|..+- +|..
T Consensus 182 ~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~---~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~--~~~~ 256 (421)
T TIGR03600 182 PKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVAL---REGKPVLFFSLEMSAEQLGERLLASKSGINTG--NIRT 256 (421)
T ss_pred hhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH---hCCCcEEEEECCCCHHHHHHHHHHHHcCCCHH--HHhc
Confidence 4555566687877 5554 67799999888876642 4578899999777666666654 445666542 5778
Q ss_pred CCCCC
Q psy3759 98 GLLTN 102 (844)
Q Consensus 98 G~lTN 102 (844)
|.+++
T Consensus 257 ~~l~~ 261 (421)
T TIGR03600 257 GRFND 261 (421)
T ss_pred CCCCH
Confidence 88875
No 244
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=28.50 E-value=2.1e+02 Score=28.25 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 762 PPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLIN 836 (844)
Q Consensus 762 P~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~ 836 (844)
+.||+|-.+.|.+.+..+-. .-|.+..+.++.....+.+||+-.+.+-++-|...+..+..++..++.
T Consensus 3 ~~lT~~G~~~L~~El~~L~~-------~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 3 PLITPEGYEKLKQELNYLWR-------EERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred cccCHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999988877766421 123444444555545677999999999999999999999999988875
No 245
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=28.20 E-value=1.6e+02 Score=31.65 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=24.3
Q ss_pred CCCCEEEEeCCCCc--chHHHHHHhcCCCEEEEecCC
Q psy3759 155 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTN 189 (844)
Q Consensus 155 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~i~Dt~ 189 (844)
+-+|.+|+.....+ ..+++++...+||+|.+ |++
T Consensus 55 ~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~-~~~ 90 (302)
T TIGR02637 55 QKVDAIAISANDPDALVPALKKAMKRGIKVVTW-DSG 90 (302)
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEe-CCC
Confidence 35899998754322 34588889999999976 443
No 246
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.18 E-value=74 Score=33.10 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhccc
Q psy3759 155 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 216 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l 216 (844)
..+|.+|+..+..+..+++++...+||+|.+ |++.+...+.|.-. |..++-+..+..|
T Consensus 54 ~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~v~~---d~~~~g~~~~~~l 111 (267)
T cd06283 54 YQVDGLIVNPTGNNKELYQRLAKNGKPVVLV-DRKIPELGVDTVTL---DNYEAAKEAVDHL 111 (267)
T ss_pred cCcCEEEEeCCCCChHHHHHHhcCCCCEEEE-cCCCCCCCCCEEEe---ccHHHHHHHHHHH
Confidence 3589999887766666789999999999997 55443333444332 3344555555544
No 247
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=28.11 E-value=3.1e+02 Score=26.30 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 780 TEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 780 ~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
+++.+...-..+.++...+...+... .+-++-....++..+.+.++.-++++.+.+..+.+|
T Consensus 38 A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i 100 (147)
T TIGR01144 38 AERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEI 100 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444332211 122233334455555555555555555555555544
No 248
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=28.02 E-value=50 Score=22.35 Aligned_cols=17 Identities=41% Similarity=0.173 Sum_probs=13.1
Q ss_pred HHHHHHHHHHH--hhhhhh
Q psy3759 251 LSKAEEILRIK--LGKKIL 267 (844)
Q Consensus 251 ~~~A~~~Lr~k--g~~~a~ 267 (844)
+.+|-+||.+| |+.+|+
T Consensus 6 ~k~~~~wlkkkgpgi~kaa 24 (29)
T PF07442_consen 6 LKKAGEWLKKKGPGILKAA 24 (29)
T ss_pred HHHHHHHHHhcCchHHHHH
Confidence 46788999999 566664
No 249
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=27.99 E-value=2e+02 Score=30.13 Aligned_cols=59 Identities=20% Similarity=0.169 Sum_probs=34.4
Q ss_pred CCEEEEeCCCCcchHHHHHHh----cCCCEEEEecCC-CCCCcceEEccCCCccchhhhhhhcc
Q psy3759 157 PDAIFIIDVGYHKGAVSEAIK----LNIPIIGVVDTN-HSPDGINYVIPGNDDSAKSIALYTKG 215 (844)
Q Consensus 157 P~~vii~~~~~~~~ai~Ea~~----l~IP~i~i~Dt~-~~~~~i~ypIP~N~ds~~si~~~~~~ 215 (844)
||+||+.+-..-.-++..+.. .+||++|+-|+. ..|...++..|...-...+..++..+
T Consensus 185 ~dai~~~~d~~a~~~~~~~~~~~~~~~ipvig~d~~~~~~~~l~tv~~~~~~~G~~a~~~l~~~ 248 (281)
T cd06325 185 VDAIYVPTDNTVASAMEAVVKVANEAKIPVIASDDDMVKRGGLATYGIDYYELGRQTGKMAAKI 248 (281)
T ss_pred CCEEEEcCchhHHhHHHHHHHHHHHcCCCEEEcCHHHHhCCceEEecCCHHHHHHHHHHHHHHH
Confidence 798887653322234444444 479999998775 45555555555444445555555443
No 250
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=27.99 E-value=2.5e+02 Score=24.77 Aligned_cols=74 Identities=28% Similarity=0.347 Sum_probs=41.9
Q ss_pred eeEEEecccccccceeeeeeccCCceEE-EecCCcccHHHHHHHHHhcCCCC---ccee-cCC-eeEEeCCCCCHHHHHH
Q psy3759 698 NIQVKYHEHLTKLLKIANITLFNSHTIS-IQPFEKEMSSIIKKAINEANLGL---NPTI-QGN-IIYVSIPPLTKERREE 771 (844)
Q Consensus 698 ~i~V~~~g~~~~l~~~A~i~~~~~~~l~-i~~~d~~~~~~i~kAi~~s~l~~---~p~~-~~~-~i~v~iP~~T~E~R~~ 771 (844)
.|+|......-.|+-+|+|+..|.-++. |.+- ++.-|+ .|+. .++ .-+=..=|+|+|.|++
T Consensus 5 dVri~~~~~~~~lka~asV~~dd~f~I~~ikVi-------------eg~~GlFVaMPs~k~~~g~y~Di~~Pitke~Re~ 71 (84)
T PF04026_consen 5 DVRIRKIEPEGKLKAFASVTFDDCFVIHDIKVI-------------EGEKGLFVAMPSRKSKDGEYKDICHPITKEFREQ 71 (84)
T ss_dssp EEEEEETTSSSSEEEEEEEEETTTEEEEEEEEE-------------EETTEEEEE--EEE-TTS-EEESEEESSHHHHHH
T ss_pred EEEEEEecCCCCEEEEEEEEECCEEEEEeEEEE-------------ECCCCcEEECCCcCCCCCCEEEEEEECCHHHHHH
Confidence 4666655555668999999998854443 2211 122222 2331 222 1111112689999999
Q ss_pred HHHHHHHHHHHHH
Q psy3759 772 IVKLIKNITEETK 784 (844)
Q Consensus 772 l~K~~k~~~e~~k 784 (844)
+-..+-+..+++|
T Consensus 72 i~~aVl~aY~~~~ 84 (84)
T PF04026_consen 72 IEEAVLDAYEEAK 84 (84)
T ss_dssp HHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhcC
Confidence 9999888877764
No 251
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.86 E-value=98 Score=32.91 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=36.6
Q ss_pred CCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhccc
Q psy3759 155 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 216 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l 216 (844)
..+|.+|+.....+...++++...|||+|.+ |++.+ ..+.|.-+ |...+-+.....|
T Consensus 55 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~-~~~~~v~~---d~~~~g~~~~~~L 111 (283)
T cd06279 55 ALVDGFIVYGVPRDDPLVAALLRRGLPVVVV-DQPLP-PGVPSVGI---DDRAAAREAARHL 111 (283)
T ss_pred cCCCEEEEeCCCCChHHHHHHHHcCCCEEEE-ecCCC-CCCCEEee---CcHHHHHHHHHHH
Confidence 3689999886555556789999999999877 66544 33444333 3344444444444
No 252
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=27.68 E-value=1e+02 Score=32.13 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=38.3
Q ss_pred CCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccc
Q psy3759 155 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 217 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~ 217 (844)
+.+|.+++.....+...++++...|+|+|.+ |+..+.....|... |...+.+.....|.
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~---d~~~~g~~~~~~l~ 112 (264)
T cd06274 54 RQVDALIVAGSLPPDDPYYLCQKAGLPVVAL-DRPGDPSRFPSVVS---DNRDGAAELTRELL 112 (264)
T ss_pred cCCCEEEEcCCCCchHHHHHHHhcCCCEEEe-cCccCCCCCCEEEE---ccHHHHHHHHHHHH
Confidence 3689999887665555588999999999888 66554334555433 44555555554443
No 253
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=27.65 E-value=6e+02 Score=25.29 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=35.8
Q ss_pred ccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecc---cchHHHHHHHHHHcCCccccccc
Q psy3759 29 YIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTK---RQARGVIANEAVRAGMPFIDQRW 95 (844)
Q Consensus 29 yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~---~~~~~~v~~~a~~~~~~~v~~rw 95 (844)
.++|.+....+ ..+.....|++| +.-+++||.. ..+.+.+.+++++.|.+++.+-.
