BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3760
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P06614|CYSB_SALTY HTH-type transcriptional regulator CysB OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=cysB PE=1 SV=1
Length = 324
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 129/301 (42%), Positives = 191/301 (63%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M L Q R++ E V N N++ A+ LYTSQPG+SK + LE+EL I IF R GK + +T
Sbjct: 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
GQ I+R ++ +++ +K + E + D G+L IATTHTQARYALP +IK F ++P
Sbjct: 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPGVIKGFIERYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V L + QG+P QI E + AD AI TE L D L+ +PCY W I+V DHPL
Sbjct: 121 RVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPDHPLAA 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+S++++ ++ YPL+TY F+GR +LD F+ LTP IV ++D+IKTYV L +G+
Sbjct: 181 TSSVTIEALAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D D +L I A +F + +++ ++ T+LRSY+Y FI+ +P L R +
Sbjct: 241 GVIASMAVDPLADPDLVRIDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV 300
Query: 301 N 301
+
Sbjct: 301 D 301
>sp|P45600|CYSB_KLEPN HTH-type transcriptional regulator CysB OS=Klebsiella pneumoniae
GN=cysB PE=1 SV=2
Length = 324
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 192/301 (63%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M L Q R++ E V N N++ A+ LYTSQPG+SK + LE+EL I IF R GK + +T
Sbjct: 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
GQ I+R ++ +++ +K + E + D G+L +ATTHTQARYALP +IK F ++P
Sbjct: 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYVATTHTQARYALPGVIKGFIERYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V L + QG+P QI E + AD AI TE L D L+ +PCY W I+V +HPL
Sbjct: 121 RVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPEHPLAT 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
S+S++E++ YPL+TY F+GR +LD F+ LTP IV ++D+IKTYV L +G+
Sbjct: 181 KGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D D +L + A+ +F + +++ ++ T+LRSY+Y FI+ +P L R +
Sbjct: 241 GVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV 300
Query: 301 N 301
+
Sbjct: 301 D 301
>sp|P0A9F3|CYSB_ECOLI HTH-type transcriptional regulator CysB OS=Escherichia coli (strain
K12) GN=cysB PE=3 SV=1
Length = 324
Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 191/301 (63%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M L Q R++ E V N N++ A+ LYTSQPG+SK + LE+EL I IF R GK + +T
Sbjct: 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
GQ I+R ++ +++ +K + E + D G+L IATTHTQARYALP +IK F ++P
Sbjct: 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V L + QG+P QI + + AD AI TE L + L+ +PCY W I+V DHPL
Sbjct: 121 RVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAG 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+I+++E++ YPL+TY F+GR +LD F+ LTP IV ++D+IKTYV L +G+
Sbjct: 181 KKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D D +L + A +F + +++ ++ T+LRSY+Y FI+ +P L R +
Sbjct: 241 GVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV 300
Query: 301 N 301
+
Sbjct: 301 D 301
>sp|P0A9F4|CYSB_ECOL6 HTH-type transcriptional regulator CysB OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=cysB PE=3 SV=1
Length = 324
Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 191/301 (63%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M L Q R++ E V N N++ A+ LYTSQPG+SK + LE+EL I IF R GK + +T
Sbjct: 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
GQ I+R ++ +++ +K + E + D G+L IATTHTQARYALP +IK F ++P
Sbjct: 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V L + QG+P QI + + AD AI TE L + L+ +PCY W I+V DHPL
Sbjct: 121 RVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAG 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+I+++E++ YPL+TY F+GR +LD F+ LTP IV ++D+IKTYV L +G+
Sbjct: 181 KKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D D +L + A +F + +++ ++ T+LRSY+Y FI+ +P L R +
Sbjct: 241 GVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV 300
Query: 301 N 301
+
Sbjct: 301 D 301
>sp|P0A9F5|CYSB_ECO57 HTH-type transcriptional regulator CysB OS=Escherichia coli O157:H7
GN=cysB PE=3 SV=1
Length = 324
Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 191/301 (63%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M L Q R++ E V N N++ A+ LYTSQPG+SK + LE+EL I IF R GK + +T
Sbjct: 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
GQ I+R ++ +++ +K + E + D G+L IATTHTQARYALP +IK F ++P
Sbjct: 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V L + QG+P QI + + AD AI TE L + L+ +PCY W I+V DHPL
Sbjct: 121 RVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAG 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+I+++E++ YPL+TY F+GR +LD F+ LTP IV ++D+IKTYV L +G+
Sbjct: 181 KKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G+IAS+A D D +L + A +F + +++ ++ T+LRSY+Y FI+ +P L R +
Sbjct: 241 GVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV 300
Query: 301 N 301
+
Sbjct: 301 D 301
>sp|Q47083|CBL_ECOLI HTH-type transcriptional regulator cbl OS=Escherichia coli (strain
K12) GN=cbl PE=1 SV=2
Length = 316
Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 202/302 (66%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
MN Q + +REA RQ++NLTE A L+TSQ GVS+ I ELE+EL I+IF+R GKR+ G+T
Sbjct: 1 MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+PG+A+L E I+ E ++++ F+ +G LTIATTHTQARY+LP++IK F FP
Sbjct: 61 EPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
+V+L L+QG P++I +++N +ADI I +E LS +L++ P ++W + ++VP DHPL
Sbjct: 121 EVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQ 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
++ ++L+ I+ +PLITY +GR ++D F+ + L IVL +SD+IKTYV L +GI
Sbjct: 181 ISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGI 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
G++A + ++NL + HLF + +K+G R+YV+ F++L + L+ + I
Sbjct: 241 GLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDI 300
Query: 301 NK 302
+
Sbjct: 301 KR 302
>sp|P45105|CYSB_HAEIN HTH-type transcriptional regulator CysB OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=cysB PE=3
SV=1
Length = 323
Score = 264 bits (675), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 194/302 (64%), Gaps = 1/302 (0%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M +HQ R++ E V QN N+TEAA ALYTSQPG+SK + LE+EL ++IF RHGK I+ +T
Sbjct: 1 MKMHQLRYIVEIVNQNLNVTEAANALYTSQPGISKQVRLLEDELGLEIFERHGKHIKSIT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ I+ ++ + +G++ + E++ + G L IATT+TQARY LP +I+ F+ ++P
Sbjct: 61 PAGKKIISIARELLVKAQGIRAVADEYTRPNHGVLRIATTNTQARYMLPSVIERFSKKYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V L + QG+P QI + + + + D+AI TE D L+ IPCY W +IV +HPL