T Consensus 5 ~~~g~~~a~~~-~p~~aa~lLk~A----------KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 5 AISGPKHATLV-SPKLVAMMIKRA----------KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred ccCCccccccc-CHHHHHHHHHcC----------CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 44555553333 666555555433 3446667743 46788999999999998876544
No 254
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=27.43 E-value=3.7e+02 Score=31.28 Aligned_cols=39 Identities=31% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCEEEEeCC-CCcchHHHHHHhcCCCEEEEecCCCCCCcc
Q psy3759 157 PDAIFIIDV-GYHKGAVSEAIKLNIPIIGVVDTNHSPDGI 195 (844)
Q Consensus 157 P~~vii~~~-~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i 195 (844)
-|+.+-++. ..-..++.||...|+|++|+=.|-.+++.+
T Consensus 348 ~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i 387 (438)
T TIGR02919 348 CDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFI 387 (438)
T ss_pred ccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccc
Confidence 454444443 466789999999999999997775554443
No 255
>KOG0944|consensus
Probab=27.41 E-value=50 Score=39.50 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=25.7
Q ss_pred cCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759 233 TLAPIMECKKALIEANGKLSKAEEILRIK 261 (844)
Q Consensus 233 t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k 261 (844)
-|...-.|+|||.++|||+|.|++|+-..
T Consensus 645 mGf~~~qa~~aL~~~n~nveravDWif~h 673 (763)
T KOG0944|consen 645 MGFSRNQAIKALKATNNNVERAVDWIFSH 673 (763)
T ss_pred ecCcHHHHHHHHHhcCccHHHHHHHHHhc
Confidence 37778899999999999999999999753
No 256
>PRK05595 replicative DNA helicase; Provisional
Probab=27.20 E-value=6.3e+02 Score=29.27 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=53.2
Q ss_pred CCCcCccccccCCeeEe-----eHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH-HHHcCCccccccccC
Q psy3759 24 PKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE-AVRAGMPFIDQRWLG 97 (844)
Q Consensus 24 p~m~~yi~g~r~~~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~-a~~~~~~~v~~rw~~ 97 (844)
|.+...+-|.+.|--++ ..-||...+.-|++.-. .+|..++|++.--....++..+ |..++..+- ++..
T Consensus 189 ~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~---~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~--~~~~ 263 (444)
T PRK05595 189 RELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAAL---REGKSVAIFSLEMSKEQLAYKLLCSEANVDML--RLRT 263 (444)
T ss_pred HHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHH---HcCCcEEEEecCCCHHHHHHHHHHHhcCCCHH--HHhc
Confidence 45555666788775555 77899998888876532 3578899998776665665553 455666553 4556
Q ss_pred CCCCC--hHhHHHHHH
Q psy3759 98 GLLTN--FKTIKTSIQ 111 (844)
Q Consensus 98 G~lTN--~~~~~~~i~ 111 (844)
|.|++ |..+.+...
T Consensus 264 ~~l~~~e~~~~~~~~~ 279 (444)
T PRK05595 264 GNLEDKDWENIARASG 279 (444)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 77775 444444433
No 257
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=27.14 E-value=1.3e+02 Score=32.93 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=75.6
Q ss_pred CCCCEEEE--eCCCCcchHHHHHHhcCCCEEEEecCCCCC--CcceEEccCCCccchhhhhhhcccccchhcchhhhhhh
Q psy3759 155 IIPDAIFI--IDVGYHKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELR 230 (844)
Q Consensus 155 ~~P~~vii--~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr 230 (844)
+-||.|++ .|+..-..++++|..-|||||.+ |++.+. ....|.-. |+..+=....+.+.+.+-.+
T Consensus 90 ~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~-d~~~~~~~~~~~~vg~---dn~~~G~~~a~~l~~~~~~~------- 158 (322)
T COG1879 90 QGVDAIIINPVDPDALTPAVKKAKAAGIPVVTV-DSDIPGPGDRVAYVGS---DNYKAGRLAAEYLAKALGGK------- 158 (322)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEE-ecCCCCCCceeEEEec---CcHHHHHHHHHHHHHHhCCC-------
Confidence 46999998 46777788999999999999988 444333 23444433 44444444444444433221
Q ss_pred cccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEeCCEEEEEEEecCCchhccchHHHHHH
Q psy3759 231 SKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFS 310 (844)
Q Consensus 231 ~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~~~~gviveln~etdfvA~n~~f~~la 310 (844)
|. .....|...-.-...|.+|...+.++..-. ..|.....+|.. .+.+
T Consensus 159 ---g~--------v~~~~g~~~~~~~~~R~~G~~~~l~~~~~~---------------~~v~~~~~~~~~------~~~a 206 (322)
T COG1879 159 ---GK--------VVVLVGSPGNSSAEERVKGFRDALKEHPPD---------------IEVVDVQTGDWD------RDKA 206 (322)
T ss_pred ---Ce--------EEEEecCCCCchHHHHHhhHHHHHHhCCCc---------------EEEeeccCCccc------HHHH
Confidence 11 112223333334556666766665442211 112222223322 3567
Q ss_pred HHHHHHHHhcCCCChhhhccccccCCCccHH
Q psy3759 311 KKIAKLITENTPINLDQLNNLKIKNNLLTVD 341 (844)
Q Consensus 311 ~~ia~~iaa~~p~~~~~l~q~~v~~~~~tv~ 341 (844)
.+++..+.+.+| ++.-.|..++...+.
T Consensus 207 ~~~~~~~L~~~p----di~~i~~~~d~~a~g 233 (322)
T COG1879 207 LEVMEDLLAANP----DIDGIYAANDGMALG 233 (322)
T ss_pred HHHHHHHHHhCC----CceEEEECCchhHHH
Confidence 888888888888 333444444444444
No 258
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=27.07 E-value=97 Score=32.51 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCCc--chHHHHHHhcCCCEEEEecCCCCCCcceEEc
Q psy3759 156 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVI 199 (844)
Q Consensus 156 ~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypI 199 (844)
.+|.||+.....+ ...+.++...|||+|.+ |+..++..+.|.-
T Consensus 60 ~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~-~~~~~~~~~~~v~ 104 (272)
T cd06300 60 GVDAIIINPASPTALNPVIEEACEAGIPVVSF-DGTVTTPCAYNVN 104 (272)
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-ecCCCCCceeEec
Confidence 6999999765543 34678999999999998 4433323344433
No 259
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=26.98 E-value=4e+02 Score=29.35 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=24.2
Q ss_pred CCEEEEeCC-CCcchHHHHHHhcCCCEEEEecCCCCCCc
Q psy3759 157 PDAIFIIDV-GYHKGAVSEAIKLNIPIIGVVDTNHSPDG 194 (844)
Q Consensus 157 P~~vii~~~-~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~ 194 (844)
-|+++..+- ..-..++-||...|+|+|+ .|....++.
T Consensus 273 adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-s~~~g~~e~ 310 (374)
T TIGR03088 273 LDLFVLPSLAEGISNTILEAMASGLPVIA-TAVGGNPEL 310 (374)
T ss_pred cCEEEeccccccCchHHHHHHHcCCCEEE-cCCCCcHHH
Confidence 566555432 2235689999999999998 455444443
No 260
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=26.78 E-value=86 Score=32.85 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=27.9
Q ss_pred CCCEEEEeCCCC--cchHHHHHHhcCCCEEEEecCCCCCCcceE
Q psy3759 156 IPDAIFIIDVGY--HKGAVSEAIKLNIPIIGVVDTNHSPDGINY 197 (844)
Q Consensus 156 ~P~~vii~~~~~--~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~y 197 (844)
.+|.+|+..+.. ....++++...|||+|.+ |++..+..+.+
T Consensus 55 ~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~-~~~~~~~~~~~ 97 (273)
T cd06305 55 KVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF-DVDSDNPKVNN 97 (273)
T ss_pred CCCEEEEecCChhhhHHHHHHHHHcCCCEEEe-cCCCCCCccce
Confidence 589999876543 345688999999999976 54433333444
No 261
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=26.77 E-value=1.5e+02 Score=34.05 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=60.6
Q ss_pred eeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCCcceec-CCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3759 712 KIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQ-GNIIYVSIPPLTKERREEIVKLIKNITEETKI 785 (844)
Q Consensus 712 ~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi~~s~l~~~p~~~-~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~ 785 (844)
+.-||-+++||.+.-.|+++..+....+++...++++.|..- +..+ +.+-.+.+|.|+.-++..+...+.|..
T Consensus 156 ~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekSv~~~~~eL~rA~~ 229 (413)
T PTZ00372 156 QAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKSYDAFLDDLQRCEQ 229 (413)
T ss_pred CEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999998777643 3444 888889999999988888877666543
No 262
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=26.74 E-value=2.1e+02 Score=29.96 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=33.8
Q ss_pred CCCEEEEeCCCCc--chHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhccccc
Q psy3759 156 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 218 (844)
Q Consensus 156 ~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ 218 (844)
.+|.+|+.....+ ..++.++...+||+|.+ |+........|.-+ |..++.......+..
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~ 117 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNV-NDKLIPNATAFVGT---DNKANGVRGAEWIID 117 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEE-CCCCCCccceEEec---CcHHHHHHHHHHHHH
Confidence 5898887543222 34678889999999965 65443333444322 344444444444443
No 263
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=26.72 E-value=4.1e+02 Score=22.74 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 764 LTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 837 (844)
Q Consensus 764 ~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 837 (844)
+|+|..+.|.+.+..+-.. -|-+..+.++.....|.+||+-....-++=|...+..|..++..+...
T Consensus 6 lT~~g~~~L~~EL~~L~~~-------~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~a 72 (74)
T PF03449_consen 6 LTPEGYEKLQAELEHLKNV-------ERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLARA 72 (74)
T ss_dssp EEHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6788877777666553221 334455556666667889999999999999999999999999988753
No 264
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=26.56 E-value=1.9e+02 Score=29.95 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCCEEEEe----CCC---CcchHHHHHHhcCCCEEEEec
Q psy3759 156 IPDAIFII----DVG---YHKGAVSEAIKLNIPIIGVVD 187 (844)
Q Consensus 156 ~P~~vii~----~~~---~~~~ai~Ea~~l~IP~i~i~D 187 (844)
.+|.||++ +|. .+...+++|...++|++|||=
T Consensus 46 ~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~ 84 (214)
T PRK07765 46 QFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCL 84 (214)
T ss_pred CCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEcc
Confidence 47778876 332 234678899888999999973
No 265
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=26.54 E-value=3.7e+02 Score=26.54 Aligned_cols=71 Identities=14% Similarity=0.006 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3759 769 REEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 839 (844)
Q Consensus 769 R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kek 839 (844)
|++-+..-=..+|+.|.....+..++...++...... .+-++-....++..++..++-..+++.+.+..++
T Consensus 36 R~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~ 107 (154)
T PRK06568 36 KILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQ 107 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444443332111 1112222233444444444444445444444333
No 266
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=26.32 E-value=81 Score=35.43 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=25.7
Q ss_pred CCCCEEEEeC-CCCcchHHHHHHhc--CCCEEEEe
Q psy3759 155 IIPDAIFIID-VGYHKGAVSEAIKL--NIPIIGVV 186 (844)
Q Consensus 155 ~~P~~vii~~-~~~~~~ai~Ea~~l--~IP~i~i~ 186 (844)
..||++|++| |.=|....+.+++. |||+|-.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi 109 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYI 109 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5799999998 55666688899998 69987654
No 267
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=26.24 E-value=2.6e+02 Score=28.04 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=19.9
Q ss_pred CCCEEEEeCCCCcc-hHHHHHH---hcCCCEEEEe-cCCCCCCc
Q psy3759 156 IPDAIFIIDVGYHK-GAVSEAI---KLNIPIIGVV-DTNHSPDG 194 (844)
Q Consensus 156 ~P~~vii~~~~~~~-~ai~Ea~---~l~IP~i~i~-Dt~~~~~~ 194 (844)
.-|-|+++.|..+. .|++-|. ..+||+|++| .....+++
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l 124 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDL 124 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTG
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCch
Confidence 46778888887666 5554444 4599999999 33334443
No 268
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=26.10 E-value=75 Score=35.41 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=41.8
Q ss_pred CCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCCc-------ceEEccCCCccchhhhhhhcccc
Q psy3759 156 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPDG-------INYVIPGNDDSAKSIALYTKGIV 217 (844)
Q Consensus 156 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~~-------i~ypIP~N~ds~~si~~~~~~l~ 217 (844)
..|++|+++..-+ ..+++.|...|+|+|+|++. +.... ...+||++.-+..|..+++..+.
T Consensus 78 ~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~-~~L~~~a~~~~~~~i~ip~~~~~r~s~~~ll~~l~ 149 (337)
T PRK08674 78 EKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITSG-GKLKEMAKEHGLPVIIVPGGYQPRAALGYLFTPLL 149 (337)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCC-chHHHHHHhcCCeEEEeCCCCcchhhHHHHHHHHH
Confidence 4688888875533 36788999999999999863 32222 26888888766666655555443
No 269
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=25.78 E-value=2e+02 Score=32.00 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCCEEEEeCCC-CcchHHHHHHhcCCCEEEE
Q psy3759 156 IPDAIFIIDVG-YHKGAVSEAIKLNIPIIGV 185 (844)
Q Consensus 156 ~P~~vii~~~~-~~~~ai~Ea~~l~IP~i~i 185 (844)
.||+|++++.. -.......|.+.|||++-.
T Consensus 85 kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 85 PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 69999998732 2334456678899999855
No 270
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=25.74 E-value=65 Score=31.76 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=30.0
Q ss_pred cCCcccHHHHHHHHHhcCCCCcceecCCeeEEe
Q psy3759 728 PFEKEMSSIIKKAINEANLGLNPTIQGNIIYVS 760 (844)
Q Consensus 728 ~~d~~~~~~i~kAi~~s~l~~~p~~~~~~i~v~ 760 (844)
--|....+.|.++|.++.+-++++..|+.+||.
T Consensus 99 GI~~e~AKkIvK~IKd~klKVqa~IQGd~vRVt 131 (161)
T PRK05412 99 GIDQELAKKIVKLIKDSKLKVQAQIQGDQVRVT 131 (161)
T ss_pred ccCHHHHHHHHHHHHhcCCceeEEecCcEEEEe
Confidence 347888999999999999999999999999975
No 271
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=25.50 E-value=1.7e+02 Score=24.99 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=29.6
Q ss_pred ecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 752 IQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKI 790 (844)
Q Consensus 752 ~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~i 790 (844)
.+++.+.+.-.+.+++..+++.+.+.+..++++.++|.+
T Consensus 34 ~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~L 72 (74)
T TIGR02609 34 EEEGGLKLKRFDEGKELEKKMQMAVERAMSKYDEALKEL 72 (74)
T ss_pred EECCEEEEEECCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544444334478999999999999999999998864
No 272
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=25.42 E-value=2.4e+02 Score=31.51 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=24.7
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEe
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 186 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~ 186 (844)
.||+|+-+.-...-.++.-|..+++|++-.-
T Consensus 91 kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 91 KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred CCCEEEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 6999998776555567899999999986553
No 273
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.36 E-value=1.1e+02 Score=31.79 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=35.4
Q ss_pred CCCEEEEeCCCCcc-hHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhccc
Q psy3759 156 IPDAIFIIDVGYHK-GAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 216 (844)
Q Consensus 156 ~P~~vii~~~~~~~-~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l 216 (844)
.+|.+|+.....+. .+++++...|||+|.+ |+..+...+.|.-+-| ..+.+..+..|
T Consensus 55 ~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~d~---~~~~~~~~~~l 112 (268)
T cd06289 55 GVAGIILCPAAGTSPDLLKRLAESGIPVVLV-AREVAGAPFDYVGPDN---AAGARLATEHL 112 (268)
T ss_pred CCCEEEEeCCCCccHHHHHHHHhcCCCEEEE-eccCCCCCCCEEeecc---hHHHHHHHHHH
Confidence 58999998655432 3788999999999987 4443333455544433 33444444433
No 274
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=25.22 E-value=1.5e+02 Score=35.86 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhccccCCCCCCCEEEEeC-CCCcchHHHHHHhcCC--CEEEEe
Q psy3759 136 FYRKQMKLNRVIGGIKNMNIIPDAIFIID-VGYHKGAVSEAIKLNI--PIIGVV 186 (844)
Q Consensus 136 ~~r~~~kl~~~~~g~~~~~~~P~~vii~~-~~~~~~ai~Ea~~l~I--P~i~i~ 186 (844)
+.|..+++.+.+. ...||++|++| |.=|-...+.+++.|| |||-.+
T Consensus 295 l~~~~~~l~~~i~-----~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYV 343 (608)
T PRK01021 295 LWYRYRKLYKTIL-----KTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYV 343 (608)
T ss_pred HHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 3444444444442 35799999998 5667778899999996 976443
No 275
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.08 E-value=1.2e+02 Score=31.83 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=29.7
Q ss_pred CCCCEEEEeCCCCc--chHHHHHHhcCCCEEEEecCCCCC--CcceEEcc
Q psy3759 155 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIP 200 (844)
Q Consensus 155 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP 200 (844)
..+|.||+.....+ ...++++...|||+|.+ |++.+. ..+.|.-+
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~-~~~~~~~~~~~~~v~~ 102 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV-DSSINLEAGVVTQVQS 102 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEe-cCCCCCCcCeEEEEec
Confidence 36999998765444 34678999999999987 443322 33455444
No 276
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=24.70 E-value=2.2e+02 Score=31.60 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHH
Q psy3759 768 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYD 818 (844)
Q Consensus 768 ~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~ 818 (844)
.|++..+...+..++.|..-+.-|+.-.++-++.++-..+|+++.++.+++
T Consensus 263 ~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~lspeeQrK~eeK 313 (321)
T PF07946_consen 263 NREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKLSPEEQRKYEEK 313 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344555555555555555444444443333333333334666776666544
No 277
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.65 E-value=3.7e+02 Score=27.10 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 761 IPPLTK--ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINK 837 (844)
Q Consensus 761 iP~~T~--E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 837 (844)
+||++. +.|++.++.--..+++.+......+.++...+.+.++.. .+-++-....++..+.+.++.-.+++.+.+.-
T Consensus 53 ~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea 132 (181)
T PRK13454 53 LPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAES 132 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355432 455555555556677788777778877777777764432 24444445555666666666666666666655
Q ss_pred Hhhh
Q psy3759 838 EKEI 841 (844)
Q Consensus 838 ekel 841 (844)
+++|
T Consensus 133 ~~~I 136 (181)
T PRK13454 133 EKRI 136 (181)
T ss_pred HHHH
Confidence 5544
No 278
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=24.63 E-value=1.6e+02 Score=28.57 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=37.5
Q ss_pred EeecccccccCCCC-CCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcC
Q psy3759 577 KATKVDGIYNSDPN-KCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEG 646 (844)
Q Consensus 577 ilTDVdGVyt~dP~-~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~G 646 (844)
+++|+||++..++. ..++.+.+..+...+ ..+++...+.|+.+.|+++.........+..