Sbjct: 121 DVSLHIHQGSPTQIHDALMSGEVDLAITTEAPYLFDDLVQIPCYWWNRAVIVSPEHPLAK 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
+ ++++E+ YPL+TY F+G LD F+ + P IV ++D+IKTYV L +G+
Sbjct: 181 VKELTIEELGKYPLVTYTFGFTGVSDLDYAFNSAGILPNIVFTATDADVIKTYVRLGLGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLNRKFI 300
GI+AS+A + D +L I ASHLF +++ + K T+LR+Y+Y F++ SP L R +
Sbjct: 241 GIMASMAHTA-LDTDLVLIDASHLFRPSMTNIAFKHSTFLRNYMYDFMEYFSPHLTRSVV 299
Query: 301 NK 302
K
Sbjct: 300 EK 301
>sp|Q08598|CBL_ENTAE HTH-type transcriptional regulator cbl OS=Enterobacter aerogenes
GN=cbl PE=4 SV=1
Length = 316
Score = 248 bits (633), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 192/296 (64%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
MN Q + +REA RQ++NLTE A LYTSQ GVS+ I ELEEEL I+IFIR GKR+ G+T
Sbjct: 1 MNFQQLKIIREAARQDYNLTEVANMLYTSQSGVSRHIRELEEELGIEIFIRRGKRLLGMT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+PG+A+L E I+ E ++++ F+ +G LTIATTHTQARY+LP +IK F F
Sbjct: 61 EPGKALLSIAERILNEASNVRRLADLFTNDASGVLTIATTHTQARYSLPPVIKAFRELFS 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V++ L+QG P++I ++ N ADI I +E LS L + P ++W + ++VP DHPL
Sbjct: 121 DVRVELVQGTPQEIEALLHNGGADIGIASERLSNDPTLAAFPWFRWHHSLLVPKDHPLTQ 180
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
++ ++L+ I+ +PLITY +GR ++D F+ + L P IVL +SD+IKTYVEL +G+
Sbjct: 181 VSPLTLEAIARWPLITYRQGITGRSRIDEAFNRKGLMPDIVLSAQDSDVIKTYVELGLGV 240
Query: 241 GIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKLLSPKLN 296
G++A + D+ + HLF + +K+G R+YV+ FI+L + L+
Sbjct: 241 GLVAEQSGDAREADTFTRLDTRHLFDANTVWLGLKRGQLQRNYVWRFIELCNAGLS 296
>sp|Q55459|CMPR_SYNY3 HTH-type transcriptional activator CmpR OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=cmpR PE=1 SV=1
Length = 304
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 137/243 (56%), Gaps = 6/243 (2%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62
LHQF V A+ + + T+AA+ L+ +QP VS+ + +L + + + ++ + G++I LT+
Sbjct: 6 LHQFE-VFAAIARTGSFTKAAEELFLTQPTVSQQMKQLTKAIGVPLYEQIGRKIY-LTEA 63
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
GQA+L + + I ++ L+++ + GNL +AT T +Y +P+++ EF Q+P +
Sbjct: 64 GQAVLDASKNITSCLDQLQEVIADLQGLKKGNLRLATI-TTGKYFVPRLLGEFRQQYPGI 122
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCY-QWEYVIIVPLDHPLLLL 181
+SL GN +QI E + N+ D+ + + PS+ I+I + + V+I HPL+
Sbjct: 123 SISLQIGNRQQILERLANNLDDLYFLGK--PPSNLDINIRHFLENPLVVIASRQHPLVKE 180
Query: 182 NSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIG 241
ISL+ + N PLI + R+ ++ FS +L + +E +++ IK V +GI
Sbjct: 181 KKISLERLVNEPLIMRESGSGTRMAVEEFFSENRLKMNVEMEISSNEAIKQAVYGGLGIS 240
Query: 242 IIA 244
I++
Sbjct: 241 ILS 243
>sp|P37499|YYBE_BACSU Uncharacterized HTH-type transcriptional regulator YybE OS=Bacillus
subtilis (strain 168) GN=yybE PE=4 SV=2
Length = 292
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 6/259 (2%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M Q + + R ++T+AAK+L +QP +S++I LE L + +F R G+ I L
Sbjct: 1 MEWEQLEYFQTLARMQ-HVTKAAKSLSITQPALSRSIARLENHLGVPLFDRQGRSI-SLN 58
Query: 61 KPGQAILRSIEIIMQE-IEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
+ G LR ++ +M+E EG ++I + D G +++ HT +P +I F ++
Sbjct: 59 QYGHIFLRRVQAMMKEYTEGKEEI-QALLKPDQGVVSLGFLHTLGTTLVPDLIGSFQQEY 117
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
P + L Q + + E +++ D+ ++ I P + + I + E + VP DHPL
Sbjct: 118 PNISFQLKQNHSYWLLERLKSGDLDLCLLASI-KPENPIQWIKLWSEELFVFVPNDHPLA 176
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
SI+L EI+ I ++ R+ +D F + P I+ E + +V +G
Sbjct: 177 SRESITLNEIAGERFILLKKGYALRMTVDELFEKANIQPNIMFEGEEATTAAGFVAAGLG 236
Query: 240 IGIIASI-AFDSNRDKNLR 257
I I+ + D ++ +R
Sbjct: 237 ISILPDLKGLDQSKITKIR 255
>sp|O32255|YVBU_BACSU Uncharacterized HTH-type transcriptional regulator YvbU OS=Bacillus
subtilis (strain 168) GN=yvbU PE=4 SV=1
Length = 292
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 10/250 (4%)
Query: 1 MNLHQFR-FVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGL 59
M + Q + FV+ A +F T+A +AL +QP VS AI +E EL + + IR + L
Sbjct: 1 MTITQLKVFVKIAETGSF--TKAGQALNMTQPAVSHAISAIEAELDVKLIIRDRRNGLML 58
Query: 60 TKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
T G+ IL I +++ IE ++++ + G + I T T + Y +PK+I EF ++
Sbjct: 59 TDTGKQILVHIREVLKGIEKVEQVAAAEKGLELGTIHIGTFSTASAYFMPKLISEFKQKY 118
Query: 120 PKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
PK++L L +G ++ E + D+ I +L P++++ I + + +++ DHPL
Sbjct: 119 PKLELVLHEGTVNEVKEWLHTRMIDVGI---LLYPTEEMEYIHLKKDKMAVVLRDDHPLA 175
Query: 180 LLNSISLKEISNYPLITYDLSF-SGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRM 238
++I+LK++ + P+I D + S I + R+ L P + IN+ I + + +
Sbjct: 176 SHSAITLKDLDHEPMIVCDGGYESPFIDMFRQAG-ATLHPAFTVYNINTSI--SMIREGL 232
Query: 239 GIGIIASIAF 248
G+ I++ ++
Sbjct: 233 GLAILSEMSM 242
>sp|P27111|CYNR_ECOLI HTH-type transcriptional regulator CynR OS=Escherichia coli (strain
K12) GN=cynR PE=1 SV=5
Length = 299
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 10/252 (3%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIE 71
AV ++ + T AA AL+ SQP +S+ I +LEE L + +F R G+ IR LT G+ +
Sbjct: 11 AVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIR-LTDAGEVWRQYAS 69
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP 131
+QE+ K+ + + G+L IA T T Y + ++ +F ++P + L L + +
Sbjct: 70 RALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQ 129
Query: 132 KQITEMIRNDQADIAIV-TEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS 190
++I +M+ D+ D+ I + SP +L +IP ++V HPL + ++L +
Sbjct: 130 EKIEDMLCRDELDVGIAFAPVHSP--ELEAIPLLTESLALVVAQHHPLAVHEQVALSRLH 187
Query: 191 NYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL--RMGIGIIASIAF 248
+ L+ F+ R ++D L P +V+E ++ I +EL R + + A
Sbjct: 188 DEKLVLLSAEFATREQIDHYCEKAGLHPQVVIE---ANSISAVLELIRRTSLSTLLPAAI 244
Query: 249 DSNRDKNLRSIS 260
+ D L++IS
Sbjct: 245 ATQHD-GLKAIS 255
>sp|P52675|CYSB_THIRO HTH-type transcriptional regulator CysB (Fragment) OS=Thiocapsa
roseopersicina GN=cysB PE=3 SV=1
Length = 136
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 80/136 (58%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M++ Q R + V F+++ AA+ L+ Q V++ + +LE EL +F+RHGKR+ GLT
Sbjct: 1 MDVRQLRSLVTLVEVRFSVSRAAECLHLVQSAVTQHLKQLEAELGTRLFVRHGKRLVGLT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ +LR +++ + +G+E + + + THTQARY LP +I+ F +P
Sbjct: 61 EVGEQVLRHACEALRQTGNIVAVGREHLEEERRRIRLGATHTQARYVLPPVIRRFAAAYP 120
Query: 121 KVKLSLLQGNPKQITE 136
V+L + QG P Q+ +
Sbjct: 121 AVELQIHQGTPGQLVD 136
>sp|P20668|GLTC_BACSU HTH-type transcriptional regulator GltC OS=Bacillus subtilis
(strain 168) GN=gltC PE=1 SV=3
Length = 300