T Consensus 4 ~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~----------~~~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~ 64 (154)
T TIGR01670 4 LILDVDGVLTDGKIYYTNNGEEIKAFNVRD----------GYGIRCALKSGIEVAIITGRKAKLVEDRCKT 64 (154)
T ss_pred EEEeCceeEEcCeEEECCCCcEEEEEechh----------HHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Confidence 46799999986432 112333444432221 1266777788999999988776666666653
No 279
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.61 E-value=1.2e+02 Score=31.72 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=36.1
Q ss_pred CCCCEEEEeCCCCc-----chHHHHHHhcCCCEEEEecCCCCC-CcceEEccCCCccchhhhhhhccccc
Q psy3759 155 IIPDAIFIIDVGYH-----KGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGNDDSAKSIALYTKGIVD 218 (844)
Q Consensus 155 ~~P~~vii~~~~~~-----~~ai~Ea~~l~IP~i~i~Dt~~~~-~~i~ypIP~N~ds~~si~~~~~~l~~ 218 (844)
..+|.+|++.+..+ ..++.++.+.+||+|.+ |++.+. ..+++... |...+....+..|.+
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i-~~~~~~~~~~~~V~~---d~~~~~~~~~~~l~~ 119 (273)
T cd06292 54 RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV-NGRAPPPLKVPHVST---DDALAMRLAVRHLVA 119 (273)
T ss_pred cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE-cCCCCCCCCCCEEEE---CcHHHHHHHHHHHHH
Confidence 36999999764432 23488999999999987 555432 22444333 444455555555543
No 280
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=24.61 E-value=3.3e+02 Score=26.61 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 771 EIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 771 ~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
+.-+.+...-++++..+...|.++.+-+....... ...++-...++++.+.+.++..++++.--+...++|
T Consensus 67 ~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l 138 (156)
T CHL00118 67 EILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSL 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555544444443332211 134566777888888888888888877655544443
No 281
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=24.44 E-value=1.1e+02 Score=32.68 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=36.5
Q ss_pred cEEEEeecccccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHc
Q psy3759 573 EIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 645 (844)
Q Consensus 573 d~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~ 645 (844)
+..++++|+||=+..+.+ . ++.. -..|...+.+.|++++|++|+....+..++.
T Consensus 6 ~~~lI~~DlDGTLL~~~~------~---i~~~----------~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~ 59 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSHT------Y---DWQP----------AAPWLTRLREAQVPVILCSSKTAAEMLPLQQ 59 (271)
T ss_pred CCeEEEEeCccCCcCCCC------c---CcHH----------HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHH
Confidence 345668999998864321 1 1111 1246777788999999999998877766644
No 282
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=24.36 E-value=1.3e+02 Score=31.06 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=26.4
Q ss_pred CCEEEEe--CCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccC
Q psy3759 157 PDAIFII--DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPG 201 (844)
Q Consensus 157 P~~vii~--~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~ 201 (844)
.++||+. |+.-|..+..+|...|||+-. -.+|+.-||..|+
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~ilvn~----~d~~e~~~f~~pa 112 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGVPVNV----VDDPELCSFIFPS 112 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCCEEEE----CCCcccCeEEEee
Confidence 5666654 222457889999999999732 2345555666664
No 283
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=24.34 E-value=95 Score=33.65 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCCCEEEEeCCCCc--chHHHHHHhcCCCEEEEecCCCCCC-cceEEccCCCccchhhhhhhcccc
Q psy3759 155 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPD-GINYVIPGNDDSAKSIALYTKGIV 217 (844)
Q Consensus 155 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~i~Dt~~~~~-~i~ypIP~N~ds~~si~~~~~~l~ 217 (844)
+.||.+|+..+..+ ...++++...+||+|.+ |+..+.. ...|.-+ |+..+-+.....|.
T Consensus 53 ~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~-d~~~~~~~~~~~V~~---d~~~~g~~~~~~L~ 114 (302)
T TIGR02634 53 RGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAY-DRLINDADIDFYLSF---DNEKVGEMQARAVL 114 (302)
T ss_pred cCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEe-cCcCCCCCccEEEec---CHHHHHHHHHHHHH
Confidence 36999998865433 46788999999999977 5544322 2234333 44555555555554
No 284
>CHL00101 trpG anthranilate synthase component 2
Probab=24.20 E-value=2.2e+02 Score=28.75 Aligned_cols=32 Identities=25% Similarity=0.073 Sum_probs=21.8
Q ss_pred CCCEEEEeCCCC------cchHHHHHHhcCCCEEEEec
Q psy3759 156 IPDAIFIIDVGY------HKGAVSEAIKLNIPIIGVVD 187 (844)
Q Consensus 156 ~P~~vii~~~~~------~~~ai~Ea~~l~IP~i~i~D 187 (844)
.||.||++.-.. ....+.++...++|+.|||=
T Consensus 43 ~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl 80 (190)
T CHL00101 43 NIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL 80 (190)
T ss_pred CCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence 589988875321 23455566777999999973
No 285
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=24.10 E-value=2e+02 Score=32.62 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=22.4
Q ss_pred CCCEEEEeCCCC-cchHHHHHHhcCCCEEEE
Q psy3759 156 IPDAIFIIDVGY-HKGAVSEAIKLNIPIIGV 185 (844)
Q Consensus 156 ~P~~vii~~~~~-~~~ai~Ea~~l~IP~i~i 185 (844)
.||+||.+|-.. +-...+-|+.+|||+|-.
T Consensus 89 kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 89 KPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred CCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 699999999422 333556889999999844
No 286
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=24.00 E-value=3.4e+02 Score=28.92 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3759 780 TEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840 (844)
Q Consensus 780 ~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 840 (844)
+|+.+..--..+.++.++++...+.. .+-++-....+++.+.+.++--.+++.+.....++
T Consensus 48 Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ 109 (250)
T PRK14474 48 AEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQ 109 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333332111 12223333344455555555555555555544433
No 287
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=23.35 E-value=4.2e+02 Score=29.52 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCcccHHHHHHHHHhcCCCCccee---cCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy3759 729 FEKEMSSIIKKAINEANLGLNPTI---QGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK 805 (844)
Q Consensus 729 ~d~~~~~~i~kAi~~s~l~~~p~~---~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~ 805 (844)
+...-.-.+.|-+..+|..+.|.. ....- -.+++|.|+.+.+.+++..+..+..+...-++..+++|+ .+
T Consensus 216 i~~~k~~EVqky~t~tnH~~~~~~~~~s~~~w----~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~~~~e~lk~---~G 288 (332)
T COG1638 216 IYSAKLYEVQKYLTLTNHIYLPLAVLVSKAFW----DSLPEEDQTILLEAAKEAAEEQRKLVEELEDELLEKLKE---AG 288 (332)
T ss_pred HhhccHHHHhHHhhhccccccceeeEEcHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC
Confidence 334445577788888888888763 22222 378999999999999999988888777666666666654 33
Q ss_pred -CCCchhhhh-HHHHHHHHHHHHHHH
Q psy3759 806 -ILSVDNEYR-AQYDIQKLTDKFILE 829 (844)
Q Consensus 806 -~~s~D~~~~-~~~~iq~l~~~~~~~ 829 (844)
.+-+.+... .++-.+.+.+.|.+.