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 2/248 (0%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M L Q R+ E V + +++EAA L+ +Q +S+ I LEEEL++ +F R G+ I+ LT
Sbjct: 1 MELRQLRYFME-VAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFEREGRNIK-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ L ++ M+ I+ K+ E+ G + I + A LP +I F ++P
Sbjct: 59 PIGKEFLIHVKTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEEYP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V+ L QG+ K + E +RN D+A++ + + + + + +VPL+HPL
Sbjct: 119 HVEFLLRQGSYKFLIEAVRNRDIDLALLGPVPTNFSDITGKILFTEKIYALVPLNHPLAK 178
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
++ L ++ N + + F R P + E + D IK V MG+
Sbjct: 179 QKTVHLIDLRNDQFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGEDLDAIKGLVSAGMGV 238
Query: 241 GIIASIAF 248
++ F
Sbjct: 239 TLLPESTF 246
>sp|Q8X4M5|CYNR_ECO57 HTH-type transcriptional regulator CynR OS=Escherichia coli O157:H7
GN=cynR PE=3 SV=1
Length = 299
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 107/215 (49%), Gaps = 6/215 (2%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIE 71
AV ++ + T AA AL+ SQP +S+ I +LEE L + +F R G+ I LT G+ +
Sbjct: 11 AVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIH-LTDAGEVWRQYAS 69
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP 131
+QE+ K+ + + G+L IA T T Y + ++ +F ++P + L L + +
Sbjct: 70 RALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPGITLQLQEMSQ 129
Query: 132 KQITEMIRNDQADIAIVTEILSPSD--KLISIPCYQWEYVIIVPLDHPLLLLNSISLKEI 189
++I +++ D+ D+ I +P +L +IP ++V HPL ++L +
Sbjct: 130 EKIEDLLCRDELDVGIA---FAPVHLPELEAIPLLTESLALVVAQHHPLAACEQVALSRL 186
Query: 190 SNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLET 224
+ L+ F+ R ++D L P +V+E
Sbjct: 187 HDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEA 221
>sp|Q8YQ82|RBCR_NOSS1 Probable RuBisCO transcriptional regulator OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=rbcR PE=3 SV=1
Length = 337
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 135/285 (47%), Gaps = 16/285 (5%)
Query: 2 NLHQFRFVRE-AVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
L Q R ++ AV +F AA +LY SQP VS + LE +L + +F R G+R + LT
Sbjct: 7 TLDQLRILKAIAVEGSFK--RAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQ-LT 63
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G +L E I+ + + ++ G L + + T Y LPK+I F ++P
Sbjct: 64 EAGHLLLSYGEKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYP 123
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIV-TEILSP-SDKLISIPCYQWEYVIIVPLDHPL 178
V + L + ++ + N Q D+AI+ EI ++ L IP + E +I+P+ HP
Sbjct: 124 DVAVQLHVHSTRRTAWSVANGQVDLAIIGGEIPGELTESLEIIPYAEDELALILPVFHPF 183
Query: 179 LLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY---IVLETINSDIIKTYVE 235
L++I +++ IT D + R +D+ S ++ I +E + + IK V+
Sbjct: 184 TKLDTIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKNAVQ 243
Query: 236 LRMGIGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYL 280
+G +++ A + + L T I V+IK+ +L
Sbjct: 244 SGLGAAFVSTSAI-------AKELQMGVLHCTPIDGVVIKRTLWL 281
>sp|P73123|RBCR_SYNY3 Probable RuBisCO transcriptional regulator OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=rbcR PE=3 SV=1
Length = 345
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62
L Q R ++ A+ + AA LY SQP VS + LE++LS+ +F R G++ + LT+
Sbjct: 8 LDQLRILK-AIASEGSFKRAADTLYVSQPAVSLQVQNLEKQLSVPLFDRGGRKAQ-LTEA 65
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G +L E I+ + + ++ G L + + T Y LP++I F Q+P V
Sbjct: 66 GHLLLNYGEKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQQYPDV 125
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIV-TEILSP-SDKLISIPCYQWEYVIIVPLDHPLLL 180
+ L + ++ + N Q D+AI+ E+ + + L +P + E +I+P+ HPL
Sbjct: 126 TVQLQVHSTRRTAWGVANGQVDLAIIGGEVPAELQETLTVLPYAEDELALILPVLHPLAQ 185
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDR-----EFSLQKLTPYIVLETINSDIIKTYVE 235
+I +++ I+ D + R +D+ E ++L + L +I + IK V+
Sbjct: 186 AETIQKEDLYKLKFISLDSQSTIRKVIDKVLSQGEIDTKRLKIEMELNSIEA--IKNAVQ 243
Query: 236 LRMGIGIIASIAFDSNRDKNLRSISASHLFGTTISR---VIIKQGTYLRSYVYSFIKLLS 292
+G +++ A + + N+ I+ + I R VII Y +FI+ +
Sbjct: 244 SGLGAAFVSTTAIEKELEMNVLHIAP--IKNVEIRRVLSVIINPNRYRSKASAAFIREVL 301
Query: 293 PKLN 296
P+ +
Sbjct: 302 PQFS 305
>sp|P48271|RBCR_CYAPA Probable RuBisCO transcriptional regulator OS=Cyanophora paradoxa
GN=rbcR PE=3 SV=1
Length = 324
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 126/238 (52%), Gaps = 15/238 (6%)
Query: 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61
+L Q R ++ A+ + +AA++LY +QP +S I LE++L+I +F R G+R +T+
Sbjct: 9 SLEQLRILK-AIATEGSFKKAAESLYMTQPAISLQIQTLEKKLNIALFDRSGRRAL-MTE 66
Query: 62 PGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPK 121
G +LR + I+ E ++ G L I + T Y +P++I F ++P+
Sbjct: 67 AGHLLLRYGDCILALCEETCHALEDLRNLQGGTLVIGASQTTGTYLMPRLIGLFRQRYPQ 126
Query: 122 VKLSLLQGNPKQITEMIRNDQADIAIV-TEILSPSDKLISI-PCYQWEYVIIVPLDHPLL 179
V + L + ++I+ I N Q D+A++ E+ + ++I P + E V+I+P HP
Sbjct: 127 VTVKLHVHSTRRISWNIANGQVDLAVIGGEVPHELQESLTITPYAEDELVLILPKSHPFA 186
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLET-INSDIIKTYVEL 236
L SI +++ Y L F I LD + +++K+ ++ + I+S++ + +EL
Sbjct: 187 KLESIQKEDL-------YRLKF---IALDAQSAIRKVIDKVLAQNGIDSNLFRVEMEL 234
>sp|P39592|YWBI_BACSU Uncharacterized HTH-type transcriptional regulator YwbI OS=Bacillus
subtilis (strain 168) GN=ywbI PE=4 SV=1
Length = 301
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 3/243 (1%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M++ + E R + T+A+++LY SQP +SK I LEEEL I++F R+G+++ LT
Sbjct: 1 MDIRHLTYFLEVARLK-SFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNGRQVE-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G ++ + I++ + L + G++ I P+++ +F +P
Sbjct: 59 DAGHSMYVQAQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRENYP 118
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V L++ ++ E + + DI +V + + D S + +++V H L
Sbjct: 119 NVTFQLVEDGSIKVQEGVGDGSLDIGVVV-LPANEDIFHSFTIVKETLMLVVHPSHRLAD 177
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
L+E+ + P I + F ++ E P+I+ ET D I V +GI
Sbjct: 178 EKECQLRELKDEPFIFFREDFVLHNRIMTECIKAGFRPHIIYETSQWDFISEMVSANLGI 237
Query: 241 GII 243
G++
Sbjct: 238 GLL 240
>sp|Q3MCB5|RBCR_ANAVT Probable RuBisCO transcriptional regulator OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=rbcR PE=3 SV=1
Length = 337
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 133/284 (46%), Gaps = 16/284 (5%)
Query: 3 LHQFRFVRE-AVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61
L Q R ++ AV +F AA +LY SQP VS + LE +L + +F R G+R + LT+
Sbjct: 8 LDQLRILKAIAVEGSFK--RAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQ-LTE 64
Query: 62 PGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPK 121
G +L E I+ + + ++ G L + + T Y LPK+I F ++P
Sbjct: 65 AGHLLLNYGEKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYPD 124
Query: 122 VKLSLLQGNPKQITEMIRNDQADIAIV-TEILSP-SDKLISIPCYQWEYVIIVPLDHPLL 179
V + L + ++ + N Q D+AI+ EI ++ L IP + E +I+P+ HP
Sbjct: 125 VAVQLHVHSTRRTAWSVANGQVDLAIIGGEIPGELTESLEIIPYAEDELALILPVFHPFT 184
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY---IVLETINSDIIKTYVEL 236
+I +++ IT D + R +D+ S ++ I +E + + IK V+
Sbjct: 185 KQETIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKNAVQS 244
Query: 237 RMGIGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYL 280
+G +++ A + + L T I V+IK+ +L
Sbjct: 245 GLGAAFVSTSAI-------AKELQMGVLHCTPIDGVVIKRTLWL 281
>sp|Q5N5I5|CMPR_SYNP6 HTH-type transcriptional activator CmpR OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cmpR
PE=3 SV=1
Length = 323
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 123/245 (50%), Gaps = 6/245 (2%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
+ LHQ + A R + + T AA+ LY +QP VS + +L + + + +F + GKR+ LT
Sbjct: 4 LTLHQLKVFEAAARHS-SFTRAAEELYLTQPTVSIQVKQLTKAVGLPLFEQIGKRLY-LT 61
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ + ++ + +++E L + G L +A T A+Y +P++I F ++P
Sbjct: 62 EAGRQLYKTTRQVFEQLEQLDMTIADLQGMKQGQLRLAVI-TTAKYFIPRLIGPFCQRYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISI-PCYQWEYVIIVPLDHPLL 179
+ +SL N + + I ++ D+ +++ PS I++ P V++ P HPL
Sbjct: 121 GINVSLKVTNHEGLINRINDNLDDLYVLSR--PPSGFDITVQPFLDNPLVVVGPASHPLA 178
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
ISL+ ++ P I + R ++ F+ L + L+ +++ IK + +G
Sbjct: 179 NQRGISLERLAQEPFILRERGSGTREATEQLFAAHNLNLNVKLDLGSNEAIKQAILGGLG 238
Query: 240 IGIIA 244
+ +++
Sbjct: 239 LAVLS 243
>sp|Q9F1R2|CMPR_SYNE7 HTH-type transcriptional activator CmpR OS=Synechococcus elongatus
(strain PCC 7942) GN=cmpR PE=1 SV=1
Length = 323
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 123/245 (50%), Gaps = 6/245 (2%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
+ LHQ + A R + + T AA+ LY +QP VS + +L + + + +F + GKR+ LT
Sbjct: 4 LTLHQLKVFEAAARHS-SFTRAAEELYLTQPTVSIQVKQLTKAVGLPLFEQIGKRLY-LT 61
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ + ++ + +++E L + G L +A T A+Y +P++I F ++P
Sbjct: 62 EAGRQLYKTTRQVFEQLEQLDMTIADLQGMKQGQLRLAVI-TTAKYFIPRLIGPFCQRYP 120
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISI-PCYQWEYVIIVPLDHPLL 179
+ +SL N + + I ++ D+ +++ PS I++ P V++ P HPL
Sbjct: 121 GINVSLKVTNHEGLINRINDNLDDLYVLSR--PPSGFDITVQPFLDNPLVVVGPASHPLA 178
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
ISL+ ++ P I + R ++ F+ L + L+ +++ IK + +G
Sbjct: 179 NQRGISLERLAQEPFILRERGSGTREATEQLFAAHNLNLNVKLDLGSNEAIKQAILGGLG 238
Query: 240 IGIIA 244
+ +++
Sbjct: 239 LAVLS 243
>sp|Q4G384|RBCR_EMIHU Probable RuBisCO transcriptional regulator OS=Emiliania huxleyi
GN=rbcR PE=3 SV=1
Length = 314
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 4/198 (2%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62
L Q + ++ R+ + AAK LY SQP VS+ + LE +L+ IF R ++ R LT+
Sbjct: 8 LDQLKIIKTIHREG-SFKTAAKKLYISQPAVSRQVQNLERQLNTPIFYRDKRKAR-LTET 65
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G +++ E I+ E + E + ++G L I + T Y +P++I F ++P++
Sbjct: 66 GHILVKYAEQILSLCEETCQALDELKSINSGTLVIGASQTTGTYLMPRLIGIFRHKYPQI 125
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIVTEILSPS--DKLISIPCYQWEYVIIVPLDHPLLL 180
+ L + ++I+ + N + D+AIV + P L I + E +I+P HP
Sbjct: 126 SIELKVHSTRRISWGVANGEIDLAIVGGEVPPELQGTLEIISYAEDELALIIPQAHPFAT 185
Query: 181 LNSISLKEISNYPLITYD 198
L SI +++ I D
Sbjct: 186 LQSIQKEDLYRLRFIALD 203
>sp|P96725|YWQM_BACSU Uncharacterized HTH-type transcriptional regulator YwqM OS=Bacillus
subtilis (strain 168) GN=ywqM PE=4 SV=2
Length = 293
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 131/299 (43%), Gaps = 21/299 (7%)
Query: 1 MNLHQF-RFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGL 59
M L Q F+ A NF LT AK L +Q V+ I LEEE+ +F R GKR+ L
Sbjct: 1 MELKQLITFITAAEHVNFTLT--AKMLNYAQSSVTSQIKSLEEEIGTPLFERLGKRLI-L 57
Query: 60 TKPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQF 119
T+ G+ + I+ E K + TG L I T +Q Y LP IIKEF F
Sbjct: 58 TEAGKTFKSYAQKIIALTEEAKMATNQVRET-TGTLKIGATESQCTYRLPPIIKEFKQAF 116
Query: 120 PKVKLSLLQGNP----KQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLD 175
P+VKL P +Q E + Q DI + ++ D L Q E ++ D
Sbjct: 117 PQVKLIF---KPYISNEQAKEQLLQGQLDITFILDVNRMEDALHVESLIQDEIKMVAAND 173
Query: 176 HPLLLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVE 235
HP ++LK++ N L+ + S R + + P LE ++ + IK V
Sbjct: 174 HPFPADLPVTLKDLQNETLLLTEDGCSYRTLFENNLHDSGIYPN-KLEFVSIEAIKQCVM 232
Query: 236 LRMGIGIIASIAFDSN----RDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKL 290
+GIGI+ + + R K L S +F +++ + ++ + + +FI L
Sbjct: 233 AGLGIGILPEMTVKDDIAAGRMKELNWQSDCPVF----TQLAWHKDKWMSAPLKAFIDL 287
>sp|Q47141|HCAR_ECOLI Hca operon transcriptional activator OS=Escherichia coli (strain
K12) GN=hcaR PE=1 SV=2
Length = 296
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 118/245 (48%), Gaps = 10/245 (4%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M L R+ AV Q N T AA+ L+TSQP +S I +LE + + + +R +++ LT
Sbjct: 1 MELRHLRYFV-AVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKV-ALT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G+ L+ I+++ E K ++ D LTI + LPK++ F ++ P
Sbjct: 59 AAGECFLQDALAILEQAENAKLRARKIVQEDR-QLTIGFVPSAEVNLLPKVLPMFRLRQP 117
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTE-ILSPSDKLISIPCYQWEYVIIVPLDHPLL 179
+ L+ Q E IR + D+ ++ + SP + + + V+++P+DHPL
Sbjct: 118 DTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLEL--FDEPLVVVLPVDHPLA 175
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIK--LDREFSLQKLTPYIVLETINSDIIKTYVELR 237
I+ ++ ++ D +SG + + F+ + P IV + ++I+ T +
Sbjct: 176 HEKEITAAQLDGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNIV--QVATNILVTMNLVG 233
Query: 238 MGIGI 242
MG+G+
Sbjct: 234 MGLGV 238
>sp|P25544|RBCR_CHRVI RuBisCO operon transcriptional regulator OS=Chromatium vinosum
GN=rbcR PE=4 SV=1
Length = 302
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 122/245 (49%), Gaps = 6/245 (2%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
++L Q R V EAV ++ + T AA+ L+ SQP VS + +LE+E+ + +F R GK++ LT
Sbjct: 3 VSLRQLR-VFEAVARHNSYTRAAEELHLSQPAVSMQVRQLEDEIGLSLFERLGKQV-VLT 60
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
+ G+ + I Q + ++++ + G+L IA T Y P+++ F +
Sbjct: 61 EAGREVFHYSRAIGQSLREMEEVLESLKGVSRGSLRIAVAST-VNYFAPRLMAIFQQRHS 119
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWE-YVIIVPLDHPLL 179
+ L L N + + +M+ ++ D+ ++ + P + + + V+I P DHPL
Sbjct: 120 GIGLRLDVTNRESLVQMLDSNSVDLVLMG--VPPRNVEVEAEAFMDNPLVVIAPPDHPLA 177
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