T Consensus 289 v~v~~~~~~~~~~~~~~~~~~~~~~~ 314 (332)
T COG1638 289 VEVVEPDAAEAFREAAKPVYDEFAKK 314 (332)
T ss_pred CEEecCCchHHHHHHHHHHHHHHHhh
Confidence 333333333 667777777777777
No 288
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=23.34 E-value=3.6e+02 Score=28.62 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3759 815 AQYDIQKLTDKFILEINQLLINKEK 839 (844)
Q Consensus 815 ~~~~iq~l~~~~~~~id~~~~~kek 839 (844)
++++-+++.++--.+++.+.+....
T Consensus 84 A~~~~~~i~~~A~~ea~~~~~~a~~ 108 (246)
T TIGR03321 84 AQAERQRLLDEAREEADEIREKWQE 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 289
>PRK13566 anthranilate synthase; Provisional
Probab=23.02 E-value=1.8e+02 Score=36.11 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=50.8
Q ss_pred CCCeEEEEecccchHHHHHHHHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHH
Q psy3759 62 SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQM 141 (844)
Q Consensus 62 ~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~ 141 (844)
+|.+||+|..-..+...+..+.+..|..+..-+|-- ....+
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~----~~~~~----------------------------------- 565 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF----AEEML----------------------------------- 565 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC----ChhHh-----------------------------------
Confidence 567899999887777888888888887654433310 00000
Q ss_pred HHHHhhccccCCCCCCCEEEEeC-CC-----CcchHHHHHHhcCCCEEEEec
Q psy3759 142 KLNRVIGGIKNMNIIPDAIFIID-VG-----YHKGAVSEAIKLNIPIIGVVD 187 (844)
Q Consensus 142 kl~~~~~g~~~~~~~P~~vii~~-~~-----~~~~ai~Ea~~l~IP~i~i~D 187 (844)
. ...||.||++. |. .....+++|...++|+.|||=
T Consensus 566 --~---------~~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iPILGICl 606 (720)
T PRK13566 566 --D---------RVNPDLVVLSPGPGRPSDFDCKATIDAALARNLPIFGVCL 606 (720)
T ss_pred --h---------hcCCCEEEECCCCCChhhCCcHHHHHHHHHCCCcEEEEeh
Confidence 0 02589888863 21 356788999999999999983
No 290
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.00 E-value=6.3e+02 Score=26.08 Aligned_cols=75 Identities=11% Similarity=0.047 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3759 767 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841 (844)
Q Consensus 767 E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 841 (844)
|.|++.+..--..+++.|...-..+.++.+.+.+-++.. .+-++-....+++.+...++-..+++.+++..+++|
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I 158 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARI 158 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544555577777777777777777776653321 233333444555555556666666666666666655
No 291
>KOG4841|consensus
Probab=22.97 E-value=37 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=26.2
Q ss_pred cchHHHHHHHHhccCCHHHHHHHHHHHhh
Q psy3759 235 APIMECKKALIEANGKLSKAEEILRIKLG 263 (844)
Q Consensus 235 ~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~ 263 (844)
+.+-||-+|-.|--+++.+|.+.|+.||+
T Consensus 65 ATfnDc~eA~veL~~~IkEAr~~L~rkg~ 93 (95)
T KOG4841|consen 65 ATFNDCEEAAVELQSQIKEARADLARKGL 93 (95)
T ss_pred eccCCcHHHHHHHHHHHHHHHHHHHHccC
Confidence 35789999999999999999999999885
No 292
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=22.78 E-value=1.4e+02 Score=30.70 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=35.7
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhccc
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 216 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l 216 (844)
.||.+++.....+...+.++...+||+|++ |+......+.|.-+ |...+.......+
T Consensus 55 ~~d~iii~~~~~~~~~~~~~~~~~ipvv~~-~~~~~~~~~~~v~~---d~~~~g~~~~~~l 111 (264)
T cd06267 55 RVDGIILAPSRLDDELLEELAALGIPVVLV-DRPLDGLGVDSVGI---DNRAGAYLAVEHL 111 (264)
T ss_pred CcCEEEEecCCcchHHHHHHHHcCCCEEEe-cccccCCCCCEEee---ccHHHHHHHHHHH
Confidence 699999887666655589999999999997 44332223333322 3344445444444
No 293
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=22.77 E-value=4.2e+02 Score=25.85 Aligned_cols=21 Identities=5% Similarity=0.120 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy3759 780 TEETKISIRKIRRDSNENLKK 800 (844)
Q Consensus 780 ~e~~k~~iR~iR~~~~~~~kk 800 (844)
+++.+......+.++...+.+
T Consensus 45 Ae~~~~eA~~~~~~~e~~L~~ 65 (159)
T PRK09173 45 ARRLREEAQQLLAEYQRKRKE 65 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 294
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=22.74 E-value=1.2e+02 Score=32.06 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=36.6
Q ss_pred CCCCEEEEeCCCCcch-HHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccc
Q psy3759 155 IIPDAIFIIDVGYHKG-AVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDA 219 (844)
Q Consensus 155 ~~P~~vii~~~~~~~~-ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~a 219 (844)
..||.||+.....+.. .+.++...|||+|.+-+...++....|. ..|...+-+.....|.+.
T Consensus 56 ~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~V---~~d~~~~g~~~~~~l~~~ 118 (268)
T cd06306 56 WGADAILLGAVSPDGLNEILQQVAASIPVIALVNDINSPDITAKV---GVSWYEMGYQAGEYLAQR 118 (268)
T ss_pred cCCCEEEEcCCChhhHHHHHHHHHCCCCEEEeccCCCCcceeEEe---cCChHHHHHHHHHHHHHH
Confidence 3699999876544432 5899999999999883221222223343 234445555555555443
No 295
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=22.61 E-value=2.1e+02 Score=30.17 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.0
Q ss_pred CCCEEEEeCCC---CcchHHHHHHh-cCCCEEEEecCC
Q psy3759 156 IPDAIFIIDVG---YHKGAVSEAIK-LNIPIIGVVDTN 189 (844)
Q Consensus 156 ~P~~vii~~~~---~~~~ai~Ea~~-l~IP~i~i~Dt~ 189 (844)
.||++|+++|| .-....||..+ .|||+|-|-|.-
T Consensus 60 ~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 60 KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCC
Confidence 79999999998 34455566654 699999997753
No 296
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.50 E-value=1.8e+02 Score=30.75 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy3759 761 IPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKL-LKNKILSVDNEYRAQYDIQKLTDKFILEINQLL 834 (844)
Q Consensus 761 iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~-~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 834 (844)
-|.+|.|-|.-+.-..|.....-|.++|.+..--.+.-.+- .+...+-++-.++++++|..+-++.+.-||..+
T Consensus 31 ~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~L 105 (236)
T PF00244_consen 31 NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKIEDELIDICNEIIRLIDKSL 105 (236)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999998876443322110 001112344455566666666666666666533
No 297
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=22.42 E-value=4e+02 Score=33.71 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3759 764 LTKERREEIVKLIKNITE--------ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 835 (844)
Q Consensus 764 ~T~E~R~~l~K~~k~~~e--------~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~ 835 (844)
.|.|.+.+++..+..++- .|..++|..+. .++...+++ .|++|++++-+++.+.+++|+..+-+-..
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~----aL~eAL~~g-AsdeEI~~Lm~eLR~Am~~ym~~LAeq~~ 548 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDLSDAERRLRAAQD----ALKDALERG-ASDEEIKQLTDKLRAAMQTYMRQLAQQLR 548 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH----HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788889999999888764 44445555444 444443343 79999999999999999999998876544
No 298
>COG4517 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.08 E-value=1.1e+02 Score=27.26 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=38.3
Q ss_pred HHHHHHhhccccCCCCCC-CEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCc
Q psy3759 140 QMKLNRVIGGIKNMNIIP-DAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDD 204 (844)
Q Consensus 140 ~~kl~~~~~g~~~~~~~P-~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~d 204 (844)
-+||+..|.|++.. .+| ..||=+| |-.++|-|+|+=...-.+....-||.|+|.+
T Consensus 54 eEkLk~eF~gv~rs-~~PmhaivRId---------eV~~kG~~~Isea~g~~nVmpFp~p~pg~k~ 109 (109)
T COG4517 54 EEKLKHEFAGVKRS-HLPMHAIVRID---------EVDKKGQSVISEAEGEKNVMPFPAPFPGRKP 109 (109)
T ss_pred HHHHHHHhhccccc-cCcceeEEeee---------ehhhcCCeeehhccCcCceeecCcCCCCCCC
Confidence 46788999998754 344 3444344 6678888888776655666667888998853
No 299
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.05 E-value=4.5e+02 Score=26.21 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 776 IKNITEETKISIRKIRRDSNENLK 799 (844)
Q Consensus 776 ~k~~~e~~k~~iR~iR~~~~~~~k 799 (844)
.++..++++.....++.++.+...