+ISL ++ + + R ++R FS + T ++ ++ +K V +G
Sbjct: 178 GERAISLARLAEETFVMREEGSGTRQAMERFFSERGQTIRHGMQMTRNEAVKQAVRSGLG 237
Query: 240 IGIIA 244
+ +++
Sbjct: 238 LSVVS 242
>sp|O19892|RBCR_CYACA Probable RuBisCO transcriptional regulator OS=Cyanidium caldarium
GN=rbcR PE=3 SV=1
Length = 317
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 122/237 (51%), Gaps = 15/237 (6%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62
L Q R +R + Q + +AA +LY SQP VS + +E++L+I +F R + + LT+
Sbjct: 8 LDQLRILRAILIQG-SFKKAATSLYISQPAVSSHVHNIEKQLNIQLFDRSHRNAQ-LTEA 65
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
GQ +L+ I+ E + ++ GNL I + T Y +PK+I F ++P++
Sbjct: 66 GQLLLKYGGRILALCEETCRALEDLQNLQCGNLIIGASQTTGTYLMPKLIGLFRQKYPQI 125
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIV-TEILSPSDKLISIPCY-QWEYVIIVPLDHPLLL 180
+ L + ++I+ + N Q D+AI+ E+ +++ + + + E +I+P HP
Sbjct: 126 SVQLQVHSTRRISWSVANGQLDLAIIGGEVPKELTEILEVRNFVEDELTLILPPSHPFSK 185
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIV-LETINSDIIKTYVEL 236
+ I +++ Y L F I LD+ +++K+ I+ I+S +KT +EL
Sbjct: 186 FSCIQKEDL-------YRLRF---IALDKNSTIRKVIDKILNRNGIDSSRLKTEMEL 232
>sp|P39647|CYSL_BACSU HTH-type transcriptional regulator CysL OS=Bacillus subtilis
(strain 168) GN=cysL PE=1 SV=1
Length = 299
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 126/277 (45%), Gaps = 16/277 (5%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAIL--RS 69
AV + N T+AA+ L SQP VS I LE+E + R K T P IL R+
Sbjct: 11 AVVEEKNFTKAAEKLMISQPSVSLHIKNLEKEFQTALLNRSPKHFT--TTPTGDILYQRA 68
Query: 70 IEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG 129
+++ + +I Y G L IA + T Y LP ++ + +P++ L ++ G
Sbjct: 69 KQMVFLYEQAKAEIYAHHH-YVKGELKIAASFTIGEYILPPLLAQLQKLYPELNLDVMIG 127
Query: 130 NPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEI 189
N ++++E +R QADI ++ E + ++L P + E I P HPL IS+ ++
Sbjct: 128 NTEEVSERVRMLQADIGLI-EGHTNENELEIEPFMEDEMCIAAPNQHPLAGRKEISISDL 186
Query: 190 SNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFD 249
N +T + R LD S L P + ++ +K V MG+ +++
Sbjct: 187 QNEAWVTREKGSGTREYLDHVLSSNGLRPKSMFTISSNQGVKEAVINGMGLSVLSRSVL- 245
Query: 250 SNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYS 286
+D R IS H+ ++ R + SY++S
Sbjct: 246 -RKDLIHREISILHINNFSLKRKL--------SYIHS 273
>sp|A2CI69|RBCR_CHLAT Probable RuBisCO transcriptional regulator OS=Chlorokybus
atmophyticus GN=rbcR PE=3 SV=1
Length = 313
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 6/245 (2%)
Query: 8 FVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAIL 67
+ +A+ + +AA +LY SQP VS + +E++L++ + R G+R LT G +L
Sbjct: 12 LILKAIAAQGSFKKAADSLYISQPAVSMQVQNIEKQLNVQLLDRGGRRA-NLTDAGHLLL 70
Query: 68 RSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLL 127
R + I+ + + ++ TG L I + T Y +P++I F ++P++ + L
Sbjct: 71 RYGDRILALCDETCRALEDLRNLQTGTLIIGASQTTGTYLMPQLISLFRKKYPQIMVQLH 130
Query: 128 QGNPKQITEMIRNDQADIAIV-TEI-LSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSIS 185
+ + I + N Q DIAI+ E+ L + L P E +I+P HP I
Sbjct: 131 VDSTRHICWNVANGQIDIAIIGGEVPLELREILQVTPYADDELALILPCSHPFSQRQEIQ 190
Query: 186 LKEISNYPLITYDLSFSGRIKLD---REFSLQKLTPYIVLETINSDIIKTYVELRMGIGI 242
+++ I S + R +D RE + +I +E + + IK+ V+ +G
Sbjct: 191 KEDLYQLHFIALYASSTIRKVVDNILREHDIHSSRFFIEMELNSIEAIKSAVQSELGAAF 250
Query: 243 IASIA 247
+++ A
Sbjct: 251 VSASA 255
>sp|A0T0G2|RBCR_PHATC Probable RuBisCO transcriptional regulator OS=Phaeodactylum
tricornutum (strain CCAP 1055/1) GN=rbcR PE=3 SV=1
Length = 307
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 144/306 (47%), Gaps = 39/306 (12%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62
L Q R ++ AV N T+AA+ LY SQP +SK I LE+ L I + R +I LT+
Sbjct: 6 LQQLRILK-AVATEKNFTKAAELLYLSQPSLSKQIKTLEKNLDILLVNRENNKI-SLTEN 63
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G+ L+ E I+ E + + + G+LT+ + T Y +P+++ F +P++
Sbjct: 64 GKIFLQYSERILALCEESCRALIDLKNGERGSLTVGASQTIGTYLMPRVLALFAQNYPQI 123
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIV-TEILSPSDKLISIPCY-QWEYVIIVPLDHPLLL 180
L + + + + + I N + DIA+V EI K +++ + + E+ +I+P HP
Sbjct: 124 DLKVQVNSTRIVAKNILNREIDIAVVGGEIPLDLKKNLTVEKFVEDEFSLIIPKSHPF-- 181
Query: 181 LNSISLKEISNYPLIT----YDLSFSGRIKLDREFSLQKLTPYIVLET------------ 224
+N ++T Y L+F I L+ +++K I+++
Sbjct: 182 ---------ANKKIVTKEDLYHLNF---ISLNSNSTIRKFIDNILIQNQIDTKQLKIIMQ 229
Query: 225 INS-DIIKTYVELRMGIGIIASIAFDSNRDKNLRSISASHLFGTTISRV--IIKQGTYLR 281
+NS + IKT V L G ++S A + ++ L++I + I+R II +
Sbjct: 230 LNSIEAIKTAVSLGQGAAFVSSAAIE--KEIELKTIEILKIENIRITRTLSIISNSESYK 287
Query: 282 SYVYSF 287
S + F
Sbjct: 288 SKAFEF 293
>sp|Q1XDT2|RBCR_PORYE Probable RuBisCO transcriptional regulator OS=Porphyra yezoensis
GN=rbcR PE=3 SV=1
Length = 317
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 7/247 (2%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62
L Q R ++ A+ + + +AA +LY SQP +S I LE +L++ +F R K+ LT+
Sbjct: 8 LDQLRILK-AIAKEGSFKKAANSLYVSQPAISLQIQNLERQLNVSLFERGNKKAT-LTEA 65
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G +LR I+ E + + G L I + T Y +P++I F ++P+V
Sbjct: 66 GSLLLRYGGRILALCEETCRALDDLQNLQGGTLIIGASQTTGTYLMPRLIGLFRQRYPQV 125
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIV-TEILSPSDKLISIPCY-QWEYVIIVPLDHPLLL 180
+ L + + I+ + N Q D+AI+ E+ + ++ + Y + E +I+P HP
Sbjct: 126 AVQLQVHSTRLISWSVANGQVDLAIIGGEVPTELQDVLQVTSYAEDELALILPKSHPFSK 185
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY---IVLETINSDIIKTYVELR 237
L I +++ I D + R +D+ S + I +E + + IK V+
Sbjct: 186 LGDIQKEDLYRLRFIALDTQSTIRKVIDKVLSQHGIDSSRFKIEMELNSIEAIKNAVQSG 245
Query: 238 MGIGIIA 244
+G ++
Sbjct: 246 LGAAFVS 252
>sp|P51205|RBCR_PORPU Probable RuBisCO transcriptional regulator OS=Porphyra purpurea
GN=rbcR PE=3 SV=1
Length = 317
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 7/247 (2%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62
L Q R ++ A+ + + +AA +LY SQP +S I LE +L++ +F R K+ LT+
Sbjct: 8 LDQLRILK-AIAKEGSFKKAANSLYVSQPAISLQIQNLERQLNVALFERGNKKAT-LTEA 65
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G +LR I+ E + + G L I + T Y +P++I F ++P+V
Sbjct: 66 GSLLLRYGGRILALCEETCRALDDLQNLQGGTLIIGASQTTGTYLMPRLIGLFRQRYPQV 125
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIV-TEILSPSDKLISIPCY-QWEYVIIVPLDHPLLL 180
+ L + + I+ + N Q D+AI+ E+ + ++ + Y + E +I+P HP
Sbjct: 126 AVQLQVHSTRLISWSVANGQVDLAIIGGEVPTELQDVLQVTSYAEDELALILPKSHPFSK 185
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY---IVLETINSDIIKTYVELR 237
L I +++ I D + R +D+ S + I +E + + IK V+
Sbjct: 186 LGDIQKEDLYRLRFIALDTQSTIRKVIDKVLSQHGIDSSRFKIEMELNSIEAIKNAVQSG 245
Query: 238 MGIGIIA 244
+G ++
Sbjct: 246 LGAAFVS 252
>sp|P03030|LYSR_ECOLI Transcriptional activator protein LysR OS=Escherichia coli (strain
K12) GN=lysR PE=4 SV=1
Length = 311
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 117/240 (48%), Gaps = 16/240 (6%)
Query: 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSI 70
AV +LTEAA L+TSQP VS+ + E+ + + +F +R+RG P LR
Sbjct: 13 HAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKLF----ERVRGRLHPTVQGLRLF 68
Query: 71 EIIMQEIEGLKKI---GKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLL 127
E + + GL +I + + G L+IA ++ LP++++ F ++P V L+++
Sbjct: 69 EEVQRSWYGLDRIVSAAESLREFRQGELSIACLPVFSQSFLPQLLQPFLARYPDVSLNIV 128
Query: 128 QGNPKQITEMIRNDQADIAIVTEILSPSD----KLISIPCYQWEYVIIVPLDHPLLLLNS 183
+ E + + D+ + + +P+ +L+S+ + V ++P HPL +
Sbjct: 129 PQESPLLEEWLSAQRHDLGLTETLHTPAGTERTELLSL-----DEVCVLPPGHPLAVKKV 183
Query: 184 ISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGII 243
++ + I+ + S R LD+ F+ ++ +++ET ++ + V +GI ++
Sbjct: 184 LTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKRRMIVETHSAASVCAMVRAGVGISVV 243
>sp|Q6B936|RBCR_GRATL Probable RuBisCO transcriptional regulator OS=Gracilaria
tenuistipitata var. liui GN=rbcR PE=3 SV=1
Length = 309
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 126/263 (47%), Gaps = 19/263 (7%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62
L Q R ++ V++ + AA +LY SQP +S I LE++L+I +F R K+ LT+
Sbjct: 8 LDQLRILKAIVKEG-SFKRAADSLYVSQPAISLQIQNLEKQLNIPLFERSNKKAT-LTEA 65
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G +LR I+ E + ++ GNL I + T Y +P++I F ++P+V
Sbjct: 66 GNLLLRYGGRILALCEETCRALEDVQNLQGGNLVIGASQTTGTYLMPRLIGLFRQRYPQV 125
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIV-TEILSPSDKLISIPCY-QWEYVIIVPLDHPLLL 180
+ L + + I+ + N Q D+A++ E+ + + + Y + E +I+P H
Sbjct: 126 NVQLQVHSTRLISWSVANGQVDLAVIGGEVPNELKDTLQVTSYAEDELALILPTSHVFSK 185
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
L I +++ Y L F I LD + +++K+ I+ I DI + ++ M +
Sbjct: 186 LPDIQKEDL-------YRLRF---IALDTQSTIRKVIDKIL---IQHDIDSSRFKIEMEL 232
Query: 241 GIIASI--AFDSNRDKNLRSISA 261
I +I A S S+SA
Sbjct: 233 NSIEAIKNAVQSGLGAAFVSVSA 255
>sp|P42722|CFXR_CUPNH HTH-type transcriptional regulator CfxR OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cfxR PE=4 SV=1
Length = 317
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 116/237 (48%), Gaps = 13/237 (5%)
Query: 13 VRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRG---LTKPGQAILRS 69
V ++ + AA+ L+ +QP VS + +LE + + +F +R++G LT+PG +L
Sbjct: 19 VARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALF----ERVKGQLTLTEPGDRLLHH 74
Query: 70 IEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQG 129
I+ E++ ++ + + G++TI T ++Y PK++ FT P V L + +G
Sbjct: 75 ASRILGEVKDAEEGLQAVKDVEQGSITIGLIST-SKYFAPKLLAGFTALHPGVDLRIAEG 133
Query: 130 NPKQITEMIRNDQADIAIVTEILSPSDKL--ISIPCYQWEYVIIVPLDHPLLLLNSISLK 187
N + + +++++ D+A++ P +L +S P +V++ HPL L+
Sbjct: 134 NRETLLRLLQDNAIDLALMGR---PPRELDAVSEPIAAHPHVLVASPRHPLHDAKGFDLQ 190
Query: 188 EISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIA 244
E+ + + + R + F TP V+ +++ IK V MGI +++
Sbjct: 191 ELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAGMGISLLS 247
>sp|Q85G62|RBCR_CYAME Probable RuBisCO transcriptional regulator OS=Cyanidioschyzon
merolae GN=rbcR PE=3 SV=1
Length = 303
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 120/239 (50%), Gaps = 17/239 (7%)
Query: 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61
L Q R + V + + +AA++LY SQP VS I LE++L+ +F R ++ + LT+
Sbjct: 7 TLDQLRIFQAIVVEG-SFQKAAQSLYISQPAVSLQIQNLEQQLNAPLFDRSHRKAK-LTE 64
Query: 62 PGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPK 121
GQ + I+ E + ++ G+L I + T Y +P +I F ++P
Sbjct: 65 AGQVFFKYASRILALCEETCRALEDLHHLQAGSLIIGASQTIGTYLMPGLIGLFRQKYPH 124
Query: 122 VKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSD--KLISI-PCYQWEYVIIVPLDHPL 178
+ + L + ++I + D+A++ + P++ L+SI P + E +IVP DHP
Sbjct: 125 ICVQLQVHSTRRIAWSVAKGHIDVAVIGGAI-PTELIPLLSIQPFAEDELTLIVPPDHPF 183
Query: 179 LLLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLET-INSDIIKTYVEL 236
L+ I +++ Y L F + LDR +++K+ I+ + I+++ +K +EL
Sbjct: 184 ARLSKIQKEDL-------YRLRF---VSLDRHSTIRKVIDQILHQNGIDTNRLKMEMEL 232
>sp|P52595|CBBR_RHORU HTH-type transcriptional regulator CbbR OS=Rhodospirillum rubrum
GN=cbbR PE=4 SV=1
Length = 298
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSI 70
+AV ++ + + AA+ L +QP VS I ++E + +F + G R+ LT+ G +L +
Sbjct: 16 DAVARHLSFSNAARELGLTQPAVSLQIKQIEALAGLPLFEQMG-RVLLLTQAGTILLGHV 74
Query: 71 EIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN 130
I+ + K G L I T A+Y P+++ FT +P V+L L N
Sbjct: 75 RTILAAVTDADKAMDALKGKRAGALRIGVVST-AKYFAPRLLSVFTAGYPGVELGLTVAN 133
Query: 131 PKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISLKEIS 190
+QI MI+ + D+ I+ P++ + V++ DH L+ ++ ++S
Sbjct: 134 REQILGMIQENALDLFIMGR--PPTEPAVRAELAPNPMVMVAASDH--LVRRKLTFHDLS 189
Query: 191 NYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGIGIIASIAFDS 250
+ + RI +++ + + P+ ++E +++ IK V MGI ++
Sbjct: 190 GETFLMREPGSGTRILMEKLMTDHGVLPHRMIEMSSNETIKQAVMAGMGISLL------- 242
Query: 251 NRDKNLRSISASHLF-----GTTISR---VIIKQGTYLRSYVYSFIKLL 291
+R+ +S L G I R V+I++G +L + + L
Sbjct: 243 SRNTMSLELSVGRLVILDVEGLPIQRDWYVVIREGKHLAPVAEAMVAFL 291
>sp|P77744|ABGR_ECOLI HTH-type transcriptional regulator AbgR OS=Escherichia coli (strain
K12) GN=abgR PE=4 SV=1
Length = 302
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 7/232 (3%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
+ +HQ R E RQ ++ A++ L SQP +SK+I ELEE L+ +F R K + LT
Sbjct: 5 VKIHQIRAFVEVARQG-SIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVT-LT 62
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
G++ + +I++E+ ++ ++ G + I + +R +P +I F Q P
Sbjct: 63 DAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQHP 122
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIP-CYQWEYVIIVPLDHPLL 179
+VK+ +++G + +R + D I T P D + + ++ I HP
Sbjct: 123 QVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFTFEKLLEKQFAIFCRPGHP-- 180
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPY--IVLETINSDI 229
+ + S+K++ +Y S +L Q TP +V ET ++ I
Sbjct: 181 AIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACI 232
>sp|P49518|RBCR_ODOSI Probable RuBisCO transcriptional regulator OS=Odontella sinensis
GN=rbcR PE=3 SV=1
Length = 309
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 132/278 (47%), Gaps = 11/278 (3%)
Query: 3 LHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKP 62
L Q R ++ A+ + T AA+ L+ SQP +SK I LE L+I + R I LT+
Sbjct: 7 LQQLRILK-AIATEKSFTRAAEVLFVSQPSLSKQIKTLESRLNISLLNRENN-IVSLTQA 64
Query: 63 GQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKV 122
G+ L E I+ E ++ + D GNL + + T Y +P+++ F P++
Sbjct: 65 GKLFLEYSERILALCEESCRVLNDLKTGDRGNLIVGASQTIGTYLMPRVLALFAQNHPQI 124