T Consensus 75 ~e~~L~~a~~ea~~ii~~A~~~a~ 98 (175)
T PRK14472 75 NRELLAKADAEADKIIREGKEYAE 98 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544443
No 300
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.03 E-value=4.8e+02 Score=26.88 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=57.8
Q ss_pred HHHHHHHhhccCCCeEEEEe-cccchHHHHHHHHHHcCCccccccccC-CCCCChHhHHHHHHHHHHHHhhhccCccccC
Q psy3759 51 KAIRYIYQLGFSKGTLLFVG-TKRQARGVIANEAVRAGMPFIDQRWLG-GLLTNFKTIKTSIQRLKEMDLFITNGSIRKL 128 (844)
Q Consensus 51 ~a~~~i~~~~~~~~~iLfv~-t~~~~~~~v~~~a~~~~~~~v~~rw~~-G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~ 128 (844)
.+......+..-|=+++=|. +.+...+.|+++.++.. +=++| ||.+|..+.+..+. .|
T Consensus 17 ~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~-----~~~vGAGTVl~~e~a~~ai~----------aG----- 76 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVE-----EAIVGAGTILNAKQFEDAAK----------AG----- 76 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCC-----CCEEeeEeCcCHHHHHHHHH----------cC-----
Confidence 34444444444444444344 67778888888876653 24677 99999887644432 12
Q ss_pred ChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcchHHHHHHhcCCCEEEEe
Q psy3759 129 SKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 186 (844)
Q Consensus 129 ~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~ 186 (844)
.=|++.|.-+.-.++.|+..++|.+-=|
T Consensus 77 ------------------------------A~FivSP~~~~~vi~~a~~~~i~~iPG~ 104 (201)
T PRK06015 77 ------------------------------SRFIVSPGTTQELLAAANDSDVPLLPGA 104 (201)
T ss_pred ------------------------------CCEEECCCCCHHHHHHHHHcCCCEeCCC
Confidence 2278999999999999999999976443
No 301
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=21.84 E-value=1.2e+02 Score=31.68 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCC--cchHHHHHHhcCCCEEEEecCCCCC--CcceEEcc
Q psy3759 156 IPDAIFIIDVGY--HKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIP 200 (844)
Q Consensus 156 ~P~~vii~~~~~--~~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i~ypIP 200 (844)
.+|.+|+..... ....+.++...+||+|.+ |++.+. ..+.|.-+
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~~~V~~ 103 (272)
T cd06301 56 GVDAIIVVPVDTAATAPIVKAANAAGIPLVYV-NRRPENAPKGVAYVGS 103 (272)
T ss_pred CCCEEEEecCchhhhHHHHHHHHHCCCeEEEe-cCCCCCCCCeeEEEec
Confidence 589998875543 346788999999999966 554433 34555433
No 302
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=21.61 E-value=1.7e+02 Score=29.33 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=34.8
Q ss_pred cCCCCCCCcCcccccc---CCee--EeeHHHHHH-HHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcC
Q psy3759 19 TRFWNPKMSSYIFGHR---NKIH--IINLEKTLY-MYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 87 (844)
Q Consensus 19 ~~~wnp~m~~yi~g~r---~~~~--Iinl~~T~~-~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 87 (844)
...|+|.|-.-.-+.- +++. +++....-. ...-+..++..+.. .|.-++|.|+......++......+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~-~G~~l~I~Sn~~~~~~~~~~L~~~~ 84 (174)
T TIGR01685 11 GTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKD-AGTYLATASWNDVPEWAYEILGTFE 84 (174)
T ss_pred CCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHH-CCCEEEEEeCCCChHHHHHHHHhCC
Confidence 4689999976544321 2222 555444332 33445556666533 4555566665533334444555554
No 303
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.59 E-value=2.1e+02 Score=31.53 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=25.2
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCC
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNH 190 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~ 190 (844)
.||+.+=. .+..+-|=|.-+|||.|.++||-.
T Consensus 84 kpdv~i~~---~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 84 KPDVAIGK---HSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred CCceEeec---CCcchhhHHhhcCCceEEecCChh
Confidence 69977753 356677888999999999999843
No 304
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=21.54 E-value=3.9e+02 Score=28.85 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHhhccCC-CeEEEEecccchH-------HHHHHHHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccC
Q psy3759 52 AIRYIYQLGFSK-GTLLFVGTKRQAR-------GVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNG 123 (844)
Q Consensus 52 a~~~i~~~~~~~-~~iLfv~t~~~~~-------~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~ 123 (844)
+.....++..+| ++|.|++...... .-..+..+..|..+....+..+..+ +..-.+...++
T Consensus 164 ~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l---------- 232 (329)
T TIGR01481 164 TKEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYS-YDAGYKAFAEL---------- 232 (329)
T ss_pred HHHHHHHHHHCCCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCC-hHHHHHHHHHH----------
Q ss_pred ccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcchHHHHHHhcCC------CEEEEecCC----CCCC
Q psy3759 124 SIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI------PIIGVVDTN----HSPD 193 (844)
Q Consensus 124 ~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~I------P~i~i~Dt~----~~~~ 193 (844)
+...|+.||..+..--.-+++.+...|+ -+||+-|+. ..|.
T Consensus 233 -----------------------------l~~~p~ai~~~~d~~A~g~~~al~~~g~~vP~dvsvvgfd~~~~~~~~~p~ 283 (329)
T TIGR01481 233 -----------------------------KGSLPTAVFVASDEMAAGILNAAMDAGIKVPEDLEVITSNNTRLTEMVRPQ 283 (329)
T ss_pred -----------------------------hCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeCCchHHhhcCCC
Q ss_pred cceEEccCCCccchhhhhhhccccc
Q psy3759 194 GINYVIPGNDDSAKSIALYTKGIVD 218 (844)
Q Consensus 194 ~i~ypIP~N~ds~~si~~~~~~l~~ 218 (844)
+.++-.|...=...++.+++..+..
T Consensus 284 lttv~~~~~~~g~~Av~~L~~~i~~ 308 (329)
T TIGR01481 284 LSTIIQPLYDIGAVAMRLLTKYMND 308 (329)
T ss_pred CcEEecCHHHHHHHHHHHHHHHhcC
No 305
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.26 E-value=70 Score=29.57 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCCCC----cceEEccCCCcc
Q psy3759 157 PDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD----GINYVIPGNDDS 205 (844)
Q Consensus 157 P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~~~----~i~ypIP~N~ds 205 (844)
=|++|++....+ ..++++|++.|.|+|+|++...+|- .+.+.+|.++..
T Consensus 54 ~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 54 DDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPTGEES 110 (131)
T ss_dssp TEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEESSCGS
T ss_pred cceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecCCCcc
Confidence 377777764433 3567788999999999997765432 245666666555
No 306
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=21.13 E-value=71 Score=31.50 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=27.6
Q ss_pred ecCCcccHHHHHHHHHhcCCCCcceecCCeeEEeC
Q psy3759 727 QPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSI 761 (844)
Q Consensus 727 ~~~d~~~~~~i~kAi~~s~l~~~p~~~~~~i~v~i 761 (844)
.--|....+.|.+.|.++.+-++++..|+.+||.=
T Consensus 98 ~GI~~d~AKkIvK~IKd~klKVqa~IQgd~vRVtg 132 (160)
T PF04461_consen 98 QGIDQDTAKKIVKLIKDSKLKVQAQIQGDQVRVTG 132 (160)
T ss_dssp -S--HHHHHHHHHHHHHH--SEEEEEETTEEEEEE
T ss_pred cccCHHHHHHHHHHHHhcCCceeEEecCcEEEEec
Confidence 34478899999999999999999999999999863
No 307
>PF15605 Toxin_52: Putative toxin 52
Probab=21.10 E-value=3.5e+02 Score=24.68 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3759 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 835 (844)
Q Consensus 781 e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~ 835 (844)
.++-..+||+++. +++.-++..+|++...-++.++++.+ .++++|+++|.
T Consensus 53 ~da~~GL~n~~~~----le~~L~np~l~~~~r~~lq~~l~ea~-~~l~kiE~~~~ 102 (103)
T PF15605_consen 53 QDAYRGLVNRKRT----LEGSLKNPNLSGRTRELLQSKLNEAN-NYLDKIEDFFP 102 (103)
T ss_pred HHHHHHHHHHHHH----HHHhcCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 3455677777765 44434678889999888999988754 68899998875
No 308
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=21.09 E-value=6e+02 Score=22.68 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3759 762 PPLTKERREEIVKLIKNITEETKI---SIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 835 (844)
Q Consensus 762 P~~T~E~R~~l~K~~k~~~e~~k~---~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~ 835 (844)
..+|+|.++++-+...+...+.+. .+|..|.+....+ ......++.+..+-+++..+..+......+.+-
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll----~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~ 112 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALL----AAPPPDEAAIEALLEEIREAQAELRQERLEHLL 112 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999998888777766655444 4444444443333 334466777777777777777666665555443
No 309
>PRK05748 replicative DNA helicase; Provisional
Probab=21.02 E-value=6.9e+02 Score=28.93 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=48.6
Q ss_pred CCCcCccccccCC-eeEe----eHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHH-HHcCCccccccccC
Q psy3759 24 PKMSSYIFGHRNK-IHII----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLG 97 (844)
Q Consensus 24 p~m~~yi~g~r~~-~~Ii----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~ 97 (844)
|.+..++.|.+.| ..+| ..-||...+.-|++... .+|..++|++.--....++..+. ..++..+ .++..