Query: 123 KLSLLQGNPKQITEMIRNDQADIAIV-TEILSPSDKLISIPCY-QWEYVIIVPLDHPLLL 180
+ + + ++I + + DIA+V I +K + + + E ++I+P HP L
Sbjct: 125 NIEVHVDSTRKIAKRVLEGDIDIAVVGGNIPEEIEKNLKVEDFVNDELILIIPKSHPFAL 184
Query: 181 LNSISLKEISNYPL--ITYDLSFSGRIKLDR---EFSLQKLTPYIVLETINSDIIKTYVE 235
+ + Y L IT + + + R +D + + + I+++ + + IKT V
Sbjct: 185 KKKKKINKDDLYHLNFITLNSNSTIRKLIDNILIQIAFEPKQFNIIMQLNSIEAIKTAVS 244
Query: 236 LRMGIGIIASIAFDSNRDKNLRSISASHLFGTTISRVI 273
L +G ++S A + ++ L++I + I+R++
Sbjct: 245 LGLGAAFVSSSAIE--KEIELKTIEIVTIEDIKITRIL 280
>sp|O34701|YOAU_BACSU Uncharacterized HTH-type transcriptional regulator YoaU OS=Bacillus
subtilis (strain 168) GN=yoaU PE=4 SV=1
Length = 290
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 22/258 (8%)
Query: 1 MNLHQFR-FVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGL 59
MN++ FV+ V + N+TEAAK L+ SQP VSKAI LE L + + IR L
Sbjct: 3 MNMNHLHIFVK--VGEKLNITEAAKELFISQPAVSKAIKNLESSLQLKLLIRDKHHGLML 60
Query: 60 TKPGQAILRSIEIIMQEIEGLK----KIGKEFSAYDTGNLTIATTHTQARYALPKIIKEF 115
T G+ IL ++ ++++G++ ++ + G + I + + +P+ I F
Sbjct: 61 TDIGKEIL----LLARQMKGIESKIYQVANRENKLLNGKVKIGSFPAVSTNIMPQAIAAF 116
Query: 116 TIQFPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLD 175
+P +++ L++G QI + + DI I P + + C + +I P
Sbjct: 117 RSNYPLIRIELIEGTSDQIKGWVEDRTVDIGIAASPFEPFEN--QLLCNDYMVAVIPPQR 174
Query: 176 HPLLLLNSISLKEISNYPLITYDLSFS---GRIKLDREFSLQKLTPYIVLETINSDIIKT 232
L L + L+ + DL F I + FS + L N++ +
Sbjct: 175 DELKLEKHVDLETYQD------DLIFCKGGHEIAMSNAFSQYNIELKENLTVQNAETLIN 228
Query: 233 YVELRMGIGIIASIAFDS 250
V+ +GIGII++ S
Sbjct: 229 MVKNNLGIGIISNFTLSS 246
>sp|P52696|YBHD_ECOLI Uncharacterized HTH-type transcriptional regulator YbhD
OS=Escherichia coli (strain K12) GN=ybhD PE=4 SV=3
Length = 317
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 121/244 (49%), Gaps = 10/244 (4%)
Query: 8 FVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAIL 67
FV A +FN AAK L +QP +++ I ++EE+L + +F R +++ LTK G+ +L
Sbjct: 11 FVILAESSSFN--NAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVT-LTKAGKRLL 67
Query: 68 -RSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSL 126
+ E+I + E L I ++ +AY G +T+A T Y LP I +F +P +K+ +
Sbjct: 68 PEARELIKKFDETLFNI-RDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRI 126
Query: 127 LQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSISL 186
L+ E + +++D I ++ S + P +V+ DHPL +
Sbjct: 127 LEQGTNNCMESVLCNESDFGINMNNVTNSS-IDFTPLVNEPFVLACRRDHPLAKKQLVEW 185
Query: 187 KEISNYPLITYDLSFSGRIKLDREFSLQ--KLTPYIVLETINSDIIKTYVELRMGIGIIA 244
+E+ Y +I S R+ ++++ + + KL + + +++ + VE +GI +
Sbjct: 186 QELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSL--GLVEAGLGISALP 243
Query: 245 SIAF 248
+A
Sbjct: 244 GLAM 247
>sp|O78432|RBCR_GUITH Probable RuBisCO transcriptional regulator OS=Guillardia theta
GN=rbcR PE=3 SV=1
Length = 310
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 7/248 (2%)
Query: 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61
L Q R ++ A+ + +AA++LY SQP VS I LE++L+I IF R ++ T+
Sbjct: 7 TLDQLRILK-AIASEGSFKKAAESLYISQPAVSLQIQNLEKQLNIPIFDRANRKAV-FTE 64
Query: 62 PGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPK 121
G +LR ++ + + ++ G L I + T Y +P++I F ++P+
Sbjct: 65 EGDTLLRYGNRVLSLCDETCRAIEDLKTLQGGTLIIGASQTTGTYLMPRLIGLFRHKYPQ 124
Query: 122 VKLSLLQGNPKQITEMIRNDQADIAIVTEILSPS--DKLISIPCYQWEYVIIVPLDHPLL 179
+ + L + +++ + N Q ++A+V + KL P E +I+P HP
Sbjct: 125 IAVQLQVHSTRRVAWSVANGQVNLAVVGGKVPDELRSKLQITPYVDDELALILPKLHPFS 184
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLD---REFSLQKLTPYIVLETINSDIIKTYVEL 236
L I +++ IT D + R +D E + I +E + + IK V+
Sbjct: 185 KLEVIQKEDLYRLRFITLDKQSTIRRVIDTVLNEHGIDSARFKIEMELNSVEAIKNAVQS 244
Query: 237 RMGIGIIA 244
+G ++
Sbjct: 245 GLGAAFVS 252
>sp|P94501|GLTR_BACSU HTH-type transcriptional regulator GltR OS=Bacillus subtilis
(strain 168) GN=gltR PE=1 SV=3
Length = 296
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 135/289 (46%), Gaps = 9/289 (3%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
MN+ + R+ ++++AA L +Q V+ I +LE +L +F RH + I LT
Sbjct: 1 MNIQLLQVFLTTAREG-SISKAALTLNYAQSNVTNKIQQLENDLQTKLFYRHSRGIT-LT 58
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFP 120
PGQ ++ E I+ IE + E SA +G L I + T A LP+++ + +P
Sbjct: 59 PPGQILVSYSEKILHTIEEARAAMGESSA-PSGPLRIGSMETTAAVWLPQLLAHYNNLYP 117
Query: 121 KVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLL 180
V L+L+ G +Q + + + + + A ++ + D L+ E V++ HP++
Sbjct: 118 NVDLNLVTGPTEQQIQAVLHYELNGAFISGPIEHPD-LVQEKVLDEEMVLVTSASHPVI- 175
Query: 181 LNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMGI 240
S++++ ++ + S R KL+ + L P ++E + I V +GI
Sbjct: 176 ---SSIQDVQTQTMLVFRKGCSYRAKLNHILQEEGLLPIKLMEFGILEAIIGCVSAGLGI 232
Query: 241 GIIA-SIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFI 288
++ SI ++ +RS + S + + I ++ T + + +F+
Sbjct: 233 SLLPRSIIASHEKEGRIRSHTISDKYSFVSTMFIRRKDTLITPALSAFL 281
>sp|P94403|BSDA_BACSU HTH-type transcriptional regulator BsdA OS=Bacillus subtilis
(strain 168) GN=bsdA PE=4 SV=1
Length = 290
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 136/301 (45%), Gaps = 21/301 (6%)
Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLT 60
M++ Q R+ + Q +T AAK L+ +QP +S+ + +LE+EL + +F R+ K+ LT
Sbjct: 1 MDIRQLRYFI-TIAQEQKITSAAKKLHMAQPPLSRQLKQLEDELGVVLFDRNKKKQMTLT 59
Query: 61 KPGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKI--IKEFTIQ 118
G L+ + I+ E +E G L + +T A L K+ IKE +
Sbjct: 60 YEGAVFLKRAKEILHRFEDAVIEVQELKEEVAGTLAVGSTIYCAALMLEKVTQIKE---R 116
Query: 119 FPKVKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSD-----KLISIPCYQWEYVIIVP 173
+P + ++ + P + E++ + Q D A+ T ++ SD +L IPC V+++
Sbjct: 117 YPHLTFNIWENEPATLLELLESRQIDAAVTTTLIK-SDTVQFKQLDDIPC-----VLVLS 170
Query: 174 LDHPLLLLNSISLKEISNYPLITYDLSFSGRIKLDR---EFSLQKLTPYIVLETINSDII 230
+ ++I + +I ++PLI +G+ ++ EF L P IV E +S +
Sbjct: 171 DEAGYPCGDTIKMVDIPSFPLILLR-PVNGKGVYNQVMNEFHRLNLEPRIVCECHDSATL 229
Query: 231 KTYVELRMGIGIIASIAFDSNRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIKL 290
+ V G I+ + ++ ++ + V+ + +YL F+ L
Sbjct: 230 LSLVSSGFGASILPVTMIPVHMRNHVHTVHIENNPFIMTPAVMWRTDSYLPKPAQQFLDL 289
Query: 291 L 291
Sbjct: 290 F 290
>sp|Q06610|RBCR_THIFE RuBisCO operon transcriptional regulator OS=Thiobacillus
ferrooxidans GN=rbcR PE=4 SV=1
Length = 309
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 116/246 (47%), Gaps = 8/246 (3%)
Query: 2 NLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTK 61
LHQ + + AV ++ + AA+ L+ + P +S + +L E + +F + GK+I LT
Sbjct: 7 TLHQLK-IFAAVARHMSFARAAEELHLTPPALSIQVRQLAEAVGQPLFDQIGKKIY-LTA 64
Query: 62 PGQAILRSIEIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPK 121
G+A+ + I+ +E + + G+L +AT T +Y +P+++ F + P