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~---~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~--~~i~~ 265 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVAT---KTDKNVAIFSLEMGAESLVMRMLCAEGNIDA--QRLRT 265 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHH---hCCCeEEEEeCCCCHHHHHHHHHHHhcCCCH--HHhhc
Confidence 3445556677776 4444 67799988877766532 34778999998777777777763 4444432 23567
Q ss_pred CCCCCh
Q psy3759 98 GLLTNF 103 (844)
Q Consensus 98 G~lTN~ 103 (844)
|.|+..
T Consensus 266 ~~l~~~ 271 (448)
T PRK05748 266 GQLTDD 271 (448)
T ss_pred CCCCHH
Confidence 888753
No 310
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=20.97 E-value=1.6e+02 Score=30.69 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=35.9
Q ss_pred CCCEEEEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccc
Q psy3759 156 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 217 (844)
Q Consensus 156 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~ 217 (844)
.+|.+|+.....+...+.++...+||+|.+ |.......+.|.-+ |...+.+.....|.
T Consensus 55 ~vdgiii~~~~~~~~~~~~l~~~~ipvV~~-~~~~~~~~~~~v~~---d~~~~~~~~~~~l~ 112 (268)
T cd06298 55 QVDGIIFMGGKISEEHREEFKRSPTPVVLA-GSVDEDNELPSVNI---DYKKAAFEATELLI 112 (268)
T ss_pred cCCEEEEeCCCCcHHHHHHHhcCCCCEEEE-ccccCCCCCCEEEE---CcHHHHHHHHHHHH
Confidence 589999886654556788888899999888 33222223445433 33445555555443
No 311
>PRK06749 replicative DNA helicase; Provisional
Probab=20.89 E-value=7.4e+02 Score=28.68 Aligned_cols=162 Identities=13% Similarity=0.142 Sum_probs=84.0
Q ss_pred CCcCccccccCCeeEe-----eHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHH-cCCcccccccc-C
Q psy3759 25 KMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVR-AGMPFIDQRWL-G 97 (844)
Q Consensus 25 ~m~~yi~g~r~~~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~-~~~~~v~~rw~-~ 97 (844)
.+...+.|.+.|--|+ ..-||...+.-|.+.. .+|..++|++.--....++..+... ++..+ .++. |
T Consensus 175 ~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a----~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~~--~~l~~~ 248 (428)
T PRK06749 175 SLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAA----KSGAAVGLFSLEMSSKQLLKRMASCVGEVSG--GRLKNP 248 (428)
T ss_pred HHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHH----hcCCCEEEEEeeCCHHHHHHHHHHhccCCCH--HHHhcC
Confidence 3444566778774444 7889999998887775 4577899998776666666555443 44433 1333 2
Q ss_pred -CCCC--ChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCC--------C
Q psy3759 98 -GLLT--NFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDV--------G 166 (844)
Q Consensus 98 -G~lT--N~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~--------~ 166 (844)
|.|+ .|..+.+...++..+- =.+..-+.-....+.....++++..++ .|++|| +|- .
T Consensus 249 ~~~l~~~e~~~~~~a~~~l~~~~-----i~i~d~~~~t~~~I~~~~r~~~~~~~~------~~~lvv-IDyLqli~~~~~ 316 (428)
T PRK06749 249 KHRFAMEDWEKVSKAFAEIGELP-----LEIYDNAGVTVQDIWMQTRKLKRKHGD------KKILII-VDYLQLITGDPK 316 (428)
T ss_pred cccCCHHHHHHHHHHHHHHhcCC-----EEEECCCCCCHHHHHHHHHHHHHhcCC------CCcEEE-EeChhhcCCCCC
Confidence 3565 4554444444332210 011111111122334444455554322 244444 441 1
Q ss_pred --Ccc-hHHH--------HHHhcCCCEEEEecCCCCCCcceEEccCCCc
Q psy3759 167 --YHK-GAVS--------EAIKLNIPIIGVVDTNHSPDGINYVIPGNDD 204 (844)
Q Consensus 167 --~~~-~ai~--------Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~d 204 (844)
.++ ..+. =|..+++|||+++--|-+.+.-.-.-|.-+|
T Consensus 317 ~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsD 365 (428)
T PRK06749 317 HKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSD 365 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHh
Confidence 122 1121 2667899999998766554433333444333
No 312
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=20.82 E-value=2.4e+02 Score=29.90 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=55.9
Q ss_pred CEEEEeCCCCcch--HHHHHHhcCCCEEE-EecCCC--------CCCcceEEccCCCccchhhh---hhhcccccchhcc
Q psy3759 158 DAIFIIDVGYHKG--AVSEAIKLNIPIIG-VVDTNH--------SPDGINYVIPGNDDSAKSIA---LYTKGIVDAFLDA 223 (844)
Q Consensus 158 ~~vii~~~~~~~~--ai~Ea~~l~IP~i~-i~Dt~~--------~~~~i~ypIP~N~ds~~si~---~~~~~l~~ai~~g 223 (844)
.++++-.|..... =+.|-.+.||..|- +|+... ...+..+||| |.+..+.. -++.++...+..|
T Consensus 93 rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpip--Dg~aPs~~~i~~~l~~i~~~l~~g 170 (241)
T PTZ00393 93 KILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFP--DGDAPTVDIVSNWLTIVNNVIKNN 170 (241)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4444444554321 24777888888654 333222 2334778888 45554444 3455554444444
Q ss_pred hh----hhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759 224 KT----VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 261 (844)
Q Consensus 224 ~~----v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k 261 (844)
.. ++.=+.+ .|++- =-+|.+.+.+.++|++|+|+.
T Consensus 171 ~~VaVHC~AGlGR--TGtl~-AayLI~~GmspeeAI~~VR~~ 209 (241)
T PTZ00393 171 RAVAVHCVAGLGR--APVLA-SIVLIEFGMDPIDAIVFIRDR 209 (241)
T ss_pred CeEEEECCCCCCH--HHHHH-HHHHHHcCCCHHHHHHHHHHH
Confidence 42 1211222 34443 347888888999999999987
No 313
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=20.82 E-value=1.6e+02 Score=31.99 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=35.0
Q ss_pred CCCEEEEeCCCC-cchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhccc
Q psy3759 156 IPDAIFIIDVGY-HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 216 (844)
Q Consensus 156 ~P~~vii~~~~~-~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l 216 (844)
.+|.+|+..... +...+.++...+||+|. +|.+.+...+++..+-| ..+.+.....|
T Consensus 116 ~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~-~~~~~~~~~~~~V~~dn---~~~~~~~~~~L 173 (327)
T TIGR02417 116 QVDALIVASCMPPEDAYYQKLQNEGLPVVA-LDRSLDDEHFCSVISDD---VDAAAELIERL 173 (327)
T ss_pred CCCEEEEeCCCCCChHHHHHHHhcCCCEEE-EccccCCCCCCEEEeCc---HHHHHHHHHHH
Confidence 589888875443 44567888889999995 46654333456655544 33444444433
No 314
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=20.82 E-value=3.7e+02 Score=26.49 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 763 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLIN 836 (844)
Q Consensus 763 ~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~ 836 (844)
.||+|-.+.|.+.+..+-. .-|.+..+.++.....+.+||+-.+.+-++=|...+..+.+++..++.
T Consensus 6 ~lT~~g~~~L~~EL~~L~~-------~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~ 72 (157)
T PRK01885 6 YITREGYARLKQELDYLWR-------EERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLEN 72 (157)
T ss_pred ccCHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4899998888777665421 134445555555555677999999999999999999999999998864
No 315
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.81 E-value=5.6e+02 Score=26.58 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=58.9
Q ss_pred HHHHHHHHhhccCCCeEEEEe-cccchHHHHHHHHHHcCCccccccccC-CCCCChHhHHHHHHHHHHHHhhhccCcccc
Q psy3759 50 EKAIRYIYQLGFSKGTLLFVG-TKRQARGVIANEAVRAGMPFIDQRWLG-GLLTNFKTIKTSIQRLKEMDLFITNGSIRK 127 (844)
Q Consensus 50 ~~a~~~i~~~~~~~~~iLfv~-t~~~~~~~v~~~a~~~~~~~v~~rw~~-G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~ 127 (844)
..|..+...+...|=+++=|. +.+.+-+.++++.++.+... +=.+| ||.++..+.+..+. .