Sbjct: 65 AGEALTSACHDILDRLEYFTQEIAALQGLEKGSLKVATLST-TKYFIPRMLGGFCTEHPG 123
Query: 122 VKLSLLQGNPKQITEMIRNDQADIAIVTEILSPSDKL--ISIPCYQWEYVIIVPLDHPLL 179
V L GN + + E + +Q D+ I+ + P + + ++ V++ LDHPL
Sbjct: 124 VATVLFIGNREVLLERLARNQDDLYILGQ---PPEHMNVVAEAFADNPLVVVARLDHPLT 180
Query: 180 LLNSISLKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVELRMG 239
I + + P I + R+ ++ F + +E +++ +K V +G
Sbjct: 181 QEKDIEPSRLRDVPFILREPGSGTRLAAEKFFEQHGVILKTRMEFGSNEAVKQSVAGGLG 240
Query: 240 IGIIAS 245
I ++++
Sbjct: 241 ITVLSA 246
>sp|Q04778|ALSR_BACSU HTH-type transcriptional regulator AlsR OS=Bacillus subtilis
(strain 168) GN=alsR PE=4 SV=1
Length = 302
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 12/242 (4%)
Query: 12 AVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSIE 71
AV + + +AA+ L +QP +S+ I +LEEE+ + + R KR LT G+ L
Sbjct: 11 AVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKR-TKRFVELTAAGEIFLNHCR 69
Query: 72 IIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGNP 131
+ + +I ++ + + + G L I + LP I++E+ +FP VK+ L + +
Sbjct: 70 MALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSVKIELREISS 129
Query: 132 KQITEMIRNDQADIAIVTEILSPS----DKLISIPCYQWEYVIIVPLDHPLLLLNSISLK 187
+ E + DI I+ L + + S PC V+ +P HPL SI+++
Sbjct: 130 SRQQEELLKGNIDIGILHPPLQHTALHIETAQSSPC-----VLALPKQHPLTSKESITIE 184
Query: 188 EISNYPLITYDLSFSGRIKLDR-EFSLQK-LTPYIVLETINSDIIKTYVELRMGIGIIAS 245
++ + P+IT + +D +F Q P IV E ++ V +G+ + S
Sbjct: 185 DLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGMTFVPS 244
Query: 246 IA 247
A
Sbjct: 245 SA 246
>sp|A0R8S0|CZCR_BACAH HTH-type transcriptional regulator CzcR OS=Bacillus thuringiensis
(strain Al Hakam) GN=czcR PE=4 SV=1
Length = 298
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 41/294 (13%)
Query: 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSI 70
++V +++ AAK L Q V+ I +LE EL +F RH KR LT G+ +L +
Sbjct: 20 QSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRH-KRGMTLTAEGRKMLVYV 78
Query: 71 EIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN 130
I+Q+++ LK++ + S +G L I T T + LP I+ + +P V LSL G
Sbjct: 79 HKILQDVDELKQVFLD-SETPSGILKIGTVETVS--TLPTILSSYYKSYPNVDLSLQAGL 135
Query: 131 PKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSIS----- 185
+++ + + Q D A ++ P+ HPL+ +S
Sbjct: 136 TEELIREVLDHQLDGAFISG----------------------PIKHPLIEQYDVSTEKLM 173
Query: 186 ---------LKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236
++E + PL+ ++ R KL+R + L P ++E + I V L
Sbjct: 174 LVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVAL 233
Query: 237 RMGIGIIASIAFDS-NRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIK 289
+GI ++ A ++ + + +G+ + I ++ +Y+ + + SF+K
Sbjct: 234 GLGITLVPQSAVHHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLK 287
>sp|Q63H01|CZCR_BACCZ HTH-type transcriptional regulator CzcR OS=Bacillus cereus (strain
ZK / E33L) GN=czcR PE=4 SV=1
Length = 288
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 41/294 (13%)
Query: 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSI 70
++V +++ AAK L Q V+ I +LE EL +F RH KR LT G+ +L +
Sbjct: 10 QSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRH-KRGMTLTAEGRKMLVYV 68
Query: 71 EIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN 130
I+Q+++ LK++ + S +G L I T T + LP I+ + +P V LSL G
Sbjct: 69 NKILQDVDELKQVFLD-SETPSGILKIGTVETVS--TLPTILSSYYKSYPNVDLSLQAGL 125
Query: 131 PKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSIS----- 185
+++ + + Q D A ++ P+ HPL+ +S
Sbjct: 126 TEELIREVLDHQLDGAFISG----------------------PIKHPLIEQYDVSTEKLM 163
Query: 186 ---------LKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236
++E + PL+ ++ R KL+R + L P ++E + I V L
Sbjct: 164 LVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVAL 223
Query: 237 RMGIGIIASIAFDS-NRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIK 289
+GI ++ A ++ + + +G+ + I ++ +Y+ + + SF+K
Sbjct: 224 GLGITLVPQSAVHHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLK 277
>sp|Q73EY2|CZCR_BACC1 HTH-type transcriptional regulator CzcR OS=Bacillus cereus (strain
ATCC 10987) GN=czcR PE=4 SV=1
Length = 288
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 41/294 (13%)
Query: 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSI 70
++V +++ AAK L Q V+ I +LE EL +F RH KR LT G+ +L +
Sbjct: 10 QSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRH-KRGMTLTAEGRKMLVYV 68
Query: 71 EIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN 130
I+Q+++ LK++ + S +G L I T T + LP I+ + +P V LSL G
Sbjct: 69 NKILQDVDELKQVFLD-SETPSGILKIGTVETVS--TLPTILSSYYKSYPNVDLSLQAGL 125
Query: 131 PKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSIS----- 185
+++ + + Q D A ++ P+ HPL+ +S
Sbjct: 126 TEELIREVLDHQLDGAFISG----------------------PIKHPLIEQYDVSTEKLM 163
Query: 186 ---------LKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236
++E + PL+ ++ R KL+R + L P ++E + I V L
Sbjct: 164 LVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVAL 223
Query: 237 RMGIGIIASIAFDS-NRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIK 289
+GI ++ A ++ + + +G+ + I ++ +Y+ + + SF+K
Sbjct: 224 GLGITLVPQSAVHHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLK 277
>sp|Q6HPH4|CZCR_BACHK HTH-type transcriptional regulator CzcR OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=czcR PE=4 SV=1
Length = 288
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 41/294 (13%)
Query: 11 EAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELSIDIFIRHGKRIRGLTKPGQAILRSI 70
++V +++ AAK L Q V+ I +LE EL +F RH KR LT G+ +L +
Sbjct: 10 QSVADQGSVSSAAKELNYVQSNVTTRIKQLENELKTPLFYRH-KRGMTLTAEGRKMLVYV 68
Query: 71 EIIMQEIEGLKKIGKEFSAYDTGNLTIATTHTQARYALPKIIKEFTIQFPKVKLSLLQGN 130
I+Q+++ LK++ + S +G L I T T + LP I+ + +P V LSL G
Sbjct: 69 NKILQDVDELKQVFLD-SETPSGILKIGTVETVS--TLPTILSSYYKSYPNVDLSLQAGL 125
Query: 131 PKQITEMIRNDQADIAIVTEILSPSDKLISIPCYQWEYVIIVPLDHPLLLLNSIS----- 185
+++ + + Q D A ++ P+ HPL+ +S
Sbjct: 126 TEELIREVLDHQLDGAFISG----------------------PIKHPLIEQYDVSTEKLM 163
Query: 186 ---------LKEISNYPLITYDLSFSGRIKLDREFSLQKLTPYIVLETINSDIIKTYVEL 236
++E + PL+ ++ R KL+R + L P ++E + I V L
Sbjct: 164 LVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVAL 223
Query: 237 RMGIGIIASIAFDS-NRDKNLRSISASHLFGTTISRVIIKQGTYLRSYVYSFIK 289
+GI ++ A ++ + + +G+ + I ++ +Y+ + + SF+K
Sbjct: 224 GLGITLVPQSAVHHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLK 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,948,291
Number of Sequences: 539616
Number of extensions: 4022020
Number of successful extensions: 11852
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 11507
Number of HSP's gapped (non-prelim): 404
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)