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p--~~~vGaGTV~~~~~~~~a~~----------a----- 87 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDP--EVLIGAGTVLDAVTARLAIL----------A----- 87 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCC--CeEEeeeeCCCHHHHHHHHH----------c-----
Confidence 344455555545444544444 55667788888877653210 12566 99999877543332 1
Q ss_pred CChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcchHHHHHHhcCCCEEEEecC
Q psy3759 128 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDT 188 (844)
Q Consensus 128 ~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~i~Dt 188 (844)
..=|++.|.-+.-.++.|+..+||.+-=|-|
T Consensus 88 ------------------------------GA~FivsP~~~~~v~~~~~~~~i~~iPG~~T 118 (213)
T PRK06552 88 ------------------------------GAQFIVSPSFNRETAKICNLYQIPYLPGCMT 118 (213)
T ss_pred ------------------------------CCCEEECCCCCHHHHHHHHHcCCCEECCcCC
Confidence 2227789999999999999999998765544
No 316
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=20.74 E-value=2.8e+02 Score=28.08 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=17.6
Q ss_pred EEEEecccchHHHHHHHHHHcCCccc
Q psy3759 66 LLFVGTKRQARGVIANEAVRAGMPFI 91 (844)
Q Consensus 66 iLfv~t~~~~~~~v~~~a~~~~~~~v 91 (844)
||+|.....+.+-+-.+....|..+.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~ 27 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVK 27 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEE
Confidence 78888777776666666666665543
No 317
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.58 E-value=1.4e+02 Score=31.82 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCCEEEEeCCCCc--chHHHHHHhcCCCEEEE
Q psy3759 156 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGV 185 (844)
Q Consensus 156 ~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~i 185 (844)
.||.+|+.....+ ...+.++...+||+|.+
T Consensus 55 ~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 55 GVDVLVIAPVDGEALASAVEKAADAGIPVIAY 86 (288)
T ss_pred CCCEEEEecCChhhHHHHHHHHHHCCCCEEEE
Confidence 6999998754333 45778999999999987
No 318
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.42 E-value=1.3e+02 Score=31.48 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=25.1
Q ss_pred CCCEEEEeCCCCc--chHHHHHHhcCCCEEEEecCCC
Q psy3759 156 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNH 190 (844)
Q Consensus 156 ~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~i~Dt~~ 190 (844)
.+|.+|+.....+ ...+.++...+||+|.+ |++.
T Consensus 56 ~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~-~~~~ 91 (275)
T cd06317 56 KVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT-NSNI 91 (275)
T ss_pred CCCEEEEecCCccccHHHHHHHHHCCCcEEEe-CCCC
Confidence 5999988765443 35678999999999955 5543
No 319
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=20.40 E-value=2.1e+02 Score=32.56 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCCCEEEEeC-CCCcchHHHHHHhcCCC
Q psy3759 155 IIPDAIFIID-VGYHKGAVSEAIKLNIP 181 (844)
Q Consensus 155 ~~P~~vii~~-~~~~~~ai~Ea~~l~IP 181 (844)
..||++|++| |.=|....+.+++.|+|
T Consensus 81 ~~pd~vIlID~pgFNlrlak~lk~~~~~ 108 (373)
T PF02684_consen 81 EKPDVVILIDYPGFNLRLAKKLKKRGIP 108 (373)
T ss_pred cCCCEEEEeCCCCccHHHHHHHHHhCCC
Confidence 5799999998 67788888999999999
No 320
>KOG2561|consensus
Probab=20.37 E-value=1.1e+02 Score=35.01 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=54.7
Q ss_pred ceEEccCCCccchhhhhhhcccccch--hcchhh-------------hhhh--cc-------cCcchHHHHHHHHhccCC
Q psy3759 195 INYVIPGNDDSAKSIALYTKGIVDAF--LDAKTV-------------GELR--SK-------TLAPIMECKKALIEANGK 250 (844)
Q Consensus 195 i~ypIP~N~ds~~si~~~~~~l~~ai--~~g~~v-------------~~lr--~~-------t~~~~~~ck~aL~~~~~d 250 (844)
--|.|-||+-.-+++.+=+.+|..-+ -+|+.. ++|. .+ -|.--.|.|-||..++||
T Consensus 251 Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaRlaLRsc~g~ 330 (568)
T KOG2561|consen 251 RLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDARLALRSCNGD 330 (568)
T ss_pred hhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHHHHHHhcccc
Confidence 45778899888899888888776533 223321 1111 11 267778999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhc
Q psy3759 251 LSKAEEILRIKLGKKILNI 269 (844)
Q Consensus 251 ~~~A~~~Lr~kg~~~a~kk 269 (844)
+|-|++++.+.....|.+|
T Consensus 331 Vd~AvqfI~erre~laq~R 349 (568)
T KOG2561|consen 331 VDSAVQFIIERREKLAQKR 349 (568)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999987777666
No 321
>PRK06771 hypothetical protein; Provisional
Probab=20.32 E-value=52 Score=29.41 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=21.1
Q ss_pred chhcchhhhhhhcccCcchHHHHHHHH
Q psy3759 219 AFLDAKTVGELRSKTLAPIMECKKALI 245 (844)
Q Consensus 219 ai~~g~~v~~lr~~t~~~~~~ck~aL~ 245 (844)
.....+.+|..|+.||+++.++|++-.
T Consensus 65 ~Gkki~AIK~~Re~tG~~L~eAK~yVD 91 (93)
T PRK06771 65 EGQTVTAVKRVREAFGFSLLEAKQYVD 91 (93)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHh
Confidence 334444689999999999999998753
No 322
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.29 E-value=5.2e+02 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759 776 IKNITEETKISIRKIRRDSNENLK 799 (844)
Q Consensus 776 ~k~~~e~~k~~iR~iR~~~~~~~k 799 (844)
.++...+++.....++.++....+
T Consensus 75 ~e~~l~~a~~ea~~ii~~a~~~a~ 98 (173)
T PRK13453 75 NKQKLKETQEEVQKILEDAKVQAR 98 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 323
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=20.19 E-value=4.4e+02 Score=22.94 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3759 778 NITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 839 (844)
Q Consensus 778 ~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kek 839 (844)
..+++.+..|..|+.. +++|.++.+....+.+.....+++++.++++.......+-..-+.
T Consensus 7 ~~v~~i~~~i~~i~~~-~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~ 67 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEK-LNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQ 67 (103)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
No 324
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=20.16 E-value=2.1e+02 Score=30.08 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=29.1
Q ss_pred CCEEEEe--CCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccC
Q psy3759 157 PDAIFII--DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPG 201 (844)
Q Consensus 157 P~~vii~--~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~ 201 (844)
.++||.. |+.-|..+..+|...++|+....| |..-||..|+
T Consensus 86 ~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~----p~~~dFi~PA 128 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD----YKKGLCIIPY 128 (223)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC----cccCeEEeee
Confidence 5777765 455777888899999999875533 4456676775
No 325
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=20.12 E-value=1.8e+02 Score=29.79 Aligned_cols=105 Identities=18% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCCCEEEEe--CCCCc-chHHHHHHh-cCCCEEEEecCCCCCCcceEEccCC-----Cccchhhhhhhcccccchhcchh
Q psy3759 155 IIPDAIFII--DVGYH-KGAVSEAIK-LNIPIIGVVDTNHSPDGINYVIPGN-----DDSAKSIALYTKGIVDAFLDAKT 225 (844)
Q Consensus 155 ~~P~~vii~--~~~~~-~~ai~Ea~~-l~IP~i~i~Dt~~~~~~i~ypIP~N-----~ds~~si~~~~~~l~~ai~~g~~ 225 (844)
..||+||+. +|..+ .-+...|.. ..-|+|.|+|.+ +|..+...|-+= =+......++ -.|.-|+.+...
T Consensus 49 ~~pDvVildie~p~rd~~e~~~~~~~~~~~piv~lt~~s-~p~~i~~a~~~Gv~ayivkpi~~~rl~-p~L~vA~srf~~ 126 (194)
T COG3707 49 LQPDVVILDIEMPRRDIIEALLLASENVARPIVALTAYS-DPALIEAAIEAGVMAYIVKPLDESRLL-PILDVAVSRFEE 126 (194)
T ss_pred cCCCEEEEecCCCCccHHHHHHHhhcCCCCCEEEEEccC-ChHHHHHHHHcCCeEEEecCcchhhhh-HHHHHHHHHHHH
Confidence 379999975 34444 222233333 477899997764 333322111110 0111222221 222233444444
Q ss_pred hhhhhccc---------CcchHHHHHHHHh-ccCCHHHHHHHHHHH
Q psy3759 226 VGELRSKT---------LAPIMECKKALIE-ANGKLSKAEEILRIK 261 (844)
Q Consensus 226 v~~lr~~t---------~~~~~~ck~aL~~-~~~d~~~A~~~Lr~k 261 (844)
...||.++ ..-+..+|-=|.. .+.+-++|..|||+.
T Consensus 127 ~~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 127 RRALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44444332 3344455555554 355889999999976
Done!